LOCUS       DABQVC010000001        37981 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.001,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000001 DABQVC010000000
VERSION     DABQVC010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 37981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37981
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.001"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..538)
                     /locus_tag="IBJ56_000001"
     CDS             complement(<1..538)
                     /locus_tag="IBJ56_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase-like domain-containing protein"
                     /protein_id="HAM3416290.1"
                     /translation="MSGGAKKNLFNIAIVLAISIGFIIWQFQGVDISTFFASMLKVNP
                     WWLSAAFAAMFIYWFLEAVVLQTASKPANKDQRFFSSFRITMIGQFFNTITPMATGGQ
                     PAQLVMLTKQGMDAGRGSSVLLVKFIIYQAMVVLNFLVILIFGIHYLMTGVTQLKFLV
                     LLGFGVHVIVIAALILVGR"
     gene            complement(545..1570)
                     /locus_tag="IBJ56_000002"
     CDS             complement(545..1570)
                     /locus_tag="IBJ56_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAM3416291.1"
                     /translation="MIKLTMLSSAEKVKGQGVASAYRELVNLLEERYKNEIDMKINSF
                     EKSDITHYHTVDFRFFLSTFFKKKRGVRVGYVHFLPETMEGSLKLPWIARVVFYKYLI
                     GFYKRMDEIVVVNPSFIPKLTAYNIPAEKIHYIPNFVSKKSFFPISKGEKELARAKYE
                     IPADKFTVIGIGQVQHRKGVLDFIEVAKQLPDVQFVWAGGFSFGKITSGYEELKKIYD
                     NPPSNVKFIGIVDRSEMNSCINMADVFFMPSYNELFPMAILEAMSCDVPILLRNLDLY
                     EEILDGYYVKEVDNPGFIRDIERLENDTNYYNEMLQASKRGAAYYSEDRLAEIWLDFY
                     QGLLTKE"
     gene            complement(1563..2846)
                     /locus_tag="IBJ56_000003"
     CDS             complement(1563..2846)
                     /locus_tag="IBJ56_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAM3416292.1"
                     /translation="MNIGIFTDTYSPQISGVATSIMIMENELRKQGHTVYIFTTTDPN
                     ADRESEEGRVFRLPSIPFVFFPERRVAIAGMNKFIKLVGRLDLDIIHTHTEFSLGLLG
                     KRIAKKYHIPSIHTYHTMYVDYLHYIAKGKILTPSMVGKMTKSFCDSYDAIITPTAKV
                     RHHLEEQGIHKLMYTVPTGTDISSFAPVEKQRILNLKKLLGIGENDPVILSLGRIAHE
                     KNIDAIINAMPEVLQTKTTAKLVIVGDGPVRKDLEKLVEEKQLADHVIFTGAVDWENI
                     SLYYQLGDLFVSASTTETQGLTYAEAMAASLPVVAKRDESIEGFLSDRETAFLFNEDD
                     ELASLLINILSDKNTATLVATNGRVKVESISADQFGINIESTYNEVREIYRVKRQNGT
                     IKVKPTLIKSKIASQVFSLSSSTHVQRKERSSRRD"
     gene            complement(3167..4021)
                     /gene="fba"
                     /locus_tag="IBJ56_000004"
     CDS             complement(3167..4021)
                     /gene="fba"
                     /locus_tag="IBJ56_000004"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-1,6-bisphosphate aldolase"
                     /protein_id="HAM3416293.1"
                     /translation="MPIVNMTDMLKKALAGKYAVGQFNINNLEWTQAILKAAEAEKAP
                     VILGVSEGAAKYMGGFKTVVKMTEGLVEDLKITVPVAIHLDHGSSFDSCKAAIDAGFS
                     SVMIDGSHHPIDENIAMTKQVVDYAHAKGVSVEAEIGTVGGDEDGVTGGINYADPQEC
                     LRVVKEANIDALAAALGSVHGPYHGEPVLGFDEMKEISELTGAPLVLHGGSGIPEHQI
                     KKAIELGHSKINVNTECQIVWTAAVREKLATDDKVYDPRKVIGPGVDAIIKTVTEKIQ
                     EFGSNGKA"
     gene            complement(4189..5109)
                     /locus_tag="IBJ56_000005"
     CDS             complement(4189..5109)
                     /locus_tag="IBJ56_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HAM3416294.1"
                     /translation="MQKKAMIIYNPAAGKNKFRKLLPDAEKILTEADFEVTLVPSTPA
                     PKSTTFIAKQAAEAGFDVVIAAGGDGTVNEVVNGLMQVDTPPKLGVLPVGTTNDYARA
                     LNFAKNPLEALRIIAKQETIRVDIGKANETEFFINNAAGGKITEITYAVKESMKSKWG
                     RLAYLFSGLTVLPKLSPVYVEIAYNDKIFKGEILLFFVNKSNSVGGMETLCPPAELNS
                     GMFELLILKKVSPKTLFQLFASIKKGTHLSSPHVIHARTNKVTINSEADLNVSYDGVY
                     GGKAPYTLEVIPEALEVFADTNRISSRLRG"
     gene            5426..7738
                     /locus_tag="IBJ56_000006"
     CDS             5426..7738
                     /locus_tag="IBJ56_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3416295.1"
                     /translation="MKKLVKSAVVFASLVFIGTSATMITEKASAASIDPVQKADGQAT
                     YIPKGVRDGTATEEHDGFEDGTNSVLQQVPLLRATTGYPDVNAYIKSNKFSTAKIEKQ
                     LKSQFPKFNYRNGYGKPEGIVIHETANNSSTITGEINYMSTNYNNAFVHAFVDKSRII
                     QIHPTENGVWGAGQYANARFIQVELVRSKTFDEFARSINNYAYYAAYLLDQYNLPVDS
                     AHSDGKGTVWSHDAVTRYLGGTTHTDPVSYFNQWGYNFNSFVTLINEKYKAIQASKVT
                     YDKIEYDKGVTAYARVKTAPGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTPI
                     TTWYQFSIDGKVIGWVDTRALDTFYKQSMEQPANLTRYVASNKTGEAYYKVPVVDADV
                     KWGTLAAYKDQKLTVDKQATVEGQLWYRVRTSTTFIGWTKASNLTATSPFDKIEYDKG
                     VTAYARVKTAPGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTVITTWYQFSID
                     GKVIGWVDTRALDTFYKQSMEKDTNLTRYVIANKVNEAYYKVPVVDADVRWGTLAAYK
                     DQKLTVDKQATVEGQLWYRVRTSTTFIGWTKASNLTTTTPYDKIEYDKGATAYARVKT
                     APGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTVITTWYQFSIDGKVIGWVDT
                     RALDTFYKQSMEKDTNLTRYVIANKVNEAYYKVPVVDADVRWGTLAAYKGQKLTVDKQ
                     ATVEGQLWYRIRTSSTFIGWTKASNLSATK"
     gene            complement(7791..9389)
                     /locus_tag="IBJ56_000007"
     CDS             complement(7791..9389)
                     /locus_tag="IBJ56_000007"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HAM3416296.1"
                     /translation="MTKYIFVTGGVVSSIGKGITAASLGRLLKNRGLSVTIQKFDPYI
                     NVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKVYSEVIKKE
                     RRGDYLGGTVQVIPHITNELKDRVFRAARMTNSDIIITEIGGTVGDIESLPFLEAIRQ
                     IKSDVGAENVLYIHTTLIPYIKAAGEMKTKPTQHSVKELRSLGIQPNIIVVRTEQPVS
                     QEMKDKIALFCDIKASEVIESRDEETLYNVPLSLQKQKMDDIVLEHLQLEAPQAEMTD
                     WKNLVHRVKNLSKKVRIGLVGKYVSLQDAYLSVAEALRHAGYDHDAEIEIDWIDSEKV
                     TKENVAEIMKDVDGILVPGGFGDRAIEGKIAAIEYARVNKVPYFGICLGMQLATVEFA
                     RNVLGLEGAHSAEIEPETKHNIIDLLPEQKNIENMGGTLRLGLYPARIKQGTKAEAAY
                     GTTLVEERHRHRYEFNNEYREQMEEAGMIVSATSPDGRLVEVVELADHPWFVACQYHP
                     EFISRPNRPQSLFKDFVGAALNNK"
     gene            complement(9754..10290)
                     /locus_tag="IBJ56_000008"
     CDS             complement(9754..10290)
                     /locus_tag="IBJ56_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HAM3416297.1"
                     /translation="MDLKNLTQEERSELSLIDVAHFILEQRKETILFPELVKEIQAFL
                     GLKDAEIRERLVQFYTDMNIDGNFISLGNNTWGLRAWYPMDAIDEEVQTQTTPKKKRK
                     SDDDDDEDEEILDDDVDYDDEEIVEELGEEEISLADVLLDEDEDDDDHLPDGIEGDLA
                     TVEDDYTDGDYTEDPEDK"
     gene            complement(10656..12326)
                     /locus_tag="IBJ56_000009"
     CDS             complement(10656..12326)
                     /locus_tag="IBJ56_000009"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HAM3416298.1"
                     /translation="MNVMQENQIKLIEHIKQAVVQAVGLEEAEVPEILLEVPKDKKHG
                     DYSTNIAMQLARVAKKAPRQIAESIVPELKKDNKLIKEVEIAGPGFINFYLDNAYLTD
                     LVPVILTEDKKYGESDFGKGEKFQIEFVSANPTGDLHLGHARGAAIGDSLANIMKMAG
                     FDVSREYYINDAGNQINNLVLSAEARYFEALGLDSEFPEDGYRGADIISLGKDLAAKY
                     GDKYVHTSEEERRSVFRVDALAFETGKLRADLEEFRVSFDEWFSETSLYEENKVLPAL
                     ERLRENGYIYEQDGATWLRTTDFEDDKDRVLIKSDGSYTYFLPDIAYHLNKLERGFDV
                     LIDIWGADHHGYIPRMRAAIEALGYSPNQLEVEIIQLVHLFEDGVQVKMSKRTGKSVT
                     MRDLIEEVGLDATRYFFAMRSSDTHMNFDMSLAKSTSNDNPVYYVQYAHARISSILRS
                     GKEQGLEVTKDADMSLLQTEAEYDLLKVLGEFADVVAEAATKRAPHRIVRYLNDLASS
                     FHRFYNSNKVLDMDNLEVTKARLALIKTAQITLRNGLTLLGVSAPEKM"
     gene            complement(12323..12772)
                     /locus_tag="IBJ56_000010"
     CDS             complement(12323..12772)
                     /locus_tag="IBJ56_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 domain-containing protein"
                     /protein_id="HAM3416299.1"
                     /translation="MTANQMERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRY
                     LHYEEKQLAGTIRTVLKIADNELLLMRSGAVNMRMHFFRDNRRSTASVDSGAGKLQLE
                     SELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE"
     gene            complement(12850..13503)
                     /locus_tag="IBJ56_000011"
     CDS             complement(12850..13503)
                     /locus_tag="IBJ56_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HAM3416300.1"
                     /translation="MPSFLAYPLEMIPYVLVTLLIAFTIHEWAHALVALAFGDDTAKN
                     EGRLSLNPVVHIDLFGLLMILIAGFGWAKPTPVNRFKLKKRRLGSILVSLAGPVSNLL
                     LAMVGVGLYALFLNYSFFTYGSVAETFLMIFVQLNLVLFVFNLIPLPPLDGYQILVEF
                     LPMSTRSKLEPLERYAMLIFLVVALTPISEFTIQPIFNTVIPFVLNVILTIFGLTSF"
     gene            13538..13762
                     /locus_tag="IBJ56_000012"
     CDS             13538..13762
                     /locus_tag="IBJ56_000012"
                     /EC_number="5.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HAM3416301.1"
                     /translation="MCYNEKNVDRGEKMPFVTIQFLEGRTDDQKKALVSEVTEVVAKN
                     LKAPKENIHVILEEMKKTDYGVGGVRKSDI"
     gene            complement(13797..15119)
                     /locus_tag="IBJ56_000013"
     CDS             complement(13797..15119)
                     /locus_tag="IBJ56_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HAM3416302.1"
                     /translation="MSYLTEKLREEKVFKDPVHGYVHVSDKIIWDLIATKEFQRLRRI
                     HQLGTTSLTFHGAEHSRFNHSLGVYEIVRQIIDVTFANEPQLDPEERMVALCAALLHD
                     LGHGPFSHAFEKVFGTDHESYTQEIIIGDTEVNKILMRAGEEFPLKVAAIIKKNYPNQ
                     TLVKLISSQIDADRMDYLLRDAYYTGVSYGKFDLERILRVLRPSPDGNGVIVKYSGMH
                     AVEDYIMSRYQMYQQVYFHPVSRSGEVLLWKILERAKKLYCAGYEFQATPIQVLPFFL
                     NEVSLKDYIVLDDIVLMYYFSIWQEEEDPILSDLCSRFLNRRLLRYINYDPKEDAELY
                     AELKGLLEKADIDPSYYLVIDSSSDLPYDYYLPGVGSGKDPIKLLMGNGELRELSTES
                     PVVEAIGRERRTDIKLYYPLDFIESGHVEEAITERMIALIHAHSLKEK"
     gene            complement(15134..15970)
                     /locus_tag="IBJ56_000014"
     CDS             complement(15134..15970)
                     /locus_tag="IBJ56_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl-[GcvH]:protein N-lipoyltransferase"
                     /protein_id="HAM3416303.1"
                     /translation="MNIEDTLLKQDVWRFIDNTTINPAFDAIQSFATDDTLCRSVGAR
                     MAPSTVRGWVHEKTVSLGIQDSKLPDIDKGIAFLQEQGYRVVVRNSGGLAVVLDSGVL
                     NLSMVLPDAERGIAIERGYETMFTLIKDMFVDCNEVIEAKEIEDSYCPGSYDLSIQGK
                     KFAGISQRRMAKGVAVQIYLAIDGDQTTRSELIRDFYTISGKAKQTKYTFPDVNPNVM
                     GSLSDLMKNDISLNGTLVRLFNSLRHYAGELVSGTLTSEELDLFPAYYERLIARNDKV
                     LT"
     gene            complement(16288..16488)
                     /locus_tag="IBJ56_000015"
     CDS             complement(16288..16488)
                     /locus_tag="IBJ56_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416304.1"
                     /translation="MNSFWKIFFTVILGFIALNIVLDIVGITLHFLFPVLILGGIGYL
                     LYRMWGNSPKRSSRDNEDRYNW"
     gene            complement(16511..16834)
                     /locus_tag="IBJ56_000016"
     CDS             complement(16511..16834)
                     /locus_tag="IBJ56_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HAM3416305.1"
                     /translation="MKKGLFGLLAAIFVLTMVVIEFSAPIGSAANTYYVTIKNDGKEV
                     TKSKFKGYSFRESCLDNQGNSHKVNFMSTTQLKKNKQYKIVVQDNELLVQAKEINSVP
                     LASSK"
     gene            complement(16988..18649)
                     /locus_tag="IBJ56_000017"
     CDS             complement(16988..18649)
                     /locus_tag="IBJ56_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3416306.1"
                     /translation="MHKTARKMVVALSLLCLLALTACQSGNKGENEKVTSDKKSKVVN
                     IMETSGIPNASPTLADNSVSFRVINQIFEGLYRLDKNGKPALALAASEPEEKDGGKTL
                     IFKIREDANWSNGDPVTAHDFEYAWKKVVDPKTAAAYGPQMEEIVKNATQILKGEMSP
                     DELGIKALDDKTLQIELENPVPIFKELLTTGTFFPQNQAFVEKQGDRYGTKSDTLISN
                     GPYKLENWNGTNMTWDYVKNPTYWDKKNVPTKKIHVTVVKDTNAALNLYNTNKLDRVE
                     LDGEFVKQYKDDKNFHKEATGRSVYMKMNQGKDGVKTDLANLNLRRGLAMAIDKTGMV
                     NTLLANGSKALNGDVPGDIMFDPETKEDFRKQNGDLLKFDQQEATNAWKQGLKEIGKT
                     ELTLTLTSGDTSLQRKQTEFIQNQLEENLPGLTIKLKNVTNQASFQADVTQDFELLLG
                     GWGGDYQDPLTYLNLFLTNSPGNHTGFSDAKYDELVLGAKGKLSADPEKRWQALLEAE
                     QILLKDNAVLIPLYQGGRAYLQKSNLKNYTTYPIGSENYKWIEKN"
     gene            complement(18784..19398)
                     /locus_tag="IBJ56_000018"
     CDS             complement(18784..19398)
                     /locus_tag="IBJ56_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdpI family protein"
                     /protein_id="HAM3416307.1"
                     /translation="MRKVGIFPSMIILFTVGISAVLYPLLPSEVAVHFGTDFSPDMFM
                     QKWLGLILIPFLMIMFTGTEYYGKEKVNQESLLEFEYCFRLLLVLLTIIQMSIIVYAL
                     GYDIPTGRFSLVTAGAFMFVVAAYIQYSKKLFKFLTMIGFKKIDAWSRNLLRKITTVT
                     LNIAGTICFILALFMRNDPSYLMLAMLMTMCVIVVGSGVYLNKK"
     gene            complement(19422..20054)
                     /locus_tag="IBJ56_000019"
     CDS             complement(19422..20054)
                     /locus_tag="IBJ56_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HAM3416308.1"
                     /translation="MKIAAFDIDAQKGFTPLCPDELPVSGGDKIVPELNFMASLASLR
                     IGSKDAHPQNAVWVVDSKDEMLAELEYPNADRTWVRHCEPGTKGFELLDGLPVVTDYD
                     YFIWKGMEPDIHPYGACYHDIVEQLSTGVLEYLREQKVDLVLVGGLAFDFCVKTTVIQ
                     LSRAGFSVLVYLPATRALSEQGFDETKEQLANTEKVQLIETREELVAYCQ"
     gene            complement(20055..20579)
                     /locus_tag="IBJ56_000020"
     CDS             complement(20055..20579)
                     /locus_tag="IBJ56_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HAM3416309.1"
                     /translation="MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEGDAGYEAFFD
                     NVDTVVMGRTTYQQIFSLTDTFPYSKKDVYVFSNTKAGTKDEYADFVAGTVDTWLNNI
                     DGEKIWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKGIPLFEEDREHALELEEVTRF
                     GQFAQLTYKNLEEN"
     gene            complement(20582..21580)
                     /locus_tag="IBJ56_000021"
     CDS             complement(20582..21580)
                     /locus_tag="IBJ56_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HAM3416310.1"
                     /translation="MKAVGLTRASTDFVDIEIDKPVPENHDLLVRIKAISINPVDTKQ
                     REATKLSGDEVRILGWDAVGEVVDTGSEVALFQTGQDVYFAGDVTRQGAYAEYTLIDE
                     RLVGLKPHNLNVEEAAAMPLTTITAWEALFDRLTITENDKGKSILIINGAGGVGSIAT
                     QLAAHAGLEVIATASRPETVEWTKSHGANYVINHRENIPEQLEELGFEQGVDFILCLH
                     NTSAHWDEMQEAIRPQGKICSIVELAEPVKMTLLKDKSATFSYEFMFTRSKYDTTDKI
                     RQHEILTEAAHMLDAGELTTTLNQVLSPVNAATIEEAHKIISSGKMIGKLVVKGFE"
     gene            complement(21677..21949)
                     /locus_tag="IBJ56_000022"
     CDS             complement(21677..21949)
                     /locus_tag="IBJ56_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416311.1"
                     /translation="MEEQVDLGHFLKKTFIAVVAVTLVFIGVLAMFTIIGVIIAIPLL
                     KKASKMLLSKKEASDHTHSHGGKLKIKCPACHAKMKFKDSELLDEK"
     gene            complement(21998..22909)
                     /locus_tag="IBJ56_000023"
     CDS             complement(21998..22909)
                     /locus_tag="IBJ56_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HAM3416312.1"
                     /translation="MAHNHDHAHGHNHNHAHNANKKSLFISFILIATFMVVEVIGGIM
                     TNSLALLSDAGHMLSDAVALGLSLAAFKFGEKAASSDKTYGYKRFEILAAFLNGLTLV
                     GISVFIFYEAIGRFFDPPQVIGAGMMTISVIGLLINILVAWILMKGDTSENLNMRSAF
                     LHVLGDLLGSVGAIIAALLIIFLGWNIADPIASVIVAALILVSGWRVLKDAIHILMEG
                     KPANVDTEEIKTFFQQQDGVKEVHDLHVWAITSDFNALTAHLTVCEDADRDKILADIE
                     HYLQENFSLEHSTIQLEGNHAHHHHCN"
     gene            complement(23287..24114)
                     /locus_tag="IBJ56_000024"
     CDS             complement(23287..24114)
                     /locus_tag="IBJ56_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3416313.1"
                     /translation="MANVAIDTVITDMDGTLLVKKGDQIHPLNKEVLMEWQKNGKKLF
                     LATGRLDLAILPFIHELNIKTPVISCNGGLVRDFTTGEILYKSNIELDLIHTVLETLE
                     PLDVNYHIYTTERILGPTNTGKIAFFNELNKTLPENEQVPITLTTDPFSVLREGEFPL
                     KVLVIESDLEKRAEIKAALEGLPLSVLASASNLIDIMNEGIDKAKGLTYLAENGYINL
                     DSTIAFGDNENDVGMIELAEIGVAMENGIPLALEKADKIAKHHDIGGLGLFMQEEIL"
     gene            24229..25104
                     /locus_tag="IBJ56_000025"
     CDS             24229..25104
                     /locus_tag="IBJ56_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3416314.1"
                     /translation="MKKYFITIMILLFGALFLSACQKDDEVENSSPPKVDLKNEIPII
                     LIHGSGGDTHSLDEMADHLMNEYKSSNEAMSMSINSKGKITYQGKLTKDAKRPIIKFG
                     FDQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYFAEDYSNDNAVPT
                     LRKLVAIGSPFNDLDPDDNGEDLAFNKLPSNTPQLDYFIDKETKISTDLEVLSIAGAL
                     SEDNLTDGIVPTNSSLASRLFMPNNAKVYMEDLQVGESAIHQTLHETSESIEKTHWFL
                     EKSSPEKKEIKLISK"
     gene            25115..25408
                     /locus_tag="IBJ56_000026"
     CDS             25115..25408
                     /locus_tag="IBJ56_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HAM3416315.1"
                     /translation="MLHIQAKVQVKPDLVAEFLVEVNLVIQGSLSETGNHGYELVHSV
                     ENANIFYILEKWTDEAAIQFHNGTEHYKRFKKNVPAFLAMPIEVDLLAPVERR"
     gene            complement(25633..26301)
                     /locus_tag="IBJ56_000027"
     CDS             complement(25633..26301)
                     /locus_tag="IBJ56_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416316.1"
                     /translation="MTLMMKNISKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAG
                     KSTFLSIAGALLSPTEGEIAIGGKVLNDLTSKELTKVRLDKVGFIFQGANLIPYLNVR
                     DQLLVIAELSGEKGRGAKEKADELLKELGLTARENNYPESLSGGEKQRVAIARALMND
                     PDIILADEPTASLDANRGHKVVQMIADEVKRKNKAAIMVTHDERVLDLVDRVIRIEDG
                     YLKD"
     gene            complement(26301..27389)
                     /locus_tag="IBJ56_000028"
     CDS             complement(26301..27389)
                     /locus_tag="IBJ56_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3416317.1"
                     /translation="MFLALRELKHAKLRYILIGLIMVLIAWLVLFVTGLANGLANDNG
                     AAISSNKATYYVLQKDSDNRLTRSNLTASETDSVAKQVKKSESTNLGVQMGTITPPNK
                     DKKTDITYFGIDKTGFMKPAITEGTEPEKTKEVVADISLKESGYKLGSKLKDSATGEE
                     FTITAFTKNNTFSHSPVIFVGWDAWKLVHQTNQAAEGEYNAVALDVSESTAKNLSLGS
                     MELSSSKEVLQGIPGYSEEQGSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGILKA
                     VGARTAYLGRSIVTQVVFLSVVSLLIGNGLTFGLAAILPASMPFTLSPVLAIGCSALF
                     LVVAVIGSMLSLYRVAKVDALEAIGRAN"
     gene            complement(27468..28847)
                     /locus_tag="IBJ56_000029"
     CDS             complement(27468..28847)
                     /locus_tag="IBJ56_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HAM3416318.1"
                     /translation="MKSLYSRIVVTMLVVIISSSLLGFFFANIYYQIKLKPFNDEKTA
                     KIAEEVQQFYESNATISLNEYLENVGELGYELYLTDGAEKSTYYGDAFRKKDLPDKTI
                     KQVLDGETYHGIDSFDTGIFITGFFDNDVRNTIGVPVQADGKQLALFIRQDPEKQFGE
                     LRIFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEI
                     GQLADSFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGSVTLTEKEQAE
                     YLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKE
                     LTINLDLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDS
                     GVGIGKEDMAKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGT
                     TFKVKLPKN"
     gene            complement(28844..29521)
                     /locus_tag="IBJ56_000030"
     CDS             complement(28844..29521)
                     /locus_tag="IBJ56_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3416319.1"
                     /translation="MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETE
                     QVHLAVIDVMMPNMDGFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTK
                     PFEPEELIFRIRALLRRSNQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLY
                     QLASYPGRIFTREELIERIWQRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVG
                     YKLEETT"
     gene            complement(29568..30353)
                     /gene="fdhD"
                     /locus_tag="IBJ56_000031"
     CDS             complement(29568..30353)
                     /gene="fdhD"
                     /locus_tag="IBJ56_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HAM3416320.1"
                     /translation="MDIVSHQKIRRFEAGTFQEIESSVATEYPLTIYVNDQELVTIVC
                     TPEYLEDLVVGFLTSEGIVRGPQDIDSVDIIEATGHAKVSANFVNKFNAKYRGKRYIT
                     SCCGKSRENFYFQSDASLVNVKQNGSLQLTTDMIFRLMENFEQNSATFHQTGGVHNAA
                     LCSSAEIIYSRMDIGRHNALDKIYGRALQDGTSTEDKAIIFSGRISSEILVKTAKLGC
                     GIILSRSAPTELAINMAEELNITTVGFIRGDRLNVYSGFERIT"
     gene            complement(30415..30891)
                     /locus_tag="IBJ56_000032"
     CDS             complement(30415..30891)
                     /locus_tag="IBJ56_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1641 domain-containing protein"
                     /protein_id="HAM3416321.1"
                     /translation="MAEPISTIRDTKKTPEELEHERLEQMKADIAEQDSGFVEIVETV
                     KLLQESGALEALNSAIKARGDITKTFLNEWRKEPMTNAINNMMISSKLLTDTKPEQTE
                     EMIANLKNAAKKAEESAKKDEIMGMLAMMKALKDPDINRALRYGVTFLKEVGQTLK"
     gene            complement(30891..33878)
                     /gene="fdhF"
                     /locus_tag="IBJ56_000033"
     CDS             complement(30891..33878)
                     /gene="fdhF"
                     /locus_tag="IBJ56_000033"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HAM3416322.1"
                     /translation="MGAKVSVQINGVARDVVEGTRILDYLNAEGIQHPHICYSEQIGP
                     IQSCDTCMCEVDGELMRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVC
                     DNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQ
                     VQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFM
                     TGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEV
                     WTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWED
                     AIHLVATKLREIQAKYGNDSIGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQ
                     APASDGLTRTVGIGADSGTVEDIETAGLVIIVGASPADGHPVLASRIKRAQKTRGQKL
                     IVSDLRKHEMAERSDLFMHPKQGTDFVWLTAVAKYMIDQGWHDEVFMENRISNVADYL
                     SFLEPFTLEYAEKETGLSVEILKKVAQMVYEADGTAVCWGMGVTQNIAGSHTSSAIAN
                     LLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGV
                     SISPEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILASLDFFVVQDVF
                     LSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVAKAC
                     GRTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLVWPVSADGKDMPLLYEERFN
                     FPDGKAQFSTLPYIAPITFPEEYNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVE
                     VSHELAKERDLESGSLVRLSSPYGRIKLRAVVTERMKGNEVYVPMHSVSSETAVNLLT
                     SSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVARKWSREDY
                     QPISKVNCACGGNCGCGGKRRNH"
     gene            34376..35218
                     /locus_tag="IBJ56_000034"
     CDS             34376..35218
                     /locus_tag="IBJ56_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HAM3416323.1"
                     /translation="MTKQLLVLQSDFGISDGAVSAMYGVINSVSKDLQIYDLTHQIPQ
                     FNIWEASYRLLQTVTYWPEDTIFVSIVDPGVGSKRRSVVVLTEDGHYIITPDNGTLTH
                     IAHYGTIKEVRLIDEEKNRLPKSGASHTFHGRDIFAYTAARLAAGVINFEDIGPSATP
                     DSIVSLSLSDSYLEGEQAFGTIDIIDRPFGNLWTNIRRTDFLQLGANYGDSIEVLIKH
                     HDRVVYKNFVTYSRSFADLRIGEALIYVNSLDNLGLGINQGSFVDAYSVGTGTSWKVT
                     LKKV"
     gene            complement(35268..36749)
                     /locus_tag="IBJ56_000035"
     CDS             complement(35268..36749)
                     /locus_tag="IBJ56_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HAM3416324.1"
                     /translation="MNSTAVERPVDVNGKSYSRSLLVVTMIIGAFVAILNQTLLATAL
                     PMIMDDLHITAATGQWLTTAFLLTNGIMIPITALLIEKISSKTLFITAMTVFTIGTII
                     ASVAGSFPVLLTGRIVQAAGAGIMMPLLQTIFLLIFPREKRGAAMGLMGLVIAFAPAI
                     GPTLSGWIVDSYDWRVLFLILIPIAVIDIILAFFGMKKVVKLTDTKIDFLSIVMSSIG
                     FGSLLYGFSSAGNDGWGDATVITMLIVGVVVIALFVWRQLVIDNPMLELHVFKYPVFS
                     LSVILGSIVTMAMIGAEIVLPLYIQTIRGESALQSGLLLLPGAIIMGIMSPITGIIFD
                     KIGAKWLTITGVTILTIGTIPFMFLTMDTPLWYIVVFYAVRFFGISMAMMPVSTAGMN
                     ALPNHLINHGSAVNNTIRQIAGSIGTAVLITVLTNVTKDNMPGKALMATDPASFAQKA
                     QDASLDGMRAAFMVAAIFAAIGMILSLFLKTKKQEPIVKEYTK"
     gene            complement(36850..37737)
                     /locus_tag="IBJ56_000036"
     CDS             complement(36850..37737)
                     /locus_tag="IBJ56_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3416325.1"
                     /translation="MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYF
                     TSKEELAIVIFKQEYSVLHQRLEYTMGLDGTKKDNFTECLKIIIHFYTENGEILNITF
                     SQTMIDDDFNAFLQNVRLKNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFAS
                     GSKNVDSGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAK
                     LRGALEELNVGIENADIDDSDKWQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHV
                     PASLTKEVNKLEACVNGLL"
     gene            complement(37890..37962)
                     /locus_tag="IBJ56_000037"
     tRNA            complement(37890..37962)
                     /locus_tag="IBJ56_000037"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37927..37929),aa:Thr,seq:ggt)
BASE COUNT        11254 a         8240 c         6519 g        11968 t
ORIGIN      
        1 ttcttcctac taaaataagc gcagcgatga caataacatg cacaccaaac cctagtaaaa
       61 caaggaattt caattgtgtc acgccagtca ttaaataatg aataccaaaa atcaagataa
      121 ctaaaaagtt cagtacgacc atcgcttggt aaataatgaa ttttacaagt aagactgaac
      181 ttcctcgccc cgcatccatg ccttgcttcg tcaacataac gagttgcgca ggctgtccgc
      241 cagtcgccat tggagtaatg gtattaaaaa attggccaat cattgtaatc cggaatgacg
      301 aaaaaaaacg ttggtcctta ttcgctggtt tagatgcagt ttgtaaaaca accgcttcta
      361 aaaaccaata aataaacatt gcagcaaagg cagccgagag ccaccaaggg ttcactttta
      421 acatcgaagc aaaaaaagtg gagatatcta cgccttgaaa ttgccaaata atgaagccga
      481 tgctaatggc taatacaatc gcaatattaa ataggttttt ctttgcgcct ccactcatta
      541 cctttcactc cttcgttaat aatccttgat aaaagtccaa ccatatttca gccagtcgat
      601 cctctgaata ataagccgct cctcgttttg atgcttgtaa catttcatta taataatttg
      661 tatcattttc taaacgttcg atatccctaa taaaaccagg gttatctact tcttttacat
      721 aatagccatc taaaatttct tcatacagat ctaaatttcg taataatatc ggaacatcac
      781 aactcatcgc ttccaaaatc gccattggaa ataattcgtt gtaagatggc ataaagaaca
      841 catctgccat attaatacat gaattcattt cagaacgatc cacaattcca atgaatttca
      901 cattacttgg tggattatca tagattttct tcaattcctc gtagccagaa gtgattttac
      961 caaaagaaaa tccgcctgcc caaacaaatt gaacatcagg aagttgttta gcaacctcaa
     1021 taaaatcaag cacaccttta cgatgttgca cttgaccaat tccaatcacg gtaaatttat
     1081 ccgccggaat ttcatatttt gcccgagcaa gttctttttc tccttttgaa atggggaaaa
     1141 agctcttttt tgaaacgaaa ttcgggatat aatgaatttt ttctgctgga atattataag
     1201 ccgtaagttt gggaataaaa gagggattta caacaacaat ctcatccatt cgtttataaa
     1261 aaccaatcaa atatttatag aaaactacgc gggcaatcca aggtaatttg aggctccctt
     1321 ccattgtttc gggtaaaaaa tggacatatc cgacccgaac gcctcgtttc ttcttaaaaa
     1381 aagtcgaaag aaaaaaacgg aaatcaacgg tatggtaatg cgtgatatcc gatttctcaa
     1441 aactattaat cttcatatca atttcattct tatatcgttc ttctagcaaa ttcacaagtt
     1501 cgcggtaagc tgatgccaca ccctgacctt ttactttttc tgccgaagat agcattgtca
     1561 acttaatcac gccgcgatga cctctctttc ctttgaacgt gtgtagaaga tgatagtgaa
     1621 aatacttgtg aagctatttt actttttatc agcgtgggct ttactttaat cgtcccattt
     1681 tggcgcttta ctcggtatat ttcacgaact tcattgtatg tagattcaat gttgattcca
     1741 aattgatccg cagaaatgga ttccactttt actcggccat tcgtagcgac caatgtggct
     1801 gtatttttgt ctgaaagtat atttattaac agtgatgcaa gctcatcatc ttcattgaat
     1861 aaaaaggctg tttctctgtc gcttaaaaag ccttcaatac tttcatcacg tttggcaaca
     1921 actggtaaag aagcggccat tgcttctgca taagtcaaac cttgtgtttc tgtcgttgaa
     1981 gcactcacaa acagatcccc taattgataa tataaactaa tattttccca gtctactgca
     2041 ccagtgaaaa taacatgatc tgctaattgt ttttcttcta ctaatttttc taagtctttg
     2101 cgcacaggac catcgccaac aataaccaat ttggctgtgg ttttggtttg aaggacttct
     2161 ggcattgcat taataatcgc atcgatattt ttttcatgcg caattcttcc aagtgatagt
     2221 atcactggat cattttctcc aataccaagt agtttcttca agtttagaat tcgctgtttt
     2281 tcaactggcg cgaacgatga aatatctgtg cctgttggaa cagtgtacat taatttgtgg
     2341 ataccttgct cttctaagtg atgccttact tttgcagttg gagtgattat ggcatcatag
     2401 ctatcacaga acgattttgt cattttaccc accatagaag gtgtcaaaat tttacctttc
     2461 gcaatataat gcaagtaatc gacatacatt gtgtggtagg tatggataga tggaatatga
     2521 tattttttag caattcgctt acctaataga cctaatgaaa actccgtatg tgtgtgaatt
     2581 atatctaaat ccaagcgccc tactagctta ataaacttat tcattccagc aattgctacg
     2641 cgacgttctg ggaaaaagac aaacggaata cttggtaaac gaaacacacg gccctcttcg
     2701 ctctctctat cagcgtttgg gtcagttgtt gtaaatatat acacagtgtg cccttgtttt
     2761 cttagttcgt tttccataat cattatcgat gtagctacac cgctaatttg cggactgtag
     2821 gtatccgtaa aaatccctat attcattact atcgcctact ctcttcctcg ttggttcatt
     2881 catcatttaa tatattatta taacataact atagtaagtc gtatcacata actaactaca
     2941 ttatggctca tttatttaga taaaacatgc gcctgaagca tgatttttta tcgggaaatt
     3001 tagattgatt cagtctatta aatgaaagct atagttatca taccatatta gtcttaataa
     3061 cgataattaa attccctcta tactaaccct cgaaatacat aaaaaataac tggtaaaatc
     3121 aacaagtgat cctaccagtt atttttatat catcataaag ttcgtcttac gctttaccgt
     3181 tagaaccaaa ctcttgaatt ttttctgtta cagttttgat aatcgcgtcc acaccagggc
     3241 cgattacttt acgtggatca taaactttgt catcagtagc taatttttcg cgaacagctg
     3301 cagtccaaac gatttggcat tcagtgttaa cgttgatttt actgtgacct agttcaattg
     3361 cttttttgat ttggtgttca ggaattccag aaccaccgtg aagtacaagt ggagcacctg
     3421 taagttcgga gatttctttc atttcgtcaa aaccaagaac aggttcgccg tggtaaggac
     3481 cgtgaacaga acctaatgct gcagctagtg catcaatgtt agcttcttta actacacgta
     3541 aacattcttg tggatcagca tagttgattc cgccagtaac tccgtcttcg tctccaccaa
     3601 cagttccaat ttcagcttca acagatacgc ctttagcatg cgcatagtca acaacttgtt
     3661 tagtcattgc aatgttttcg tcgattgggt ggtgagagcc gtcgatcatt acagaagaga
     3721 atcctgcatc gatagccgct ttacaagaat caaagcttga accatgatca agatgaatcg
     3781 caacaggtac agtgattttc aggtcttcta caagtccttc agtcattttt acaactgttt
     3841 tgaatcctcc catgtattta gcagctcctt cagaaactcc taaaataact ggtgcttttt
     3901 ctgcttctgc agctttcaaa atagcttgag tccattcaag gttgttgatg ttgaattgac
     3961 caacagcata ttttccagct aatgcttttt tcagcatgtc tgtcatgtta acgataggca
     4021 taatacaatt tcctccctca ggaatttagg aaaaccattt tgattttccc taagatttga
     4081 atttccgccg tgaaaaatag tggcagctat tttcccctaa caaacatatg ataacagatt
     4141 tgtgatgaat ttaccataaa aactagaaaa ttttctagtg taaacgcttt agcctctaag
     4201 acgggaagaa atccgatttg tatcagcaaa tacttctaat gcttctggga ttacctctaa
     4261 tgtatacggt gcttttcctc catatacacc atcatagcta acatttaaat ctgcttcgct
     4321 gtttatagta actttatttg ttcgcgcatg gattacatgc ggactactta agtgtgtacc
     4381 cttttttata gaagcaaata attgaaataa tgttttagga gagactttct ttaaaattaa
     4441 taactcaaac attccactat ttaattcagc aggaggacac aatgtctcca taccaccgac
     4501 cgagttggac ttatttacaa aaaacagcaa aatctcacct ttaaatattt tatcgttata
     4561 tgcaatttcg acgtacactg gtgatagttt tggaagaaca gttaaaccgc taaacagata
     4621 agcaagtctg ccccatttgg atttcattga ttcttttaca gcataagtta tttcggttat
     4681 tttcccacca gctgcgttat taatgaaaaa ttcggtctca ttggctttac cgatatcgac
     4741 acgaattgtt tcttgcttgg ctataattcg aagtgcttcg agtggatttt tagcaaaatt
     4801 taacgctctc gcataatcat tcgtcgttcc aaccggtaac actcctagtt tcggtggggt
     4861 atcaacttgc atcaacccat taacaacttc atttactgta ccatctccac ctgctgcaat
     4921 tacaacatca aaaccggctt ctgcagcttg tttggcaata aatgtagtac ttttaggtgc
     4981 tggagttgat gggactaaag ttacttcaaa atctgcttct gttaaaattt tttctgcatc
     5041 cggaagtaat tttctaaact tatttttacc cgctgccgga ttgtatatta tcatcgcttt
     5101 cttttgcaaa ttgccgctcc ctctttccta tatatataat ttagtttcct attttggcct
     5161 taggatgtca acttgtttga ctgaaagaaa acgctagtta aattgaaggg ctttttacct
     5221 attacaattc acatacatta aattagttaa aattacattt tgggacacca tatcgaaatt
     5281 ttattgcttt tacagaaaaa aacatacgta aataggttca ttgttaccaa tatccattga
     5341 ctacaaccag gcgtgttgtc ataattagaa ataaaatact tttatttaat ataaaaagta
     5401 gtgcagttag gagaggattt aaactttgaa aaaattagta aaatcggcgg ttgtttttgc
     5461 aagccttgtt tttattggca cctccgctac tatgattaca gaaaaagcaa gtgctgcttc
     5521 cattgatccg gtgcaaaaag cagatggtca agctacttat atcccaaaag gagttagaga
     5581 tgggactgca acggaagaac atgacggctt tgaagatgga actaatagcg tactacagca
     5641 agtccctttg cttcgcgcaa caacaggata ccctgatgtt aatgcctata ttaaatcaaa
     5701 caaattttca acagcaaaaa tagaaaaaca attaaaaagc caatttccta aattcaacta
     5761 tcgtaatggt tacggcaaac cagaaggaat agttattcat gaaacagcaa ataattcatc
     5821 tactattaca ggtgaaatca attatatgag taccaactac aacaatgcct ttgttcacgc
     5881 ttttgtagac aagtctcgta taatccaaat ccatcctact gaaaatggtg tttggggagc
     5941 aggacaatat gctaatgctc gttttatcca agttgaatta gttcgttcga agacattcga
     6001 tgaatttgct cgttctatta ataactatgc ctattatgct gcgtaccttt tagatcaata
     6061 taaccttcct gttgatagcg cgcacagtga cggcaaagga acagtctggt cccacgatgc
     6121 agttacacgt tatttaggcg gaacaaccca tactgatcct gtttcttatt tcaaccaatg
     6181 gggttataat ttcaatagtt ttgttacatt gattaatgaa aagtacaaag cgattcaagc
     6241 tagcaaagtt acttacgaca aaatcgaata cgataaaggc gtcacagcct acgctagagt
     6301 taaaactgca cctggtaatg cagtttggac aaaaccttac agaacagaag gctcgaaact
     6361 agttaatcaa ctttctgtct accaaggtaa aaacatgcgg atcttgcgtg aagctaaaac
     6421 accaattact acttggtatc aattcagcat tgacgggaaa gtaatcggtt gggttgatac
     6481 tcgtgcactc gatacgttct acaaacaaag catggaacaa ccagctaatt taactcgcta
     6541 tgtcgcttcc aacaaaactg gtgaggccta ctacaaagta cctgttgttg atgcggatgt
     6601 caaatggggc actttagctg cttataaaga tcaaaaacta accgtggata aacaagcaac
     6661 ggtggaaggg caactttggt atcgcgttag aacaagcact acctttattg gttggacgaa
     6721 agcttccaac ttaacagcta cctctccatt tgataagatt gaatacgata aaggtgtcac
     6781 agcctatgct agagttaaaa ctgcacctgg taatgccgtt tggacaaaac cttacagaac
     6841 ggaaggctct aaacttgtca atcaactttc ggtctaccaa ggcaaaaaca tgcggatctt
     6901 gcgcgaagct aaaacagtaa ttactacctg gtatcaattt agtattgatg ggaaagtaat
     6961 cggttgggtt gatactcgtg cactcgatac gttctataag caaagcatgg agaaagatac
     7021 taatttaact cgctatgtga ttgcgaacaa agtaaacgaa gcgtactaca aagtgcctgt
     7081 tgtggatgcg gatgttagat ggggcacttt agctgcttat aaagatcaaa aactaaccgt
     7141 ggataaacaa gcaacggtcg aaggacagct ttggtaccgc gttagaacaa gcactacttt
     7201 tatcggttgg acaaaagctt cgaacttaac aacaactacg ccatacgata aaattgaata
     7261 tgataaaggc gccacagcct atgctagagt aaaaactgcg ccaggcaatg ccgtttggac
     7321 aaaaccttac agaacggaag gctctaaact tgttaatcaa ctttcggtct accaaggtaa
     7381 aaacatgcga atcttgcgcg aagctaaaac agtaattact acctggtatc aattcagcat
     7441 tgacgggaaa gtaatcggtt gggttgatac tcgtgcactc gatacgttct ataagcaaag
     7501 catggagaaa gatactaatt taactcgcta tgtgattgcg aacaaagtaa acgaagcgta
     7561 ctacaaagtt cctgttgtag atgcggatgt tagatggggc actttagctg cttacaaagg
     7621 tcaaaaacta accgtggata aacaagcaac ggtcgaaggg caactttggt atcgaataag
     7681 aacaagctcc acctttattg gttggacaaa agcttcgaac cttagtgcta ctaaataata
     7741 ataataaaaa tctcccagcc aattatggct gggagatttt tattattacc ttatttatta
     7801 ttaagtgcag cgccaacaaa atctttaaac aagctttgcg gacgatttgg acgagaaatg
     7861 aattctgggt gatattgaca agcgacaaac caaggatgat cagctaattc aactacttca
     7921 actaaacgac catctggact tgttgcagaa acaatcatac cagcttcttc catctgctct
     7981 ctatattcgt tattaaactc ataacgatga cggtgacgct cttcaacaag agttgtacca
     8041 taagcggcct cggctttagt accttgctta atacgcgctg gataaagtcc taaacgaagt
     8101 gttccgccca tgttttcgat gttcttttgt tctggtaata aatcaatgat gttatgtttt
     8161 gtttctggtt cgatttctgc agaatgagct ccttcaagac caagaacatt acgggcaaat
     8221 tcaacagttg ctagttgcat tcctaaacaa ataccaaaat aaggcacttt gtttacgcgt
     8281 gcatattcaa tagcagcaat tttaccttca atggcacggt cgccgaaacc accaggaact
     8341 aagataccat caacgtcttt catgatttca gcaacatttt cttttgttac tttttcggaa
     8401 tcaatccagt caatttcgat ttctgcatca tgatcatatc ctgcatgacg aagtgcttct
     8461 gctacagaaa ggtaagcatc ttgcaaggaa acatatttac caactaggcc aatacgaact
     8521 tttttggaaa ggtttttcac acggtgtact aagtttttcc aatccgtcat ttccgcttgt
     8581 ggtgcttcta attgtaagtg ctcaaggacg atatcatcca ttttttgttt ttgtagagaa
     8641 agtggtacgt tataaagtgt ttcttcatcg cgagattcaa taacctcgga agctttaata
     8701 tcacagaata gcgcaatctt atctttcatt tcttgtgaaa ctggctgctc tgtgcgaaca
     8761 acgataatgt ttggttgaat tcctaagcta cgaagctctt ttacactatg ttgtgttggt
     8821 ttagttttca tttcgccagc tgctttgatg taaggaatta aagttgtgtg gatataaagt
     8881 acgttttctg caccaacatc acttttaatt tggcgaattg cttctaagaa tggtaaagat
     8941 tcgatatccc caactgttcc accaatttca gtgatgataa tatctgaatt ggtcatgcgc
     9001 gctgcacgga aaacacggtc ttttaattcg tttgtaatgt gtggaataac ttgcactgtt
     9061 ccacctaagt aatccccgcg acgttctttt ttaataactt ccgagtaaac tttaccagtt
     9121 gtcacgttgc tgtatttatt taagttaata tcgataaaac gttcgtaatg gccaaggtct
     9181 aggtccgttt ccgcgccgtc atctgtcaca taaacttccc cgtgttggta tggactcatt
     9241 gttcctggat ctacgttgat gtatggatca aatttttgaa tggttacact aagtccacga
     9301 tttttcagca aacgtccgag tgatgctgct gtgattcctt ttccgattga cgaaactacg
     9361 ccacctgtaa cgaaaatata ctttgtcatg ttaaaaaaat ctactccttc ctgaaatgaa
     9421 aaacttgcag ggtctgacga ttttcctgct ggggtgggaa attgccagat aaaacaatat
     9481 tgtgattatc tctctagcac acaaatcaca atttcaagta ttttgtaaac caaaataaaa
     9541 aacactccgc ctacttttaa aagtaaggga gcgctgattc tcataaatat ccgtccctat
     9601 aaaagggagc ccaaataaaa tactactaat gatggcgata gaagtcaagt ctttatttta
     9661 tgaaaccgcc atcaatccat taagtaggct aaaaaaaatc agacagacac ttttccacaa
     9721 aaatggacgc atctatctga ttaaaattag ttattattta tcttctgggt cttctgtata
     9781 atccccgtcc gtataatcat cttctacagt tgctaagtcg ccttcgattc cgtctggcaa
     9841 gtgatcatcg tcatcttcgt cttcatcaag taagacatct gcaagagaaa tttcttcttc
     9901 accaagctct tccacgattt cttcatcatc gtagtccacg tcatcatcca agatttcttc
     9961 atcttcatcg tcatcatcgt ctgatttacg ttttttcttc ggtgttgttt gtgtttgaac
    10021 ttcttcatca atcgcatcca ttggatacca tgcacgaagt ccccacgtgt tgtttcctag
    10081 tgaaataaag tttccatcaa tattcatatc tgtataaaat tgaacaagac gctcccttat
    10141 ttctgcatct ttcaaaccta ggaacgcttg aatctctttc actaattcag ggaaaagaat
    10201 agtttctttc cgctgttcca aaataaaatg tgcaacatca attaaagata gttcactacg
    10261 ttcttcttgc gttaagttct ttaaatccaa aactggcacg ccctttctat cgtaattcca
    10321 atttatttag ctgttatttt ttcgttcagc ccaacttcac tattttacat gttatttctg
    10381 gcaagtacaa cctaaatttt cttaattaca tcaattcttc ttgactattt gatatccgat
    10441 gtaaaagaaa aggatggcca ttaaaagaat tgggattgat ccaagttgaa agtcgtagag
    10501 aatatagatt gcgacgcaca gaaacacgaa aagcagcgcc aaaattatta atcgcttcat
    10561 catatgctct ccccgttttt tcaattacct atgtttctat taactttagt acattttggt
    10621 tatgacgtca acgagtaacc tataaattta ggatatcaca ttttttctgg tgctgataca
    10681 cctaaaagcg tcaaaccatt tctaagggta atttgcgcag tcttaataag tgctagtctt
    10741 gcttttgtta cttctaaatt atccatatca agtactttat tgctattgta gaaacggtgg
    10801 aaggaagacg ctaaatcatt taagtagcga acgatacggt gtggcgctct ttttgtagca
    10861 gcttccgcaa caacatccgc gaactcacct aacactttta ataaatcata ttctgcttct
    10921 gtttgcagta agctcatgtc tgcgtctttt gttacctcta gaccttgttc tttaccagaa
    10981 cgtaaaatgc tagaaattct ggcgtgcgca tattgtacat aataaactgg attatcatta
    11041 gatgtagatt tcgctaagct catatcaaag ttcatatgtg tatctgaact acgcattgca
    11101 aagaaatatc ttgttgcatc cagtccaact tcttcaatta agtcacgcat tgtaactgat
    11161 ttaccagtac gtttactcat tttaacttga acaccgtctt caaataagtg aactagctga
    11221 atgatttcta cttctaattg atttggtgag tagccaagcg cttcaattgc agcacgcata
    11281 cgaggaatat agccgtggtg atcagctccc caaatatcaa ttaacacatc aaagccacgc
    11341 tctaatttgt ttaagtggta cgcgatatct ggtaagaaat acgtataact accatctgat
    11401 ttgattaaaa cacggtcttt gtcatcttca aaatcagtcg ttcttaacca tgtcgcgcca
    11461 tcttgctcat aaatatagcc attttcgcgt aaacgttcta acgctggtaa tactttattt
    11521 tcttcgtata aagaagtttc tgagaaccac tcatcaaagg aaacgcggaa ttcttctaag
    11581 tcagcgcgta attttcctgt ttcaaacgct aatgcatcta cacggaaaac ggaacggcgc
    11641 tcttcttcgc ttgtgtgcac atatttatcg ccgtatttag cagctaaatc tttcccaagc
    11701 gaaataatat ccgcaccacg gtagccatcc tctgggaatt cagaatctaa acctagtgct
    11761 tcaaagtaac gcgcttctgc tgaaagaact aaattattaa tttgatttcc agcatcatta
    11821 atgtagtatt ctcttgaaac atcaaatccg gccattttca taatatttgc taacgagtcg
    11881 ccaattgctg cgccacgagc atgtcctaaa tgcaagtcac cagttgggtt cgcggaaaca
    11941 aattcaattt ggaatttttc tcctttacca aaatcagact ctccgtattt tttatcttcg
    12001 gttaaaatca caggaactaa atcagttaaa taagcattat ctaggtagaa gttgataaaa
    12061 cccggcccag cgatttctac ttctttaatt aatttgttgt ctttttttag ttctggaacg
    12121 atactttcgg caatttggcg aggggctttc ttagctactc tagcaagttg catcgctata
    12181 ttagtcgaat aatctccatg ctttttatct tttggtactt ctagtaaaat ttctggtact
    12241 tccgcttctt ctaaaccaac cgcttgaaca actgcttgtt tgatatgttc aattaatttg
    12301 atttggttct cttgcatgac attcattctg cgtcctcctc tattttcatt aaaacagtat
    12361 atgagccaat gtattcgccg tggcttagca aatcatattg aaatgcgact tcactcagta
    12421 catcaggctt attttcatat agttcttcca ttgatactag ttctgattct aattgtaatt
    12481 tccctgctcc ggaatcaaca gacgcagtac ttctcctatt atctcggaaa aagtgcattc
    12541 tcatatttac ggcaccactt ctcattaaaa gtagttcgtt gtcagcaatt tttagaaccg
    12601 tacgaattgt tccagctaat tgtttttcct cataatgcag ataacgattg cctttatcgc
    12661 ggtaaaaaac acccgaaaca gacatatcgg atttctcttc tgcatccatc tgacggatga
    12721 cattggtgat atgaatagtt actttttttc gttccatttg gttggcagtc atatcgctta
    12781 tttacccctt tccggtcaga agaatagacg cattatatta tagtgaaaaa taacatgaaa
    12841 agcaacaggt taaaatgatg tcagaccaaa tattgtcaaa atcacattta aaacaaatgg
    12901 aataacggta ttaaaaattg gttgaatcgt aaattctgaa ataggtgtta atgcaactac
    12961 taagaaaata agcatcgcat agcgttcaag tggttccagc ttagacctgg ttgacattgg
    13021 cagaaactcc actagtattt gatacccatc aagcggcggt agcggaatca agttaaacac
    13081 aaacaagact agatttaatt gcacaaaaat cattaaaaaa gtttccgcaa cggagccata
    13141 tgtaaagaag gaataattta gaaataaagc atataacccc acaccaacca tcgcaagtag
    13201 taaattactt actggtcctg caagcgaaac aagtatactt ccaaggcggc gtttttttaa
    13261 tttaaatcga tttaccgggg tcggcttagc ccaaccaaag cctgcaatta atatcattag
    13321 caaaccgaat aaatcaatat gtacaacggg gtttaaagag agtctcccct catttttagc
    13381 tgtatcatct ccaaatgcga gagcaaccaa ggcgtgtgcc cattcatgaa tagtaaaagc
    13441 aattaataat gtaactaaaa catacggtat catttcgagt ggatacgcga gaaaactagg
    13501 cataggagcc tcctttatct tttattgagc aatttttata tgctataatg aaaaaaacgt
    13561 tgatcgaggt gagaaaatgc catttgttac cattcaattt ttagaaggtc gtacggacga
    13621 tcaaaagaaa gctttagtta gcgaagtgac ggaagttgtt gccaaaaatc taaaagcacc
    13681 aaaagaaaac attcatgtga ttttagaaga aatgaaaaaa acggattacg gtgttggcgg
    13741 cgtaaggaaa tctgatattt aagtgtgtaa gaagcaaggc atttcgcctt gcttttttat
    13801 ttttccttta acgaatgcgc atggatgagg gcgatcattc tctcggtgat tgcttcttcc
    13861 acgtgtccac tttcgataaa atcgagcgga taatataatt taatatcggt ccggcgctct
    13921 cgaccaatcg cctcaacaac cggagactcg gtcgataact cacgcaattc cccatttccc
    13981 atcaatagtt taattgggtc tttgccactt cccactccag gaagatagta atcataaggt
    14041 aaatcgctgg aagaatcaat tactaaataa taagacggat caatatcggc cttttcaaga
    14101 agtcctttta gttctgcgta aagttctgca tcttctttcg gatcgtagtt aatgtatcgt
    14161 agcaatcttc tattcaaaaa gcgactacat aaatcactca aaatcggatc ttcttcctct
    14221 tgccaaatag aaaaatagta catcaacaca atatcatcaa gcacaatata atcttttaaa
    14281 ctcacttcat ttaaaaagaa tggtagcact tgaatagggg tagcttgaaa ttcatatcca
    14341 gcacaatata actttttggc acgctcaagg attttccata atagcacttc accgctacga
    14401 ctaactggat gaaaatacac ttgttgatac atttgataac gactcataat ataatcttct
    14461 accgcatgca tgccagaata ttttacaata acaccattgc catctgggct tgggcgtaga
    14521 actcgcaaaa tccgctctaa atcaaacttt ccatagctca ctccagtata ataggcatct
    14581 cgcagcaaat aatccattcg gtcagcatca atctgactcg aaatcaactt caccaatgtt
    14641 tgattcggat aatttttctt aataatagca gcaactttaa gcggaaattc ttctcctgct
    14701 ctcatcaata ttttattaac ttccgtatct ccaataatta tctcttgcgt gtatgattca
    14761 tggtccgttc caaatacttt ttcaaaagcg tgagaaaatg gtccgtgacc taaatcatgc
    14821 aaaagcgctg cacacaatgc caccatgcgc tcctctggat ccagttgtgg ttcattcgca
    14881 aatgtgacat cgattatttg ccgaacaatt tcgtaaacgc ctaacgaatg attaaaacgg
    14941 ctatgttccg ccccatgaaa agtaagtgaa gttgtcccca attgatggat acgccgcaaa
    15001 cgctgaaact cttttgtagc aatcaaatcc caaattatct tatcagaaac atgtacatat
    15061 ccatgaaccg ggtctttgaa tactttctct tcccttagtt tctctgttaa ataactcata
    15121 caacctcctc ctctcaagta agcactttat catttcgggc aattaaacgt tcataatagg
    15181 ctgggaaaag atctaactct tcagacgtaa gcgtaccaga tacaagctca cctgcgtaat
    15241 gccgcaaact gttgaaaagg cgtactaacg ttccatttaa acttatatca tttttcatta
    15301 agtccgaaag cgaacccata acattcggat tcacatctgg aaaagtatat tttgtttgct
    15361 ttgcttttcc gctaatcgta tagaaatcgc ggatcagttc tgagcgagta gtttgatccc
    15421 catcaatagc taaataaatt tggaccgcta ccccttttgc cattctacgc tgagaaatac
    15481 cagcgaattt tttcccttga atactaaggt cgtaactacc aggacaataa gagtcttcta
    15541 tttcttttgc ttcaattacc tcattacaat ctacgaacat gtctttgata agcgtaaaca
    15601 tcgtttcata accacgctca atcgcaattc cgcgttctgc atctgggagc accatagaca
    15661 aattaagtac ccctgaatca aggacaactg ctaaaccacc ggaatttcta actacaacac
    15721 ggtagccttg ttcttgtaaa aaggcaattc ctttatctat atcaggcaac ttagaatctt
    15781 gaattccaag ggaaactgtt ttttcatgca cccagccgcg aacagtagat ggcgccattc
    15841 ttgctccgac cgagcgacat agcgtatcat ctgtcgcaaa tgattgaatg gcatcgaaag
    15901 ccggattaat cgttgtatta tcaataaatc gccacacatc ttgttttagt aaggtgtctt
    15961 ctatattcat ctctatgtcc tccatgattt tctttttgtt attatagcat accgacagca
    16021 aaattagatg caaatggctt aaaatagcca tttaatcatg aataacaatt tttgagcggt
    16081 tatttgactt ttttacgctt aatgttgaaa actatggctg taatgattga tataacaact
    16141 gatttgagaa ttatatcttt tttcattttc atcgcctcat ttcctcctct tattataaca
    16201 aacttaccat acaaaaaaac ctaacttctg taaaagaaat taggttcaat atatctaaaa
    16261 gcctagggag cttttttagc aaatgtatta ccagttgtag cggtcttcat tgtcgcggct
    16321 cgagcgtttt ggagaattac cccacatacg ataaagcaga tatccaatac cacctagtat
    16381 aagtactggg aataagaagt gaagcgtgat tccaacgata tcaagtacga tattaagtgc
    16441 gataaatcct aaaataactg taaaaaatat tttccaaaaa ctattcatga ttttttcctc
    16501 ttttctaatt ttatttacta cttgcaagtg gaacactgtt tatttccttg gcttggacga
    16561 gtaattcatt gtcttgaacg acgattttgt actgtttatt ctttttaagt tgtgttgttg
    16621 acatgaagtt aactttgtga ctgtttcctt gattatctaa acacgattcc cggaatgagt
    16681 accctttaaa ttttgacttg gtaacttctt ttccatcgtt tttgattgta acgtaatatg
    16741 tatttgctgc cgatccaatt ggtgctgaaa attcaattac aaccattgtt aatacaaaaa
    16801 ttgcagccag taaaccgaaa agtccctttt tcattgtttt taccgtcctt ttttgttgat
    16861 aggtttatta tagaggagat caaaaaaagg aacgaacggc tctaggctga aaattggtac
    16921 atcctaagtc ttattttctt tcgggtataa aaatagagcc tagtttggtt aactagactc
    16981 ttttaaatta atttttttca atccatttgt agttttctga accgattgga tacgtggtgt
    17041 agtttttcag gttgcttttt tgcaagtacg cgcggccacc ttggtatagc gggataagca
    17101 cggcgttatc tttaagtaaa atttgttctg cttctagtag tgcttgccat cttttttctg
    17161 ggtctgccga aagtttaccc ttggctccta ggactaattc atcgtattta gcatccgaga
    17221 agcctgtgtg gttccccggg ctgtttgtta agaataggtt gaggtatgtg agcggatctt
    17281 gataatcgcc accccatcca cctagtaaca gttcaaaatc ttgtgtcaca tctgcttgga
    17341 aactcgcttg gtttgtgaca ttttttaatt tgattgttag tccaggcaga ttttcttcta
    17401 attgattttg gataaattct gtttgtttgc gttgcaagga cgtgtcgcca cttgttaacg
    17461 taagtgttaa ttcggttttc ccgatttctt tcaagccttg cttccatgcg tttgtagctt
    17521 cttgttggtc aaacttgagt aagtcgccgt tttgtttacg gaaatcctct tttgtctctg
    17581 ggtcaaacat gatatcaccg ggaacatccc cgtttaatgc tttagatcca tttgcaagta
    17641 gtgtattgac catgccagtc ttatcgatag ccatcgctaa accgcgacgt aagtttaagt
    17701 tagctaaatc cgttttcacg ccatctttgc cttggttcat tttcatataa acagagcgtc
    17761 cagttgcttc tttatggaag tttttatcat ctttgtattg tttaacaaat tcaccatcaa
    17821 gctctacgcg gtccaattta tttgtattgt ataagtttaa agccgcatta gtatctttta
    17881 caacagttac atggattttt ttagttggaa cgttcttttt atcccagtaa gtaggatttt
    17941 taacgtaatc ccatgtcata tttgttccat tccaattttc taatttatac gggccgttgg
    18001 aaatcaatgt gtcgctttta gtcccataac ggtcaccttg tttttctaca aacgcttggt
    18061 tttgtgggaa gaacgtgccc gtcgttagga gttctttgaa tattggcacc gggttttcta
    18121 gttcgatttg tagtgttttg tcgtctaacg ctttgattcc aagttcatcc ggtgacattt
    18181 caccttttaa aatttgggta gcatttttga cgatttcctc catttgcggt ccgtatgcag
    18241 cggctgtttt tggatccacc acttttttcc aagcgtattc aaaatcatgc gccgtcactg
    18301 ggtcgccatt ggaccaatta gcatcttcgc gaattttaaa aataagtgtt ttcccgccat
    18361 ctttttcttc aggttcactg gcagctagag cgagtgccgg tttcccgttt ttatctaatc
    18421 gatataatcc ttcaaaaatt tgattgatta ctcggaaact tacgctattg tctgcgagtg
    18481 ttggacttgc attcggaatt ccactcgttt ccatgatgtt aaccactttg gatttcttgt
    18541 cggatgttac tttttcattt tcccctttat tgccagactg acatgctgta agtgctagta
    18601 aacataataa actgagtgcc actaccattt ttctggctgt tttatgcaat atttctcctc
    18661 ctcttttgta agcgcttttt gattacgcaa aaaaatgacg gacttcctgc caaattcgcg
    18721 cagaacttcc gccaccatta taaaccgaaa ctgtatcaat tgtaaataaa aactgttata
    18781 tttttatttc ttattaaggt aaactcctga cccaacaaca ataacacaca tcgtcatcaa
    18841 cattgctagc attaagtaac tgggatcatt gcgcataaac aaagcaagaa taaaacagat
    18901 tgtaccagct atattaagtg taacagttgt gatttttcta agtaggtttc ttgaccatgc
    18961 atcgatcttt ttaaaaccaa tcatcgttaa aaatttaaag agttttttcg agtattgaat
    19021 gtaggccgca acaacgaaca tgaatgctcc tgctgtgact agagaaaatc taccagtcgg
    19081 gatatcgtaa cctagcgcgt atacaataat actcatttga atgattgtta acagcactaa
    19141 caacagtcta aaacaatatt caaattccaa caaactctct tgattcactt tttcttttcc
    19201 gtaatattcc gttcccgtaa acataatcat taaaaaagga atcagaatta agccaagcca
    19261 cttttgcata aacatatctg gggagaagtc cgtaccgaaa tgcaccgcca cttcagaagg
    19321 tagtagcgga tataacacag cagaaattcc tactgtgaaa agaattatca tactaggaaa
    19381 tataccaact ttcctcattc ccctcacctc ttccaatata attactggca ataggcgaca
    19441 agttcctccc ttgtttcgat aagttgcact ttctcggtat ttgctaattg ctctttcgtt
    19501 tcatcaaaac cttgttcaga taatgcacgt gtcgctggta aataaactaa tacagaaaag
    19561 cctgccctac ttaactgtat aaccgtagtt ttcacacaaa aatcaaaagc taaacctcca
    19621 acaagaacta aatcgacttt ttgttcccgt aaatattcta gaacacctgt tgaaagctgt
    19681 tcaacaatat cgtggtaaca agcgccgtac ggatgaatat ccggctccat acctttccaa
    19741 ataaagtaat cataatcagt cacaactggt aaaccatcta ataattcaaa accttttgta
    19801 cctggttcac agtgccttac ccaagtacgg tctgcatttg gatattcgag ttcagccagc
    19861 atttcgtctt tggaatccac tacccatacg gcattttgcg gatgggcgtc cttactacca
    19921 attcgaagag aagcaagact tgccataaaa ttaagttctg gcacaatttt gtctccgccc
    19981 gaaaccggta attcatcggg acaaagcggc gtaaaacctt tttgtgcatc aatatcaaaa
    20041 gcagcaattt tcatttaatt ttcctccaag tttttatacg ttagttgggc aaactggccg
    20101 aaacgagtta cttcttctag ctctagcgcg tgctctctat cttcttcaaa gagtggaatt
    20161 ccttttccta aaataatggg cgcaatcgtt atcacaaacc gatctatcgc cttctctttt
    20221 aaaaattgtt gcactaattt tgcgccacct acaagccaga ttttttcacc atcaatgtta
    20281 ttcagccatg tatcaacagt cccagctaca aagtcggcat actcatcttt tgtcccagct
    20341 ttcgtgttgg aaaaaacgta gacatctttt ttactgtaag ggaatgtgtc agtaagcgag
    20401 aaaatttgtt gatacgtcgt ccggcccatt acaactgtat ctacgttgtc aaagaaagct
    20461 tcataacccg catccccttc actatcaata gattctaacc attcgacact tccgttttca
    20521 tctgcaatat aaccgtccaa actaaccgcg atatatagcg caacttgttt ttcactcatt
    20581 attactcaaa tcctttcact actaattttc caatcatttt tccggatgag ataattttgt
    20641 gagcttcttc tattgtcgcc gcgttcacgg gtgataaaac ttgatttaat gtcgttgtta
    20701 attcgcccgc atctagcata tgagctgctt ctgttaaaat ttcatgctgt ctgattttat
    20761 ctgttgtatc atatttcgaa cgagtaaaca tgaattcata gctgaaagta gcactcttgt
    20821 cttttaaaag agtcattttc actggctctg caagttctac aatagagcaa attttccctt
    20881 gtgggcgaat cgcttcttgc atctcatccc agtgagcact cgtgttatgc aaacataaaa
    20941 taaaatcaac tccctgctca aatccaagtt cttccagttg ttctgggatg ttttctcggt
    21001 ggttgataac atagttcgcg ccgtggctct tagtccattc tactgtttct gggcgtgagg
    21061 ccgtggcgat gacttcaaga ccagcatgtg cagctagttg ggtcgcaata gaaccaacac
    21121 caccagcgcc attaataatt aaaattgatt tacctttatc attttcagta atagttaaac
    21181 gatcaaacaa tgcttcccaa gctgtaatag ttgtcagtgg catcgcagca gcttcctcta
    21241 cgttcaagtt atgtggtttc aaaccaacta accgctcatc aattaaagtg tattctgcgt
    21301 acgctccttg ccttgtgacg tcacctgcga aataaacgtc ttgcccggtt tgaaataatg
    21361 caacttcact cccagtatct actacttctc caaccgcatc ccaacctaaa atccgtactt
    21421 catctccaga tagcttcgtt gcttcacgtt gtttagtatc taccggattg atggaaatcg
    21481 ctttaattct aactagtaaa tcatggtttt ctggtactgg cttgtcgatt tctatatcca
    21541 caaaatccgt tgacgctctc gttaatccta cagctttcat ttgacaacac ctctcgtttc
    21601 cttttcccga atttcttaaa ataatgcaca tttagataaa aaagccttct caaactcact
    21661 gagaaggctt taaaacttat ttttcgtcga gcaattcgct atctttgaat ttcatttttg
    21721 catggcaggc cgggcatttg attttcaact tgccaccgtg tgaatgagta tggtcgctag
    21781 cttctttttt ggaaagaagc attttgctag ctttttttag tagcggtata gcgataatta
    21841 caccgatgat tgtgaacatt gctagaaccc cgataaatac taaggttacg gcaactacag
    21901 cgataaaagt ttttttcaaa aaatgtccta aatcaacttg ttcttccatc taaaccaact
    21961 cctctaattg atactttaat catatcatga agcggcatta attgcagtga tgatggtgag
    22021 cgtgatttcc ttcaagttga atcgtactat gttctaaaga gaagttttct tgcaaataat
    22081 gctcaatatc tgccaaaatc ttatctcggt cggcatcttc gcatacggtc aaatgagctg
    22141 taagagcatt gaaatccgaa gtaatcgccc atacatgtaa atcatgcact tctttgacac
    22201 cgtcttgctg ttggaaaaac gttttgattt cttctgtatc gacattcgct ggttttcctt
    22261 ccatcaaaat atgaatcgca tctttcagta cacgccaacc actaactaag ataagtgccg
    22321 caacaataac actcgcaatc gggtcagcga tattccagcc aaggaaaata atgagtaacg
    22381 cggcaataat cgcaccaaca gagccaagca aatctccaag cacatgcaag aacgcactac
    22441 gcatattcaa attttcgcta gtgtcacctt tcattaaaat ccaagcgacc aaaatattaa
    22501 taagcaatcc gataacagaa atagtcatca ttccagctcc aattacttgt ggcggatcaa
    22561 agaagcgacc aatcgcttca tagaatataa aaacagaaat cccaacgagc gttaatccat
    22621 taagaaatgc agctaaaatt tcaaatcttt tatagccata tgttttatcg gagcttgctg
    22681 ctttttcgcc aaatttaaat gcagctaaac ttaaacctag cgccacggcg tcagagagca
    22741 tgtgccccgc atcagaaagt agcgccaaac tattggtcat aattccacca ataacttcga
    22801 ctaccataaa tgtagcaatt agaataaaac tgataaataa tgattttttg ttggcattat
    22861 gcgcatgatt atgattgtgt ccatgagcat gatcgtggtt atgtgccata tgattacttc
    22921 ccctctgtaa gtagctaatt tccttatatg catatgttag catatataca ttttaagtgc
    22981 aaccattctt ataaaaaaac ttccattttg agattcatat aaaatgaaac taacggaagt
    23041 aattctacga gtacaagagt catgtatcca gcaaatataa aaaagtccac caaaatgaaa
    23101 ttagcaggta aatctactaa agaaattata cgagcgttaa acatcaaaaa actaacacaa
    23161 caaaaattag gctaccaatc tcccattaat ttcaggaaac aagcagccta atttaagtga
    23221 tttttattcc attctcattt ttttatgtca gtacattagt gaaatattat ctaatagttc
    23281 tttttcttat aaaatttctt cttgcataaa taaccctagc ccgccgatat catgatgctt
    23341 tgcgatttta tctgcttttt ctaaagctag cggaatgcca ttctccattg ctacaccaat
    23401 ttcggctaat tcaatcatac cgacatcatt ttcattatcc ccaaaagcaa ttgttgaatc
    23461 aagattaatg taaccatttt ccgcaagata agtgagacct tttgccttat caattccttc
    23521 attcataata tcaattaaat tcgaggcaga cgcgagaaca gaaagtggca agccttctaa
    23581 agctgctttg atttctgctc gtttttctaa atctgattca attacgagta cttttagtgg
    23641 gaattcacct tctcgaagca cgctgaatgg atccgtagtt aaagtaattg gaacttgttc
    23701 attttccggt aaagttttat ttaattcatt gaaaaaggcg attttgcctg tattggttgg
    23761 tccgagaatt cgctccgttg tataaatatg ataattaacg tccagcggtt caagcgtttc
    23821 taataccgta tgtatcaaat ccagttcaat attactttta tataaaatct ctccagtagt
    23881 aaaatcgcgt actaatccgc cattacaaga aatgactggc gttttgatat tgagctcgtg
    23941 gataaatggt aaaattgcta aatccagtcg ccccgttgca aggaaaagtt tttttccgtt
    24001 tttttgccat tccattaaaa cttctttgtt gaggggatga atttgatcac ctttttttac
    24061 tagtaatgtt ccgtccatat ctgtaataac tgtatcaatc gctacatttg ccaatagttt
    24121 tcgcaccctt ctaaatttcc gttattatgt acctcgatta tagacgagtt tcgcatgatt
    24181 gtcacgccga tatttggtat actaaatggg aatggaggac gataattagt gaagaaatat
    24241 tttataacaa tcatgatttt actttttggc gcgttatttc tcagtgcttg tcaaaaagat
    24301 gacgaggttg aaaattcttc tcctcctaaa gtagacttaa aaaacgaaat acccattatt
    24361 ttaattcatg ggagcggtgg cgatacacat tctttagatg aaatggcaga tcacttaatg
    24421 aatgaataca aaagttctaa tgaagcaatg tcaatgtcaa ttaactcaaa aggaaaaatc
    24481 acataccaag gcaagctaac aaaagatgcc aaacgtccca ttatcaaatt tggcttcgac
    24541 caaaaccaag caactccaga tgattggtct aaatggttaa aaatcgcaat ggaagatttg
    24601 aagtcacgtt acggtttcac acaaatggac ggagttggtc attctaacgg cggcttggct
    24661 ttaacttatt ttgcagaaga ctactctaat gacaacgcgg tccctactct gcgcaaatta
    24721 gttgctattg gctctccttt taatgatttg gacccagacg ataatggcga agatttagct
    24781 tttaataaat taccatccaa cacccctcaa ctagattatt ttattgacaa ggaaactaaa
    24841 attagtactg acctagaagt actatccatt gctggagctc ttagtgaaga taatttaacc
    24901 gatggtattg tcccaacgaa tagttcactc gcttccagac ttttcatgcc taataacgca
    24961 aaagtctata tggaagattt acaagttggt gaaagtgcta ttcaccaaac attgcatgaa
    25021 acatctgaaa gtatcgaaaa aacacattgg ttcttagaga aatcgagccc cgaaaaaaaa
    25081 gaaattaaat taatttctaa ataggaggaa taatatgcta catatacaag caaaagtcca
    25141 agttaaacct gatttagtag cggaattctt ggtggaagtg aatttagtaa tccaaggctc
    25201 gctttcagaa accggaaatc atggctacga attggttcac tctgtagaaa acgcaaatat
    25261 tttctatatt ctagaaaagt ggactgatga agcagcaatt cagtttcata acgggacaga
    25321 gcattataaa cgtttcaaaa aaaatgtccc cgctttttta gcaatgccga ttgaggtgga
    25381 tttgcttgcg ccagttgagc gacgatagta tttttttaac aagaaatctt tttgcaacta
    25441 acatcatttt catcttagta aagataaact tacctgtatt agtttagcct tcttttgtgc
    25501 ggattacttg ttcatacact atctcctcta cttcaagtga ttctattgtt tgctcgccgt
    25561 ccacattaaa tgggttccca ctttagaaaa taagcaaaaa ggattggctc gcatacgcga
    25621 gccaatcctt ttttaatcct tcaaatagcc atcttcaatc cgaattacgc ggtcaactaa
    25681 gtctaaaact cgttcatcat gcgtaaccat gatggcagct ttattttttc gttttacttc
    25741 atccgcaatc atttggacta ctttgtgacc acggttcgca tctaagcttg cggttggttc
    25801 gtccgctaaa ataatatcgg ggtcgttcat cagtgctcta gcaatagcga cacgttgttt
    25861 ttcaccaccc gataaacttt ccgggtaatt gttttcgcga gcagttaaac ctaattcttt
    25921 aagtaattca tctgcttttt ctttcgcacc ccgccctttt tcaccagata gttccgcaat
    25981 tacgagtaac tgatcacgga catttaagta cgggattagg ttcgcacctt ggaaaatgaa
    26041 tcctacttta tcgagccgca cttttgttaa ttctttgctt gtaaggtcat ttaacacttt
    26101 tccacctata gcaatttctc cttctgttgg ggataataag gcgcctgcga tagataaaaa
    26161 tgtacttttc ccggcgcctg aaggtccaac gattgcaacg aattctcctt gcgccacttc
    26221 taaagataca tttttcaata cttcgatgac ttgctcgcca tcctgataat ttttagaaat
    26281 atttttcatc attaaagtca ttagtttgcc ctcccaattg cttctaacgc gtctactttt
    26341 gctacacgat agagtgataa catcgatcca atgactgcta caacaaggaa taaggcagaa
    26401 cagccgattg caagtaccgg gctaagtgta aatggcatgc tcgccggtaa aattgctgca
    26461 agaccgaatg ttaagccatt accaattaac aaactgacaa ctgataggaa aacaacttgg
    26521 gtaacgatac ttcggcctaa ataggctgtt cgtgcgccaa ctgcttttaa aatcccaaat
    26581 tggttgattt tttgaatcgt aatgacgtaa aagaaagcag ctagaacaaa tgcggcgatg
    26641 acgaacaaaa aggcaatcat catcagtagc gatccttgtt cttctgagta gccagggata
    26701 ccttgaagca cttctttact agacgaaagt tccatggagc cgagtgatag gtttttagct
    26761 gtgctttcag aaacatctag cgctacggcg ttatattctc cttctgctgc ttggttcgtt
    26821 tgatgcacta atttccaagc atcccagccg acgaatataa ccggtgaatg gctaaatgtg
    26881 ttatttttgg tgaaggcggt aatcgtgaac tcttctcctg ttgcgctatc tttgagtttg
    26941 ctgcctaatt tataaccaga ctcttttaaa gaaatatcgg ctactacttc ttttgttttc
    27001 tctggctctg ttccttctgt gatggccggt ttcatgaagc ctgttttatc tataccgaaa
    27061 taagtaatgt ctgttttttt atctttgttg ggtggtgtga tcgtgcccat ttgcacgcct
    27121 aggttggtgc tttctgattt tttcacttgc ttcgctacgc tgtctgtttc ggacgcggtt
    27181 aaattggacc tcgttaagcg attatccgag tctttttgta aaacataata agttgcttta
    27241 ttggatgaaa tggctgcccc attgtcgttt gcaagtccat tcgcaagtcc cgttacaaac
    27301 aaaacaagcc atgcgattaa caccataatt aatccaatta gaatatagcg taattttgcg
    27361 tgttttaatt ctcttaatgc caaaaacatt ccgttcaact ccttctaaga tcttatcctt
    27421 agtttaaaga agttttgtaa acggaatgtg aatcggattt tacaaattta gttttttggt
    27481 agtttgactt tgaatgtcgt gcctttttcg gggctacttt gcacggttat ttcgccgtga
    27541 tggagcgtga taattttctg gcaaatggat aatccgaggc cactcgagcc ttcttctcgg
    27601 gttcggcttt cgttagcttt ataaaaacgg tcaaaaatct tggccatatc ctccttacct
    27661 atgccgacac cgctatcttg aacttctaca aaaacatacg tcgctttttc ataaaggtgg
    27721 actttgatat tcccgccctg tggtgtgaac ttaatcgcat tagttaacaa attggaccac
    27781 acttgataaa gtaattcagc atcacccgta tagtttacat ctgctaagtc taaatttatt
    27841 gttagttctt tttcgcgcca actccactcg gtcatttgga ttaattgacg ccactgctcg
    27901 tctaagtgaa ctggctcttt ttttcgcaac tctgattctt ggtcaagtga agcgagtgtg
    27961 agtagttgtt tggttaagga agatagacgt gttgtctcct ctgataacac ggttaaatat
    28021 tcggcttgtt ctttttcggt tagtgttaca gaacctaaaa gtctcgcaaa gccttgcatg
    28081 gatgtgagcg gagattgtag ttcatgagaa acattggcga caaattcttg acgggaagct
    28141 tcagattttt tgagttcact agccattttc gtaaacgagt ctgccaactg cccaatttca
    28201 tccttacgcc gaacttcaaa ggctacatca taattgcctt tacgtatttt tttcgtcgca
    28261 ttcgtcaact tcacgacagg tttgacaata tatctgccac taataagaac caacagaata
    28321 ctgatgatgg atgtgaaaat aagtatcatc gcgaaaaata ttcgaagttc cccaaattgt
    28381 ttttccgggt cttggcgtat gaatagcgct agttgtttac catcagcttg gaccgggaca
    28441 ccaatggtat ttcgcacatc attatcaaaa aagcctgtga tgaaaatgcc tgtatcaaac
    28501 gaatcaattc catgatatgt ctctccgtcc aatacttgct tgattgtctt atccggtaaa
    28561 tcttttttcc gaaaagcgtc accataataa gtggattttt ccgcgccatc tgtcaaatat
    28621 aattcgtatc ccagttcgcc cacattttcc aagtactcgt ttaaagaaat cgtagcattt
    28681 gactcataaa attgttggac ttcctccgct attttggcag ttttttcgtc gttaaaaggt
    28741 tttaatttta tttggtaata aatgtttgca aagaaaaagc cgagcaaact actggaaata
    28801 atgacgacaa gcatcgtgac aactattcga ctatataacg atttcatgtt gtctcctcca
    28861 atttataacc aacgccgcgc accgtaacaa ttcgaatacc atccttttct tcatcaaaat
    28921 ggtcccgcaa tcgtttaata tgtacatcca ctgtacggtc actaccatca taatcacgtt
    28981 gccaaatccg ctcaattaat tcttctcgag taaaaatccg gccaggatag cttgctagct
    29041 gatataaaag ctcaaattct ttcacgggaa tcattcgttc ttggttgcca atttttatac
    29101 catagctttt ttgatcgata gtaatatttc cgatattaat tttgacttcg ctcgcttgat
    29161 tagaacgccg tagcaacgca cgaattcgaa agattagctc ttctggttca aagggttttg
    29221 tgacataatc atctgttccc acttcaaaac cgcgtgattt atccgccagc gcatctttgg
    29281 ctgtcaacat aataacaggg atatcaggat aacttgtgcg catttttttg caaagttcaa
    29341 aaccatccat gttgggcatc atcacatcaa ttacagctaa atgaacttgc tctgtttcaa
    29401 ctattttttc tgcttctacc ccatcgcttg cctcaagtac acggaagcct tctgcacgca
    29461 aatagtggcc cacaagttta agtatatgcc gatcatcatc tactactaat atttgtttca
    29521 ttttcaccgc tcaccttact gtcctatttt actgcatcat atcaaactta cgtgattcgt
    29581 tcaaatccag aatagacatt taacctatca ccacgaataa agccaacggt tgtaatattt
    29641 aattcttcgg ccatattaat cgccagttcg gttggggcag aacgagacaa aataattcca
    29701 caacctagtt ttgctgtttt aacgaggatt tccgaagaaa tgcgcccact aaaaataatt
    29761 gccttatctt cagtggatgt tccgtcttgc aaggcacggc catatatttt atctaaggca
    29821 ttatggcgac ctatgtccat cctgctgtat ataatttccg ctgaactaca tagagccgca
    29881 ttatgtacac ccccagtttg atggaatgta gcagaatttt gttcaaaatt ttccattaag
    29941 cggaaaatca tgtcggttgt tagttgtaga cttccatttt gcttcacatt gacgagtgag
    30001 gcgtctgatt ggaagtagaa gttttcccga gacttgccgc aacacgaggt aatgtagcgc
    30061 ttgccgcgat acttggcatt gaatttgttc acaaaattag cgctaacctt ggcgtgtcca
    30121 gtcgcttcga tgatatccac ggaatcgatg tcttgaggac cccgaacgat gccttccgat
    30181 gtcagaaagc ccacaactaa atcttccaga tattctggcg tgcagacgat ggtcacgagt
    30241 tcttggtcgt taacgtagat agttagcgga tactcggtcg caacacttga ttcaatttct
    30301 tgaaaagtgc ccgcttcaaa acgacggatt ttttggtgcg aaacaatatc catcaaaaac
    30361 cactcctctc taaactgaaa cagcgacaca tcttagtctc gctgtttcgt ctacttattt
    30421 taatgtttgc ccaacttctt ttaaaaaggt cacaccatac cggagtgcgc ggttgatatc
    30481 ggggtctttc agcgccttca tcatcgctaa catgcccatg atttcgtctt ttttcgcgct
    30541 ttcttctgct tttttcgcag catttttcaa attggctatc atttcctcag tttgctctgg
    30601 ttttgtatcg gtcaatagct tacttgaaat catcatgtta ttaatcgcat tcgtcatcgg
    30661 ttccttacgc cattcattca gaaacgtttt cgtaatatcc ccgcgcgctt taatcgcact
    30721 attcaaagct tcaagtgccc ccgattcctg tagtaacttt accgtttcta ctatctctac
    30781 aaaaccagaa tcttgttcag caatatccgc tttcatttgt tctaaacgtt catgttccaa
    30841 ttcttccggg gtcttttttg tatcacgaat cgttgaaatt ggttctgcca tcagtgattc
    30901 ctccttttcc caccacaccc gcagttacca ccacaagcgc agttcacttt agaaatcggt
    30961 tgataatctt ctctcgacca tttgcgcgct acctcagccc cattttgcgg gaatctttta
    31021 cgattacgtg gattgtggtc tggaagtggg tttttccctg ttttttcaag tacagtgagg
    31081 ttcacttttg tttgtttata ggccggtgtt ttcgtccgaa catctcccgc gcttgaagtc
    31141 agtaagttga ccgcggtttc gctactcaca gaatgcattg gcacatagac ctcattccct
    31201 ttcatccgct cagtcacaac ggcacgaagc ttgatgcggc cataaggcga acttagacga
    31261 acgagcgaac cactttctaa atcgcgttct ttggctaatt catgtgatac ctctacaaac
    31321 acttcaggta atttataatc caaccctttc gacttatctg tcaaattccc ctcatggaac
    31381 tgctccaata aacgcccatt attcagcgtt aaattatatt cttctgggaa agtaatcggt
    31441 gcaatatacg gtaacgtcga aaattgcgct ttgccgtccg gaaaattaaa tcgttcttca
    31501 taaagtaacg gcatatcctt cccatccgcg ctcactggcc atacaaggct gttaaatcct
    31561 tgcatccggt cataacgaac ccctgcaaaa aatggtgcta aactagcaat ttcgtccata
    31621 atctcgctcg gatgatcata attccagtcc gttctgccac acgctttcgc aacttcttga
    31681 ataatccacc agtctggctt cgaatctcca agcggctcta acacctcata aagtcgttga
    31741 acacggcgct ctgtattggt aaatgttcct tctttttcaa gagaaggagc tgctgggaaa
    31801 acaacatctg caaattgtgc tgtttttgat aagaacacat cttgaacaac aaagaaatca
    31861 aggctcgcaa ggatttcttg cacatgattt gagttagagt ccacccaggc catttcctca
    31921 ccaataacat acatagaatg aagtgttccc gcctcaatag catcaagcat ttcattgttt
    31981 ttcagccctg gttctggtga aattgatacc ccataagctt cttcaaaacg agcacgaacc
    32041 tcatcatttc caagcggttg aattccagga agaacgttag gtagtgaccc catatcgcaa
    32101 gcaccttgca cattattatg ccctctaagc ggataagcgc ccgcaccgtg tcttccgaag
    32161 ttcccagtta caagaagtag gttagcgata gcagacgatg tatgtgatcc agcaatattt
    32221 tgcgtaactc ccattcccca acaaaccgct gtcccgtctg cttcataaac catctgcgcc
    32281 acttttttca atatttctac tgatagtcct gtttcttttt ccgcatattc caatgtaaat
    32341 ggttctaaaa atgatagata atctgctaca ttgctaatcc tattttccat aaagacttca
    32401 tcatgccatc cttgatcaat catatatttc gcaaccgctg ttaaccaaac aaaatcggtt
    32461 ccttgttttg gatgcatgaa taaatcagaa cgctctgcca tttcgtgttt tcgtaaatca
    32521 gaaacaatca gcttttgacc gcgtgtcttc tgagctcgct tgattctgct agcaaggact
    32581 ggatgaccat cggctggtga tgcgccaaca ataatgacaa gtccggccgt ttcaatatct
    32641 tccactgtcc ctgaatctgc accaatccca actgtccgag tcagcccatc cgaagcaggc
    32701 gcctgacaat aacgtgaaca attatcaata ttattcgttt caaaaacctg ccgcgccaat
    32761 ttttgcatca aatagttctc ttcattggtt gttttagaag aactaataaa tccaatagaa
    32821 tcatttccat atttagcctg aatttctcgc agtttggtcg caactagatg aatcgcatct
    32881 tcccagctcg ccggcacaaa ttcattaccc tcgcgaatga gcggcgtcgt aatccgtttc
    32941 tcactattga caaaatccca accaaatttc cctttcacac acgtagcaaa tttgttcaca
    33001 ggaccttctc cggttggctc gactttcaaa attttgcgat ccttcgtcca cacctcaaac
    33061 gtacaaccaa ccccgcagaa agtacaaact gtcttcgttt tcttcgtccg cgtttcccgc
    33121 atcgctgctt ccatttccga cacagcaaag acggtttgat aattcggctc gacttttttc
    33181 accatatcaa tcatcggttc tagcatatct tcgtctaagc cagtcataaa gccagcttgg
    33241 ccaagcattg atttttccat caacgcgtta caaggacaca ccgtcgcaca cagcccacaa
    33301 gaaacacagg acgataaatt cgctggacga tcatcatccc aaataaccct tggctgacta
    33361 cgttcccaat caatcgaaag tgtttcattc acttgtactt gctgacacgc ctccacacag
    33421 cgcccacaaa gaatacattg atccggatca taacgataaa acggatgcga aaaatcattc
    33481 aaatagccct tttcgcggta aggacgttct tgtttttcca caccaagcag ttccgtcgta
    33541 ttatgtactt tgcaattacc gttattgtta tcacaaaccg tacaatacag taaatgattt
    33601 tccaaaatcc tgtccatcgc ttctaattgc gcatctttcg ctaattcaga attagtttta
    33661 atttccatcc cgtctgtcag attcgtgctg cacgcccgca taagttcccc atcaacctcg
    33721 cacatacacg tatcacaaga ttgaattggt ccaatttgct cactataaca aatatgcgga
    33781 tgctgtattc cttctgcatt taaatagtcc agtattcgcg ttccttccac cacatcccgc
    33841 gccacgccat taatttgcac cgatactttt gcgcccatca cattacctcc tatatagaga
    33901 aagcgtttac aatttccgct tatattataa cagttcttac ttaaaaatca cagtaatacg
    33961 gcaattgata atcgttctca aacactgcta ctatgcgatt tctctcacaa ggctaacgaa
    34021 tttattgaca cttatccaac ttttctgtat tctttattac aaagctacga cgagaaaagt
    34081 acgacgcccg ttttttcgaa aagagagttc ccactgctga aaaggaacaa aaaacaacgt
    34141 ccgaaaatgg cctctgagtt ttgtcgctga aaataagtaa gcaacaacgg gtttggtgtc
    34201 cgttatcaag caccctaagt attttatgta aatgcttatt tgaggttttc agtgcaagct
    34261 ggaaataaat taaggtggta ccgcgtgaaa ttttctcgcc cttattccaa gatatttttt
    34321 tggataaggg cgagttttat tttaccctaa attgctcgaa atggaggatt tcaaaatgac
    34381 aaaacaacta cttgttttac aatctgattt tggtattagt gatggtgcag ttagcgccat
    34441 gtacggcgtg attaatagcg ttagcaaaga tttacaaata tacgatttaa cgcatcaaat
    34501 tcctcaattt aatatttggg aagcatcgta tcgtttactt caaacggtta cttattggcc
    34561 cgaagatacc atttttgttt cgattgttga tcctggagtt ggttcgaagc gccgaagtgt
    34621 cgtcgtttta acagaagatg gtcattatat tattacacca gacaacggaa ccttaaccca
    34681 tatcgcgcat tacggaacga ttaaagaagt tcgactgata gatgaagaaa aaaatcgcct
    34741 accaaaatca ggtgcatccc atacatttca cggtcgagat attttcgctt ataccgcggc
    34801 taggctcgca gccggcgtga ttaattttga agatatcggt ccatcagcta ccccagactc
    34861 cattgtttct ctaagtctaa gtgactccta cttagaaggc gagcaagctt ttggcacaat
    34921 tgatattatt gaccgtccat tcggtaatct ttggacaaat attcgccgaa ctgatttctt
    34981 gcagctaggt gctaactatg gcgattccat cgaagtcctc atcaaacacc acgaccgagt
    35041 agtttataag aatttcgtta cttatagccg ctcatttgcc gacttacgga ttggcgaagc
    35101 gctcatctac gtcaattcac tcgacaacct cggactaggt atcaatcaag ggtccttcgt
    35161 agacgcttat tcagtcggca ccggcaccag ctggaaagtc acccttaaaa aagtataaaa
    35221 aacagggtca aacatccaaa ttggaagttt gaccctgttt cattttttta tttcgtatat
    35281 tctttgacga ttggctcttg ttttttggtt ttcaggaata aacttaagat catcccaata
    35341 gccgcaaaaa tcgctgcaac cataaacgcc gcacgcattc cgtccaagct agcatcttgc
    35401 gctttttgag caaaactagc cggatccgtt gccataagcg ctttacctgg catattatct
    35461 ttcgttacat tcgttagcac tgtaataagt accgccgtcc caatcgaacc agcaatttgt
    35521 cgaatcgtat tatttaccgc cgaaccgtgg ttaatcaaat ggttaggaag tgcattcata
    35581 cccgctgtcg aaactggcat catcgccatt gaaatcccga agaacctcac agcataaaat
    35641 acaacaatat accaaagcgg cgtatccatc gttaagaaca taaatggaat tgtaccgata
    35701 gtcaaaatgg taaccccggt aatcgtcaac catttcgccc caattttatc gaaaataata
    35761 cccgtaattg gactcattat ccccataata atcgcacccg gaagtaataa cagacctgat
    35821 tgaagcgccg actccccgcg aattgtttga atatataaag gcaatacaat ttccgcacca
    35881 atcattgcca tcgttacaat cgaaccaaga ataacagaca atgaaaatac tggatattta
    35941 aacacatgta gttcaagcat tggattatca ataactagtt ggcgccaaac aaataatgca
    36001 ataacaacga caccaacaat caacatcgtg ataaccgttg catctcccca accatcatta
    36061 cctgctgaac taaatccata aaggagtgaa ccaaaaccaa ttgaagacat tacaatggaa
    36121 agaaaatcga tttttgtatc agttaatttt actacttttt tcattccaaa gaacgctaga
    36181 attatatcga taaccgcgat tggaattaaa ataaggaata atacgcgcca atcatatgaa
    36241 tccacaatcc aaccagacaa agttggccca attgctggag caaacgcaat aacaagtccc
    36301 atcagcccca tcgctgcccc acgtttttca cgagggaaaa tcagcaagaa gattgtttga
    36361 agcaacggca tcataatccc cgcaccagct gcttgaacga tacgaccagt aagtagtacc
    36421 gggaaagaac ccgccactga cgcaataatg gtaccaattg taaatacagt catcgctgta
    36481 ataaataaag tttttgaact aattttttca attaaaagtg ccgtaatcgg aatcataatc
    36541 ccatttgtta gcaagaaagc cgtcgtcaac cattgccctg ttgctgctgt aatatgcaaa
    36601 tcatccataa tcatcggcag tgccgtcgct agtaacgtct gattcaagat cgccacaaac
    36661 gccccaataa tcattgtaac tactaataaa cttctactat aagatttccc gttaacatca
    36721 acgggccgtt ctactgctgt actattcaaa attaataccc cttcccatgt ggaaatttcc
    36781 agatgaataa tagaagtata ataaaaaaag accaacaagt caacaaaaag tgactggtca
    36841 gtctaattat tataaaagcc cgttcacaca agcttctaat ttatttacct ctttggtcaa
    36901 acttgctggt acatgttgtt taagatacaa caatgttcct tgaaccatga aatctctagg
    36961 cgcctcatta ttgttaatct ccccaacaag cgcgttcatg gattccttat actgccattt
    37021 atccgagtca tcaatatccg cattttcaat cccgacattt aactcctcca gcgcgccccg
    37081 cagtttagct agtcttttct ttctaatcat agtttgatcc ggcaccagat tttctgtgtc
    37141 cgcttccgta aacacaatct ctccgctctc caaaatatcc ttcacaagtg catcaagcct
    37201 tctcaccaca taaggaatag cccgctcaat caatcctgaa tcaacattct tgctaccact
    37261 agcaaagaca tacattgccg ccatcccgct aagcaacatc gtaatatcat ttatataagg
    37321 ctccgtttcc ttcccataaa cctctaacaa ctgattttta acccattcca tattcttaag
    37381 tcgcacattc tgcaagaacg cattaaaatc atcatcaatc atcgtctgag aaaacgtaat
    37441 attcaagatc tccccatttt ccgtataaaa atgaataata attttcaagc actccgtaaa
    37501 attatccttc ttcgtcccat ctagccccat cgtatactcc aaacgctgat gcaatacaga
    37561 atactcctgc ttaaaaatca caattgccag ttcctctttc gaagtaaaat aattataaaa
    37621 agtcccttta gaaatcccag ctgcatcaac catatcttgt acagacgtct tcaaataccc
    37681 ttgtttttga aacacctctt tagccgactt aataatccgc tgcttcttct ccttcaaaaa
    37741 aacaccccac ccgttctgtt attataccca tagtataatc gatttatact acctattcaa
    37801 gatatccata ataaatatca ttattctttt aaacaataaa aaaagcctcg catactagcg
    37861 aaacatacaa attatccata tattatttaa gccacttgtc ggatttgaac cgacgacccc
    37921 ttccttacca tggaagtgct ctaccaactg agctaaagcg gcagcaaagc ctttcaaata
    37981 a
//
LOCUS       DABQVC010000002        36983 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.002,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000002 DABQVC010000000
VERSION     DABQVC010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 36983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36983
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.002"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(17..1528)
                     /locus_tag="IBJ56_000038"
     CDS             complement(17..1528)
                     /locus_tag="IBJ56_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HAM3416326.1"
                     /translation="MNQSETKALEALQNGSDIRGIAIATEKYQITLTDERVEKIAYGF
                     AKWLKEEKKVEGQAKVAIGHDSRLSAERLKAALVKGLTFAGINVVDVGLATTPAMFMA
                     TQYEDYNCDAGIMITASHLPFMYNGLKLFTKSGGAEHEDIDYIVAHADKSFIENGLNL
                     GKVTKQDLLSTYAADLTDKIRAGITDAADKMKPLLGSHIIVDAGNGAGGFFAEKVLAE
                     LGSDISGSQFLDPDGNFPNHIPNPDNEEAMASLKKAVLASGADLGVIFDTDVDRAAIM
                     DKNGESLNRNPLIAVISSIILEEKPGTTIVTDSTTSGHLQTFIEAKGGKQHRFKRGYR
                     NVINEALRLNADGTPSEIAIEVSGHAALKENYFLDDGAYLIAKILMTYATLRKNGKDL
                     PDLIADLREPAESEEIRLSITATDFKAYGKEVLADFLTFVEADPDMELEPVNQEGIRV
                     NTKGAIGEGWFLLRMSLHEPVMPMNLESDEAGGIRKVKNRLAGFFASKAELKM"
     gene            complement(1597..2472)
                     /locus_tag="IBJ56_000039"
     CDS             complement(1597..2472)
                     /locus_tag="IBJ56_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAM3416327.1"
                     /translation="MLSKMEINKRALKENMALLACPICGEAFEFKEPQSFVCLEGHGF
                     DIAKPGYVHLLKQAHKTKYDQALFESRKKVIASGFFEKLIERVTEIIAEKKKEQLVLY
                     DAGCGEGSHLARVVSNLQATGVNVQAVGLDIAKEGVKQAARDYPGTSWTVADLANCPN
                     QAETADVILNILSPSNYVEFKRLLKKDGFLLKVVPEANYLRELREFIYVDEKSSYSNE
                     SVTSRLAEKLSVEHVERVTYKAPIAKELFADFLEMTPLGWHIEADKKSELLGNPPEEL
                     TVDLQIIIANRAHLL"
     gene            complement(2525..3007)
                     /locus_tag="IBJ56_000040"
     CDS             complement(2525..3007)
                     /locus_tag="IBJ56_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HAM3416328.1"
                     /translation="MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGR
                     KTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGETIYIVGGAEIYR
                     LFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
                     "
     gene            complement(3023..3967)
                     /locus_tag="IBJ56_000041"
     CDS             complement(3023..3967)
                     /locus_tag="IBJ56_000041"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HAM3416329.1"
                     /translation="MKQYLDLEKYVLENGTQKGDRTGTGTISTFGYQMRFDLQEGFPI
                     MTTKRVPFKLVVSELLWFLHGDTNIRYLLQHNNNIWNEWAFERFVKSDDYKGEDMTDF
                     GLRAERDSAFKEVYQAEMEKFKARILEDEAFANKYGELGNIYGKQWREWKTSQGETID
                     QLADLIEMIKTNPNSRRLIVSAWNPEDIPNMALPPCHSLFQFYVADGKLSCQLYQRSA
                     DIFLGVPFNIASYALLTHLIAREVGLEVGEFIHTMGDAHLYNNHIEQVKEQLSRTPHK
                     LPKLVLSDKPATIFDFDVADISLDGYNPDPAIKAPISV"
     gene            complement(3980..5872)
                     /locus_tag="IBJ56_000042"
     CDS             complement(3980..5872)
                     /locus_tag="IBJ56_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HAM3416330.1"
                     /translation="MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKST
                     LLQIISGSESGDKGTVTKAKDYTIGYLAQDPEFNEEDTVLSAVFDGDTAALRAMRKYE
                     EVLLAMSLDAENTKLHDAYTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISELS
                     GGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFL
                     DRVTNHMVELDRGSAYRYVGNYEKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGP
                     QGRATKQNARQDRFHDLEKKVKTKTDDSELAIDFVTSRLGKDVFELKNLEKRFDEKQV
                     LQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNE
                     EMDPDMRMIAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRL
                     FLLRILMERPNVLLLDEPTNDLDTQTLTVLEDYLESFNGTVITVSHDRYFLDKVVNKL
                     LVFRAIGEVEIFYGEYSDYLKELEAKAKPAKSMKKMANTSVEKAAPEKKEKVKLTYQE
                     QLEWDGIEDAISELEQTIESLNETLEQTGADFTKAAEISELITAKETELEQMMERWEF
                     LSQYAE"
     gene            complement(5992..7674)
                     /locus_tag="IBJ56_000043"
     CDS             complement(5992..7674)
                     /locus_tag="IBJ56_000043"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009928213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HAM3416331.1"
                     /translation="MSNKVKSDIEIASKAEILPVTTIAEHLGLDADALELYGKYKAKL
                     SYDTIHSLKDKEPGKLVLVTAINPTPAGEGKSTVTVGLGDALSKKDKKTVIALREPSL
                     GPTMGIKGGATGGGYAQVIPMEDINLHFTGDFHAITAANNALSAFIDNHMQQGNDLDI
                     DGRRIVWKRVVDLNDRALRKVVVGLGGPIQGVPREDGFDITVASEIMAIICLASDLKD
                     LKKRLSEIVIGYNYKKEPITVGEMGYEGALTLLLKDALKPNLVQTLEHTPAIVHGGPF
                     ANIAHGCNSVSATSTALRLGEYVVTEAGFGADLGAEKFLDIKVPALGKAPDCVVIVAT
                     IRALKMHGGALKTELSEENVDALAKGFTNLQKHTKSIQTFGIPYVVAINKFITDSDAE
                     VAKLEALCEEHGIPFSLTEVWEKGGDGGLELADKVIAAVESGEADYKRIYDDAWSIEE
                     KLEAIVTKVYGGIGVELSSKAQKQIVEFKKYGWDRYPICMAKTQYSLSDDPTLLGRPT
                     DFVIHIREFIPKLGAGFVVALTGDVMTMPGLPKKPAALNMDVDENGNAQGLF"
     gene            complement(7832..8260)
                     /gene="mntR"
                     /locus_tag="IBJ56_000044"
     CDS             complement(7832..8260)
                     /gene="mntR"
                     /locus_tag="IBJ56_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HAM3416332.1"
                     /translation="MPTPSMEDYIEKIYSLIETKGYARVSDIADELFVHPSSVTKMVQ
                     KLDKDEYLIYEKYRGLILTPKGTQMGKRLLERHALLESFLSIIGVDPSHIYHDVEGIE
                     HHLSWNSIDRIGDVVQFFENHPDALKTLKAMETTKPETKE"
     gene            8625..8825
                     /locus_tag="IBJ56_000045"
     CDS             8625..8825
                     /locus_tag="IBJ56_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAM3416333.1"
                     /translation="MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEG
                     QAVTFEVVEGNRGAQAANVEKA"
     gene            8949..9350
                     /locus_tag="IBJ56_000046"
     CDS             8949..9350
                     /locus_tag="IBJ56_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI family protein"
                     /protein_id="HAM3416334.1"
                     /translation="MEVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLAVMTNHEAE
                     FIAIKLGLEEAIKKQATLIRLYSDSKVAIEAIHKRHAKNPLFKPHLEAILEMADSFEL
                     FFAEWRNVSQNKQADQLARQAIKKQKQPGVK"
     gene            complement(9369..10241)
                     /locus_tag="IBJ56_000047"
     CDS             complement(9369..10241)
                     /locus_tag="IBJ56_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease"
                     /protein_id="HAM3416335.1"
                     /translation="MTENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQG
                     FMRHMFAAIRQSNPTHTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVA
                     AGFGFVNLGVPGFEADDCIGTITVQASNTIATTVLSGDKDLLQLIAPTNDVWIMQKGY
                     GNYKRYDEATFFEEMGISPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIE
                     GVLNNLDKLKPAQQTKIQEDLAMLELSQKLARIHTEVPLEIDLPSLKYDGFREDAFAV
                     VEKYGLKTLTRDIE"
     gene            complement(10319..10588)
                     /gene="rpsN"
                     /locus_tag="IBJ56_000048"
     CDS             complement(10319..10588)
                     /gene="rpsN"
                     /locus_tag="IBJ56_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HAM3416336.1"
                     /translation="MAKKSKVAKHERQQALVEKYAELRRTLKAEGRYDELRKLPRDSS
                     PSRLHNRCELTGRPHGYMRKFGMSRIRFRELAHQGQLPGVTKASW"
     gene            complement(10711..11769)
                     /locus_tag="IBJ56_000049"
     CDS             complement(10711..11769)
                     /locus_tag="IBJ56_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase"
                     /protein_id="HAM3416337.1"
                     /translation="MNGKQVMVGGLSLLLVGAGLGAFGSQAQAATDDASVMPDISNKQ
                     VLVGYWHSWKSSGNDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGI
                     NDSDFRAQVGALNKEGRAVLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDI
                     DLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSL
                     ANYYDYIAPQLYNQGGDGVWVDETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIP
                     ANKFVFGLPANVDAAATGYVKDPQIVKNVFTRLQAKGTPVKGIMTWSVNWDAGKNKAG
                     VPYNNGFSNAYGPIVGTK"
     gene            complement(11961..13268)
                     /locus_tag="IBJ56_000050"
     CDS             complement(11961..13268)
                     /locus_tag="IBJ56_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HAM3416338.1"
                     /translation="MLGKGKIAALGFQHVLAMYAGAVIVPLLIGGALGFNGEEMTYLV
                     SIDIFMCGIATLLQLTVNRFFGIGLPVVLGCAVQAIAPIILIGQDMGIGAIYGSIIVS
                     GLFVLLIAPFFSKVVRFFPPVVTGSVVTVIGLTLIPVAINNLAGGEGAKDFGSMYNLG
                     LGFGTLLLIILVYRFGQGFSKAIAVLIGLVGGSLFAALYKGISLGPVSEASWFHMPKP
                     FYFGTPTFEWPAIITMILIALVSMVESTGVYFALSDITERKLTQKDLTRGYRAEGLAI
                     MLGGVFNTFPYTAYSQNVGLVQLSGIKTRKVIYAAAGFLIVLGLIPKIGAVTTIIPTP
                     VLGGAMVAMFGMVVAQGIKMLGKVNFTSQENLLIIACAVGVGLGVTVVPDLFNAFPSF
                     VRLFTSNGIVAGSVTAITLNIIFNMIPHRKDKKVADPEPQHAK"
     gene            complement(13275..13853)
                     /locus_tag="IBJ56_000051"
     CDS             complement(13275..13853)
                     /locus_tag="IBJ56_000051"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HAM3416339.1"
                     /translation="MKLLEEFIQEKGTVLPGNVLKVDAFLNHQIDPVLMQAMGNEFAK
                     RFQDLGITKIVTIESSGIAPAVFAGLALSVPVVFARKKKSVTLTDNLFTSTVYSYTKK
                     ESNDISVSKQFLTADDTILVIDDFLANGQAALGLLEIAEHAGAKVAGIGIVIEKSFQQ
                     GRELLNKTGIPVYSLARIASLENEEILFLEEE"
     regulatory      complement(13935..14035)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00167"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="purine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="guanine and/or adenine"
                     /db_xref="RFAM:RF00167"
     gene            complement(14081..15589)
                     /locus_tag="IBJ56_000052"
     CDS             complement(14081..15589)
                     /locus_tag="IBJ56_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HAM3416340.1"
                     /translation="MVETLEEEFLAYIKKMEALEEALALVYWDLRTGAPSKGMEGRSD
                     VIGVLSEEIFNMQTSEEMAAFIAGLNLDKENLSEITLKTLEESQKKYDLNKKIPSKEY
                     AEYTKLVAQAETAWTTAREQNDFAAFEPFLTKILEMKRKFVEYWGYEENKYDTLLDQY
                     EPGVTVSVLDSVFEKVRDGIMAIREKIANEGVKPDATILNTKISEAKQKEFSIRILNK
                     MGFDFEAGRLDETVHPFATGLNTGDVRITTRYNENDFKMAVFGTIHEGGHAIYEQNFD
                     AALVGTPLANGASMGIHESQSLFYEIIIGSSLAFWKSNYADFQAITKPAFDHVTLEDF
                     YRAVNISESSLIRIEADTLTYPLHIMIRYELEKALINGELEVKDLPKAWGDKYEEYLG
                     IRPDNDTNGVLQDIHWAGGDFGYFPSYALGLMYAAQFFNQMQKEIPNIDAIIASDDYS
                     ELKTWLTEHVHKFGKTKKPLEILTDTTGEGLNPTYLLDLLEKRYAYVYQFNK"
     gene            complement(15609..16757)
                     /locus_tag="IBJ56_000053"
     CDS             complement(15609..16757)
                     /locus_tag="IBJ56_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HAM3416341.1"
                     /translation="MKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSA
                     IARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKST
                     LYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGL
                     HKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPG
                     FNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAG
                     LGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS
                     VYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED"
     gene            complement(16919..17300)
                     /gene="rnpB"
                     /locus_tag="IBJ56_000054"
     ncRNA           complement(16919..17300)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="IBJ56_000054"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            complement(17337..17678)
                     /gene="gpsB"
                     /locus_tag="IBJ56_000055"
     CDS             complement(17337..17678)
                     /gene="gpsB"
                     /locus_tag="IBJ56_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HAM3416342.1"
                     /translation="MTSEQFEYHLTGKEILEKEFKTGLRGYSPEDVDEFLDMVIKDYS
                     TFTQEIEALQAENIRLVQELDNAPLRTSTQPAPTFQAAAQPAGTTNFDILKRLSNLEK
                     HVFGNKLDDNE"
     gene            complement(17810..18355)
                     /locus_tag="IBJ56_000056"
     CDS             complement(17810..18355)
                     /locus_tag="IBJ56_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HAM3416343.1"
                     /translation="MKSIAVTGYKNFELGIFKKDADEAVYIKETIKRHLLPLVEDGLE
                     WVIISGQLGIELWAGDVVAELKADYPIKLAILEPFEKQSANWNEANQLWASEVLEKAD
                     YHAFITKRPYESPAQFAARDGFIIDNTDGALLVYDLEKEGSPKFFYDRAIQAKEQSNY
                     YIDCIDFYALQEVVEDMNQTF"
     gene            complement(18352..18717)
                     /locus_tag="IBJ56_000057"
     CDS             complement(18352..18717)
                     /locus_tag="IBJ56_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YppE family protein"
                     /protein_id="HAM3416344.1"
                     /translation="MELLNRTEKLLLQNEKNWELYLSNREEAKPFDFYKDMKPFVDEA
                     KNSADAFLELAIPWVNKERPPYLGELQLRQACDNVQMTAVSAFNGKSFYKHFLDHYQS
                     TKYTLTRVRDFLKRKEELM"
     gene            18964..19569
                     /gene="recU"
                     /locus_tag="IBJ56_000058"
     CDS             18964..19569
                     /gene="recU"
                     /locus_tag="IBJ56_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HAM3416345.1"
                     /translation="MAIGYPNGKKYAASHEVLPQQKRKAPVTYGKRGMSLEDDLNDTI
                     AYYLTHEIAVIHKKPTPVQIVSVDYPKRSSAKIKEAYFKTPSTTDYNGVYKGKYVDFE
                     AKETQNTTSFPLSNFHDHQMTHMANVLKQDGIVFVIIAFQKLGETHFIPFEKFYPFWE
                     RMQSGGRKSVTIAEIQDVSDQIPYGLNPRLDFLQSIDKLYF"
     gene            19601..22084
                     /locus_tag="IBJ56_000059"
     CDS             19601..22084
                     /locus_tag="IBJ56_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HAM3416346.1"
                     /translation="MADKPQTRSQYRNKQSGGSKKKSQKRGKRVVANIFKTIFFVGLF
                     LAFFGIAAGATVFYDYAKDAPKLTDSKLRDPLSSKLLDKDGKVFAEVGTERREYIEYK
                     DIPETLKNAILTTEDARFYEHDGIDPIRLGGAVIANLTDGFGAEGASTLSQQIIKMSY
                     LDYTNKTLARKAQEAWLALQLEEKYSKNDILEIYVNKVYMSDRVHGMQTASEHYFGKN
                     LKDLTLAQTALLAGMPQSPNNYNPYEHPEAAKKRRDQVLTNMYTHDKITKEEMTEAQK
                     TSITTGLRSKKDREDKIYKYDSYVTQVLSEIPKEYDVYRDGLTIHTALDRDAQEYTEK
                     MLNTNEIVNFTDDEMQAGIVLQDTKTGRVQAIGGGRKQKVTRGYNYATQVKRSVGSTM
                     KPIADYGPAFEYLDWSTAHILEDEPYTYSGGTPINNWDFAYKGPISVRQALYQSRNIP
                     ALKTLQAVGLDKSEEFVNKLGITYDEGQNVESNAIGANSSNPMQMAGAYAAFGNKGIY
                     NKPHTVTKIVLSDGQTEIDTEPQSTVAMKESTAYMVSDVLKDVLSIGTGTSAAVPGVP
                     AAGKTGTTNIPPEFTSKYYYPSGAARDSWFAGYTTNYSIAVWTGYDDKKKYVSASEQK
                     IAQRMFSKLMAHASAGKTTADFKMPSNVVSVPILKGSNPIARAAAGTASDKVSYELFL
                     SGTAPTKTASTPEDEKKKAEEAAKKKKAEEDKKKTDEEKKKEEEAKKKAEEEAKKKAE
                     EEAKNLTAPAGLRASYNAGSKQINVSWSAVDGATYEVTVNGSTTTVSSTSVSVSGGNP
                     GDTVSINVVAVKDGNRSPASSTTVKIPDS"
     gene            complement(22127..22618)
                     /locus_tag="IBJ56_000060"
     CDS             complement(22127..22618)
                     /locus_tag="IBJ56_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416347.1"
                     /translation="MAEFKYAVELTHPDFPAPDVILEEYDPESIYVSGLPFWQEQQFF
                     TKGGGVIPWKNETERACRKLAKHMTNLAESMEADLKVHKKPSPVTVRDALGIFLSILF
                     WSNHRPVQLDNLMDQIKTLETKPLNLDERLEYVLKRGNTYLGFRQLNELMLEQRKLIA
                     KRS"
     gene            complement(22611..23270)
                     /gene="nth"
                     /locus_tag="IBJ56_000061"
     CDS             complement(22611..23270)
                     /gene="nth"
                     /locus_tag="IBJ56_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HAM3416348.1"
                     /translation="MLSNKQTVLCIEEMAKMFPAAHCELVHKNTFELLVAVVLSAQCT
                     DVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILIEFN
                     GEVPKTHAELESLPGVGRKTANVVLSVGFGIPAIAVDTHVERISKRLGICRWKDSVVE
                     VEETLKRKLPKELWSDAHHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFD
                     G"
     gene            complement(23281..24000)
                     /locus_tag="IBJ56_000062"
     CDS             complement(23281..24000)
                     /locus_tag="IBJ56_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HAM3416349.1"
                     /translation="MNPKILEKWMAEGQVTLPQVLVKNYATIGLNEVELVLLLQIQSF
                     AAEAEFFPSMEMLTNRTTLPLEETIKTMDSLLKKGVIAIEQSQDNSRMISEQYNLAPL
                     WGKLVALYENKEADSKHEKELEKQTSLYTLFEAEFGRPLSPMEAEMLSAWVEQDRTSP
                     DLIKEALKEAVISQKLNFRYIDRILLNWSKQGVKTIEDAKRVAEEFHQNGRTSQAINQ
                     TEVKKSAGSIPLYDWLEKRKG"
     gene            complement(24150..25442)
                     /gene="asnS"
                     /locus_tag="IBJ56_000063"
     CDS             complement(24150..25442)
                     /gene="asnS"
                     /locus_tag="IBJ56_000063"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HAM3416350.1"
                     /translation="MKITINQASEFVGKEVTIGAWLANKRSSGKIAFLQLRDGTGFMQ
                     GVVVKAEVGDDIFATAKALTQETSLYVTGTINEDTRSPFGYEMAVSGVEVISESHDYP
                     ITPKEHGTEFLMDHRHLWLRSNRQHAIMKIRNEIIRASYEFFNKEGFLKIDPPILTGS
                     APEGTTELFHTKYFDEDAFLSQSGQLYMEAAAMAFGKVFSFGPTFRAEKSKTRRHLIE
                     FWMIEPEMAFYKLEDSLQVQENYVAFLVKAVLDNCRLELDRLGRDVSHLEKMVAPFPR
                     ITYTEAIERLHELGFDDIVWGDDFGAPHETAIADSFEKPVFITHYPKAIKPFYMPEDP
                     ENDQVVLCADMIAPEGYGEIIGGSERIHDLETLQARMEDFDLDQEAYSWYLDLARYGS
                     VPHSGFGLGLERTVAWISGTEHVRETIPFPRLLNRLYP"
     gene            complement(25456..26637)
                     /locus_tag="IBJ56_000064"
     CDS             complement(25456..26637)
                     /locus_tag="IBJ56_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HAM3416351.1"
                     /translation="MDLPLSKRVKGVAPSPTLAITAKAKQMKQEGIDVIGLGAGEPDF
                     NTPQNIIDAAIESMNKGFTKYTPSSGIIELKQAIVDKLQKDQFLNYETNQIFVGTGAK
                     HVLYSAFQTILDPGDEVIIPVPYWVTYPEQVKLAGGIPVFVETGFDADFKISAANFEK
                     AITKKTKAIVLNSPNNPSGMCYTKEELIAIGEVAEKHQIYILSDEIYEKLYYGNKADL
                     VSIASLSDRLYDLTIVINGVSKAYSMTGWRIGYAAANKEIIAGMSKLADHLTSNPTAN
                     AQYAALEAYVGSQEVPEKMYKAFEERMERFYPELSSIPGFKPKKPDGAFYFFIEVKEA
                     AHKKGFQDVDAFVAALLEEAKVAVIPGSGFGMPDYIRLSYATNPDLFQEAINRIKSFM
                     K"
     gene            complement(26660..27244)
                     /locus_tag="IBJ56_000065"
     CDS             complement(26660..27244)
                     /locus_tag="IBJ56_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HAM3416352.1"
                     /translation="MYLCENENAYRRRNSGNLEIEMSEIILRNRKPKRKIGKWIAIIL
                     GIIIVLVVAAFLYFRYAEKPVTNAETEALDRISGQVDLKTTDQFYLYNGPKEVYYVLT
                     GKNSKNKNIIVWVPKKKSDKVYVKFASDGITEQQARDKVTKEKNPKKILHVNLGMEKE
                     TPIWEVAYLDKNDKLNYFDINFETGEWYREIENL"
     gene            complement(27289..30075)
                     /gene="dinG"
                     /locus_tag="IBJ56_000066"
     CDS             complement(27289..30075)
                     /gene="dinG"
                     /locus_tag="IBJ56_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HAM3416353.1"
                     /translation="MKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTF
                     LNPEKPIPAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLER
                     EMTRAGISLGKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTA
                     DLLLLLLEKLENLPLPVIRQMTTISGSLKSYLPELLFEIEMRKERENKPLDPAFVEHR
                     GLVIRKKEVEKPTYSRADLLEFPETDEAKMALFKKAGAPLYARSGQFEMMNLVFQAMK
                     SGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLLQAQLFEKDVPLLTKL
                     TGFKVKASLLKGRDHYLNLFKFEQLLQEVDTQYDVVVTKLKLLVWLTETTTGDIDEVN
                     LSSGGELFWNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIVNHALLLNDHFS
                     GRETLPKYAFAVIDEAHHFADSARMQGSFVLSYRKIKYFLNQLGSLEKYSLLTRLAMA
                     FPEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVENSEKDAWNDKVY
                     YAAEKVLHLLKESEKNMETLLEQGKQEENELGEAESAFLEEMYAFLLDWKNMVKQLEQ
                     MLHKKSPILTIYLQADKNHSISSIRLKAVLMEVEPTLGKHFFAKKESVIMTSATLTVK
                     GKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPDDMPPIKDTPIERYTLELAKY
                     IRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLTKQFQ
                     MFDKSILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAFQ
                     TYSLPEAVLRFKQGFGRLIRRESDRGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQ
                     ADLLEEVSEFFKEG"
     gene            complement(30172..30555)
                     /locus_tag="IBJ56_000067"
     CDS             complement(30172..30555)
                     /locus_tag="IBJ56_000067"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HAM3416354.1"
                     /translation="MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKV
                     QIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQVGDVVIIMSYGMFTAEEAKTHE
                     PKIVVLDEKNHIEMILPEEKAHTTL"
     gene            complement(30559..31416)
                     /locus_tag="IBJ56_000068"
     CDS             complement(30559..31416)
                     /locus_tag="IBJ56_000068"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HAM3416355.1"
                     /translation="MLIIRNKQDLKEAILEQKKANKTIGYVPTMGFLHEGHMTLVSHA
                     RKETDFVVMSVFVNPTQFGPNEDFDAYPRDEAHDAKLAEEGGVDILFVPTVEEIYPTE
                     LATKLHVIKRVSVLDGADREGHFDGVVTVLTKLFHLVNPDNAYFGQKDAQQVAVVSGL
                     VEDYFFPINLRIIATVREADGLAKSSRNVYLTEKERKEAPVIHEALQLGRELIESGET
                     NEAKIVQVMTDKINEQPSHENIAYLALYSYPEFTPVTDWTKGIIIAAAVKYSKARLID
                     NELINVKRR"
     gene            complement(31420..32253)
                     /gene="panB"
                     /locus_tag="IBJ56_000069"
     CDS             complement(31420..32253)
                     /gene="panB"
                     /locus_tag="IBJ56_000069"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HAM3416356.1"
                     /translation="MKRPVDFFAMKENGEKITMITAYDYPSAKNVEQAEADMILVGDS
                     LGMVVLGYDSTVPVTMDDMIHHTKAVKRGAPDTFVVTDMPFMTYHGSVDETIQNTRKI
                     IQESGAHAVKLEGAGEVVNKIARLTEAGAPVVAHLGLTPQSVGLTGSYKVRAKSAQEA
                     QELMDNALAVEAAGAIALVLEAIPRQLAEKVSKALSIPTIGIGAGVETDGQVLVYHDI
                     IGYGISRRAKFVKAYADIDERIEPALASYVKEVKAATFPEVKHSFTMAEEDLKGLYGR
                     E"
     gene            complement(32420..32893)
                     /locus_tag="IBJ56_000070"
     CDS             complement(32420..32893)
                     /locus_tag="IBJ56_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HAM3416357.1"
                     /translation="MKKILLLLTSITVILTLGACGDNKKETEEKANQTEKESASFLTT
                     ISTKDFKQKMADKTTGFVYVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASE
                     KSRDDMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE"
     gene            complement(33041..34018)
                     /locus_tag="IBJ56_000071"
     CDS             complement(33041..34018)
                     /locus_tag="IBJ56_000071"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HAM3416358.1"
                     /translation="MKNNREKLLALFTESDGTYLSGQEIADSLGCSRTAVWKQMEALR
                     KEGFEIEAVRNRGYRLSATAEQYTKDALLLGLETKFIGQHLEIHESVSSTQIIAHQQI
                     ESSPEGTVIVADEQTAGKGRLLRPWSSKKGEGIWMSVILKPQIPIQKVPQFTFIASLA
                     ITEAIENSTKLEPKIKWPNDIYIGKRKICGVLTEMQAEAETIHAVIIGMGINVNQQEF
                     PEEIKDKASSLKLELGESVSRKALLQEILTSLEKYYELFLDKGFAPIKLLWETKAIPF
                     GEKLTASTTKGKIHGQVKGISDEGVLLLQDALGEVHSIYSADILLDNEK"
     gene            complement(34008..35189)
                     /locus_tag="IBJ56_000072"
     CDS             complement(34008..35189)
                     /locus_tag="IBJ56_000072"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HAM3416359.1"
                     /translation="MNDVFLKALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIA
                     TSAFPEEVKEIFQTSYDTGIAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIR
                     SLEEDLKRRDFTMNAIAMDEHFALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMR
                     AVRFLSQLDFELDKETEKALESQIELLQHTSVERITVEWLKMMKGKAAKRAIELLLKV
                     KMETYLPGLKDEKSALSEFASWDWEKRTTEESIWLGLVVAVKPNNVNAFLKAWKLPNK
                     TIQLVNKAYQYALNMKETWLTEELYHAGKAVFSLVNELNVIRGQENNQHKVSQAYEAL
                     PIHSKKDLAITGADLLKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWLGYHE
                     E"
     gene            complement(35204..35608)
                     /gene="mgsA"
                     /locus_tag="IBJ56_000073"
     CDS             complement(35204..35608)
                     /gene="mgsA"
                     /locus_tag="IBJ56_000073"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HAM3416360.1"
                     /translation="MHIALIAHDEKKDLMVGFATAYKHLLEPHQLYATGTTGLRIIEA
                     TGLTVHRFKSGPLGGDQQIGARISENKMDLVIFLRDPLTAQPHEPDVTALIRLCDVYE
                     IPLATNIGTAEILIRGLGAGFLDWRDLRRNDE"
     gene            complement(35624..36415)
                     /locus_tag="IBJ56_000074"
     CDS             complement(35624..36415)
                     /locus_tag="IBJ56_000074"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HAM3416361.1"
                     /translation="MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEI
                     VEFSSLDVPVFGNLSEMLEEIKPDCVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTP
                     EQISELKSIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAP
                     SGTAVKTAEMMAETREFVKQGAADEVELIEGARGAEYEGMRIHSVRLPGLVAHQEVIF
                     GAEGQGLTIRHDSYDRISFMSGVALSVRKTKELETLIYGLENILD"
     gene            complement(36412..36747)
                     /locus_tag="IBJ56_000075"
     CDS             complement(36412..36747)
                     /locus_tag="IBJ56_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HAM3416362.1"
                     /translation="MAKTMAEIQKEVDDFIGGFEEGYFSPLAMMARITEETGELAREI
                     NHYYGEKPKKTSEPTKTVAEELGDCLFVLTCMANSLDIDMEKAHDTVMAKFKERDKDR
                     WTKKEEKAK"
BASE COUNT        10549 a         8034 c         6342 g        12058 t
ORIGIN      
        1 tcagctgctt tgtagtttac atctttaatt ctgctttact cgcgaaaaat cctgctaaac
       61 gatttttcac ttttcggatg ccgccagctt catcactttc taaattcatc ggcattaccg
      121 gttcatgtaa gctcattcgt agtaagaacc agccttcacc aatcgcacct ttcgtattca
      181 cacgaattcc ttcttggttc acaggttcta attccatatc cggatcagct tctacgaaag
      241 tcagaaaatc agctagaact tcttttccat aagctttaaa atcggttgcg gtaatactca
      301 aacgaatttc ttcgctttca gccggttctc ttaaatcggc tattaaatct ggcaaatctt
      361 ttccattttt tcgtaaagtg gcataagtca ttaaaatttt ggcaatgaga taagcgccat
      421 catccaagaa ataattttct tttaatgcgg catgaccact tacttcgata gcaatttctg
      481 atggtgttcc gtctgcattt aggcgcagtg cttcattgat aacattacga taaccacgtt
      541 taaatcggtg ttgtttcccg ccttttgcct cgataaaggt ttgcaaatgc ccagatgttg
      601 tggagtcagt cacgatagtt gttcctggtt tttcttctaa aataatacta gagataacag
      661 caattaatgg gttgcggttt aaactttcgc catttttatc cataatcgca gcacggtcta
      721 catccgtatc aaaaatcacg cctaaatccg ctccactagc aaggaccgct tttttcaaac
      781 tagccatagc ttcctcattg tcagggttcg gaatatgatt aggaaaattt ccatccggat
      841 ctaaaaactg gcttccagaa atgtctgagc caagttctgc caatactttc tcagcaaaaa
      901 agccgccagc gccgttccct gcatcgacaa taatatggct tcctagaagt ggcttcattt
      961 tgtcagctgc atctgtgatt ccagctctaa ttttatccgt taagtctgct gcatatgtag
     1021 aaagtaaatc ttgttttgtt accttcccaa gatttagtcc attttctatg aatgatttat
     1081 ctgcgtgagc cacgatataa tcaatatctt cgtgttcagc tccaccagat ttcgtaaata
     1141 attttagtcc attatacata aaaggtaagt ggctcgctgt aatcataatg ccggcatcgc
     1201 agttatagtc ttcgtactga gttgccataa acatggccgg cgtagttgca agccctacat
     1261 ccaccacatt gattcctgca aaagttaacc ctttgacaag tgccgctttt aaacgttcag
     1321 ctgaaagtct gctatcatgg ccaattgcca ctttcgcttg accttccact tttttctcct
     1381 cttttagcca tttcgcaaag ccataagcaa tcttttctac acgttcgtct gttagcgtaa
     1441 tctgatattt ttccgtagca atagctattc cacgtatgtc tgatccgttt tgcagtgctt
     1501 ctaacgcttt cgtttctgat tgattcatgt cattcctcca gcttctgtat ttttcccctt
     1561 cattatagct taaattgcga aattttcaca tagcttttac aaaagatgtg ctctattcgc
     1621 gataataatt tgcaagtcaa cggttaattc ttccggtggg tttcccagta attcgctttt
     1681 tttatccgct tcaatatgcc aaccaagtgg cgtcatttca agaaaatctg caaataattc
     1741 tttggcaatc ggcgctttgt aggtcactcg ttcgacatgt tctacgctta acttttctgc
     1801 taatcgtgat gtgaccgact cattcgaata actacttttc tcatcaacat aaataaattc
     1861 acgtaattcg cgtaaataat tcgcttctgg cactactttt aacaaaaacc catccttctt
     1921 taaaagccgt ttgaactcca cgtaattcga tggcgataaa atatttaaaa tgacatccgc
     1981 cgtctctgct tgattcggac aattggctaa atcagctacc gtccaagaag taccaggata
     2041 gtcgcgtgcc gcttgtttca ctccctcttt ggcgatatct aagccaaccg cttggacatt
     2101 aacaccagtc gcttgtaaat ttgatacgac tcgcgccaaa tgacttcctt ccccgcaacc
     2161 cgcatcatat aaaacaagtt gttctttttt cttctccgca ataatttctg tcactcgttc
     2221 gattaatttt tcaaaaaagc cactcgcaat cactttttta cgggattcga ataatgcttg
     2281 atcgtatttt gttttatgcg cttgttttag taaatgtacg taacctggtt tggcgatatc
     2341 aaacccgtga ccttctaggc atacaaatga ctgcggctct ttaaactcga atgcttcgcc
     2401 acaaatcgga caagcaagaa gcgccatatt ttctttcaaa gcgcgtttat ttatctccat
     2461 ttttgataac aattaatact cactccactc gaaaaacgtt gcccgcaaac aggcaacgtt
     2521 tctactaatt tctttcatac gtataaaaag tgtaattgta cttatttttt tcatcttttt
     2581 catggaattc tttcgccact tcggaaaaat tctcccaatc cacttcagga aacgcagtat
     2641 cagcctcaaa ctctgcatca atttttgtca caatcagctg atctgccaca tccataaata
     2701 aacgatagat ttctgcacca ccaactatat agattgtttc ccctgtctca gcaagagcta
     2761 aaacagcttc ttttgaatga agtatctctg catcatctaa cttgagacct tgatctcgtg
     2821 tcaatacgat tgtctttcta tttggtaaag cttttcctaa cgattcatag gtttttcgcc
     2881 ccatgacaag tgttttccca gtcgtcgttt ttttgaaaaa ctgcaaatct cctggtaagt
     2941 gccacggcat tttgttatct tttccaatat taccagcgcg gtcttgtgcc caaacaaaaa
     3001 taatcatcca agaaaacctc ccttatactg aaattggtgc tttaattgct ggatctggat
     3061 tataaccatc cagtgaaata tccgctacat caaaatcaaa aatcgttgct ggtttatctg
     3121 aaagcactaa ttttggaagt ttgtgcggtg ttctagacaa ctgttctttc acttgctcaa
     3181 tatgattatt ataaagatgc gcatcaccca ttgtatggat aaactcacca acttccagcc
     3241 ctacttcacg tgcaatcagg tgtgttagaa gtgcatagct tgcaatatta aacggtacac
     3301 caaggaaaat atcggcacta cgttgataca gctgacatga taattttccg tccgctacat
     3361 aaaattggaa tagcgaatga catggcggta aagccatatt cggaatatct tctggattcc
     3421 aagcagacac aatcaaacga cgcgagttcg gattcgtttt aatcatttca atcaaatccg
     3481 ctaactgatc aattgtttct ccttgtgaag tcttccattc gcgccattgt ttaccgtaaa
     3541 tattacctag ctcaccgtat ttattcgcga acgcttcgtc ttctaaaatc cgagctttaa
     3601 acttctccat ctccgcttga tacacttctt tgaaagctga atcacgctca gcacgcagtc
     3661 caaagtcagt catatcttcg cctttataat catcgctttt cacaaaacgc tcaaaagccc
     3721 attcattcca aatattatta ttatgctgta aaaggtagcg aatattcgta tctccatgta
     3781 aaaaccatag cagttcactt actacaagtt taaatggtac ccgttttgtt gtcataatcg
     3841 gaaagccctc ttgtaaatca aaacgcattt gataaccaaa tgtgctgatt gttccagttc
     3901 cagtgcgatc tcctttttgt gttccattct ctaaaacgta cttttctaaa tccaaatatt
     3961 gtttcatcgt tcgcactcct tattccgcgt attgtgataa aaattcccag cgttccatca
     4021 tttgttcgag ctccgtttct tttgccgtga tgagttcgct aatttctgct gcttttgtaa
     4081 agtctgctcc ggtttgttcc aatgtttcat taagcgattc aatggtttgt tctaattcac
     4141 taatggcatc ttcaattccg tcccactcga gttgttcttg gtaggtgagt ttaactttct
     4201 cttttttctc aggtgctgcc ttttcgaccg aagtattcgc catttttttc attgatttcg
     4261 ctggttttgc tttagcctcc agctctttca aataatcact atattcaccg tagaaaattt
     4321 ctacttcacc aattgctcgg aaaacgagca atttgtttac gactttatcg aggaaatatc
     4381 tatcatggct aaccgtaatt acggtaccat tgaatgattc taaatagtct tctaatacgg
     4441 ttaatgtttg cgtatctaag tcattagtcg gctcatccag taataagaca tttggtcgtt
     4501 ccatcaaaat gcgaagtaag aataaccgtc gtttttctcc acctgataag ctaccaattt
     4561 tcttcccgtg ggaatttggt gggaataaaa atcgttctaa catcgcactc acactgatta
     4621 cttcgccacc agaagttgtg acttgctctc ccgcttcttg caaataagca atcattcgca
     4681 tatccgggtc catttcttca ttttgttgcg tatagtaacc gatttgtacg gtttgacctg
     4741 tgactacttc cccagcatct ggcgctagtt ttccagccaa catgttcagt aaagtcgatt
     4801 ttccagttcc gttgttccct gtaataccaa ggcgttcacc aggttggata atcaagctga
     4861 aatcctgcaa tacttgtttt tcatcaaagc gtttttccaa gtttttcagt tcgaaaacat
     4921 cttttccaag acgactagta acaaaatcaa tcgccagttc tgagtcatcg gtttttgttt
     4981 tcactttttt ctctaaatcg tggaaacggt cttgtctggc attttgttta gtggcgcgcc
     5041 cttgaggacc gcgacgcatc catgctagtt ccttacgata aaggttttta tttttctcag
     5101 attcacggac ttcgttttcc atccgaatgg ctttagattc catgaatttc tcgtagttcc
     5161 caacgtatcg ataagccgaa ccccggtcga gctccaccat gtgatttgtc actcggtcaa
     5221 gaaaataacg atcatgggta acaagcaaga cagccccttt aaagcgattt aaatattctt
     5281 ccaaccaacg aattgactga aaatccaagt ggttggtagg ctcgtccaaa atgagtaaat
     5341 ctggcgtctc gattaagact tgcgccaaac ctacccgttt tcgttgccca ccagaaagct
     5401 cgcttatttt cgcggttaaa tctgtaattc ctaaacgctc caaaatcgtt ttcgcttctg
     5461 tgttcatatc ccaagccgca ctagcatcca tttcttggct ggcggctgta taagcatcgt
     5521 gtaatttggt attttccgca tcaagtgaca tcgcaagtaa cacttcttcg tacttgcgca
     5581 ttgcccgaag cgccgcagta tccccgtcaa aaacagccga aagaactgta tcttcttcat
     5641 taaattcagg atcttgcgcc aaataaccaa tcgtataatc ttttgctttc gtaacagtac
     5701 ctttatcccc agattcacta ccagaaataa tttgcaataa cgtcgatttc ccggtaccat
     5761 ttacaccgat taaaccaata cgttcgccct ctgttatcgt tagcgagata ttttcaaaca
     5821 ggcttttttc accatatgtt tttgttaaat tttccacttt taattgtttc atttagtccc
     5881 atccatttcc tgttcgtcct tatctattct agctgaaaac atagaacata gcaattgctt
     5941 aagatgaaaa aagttccaaa agcggctctt ccacttttgg aacttttact tttaaaataa
     6001 accttgtgca ttcccatttt catcgacatc catattaagt gccgctggtt ttttcggtaa
     6061 acctggcatc gtcattacat cgcctgttaa agcaacgaca aaaccagcac caagttttgg
     6121 aatgaattcg cgaatgtgaa taacaaaatc agttgggcgt ccaagtaatg ttgggtcatc
     6181 cgataaggaa tattgggttt tcgccataca aatcggatag cggtcccaac catatttttt
     6241 gaattcaacg atttgtttct gcgccttgct ggaaagttcc acaccaatac caccgtaaac
     6301 cttcgtcaca atcgcttcta gtttttcttc tatcgaccac gcatcatcat aaatgcgttt
     6361 gtagtccgct tctccacttt caacagccgc aatgacttta tccgcgagtt caaggccacc
     6421 gtcgccgcct ttttcccaaa cttctgtcag agagaaagga atgccgtgtt cttcgcaaag
     6481 tgcttctaat ttcgctactt ctgcgtcaga atcggtaatg aatttattaa tggctacaac
     6541 ataaggaata ccaaatgttt gaatagattt cgtatgtttt tgtaaattag taaaaccttt
     6601 agctagcgca tccacatttt cttcgctaag ctcggttttc aaagcgccac cgtgcatttt
     6661 cagtgcgcga atcgttgcta caataacaac gcaatctggc gcttttccaa gggcaggaac
     6721 tttaatatct aaaaatttct cggcaccaag gtctgcacca aatccagctt ctgtcactac
     6781 atactcacct agtcgaagtg ctgtgcttgt cgcagaaaca ctattacatc cgtgagcaat
     6841 attagcaaaa ggtccaccgt gtacgatggc aggtgtatgt tctaatgttt gcaccaaatt
     6901 aggttttaaa gcatctttta atagtaaggt tagagcgcct tcgtagccca tttcgccaac
     6961 tgtaattggt tcttttttat agttataacc gatcacgatt tcacttaaac gtttctttaa
     7021 atcttttaaa tcacttgcta aacaaatgat cgccataatt tcagaagcaa ccgtaatatc
     7081 aaaaccgtct tcacgtggaa ccccttgaat aggacctcca agaccaacaa ccacttttcg
     7141 aagtgcacgg tcgttcaaat caactacacg tttccaaacg attcttctac cgtcaatatc
     7201 taggtcattc ccttgttgca tatggttatc aataaatgcc gataaagcat tattagctgc
     7261 tgtaattgcg tggaaatcac cagtaaaatg taaattaata tcttccattg gaataacctg
     7321 cgcgtatccg ccacctgttg ccccgccctt aatacccatg gtaggtccga gcgatggttc
     7381 gcgaagtgca ataacggttt tcttatcttt tttagagagt gcgtcgccaa gaccaactgt
     7441 cactgtcgat ttcccttcac cagcaggcgt tgggttaatc gccgtaacaa gaacaagttt
     7501 tcctggttct ttatctttta gcgagtgaat ggtatcatag gataactttg ctttatactt
     7561 tccgtaaagt tcgagtgcat ctgcgtctag tcctaaatgt tccgcaatag tcgtaactgg
     7621 tagaatttct gcttttgatg caatttcaat atctgatttc actttatttg acatgatatc
     7681 ccctccgaat atgtatattg taacaaagaa ttaagatgtt ttggcttctt tagtgcatca
     7741 aaaaagcgcg acaccaagcg atgtaacacc attttgattc taaagtaaag cctgattgcg
     7801 caaaaatcaa catctcaacc ttggattacc gttattcctt tgtttctggt ttggtcgtct
     7861 ccatcgcctt gagcgtcttc agtgcatccg gatgattttc aaaaaactga acaacatctc
     7921 caattcggtc aatcgagttc cagctcaagt ggtgttcaat accttccaca tcatgataaa
     7981 tatgggacgg atctacgcca ataatactta aaaaactctc taataatgca tgtctttcta
     8041 ggagcctttt ccccatttgt gttcctttag gcgtcaaaat taatccacga tatttctcat
     8101 agattaaata ttcgtcttta tccagtttct gcaccatttt tgttacagag gaaggatgga
     8161 caaatagctc atcagcaata tccgaaaccc tggcataacc tttcgtctca ataagggaat
     8221 agattttttc aatataatct tccatactag gtgttggcat agctataccc tccaacttaa
     8281 attctttcac atagccaatt gtactataat atcgcccttt ctaaaagcaa ttaccctttc
     8341 aaaaacgaaa tttctcctag agcggtcttc cgaaaaaaaa ccgtaattag taccaattta
     8401 agacatttaa gtcaaaagta tgcccttaca agtccaaaaa tttaaaaaat atcgaaaatc
     8461 agcttgacgt ttataggtat tttgatttat agtgttagta tcatatgcgg caacgctatg
     8521 aactgaaaag gtagtatttg cgagaaattt ttttaagtta aaatgaaagc gttttaacaa
     8581 atgattctag caattattag ccatacttag gaggatttat ttcaatgcaa aatgggaaag
     8641 taaaatggtt taacaatgaa aagggttacg gttttatcga atcagacggc ggcgaagata
     8701 ttttcgttca cttcacagcg atccaaggtg atggctacaa atctttagaa gaaggccaag
     8761 cggtaacatt tgaagtagta gaaggtaatc gcggcgctca agcagccaat gtagaaaaag
     8821 cctaatccag ttgccaaata gacacggact taaaaccggt atccttttac cggttttttt
     8881 attgcaaaaa aatagctttc cttctataat aaagccacat ctattcatct aaataggagg
     8941 cacataatat ggaagttttc gtcgatggtg caagtgcggg aaatcctgga ccaagtgggg
     9001 ctggaatcgt cttaaaagca gaaggtattt atgaacaatt cgccattccg ctcgcagtta
     9061 tgacgaatca tgaagcagaa tttattgcga ttaaactcgg actggaagaa gccataaaaa
     9121 aacaagctac attaattcgt ctatactcag attcgaaagt tgcaatcgaa gcaattcata
     9181 aacgacatgc gaaaaatcct ttattcaagc cgcatttaga agcaatttta gaaatggccg
     9241 attcatttga attgtttttt gctgaatggc gtaatgtaag tcaaaataaa caagccgacc
     9301 aacttgcgcg ccaggctata aaaaaacaga agcaacctgg agtcaaataa ccagattgct
     9361 tctatttttt attcgatatc gcgcgttaac gtttttaaac cgtatttttc aactacagca
     9421 aaagcatcct cgcggaaacc gtcatatttc aagctaggca agtctatttc tagtgggact
     9481 tctgtatgaa tccgagctaa tttttgactt aattctagca tcgctaagtc ttcttggatt
     9541 ttggtttgtt gcgctggttt cagtttatcc aggttgttca agacgccttc aatagactca
     9601 aattcttgaa taagcttaat cgctgttttt tcaccgattc cacgaacacc cggataacca
     9661 tctgaagtgt cgcccattaa tgctttcaca tcaataaatt gtcttggaga aatacccatc
     9721 tcttcaaaaa atgtcgcttc atcatatcgt ttataattgc cgtaaccttt ttgcataatc
     9781 cagacatcat tcgtcggtgc gattagttgc agtaaatctt tgtcgccact taaaacagtt
     9841 gtagcaatcg tattactcgc ttgaacggta attgtcccaa tacaatcatc tgcttcaaaa
     9901 cccggcacac ctaaattgac aaagccaaat ccagcagcta cctctttcgc taaatcaaac
     9961 tgcggaatca tttcttctgg tggcgctgtt ctgcctgctt tataaccatc atataattca
    10021 tttcgaaatg tttgcgaccc catatcccag caaattagtg tatgcgttgg gttactctgg
    10081 cgaatcgctg caaacatgtg gcgcataaaa ccttgcaccc cattcgtcgg gattccatgt
    10141 tggttaaaca taaattgttt ggaaacggct gttgcataaa atgctcggaa aagtagtgcc
    10201 attccatcaa caacgagcaa attttctcga ttttcggtca tatataatcc tccaatttcc
    10261 ttctactgcc atctattgta gcataattat aactggctcg cagaaaaaaa ggagcttttt
    10321 accagcttgc ttttgtcacg ccgggtaatt gtccttgatg tgctagttca cgaaaacgaa
    10381 tccgcgacat accaaattta cgcatgtagc cgtggggacg tccagttagt tcacaacgat
    10441 tgtgtagccg ggacggggaa gaatcgcgtg gtaatttgcg taattcatcg tagcggcctt
    10501 ctgcttttag cgttcggcga agttccgcat atttttccac gagcgcttgt tgacgttcat
    10561 gtttggcaac ttttgatttt ttagccatgt gtctctcctt tcttaaataa taatcattac
    10621 gatttacatc atacgccgat ttaattagga aagcaagtct tctgttttaa aaaaaccgat
    10681 atccagttaa actgaatatc ggttgtccta ttatttagtt ccaactatcg gaccatacgc
    10741 gttagagaaa ccattattat aaggcactcc tgctttattt ttacctgcat cccagttcac
    10801 cgaccaagtc ataatccctt tcactggtgt gccttttgct tgtaaacgag tgaaaacatt
    10861 tttgacgatt tgcggatctt ttacataacc agttgcggct gcatccacat tggctggtaa
    10921 accgaacacg aatttattag ctgggatttt caagtaacca cgagtcccat taataaagga
    10981 gtccgccata taatataaga aagattcttt taatgtatca ttattttgcg caatccattg
    11041 gtttgtttca tcaacccaaa caccatcgcc accttgattg tatagttgtg gcgcaatata
    11101 gtcataataa ttagcaagtg aggttaggta gctttcatag gcactacctg gttttaaata
    11161 aggaaattct ggtgccatcg taattaggaa atttttccct tccgctttat aatgatcttt
    11221 aacgattttt agcgctgctg ggataaccgt tttattatct cccgcggtaa tcgcactttg
    11281 ttctaagtcg atgtctaatc catcaaagcc atatgtttct acttggcgga taatttcatt
    11341 cgcgaacgcc tcttcatccc cagcttttag ttccacgtgt ccatctgctc cacctagtgc
    11401 caaaagaacg gcccgacctt ctttatttaa tgcgccgact tgtgctctga aatcgctatc
    11461 atttattccc actggtttaa atgtcggaat acgatttacc ccgtcccctt tcataaagga
    11521 aacatctacc acgttataag ctttcggtgt atcttttagg gcgatatcag ccgaagtccc
    11581 ttgttgatag ccatcatttc cggaagattt ccaactatgc cagtacccaa ctagcacctg
    11641 tttgttagaa atatctggca ttacagaagc gtcatccgtc gccgcttgtg cttgactacc
    11701 aaatgccccc agtcctgcac caactaaaag taaagacaaa ccaccaacca ttacttgttt
    11761 tccattcatc tacttttccc ccttacttta tctaccccaa gcttgctttt ttggagctac
    11821 tagaaaatac ccatcataat gaaaataaaa ctagaaaaac agcaaaaaag cgaaattgat
    11881 atagaccaat tccgctttca aataaatgaa tgtgtataag taactgagaa aaaatagccc
    11941 aattaaaact gttttatttt ttacttcgca tgttgtggtt ctggatctgc tactttttta
    12001 tctttgcgat gtggaatcat attgaaaatg atattcagtg taattgctgt cacactgccc
    12061 gcaacaattc cattactcgt aaataagcga acaaaggatg ggaaggcatt gaacaaatct
    12121 ggtacgactg taacgcctaa accaacacca actgcacacg caatgattaa caagttttct
    12181 tgagaagtga aattaacttt tccaagcatc ttaatccctt gtgcgacaac catgccgaac
    12241 atcgcgacca tagcgccgcc gagaactggt gtcggaataa tcgttgtcac tgcgccaatt
    12301 tttggaatca gaccaagaac aataaggaaa ccagctgccg cataaatcac tttacgtgtt
    12361 ttaataccag aaagttgaac gagtccaacg ttttgcgaat aagccgtata ggggaatgta
    12421 ttaaatacgc cgccaagcat aatcgcaagc ccttctgccc ggtaaccacg cgttaaatct
    12481 ttttgcgtta atttgcgttc ggtaatatca gataaagcga aatatactcc cgttgattcc
    12541 accatgctga caagcgcaat taaaatcatc gtaataattg ccggccactc aaaggtcggt
    12601 gtgccaaaat aaaatggttt tggcatatgg aaccagctcg cctcactcac aggaccaagc
    12661 gagatccctt tataaagcgc tgcaaaaagc gaaccaccaa ccagacctat taaaacagca
    12721 atcgccttcg aaaacccttg tccaaaacga tacactaaaa taattaaaag taatgttcca
    12781 aaaccaaggc cgagattata cattgagcca aaatcttttg ctccttctcc accagcaaga
    12841 ttattaattg caacgggaat aagtgttaaa ccaatcactg ttacaaccga accagtcaca
    12901 acaggaggga aaaatcgtac aactttggag aaaaatggtg ctattaataa tacaaaaagt
    12961 cctgaaacaa taatcgaacc gtaaatcgcg ccaatgccca tatcttgtcc aattaaaata
    13021 atcggcgcaa tagcttgaac cgcacatcca agtacaaccg gtaaaccaat tccaaagaag
    13081 cggttaaccg ttaattgtag caatgtcgca atcccgcaca taaaaatatc aatcgaaact
    13141 aagtaagtca tttcttctcc attaaaacct agtgctccac caattaatag tggaacgatt
    13201 actgctcctg catacattgc tagaacatgt tgaaatccta aagctgcaat tttcccttta
    13261 cctaacattt actcctattc ctcctctaaa aataagattt cttcgttttc aagtgaggca
    13321 attcgtgcta gtgaataaac tggaatccct gttttattta ataattcgcg accttgttgg
    13381 aaagattttt caatcacaat cccaattccc gccacttttg ctccggcatg ttctgcaatt
    13441 tcaagtaagc cgagtgccgc ctgaccattt gctagaaaat catcaataac taaaatcgta
    13501 tcatctgctg ttaaaaattg ttttgataca gaaatatcat tcgattcttt tttagtgtac
    13561 gaatagacag tgcttgtgaa taaattgtcc gttaatgtca ctgatttttt cttgcgtgca
    13621 aacacgactg gtacggaaag cgcgagccct gcaaaaacgg cgggtgcgat acccgatgat
    13681 tcaatcgtta caattttcgt aatccctaaa tcttggaacc gtttagcaaa ttcatttccc
    13741 atcgcttgca ttaaaaccgg atcaatttga tgatttaaaa aagcatctac ttttaaaaca
    13801 ttccccggta aaaccgtacc tttttcttga ataaactctt ccagtaattt caaaatgatt
    13861 ctcctttcaa aataaaaaaa ctgcttctct aaaaatagag aagcagtata gaagccacca
    13921 attttcggag tgacttcttt atacaaacta ctcatagtcc ggttatttac ggtaaccagg
    13981 tagaaactcg tcgcccaatc gcaactatta tataagtatt tcggttttaa gttatgttgt
    14041 ttattatagc tttctaaagg agcagggtca agctaatttt ttacttattg aattggtaaa
    14101 cataagcgta tcttttttct agtaaatcta gcaaatacgt tggatttaag ccttctccag
    14161 ttgtatctgt tagaatctcg agaggtttct tcgttttacc aaatttatgc acatgttcag
    14221 tcaaccacgt ttttaattcc gaataatcat cgcttgcgat aatcgcatcg atattcggaa
    14281 tttctttttg catttggtta aagaactgcg ccgcgtacat taaacctaat gcataagacg
    14341 ggaagtaacc aaaatcgcca ccagcccagt gaatatcttg cagaacgcca tttgtatcat
    14401 tatctggacg aatgccgaga tattcttcgt atttgtcgcc ccatgctttc ggtaaatctt
    14461 ttacttctaa ttcaccgtta ataagtgctt tttctagttc ataacgaatc ataatatgca
    14521 gcggataagt taatgtatca gcttcaattc gaatcagcga actttcagag atgttcactg
    14581 cgcggtaaaa atcttccaaa gtcacatgat caaaagccgg ttttgtaatc gcttggaagt
    14641 cagcataatt acttttccaa aatgctaaac tagaaccgat aataatttca taaaataatg
    14701 attgtgattc atgaatgccc attgatgcgc cgtttgcaag tggagtacct acaagtgctg
    14761 catcaaaatt ttgttcgtaa atcgcatgac caccttcatg aatcgtacca aaaacagcca
    14821 ttttaaaatc attttcattg taacgggtcg taatacgaac atcgccagta tttaaaccag
    14881 tcgcaaaagg atgcacggtt tcatctaaac gacctgcttc aaagtcaaag cccattttat
    14941 tcagaatgcg aatgctaaat tctttttgtt ttgcttcgga tattttggta tttaaaatcg
    15001 tcgcatctgg cttcacgcct tcatttgcga ttttttcgcg aatcgccata attccgtcgc
    15061 gtactttttc aaatacggaa tcaagcacag atacggttac acctggctca tattgatcaa
    15121 gtaatgtgtc atatttattt tcttcataac cccaatattc aacaaattta cgcttcattt
    15181 caaggatttt tgttaagaat ggctcaaaag ctgcaaaatc attttgttcg cgagctgttg
    15241 tccaagccgt ttctgcttgc gctactagtt tagtatattc cgcgtattct ttacttggga
    15301 tttttttgtt taaatcatat tttttttgag attcttctaa agttttaaga gtgatttcag
    15361 atagattttc tttatcaagg ttaagtccag caataaaagc agccatttct tcagatgttt
    15421 gcatattgaa aatctcttca gatagaacgc caataacatc agagcgacct tccattcctt
    15481 ttgacggggc gcctgtacga agatcccaat aaactaatgc cagtgcttct tccagtgctt
    15541 ccatcttttt aatatacgct aaaaattcct cttctaatgt ttctaccaaa cttaactcct
    15601 ccattcaatc aatcttcttt tttaggacgt ggttttcttg gaccccagta ttgatataaa
    15661 tctgtgcgca agtaaccatt gtataatttc cgttttttcg tcgctttttt accataaact
    15721 tcttcaaaaa gttcataaga ggtaaggaca tatactgacc atgtcggcat gcgtttataa
    15781 acaataccca tttcgcggta aagttggcgc actgcttcct cgtcttctaa acgttccccg
    15841 tatggtggat tcgcaacaac gaccccgtac tcatcttctg tttgaaagtc agctacttgt
    15901 agttgtctaa aggtaattaa gtcaccaagg ccagcttcga ccgcattttg ctttgcgatt
    15961 tcaattaaac gagcatcaat atcgccacca ataatattta gcggttgatc atagttagct
    16021 aaatcttccg cttcttgtct cgcatccgcc caaacttgct tcggcatcca atcccatgtt
    16081 tctgacacga actcgcggtt aaaaccaggc gcaatatttt gcccaattag tgccgcctca
    16141 attggaattg ttccagaacc acaaacggga tcataaaatg gtctatctgg atgccaactc
    16201 gtaagtagta caagtgccgc cgccattgtt tctttgattg gcgcactacc ttgtgctaaa
    16261 cggtaaccac gtttatgtaa tcccgcacca ctagtatcaa ttgttagcgt cacttcatct
    16321 tttaaaatag aaacttctaa cttaaataac gcgcctgttt ccatcaaacg accagaacga
    16381 cgatactttt cactgacacg gttaacgatg gcttttttta caatcgcttg gcaatcaggc
    16441 acactataaa gcgttgactt aactgattta ccagccactg gaaactgtgc atcaagcggt
    16501 aaataatctt cccaaggtaa agctttcgtc ttttcaaata gttcatcaaa tgtcgttgct
    16561 ttaaaaacac caaccacaat tttcacacgg tcggctacac gaagccatag attggctcta
    16621 gcaattgcag ataaatctcc ttcaaaatat actttaccgt tttctacttt tgggtcatag
    16681 cctaaacgcg ctacttcttt cccaacaatt gcctctaaac ccgaagcagc cgttgccacc
    16741 aactgaaatg atttcattgt ttcccatcct ttaattaaat ttctaatgaa aaaagctgtt
    16801 ttaagaggag gaggtttgtt ttaaataggc attcaaccag gtcgaacacc caccttaaaa
    16861 cttgcgctcc ggccttctaa aacagccttc aatgttaaat taaatcctgt aaataacgct
    16921 ctgtaagcca tgttctgttc tttactacgt acagggtaat agtaaagaga taaccatcta
    16981 tctgcgcaaa aatacatttg cgcctcgtcc cttgttcttg attcctcggg aaaagtgccc
    17041 ctaccataag tttgagtttc tcgctcgtgg ggtttacctc gttccacttc cgagcatttc
    17101 tgccggaact tcgtcactgt ggcaccttca aggttataag accatatccg aagacttagg
    17161 tcattcacct gccgtcaaac cggaaatccg gaatgccctg gcttattgtt tgaccaggca
    17221 cgatcactac gggcatcaca gcaccgtgcg agcatggact ttcctctgct tccataagaa
    17281 aacagcgatt atccgaacgt tattcattta ttcttaactt acttatacta gcatacctat
    17341 tcgttatcgt ccagcttatt tccaaaaaca tgtttttcta aattagaaag acgctttaga
    17401 atatcaaagt tggtcgttcc agcaggttgt gccgctgctt ggaaagttgg agctggttgt
    17461 gttgaagttc taagtggagc attatcaagc tcttgtacaa gtcgaatatt ttccgcttga
    17521 agtgcttcga tttcttgcgt aaatgtactg taatctttaa taaccatgtc taaaaactcg
    17581 tcaacatctt caggactata accacgaagc ccagttttaa attctttttc caaaatttct
    17641 ttacctgtta agtgatactc aaattgttcc gaagtcatat aactccacct ctatctctat
    17701 tcttacgtat ttttgttcta atcatatact tacccttatt ttttcaaatc tcacaccatt
    17761 tgtcaatcta ttcgagtgtt ttttatgaaa ataactgttt acttccatat taaaacgttt
    17821 ggttcatatc ctctacaact tcttggagtg cataaaaatc aatacagtct atataataat
    17881 tagactgttc ttttgcttga atcgctcggt cataaaagaa tttcggcgaa ccttcttttt
    17941 ctaaatcata tacaagtaat gcgccatccg tattatcaat aataaaacca tctcttgccg
    18001 caaattgcgc tggactttca taaggacgct tcgtaataaa agcatggtaa tcggcttttt
    18061 ctagtacttc gctcgcccat aattggttcg cttcattcca gttagcactt tgcttttcaa
    18121 acggttcaag gattgctagt ttaatcggat agtctgcttt taattctgca accacatcgc
    18181 cagcccaaag ttcaattcct aactgaccag aaataatcac ccattcaagc ccatcttcca
    18241 cgagtggaag caaatgccgt ttaattgttt cttttatata aaccgcttca tctgcatcct
    18301 ttttaaaaat tcccagttca aaatttttat accccgtcac tgcgatggat ttcacatcaa
    18361 ttcctctttt ctttttaaga aatctctcac tctcgttagt gtatacttgg tagattggta
    18421 gtgatctagg aagtgtttat aaaaagactt tccattaaat gcacttactg cagtcatttg
    18481 aacattatca caagcttgtc ttaattgtag ttctcctaaa taaggaggac gctctttgtt
    18541 tacccacgga atagctaatt ctaaaaacgc atccgcgcta ttttttgctt cgtcaacgaa
    18601 aggtttcata tctttataaa aatcaaacgg ctttgcttct tcacggttac ttaaatataa
    18661 ttcccaattt ttttcgtttt gaagaagcaa tttttccgta cggtttaaaa gttccattct
    18721 atcactcttt tcttcacatt ttcagatact tcaagcatag cataggacgc aaaatcttgc
    18781 ctaaaattag attattagct aaaatatggt aaaatagacg aaggtacgtt ctatttatga
    18841 ggtagtttca tgccgaaaag agctattttg catttaattg atactatcat tttcattttt
    18901 atttgttata atagatgata gtctaaaatt cagaatagaa attttctgat agaggtgaaa
    18961 aaaatggcta ttggttaccc taacggcaag aagtatgcag cgagtcatga ggttcttcct
    19021 caacaaaaac ggaaagctcc tgtaacttat ggtaagcgtg gtatgtcttt ggaagatgac
    19081 ctaaatgata cgattgcgta ttatttaact cacgaaatag cagtcatcca caaaaaacct
    19141 acccctgtcc aaattgtcag tgtggactac ccaaaaagaa gtagtgccaa aattaaggaa
    19201 gcctacttca aaacaccatc cacaacagat tataatggtg tgtataaagg aaaatacgtt
    19261 gattttgaag caaaagaaac gcaaaataca acttcttttc cgttgagtaa ttttcacgat
    19321 caccaaatga cacacatggc aaacgtctta aaacaagatg gtattgtatt tgtcattatt
    19381 gctttccaaa aactcggaga aactcatttc attccctttg agaaatttta tccgttttgg
    19441 gaacgtatgc aaagtggtgg aagaaaatca gttactatag cagaaataca agatgtatca
    19501 gaccaaattc cttatggtct aaatccaagg cttgacttct tgcaatccat agacaaatta
    19561 tacttctagt caaacctttt ttaaaggaga gagattttta atggcagata aaccgcagac
    19621 aagatctcag tatcgcaata aacaaagtgg tggttctaaa aagaaatccc aaaaacgagg
    19681 aaaacgagta gtagcgaata ttttcaaaac tattttcttt gtgggattat ttttagcttt
    19741 ctttggtatt gcggctggtg caactgtctt ttacgattac gcaaaagatg caccaaaact
    19801 gaccgactcc aagctacgag atccactttc atctaagtta cttgataaag atggaaaagt
    19861 tttcgcagaa gttggaaccg aacggcggga atatattgaa tacaaagata tacctgaaac
    19921 actaaaaaat gcaattctaa caacggaaga tgcgcgtttt tatgaacatg atggcattga
    19981 cccaattcga cttggtggag cagtaattgc caatttgaca gacggttttg gcgcagaagg
    20041 tgcaagtacc ctttcgcaac aaatcatcaa aatgtcctat cttgattaca caaataaaac
    20101 acttgcaaga aaagctcaag aagcatggtt agctcttcaa ttagaagaaa aatatagcaa
    20161 gaatgacatc ttagaaattt atgttaataa agtctatatg tcagaccgtg tccacggcat
    20221 gcaaacagct tccgaacatt acttcggtaa aaatttgaaa gaccttacgt tagctcaaac
    20281 agccctactt gcaggtatgc cacaaagtcc gaataactac aatccttatg aacacccaga
    20341 agcagcaaaa aaacgtcgtg atcaagtttt aacaaatatg tatacacatg ataaaattac
    20401 aaaagaagaa atgaccgaag ctcaaaaaac atctatcact accggacttc gctcgaaaaa
    20461 agatcgtgaa gataaaattt acaaatacga ttcttacgtc acacaagtgt taagtgaaat
    20521 tccaaaagaa tacgatgttt atcgtgatgg tttaactatc catacagcgc ttgaccgtga
    20581 tgcccaagaa tatacggaga aaatgctcaa tacgaacgaa attgttaact tcactgatga
    20641 tgaaatgcaa gccggtatag tgcttcaaga tactaaaact ggacgtgttc aagcaatcgg
    20701 aggcggacgt aaacaaaaag taactcgggg atataactat gcaacccaag taaaacgttc
    20761 tgttgggtct accatgaaac caattgctga ctatggtcct gcttttgaat atttggattg
    20821 gtcgactgcc catattttag aagatgaacc atatacgtat tctggcggaa cccctattaa
    20881 caactgggat ttcgcataca aaggaccaat ttcagtaaga caagcacttt accaatcacg
    20941 taatattcca gccctaaaaa cccttcaagc tgttgggcta gataaatccg aggaatttgt
    21001 taataaactt ggcatcacct atgatgaagg acaaaacgta gaatccaacg ctattggagc
    21061 aaacagttcc aacccaatgc aaatggctgg tgcctatgct gcattcggta acaaaggaat
    21121 ctataacaag ccacacactg ttacaaaaat cgttttatca gatggacaaa cagaaattga
    21181 cacagaacca caaagtactg ttgctatgaa agaatcaact gcttatatgg tttcagatgt
    21241 tctaaaagat gttctttcta tcggaacagg tacatcagca gccgtaccag gcgtacctgc
    21301 tgctggtaaa acaggtacaa cgaatattcc acctgaattc acttcgaagt actactaccc
    21361 tagtggtgct gcccgtgact catggttcgc tggatataca accaattatt cgattgctgt
    21421 atggaccggc tatgatgaca agaaaaaata tgtttcagca agtgaacaaa aaattgcgca
    21481 gcggatgttt agtaaattaa tggctcatgc atctgccggt aaaactactg cagatttcaa
    21541 aatgcctagc aatgttgttt ccgtcccaat tctaaaagga agcaacccaa ttgcacgcgc
    21601 tgctgcaggc actgcaagtg ataaagtaag ttacgaatta ttcttatccg gaaccgctcc
    21661 aaccaaaact gcttctactc cagaagacga gaagaaaaaa gcagaagaag ctgcgaagaa
    21721 gaaaaaagcg gaagaagata aaaagaaaac agatgaagag aagaaaaaag aagaagaggc
    21781 taagaagaaa gcagaagagg aagctaagaa aaaggctgaa gaagaagcca aaaatcttac
    21841 tgcccctgcc ggcttaagag caagttataa tgccggctct aagcaaatca atgtttcttg
    21901 gtctgcggta gatggtgcaa cctatgaagt aacagtcaat ggttctacta caacagtatc
    21961 ttctacttcc gtttcagtaa gcggaggtaa tcctggagac actgtttcca ttaacgtcgt
    22021 cgctgttaaa gacggtaatc gaagccctgc ctcctctact acagttaaaa ttccagatag
    22081 ttaatacaaa aagagcggaa gatgtttaaa catcttccgc tcttttttat gatcttttcg
    22141 caattaattt acgctgttct aacattaatt catttaattg ccgaaaacct aaatacgtat
    22201 tacctcgctt taatacatat tctaaccgct cgtctaaatt gagtggtttt gtctccaacg
    22261 ttttaatttg gtccatcaaa ttatctagct gtactggccg gtgattactc caaaataaaa
    22321 tagataaaaa aataccgagc gcatctctaa ccgttacagg agatggtttt ttatgcactt
    22381 tcaaatcagc ttccatactt tcagccaaat tagtcatatg tttcgccaat ttgcgacaag
    22441 ctcgctctgt ttcatttttc caaggaataa ctccaccacc tttggtaaaa aactgttgtt
    22501 cttgccaaaa aggtagacca ctaacataaa tggattctgg atcatattct tctaaaataa
    22561 catccggtgc tgggaaatca ggatgtgtta attctactgc atatttaaat tcagccatcg
    22621 aatcccctca ctttcgcttg tttttttcct tctctgcata aatagagtaa gggacaggtc
    22681 gggcattctg ggtttcttgc tttacaatga tatcttccaa agaaaatcat ataatgatgt
    22741 gcatcagacc agagttcttt tggtagcttt ctttttaacg tttcttccac ttctacaaca
    22801 gaatctttcc atctacaaat ccctaagcgt ttactaattc gttcgacatg tgtatctact
    22861 gcgattgctg gaataccaaa gccaactgat aaaacaacat tggccgtttt tctacctaca
    22921 cctggaaggc tctcaagttc cgcatgcgtc tttggtactt ccccattaaa ttcgattaga
    22981 attttctcgg ataatccttg aatatttttt gctttattac gatataagcc aatagagcga
    23041 atatcttcca tcaattcttc cagtggaaca gccaaataat cttctggtga gtgatatttt
    23101 tcaaacagcg aggcagtcac gcgatttact aacacatctg tacattgagc ggataagaca
    23161 acagccacca gtaattcaaa cgtattttta tgaactagct cacagtgtgc tgctggaaac
    23221 atttttgcca tttcttctat gcataatacg gtttgtttat tcgataacaa tttgtgtacc
    23281 tcaccctttt cttttttcaa gccagtcgta tagaggaatc gaacctgcgc tttttttcac
    23341 ttccgtttgg ttaattgctt ggcttgtgcg cccattttga tgaaattctt ccgctacacg
    23401 cttggcatct tctattgtct taaccccttg tttcgaccag ttaagcagaa tcctatcaat
    23461 atatcggaaa tttaattttt gcgaaataac agcttctttt aatgcttctt tgattaaatc
    23521 cgggctcgtt ctatcttgct ctacccacgc ggataacatt tctgcttcca ttggagaaag
    23581 cggtcttcca aactctgctt cgaatagagt atataaactg gtttgttttt ctaactcttt
    23641 ttcatgttta ctatctgctt ccttgttttc atataaagcg actagtttac cccagagtgg
    23701 tgccaaatta tattgttcag aaatcattcg tgaattatct tggctttgtt cgatagcaat
    23761 cacacctttt ttcaagagtg agtccatcgt tttaattgtt tcttccagtg gaagcgttgt
    23821 tctattggtt aacatttcca tcgacgggaa aaattctgcc tctgctgcaa aggattgaat
    23881 ttgaagtaat agcactagtt ctacttcgtt taagccaatg gttgcatagt ttttcactag
    23941 cacttgcggt aatgtcactt gcccttcagc catccatttt tcaagaattt ttggattcat
    24001 atttaacacc tcactacaaa attataacat ggttttcgag ggaaaaatat aaaagtactg
    24061 ctaaaatcat gaaatcccgc ggaaaagatt attttcaatt taaagtccac aaaaaaagtg
    24121 aagccagttt gttggcttca ctttttaact tacggatata aacggtttag taaacgtggg
    24181 aacggaatgg tttcacgtac atgttctgtg cccgaaatcc aagcaactgt acgttctaag
    24241 ccaagaccaa aaccggaatg tggaacagag ccataacgag ctaagtcaag gtaccagctg
    24301 taggcttctt gatccaaatc gaagtcttcc attctagctt gaagcgtttc taaatcgtga
    24361 atacgttccg atccaccaat gatttctccg tatccttctg gagcaatcat atcagcgcac
    24421 aacacaactt gatcgttttc tggatcttcc ggcatataaa atggtttaat tgcttttgga
    24481 taatgtgtaa tgaaaactgg tttttcgaag ctgtctgcaa tcgctgtttc atgtggtgcc
    24541 ccgaagtcat ctccccaaac aatatcatca aagcctaatt cgtgtaaacg ttcgattgct
    24601 tctgtataag taatacgcgg gaacggtgca accatttttt ctaaatgact aacatcacga
    24661 ccaaggcgat ctagttctaa gcggcagtta tcaagaactg cttttactag gaatgccacg
    24721 tagttttctt gtacttgtaa gctatcttct aatttgtaaa atgccatttc cggttcaatc
    24781 atccagaatt caattaagtg acggcgagtt tttgatttct cagcacggaa agttggaccg
    24841 aatgagaata ctttaccgaa agccattgct gctgcttcca tgtataattg accactttga
    24901 gatagaaacg catcttcatc aaaatatttc gtatggaaaa gttcggttgt tccttctgga
    24961 gcacttccgg tcaagattgg tggatcgatt tttaggaatc cttctttatt gaaaaactca
    25021 tagctagcgc gtataatttc gttacgaatt ttcataatcg catgttgacg gttagaacgt
    25081 agccataaat gacggtggtc cattaaaaat tccgtgccat gctcttttgg tgtaattgga
    25141 taatcatgtg attcgctaat tacttctaca ccagatacag ccatttcata accaaatggt
    25201 gaacgagtat cttcgttaat tgtacctgtg acatataaac ttgtttcttg ggttaatgct
    25261 ttagcagttg cgaaaatatc atcgccaact tctgctttta cgacaacgcc ttgcataaat
    25321 cctgttccat cacgtaattg taagaaagca attttaccac ttgaacgctt attcgcaagc
    25381 catgctccaa tagttacttc ttttccgaca aattcggatg cttgattgat tgtaattttc
    25441 acttgtctac actccctatt tcataaaact tttgattcga tttatagctt cttggaataa
    25501 gtctggattt gttgcataag aaaggcgtat ataatcaggc attccgaatc ctgagcctgg
    25561 aatgactgcg actttcgctt cttctaaaag agctgctaca aaagcatcta catcctgaaa
    25621 acctttttta tgtgccgctt cttttacttc aataaagaaa taaaaagcgc catctggttt
    25681 tttcggttta aaacctggaa tgctacttag ttctggataa aaacgttcca ttcgttcttc
    25741 aaaagctttg tacatttttt ctggaacttc ttgactacca acatacgctt caagtgcagc
    25801 atactgggca ttagcagttg gattacttgt taaatgatcc gctaacttac tcattccagc
    25861 aatgatttct ttatttgcag ctgcgtaacc aattcgccag cccgtcattg aatatgcttt
    25921 agatacacca ttaataacaa tagttaaatc atacaaacgg tcactcaaac tcgcgataga
    25981 gactaaatca gctttgttac catagtataa tttttcgtat atttcatcag ataaaatgta
    26041 aatctgatgt ttttcagcaa cttcaccaat agcaataagc tcctctttcg tatagcacat
    26101 accagaaggg ttattgggtg aatttaaaac gattgctttt gtttttttcg tgatagcttt
    26161 ttcaaaattt gctgctgaaa ttttgaaatc cgcgtcaaaa ccagtttcta caaaaacagg
    26221 aataccacct gctaatttga cttgttcggg ataagttacc caatatggaa ctggaataat
    26281 gacttcatcg cctggatcta aaatcgtttg aaacgcagag tagagtacat gtttagcacc
    26341 agtacctacg aaaatctggt tcgtttcgta gtttaagaac tgatcttttt ggagcttatc
    26401 aacaatcgct tgttttagct cgatgattcc actagaagga gtatatttgg tgaatccttt
    26461 gttcatggac tcaattgctg catcgataat attctgcggg gtattgaaat ctggttcccc
    26521 agcacctaag ccgataacat caattccttc ttgtttcatt tgttttgctt tagccgtaat
    26581 cgcaagtgtt ggcgacgggg ccactccttt gacacgtttt gataacggta agtccatttt
    26641 attccctcct ccaatttagt tacaagtttt caatctctct gtaccattca cctgtttcaa
    26701 agttaatgtc aaagtagttt agcttgtcat tcttatctaa gtaggcaact tcccaaatag
    26761 gcgtttcttt ttccattcct aaattcacat gtaaaatttt ctttggattc ttttcttttg
    26821 tgactttatc gcgtgcttgt tgttctgtaa tcccatcaga tgcgaattta acatatactt
    26881 tgtcggattt tttctttgga acccaaacaa tgatattctt attcttactg ttcttaccag
    26941 ttaatacgta atacacttct tttggcccat tataaagata aaattgatct gttgttttta
    27001 aatcaacttg gccacttatt cggtctaagg cttctgtttc tgcattggtt actggttttt
    27061 ctgcatatct aaagtacaga aaagctgcta cgacaagcac aataattatg ccgagaataa
    27121 tcgctatcca tttgccaatc ttacgcttag gttttctatt tcgcaaaata atctcgctca
    27181 tttctatttc taaattaccg gaattcctcc ggcgatatgc attttcattt tcgcatagat
    27241 acattatagc aatagcggcc taagatttga agtcatatca ggaaaaattt aaccttcctt
    27301 aaagaattca ctcacttctt ctaataaatc cgcctgtttg cctttcaaga ttggcgcgct
    27361 tgggattgac tctaaaaatg cttttccaaa ttttgtcgta tctactcgat tatcaaaaac
    27421 aaatacgatt ccgcggtcgg attctcttct aattaaccga ccaaaacctt gcttaaatcg
    27481 cagtacagct tcaggtagag aataggtttg gaaagcattc tccccgcgtt ctttgcgaag
    27541 ggatatttgt gcttttgtat aagggtcatc catcggagcg aatggtaatc tcacaataac
    27601 tagacatgac aagtcttctc ctggaatatc aatcccttcc caaaagcttg tcgtaccaag
    27661 caaaatagac ttatcaaaca tttggaattg ttttgtcagt cgtgcggcgc ttcccgctga
    27721 aactccttgc gctagaagga catactcttc taatgatttt tcatttttca tatgataata
    27781 cgttttttgt aacatatcag aagcggtgaa aagaacgagc atccgtccat tcgttttcac
    27841 tgctatgtgg cgaatatatt tcgcaagttc caaggtatat cgctcaattg gtgtgtcttt
    27901 aattgggggc atatcatctg gaatcatcac tcgcgcattt tctttataat caaacggtga
    27961 aggaatgcgt ttttccataa tttgttcttc ttccagaccg agacttttcc gtaaataatc
    28021 aaacttccct tttacggtta aagttgccga agtcatgatg acactttctt ttttagcaaa
    28081 aaaatgtttt ccaagtgtcg gctccacttc catcaagaca gcttttagac gaatgctaga
    28141 aatagaatga tttttgtcag cttgtaaata aatggtcaaa ataggcgact tcttatgcaa
    28201 catttgctcc agttgtttta ccatattctt ccaatcaagt aaaaaagcat acatttcttc
    28261 caaaaaggcg ctctctgcct cacctagttc attttcttct tgtttcccct gttctaacaa
    28321 tgtttccata tttttttcgg actcttttag caaatgtaat actttttcag cagcgtaata
    28381 aaccttgtca ttccaagcat ctttttcgct gttttctact aagacaactt cttgtaaatt
    28441 tttacgcgcg aagtttaact gcattttcag aagaccgaaa aactcttcca ccgcatcact
    28501 taacttcatt gccgcaatat ctaaatcata taaactgtct gcttctggga aagccattgc
    28561 aagccttgtg agaagggaat atttttctaa agagcctagc tgattcaaaa aatattttat
    28621 ttttcggtaa gacagaacaa aacttccttg catacgagca ctatccgcaa aatgatgggc
    28681 ttcatcaatt actgcaaaag catacttagg caatgtttct cttcccgaaa aatggtcatt
    28741 taaaagtagt gcgtgattaa caatgactaa atctgcattt ttggcttgtt tgatgttgaa
    28801 tttatagaaa tcgtgtgcga gccaaggatc atgtttttca gataaaaacc agcctgtgtg
    28861 cttcatccga ttccagaata actccccgcc gctagatagg ttcacttcat caatatcacc
    28921 agtcgttgtt tccgtcagcc atacgagcaa tttaagcttc gtcacaacta catcatattg
    28981 cgtatcgact tcttgaagta actgctcaaa tttaaacaaa ttcaaataat gatcgcgccc
    29041 ttttagtaag ctagctttca ctttgaatcc tgttaatttc gttaagagtg gcacatcttt
    29101 ttcaaacaat tgagcttgaa gcaagttggt gtatgtacta ataactaccg gtaattcagc
    29161 ttgtttcgct tggtaaatag ctggtaaaaa gtaacctaac gatttcccaa tccctgttcc
    29221 cgcttcaatc aaggcatgtt ttcctgattt catcgcttgg aaaaccaaat tcatcatttc
    29281 aaattgacca cttcttgcat aaagtggcgc tccagctttt ttgaatagtg ccattttagc
    29341 ttcgtctgtt tcaggaaatt caagtaaatc tgctctacta taggtgggct tttcgacttc
    29401 ttttttgcga ataactagtc cacgatgttc tacgaatgct ggatcaagtg gcttgttttc
    29461 tcgctctttt cgcatttcaa tttcaaataa gagctctggt aaatagcttt ttagactgcc
    29521 agaaatcgtt gtcatttgac gaatgacagg tagtggtaaa ttttctagct tttctaagag
    29581 aaggagtagt aaatctgctg tcacttccgc atcactatcc gcacggtgcg gtttatcgtg
    29641 cccaagatta aattcatcgg acaagtcttg tagtttataa ctatcgatgc ccggatacat
    29701 aattctagct aattccacag tatcgagttt tttcattttg ccaagagaaa ttcctgcacg
    29761 cgtcatttct cgttctaaaa atgtccagtc aaatgacaca ttatgtgcca caaaaatagt
    29821 atcttctagt aaattcgcga taatcggtgc gacatcttca aacagtggag catttttaac
    29881 gtcttttggg gagattcccg ttaattcttg aataaacgca ggaatcggtt tttctggatt
    29941 taaaaatgtc gtgtatgttt ccagacgttt tcctgattca acaaagcaag cagcgaactg
    30001 gataatccgg tcctctcgtg aagcttgatt tcctgttgtt tctaaatcga cgactatata
    30061 gcgtttctgt ttcatctgct ccacctcttt ccttcactgc ttttattcaa aaataacgat
    30121 gcaaacaaac gagtagcttg agcagaaatc cactcaagct ccccgaactg attataaagt
    30181 cgtatgcgct ttttcttctg gaagaatcat ttcaatatga tttttttcat ctaaaacaac
    30241 tattttgggt tcatgtgttt tcgcttcttc ggcagtaaac attccgtaac tcataataat
    30301 tactacgtcg ccaacttgga cgtgtctagc tgcagctccg tttagacaaa tcacaccact
    30361 tcctggctca cctgggataa tataggtttc aattctagca ccgttattgt tatttacaat
    30421 ttgaactttt tcgtttggaa gcatatccac tgcttctaaa atagcagaat caatcgtaat
    30481 acttccaaca taatttagat tggcttctgt tacagtcgct cggtgaattt tgccattcat
    30541 cattgttcta aacatttttt accgcctctt cacatttatt aattcattat caattaaacg
    30601 agctttcgaa tattttactg ccgctgcaat gattattcct ttggtccagt ctgttactgg
    30661 tgtaaattca ggataggaat agagcgctaa gtaagcaatg ttctcatggg atggttgctc
    30721 atttatttta tctgtcatga cttggactat tttagcctca tttgtttccc cagattcaat
    30781 aagttctcgc cctagttgta aagcttcatg aatcaccggt gcttcttttc gttctttttc
    30841 tgttaaatag acatttcgtg aacttttggc aagtccatct gcttctctaa cagtcgcaat
    30901 gattcgtaaa tttataggga aaaagtagtc ttctactaga cctgaaacaa cggccacttg
    30961 ttgagcatct ttttgaccga aataggcgtt atctgggttc actaaatgaa atagcttcgt
    31021 taaaaccgtt actactccgt caaaatgacc ttcacgatca gcaccatcaa gtacagaaac
    31081 tcgtttgatg acatgtagtt tggttgctag ttcggttgga tagatttctt cgactgtagg
    31141 tacaaataaa atatccacgc cgccttcttc tgcgagcttt gcatcgtgcg cttcatctcg
    31201 aggataagca tcaaagtctt cgttcggacc gaactgggtt ggattaacaa aaacactcat
    31261 aacgacaaaa tctgtttctt ttctcgcatg gctgacaagt gtcatatgtc cttcatgtaa
    31321 aaagcccatc gtcggaacgt aaccaattgt tttattcgct tttttttgct ctaaaatagc
    31381 ttctttaagg tcttgtttat ttcgaataat taacatttgc tattcccttc cataaaggcc
    31441 ttttaagtct tcttcagcca tggtaaagct atgtttcact tctggaaacg tcgctgcttt
    31501 tacttctttt acgtagcttg ctagtgctgg ttcgattctt tcatcaatgt ccgcatacgc
    31561 ttttacaaat ttggcgcgac gactgattcc ataaccgata atatcgtgat aaacgagtac
    31621 ttgtccatct gtttctacgc ctgctccaat accaattgta gggatagaaa gtgctttact
    31681 tactttttca gcgagttgac gtggaattgc ttcaagtacg agtgcaatcg ctccagcagc
    31741 ttctacagct aacgcattat ccattagctc ttgtgcttct tgggcagatt tagcacgtac
    31801 tttatagctt ccagttaagc caacactttg cggggttaag ccaagatgcg cgacaactgg
    31861 agcacctgct tctgttaggc gagcaatttt gttaacgact tctcctgctc cttctaattt
    31921 tacagcatga gcgccacttt cttggataat cttccgtgta ttttggatag tttcatccac
    31981 tgaaccatga tacgtcataa acggcatgtc tgtaacaaca aatgtatctg gtgccccgcg
    32041 cttcacggct tttgtatgat gaatcatatc atccatcgta actggtacag ttgaatcgta
    32101 gcctaatact accattccaa gtgaatcgcc gactaaaatc atatcagctt ctgcttgttc
    32161 tacattctta gcagaaggat agtcatacgc ggttatcatc gtgattttct caccgttttc
    32221 cttcatagca aaaaagtcta ctggtctttt cattttctta gctccttttc gtccctgtta
    32281 aattacttta atcaaggcaa aaaacatatt tttttagtag cattagtatg atccggtaaa
    32341 ggtatcatcc attcattgct accatatgta taataacata aatagatgct tacttaaagt
    32401 atgtaaattg aagagaggcc tactctgaaa cctctccact tactttattc atccaattcg
    32461 ttaatttcgc cggttcatcc gttgctgcat aggtagacgc tacttttcca tcttttaaat
    32521 aaaccatcgt tgggacagaa tcgatgtcca ttttttctaa aagagcaatc atatcatcgc
    32581 gactcttttc ggaggcttta tctgtgttat aataagccat tttttggtct ggttgtcttt
    32641 ttttaagttc tttctttaaa ataggttgaa atgcttggca atcttcacag gtcggacgcc
    32701 caacgtaaac aaagccagtt gttttatcgg ccattttttg cttgaaatct ttggtggaaa
    32761 tggttgttag aaaagaggcg ctttcttttt ctgtttgatt tgctttctct tccgtttctt
    32821 ttttattatc gccgcatgct ccaagtgtaa ggattacggt aattgatgtt aatagtaata
    32881 gtattttttt catctaaaca gctccttcgc atttattgta cttgattttt cccaaaaaag
    32941 aaaaacccga aaaagtgatt ttcacactat gttttcgagt taaaagatat gtttttgggt
    33001 attttattag ggttaaaacg ttcttttcta tagtgtttcg ttatttttca ttatctagca
    33061 aaatatctgc ggaatagatt gaatgtactt caccgagtgc gtcttggagt aagagtacac
    33121 cttcatcaga aatccctttt acttgtccat gaattttgcc ttttgttgtg ctagcagtta
    33181 atttttcgcc aaatggaatg gcttttgttt cccaaagtaa ttttatcggt gcgaatcctt
    33241 tatctagaaa aagctcataa tatttttcta aagaagtgag aatttcttgt agtaaagctt
    33301 ttcttgagac gctttcgcct aattccagtt tcagagaact tgctttgtct ttaatttctt
    33361 ctgggaattc ctgttgattt acattgattc ccataccgat aattactgcg tgaatcgttt
    33421 ctgcctccgc ttgcatttcc gttaaaacac cacagatttt tcgtttacca atgtaaatat
    33481 cattcggcca tttgattttc ggttcgagct ttgtgctatt ttcaatcgct tctgtgattg
    33541 cgagtgaggc gataaacgtg aactggggta ctttttgaat agggatttgt ggttttaaaa
    33601 ttacactcat ccaaatacct tccccttttt tggaactcca agggcgaagc aagcgacctt
    33661 ttccagctgt ttgctcatcg gctacgataa cggttccttc agggctagat tcgatttgct
    33721 gatgggcgat gatttgtgta gagctaaccg attcatggat ttccaaatgc tgaccgataa
    33781 atttggtttc taaaccgagt agtagtgcat ctttcgtgta ctgttctgct gttgctgaca
    33841 aacggtaacc acggtttctg actgcttcga tttcaaatcc ttctttacgg agagcttcca
    33901 tttgcttcca aacggctgtg cgcgagcatc ctagactatc cgcaatttct tgccctgata
    33961 aataagtacc atcactttct gtaaataaag caagtaattt ttctcgatta ttcttcatga
    34021 tagcctagcc accttttaat ctgaattttt tcattgttta tttcattgga aaggacacca
    34081 cattccactt tatcaagcgt ctcttttacc catggacctg cgctttctcc agaccatttt
    34141 aataaatcag ctccagtaat agctaagtct tttttggagt gaattggtaa cgcctcgtat
    34201 gcttgactta ctttatgttg gttgttttct tgccctcgaa taacatttag ttcatttact
    34261 aatgagaaaa ctgccttgcc agcatgataa agttcttctg ttagccatgt ctctttcatg
    34321 tttagcgcgt attgatacgc tttattcact agttgaattg ttttattggg taatttccaa
    34381 gctttaagaa atgcgttaac attgttaggt ttgacagcaa cgacgagtcc aagccaaatc
    34441 gattcttcgg ttgttcgttt ttcccagtcc caactagcaa actcgcttag tgctgatttc
    34501 tcgtctttta agcctggtaa ataagtttcc attttgactt ttaaaagtag ttctatcgca
    34561 cgttttgctg ctttgccttt catcattttt agccattcaa ccgtaattcg ttcaacggaa
    34621 gtatgctgta acaactctat ttggctttct aaagcttttt cggtttcttt atcaagctca
    34681 aagtcaagtt gactcagaaa gcggactgct cgcatcattc taagcgcatc ttcatgaaaa
    34741 cgttcggagg ctttaccaac tgctttgatt tctttatttt gaatcgctag ttgcccagaa
    34801 aacgggtctt gtagcgcaaa atgttcatcc atcgcaatgg cgttcatcgt aaaatcgcga
    34861 cgttttaaat cctcttctag ggagcgaata aaggttacct cgcttgggcg cctgaaatct
    34921 tcatacgtcc cttccgttcg aaaagtggtc acttcataaa attcattatt ttctctaact
    34981 gtaacagtcc catgtgcaat cccagtgtca taacttgtct gaaaaatctc ttttacttct
    35041 tctgggaaag cactagttgc aatatccaca tcggaaatcg ttctatttag caagtaatct
    35101 ctgacagatc cgccaacaaa atacgcttca aaacccgctg tagttaattt ttgcaataca
    35161 ggaagcgctt ttaggaaaac gtcattcatc tgtcatcgct cctttattca tcattccgtc
    35221 ttaagtctcg ccaatctagg aaaccagctc ctaaaccacg aattaaaatt tctgctgtgc
    35281 caatatttgt cgctaaagga atttcgtata catcgcataa tcgaataagc gccgtcacat
    35341 ctggttcgtg aggctgcgca gtgagtggat cccgcaagaa aataactaag tccattttat
    35401 tttctgaaat ccgcgcacca atttgttgat cgccaccaag cgggcctgat ttaaaacgat
    35461 gtaccgttaa gccagttgct tcgataatgc gtaaacctgt cgtcccggtt gcatataatt
    35521 gatgcggttc gagcaaatgt ttatatgcag ttgcaaatcc aaccatcaaa tctttctttt
    35581 catcgtgcgc gattaatgcg atatgcatct cattcaccta tccttagtct aaaatatttt
    35641 ctaagccata aataagtgtt tcaagttctt ttgttttacg aacagaaagt gccactccag
    35701 acataaagga aattcgatca taagagtcat ggcgaattgt taatccttgt ccctctgctc
    35761 caaaaatcac ttcttgatgt gctacaagtc ctggtaaacg cacactatga attcgcatac
    35821 cttcatattc tgcgcctcta gctccttcaa taagttctac ttcatctgca gcaccttgtt
    35881 taacgaattc acgcgtttcc gccatcattt ccgcagtttt aacagccgta ccacttggcg
    35941 cgtctaattt attgtcatgg tgcaactcaa taatttcgac gttcgggaaa tacttagctg
    36001 ctttttgtgc aaattgcatc attaaaacag cgcctacagc aaagtttggc gcaattaacg
    36061 caccgatttt tttcgattct gcaatcgatt ttagttcact aatttgttct ggtgtaaaac
    36121 ctgttgtacc aacgaccgca cgtacgccgt gttctaaaat cgttttcgtg ttactatacc
    36181 ctactttagg ggtcgtaaaa tcaacgacac aatccggttt tatttcttct aacatctcgc
    36241 ttaaattacc aaaaacaggt acatctaacg agctaaattc cactatttca tttatatttt
    36301 tttcttttgg ttcatggtca agtacggcta ctaactctaa atctgcttct cttaaaacag
    36361 ttttgacaac ctcgtgtccc attcttcctt taaatccaga tactgctact ctcattttgc
    36421 tttttcctcc ttttttgtcc aacgatcttt atcgcgttct ttaaattttg ccatgaccgt
    36481 atcgtgtgct ttttccatat caatatcaag tgagttggcc atgcaagtaa gaacaaaaag
    36541 gcaatcaccc agttcctctg ctacagtttt agtaggttca cttgttttct tcggtttttc
    36601 gccataataa tggttaattt ctctggctag ttctccggtt tcttctgtaa ttcgggccat
    36661 catcgctagc ggggaaaagt aaccttcctc gaatccacca atgaaatcat ccacttcttt
    36721 ttgtatttct gccattgttt tcgccatcgg ttttccccct ttatgtggta aactaaaata
    36781 gattttaaga ctaattgtta acttcatttc attataccta aacaaatacg tccaagtcca
    36841 tgatttttta cttacatatt aaataggttt cagggaggaa aaaagttatg ctaaaaacat
    36901 tacgcacgaa aaatatttgc tttattatgc ttggtacggc gatttacgca tttggcttag
    36961 ttaattttaa tatcgccaat aac
//
LOCUS       DABQVC010000003        36293 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.003,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000003 DABQVC010000000
VERSION     DABQVC010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 36293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36293
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.003"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..420)
                     /locus_tag="IBJ56_000076"
     CDS             complement(<1..420)
                     /locus_tag="IBJ56_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HAM3416363.1"
                     /translation="MANQLKVGIIGAGAMGLLYAANFANTSELTLFTRRKEQSDLLNQ
                     KGLSLKDNSELKNIHIQATVITDTKKLSEQQLLIIAVKQYSLKSILPLLQSIPERVPL
                     LFIQNGAAHLDSMPLLGNKRTILLGISEHGAGREDDTT"
     gene            complement(570..743)
                     /gene="rpmF"
                     /locus_tag="IBJ56_000077"
     CDS             complement(570..743)
                     /gene="rpmF"
                     /locus_tag="IBJ56_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HAM3416364.1"
                     /translation="MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHHVCP
                     ECGQYDGKDVANS"
     gene            complement(834..1370)
                     /locus_tag="IBJ56_000078"
     CDS             complement(834..1370)
                     /locus_tag="IBJ56_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HAM3416365.1"
                     /translation="MKWSISQLKKYRDSNFTINEKADLKKFFQENNIDVRDASPVQVT
                     GELIVHPEEVTANLTMKGEWTLPCARTLEDVIYPYEVHATETFVKSKEQVLDESWHVM
                     EQDMVDLTPVVEELLLVEIPMQVFSEDALEMSNLPRGNEWEMKTEEGNLLEQIAKEPK
                     VDPRLAGLANFFDEKKED"
     gene            1500..2672
                     /locus_tag="IBJ56_000079"
     CDS             1500..2672
                     /locus_tag="IBJ56_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HAM3416366.1"
                     /translation="MKATGIVVEYNPFHNGHKLHLNKARELTQADVVIAVMSGSFVQR
                     GEPAILPKWERTRMALAAGVDMVVELPVSFATQHATIFAEEAVRILDAIHVDTLFFGS
                     EHGVAEDFTLAAKKVVENEARFDEAIQLALVDKKTSYARAYTEAFKKLFGQNLLDITK
                     PNNILGFHYALAAQKQNPSISLQTIPREHAGYHDEEANHDQIASATAIRKLILAGKLE
                     EASHYLPASSIAILRNYEGPFLSWTDYWSFLQYRLIQAGSEELEGIRGVSEGIQNRMQ
                     QAATKAQNFSDFIELTKTKRYSNARLQRTALQILLNARSQTSSPYIRILGMNKTGQQY
                     LSLHKKNISLPIITTVSKAPAGLLEEELRATNIYTLAKGLENYQAGDFHIPPILTL"
     gene            2754..4994
                     /locus_tag="IBJ56_000080"
     CDS             2754..4994
                     /locus_tag="IBJ56_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HAM3416367.1"
                     /translation="MVQEYIRLRGARENNLQNISLDIPKRKITIFTGVSGSGKSSIVF
                     ETIATESQRQLNETYSAYLRNFLPKYTQPDADSIENLSTSVIIDQKRLGGNSRSTLGT
                     ITDINSILRLLFSRVGKPSIGTANLFSFNDPAGMCPDCHGVGQKVSVDLVKLLDPNKS
                     LKEGAILFPTFSVDSWYWNSYAYSGFFDVNKKIKDYTDEEYDMLLHGKDIKVFLETPM
                     GSMNATYEGLIPKFNRLYIQKEGEMSASTKKRVDKFTHIAPCTTCEGTRLSAQALSCT
                     INGANIADFTAMQLDELKATIASIDDPIAAPMVKSVTERLQHLIDIGLGYMTLDRQTA
                     SLSGGESQRVKMIRHLNSSLTDLLYIFDEPSIGLHPRDVHRLNELLVKLRDKGNTILV
                     VEHDPDVIKIADHIVDVGPHAGKHGGEIQFVGSYTDLLKSDTLTGKFLNRHLPINSKP
                     RQPKGFLTTEKSSRFNLKDIQANIPKEILTVVTGVAGSGKSTLIHSVFLKEYPDAIVI
                     DQSAAHANIRSNPATYTGIMDPIRKAFGKENDVSPSLFSYNSKGACENCKGLGFTTMD
                     LAFMDSIRTPCEVCHGKRFQDSVLQYKLNGKSISDVLELTVSEALDFFTDKKILKKIE
                     AMEEVGIGYVTLGQALSTLSGGECQRLKLANELHKKGSIYIMDEPTTGLHMSDIEHIL
                     TIIHSLVNKGNTVIVIEHNVDIIRNADWIIDLGPEGGSAGGQIIFEGAPLDLLENKQS
                     LTAKYL"
     gene            complement(5037..6077)
                     /locus_tag="IBJ56_000081"
     CDS             complement(5037..6077)
                     /locus_tag="IBJ56_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HAM3416368.1"
                     /translation="MRKEWKKITAIVLLIIIIAGFFIPVPYYISKPGGTEELAPLVTV
                     DDHPNKKDGSLSLVTIAMGKANIYTYMTAKFLPYHELEKDSDIKYENESDEEYNVRQM
                     QMMNESKNNAIQVAYKAAGQEVKVTYDGVYVLSVKDDVPAADVLHAGDLITEIDGNAF
                     KSSQEFIDYIHSKKVGDTVKINYKHGDKNEQANIKLTAIDKKGTPGIGITLVDDEKIT
                     ADPTVKIDSEKIGGPSAGLMFSLEIYSRFQKNDLTDGKKIAGTGTIDPDGTVGRIGGI
                     DQKVVAADKSGAKVFFAPNDPITDEMKKSDPSIESNYDTAVKTAKDIDSKMKIVPVKT
                     FQDAVDYLEKLQ"
     gene            complement(6096..6578)
                     /gene="coaD"
                     /locus_tag="IBJ56_000082"
     CDS             complement(6096..6578)
                     /gene="coaD"
                     /locus_tag="IBJ56_000082"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HAM3416369.1"
                     /translation="MGDKIAVIPGTFDPITNGHLDIIERAAKIFDVLYVSVLNNSSKK
                     PLFTIEERMEMIRQVTAHLPNVQVESASGLTVDYAATRGATAIVRGLRAVSDFEYEMQ
                     IASMNRTLNAEIETFFVMTNTKYSFLSSSMVKEVAQYQGDISELVPEIVNEQVQAKFK
                     "
     gene            complement(6581..7138)
                     /gene="rsmD"
                     /locus_tag="IBJ56_000083"
     CDS             complement(6581..7138)
                     /gene="rsmD"
                     /locus_tag="IBJ56_000083"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HAM3416370.1"
                     /translation="MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGPFFDGDM
                     VLDLFAGSGGLGIEALSRGAERAVFIDQAALAIKTIRQNLEGCHFTERAEVYRNDAER
                     ALKLLHKNEWKFDLVFLDPPYKKQQLEKLLVTLEKLELVNENGRIICEHDKEAIMPDT
                     IGKFEKIKSVSYGITVLSIFEFQEA"
     gene            complement(7235..7516)
                     /locus_tag="IBJ56_000084"
     CDS             complement(7235..7516)
                     /locus_tag="IBJ56_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbG family protein"
                     /protein_id="HAM3416371.1"
                     /translation="MENDRQAIVVWMNHLKQVRSLKRFGNVHYVSRKLKYAVLYCDMA
                     EVEDISNKVSRFHYVKRVEMSFRPFLKTEYESKKEMMYEHKNEDVQISI"
     gene            complement(7547..7996)
                     /locus_tag="IBJ56_000085"
     CDS             complement(7547..7996)
                     /locus_tag="IBJ56_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF family regulator"
                     /protein_id="HAM3416372.1"
                     /translation="MLATMENMALLDLSDELASMILNSEEAQNYKLAKEALLNDATSQ
                     KNIRQFIRIKEQYEEVQRFGRYHPDYKEVTRKTRAYKREVDMDQNVAAFRRAEMDLQS
                     LLDEISLLLASAVSENIKVPTGNPFFETKSACSTGGCGSGGGCGCSA"
     gene            complement(8044..9099)
                     /locus_tag="IBJ56_000086"
     CDS             complement(8044..9099)
                     /locus_tag="IBJ56_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HAM3416373.1"
                     /translation="MKFIMRVAVLLIICLFIGYNTDLFFSKSVEKNTAEDTATKSNFP
                     DNKKTTNENPKQVQDSSSLARFINKNVSELKKEFGDPVRVDKTAYGYDNYIYSQPGTS
                     YMQVGVTKNIVQTIYALGQDLNVMPYTIGMSTEKVFTDANLQSEISFNYKDSYYKFEL
                     SEEDLNARPIVNIGSGVYAQLNFDKFKSKLISVRYLNKLSFVKMRPYELSYQGEIYEE
                     KLTPADWNAIDDASSKQVLEITNVIRDRYGIEEVAWDESVAKVAYGHSVDMKKNDYFD
                     HTSPTQGDLSKRLSKGDVKYTKAGENIAYNYVDSAAAVEGWLNSKGHRENLLDGSYTY
                     MGAGTYRKYYTQNFIIK"
     gene            complement(9247..10152)
                     /locus_tag="IBJ56_000087"
     CDS             complement(9247..10152)
                     /locus_tag="IBJ56_000087"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HAM3416374.1"
                     /translation="MNQIEKTGELSASRFTVRDFTELVKIGIVNSNTITAFTGMWLAF
                     QLNGISFIQNVDVIFFTIVGSALIVAASGAFNNVIDRDIDGIMERTKNRPTMTGKISG
                     KRALMVALVLGVVGTIMLFMTTWQAGVLGVIGVFLYVVVYSLYAKRKLVSNTVIGSFS
                     GAVPPLIGWFAVEPSFSIVPIMLFLVMFCWQPPHFYAIAIKRKEEYAAAGIPMLPVVK
                     GIERTKKSMFFWVILLTILPFFMFELGIVYVVLATLLNIGWLALSIYGFKMEDSIKWA
                     KWMFVYSLNYMTILFVAMVVISIFL"
     gene            10388..11305
                     /locus_tag="IBJ56_000088"
     CDS             10388..11305
                     /locus_tag="IBJ56_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme A synthase"
                     /protein_id="HAM3416375.1"
                     /translation="MKKFLKVWSVLTIICMTVVVFGGALVTKTGSADGCGNSWPLCNG
                     QLVRLTDVTPEKLIEFMHRMTTGISSIFVIVLAICAWIYMKNRRETKPLAIIAVLFLI
                     IQALMGMAAVVWGQNPYIMALHFGISIICYASIVLLALMIFEVDRKFDARNLVMGTKL
                     RINIYALTIYTYLAVYTGALVRHEKASMAVPVWPFENGHFIMPTSVQDYVQYFHRLAA
                     FILIVWLLYVTWLVFRDYRRYRVLTFSMVLSLVFIALQAVTGALSVYTGVNLYIALAH
                     SLIITMLFALLCYLCLLASRSKSNRLRIK"
     gene            11413..12156
                     /locus_tag="IBJ56_000089"
     CDS             11413..12156
                     /locus_tag="IBJ56_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HAM3416376.1"
                     /translation="MDKTKRKMIYETFMLILIVLSLALLPYRNSFTFILNWIIWVIFT
                     LDYLVRLYRADNKWHYVKTHPFQLIAIIPFYGGFRAARIVSFVHLLSITAMGRRYIVP
                     IYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIV
                     PVTPIGRILASIMMLFGIAFIGMITSTITNFFRAKKATTSSTQRASKITQLIADTPDL
                     TKEEIAVVEQFLALRKKELADENIKSDSE"
     gene            complement(12162..12803)
                     /locus_tag="IBJ56_000090"
     CDS             complement(12162..12803)
                     /locus_tag="IBJ56_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HAM3416377.1"
                     /translation="MERKIMHLAVGKPKELNLSNNKRMMTGIEKKLVQSASLTTTGFE
                     NDAPHNLKYHGGPDRTVCIYPYEHYAKWAAMFGEELQVTAFGENLITTNMLESSVQIG
                     DKFQIGETVIQITEARNPCSTIEKFNGIPNLYKAIHKTGLTGYLCRTITPGIIHATDE
                     IKQIHQESHGVTVAFCHDKVLHKNGTKEDLERILAVEALSERYRNQVEKQIKK"
     gene            complement(12822..13439)
                     /locus_tag="IBJ56_000091"
     CDS             complement(12822..13439)
                     /locus_tag="IBJ56_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1775 domain-containing protein"
                     /protein_id="HAM3416378.1"
                     /translation="MKKIISSIVVLLAVFIIPFQASAHVSVLPSESTVDSWETYTMKV
                     PSEKDVASKKIVLKVEKGVSFESYEPVPGWTTTVDKKNGTVTWQTEGNGIEKGQFQRF
                     SFIAKNPSEEGEIAWNAYQYYEDGSIVEWVGAEDSETPHATTKIVKESSKSATGSHGE
                     VVAGAENTAGDTSSTGDNTILLWTAVAISVIALITGILAILSRKK"
     gene            complement(13452..15077)
                     /locus_tag="IBJ56_000092"
     CDS             complement(13452..15077)
                     /locus_tag="IBJ56_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein"
                     /protein_id="HAM3416379.1"
                     /translation="MKLLKRVSFFLIILYLLIVPVQHVSAHAYLENSNPADQSHIQTA
                     PEKVTLVFNEEIEADFPLIEVKNSSGKQVETGKTTVSKKNNHMVEASLPTDLKADVYS
                     VSWRVVSADGHAVTGIISFKLGNTKATFQAAEVPSSGADLQISSIQKAVLYIGFSLFI
                     GVLLFGLGLYPRKEQITEKISGRLKKVTWIALALLGVALFMQLFIQTSITTGVSISES
                     FGPSKLAAFLTTKTGYIWISELIVWLLLAIFTIMMFFKKKQWSWFALLTESALIGYLI
                     FAKAQNGHAAASADKIVSISADMLHMIAASVWVGGILVLLFVLPRTGKAREVWSRFAI
                     VAIIAVASILVSGLLMAVMNIGQMANLFTTNYGKILLFKIGLFLLMALLGLGHYIYIK
                     LKNQRLPFKTILMELIIGTIILVVASVLTNVQTPPPPAPKAFDETIAAEGEKAKINLR
                     VEPATVGQNQFIITFTSADGSAKTDFEQVTITTKSTKTDEKSTFQAKLANDTQYFAEG
                     LYINQTGKWEITVHGLTKDFTDINQTFTTNITQ"
     gene            15217..15408
                     /locus_tag="IBJ56_000093"
     CDS             15217..15408
                     /locus_tag="IBJ56_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416380.1"
                     /translation="MLRYIELFFMFAFVTLITMWIQALLAKWKPTILRSFWLRTLTFI
                     IIGYALMAPTLYIGSLLLK"
     gene            15470..15856
                     /gene="mscL"
                     /locus_tag="IBJ56_000094"
     CDS             15470..15856
                     /gene="mscL"
                     /locus_tag="IBJ56_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HAM3416381.1"
                     /translation="MKKMLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVDNIIMP
                     LVGVLLGGLDFTDLSFKVGKSVIQYGAFIQSIVDFVIIAFAIFIFVKVLTSFIKKKEQ
                     TVEETPVPPTEEYLKEIRDLLKEQQK"
     gene            complement(15991..16383)
                     /locus_tag="IBJ56_000095"
     CDS             complement(15991..16383)
                     /locus_tag="IBJ56_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416382.1"
                     /translation="MNWTRISSIVIVGFTAIGAIYGGLSMVFMPSGGLLSLSTGLLDG
                     SPFVDYLVPGIFLFVFVGLFHLAALIYLLKKLPRTKEVMFAAAAVLAVWMIVQLLIIG
                     YVFILQIIFLVVAAVEMFLAIQLKKQQR"
     gene            complement(16428..16637)
                     /locus_tag="IBJ56_000096"
     CDS             complement(16428..16637)
                     /locus_tag="IBJ56_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416383.1"
                     /translation="MRENSIIGRIIAFCAICFAFFNPKTVTYWLGVRAESGPAWYLTT
                     VVACGIAVFVLIDLIKKIKRRKTAE"
     gene            complement(16788..17765)
                     /locus_tag="IBJ56_000097"
     CDS             complement(16788..17765)
                     /locus_tag="IBJ56_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choloylglycine hydrolase family protein"
                     /protein_id="HAM3416384.1"
                     /translation="MCTSITYTTKDHYFGRNFDYELSYKEVVVVTPKNYPFHFRKVED
                     IEKHYALIGIAAVMENYPLYYDATNEKGLSMAGLNFSGNADYKDFAEGKDNVTPFEFI
                     PWILGQCATVKEARRLLQRINLVNISFSENLPLSPLHWLMADQNESIVVECVKDGLHI
                     YDNPVGVLTNNPTFDYQLFNLNNYRVLSSETPENNFSNEIDLDAYSRGMGGIGLPGDL
                     SSMSRFVKATFTKLNSVSGDSESESIGQFFHILGSVEQQKGLCDVGGEKYEHTIYSSC
                     CNIDKGIYYYRTYGNSQITGVDMHQEDLESKELAIYPLVNEQQLNIVNK"
     gene            complement(18020..19648)
                     /gene="groL"
                     /locus_tag="IBJ56_000098"
     CDS             complement(18020..19648)
                     /gene="groL"
                     /locus_tag="IBJ56_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020861279.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HAM3416385.1"
                     /translation="MAKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFG
                     SPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEG
                     LKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEVGKLI
                     AEAMERVGNDGVITIEESKGFATELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYI
                     LITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKA
                     PGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGA
                     GDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVKVGAATETELKERKL
                     RIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAALEAEGDVETGINIVLRSLEEPVRQ
                     IAHNAGLEGSVIVERLKHEAVGVGFNAANGEWVNMIDAGIVDPTKVTRSALQNASSVA
                     ALLLTTEAVVADKPDENGPAAVPDMGMGGMGGMM"
     gene            complement(19682..19966)
                     /locus_tag="IBJ56_000099"
     CDS             complement(19682..19966)
                     /locus_tag="IBJ56_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HAM3416386.1"
                     /translation="MLKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGS
                     GRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAITK"
     gene            20201..20887
                     /locus_tag="IBJ56_000100"
     CDS             20201..20887
                     /locus_tag="IBJ56_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HAM3416387.1"
                     /translation="MAKRYITIVLVYLLLLFSASVGIPIVQHILLSTTSLSAESTASY
                     GMVIWSIFSNLLSLAIIIPMLYRKPKENKIEIGEKTKPLLSIVWIVGGVIGLYVAQII
                     CSVIITMISGELSNSANTELLVDLTKAAPIFLIFISILGPILEELVFRKVIFGGLSNV
                     TNIHVAAVISSLFFGLLHGDISFLLTYFVIGLILCFLYTKTKRIVVSMGAHILMNTIV
                     LLLSLGIIGG"
     gene            20889..21086
                     /locus_tag="IBJ56_000101"
     CDS             20889..21086
                     /locus_tag="IBJ56_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4305 domain-containing protein"
                     /protein_id="HAM3416388.1"
                     /translation="MKNSLIKQSFLYFALGLVFVYFVVVRVADYGYDVLACILIIMTL
                     MDFGIGIGLIITGLKRRKKNL"
     gene            complement(21120..21767)
                     /locus_tag="IBJ56_000102"
     CDS             complement(21120..21767)
                     /locus_tag="IBJ56_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HAM3416389.1"
                     /translation="MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVK
                     VDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLH
                     YNFMKNNNIKIVAAFDVDPAKVGSVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEA
                     QVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE"
     gene            22077..24029
                     /locus_tag="IBJ56_000103"
     CDS             22077..24029
                     /locus_tag="IBJ56_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HAM3416390.1"
                     /translation="MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKST
                     LLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLESSKTIWDEMLSVFDSLRRMEADLR
                     KMELRLGEPELYNDPEKYQALMTDYDTLQHTFKESGGYTYEAEIRSVLNGLRFYPEDY
                     EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLI
                     VSHDRYFLDKVVNQVYEISRTKIDHYKGNYSSFVNQKQAKLEQMWKEFDKQQKQIAKL
                     EDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKAAHFGFQFEKQTGKDVLMVD
                     QLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGA
                     GVKIGYYDQEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLS
                     GGEKARLALAKLTLLEANVLILDEPTNHLDIESKEVLEAALIDFEGTILFVSHDRYFI
                     NRIASKIVELAPEKATVFLGDYDYYQEKLAEEKELARLDAEDRRKKGEQVEATSSVRK
                     LNYQEEKEQQKLLRQRKRKLEEVEKSMEATDEKIAELELQLTNPEVFQDHEKALEITQ
                     ELDAVKADGEKLMEEWEQISEELESM"
     gene            24054..25013
                     /locus_tag="IBJ56_000104"
     CDS             24054..25013
                     /locus_tag="IBJ56_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3416391.1"
                     /translation="MKKILIISSSIIVGLLVIITICASFYLYSYALARDNSSMNDTAT
                     TDETTATAKLAKKNREENVAWMEKQNLTQWTETSADDLKLVATYLAADKPSNTTIILA
                     HGYRGKSGKVEMAGLARMYHEKFGYNVLMPDARAHGKSEGENIGFGWPERKDYVQWID
                     QVIDKNGTDTQIALHGVSMGSSTVLMTSGEKLPKQVKSIIADCGYTSMDAELSYQLKA
                     MFHLPKFPIIPTASLINKFKEGFFFSEASAVDAVAKTDVPIFYIHGDADAFVPTNMVD
                     ELYKATNSYKEKWIVKGAEHGQAFTVDPKTYEEKVRQFLNKTM"
     gene            complement(25558..26580)
                     /gene="tsaD"
                     /locus_tag="IBJ56_000105"
     CDS             complement(25558..26580)
                     /gene="tsaD"
                     /locus_tag="IBJ56_000105"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HAM3416392.1"
                     /translation="MKKNTLILGIESSCDETAASVVKNGNEIISSVVASQIESHKRFG
                     GVVPEIASRHHVEQITLVIEEALKQANVTMDDLDGIAVTEGPGLVGALLIGVNAAKTL
                     AFMHNLPLVGVHHIAGHIYANRFETEFKFPLLSLVVSGGHTELVLMKADNEFEIIGET
                     RDDAAGEAYDKVARTLGLAYPGGVQIDKLAKDGEDTFHFPRAMMDEGSFDFSFSGLKS
                     SFINTLHNLRQRGEEPNPNDMAASFQASVVDVLVSKTIRAAKQYDVKQLLLAGGVAAN
                     QGLRERLIQEVKLELPETELIIPPLALCGDNAAMIAAAGTVSFLQGKRSGFDMNANPG
                     LLLEDI"
     gene            complement(26577..27032)
                     /gene="rimI"
                     /locus_tag="IBJ56_000106"
     CDS             complement(26577..27032)
                     /gene="rimI"
                     /locus_tag="IBJ56_000106"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HAM3416393.1"
                     /translation="MSLDEALLFREATVTDLKSIMNVENAAFTVPWTEAAFRNEFIIN
                     QYAYYLLAIYKEQVVGYAGVWLVLDEGHITNIAIHPDYQGNHYGEALLREMIRVAKER
                     GVVRMTLEVRVSNDVAQGLYKKLGFQDGAIRKNYYPDTKEDALVMWVDL"
     gene            complement(27029..27721)
                     /gene="tsaB"
                     /locus_tag="IBJ56_000107"
     CDS             complement(27029..27721)
                     /gene="tsaB"
                     /locus_tag="IBJ56_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HAM3416394.1"
                     /translation="MILGMDTSSDTMAIALFNEGVVIGEYTTNLKKNHSVRLLPAIAV
                     LMEECGVKPTDLEKIAVAKGPGSYTGLRIGVTVAKTMAWDAGIPIVGISSLALLAENG
                     LYFPGKVVALMDARRSNVYAGVYQASEGEMQSVIADGHIALTELLEQFLSSEEPILFV
                     GTLTEQICVTVTEVLGERAVFAQADYTYSRASSLVKLAENLDGEPADNFVPDYLKLAE
                     AESKWLESRGSE"
     gene            complement(27718..28179)
                     /gene="tsaE"
                     /locus_tag="IBJ56_000108"
     CDS             complement(27718..28179)
                     /gene="tsaE"
                     /locus_tag="IBJ56_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HAM3416395.1"
                     /translation="MEFELIMTSERETRLRAKQLGEQLTAGDVILLEGDLGAGKTTFT
                     KGLGEGLLIPQMIKSPTFTIIREYKKGRLPLYHMDVYRLEDASADELGLEEYFYGAGV
                     SVVEWAQFVREDLPEEYLEIQLFHIDENTRKLVVKPVGERYEQLAMEVFGK"
     gene            complement(28284..29429)
                     /locus_tag="IBJ56_000109"
     CDS             complement(28284..29429)
                     /locus_tag="IBJ56_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416396.1"
                     /translation="MMKKGILLSILLALVLVISACGESAEEKAAKTPQGKFVQTMKNG
                     MNVPDQSTYTTSFAVNDINVSSTDPSAQTMGILKDIKLSVTTSTDKKANKSEAKFNVT
                     STNNLLPISMDLDFLVDSKTGNAYIPLKTIVEPDASLLSYLDQATGGMWSKINTDYPD
                     LKNKYLSTEELTSSLTDQPEAKTAVDTKEIEAATKDLNKKAIKLVDTYFTGLEKDRFK
                     EADDGTVSVTIKNADIANLMNQVAKLMDDEKVKADLKVIAESQGSDAVTDFDSTYTEM
                     KSSLTDAAKELKENKTYLINNKLTVKSGKENSLDTLTLQTKIEDKSDASAPESISFTV
                     KTKAEEFVPIEDFPTKDEVISSEELNKIITDVTAKMYGGMDISGTNY"
     gene            complement(29563..29943)
                     /locus_tag="IBJ56_000110"
     CDS             complement(29563..29943)
                     /locus_tag="IBJ56_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416397.1"
                     /translation="MTGFKKVILPVLLVVLFLAGCNQAEVPALVLDGTVTDTSLLENN
                     NELTVNGTLTWSGEKNNYASEVLITVSSNTAVTNATTGKAMKLADIKEEDTVRAVFPQ
                     GSNITSPAPGKVSENATSLKVTPK"
     gene            complement(30038..30394)
                     /gene="crcB"
                     /locus_tag="IBJ56_000111"
     CDS             complement(30038..30394)
                     /gene="crcB"
                     /locus_tag="IBJ56_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HAM3416398.1"
                     /translation="MLVNFVLVGFGAALGAMLRYGISVLVKSKWKTNFPFATFFINIT
                     GSFLLGFLVSSALGPVWQLFLGTGFMGGYTTFSTFKVESMELKWKTNYRVLFSYLGCT
                     YVFGLIAAFLGLMLGV"
     gene            complement(30384..30773)
                     /gene="crcB"
                     /locus_tag="IBJ56_000112"
     CDS             complement(30384..30773)
                     /gene="crcB"
                     /locus_tag="IBJ56_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HAM3416399.1"
                     /translation="MYFLYVGVFGALGGMCRYAMNLWLGGGDFPSATLAVNLIGCFLL
                     AFLMQFLAEKSRISLVILNGIGTGFIGAFTTFSAFSVDTIQLVQSGAWLFAVSYVLAS
                     FIGGLIMVKFGRMLSNKLLNRGEHRVS"
     gene            complement(30879..31505)
                     /locus_tag="IBJ56_000113"
     CDS             complement(30879..31505)
                     /locus_tag="IBJ56_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAM3416400.1"
                     /translation="MTEKKIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPDGE
                     AYQKAVQSLYAIAYTIKMSKMGETRLDGYTDFVVPPLEGFWWSEERFDLKDRDAWLWT
                     SILRQPDFVTEEVLEWAKEVAKKKKPDLDTSHVKLVRFEEGECVQMMHIGPFSEEVKT
                     VAEMHQFMETEGLHNDTGAVRKHHEIYLSDPRKVDPEKMKTILRLPVS"
     gene            complement(31502..32395)
                     /locus_tag="IBJ56_000114"
     CDS             complement(31502..32395)
                     /locus_tag="IBJ56_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HAM3416401.1"
                     /translation="MDVTQLKMLHNAKVISEINKGFSVDRKYQVDETYLVRVFPIDLL
                     QEREQEFKIIQALDSQTPFVPKAYDFGFIEREGYMIISYLRGEDAEIGMTRLSHSEQL
                     KAGFSAGEILREVHKIPLAIPKMNWLDFQTVKFERKVKELKELEITAFFLTDTEKFVN
                     ENIARLKNRPICLQHGDFHPANIILNNKKFVGLIDFNRLEFGDPLFDLAKIGFFTTEV
                     SIPFARGNILGYIDKEEVTDFWNLYALYTAMHITSAVNWAAKNESRNFKKLMDYAAKT
                     VASHDNFQRIVPNWMNEEEFK"
     gene            32527..32610
                     /locus_tag="IBJ56_000115"
     tRNA            32527..32610
                     /locus_tag="IBJ56_000115"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32561..32563,aa:Leu,seq:gag)
     gene            complement(32663..34351)
                     /locus_tag="IBJ56_000116"
     CDS             complement(32663..34351)
                     /locus_tag="IBJ56_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3416402.1"
                     /translation="MQKKLIGSLFILIVLLIIGSTSEKVQASPTSSNGWQLKWAIKNN
                     DFEDVDIEDYGVDAGTTNVWQVNQKGVEAWGTTNPTGNIEVWQNGNGYNVPAFSGNNF
                     IELNSDGIGPVYQDIRTIPGSNLTWKFSHRGRMGVDTADLLIGSPESQTEVSRVSDGE
                     TWGSFEGNYIVPEGQTITRLTFNPISTASGSLTSGNFLDDIQLYINVNGAKIGDVVWY
                     DFNGDGIQQDSEEPAPFVKVDLLTKDGVFKESATTNNIGSYLFTDVLPGDYQVKFTLP
                     NNDFIFSKANQGNDTTLNSKPDKTGIASVNVPNLKSENFDMDAGITTNGKVEIQKFSG
                     DKALSGAVYAIKDNSQSEVAKITTGQNGTGTAEGLSPGKYTATEVTAPLGYQKNPTPK
                     TFTITYGDTNPVKLTFQNVEKTGSITIFKQDEANKKGLANAVFDVKSTDGTTLKKVTT
                     NSKGYALAENLQPGTYVITEATAPPGFEKSTKEIRVTIPFNPQKTINITFSDNKIMVP
                     KKPTPTKGSTVVKVSGETTKITALPQTGDSSNSSTIFIGLLIVVVSGLFVYRRY"
     gene            complement(34448..35719)
                     /locus_tag="IBJ56_000117"
     CDS             complement(34448..35719)
                     /locus_tag="IBJ56_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3416403.1"
                     /translation="MNLIGLRIKNIRKEKQLTLKDVAQGIISVPYLANIENGIKVASL
                     ETLIHIARRLEIPEEVLLMSEDEENRALLKELDEIFKLLVCSNPKEIESRLKKIAENV
                     ELQHESPAVELSFYCLQVAFYYKTWKFSRAEEVEAKYLKNAEKRVENAFPPQLLSYYY
                     YGQAVKHSHATCNYQLAVEYWEKCVALTDNKNFLTVFHVCICINYICQSIYEPALGHI
                     QQAWDLIKDEEQERFVSILYFYGYIYFQIGFIGEAKYRFKQAQKYFSKYPEAKKIYYF
                     VVQLKMAEIENIEGNETLFHEKITCLYKEIMAYKTTNISFNNNDYLVITELMVIFAEK
                     GFVEEATSLMGLMNTVVERVQELNYFMEYTEILLLYQQDEQVSYEKKMIQLLKKINAS
                     NDPALIERVKKHASKHFAKSTKYKMAYDILS"
BASE COUNT        10608 a         7535 c         6328 g        11822 t
ORIGIN      
        1 tgttgtatca tcttcccgcc ccgccccgtg ttcgctaata cctagcaaaa tagttcgttt
       61 attaccgagt agcggcatgc tatctaaatg cgccgctcca ttttggatga atagtaacgg
      121 cactcgttca ggtatcgact gtagcagtgg caaaatgctt tttagtgagt attgtttaac
      181 tgcgataatt aataattgtt gttctgataa ctttttagta tctgttatta ctgtggcttg
      241 tatatgtata ttttttaatt cggaattatc ttttaaagaa agaccttttt gatttaataa
      301 atcgctttgt tcttttctcc gcgtaaaaag agtgagctcg gatgtattgg caaaatttgc
      361 tgcgtataaa agccccatcg ctcctgctcc aataattcct acttttagtt ggttcgccat
      421 ttagttcagc tccatattga ttaatgcttt tattttatca gaagtagcat tcttttgcac
      481 ttttgtgcgc aaacaaaaac ctcgaaagac ccatggcgtc tttcgaggtt cgtcttcaac
      541 aagtgaaacg tcacttgttt ttagcaatat tagctgtttg ctacatcttt gccatcatat
      601 tgtccacatt ctgggcatac gtgatgggaa agtctgtatt cgccgcaatt cgagcattcg
      661 ttcatgcccg gaagttgaag tttaacgtgt gtacgacgct tacgcttttt ggcttttgaa
      721 gttcttctaa aaggtactgc catttcctta cacctccttg acgataacta agtacttgta
      781 tcgttaatct aagaaaaata aattccttaa tatattccag cttcacgggg agtttagtct
      841 tcttttttct catcgaaaaa attggctaat cccgcaagac gaggatccac ttttggttct
      901 tttgctattt gttctagtag gttaccttct tctgttttca tttcccattc attgcctcgt
      961 ggaaggttac tcatttcgag tgcgtcttca ctgaaaactt gcatcggaat ttcgactagt
     1021 aaaagttctt ctactacagg ggttaaatcg accatatcct gttccatcac atgccaagat
     1081 tcatctagaa cttgttcttt ggatttcaca aaggtttccg tcgcatgcac ttcataagga
     1141 taaataacat cctcaagtgt acgagcacat ggaagtgtcc actcgccttt catagtcagg
     1201 ttagcggtaa cttcttctgg gtgtacaatt agttccccag ttacttgtac ggggcttgca
     1261 tcacgaacgt ctatattgtt ctcttgaaag aactttttta ggtcagcttt ttcattaatc
     1321 gtgaagttgc tgtcacgata tttttttaat tgactgatag accatttcat cctacatcac
     1381 tccaagcgca acacaaaata ttatagcttt tttaaaggct tttgtcaatg ctttttcggg
     1441 gagtaaaacc gctgccttca ttttatgcta aaatagatta tctaaaggag ggaaccgaaa
     1501 tgaaagcaac tggaattgtg gtggaatata acccttttca taatgggcat aaactacatt
     1561 taaataaagc gcgcgagtta actcaagcag atgtggtgat tgcggtaatg agtggctcgt
     1621 ttgtacaacg aggcgagcca gcgattttgc caaaatggga acgtactagg atggctctcg
     1681 ctgctggcgt tgacatggtg gttgaactcc ctgtctcatt cgcgacacaa catgcgacga
     1741 ttttcgcaga agaagcagtt cgtattttag atgccattca tgtggatacg ctgttttttg
     1801 gcagtgaaca tggagttgcg gaagatttta cattagctgc gaaaaaagta gtcgaaaacg
     1861 aagcccgttt tgatgaagcg attcagctgg cgttagttga taagaaaact tcttatgcta
     1921 gagcttatac agaagctttt aaaaagttgt tcggccagaa cttgctggat atcacgaaac
     1981 ctaataacat tctcggtttc cactacgccc ttgctgccca gaaacaaaac ccgtccattt
     2041 ctcttcaaac cattcctcgt gaacatgcag gataccatga cgaggaagca aaccatgacc
     2101 aaatcgcaag cgcgaccgcg attcgaaaat taatacttgc tgggaagtta gaagaagcta
     2161 gccactatct ccctgcttct tctatagcta ttttacgcaa ttatgagggg ccatttttat
     2221 cgtggacaga ttattggtca ttcctgcaat atcggttaat tcaagcaggc tcagaagaac
     2281 tggaaggaat tcgcggtgtt agtgaaggaa ttcaaaaccg gatgcagcaa gcagcgacta
     2341 aagcgcaaaa cttctctgat tttatagaat taaccaaaac aaagcgatac agtaatgcgc
     2401 gattacaacg aacggcttta caaattttat taaatgcgag gagtcaaact agctcccctt
     2461 acatccgaat actcggcatg aataaaacgg ggcaacaata tctatcgctt cataagaaaa
     2521 atatttctct ccctattatc acgacggttt ccaaagcacc agctgggctt ttagaagaag
     2581 aattacgtgc gacaaacatt tatacgctgg caaaaggact ggaaaattat caggctggcg
     2641 actttcatat tccaccaatt ttaaccttgt aatctttaca aggtttttgg ttgactttta
     2701 tggggctatt ttgctaagat gtttgtccga ctcaaaaaac aggaggtatg tgtatggtac
     2761 aagaatatat tcgattaaga ggagcgcgtg aaaacaatct ccaaaatatt tccctagata
     2821 tccccaaacg aaaaatcact atttttactg gtgtatctgg ttccgggaaa tcttctattg
     2881 tatttgaaac tattgccacg gaatcgcaaa gacagttaaa cgaaacatac agcgcctatc
     2941 ttcgtaattt ccttccgaag tatacgcagc cggacgcaga ttcaattgaa aacctctcca
     3001 cctctgttat tattgatcaa aaacgacttg gcggtaattc ccgctccacc cttggtacca
     3061 tcacggatat taattcgatt ttgcgattac ttttctcgcg tgtcggcaag cctagtatcg
     3121 ggacagcaaa tttattttct tttaacgacc ctgctggtat gtgccctgat tgccatggtg
     3181 ttggacaaaa agtttcggtt gatttagtca aattacttga tccaaataaa tcgctcaaag
     3241 aaggcgccat cttatttccg acgttttcgg tagattcatg gtactggaat tcctatgctt
     3301 attccggctt ttttgatgtg aataaaaaaa taaaagatta tactgacgaa gaatacgata
     3361 tgttgttaca tgggaaagat attaaagttt tcctagaaac acccatggga agcatgaacg
     3421 ctacatatga agggttgatt ccaaaattca atcgtttgta tattcaaaaa gaaggcgaaa
     3481 tgtccgcctc tactaaaaaa cgtgtcgata aattcaccca tattgcgcct tgtacaactt
     3541 gcgaaggcac gagactctcc gcgcaagcat tatcttgtac aataaatggt gcaaatatcg
     3601 ccgacttcac agcgatgcaa ttagatgaat taaaagcaac gattgcgagt attgatgacc
     3661 ctatcgctgc tccaatggtc aaaagtgtca cagagcgatt gcaacatttg attgatattg
     3721 gtcttggtta tatgacactt gaccgccaaa ctgcttctct ttctggtggt gaatcgcaac
     3781 gtgtcaaaat gattcgtcat ttgaatagca gcttgactga tctgctttat attttcgatg
     3841 aaccaagtat cggtcttcat ccacgagatg ttcatcgact caatgaatta ctcgtgaaat
     3901 tgcgcgacaa aggaaatacg attctcgtgg tggaacatga cccagatgtg atcaaaattg
     3961 ccgaccatat tgtcgatgtc ggtccgcacg caggaaaaca tggcggtgag attcagtttg
     4021 tcggaagtta caccgatttg ctgaaatcag acacactaac tggcaagttc ctcaatcgcc
     4081 atttaccaat taatagcaaa ccgagacaac caaaaggctt tttaacaact gaaaaaagta
     4141 gtcgctttaa cctaaaagat attcaggcca acattccaaa agaaattctt actgtagtaa
     4201 ctggcgtggc tggttcgggt aagagtacct tgattcattc tgttttccta aaagaatatc
     4261 cagatgcgat agtgatcgac caatcagccg ctcatgccaa tattcgctct aatcctgcca
     4321 cctatactgg gataatggac ccgattcgaa aagcatttgg aaaagaaaat gatgtcagtc
     4381 catcactctt tagttacaat tccaaaggcg cctgcgaaaa ctgtaaagga cttggtttca
     4441 caactatgga tttagctttt atggattcga ttcgcacacc ttgcgaagta tgtcacggca
     4501 agcgattcca agattctgtt ttgcaatata agctaaatgg taaatccatt agcgatgtgt
     4561 tagaactaac tgtctcagaa gcactcgatt tctttacgga taaaaaaatc ttgaagaaaa
     4621 ttgaggcaat ggaagaggtt ggaattggtt atgtcacgct tggccaagca cttagcacct
     4681 tatcaggcgg tgagtgccaa cgtttaaaac tcgccaatga gcttcataaa aaagggtcga
     4741 tttatattat ggatgaaccg acgactggtc ttcatatgtc agatatcgaa catattttga
     4801 cgattatcca ctcacttgta aataaaggaa ataccgttat tgtaattgaa cataatgtcg
     4861 atattattcg taacgcagac tggattatcg accttggccc agaaggcgga agtgctggcg
     4921 gacaaattat cttcgaaggc gctccccttg atttacttga aaataaacaa tccttaactg
     4981 ccaaatatct ttaataaaaa aagccgtttt gtctatagca gacaaaacgg ctttttttat
     5041 tgtagttttt ctaaataatc cacagcatct tggaaagttt taactggaac gattttcatt
     5101 ttggagtcaa tgtctttcgc tgttttaact gctgtatcgt aattactttc gatacttggg
     5161 tcgctttttt tcatttcatc ggtaattgga tcattgggag caaagaaaac cttcgcaccg
     5221 cttttatccg cagcaacgac cttttgatca attccgccga ttctaccaac agttccgtca
     5281 gggtcaatcg taccagttcc ggcgattttt ttgccatctg taagatcatt tttttggaaa
     5341 cggctgtaaa tttctaaact gaacattaaa ccggcagaag gtccaccgat tttttctgag
     5401 tcgattttca cagttggatc tgcggtgatt ttttcatcat ccacaagcgt gataccgatt
     5461 cctggagtgc cttttttatc aattgctgtt aatttgatgt tggcttgctc atttttgtcg
     5521 ccgtgtttgt agtttatttt gactgtgtct cccacttttt tactgtgaat ataatcaata
     5581 aattcttggc ttgatttaaa cgcattccca tcaatttctg tgattaggtc gccagcgtga
     5641 aggacatcgg ctgctggaac gtcatctttt acgcttaata cgtatacgcc atcataagtg
     5701 actttgactt cttgaccggc tgctttataa gccacttgaa tggcattatt tttggattcg
     5761 ttcatcattt gcatttggcg aacgttatat tcttcgtcgc tttcattctc gtatttgata
     5821 tcgctatctt tttctaactc atgatatggc aaaaatttag cggtcatata tgtataaata
     5881 ttcgcttttc ccattgcaat tgtcactaga ctgagcgaac cgtctttttt atttggatgg
     5941 tcatcaactg taacgagtgg agcaagttct tccgtaccac caggttttga aatataatac
     6001 ggaactggaa taaaaaagcc cgctataata ataattaaca gcactatcgc cgttattttt
     6061 ttccactctt tacgcatttt ctgtccatct cccacttact taaattttgc ttgtacttgt
     6121 tcgttcacta tttcaggaac aagttcgctg atatcacctt gatactgcgc cacttctttt
     6181 accatactgg aacttaaaaa agaatatttc gtattagtca tgacaaaaaa agtttcgatt
     6241 tccgcattga gcgttcggtt catcgaagca atttgcatct cgtattcaaa atcactcacc
     6301 gctcgaagcc ctctgacaat tgcagtagcc ccgcgcgtag cagcataatc aacagtcaat
     6361 ccgctcgcac tttccacttg aacatttggc aaatgagcgg ttacttgtct aatcatttcc
     6421 atccgctctt ctatcgtgaa aagtggtttt ttggatgagt tgtttaaaac ggaaacatac
     6481 agcacatcaa aaatcttcgc tgcccgttca ataatgtcta agtgcccatt cgtaatcgga
     6541 tcaaatgtcc cgggaataac ggcaattttg tcacccattt ctacgcctcc tgaaattcaa
     6601 atatagataa aacagtaatt ccataagaaa ctgatttgat tttctcgaat ttaccgattg
     6661 tatctggcat gattgcttct ttgtcatgct cgcaaataat tcttccattt tcgttaacta
     6721 attctaattt ttctaaagtt actagtaatt tttctaattg ttgcttttta tatggtggat
     6781 ctaagaaaac aaggtcgaat ttccactcat ttttatggag taatttgagt gctcgttcgg
     6841 catcatttcg gtatacttcc gcacgctctg taaaatggca tccttctaag ttttggcgga
     6901 ttgttttaat tgcgagcgct gcttggtcaa taaaaacagc tcgttcggca cctctactca
     6961 acgcttcgat tccaagccca ccactgccag caaataaatc aagcaccata tccccgtcaa
     7021 aaaagggacc aataatcgaa aataaggatt cttttacttt atctgttgtt ggtctcgtat
     7081 tgtttcctgg aacagctttt agagcgtgtc cttttcgttc tcctgcaatg actctcatgt
     7141 ttttgcacaa cctttacttc aatgtctttt ttactttatc acaaatagaa gcaaaaaaac
     7201 agcaagacta gttgagatag tcttgccgtt ttggttagat actgatttgc acatcttcgt
     7261 ttttgtgttc gtacatcatt tcttttttgg attcgtattc tgtttttaag aacggacgga
     7321 aagacatttc cacgcgtttc acataatgaa aacgagaaac tttgttagag atatcttcta
     7381 cttcagccat atcacaatat aataccgcat atttcaactt gcgcgataca taatgcacat
     7441 ttccaaatcg cttcaaagat ctaacttgtt taagatgatt catccaaacg acgatagctt
     7501 gtctatcatt ttccattgtt taagcccctt ctttttagga taagctttac gctgaacaac
     7561 cgcagcctcc cccgctgcca catccacctg tagaacaagc agattttgtt tcaaaaaacg
     7621 gattaccagt tggtactttg atattctctg aaactgcact tgcgagaagc aggctgattt
     7681 cgtccaagag agattgtaaa tccatctctg cccggcgaaa agctgccaca ttttgatcca
     7741 tatcgacttc gcgtttataa gcacgagtct ttctggttac ttctttatag tcaggatgat
     7801 accggccgaa ccgctgcact tcctcgtatt gttcttttat tcgtatgaat tgacgaatat
     7861 ttttttgtga agtagcgtca tttagcaacg cttccttagc aagtttataa ttttgcgctt
     7921 cctcggagtt tagaatcatg ctagcaagct catctgataa atcgagtagc gccatatttt
     7981 ccattgtagc gagcaatcta gccacctcca tataacttac ttttttatta taccatagaa
     8041 ctattattta ataataaaat tttgcgtata gtattttcga tatgttcccg cacccatata
     8101 ggtatatgaa ccatctagta gattttctct atgtccttta gagttgagcc aaccttctac
     8161 tgctgctgca ctatcgacat agttataggc gatattttca ccagctttag tatatttgac
     8221 gtccccttta ctaagtcgtt tgcttagatc tccttgtgtc ggtgaagtat ggtcaaaata
     8281 atcatttttc ttcatatcaa cactatgtcc atatgcaact ttcgcaacag actcgtccca
     8341 agctacttct tctattccgt atcgatcacg aataacatta gtgatttcta gcacttgttt
     8401 actagaagca tcatcaattg cattccaatc tgctggcgtc aacttttctt cataaatttc
     8461 accttggtaa gataattcat aggggcgcat tttgacgaag gataatttat tgaggtaacg
     8521 aacactaatc agttttgact taaatttatc gaaattaagt tgcgcataaa cgccacttcc
     8581 aatgttaaca atcggacggg catttaagtc ttcctcagaa agttcgaatt tataatagct
     8641 gtctttatag ttgaaggata tttccgattg caaattggca tcggtaaata ctttttcagt
     8701 ggacatacca atcgtatatg gcatgacatt taaatcttgt cctagcgcat aaatggtttg
     8761 cacgatattt tttgttacac ctacttgcat atagcttgtt cctggttgac tataaatgta
     8821 attatcgtaa ccgtatgctg ttttgtctac acgcaccggg tccccaaact ctttctttaa
     8881 ttcacttacg tttttattaa taaatcttgc caagctggaa ctatcttgca cttgtttcgg
     8941 attttcattc gttgtttttt tattatcagg aaaattagac tttgttgccg tatcttcggc
     9001 tgtatttttc tctactgatt tactaaaaaa aagatctgtg ttgtatccaa tgaacaggca
     9061 aatgattaat agcacagcta ctcgcattat aaacttcaca ttttgccctc ctcggcagta
     9121 ttttgttttc ttgatgtaac tttcatttta ccaatactat tatcatttga aaagctttaa
     9181 aaatcataaa aaaaacaatt acaaggaaac gcgtattgca cgcttcttcg taattgtttt
     9241 ttatttttat aagaaaatcg aaataactac cattgctacg aataaaattg tcatgtaatt
     9301 taatgagtaa acgaacatcc atttagccca tttaatacta tcttccattt taaagccgta
     9361 aatactaagt gctaaccaac cgatattcag taacgttgct aaaacaacat aaacgatgcc
     9421 tagttcaaac ataaagaacg gtaggatagt taataaaatc acccagaaaa acatgctttt
     9481 ctttgtacgt tcaatgcctt ttactactgg taacattgga attccagcag ctgcgtattc
     9541 ctctttccgt ttaatcgcaa tcgcataaaa atgcggcggt tgccaacaaa acattacgag
     9601 aaacagcatg attggtacga tgctaaatga tggttcgact gcaaaccaac caatcagcgg
     9661 cgggacagcg cctgaaaaac taccaattac agtattacta actagttttc tttttgcata
     9721 tagcgaataa acgactacat acaaaaagac cccgataacg ccaagaactc ctgcttgcca
     9781 agttgtcata aataacataa ttgtaccgac aacacctagc acaagcgcaa ccattagtgc
     9841 acgcttacca gaaattttcc cggtcattgt tggtctgttt tttgttcttt ccataattcc
     9901 gtcaatatca cggtcgatga cattgttaaa agcgcccgaa gcagctacga taagtgctga
     9961 accgacgata gtaaaaaata tcacgtctac attttgaata aaagaaattc catttaactg
    10021 aaaggctaac cacattcctg taaaagcagt aatcgtattg gaattcacga taccaatttt
    10081 cacaagctcg gtaaaatcac ggacagtaaa tctactcgcc gataactccc cagtcttttc
    10141 tatctgattc actttttctc cccctaacac ttgctgatat aaaccagtga ttgcgaactg
    10201 atagatatct tataccctta ttatgtgaaa aatacgcccc ttttgtcaat aaatcggctt
    10261 tagtcttgta cgctttactt cttcaaataa acacgctaca attagtttga tgtgtactca
    10321 tgaacttata catagacaca aattttagta aaatctcaca cgcatctaaa ggagagattg
    10381 gtagataatg aaaaaattct tgaaagtttg gtccgtacta acgattattt gtatgacggt
    10441 cgttgtgttt ggcggagcgc tcgtaacgaa aactggttca gctgatggct gcggtaatag
    10501 ttggcctcta tgtaatgggc agttagttcg tttaacagat gttactccgg aaaaattaat
    10561 tgaattcatg caccgaatga cgacgggaat cagttcgatt tttgttattg ttttagcaat
    10621 ttgtgcttgg atttatatga aaaatcgtcg cgaaacaaaa ccacttgcga ttattgcggt
    10681 tctgtttcta attattcaag cgttaatggg aatggcggct gttgtttggg gacaaaatcc
    10741 gtatatcatg gcgctacact ttggaatttc gatcatttgt tatgcttcga ttgtattgct
    10801 tgccttgatg atttttgagg tagaccggaa attcgatgcc agaaacctcg tgatggggac
    10861 gaaattacgt attaatattt atgcactaac gatttacacg tacttagccg tttatactgg
    10921 tgcacttgta cgccacgaaa aagcaagtat ggccgttccg gtttggcctt ttgaaaatgg
    10981 gcactttatt atgcctactt cagtacaaga ttatgtgcag tatttccacc ggttagccgc
    11041 atttatttta attgtttggt tgctgtatgt aacttggctt gtgttccggg attacagaag
    11101 ataccgcgtg cttactttta gcatggtgtt gtcgcttgtg tttattgcac ttcaagccgt
    11161 tactggggcg ctgtctgttt atacaggagt gaacttgtat atcgcgcttg cccatagctt
    11221 gattattacg atgttgttcg cgctactttg ctacttatgc ttactggcat caagaagtaa
    11281 aagcaatcga ctacgaataa aataacgaac acggctggca actttttgtt gtcagctttt
    11341 ttatttgttt acggcttttg cgtcgtttta tgctaaaata agtgagagta taagtcaaac
    11401 gaggtggata acttggataa aacaaagaga aaaatgattt atgagacttt tatgcttatt
    11461 ctcatagtgc tttcccttgc cctattaccg tacagaaaca gctttacatt tattttaaat
    11521 tggattattt gggtgatttt tacgctagat tatctggttc gactttatcg tgctgataat
    11581 aaatggcatt atgtaaaaac gcatccgttt caactcattg caatcattcc attttacggt
    11641 ggatttagag cggctcggat tgttagtttt gtccatctat taagtattac tgcgatgggg
    11701 agacggtata ttgtaccgat ttatagcttt ttccgttcta atggtttaaa tcgattttta
    11761 atgatttttg tgttacttgt gattataatt cctgttccga tggtatttat cgaacctgaa
    11821 ataaacaatt atcctgatgc gctttggtgg gcgattgtga ctgcgacaac agttgggtac
    11881 ggtgatatcg ttccagtgac tccgattggg cggattttgg catcgattat gatgttgttt
    11941 gggatagcgt ttatcgggat gataactagt acgataacga actttttccg cgctaagaaa
    12001 gctactactt ctagcacaca aagagcaagc aagattaccc aattaattgc agatacgcca
    12061 gatttaacca aagaagaaat tgcggtcgta gagcaatttt tggcactacg aaaaaaagaa
    12121 ctggctgatg aaaatataaa aagtgatagc gaatgatgct atcacttttt tatttgtttt
    12181 tcgacttggt tacggtaacg ttcagataag gcttctaccg ccaaaatgcg ttctaagtct
    12241 tcttttgtcc catttttatg caaaacttta tcgtggcaaa aggctactgt tacgccgtgt
    12301 gattcttggt gaatttgttt gatttcatcc gttgcatgta taatgccagg agtaatcgtt
    12361 cggcataggt atccagtaag tccagttttg tgaattgctt tatagagatt ggggattcca
    12421 ttgaactttt caattgtact acatggattt cgggcttccg ttatttggat aacggtttcg
    12481 ccaatctgga atttatcgcc aatttgaaca gaactttcca acatattcgt agtgatgaga
    12541 ttttcaccaa aagcagttac ttgtagctct tcgccaaaca ttgctgccca tttcgcgtaa
    12601 tgttcgtatg gataaataca aaccgtacga tccggaccac cgtgatactt caaattatgc
    12661 ggtgcgtcat tttcaaaacc ggtagtggtt agactggcgg attgtacaag ctttttttcg
    12721 attcccgtca tcatccgttt gttatttgaa aggttaagtt ctttcggctt acctacagct
    12781 aaatgcatga ttttccgttc catctgctta ctcctttgaa gttatttttt tcggcttaaa
    12841 atagcaagaa tgcccgtgat aagcgcaata acgctgatag ctactgcggt ccataataaa
    12901 atcgtattat ctccagtact gcttgtatcc cctgctgtgt tctccgctcc cgcaactact
    12961 tctccgtgcg agccagttgc ggatttggaa gactctttga caatttttgt ggtagcatgt
    13021 ggtgtctcgg aatcttctgc gccaacccat tcaacgatgg agccatcttc ataatattga
    13081 taggcattcc aagcaatttc gccttcttca cttggatttt tagcgataaa actaaagcgc
    13141 tggaattggc ctttttcaat tccgttgcct tctgtttgcc atgttactgt gccatttttc
    13201 ttatctactg tcgttgtcca gcctggcact ggttcataag attcgaatga tacgcctttt
    13261 tctactttta aaacgatttt tttagaggcg acatcttttt ctgacggtac tttcattgtg
    13321 taggtttccc aggagtctac ggtcgattcg ctcggtaata cagaaacatg tgcgctcgct
    13381 tgaaacggaa tgataaagac agctaataaa acgacgatgg agctgataat ttttttcatt
    13441 atttttcccc tttactgtgt aatattggtt gtaaatgttt gatttatatc tgtgaaatct
    13501 tttgttaaac catgaaccgt aatttcccac ttgccggttt gattaatata tagcccttcc
    13561 gcaaagtatt gcgtatcatt tgcaagtttg gcttggaaag ttgatttttc atctgtttta
    13621 gtagattttg ttgtaatcgt cacttgttca aaatctgttt tggcagaacc atctgctgaa
    13681 gtaaaagtga tgataaactg gttttgtcca acggtcgctg gttccactcg taaattgatt
    13741 tttgcttttt cgccttctgc tgcaattgtt tcatcaaatg ctttcggagc aggcggtggc
    13801 ggtgtttgta cgttggttaa aacacttgcg acaacaagga taatcgtccc aatgataagt
    13861 tccatcaaaa tggttttaaa tggcaatcgt tggtttttga gtttgatata aatgtaatga
    13921 ccaagcccta gtagtgccat tagtaaaaat aagccaattt tgaaaagaag tattttgccg
    13981 taattggttg taaataaatt ggccatttgt ccgatattca tcactgccat taataggccg
    14041 ctgactaaga tggaggcgac tgcaatgatt gctacaatcg caaagcggct ccaaacttcg
    14101 cgcgctttcc cagtccgagg taatacgaat aaaagcacta aaatcccgcc aacccaaacg
    14161 cttgcagcaa tcatatgaag catatcagcg ctgatactta ctattttatc ggcactggct
    14221 gcggcgtgtc cattctgagc cttcgcaaaa atcaaatatc cgattaatgc actctcggtc
    14281 aaaagcgcga accagctcca ttgtttcttt ttaaagaaca tcatgatagt aaaaatggca
    14341 agtagaagcc atacgataag ttcactgatc caaatatacc ctgttttcgt agtcaagaac
    14401 gcagctaact tactcggtcc aaaactttca ctgatggaaa cgcccgttgt gatacttgtt
    14461 tgtatgaaaa gttgcatgaa gagagccaca cccagaagtg ctagcgctat ccaagttact
    14521 tttttcaaac gtccagaaat tttttctgtt atctgttctt ttcgtggata aagacctaat
    14581 ccaaaaagaa gtacgccgat aaacagcgaa aaacctatgt ataaaacggc tttttgaatc
    14641 gaactaattt gcaagtccgc tccacttgag ggaacttccg ctgcttggaa cgtcgctttc
    14701 gtattgccta acttaaaaga aatgatcccc gtaaccgcat gtccatccgc tgacacaacc
    14761 cgccatgaaa cagaatagac atctgctttc aaatcagtcg gtagagatgc ttcaaccata
    14821 tgattattct ttttagaaac agtggttttc ccggtttcca cttgtttccc actagaattt
    14881 ttgacttcta ttaaagggaa atccgcttca atttcttcat taaaaacaag cgttactttt
    14941 tcgggtgcgg tttgaatatg agattgatcg gccggattcg aattttccaa gtaagcatgt
    15001 gcagaaacat gctgaactgg cacgattaat agatatagta taatgagaaa aaaactgacc
    15061 cttttcaata atttcatttg ctactccttt ttcgaacgaa cggttttact ctttttaact
    15121 tatcatgtgc aacaattgaa tggaaataat cggctcattt cctattgcaa atgatgctac
    15181 gattatggca tagtgataga aaaggaggtt ttacctatgc ttcgttatat cgaattgttt
    15241 ttcatgtttg cctttgttac gctcatcacg atgtggattc aagcacttct agcaaaatgg
    15301 aaacctacta ttcttcgttc tttctggctt cgtacgctca catttattat tattggctac
    15361 gcattaatgg cgccaacgct atacataggc agtttattgc taaaataagt tcagttgctt
    15421 tcacatcgca gttagattgt ttatactggg aagtgggagg tgaattttca tgaaaaaaat
    15481 gttagtagaa tttagagact tcgcgttaaa agggaatgtt ctagaccttg ctgtagcggt
    15541 agttatcggg gctgctttcg gtaaaattgt ttcatcttta gtagataaca tcattatgcc
    15601 acttgtcggt gtactacttg gtggtcttga ttttacagat ttaagtttca aagttggtaa
    15661 atccgttatt cagtacggtg ctttcatcca gtccatcgtt gactttgtca tcatcgcttt
    15721 tgccattttt attttcgtca aggtacttac tagttttatt aagaaaaaag agcaaacggt
    15781 ggaagaaacg ccagtacctc caactgagga atacttaaaa gaaattcgtg atttattgaa
    15841 agaacaacag aaataactga aaaaatcctt cttttgtgga aggatttttt atttacattc
    15901 gcgcttataa attatgtttt ctaaagctaa aaagttaggc tatctatctc ccttaaattc
    15961 aggaaaaaaa tagcctaact aaattctatt tcaccgttgc tgttttttta attgtatcgc
    16021 taaaaacatt tctactgctg cgacaactaa aaagataatt tgtaaaataa atacatagcc
    16081 gataatcagt aactgtacaa tcatccaaac tgcgagcacg gccgctgctg cgaacatgac
    16141 ttctttcgtt cgtggtaatt ttttcagcaa ataaatgagt gctgctaaat ggaataatcc
    16201 aacaaatacg aataaaaata tgcctggtac taaataatcc acgaacggtg aaccatcaag
    16261 taatccagtt gaaagagata gcaaaccacc acttggcatg aaaaccatgg ataatccacc
    16321 ataaattgct cctattgctg taaaaccaac tattacaata ctacttatac gtgtccagtt
    16381 catggcgttc tcctagtcgt ttttctagta gtataccacg aaaactttca ttctgccgtt
    16441 tttcttcgtt ttattttttt gattaaatcg atcaatacga aaaccgcaat accgcatgcg
    16501 acaactgtag tgagatacca agctggaccg gattctgcgc gtactcctag ccaataagtc
    16561 actgttttcg ggttaaaaaa tgcaaagcaa attgcacaaa atgcaataat tcgaccaata
    16621 atggaatttt ctctcatagc aagtgcatct ccttttcttt tattataaca aggaataaga
    16681 aatgataact tagcttttcg gtcccaaagt tgtttttcat ctgacaagtt ttggtttttt
    16741 tacacaaaaa aactacgaca agagaatttc ttgtcatagc ctcacagtta tttattaaca
    16801 atgtttagtt gttgctcatt aacgagtgga taaatagcta gttctttgct ctctaaatcc
    16861 tcttggtgca tatccacacc agtaatttga ctgtttccgt atgttctata ataataaatt
    16921 cctttatcga tattgcaaca tgaggaataa atggtgtgct cgtatttttc cccaccaaca
    16981 tcacaaagac ctttttgttg ttccaccgag cctaaaatat ggaaaaattg gccaatgctt
    17041 tctgattcag aatcacctga aacagaattc aatttggtaa aagttgcttt cacaaaacga
    17101 gacatagaag ataaatcgcc aggtaagccg attccgccca tcccacgact ataagcatcc
    17161 aaatcaatct cgttggaaaa attattttct ggagtttcac tcgaaagaac gcgataattg
    17221 tttaaattaa atagttggta atcaaatgtt ggattatttg ttaacacgcc aacaggatta
    17281 tcataaatgt gaagtccatc tttcacacat tccactacaa tagattcgtt ttgatcagcc
    17341 atcaaccaat gtaaaggaga tagcggcaaa ttttcactaa agctaatatt cacgagattg
    17401 attctctgaa gtaatcttct tgcttctttt acagtagcgc attgaccaag aatccacgga
    17461 ataaattcaa atggcgttac attgtcctta ccttctgcaa aatccttgta atccgcattt
    17521 cctgagaaat tgagtcctgc catactaagg cctttttcat tggtagcatc gtaatacaac
    17581 gggtagtttt ccatcacagc agcaatacca ataagtgcat aatgcttctc tatatcctct
    17641 accttgcgaa aatggaacgg gtaatttttc ggcgtaacaa ccacaacttc tttgtaagaa
    17701 agttcataat cgaaattcct tccaaaatag tgatccttcg ttgtataagt tattgacgta
    17761 cacattaaaa atccctcctc aaatttttca ccatacatgt ataccagtac cctcggactt
    17821 ttgtgtaaaa cataatttgt ggtttttttc acaaaaaatg gccaatttat tacctcatac
    17881 aagatgattt ggctctgata aaaatttttt aaagtatact cctctattaa cttcttgaaa
    17941 atattctgct ataaaatcat aataaaaaag atccctggaa aatccagaga tcttttaaaa
    18001 atgtcagctg atgttaacct tacatcatgc cgcccatgcc acccattccc atatcaggaa
    18061 cagctgctgg gccgttttcg tctggtttgt ctgctacgac tgcttctgta gttaatagaa
    18121 gtgcagcaac agatgatgcg ttttgtagtg cggaacgtgt tacttttgtt ggatccacaa
    18181 taccagcgtc aatcatgttt acccattcgc cattagctgc gttgaaacca acgccaactg
    18241 cttcgtgttt caagcgttca acgataaccg aaccttcaag tccagcgtta tgcgcgattt
    18301 ggcgaactgg ttcttctagg gaacgaagca cgatgttgat accagtttct acgtcacctt
    18361 ctgcttctag tgctgctact ttattgtaaa tacttacaag agcagtacca ccaccagcta
    18421 cgataccttc ttctacagct gcgcgagtag agttaagcgc atcttcaata cgtaatttac
    18481 gttcttttag ctctgtttca gttgcagcgc cgactttgac aacagctacc ccacctgcaa
    18541 gttttgctaa acgttcttgt aatttttctc tatcaaattc agaagtagtt tcttccattt
    18601 gcgcacggat ttggtttacg cgagcgctaa tttgtgtgga atcgcctgct ccttctacga
    18661 ttgttgtatc atcttttgtt acaactactt tgttcgctgt tccaagttga tcaactgttg
    18721 ctgtttttag ttctaagcct aggtcttctg tgatgacttg tccgcctgtt aaaatagcaa
    18781 tatcttctag cattgcttta cgacgatcac caaaaccagg agctttcacg gctactacgt
    18841 tgaatgttcc gcgaagtttg tttagtacaa gagttgcttg agcttcccct tcaacatctt
    18901 ccgcaatgat taacattgga cgaccttgtt gaacaacttg ttctaaaact ggtaagattt
    18961 cttggatgtt gttgattttt ttgtctgtaa ttaaaatgta tggtttttca agaacagctt
    19021 ccattttgtc agaatcagtc accatgtatg ggctagtgta gccgcggtcg aattgcatac
    19081 cttctactac gtctaattct gttgcaaagc ctttggattc ttcaatagtg ataacgccgt
    19141 cgttaccaac tcgttccatt gcttctgcga ttaatttacc aacttcttca tcaccagaag
    19201 aaatagcagc aacttgagcg atagactctt tgctttcaat tggtttagaa atagctttta
    19261 attcttcgat agctgttgct acggcttttt cgataccgcg gcgaacgcct actggatttg
    19321 ctccagctgt tacgtttttc aagccttctt gaatcattgc ttgcgctaaa acggtagctg
    19381 ttgtagttcc gtccccagca acatcattgg ttttagaagc aacttcagat acaagttttg
    19441 ctcccatatt ttcaaatggg tcttctaatt cgatttcttt tgcaatcgtt accccatcat
    19501 ttgtaattaa cggagaaccg aatttttttt ctaaaacaac attacgacct tttgggccaa
    19561 gtgttacttt tactgcgttt gctaattggt cgacaccacg taacatggca cgacgagcat
    19621 cttcactaaa tttaatatct tttgccattt tatatttccc tccgattatt tcttttttta
    19681 attatttagt aattgctaaa atgtcacttt cacgtaaaat cagatagtca gttccttcat
    19741 acgtcacttc tgttccagag tattttgcga agataaccgt gtcaccttct gcaacttcaa
    19801 gtggttcttt tgtgccgtta tctagcacac gacctgaacc gactgcaaca attttccctg
    19861 attgcggttt ttctttggca gagtctggta atacaattcc gctcgctgtt ttttcctctg
    19921 cttcaagtac ttcaattaca acacgatctc ctaatggttt taacaatgta aatgacctcc
    19981 tctgatataa ttacattttt cattttagca ctcggcacat tagagtgcta atacagttat
    20041 tatgatacca aactgaataa aaaatgcaag caaaaacgtt taaaaaaata gaagaattct
    20101 tatttgcggt aaagcttcat aacgagtaca ataagaagag ctatttccgc ttatttgaag
    20161 caatttagcc aatgtttttt atagaaagga tgcgtatttt ttggctaagc gttatattac
    20221 gattgtttta gtttatttat tattactatt ttctgcatct gttgggattc cgattgttca
    20281 acatatttta ctaagtacaa catcactttc agcagagagc accgcatctt atggaatggt
    20341 tatttggtcg atattctcta atcttttatc acttgcaatt attattccga tgctttacag
    20401 aaagccaaaa gaaaataaaa tcgaaattgg tgaaaaaaca aagccgcttc taagtattgt
    20461 gtggattgtc ggaggagtca ttggcttata tgtggcacaa attatttgta gtgttattat
    20521 tacgatgatt tcaggggagt taagtaattc tgccaatacg gagttacttg ttgatttgac
    20581 taaagctgca cctattttct tgatctttat ttctattttg ggaccgattt tggaagaact
    20641 tgtctttcga aaagtgattt ttggtgggct aagtaatgtg acgaatattc atgtggccgc
    20701 agttattagt tcgcttttct ttggattact tcacggagat atttctttct tacttactta
    20761 ttttgtcatc ggactaattc tttgtttcct ttatacgaaa acaaaacgga ttgttgtttc
    20821 gatgggtgcc catattttaa tgaatacgat tgttttgctt ttgagtcttg gaattattgg
    20881 gggataatat gaaaaattca ttaataaagc aaagtttttt atattttgca cttggtcttg
    20941 tatttgtata ttttgttgtt gttcgtgtgg ctgattatgg ttatgatgtg cttgcatgta
    21001 tactaattat catgacatta atggattttg gtattggcat cggtctgatt atcactggac
    21061 ttaaaagacg taaaaaaaac ctgtagaaag taagtgttgc ttaccttcta caggtttttt
    21121 tattctgttt tcgctggata attttccagg aaatagatta acgtttgtaa ttccgttgta
    21181 agatcgatat ggtgcacacg aacttgtttc ggaacactga tacgagctgg tgtaaagttt
    21241 agaatacctt ttacatctgc ttcaattaaa cgatctaccg ttacttgtgc ttcgtcagct
    21301 ggaactgtca gaataactac ttccacaccg ttttcacgaa caatttcttc catatcattc
    21361 aaatgataga ttggaatatc ttgttgaaca ctacctactt tcgctggatc tacatcaaat
    21421 gcagcaacga ttttgatatt attatttttc atgaaattat aatgtaataa tgctgtacct
    21481 aggttaccta caccgattag tgcaacattt gtctgtttgt cctggctaag tgttttgctg
    21541 aaaaagtcga gtatgtaaga aacgttatac ccgtatcctt tcttacctaa tgcgccaaag
    21601 tacgaaaaat cacgtcgaat agtcgctgaa tcaactttca ccgcttcact taattccgca
    21661 gatgatactc gttccttacc tgactcatct aagtatttca agtaacgatg atataatggt
    21721 aagcgttttg ctgtcgcttg tggaatttta gttgtttcct ccatcatgcc ttctgtccct
    21781 tcttctttta attttttctg aagttgaagc tattgtgaac tgtacttcct ttcacatgct
    21841 tgcttatata ctataaacat ttcacaagga atgcacaaac tttttgctca tatctttcaa
    21901 gtaaggtttt gtcccgcaaa atatccggta cagtcctctt tttatattct acgctaaaat
    21961 cacaaataat gcgagtgttt tcacaatctt ttttattcaa gctgtcttgg ctatctcatt
    22021 gcgattactt agcttttaag ataaactagt agggagaacg ttcgaggaga gagattatga
    22081 tattattaca agttcagcaa atttctaaat tcttcggtgc agaagttatt ttagataata
    22141 ttaaattaga agttaaaaca ggtgaccgaa tcgctctagt tgggcgaaat ggtgcaggaa
    22201 aatccacttt acttaaaatt atcgccggca aaatgagtta tgatggcgga actatttcca
    22261 aaccaaaaag tgtggaaatt ggctatttgg ctcaaaatac cgggctagaa tcttctaaaa
    22321 ccatttggga tgaaatgctt agtgtattcg attcactgcg cagaatggaa gctgatttgc
    22381 gcaaaatgga gcttcgtctc ggtgaaccgg aactctataa tgatccagaa aaataccaag
    22441 cactgatgac ggattatgat acgttacaac atacttttaa agaaagtggc ggctatactt
    22501 acgaagcaga aatccgttct gttttaaatg gattgcgttt ttatccagaa gattatgaag
    22561 tagaaatcgc ttctctaagt ggtggccaaa aaacgcggct tgctttagcc aaattactgc
    22621 ttgctaaaca agatattctt gttcttgatg agcccaccaa ccatttagat atcgaaacac
    22681 tagcgtggct cgagacctat ttacaaaatt atcatggttc gttactcatc gtatcccatg
    22741 accgctactt ccttgataaa gtcgtgaatc aagtatacga aatcagccga accaaaattg
    22801 atcactacaa aggaaattac agttcattcg ttaatcaaaa acaagcgaaa ctagaacaaa
    22861 tgtggaaaga gttcgataaa caacaaaaac agattgccaa actagaagat tttgttgcta
    22921 gaaatattgt ccgcgcatcg acaacaaaac gagctcagag tagaagaaaa caattagaaa
    22981 aaatggatgt gcttggtcgc ccgcaaggtg atgaaaaagc agcgcatttt ggtttccaat
    23041 ttgaaaaaca aacaggtaaa gatgttttaa tggtagatca gctaagcatt ggttacgcaa
    23101 aagataagcg cattgcttcc aacctaacgt tcgaaatgaa acgccaagat agtctcgcgc
    23161 tcgttggtcc aaacggaatc ggcaaatcaa ctctacttaa aacgcttatt cgtgatatcc
    23221 cagctttaag tggcgaattc cacttcggtg ctggcgtgaa aattggctac tacgatcaag
    23281 aacaagccaa actgacatcc aacaaaactg ttttaatgga gctatgggat gattatccag
    23341 agttgaatga agtaaacgtt cgtacaacac ttggtaattt ccttttttca gatgatgatg
    23401 tattaaaaaa tgtccagtct ttaagtggtg gcgaaaaagc gcgacttgcc cttgctaagc
    23461 tcactttact tgaagccaat gtccttattc tcgatgaacc gaccaaccat ttagatattg
    23521 aaagtaaaga agttttagaa gcagctttaa ttgattttga aggcacgatt ctcttcgttt
    23581 cccatgaccg ctattttatt aaccgaattg cttctaaaat cgtcgaacta gcgcccgaaa
    23641 aagcgaccgt tttcctagga gattacgatt attatcaaga aaaattagca gaagaaaaag
    23701 aactggcacg acttgatgcc gaggatcgac gcaaaaaagg cgaacaagtg gaagcgacct
    23761 cctctgttcg aaaattaaac tatcaagaag aaaaagaaca acaaaaactt cttcgccaaa
    23821 gaaaacgcaa actagaagaa gtagaaaaat ccatggaagc aacggacgaa aagattgccg
    23881 agcttgaact tcaattaacg aacccagaag ttttccaaga ccatgaaaaa gcccttgaaa
    23941 tcactcaaga gctagacgcc gtaaaagctg acggagagaa attaatggaa gaatgggaac
    24001 aaataagcga agaactggaa tccatgtaat ctgcataaaa aaaggagcaa acaatgaaaa
    24061 agattttaat tatttctagt tcgattatcg ttggtttact tgtcattatt actatttgcg
    24121 caagttttta cttgtatagt tatgctttag ctcgtgacaa ttccagcatg aatgacactg
    24181 caacaacaga cgaaaccact gccacagcca aactagcaaa gaaaaaccgg gaagaaaatg
    24241 tggcttggat ggaaaagcaa aatctcacgc aatggacaga aacctcagca gacgatttga
    24301 aacttgttgc tacttattta gcagcagata aaccatctaa cacaaccatc attttagccc
    24361 acggttatcg cggtaaaagc ggtaaagtcg aaatggcagg tctcgctcga atgtatcatg
    24421 aaaaatttgg ttacaacgtt ttaatgcctg atgctagagc gcacggcaaa agcgaaggtg
    24481 aaaatattgg atttggttgg cctgaacgca aagattatgt gcagtggatt gaccaagtaa
    24541 tcgacaaaaa tggtacggac actcaaatcg cactacatgg cgtgtccatg ggtagctcca
    24601 ctgtccttat gacaagcggc gaaaaactac caaaacaagt aaaaagtatt atcgctgatt
    24661 gcggctatac atcgatggac gccgaacttt cgtatcaact aaaagccatg ttccacttac
    24721 cgaaattccc aataatccca acagctagtc tgattaataa attcaaagaa ggtttctttt
    24781 tcagcgaagc aagtgcagtt gatgcggtcg ctaaaacaga cgtacccatt ttttacatcc
    24841 acggtgatgc tgatgctttc gtccctacaa atatggtaga cgaactctat aaagctacca
    24901 atagctataa agaaaaatgg attgtcaaag gagcagaaca cggtcaagca ttcacggtag
    24961 atccaaagac atacgaagaa aaagtacgcc aatttttaaa taaaacgatg taaaaagcag
    25021 ttatcctcta ggaactagat actatctgtt aggaaggaaa aaattggcaa gtaataagta
    25081 aatgtgttac tatataaatg aaaagagagc catgcgacaa catgactctc tcgcaaacac
    25141 catttaagat ggtgacagcc ttttatatga tttatttaaa aaccactagc tgtcaggctt
    25201 atgagtggtt tttatttttt gtcatttttg ctgttcatga ttgttacgac taagactgca
    25261 aaagcaatca tcagcgtaag actctcgaaa acagtcacac gtttatcctt tccaggtaac
    25321 gcctaaaaaa caacataaac accacctact ttctggatga aaaaggctgg tgcaccacca
    25381 taaacttatt tgcatcacaa ttatagcatg caagtatctt tagaaaaaga gttggcgcga
    25441 aagttgtatt ttagaggcat aaccagaaaa ttgagctaat aaaaatagac tgcagcgaaa
    25501 gtaatagttc actttcactg cagtccgaag cgtgcggaac gaaaaatcgc gcgcttttta
    25561 tatatcttcc agcaataatc ccggattcgc attcatatca aaaccactac gttttccttg
    25621 taagaaactc acagtccctg cagcagcaat cattgccgca ttgtctccgc ataaggctaa
    25681 tggtggaata atcagttctg tctctggaag ctctagtttt acttcttgaa taaggcgttc
    25741 tcgtaaacct tggttcgctg ccacgcctcc cgcaagaagc agttgtttca catcgtattg
    25801 tttagcagca cgaatcgttt tgcttactaa aacatccaca acgcttgctt gaaaactcgc
    25861 cgccatatcg tttggatttg gctcctcacc acgctgcctt aaattatgaa gcgtgttaat
    25921 aaaggaagac ttcaatccac taaaactaaa atcaaacgaa ccctcatcca tcatcgctct
    25981 tgggaaatga aacgtatctt cgccgtcttt ggcaagttta tcaatttgca cgccgcctgg
    26041 gtatgcgaga ccaagtgtac gtgccacttt atcataagct tcaccagctg catcgtccct
    26101 tgtctccccg ataatttcaa actcattatc tgctttcatt aaaactagtt cagtatgacc
    26161 gccgctgaca actaatgaaa gtagcggaaa tttgaattca gtttcaaaac gatttgcata
    26221 aatatggcca gcaatatgat gcacgccaac taaaggtaaa ttgtgcataa aagcgagcgt
    26281 tttagccgca ttcacaccga taagcagcgc accaactaga cctggacctt ctgtcacagc
    26341 tatcccgtct aaatcatcca tcgtcacatt tgcttgtttt aaagcttctt caatcacaag
    26401 cgtaatttgc tccacatgat gtcttgatgc gatttcagga actaccccgc caaatcgttt
    26461 atggctctca atttgagaag ccaccacact cgatataatt tcattgccat tttttacaac
    26521 agaagcagct gtttcatcgc agctagattc tattccaaga attaatgtat tttttttcat
    26581 aagtccaccc acatcactag cgcgtcttct ttcgtatccg gataatagtt tttccgaatg
    26641 gcgccgtctt gaaatcctaa tttcttataa agcccttgtg ctacatcgtt ggatacgcga
    26701 acttctaacg tcatccgaac aactccacgc tctttcgcaa ctcgaatcat ttctcgcaaa
    26761 agcgcctcac cataatgatt cccttgataa tctggatgaa tcgcaatatt cgtaatatgt
    26821 ccttcatcta aaacgagcca aacacccgca taacctacta cttgttcctt atatatcgca
    26881 agtaaataat aggcgtattg gttaataata aattcattcc gaaaagctgc ttccgtccaa
    26941 ggtaccgtga atgctgcatt ttcgacattc ataatacttt tcaagtcagt cacggttgct
    27001 tcccgaaata ataaggcttc atccaaactc actcggaacc cctcgattcc aaccatttgc
    27061 tctccgcttc tgccagtttt aaataatcag gaacaaagtt gtctgccggt tctccgtcta
    27121 aattctctgc cagttttaca agagaactag ctcgtgagta agtataatct gcctgcgcaa
    27181 aaaccgcccg ctcaccgagg acttccgtca cagtcacaca aatttgttct gttaaggttc
    27241 cgacaaataa aatgggctcc tcgctagaca ggaattgttc tagtaattca gttaacgcaa
    27301 tatgtccgtc cgcgataaca ctctgcattt caccttcgct tgcttgataa acgcccgcat
    27361 atacattact acggcgcgca tccatcaacg cgaccacttt tccaggaaag tacaaaccat
    27421 tctctgctaa aagtgccaaa gaggaaatcc cgacaatcgg aatccctgca tcccaagcca
    27481 ttgttttcgc aactgttaca ccaatacgaa gcccggtata agaccctgga ccttttgcta
    27541 cagcaatctt ttctaagtca gtaggtttta ctccacattc ttccatcaaa acagcaatcg
    27601 ctggaagcaa ccgcacacta tgattttttt tcaaattcgt tgtatattcg ccgataacga
    27661 caccttcatt aaaaagcgct atcgccatcg tatcggaaga cgtatccatc ccaagtatca
    27721 tttcccaaaa acctccattg caagttgctc atatctttct ccaactggct tcacaaccaa
    27781 tttacgcgta ttctcatcta tatgaaaaag ctgaatttcc aagtattctt ctggcaaatc
    27841 ttcgcgaaca aactgcgccc actcaaccac gcttacacct gctccgtaga aatactcctc
    27901 caaaccaagt tcatccgccg aagcatcttc caaacggtac acgtccatat gataaagtgg
    27961 caagcgtcct ttcttatatt cacgaatgat tgtaaatgtc ggacttttaa tcatttgcgg
    28021 aatcaaaaga ccttcaccga gacctttggt aaaagtagtt ttacccgcgc cgagatcacc
    28081 ttcaagcaaa atcacatctc cagctgtcaa ttgttcacca agttgttttg cgcgaagcct
    28141 tgtctctctt tcacttgtca ttatcaattc gaattccatt acctcacccg tccatcattt
    28201 tctctacata tcataccaca aagccgcgcc aaaataaaaa tcaaaaaaac gcaacgacct
    28261 aagtcgctgc gtctttcgat tgattaataa ttagttccac ttatatccat tccgccatac
    28321 atttttgctg ttacatctgt gatgatttta tttagctctt cgctagaaat aacttcatct
    28381 tttgtaggaa aatcttcaat tggaacaaat tcttctgctt ttgttttcac cgtaaagcta
    28441 atagactcag gagcgctcgc atcagattta tcttctattt ttgtttgaag agtaagtgta
    28501 tctaagctgt tctcttttcc tgattttaca gtaagtttat tattaattaa gtacgtttta
    28561 ttttctttta attctttcgc agcatctgtt aaactcgatt tcatttctgt atacgtggaa
    28621 tcaaaatctg ttactgcatc tgaaccttgg ctttctgcaa taactttaag atctgctttt
    28681 actttttcat catccattaa tttagctact tggttcatca agttcgcgat atcggcgttt
    28741 ttaatcgtaa cgctaacagt accatcatcc gcttctttaa aacgatcttt ttctaagccc
    28801 gtgaaataag tatcaactaa ttttatcgct tttttgttta aatctttcgt cgctgcttca
    28861 atttctttcg tatctacagc tgtttttgcc tctggttgat ctgttaatga actggttaat
    28921 tcttcagtac taagatattt attttttaga tcagggtagt cggtgttaat tttagaccac
    28981 ataccaccag tcgcttgatc taaataacta agtaaagaag catctggctc tacaatggtt
    29041 ttaagtggaa tataggcatt tcccgtttta ctatctacta aaaaatctaa atccattgaa
    29101 attggtagta agttattcgt tgatgttaca ttgaattttg cttctgattt gtttgctttc
    29161 ttgtcagttg atgttgttac agaaagctta atgtctttta aaatccccat cgtttgagca
    29221 cttgggtcgg tgcttgaaac attgatatca tttacagcaa aagaagttgt atatgtagat
    29281 tgatcaggta cattcatccc atttttcatt gtttgaacaa atttaccttg tggtgttttt
    29341 gctgcttttt cttccgcgct ttccccacaa gcgctgatta ctaatactaa agctaacaaa
    29401 attgataata aaatcccttt tttcatgatt ctcctcctag gtgattaata cattaaaatt
    29461 aacacacttt aaggtctgaa aacaagagaa tttacaatag ttcattagtc tgacacaaat
    29521 tcctataaaa aaagcgttcc ttttagaaag gcccgctcgc ttttattttg gagtcacttt
    29581 taaagatgta gcattttcag atacttttcc aggggcgggt gaagtaatat ttgaaccttg
    29641 tggaaataca gctctaacag tatcttcctc tttgatatca gcaagtttca ttgcttttcc
    29701 agtggtcgca tttgttacgg cagtattgct actcactgta atcaagactt cacttgcgta
    29761 attgtttttt tcaccactcc acgttaatgt cccattgact gtcaactcat tattattctc
    29821 taacaaacta gtatccgtta ctgttccgtc aaggactaaa gcaggcactt ctgcttgatt
    29881 acaacccgct aaaaatagta ccactagtaa aaccggcaat attacctttt taaaacctgt
    29941 catcgctctc tctcgtcctc tctgaagctt atcgttcttt ctagcatagc atttagcaga
    30001 aatacaggca attgttttct tgtttcttaa acaattctta tacaccaagc atcaaaccga
    30061 gaaaagcagc tattaagcca aacacatagg tacaacctag ataagaaaat aatacacgat
    30121 aattcgtctt ccattttaat tccatacttt ccactttaaa cgtagaaaaa gtcgtatatc
    30181 ctcccataaa tcctgtacct aaaaaaagtt gccaaaccgg tccaagagca gaggaaacaa
    30241 gaaaacctaa taaaaatgaa ccagtaatat taataaaaaa agtcgcaaaa ggaaagtttg
    30301 ttttccattt acttttgacc aatacagaaa ttccatatcg tagcatcgca ccaagagccg
    30361 ctccaaatcc tacaagtacg aaattaacta acacgatgct cacctcgatt caaaagctta
    30421 ttgctaagca tccgcccaaa cttcaccata ataagcccac caatgaaact agctaacaca
    30481 tagctaaccg caaataacca tgcgccactt tgcactagtt gaattgtgtc tacactaaaa
    30541 gccgagaaag tcgtaaacgc gccaataaaa ccagtcccaa tcccgttcaa aattaccaat
    30601 gaaatacgag atttttctgc caaaaattgc ataagaaaag ccaacaaaaa acaacctatt
    30661 aaattaactg ctaatgtcgc agaaggaaaa tccccgccac caagccacaa gttcattgca
    30721 tatcggcaca taccacctaa tgcgccaaaa acccctacat ataaaaaata catctccaag
    30781 accccacttc acaaaaaaac taccctgaaa tatttgtatt ccgggcagtc gcctttgtcc
    30841 tatttctact atactataac gcaaaacatt ccaattattc aactcactgg aagtcgaagg
    30901 atggtcttca ttttttctgg gtccacttta cgcggatcac tcaaataaat ttcgtggtgt
    30961 ttacgaacag cccctgtatc attatgaagt ccttctgttt ccatgaattg gtgcatttcc
    31021 gcgaccgttt tcacttcttc actaaaaggg ccaatatgca tcatctgcac acattctcct
    31081 tcttcaaaac gaaccaattt tacgtgactc gtatcaagat caggcttttt cttcttagca
    31141 acctctttcg cccattccaa cacttcttcg gtgacaaagt ccggttgtct aagaatggat
    31201 gtccaaagcc acgcatctct atcctttaaa tcaaacctct cttcagacca ccaaaaacct
    31261 tccagcggcg gtacaacaaa atccgtgtaa ccatccagac gcgtctcgcc catcttgctc
    31321 attttaatcg tgtacgcaat cgcataaaga gactgcactg ctttttgata cgcctcaccg
    31381 tccggatcac ctttcccatc caccatcaaa aaattcattt ccggaacaaa aatacgctct
    31441 ggcttccttt taggcgcgta gaatttcttc tcttcttttt taaaatcaat tttcttttca
    31501 gtcatttgaa ttcctcctcg ttcatccaat tcggcactat cctttgaaaa ttatcgtgac
    31561 tagcgaccgt ctttgctgca taatccatca actttttaaa attacgagat tcattttttg
    31621 ctgcccaatt aacagccgaa gtaatatgca tcgccgtgta aagcgcgtaa agattccaaa
    31681 aatccgtaac ttcttcttta tcaatatagc ctaaaatatt tcctcgtgca aaaggtatac
    31741 tgacctctgt tgtaaaaaag ccgattttag ctagatcaaa taaaggatcg ccgaactcta
    31801 accgattaaa atcaattagc cccacaaact ttttgttgtt taaaataata ttcgctggat
    31861 gaaaatctcc atgttgtaaa caaatcggtc tattttttaa tctagctata ttctcattaa
    31921 caaacttttc ggtgtctgtt aaaaaaaaag ctgttatttc taattctttt aattccttca
    31981 cttttcgttc aaatttaacc gtttgaaaat ccaaccagtt catttttggt atagcaagcg
    32041 gaattttatg aacttctcgt aaaatttccc ctgctgaaaa accagctttt aactgttctg
    32101 aatgagataa acgggtcatg ccaatttctg cgtcttcgcc tcgcaaataa ctaataatca
    32161 tatagccttc tctttcgata aagccgaaat catatgcttt tggaacaaat ggagtttgag
    32221 aatctaatgc ttggattatt ttaaactctt gctcccgttc ttgaagtaaa tctataggaa
    32281 aaacacgaac aaggtaagtt tcatccacct ggtatttcct atcaacagaa aagcctttgt
    32341 ttatttccga aatcactttc gcattatgca acatttttag ttgtgtcaca tccataatca
    32401 gctctcctcc tataaattca ctattcttca ttatacaaga atacgcttac ttttttccaa
    32461 ttatcttcgt agaatttgtt gacaaaataa cagaatcaat attataatta gttttgctac
    32521 gcatacgcgg tcgtggcgga atcggcagac gcgctaggtt gagggcctag tggggtaaaa
    32581 cccgtggagg ttcaagtcct ctcggccgca tcaataaaaa aattccaagg ttagaagcta
    32641 accttggaat ttttttgtat ttttaatatc ttctataaac aaataacccg ctaactacga
    32701 caataagcaa tcctataaaa attgttgagc tatttgaact atcgcccgtt tgtggtagag
    32761 cagtaatttt tgtcgtttct ccacttacct tcaccactgt acttcccttt gttggagtcg
    32821 gttttttagg taccattatt ttattatcac taaaagtaat attaatagtt ttttgagggt
    32881 taaatggtat cgttacgcga atttctttgg ttgatttttc aaagccaggt ggtgctgttg
    32941 cttccgttat gacataagtt ccgggttgta agttttcagc aagagcataa cctttactat
    33001 ttgtagttac tttttttaat gtcgttccat ctgttgactt tacgtcgaaa acggcatttg
    33061 ctagaccttt tttattcgct tcatcttgtt taaaaatagt aattgatcct gttttctcaa
    33121 cgttttgaaa agtgagtttg acaggatttg tatcgccgta cgtgatagtg aatgtttttg
    33181 gtgttgggtt cttctgataa ccaagaggtg ctgtaacttc ggttgctgta tacttccctg
    33241 gtgacagccc ttccgctgtc cctgtaccat tttgaccagt cgttattttc gccacttctg
    33301 attgagaatt atctttaatg gcataaaccg ctccactcag cgccttatct cctgaaaatt
    33361 tttgaatttc cactttacca ttcgtcgtta ttcccgcatc catatcaaaa ttctcacttt
    33421 ttaaattagg tacatttact gaagctatcc ctgttttatc tggcttggaa ttaagcgtcg
    33481 tatcattgcc ttgatttgct tttgaaaaaa taaaatcatt attcggtagg gtaaatttca
    33541 cttgatagtc ccccggcaaa acatctgtga ataaataaga gccgatatta ttcgtggtcg
    33601 cactttcttt aaacacacca tctttcgtta ataaatctac ctttacgaaa ggagcaggtt
    33661 cttcgctatc ttgttgaata ccatccccat taaaatcgta ccaaacaaca tcgccaattt
    33721 ttgcgccatt tacattaata tacaactgaa tatcatccaa aaaatttccg ctggtaagtg
    33781 agccacttgc tgttgaaata ggattgaaag ttagccttgt gatagtctgt ccttcaggca
    33841 ctatataatt cccttcaaaa ctcccccatg tttctccatc agaaactcgc gacacttcgg
    33901 tttgactttc tggtgagcca ataagtaaat cagccgtgtc tacccccatg cgcccccggt
    33961 gtgagaactt ccaagttaaa ttggaacctg ggattgtccg aatgtcttga taaactggac
    34021 caataccatc cgagtttaat tcaataaaat tgtttccaga aaaagcaggc acattgtatc
    34081 cattaccatt ttgccatact tcaatattcc cagttggatt agttgttccc caggcctcta
    34141 cacctttttg atttacttgc caaacatttg tcgtaccagc atctacacca taatcctcga
    34201 tatcaacatc ttcaaaatca ttatttttaa tggcccattt taattgccaa ccatttgaag
    34261 atgttggaga agcttgcact ttttcagaag tgctcccaat aataagtaag acaattagaa
    34321 taaacaaact acctattaat tttttttgca tgctttctcc ccctttttcg ccctaaacct
    34381 aacaccttta attacccgca aaaaagcaaa agaaaacagc cagtataaca actagctgtt
    34441 tctaatatta agacaaaata tcgtatgcca ttttatattt cgttgatttg gcgaaatgtt
    34501 tacttgcatg ctttttcact cgttcaatta atgctggatc atttgatgcg ttaatttttt
    34561 tcagtaattg tatcattttc ttttcataac ttacttgctc atcctgttga tataaaagca
    34621 atatttcggt gtattccata aagtaattca gttcttgtac tcgctcaact actgtattca
    34681 tcagccccat taatgaagtt gcttcttcaa caaaaccttt ttccgcaaaa ataaccatca
    34741 gttctgttat aacaaggtaa tcgttgttgt taaagcttat attagtcgtt ttgtaggcca
    34801 ttatttcttt atacaaacag gttatttttt catgaaatag cgtctcattt ccctcaatat
    34861 tttcaatttc tgccattttt aactgaacga cgaaataata gattttttta gcttctggat
    34921 atttggaaaa gtacttttgt gcttgtttaa atctgtattt tgcctcacca ataaagccaa
    34981 tttgaaaata aatgtaaccg tagaaataaa gaatagagac aaaacgttcc tgctcttcat
    35041 cctttattaa atcccacgct tgctggatat gtccaagtgc aggttcataa atactttggc
    35101 aaatataatt aatgcagatg cacacatgaa aaacagtgag aaaattttta ttatcagtga
    35161 gagcaacaca cttttcccag tactccactg ctaattgata attacacgtt gcatgagaat
    35221 gttttactgc ctgaccgtaa taatagtagg aaagcaattg gggcgggaaa gcattttcca
    35281 ctcgtttttc tgcgttcttt aaatatttag cttccacttc ttccgctctt gaaaatttcc
    35341 aagtcttgta ataaaatgcc acctgtaaac aataaaagct aagttcgaca gctggtgatt
    35401 cgtgctgcag ctctacattt tccgctattt tctttaatct actttctatt tctttaggat
    35461 tagaacaaac caatagttta aaaatctcat ccaattcttt caaaagtgct ctattctctt
    35521 catcttcgct catcaataac acttcttccg gtatttctaa ccttcttgct atgtgtatca
    35581 acgtttccaa agaagcaact ttaataccat tttctatatt tgctaaataa ggcacagaga
    35641 taattccttg cgctacgtct tttaatgtca gctgtttctc tttacgaata tttttaattc
    35701 gcaaaccgat taagttcatg atgtcaccgc cgttttttca atattttcct cttaattata
    35761 aacatttcga aatggaaaac aactactttt tccagctact tttttgcttt catttttata
    35821 ttttctaaaa aagcttgtta aattagcttt tttaaactac taacctaaag cgttcgccct
    35881 tacatagaaa acgttttaga tcaaaaaaag catgattgct cttggaccta aaacgttttg
    35941 ttatatttgc tcctgtatag ctattttgaa aaaagcttca ctaatttgcc ataatcatcg
    36001 ctgtggattt tttgttgtcc ggcataggtg aaataaaaat tttccttttg aattcctaaa
    36061 tttcacctaa taccgacatt ttattacttc ttagtttgct cccacatgca aactactccg
    36121 ttaataaaac aacaagtttt atagactcta tcccttatcg aatctataaa ttttctctac
    36181 acattccctt ttaaaacctg tctacgcaaa aacggaaacg tagattttca ttttaccatt
    36241 caaattcaat taatctctaa aaaggaaaat tcatcttact tccacctttt tca
//
LOCUS       DABQVC010000004        34375 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.004,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000004 DABQVC010000000
VERSION     DABQVC010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 34375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34375
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.004"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            192..1061
                     /locus_tag="IBJ56_000118"
     CDS             192..1061
                     /locus_tag="IBJ56_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4969 domain-containing protein"
                     /protein_id="HAM3416404.1"
                     /translation="MKKRGLLLVSILMFFSFLTVACGSSEDNEESGEKSTKEIELTVD
                     DPILPTDENGEATIEGTVDPKSKLTIDGKAVKKDDSGRFTYTYSLTNDNVAEVDVKLL
                     AVRKNYKDEKYTITITNNSKSYNDNMAKQETIQKEEAAKAEKERKEAEEKAKQEEEAA
                     AAKAATTDENTPSDDTVYGTLASKDTLTKEGDAFYKDEELDVLYSTVENDEIFQVLIQ
                     LGDESTIRKDLDKNHLTELARGYMESDATLIQTVSDESFVYESPSINKTYTVDYMLND
                     EGYVIAVYVTQAM"
     gene            complement(1202..1594)
                     /gene="rpsI"
                     /locus_tag="IBJ56_000119"
     CDS             complement(1202..1594)
                     /gene="rpsI"
                     /locus_tag="IBJ56_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002009728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HAM3416405.1"
                     /translation="MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL
                     REVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAG
                     LLTRDPRMKERKKYGLKGARRAPQFSKR"
     gene            complement(1616..2053)
                     /gene="rplM"
                     /locus_tag="IBJ56_000120"
     CDS             complement(1616..2053)
                     /gene="rplM"
                     /locus_tag="IBJ56_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HAM3416406.1"
                     /translation="MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQ
                     FTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLL
                     ELSIKGMLPKNSLGRQLFKKLHVYGGAEHEHAAQQPEVYELRG"
     gene            complement(2248..2994)
                     /gene="truA"
                     /locus_tag="IBJ56_000121"
     CDS             complement(2248..2994)
                     /gene="truA"
                     /locus_tag="IBJ56_000121"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HAM3416407.1"
                     /translation="MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTV
                     RIKASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHA
                     RFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA
                     RTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQDRISPDDI
                     SEALLARDRQKLISKTAPPQGLYLWRVDYE"
     gene            complement(3000..3797)
                     /locus_tag="IBJ56_000122"
     CDS             complement(3000..3797)
                     /locus_tag="IBJ56_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HAM3416408.1"
                     /translation="MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLT
                     YALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQI
                     TTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALM
                     LSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAED
                     LAIAMEARGYRGGKGRTRFRLLRWRFADTLLLISLVVLSGLLFWLRS"
     gene            complement(3800..4666)
                     /locus_tag="IBJ56_000123"
     CDS             complement(3800..4666)
                     /locus_tag="IBJ56_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HAM3416409.1"
                     /translation="MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGS
                     GKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEET
                     VEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVL
                     AMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVL
                     MKAGTVLQIGTPREVFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELT
                     TEMAPYLAKGGA"
     gene            complement(4642..5481)
                     /locus_tag="IBJ56_000124"
     CDS             complement(4642..5481)
                     /locus_tag="IBJ56_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HAM3416410.1"
                     /translation="MAESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGS
                     GKSTIAKLLNGLLFPEDGLIKIGHFVLSEKNIWDIRRQVGMVFQNPDNQFVGATVQDD
                     VAFGLENHGVPHDTMVERVESALNEVGMQSYALHEPARLSGGQKQRVAIAGVLALQPD
                     VIILDEATSMLDPRGRAEVMETIRIMREQEDITVISITHDLDEVLFADRVIVMNNGEV
                     HSEGTPQEIFEQADAMREIGLGVPFIIELQEKLVAGGFETGSTVLSEGALLDQLWKLN
                     SNN"
     gene            5612..6274
                     /locus_tag="IBJ56_000125"
     CDS             5612..6274
                     /locus_tag="IBJ56_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HAM3416411.1"
                     /translation="MLVDFILRLVVAGLLGAIIGLDREIRAKEAGFRTHFLVSLGSAL
                     IMIVSQYGFSEIATMQNVSFDPSRVAAQVVSGIGFIGAGTIIIQKKFVRGLTTAAGLW
                     ATAGIGLAIGAGMYWVGIAATLLTLIGLEFLSIVFKSFAFHTTAIIYSTDKQENLVKV
                     TDKIQQNKQQIVSYSSEKELIGESLFIRVNIVVKTKNKNDEYELFHFIQTLPNVTVEK
                     ME"
     gene            6395..7285
                     /locus_tag="IBJ56_000126"
     CDS             6395..7285
                     /locus_tag="IBJ56_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HAM3416412.1"
                     /translation="MKNFVTSERAVFKMDKSAEPAITVKDGSVVKIKTKDYFNGQIQN
                     KQLQYGDLDWKQFSPTTGPIYIEEARSGDLLAVTIEKIELLGTEVFLLNGPNVGITDD
                     LLTSNFTRCYKVRENRIMYSDEIHIPITKTIGLLRTEGLLTSKSPANNDGLLDSSEIT
                     EGATIFLPVEKQGASLYIGNVRATAGFGKTTTTSAEAPAEITLRLQILKNRTAPTPTI
                     IHDNHLICLASDLTIEKAAKKAMQNMITLLTESDKMTTEDAMFLLSLQAEFQVCNMGK
                     SNITTSIKLPLDYFPEMPFL"
     gene            complement(7317..8411)
                     /locus_tag="IBJ56_000127"
     CDS             complement(7317..8411)
                     /locus_tag="IBJ56_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HAM3416413.1"
                     /translation="MRSLTNAEIAHNRLLNSGLLQSKFSSAEDATRALFGIQSQYQQF
                     GEISLFNRVPNLTKENLQMAYDDKGIIKIWGQRMTVHMYTPDDWFYVHDVYANKNNWL
                     RKHADSLGRDLDEILVQMEELLLREDKVSKESFAALLGNEAKELMTWGGVFIQGSLDG
                     KLFCVPESPKTKFYSHRNQIDSEREDAWITNKRSKTGLETMIDRYFSAFGPATIQDFK
                     HWSGLRNSDYIETLEKLLENYICYIGEDGKNYYSKAKTQENVEMGSPLLLGKFDPLFV
                     SYAKKNWLASEKETSLIWRTAGQIEAVLIINAQFFGTWRYKISGDKIVFQFYLSKKLT
                     KKGQKLVEKEAIKLAEFLLKNYQGSIFEQI"
     gene            complement(8626..9033)
                     /gene="rplQ"
                     /locus_tag="IBJ56_000128"
     CDS             complement(8626..9033)
                     /gene="rplQ"
                     /locus_tag="IBJ56_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HAM3416414.1"
                     /translation="MGYRKLGRTSSQRKALLRDLATDLIVFERIETTEARAKEIRKVV
                     EKLITSGKKGDLHARRQAAAFIRHEVVEVVQVDAKGKDGSTVKKNRPVYALQKLFDDV
                     APRYAERQGGYTRILKKGPRRGDGAPMVIIELV"
     gene            complement(9050..9994)
                     /locus_tag="IBJ56_000129"
     CDS             complement(9050..9994)
                     /locus_tag="IBJ56_000129"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003178382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HAM3416415.1"
                     /translation="MIEIEKPKIETIEISDDAKYGKFVVEPLERGYGTTLGNSLRRIL
                     LSSLPGAAVTSIQIDGALHEFSVIEGVVEDVTTMILNIKKLALKIYSDEEKTLEIDMQ
                     GPGVVTAADINYDSDVEILNPDLHIATLSDNAKFHVRLNATRGRGYTPADQNKRENMP
                     IGVLPVDSIFSPVIRVNYQVENTRVGQSTNYDKLTFDVLTDGSISPEEAVSLGAKILS
                     EHLSIFVNLTDEAQKAEIMIEKEESHKEKVLEMTIEELDLSVRSYNCLKRAGINTVQE
                     LADKSEDDMMKVRNLGRKSLEEVKVKLADLGLSLRNEN"
     gene            complement(10104..10493)
                     /gene="rpsK"
                     /locus_tag="IBJ56_000130"
     CDS             complement(10104..10493)
                     /gene="rpsK"
                     /locus_tag="IBJ56_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017795137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HAM3416416.1"
                     /translation="MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVMITDTHGNALAW
                     SSAGSLGFKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPGSGREAAIRALQA
                     AGLEVTAIKDVTPVPHNGCRPPKRRRV"
     gene            complement(10516..10881)
                     /gene="rpsM"
                     /locus_tag="IBJ56_000131"
     CDS             complement(10516..10881)
                     /gene="rpsM"
                     /locus_tag="IBJ56_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HAM3416417.1"
                     /translation="MARIAGVDVPREKRIVISLTYIYGIGKQTAKEVLAEAGVSEDTR
                     TRDLTEEELGKIREILDRIKVEGDLRREVNLNIKRLIEIGSYRGMRHRRGLPVRGQNT
                     KNNARTRKGPSKTVAGKKK"
     gene            complement(10900..11013)
                     /gene="rpmJ"
                     /locus_tag="IBJ56_000132"
     CDS             complement(10900..11013)
                     /gene="rpmJ"
                     /locus_tag="IBJ56_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005398614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HAM3416418.1"
                     /translation="MKVRPSVKPMCEKCKVIRRKGKVMVICENPKHKQKQG"
     gene            complement(11117..11335)
                     /gene="infA"
                     /locus_tag="IBJ56_000133"
     CDS             complement(11117..11335)
                     /gene="infA"
                     /locus_tag="IBJ56_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HAM3416419.1"
                     /translation="MAKEDVIEVEGVVQETLPNAMFNVELENGHKVLATVSGKIRMHY
                     IRILPGDKVTVELSPYDLTRGRITYRFK"
     gene            complement(11722..12369)
                     /locus_tag="IBJ56_000134"
     CDS             complement(11722..12369)
                     /locus_tag="IBJ56_000134"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HAM3416420.1"
                     /translation="MKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTE
                     LGKKAKSFMDNGDLVPDEVTNGIVRERLAEDDAKNGFLLDGFPRTVEQAEELENILND
                     LGTELDAVINIEVDKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQR
                     DDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQDIKDVFVDVEKILASF"
     gene            complement(12429..13724)
                     /gene="secY"
                     /locus_tag="IBJ56_000135"
     CDS             complement(12429..13724)
                     /gene="secY"
                     /locus_tag="IBJ56_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HAM3416421.1"
                     /translation="MFQTLVNFFKVADIRKKILFTLAMLVIFRIGTFVPVPGVNAAAL
                     QSSMDGGILGFLNTFNGGALKNFSIFAMGVMPYITSSIIVQLLQMDVVPKLTEWSKQG
                     EMGRKKLNQLTRYMTIGLGLVEAFGMAYGFNRMSSAGLVIEPSIGRYAIIAIVLTTGT
                     MFLMWLGEQITVKGVGNGVSIIIFAGIVARIPDGVRQLYVSQIENAGDQLFLHVLTLV
                     GVGIAILAIVVAVIFFQQALRKIPIQYSKRVAGAKQSGAQATHLPLKLNSAGVIPVIF
                     ASAFIITPQTILTFFDQSNDVVKVLKDVFDYTKPIGMILYVALIVAFTYFYAFIQVNP
                     EKVADNLKKQGGYIPSKRPGRETQAYLTSVLYRLTFVGAIFLSAVAILPTIGTTVFSL
                     PQSLAVGGTSLLIVIGVALDTTKQLEGQLVKRNYRGFIK"
     gene            complement(13724..14164)
                     /gene="rplO"
                     /locus_tag="IBJ56_000136"
     CDS             complement(13724..14164)
                     /gene="rplO"
                     /locus_tag="IBJ56_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HAM3416422.1"
                     /translation="MKLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGG
                     GVRLGFEGGQLPLFRRIPKRGFTNINRKEFAIVNLDVLNRFEDGTEVTPELLVETGII
                     RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI"
     gene            complement(14220..14399)
                     /gene="rpmD"
                     /locus_tag="IBJ56_000137"
     CDS             complement(14220..14399)
                     /gene="rpmD"
                     /locus_tag="IBJ56_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HAM3416423.1"
                     /translation="MAKLEITLKRSLIGRPQPQRKTVQALGLGKTNSVVVKEDNPAIR
                     GMITKVSHLVDVKEV"
     gene            complement(14416..14919)
                     /gene="rpsE"
                     /locus_tag="IBJ56_000138"
     CDS             complement(14416..14919)
                     /gene="rpsE"
                     /locus_tag="IBJ56_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HAM3416424.1"
                     /translation="MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKN
                     GHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDTTIPHTVVGHFGGGEILLKPASA
                     GSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGK
                     TVEELLG"
     gene            complement(14941..15300)
                     /gene="rplR"
                     /locus_tag="IBJ56_000139"
     CDS             complement(14941..15300)
                     /gene="rplR"
                     /locus_tag="IBJ56_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HAM3416425.1"
                     /translation="MITKIDKNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQI
                     IDDVNGVTLASASNLDKDFGSAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYH
                     GRVKALAEAARENGLEF"
     gene            complement(15340..15876)
                     /gene="rplF"
                     /locus_tag="IBJ56_000140"
     CDS             complement(15340..15876)
                     /gene="rplF"
                     /locus_tag="IBJ56_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HAM3416426.1"
                     /translation="MSRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIN
                     IEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDK
                     LVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGK
                     GIRYEGEHVRRKEGKTGK"
     gene            complement(15907..16305)
                     /gene="rpsH"
                     /locus_tag="IBJ56_000141"
     CDS             complement(15907..16305)
                     /gene="rpsH"
                     /locus_tag="IBJ56_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HAM3416427.1"
                     /translation="MVMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREG
                     FIRDVEYIEDDNAGTIRVFLKYGATGERVITGLKRISKPGLRVYAKSTEVPKVLNGLG
                     IAIVSTSQGVLTDKEARAKQVGGEVLAYVW"
     gene            complement(16336..16521)
                     /locus_tag="IBJ56_000142"
     CDS             complement(16336..16521)
                     /locus_tag="IBJ56_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HAM3416428.1"
                     /translation="MAKKSMIAKQKRTPKYAVQAYTRCERCGRPHSVIRKFKLCRICF
                     RELAYKGQIPGVKKASW"
     gene            complement(16553..17092)
                     /gene="rplE"
                     /locus_tag="IBJ56_000143"
     CDS             complement(16553..17092)
                     /gene="rplE"
                     /locus_tag="IBJ56_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017434009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HAM3416429.1"
                     /translation="MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDAT
                     ANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDK
                     LVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTA
                     KSDEESHELLTQLGMPFQK"
     gene            complement(17119..17430)
                     /gene="rplX"
                     /locus_tag="IBJ56_000144"
     CDS             complement(17119..17430)
                     /gene="rplX"
                     /locus_tag="IBJ56_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HAM3416430.1"
                     /translation="MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKH
                     TKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGDKKVRVAKKSGEVID
                     K"
     gene            complement(17468..17836)
                     /gene="rplN"
                     /locus_tag="IBJ56_000145"
     CDS             complement(17468..17836)
                     /gene="rplN"
                     /locus_tag="IBJ56_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HAM3416431.1"
                     /translation="MIQQESRMKVADNSGAREVLTIKVLGGSGRKTANIGDVVVCTVK
                     QATPGGVVKKGEVVKAVIVRTKSGARRQDGSYIKFDENACVIIRDDKSPRGTRIFGPV
                     ARELRENNFMKIVSLAPEVL"
     gene            complement(17916..18179)
                     /gene="rpsQ"
                     /locus_tag="IBJ56_000146"
     CDS             complement(17916..18179)
                     /gene="rpsQ"
                     /locus_tag="IBJ56_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011064531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HAM3416432.1"
                     /translation="MADRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSK
                     KFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVII"
     gene            complement(18207..18398)
                     /gene="rpmC"
                     /locus_tag="IBJ56_000147"
     CDS             complement(18207..18398)
                     /gene="rpmC"
                     /locus_tag="IBJ56_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HAM3416433.1"
                     /translation="MKANDIRDLSTTEIQDQEKALKEELFNLRFQLATGQLENTARIR
                     EVRKAIARMKTIVRERELA"
     gene            complement(18388..18822)
                     /gene="rplP"
                     /locus_tag="IBJ56_000148"
     CDS             complement(18388..18822)
                     /gene="rplP"
                     /locus_tag="IBJ56_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HAM3416434.1"
                     /translation="MLVPKRVKYRREFRGNMRGRAKGGTEVAFGEYGLQAVEASWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKPIGVRMGKGKGAPEGWVSPVKRGKI
                     MFEIAGVPEDVAREALRLAAHKLPVKTKIVKREEIGGEANES"
     gene            complement(18825..19481)
                     /gene="rpsC"
                     /locus_tag="IBJ56_000149"
     CDS             complement(18825..19481)
                     /gene="rpsC"
                     /locus_tag="IBJ56_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HAM3416435.1"
                     /translation="MGQKVHPIGMRIGVIRDWDSKWYAEKDYADFLHEDLRIRDYVAK
                     RLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKNLNELTQKRVHINI
                     VEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKTQVSGRLGGAD
                     IARAEHYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPTKKNNVEGGK
                     "
     gene            complement(19485..19841)
                     /gene="rplV"
                     /locus_tag="IBJ56_000150"
     CDS             complement(19485..19841)
                     /gene="rplV"
                     /locus_tag="IBJ56_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HAM3416436.1"
                     /translation="MASEVTSAKAVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYT
                     PRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAFVDEGPTLKRFRPRAQGRASAIN
                     KRTSHITVVVSEVKEG"
     gene            complement(19862..20140)
                     /gene="rpsS"
                     /locus_tag="IBJ56_000151"
     CDS             complement(19862..20140)
                     /gene="rpsS"
                     /locus_tag="IBJ56_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HAM3416437.1"
                     /translation="MGRSLKKGPFVDDHLMKKVEAAAESEKKQVIKTWSRRSTIFPTF
                     VGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR"
     gene            complement(20228..21061)
                     /gene="rplB"
                     /locus_tag="IBJ56_000152"
     CDS             complement(20228..21061)
                     /gene="rplB"
                     /locus_tag="IBJ56_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HAM3416438.1"
                     /translation="MAIKKYKPTTNGRRHMTSSDFAEITTSTPEKSLLRPLKKKAGRN
                     NQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADGEKR
                     YIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGT
                     SAQVLGKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRP
                     TVRGSVMNPNDHPHGGGEGKAPIGRKSPMSPWGKPTLGYKTRKKNNNSDKFIVRRRKK
                     K"
     gene            complement(21102..21386)
                     /gene="rplW"
                     /locus_tag="IBJ56_000153"
     CDS             complement(21102..21386)
                     /gene="rplW"
                     /locus_tag="IBJ56_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HAM3416439.1"
                     /translation="MDARDIIKRPVVTEESTSILDDKKYTFEVDTRATKTQVKYAVEE
                     IFDVKVAKVNVMNYKGKLKRMGRYAGYTNKRRKAIVTVTADSKEIQFFEV"
     gene            complement(21386..22009)
                     /gene="rplD"
                     /locus_tag="IBJ56_000154"
     CDS             complement(21386..22009)
                     /gene="rplD"
                     /locus_tag="IBJ56_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HAM3416440.1"
                     /translation="MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASL
                     RQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLP
                     KKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGES
                     ENVELSARNLQGITVIPAESISVLEVAKHDKLIITKAAVEKVEEVLA"
     gene            complement(22035..22664)
                     /gene="rplC"
                     /locus_tag="IBJ56_000155"
     CDS             complement(22035..22664)
                     /gene="rplC"
                     /locus_tag="IBJ56_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HAM3416441.1"
                     /translation="MTKGILGRKVGMTQVFTENGELIPVTVIEAAQNVVLQKKTVETD
                     GYEAVQIGFEDKRAILSNKPEQGHVAKANTTPKRFIREFRDVNLDEYEIGAEVKVDVF
                     AEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKLL
                     PGRMGGEQITIQNLEIVKVDVEKNVLLVKGNVPGAKKALVQIKTATKAK"
     gene            complement(22699..23007)
                     /gene="rpsJ"
                     /locus_tag="IBJ56_000156"
     CDS             complement(22699..23007)
                     /gene="rpsJ"
                     /locus_tag="IBJ56_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006784429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HAM3416442.1"
                     /translation="MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPT
                     EKSIYTVLRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDSLMRLDLPSGVDIEIKL
                     "
     gene            complement(23369..24169)
                     /locus_tag="IBJ56_000157"
     CDS             complement(23369..24169)
                     /locus_tag="IBJ56_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HAM3416443.1"
                     /translation="MIEKLILGRFVPGESLIHGLDARTKLLAGFYYIGILFLANNWWT
                     YALMVLFTLMVIQMTGIKLKVFIKGVKPLIWLILFTVVMQILFASGGTIYFDWGPFTI
                     SSFGLLNGVFVFLRFVLIIMMSTVITLTTTPMNLTDAIAYILRPFAVLKVPVNDIALM
                     ISVALRFIPTLMGETDKIMKAQRARGVDFGEGNLFEQMKVVVPIFIPLFVSSFNRAEE
                     LADAMEARGYQGGEGRTRFRILHWHFGDLIAACVMILLTAGLVILRTS"
     gene            complement(24190..25149)
                     /gene="menA"
                     /locus_tag="IBJ56_000158"
     CDS             complement(24190..25149)
                     /gene="menA"
                     /locus_tag="IBJ56_000158"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HAM3416444.1"
                     /translation="MSIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPVNTLIF
                     FGSMLIFDLTTTAINNYMDYRKATDNHDYDYRTTSNVIGQEQIPVRTVIITIFLMFFI
                     ATGLGVWLVFRTDLLVLLIGFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFL
                     AVYVNAYDAGIANLLWQGETVTIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDE
                     DIRNHRYTLPYYIGRKMGVLLFNALYYASFLAVVVSVAINFLHPIMLLSLITIYPVYR
                     NLVKFNKEQVKSKTFVIGIRNFVLINATLTILMAVSVVLQQLA"
     gene            complement(25231..26313)
                     /locus_tag="IBJ56_000159"
     CDS             complement(25231..26313)
                     /locus_tag="IBJ56_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HAM3416445.1"
                     /translation="MKKWKIIISVIILALVVSACGNSSKETKSEPSDSKKLMDQPYSK
                     TDFLMGTVVTLKIYDKGKEDVLDKGFDRIKDLAAKITTSDSEKTSEVDKINEQAGKKP
                     VKVSKDVYYLIQEGLKYSENSGGSFDITIGPLTSLWHIGFSDARKPSQAEIDAVLPLI
                     NYKDVKMNDKDQTVYLEKEGMELDLGAIAKGFITDETLKVFKENKVTTSIIDLGGNIY
                     VQGNNPNGNKWNVGIQDPFSPRGSVIGKLPESNMSIVTSGIYERYLEVDGKTYHHILD
                     PKTGYPFDNDIAGVSIVSKKSIDGDGLSTATFSKGVKGGMDYIEQFEGVDAIFISKEK
                     KVYETSGLKGQFELTDKDFQMDTLKK"
     gene            complement(26477..27376)
                     /locus_tag="IBJ56_000160"
     CDS             complement(26477..27376)
                     /locus_tag="IBJ56_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HAM3416446.1"
                     /translation="MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETK
                     KTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYDYKNKDGKLKSEDA
                     DYEKAMKDKVGTGPQEYLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAA
                     QKADTTTISINNLAKMEDGTYKLEEQNYAHGYRVVFSMDVKDGKITKSDYNYVDKDGK
                     LKSDDADYEKNMKAKSGTGPKEYIPALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAA
                     QLQNAAQNGNTDTIKVYNLVEAE"
     gene            27824..29710
                     /locus_tag="IBJ56_000161"
     CDS             27824..29710
                     /locus_tag="IBJ56_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAM3416447.1"
                     /translation="MPEKNIVLIGAGYAGVHAAKKLAKKYKKDKDVNITLIDRHSYHT
                     MMTELHEVAGGRVEPTAIQYDLRRLFNRTKVNLVTDNVTHVDHDKKVVTTEHGSYPFD
                     YLVLGMGGEPNDFGTPGVGENGFTLWSWEDSVKLRNHIEETVTKASREQDVEKRKAML
                     TFVVCGSGFTGIEMVGELLEWKDRLAKDNKIDASEIKLVVVEAAPTILNMLERRDADK
                     AERYMVKKGIEIMKNAAIVEVKPESIVLKSGEELPTSTLIWTAGVRANSDTKDYGMES
                     ARAGRLKVNQYMEAEGLKDVYVVGDLAYFEDEEGKPTPQIVEGAEQTALTAAKSIIVE
                     MSGTGEKEPFQGKYHGVMVSIGAKYGVAHLGGMHLSGWFAILMKHMVNLYYFFGIRSG
                     YYMWQYIMHEFFHIKDHRNIFRGWTSRYGNVLWVLPLRVYLGWFWIDEALSKIYGETT
                     WDKVSITNLKPLFNGIGSDSWLTATTSKMPFEWLQTAATSGASQAAGDAAGAAATNVT
                     TPILSHMPGWFQWIMELLMPNLDVALVMQKVVPFVELAIGLAMVVGLFTWLVSIGSAG
                     FLVMFTLSAMLGWDKFWALPASIALLNGAGRTFGLDYWAVPWFQKHLGHWWYGKPRSV
                     YRDK"
     gene            29886..30320
                     /gene="eetA"
                     /locus_tag="IBJ56_000162"
     CDS             29886..30320
                     /gene="eetA"
                     /locus_tag="IBJ56_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin-based extracellular electron transfer
                     system protein EetA"
                     /protein_id="HAM3416448.1"
                     /translation="MKKYLSMVKRWDIIIILSLCILSFLPIAIFSYVKANEPAPANGK
                     KELVAVISVDSKEYKTVTLTGHKGTESFDVKQPDGHTNTIEVSGEEIRISKANCNDQV
                     CVRTGAIDKQGDTVVCLPHKLVIEVKASDGSSGDSDDPIISS"
     gene            30353..30895
                     /gene="eetB"
                     /locus_tag="IBJ56_000163"
     CDS             30353..30895
                     /gene="eetB"
                     /locus_tag="IBJ56_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin-based extracellular electron transfer
                     system protein EetB"
                     /protein_id="HAM3416449.1"
                     /translation="MTKNRRLVYIALLAAQAVVISLLERAIPFPFAFAPGAKLGLANI
                     ITCISLYTLSAKDTFMIICIRLVLSTLLGGTISTFMYSAAGAILSFLGMWLVQQLGPK
                     RVSIIGVSVTGGILHNVGQLVIASWIAGTWSVMLYLPVLSFIGILSGIAVGIAANYLL
                     KNVQTLRMFADAKQSQAAQK"
     gene            30917..31897
                     /locus_tag="IBJ56_000164"
     CDS             30917..31897
                     /locus_tag="IBJ56_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HAM3416450.1"
                     /translation="MQLHAMWDEYPALSKDLQEVLQTIEKNIQIRDKHVEQNVKDLIH
                     AGGKLLRPAFALLSAQAGPDYDKERAVSIAAALEVLHMATLIHDDVVDDSPLRRGIPT
                     IHSKYGRNYAVYTGDYLFCICFKILSAHASSVENIEFNSKNIEKILMGELDQMRTSYK
                     MNVTVREYLTRISGKTAQLFALSCYSGATGSKATRMTVAKCYNIGHYLGMAFQIIDDV
                     LDYTSTDEGLGKPVLNDMKQGIYSLPLIYAMKGHLAEFEPLLSQKLDMTDEASEQVLA
                     LISKYKGVEQAFKLANKYTNKALREIKKLPAGAYRDDMYHLTKNILDRDI"
     gene            31987..33318
                     /locus_tag="IBJ56_000165"
     CDS             31987..33318
                     /locus_tag="IBJ56_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HAM3416451.1"
                     /translation="MIRFFKIVTPILLSISLVACSSASGKTENITAPIEKDRNLSMVV
                     TTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVEAKKTDVLIISGDL
                     TNNGEKTSHEELAKKLTQVEKTGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTD
                     FSKIYGDFGYKDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTA
                     GTLDWIKESSALAKKNGAKLVPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGSMDF
                     SLSGHIHTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDM
                     EAWAKAQGSTDENLLNFNQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTM
                     GLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP"
     gene            complement(33365..34351)
                     /locus_tag="IBJ56_000166"
     CDS             complement(33365..34351)
                     /locus_tag="IBJ56_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4003 domain-containing protein"
                     /protein_id="HAM3416452.1"
                     /translation="MDSAYVFDSEQATKLLMKNYELVKTSGVSFIDKRIRFLIARLFA
                     GNNEVVDPEEFSEINKEIKRQLGMFTALNGNVRASLVGLLMANDNASRESVQQVIANY
                     NTLIQAGFQRTEYTYFAAYLLLESENPKKTARKAKTIHQLFKKDHPFLTKSEDVTTAV
                     FLANLPEENTTKLAEITEYYFQEFAAKGFRKNDSLQFLATTGTLLYGEKDSKFIRRVD
                     NIVEELRQKGIKVKPLHYSSIGILAFVMDARKIDSGLVNLIDELQQQPGLRFGREFVT
                     ALAISLYTEKQSGQMSKEQLEGLMVNVHILIAMEQAAAVSAAAAASAAAASS"
BASE COUNT         9982 a         7103 c         6253 g        11037 t
ORIGIN      
        1 ccggtagctt cggtggcttg tgtttggttt tcggtgtttg agcatgctgt tatggaaagt
       61 aatgcgcaca aaataaaaat gattgaatta acaaatgatc atatatggca cattttaaaa
      121 aaagcaaggt tattcatgtt ataatagctg ttctgtatat ttatatctaa tcacaaaagg
      181 agccggagaa gatgaaaaaa agaggtttat tgttggtaag tattttaatg tttttcagtt
      241 ttttgacagt agcatgtggg agttctgaag acaatgaaga aagtggggag aaaagtacga
      301 aagaaattga acttaccgtt gacgacccta ttttaccaac cgatgaaaat ggtgaagcaa
      361 ctatagaggg aactgtagat cctaaatcca aattaaccat tgatggtaaa gccgtaaaaa
      421 aagatgacag cgggagattt acttatactt acagtttaac taacgataat gttgcagaag
      481 ttgatgtcaa acttctagcg gtcagaaaaa attataaaga tgaaaagtac actataacta
      541 ttactaacaa ttcaaaatca tataacgaca acatggcaaa acaagagaca atacaaaaag
      601 aagaagccgc gaaagctgaa aaggaacgta aagaagcgga ggaaaaagca aaacaagaag
      661 aagaagcagc cgctgcaaaa gctgcaacga ctgatgaaaa cacgccttcc gatgatactg
      721 tatatggcac tttagccagc aaagatactt taacaaaaga gggagatgca ttttataaag
      781 atgaagaact tgatgtactc tattctacag tagaaaacga tgaaattttt caagtgctta
      841 tacaattagg cgatgaaagt acaattcgaa aagatttaga taaaaatcat ttaacagaat
      901 tagcaagagg ttatatggaa tccgatgcca ctcttataca aactgtttct gatgaatcct
      961 ttgtttatga atctccatct ataaataaaa catatacagt agattatatg ttaaacgatg
     1021 aaggttatgt tattgcggtt tatgttacac aagcaatgtg actagaaaaa acctttaagt
     1081 tatacaactt ttaattaaaa atatactatt acaaaaaagt ccttaagggc ttttttgttt
     1141 tttatttaac tcaactaaac aaaaaaagca ccagcaaaag ctggtgcttt gaaacgacat
     1201 attaacgttt tgagaactga ggtgcacgac gcgcgccttt aagtccgtat tttttacgtt
     1261 ctttcatacg tgggtcacga gtaagtaggc cagcagattt aagtgctggg cggtactcag
     1321 gagccacttg taatagtgca cgagctacac catgacggat agcaccggct tgaccagtgt
     1381 aaccaccacc gtgaacgttt actagtacat catagttacc taaagtttct gtagctacta
     1441 aaggttgttt gataacttca cgaagagctg caaatgggat gtaatcttcc cagtctctat
     1501 tgttaataac gattttgccg tcgcctggta ctaaacgtac gcgagctaca gagcttttac
     1561 gacgaccagt tccgtaatat tgtacttgag ccacttagta ttcctccttt attaattaac
     1621 cgcgtaattc gtatacttct ggttgttgag ctgcgtgttc gtgctcagct ccaccatata
     1681 cgtgtaattt tttgaataat tgacgtccaa gagaattttt tggaagcata cctttgatag
     1741 atagttctaa taatttctca ggattgtttg tacgcatttc gcctgcagta cgagatttca
     1801 aaccgcctgg atattgagag tgacggtagt aaattttgtc agtagctttt ttaccagtaa
     1861 gaccaatctt accagcgttg atgatgatta caaagtctcc agtgtcgata tgtggagtaa
     1921 attgtggttt gttttttccg cgaagaattg aagcaacttc actggataaa cgtcctaaag
     1981 aaacaccagt agcgtcgata acgtaccatt tacgttctac ttcgccgggt ttcgccatat
     2041 aagttgtacg catgaattac cctcctaaat aaattgaaac aaattagctc ccgaaaactg
     2101 ttcctaattc ccgaaatgct attctatatt tttattgttt aaacacaaca accttccggg
     2161 gcttattgtg gggcaaacaa taccatagtc cataatacag tttttggagc aaaaagtcaa
     2221 tgcgttctgc aaaaaaacat ccaattttta ttcatagtcc actcgccata aatataaccc
     2281 ttgtggcggc gcagttttac taattaattt ttgccggtca cgtgctaata aagcctcact
     2341 aatatcatcc ggagagattc gatcttgccc tgcatcgagc aaagttcccg tcaaaattcg
     2401 caccatatta tacaaaaagc cattcccttg aaaagcaatc actaacgtct cgtcgtcctc
     2461 ttcataaaaa tcaatactat aaagcgttcg gactttagaa tcacgctccg ttctcgccga
     2521 acagaaactt gtaaaatcat gctcgccaat caggcgttta cttgccaatt tcatttttga
     2581 aatgtccagt tcatatggat aatgtagcgc aaaattccga ctaaaaggat caaaaatttt
     2641 cgtccgcttt accacataac gatattcttt tccaactgtg ccaaatctag cgtggaaatc
     2701 gtctggtact tcttccactg ttaaaaagct aatatcgaac ggagtcatga cttgcaaagc
     2761 tttttgaaat ttttcggcag tgatatcaag ttccgaatcg aaatgaataa cctgaccttt
     2821 cgcatgaaca ccagtatctg ttcttcctga tgctttaatc ctcacagttt tgcctttatg
     2881 catttttgtc agtgcttttt caatttccgc ttggaccgtc cgtgtattcg gctgcacctg
     2941 atagccataa aacccgctac catcataaga aattatcgct ttatatctcg tcatttattt
     3001 caactccgca accaaaataa taatccactt aacactacta acgaaatcag tagcaacgta
     3061 tctgcaaatc gccagcgtag taaacggaat ctcgttctcc ctttaccacc acgataaccg
     3121 cgtgcttcca ttgcaatcgc taaatcttcc gcacgtttaa acgcactaat aaaaagtggc
     3181 acaagcaacg gaataatcgc tttaatccga tcactccatt ttccactcgt aaattcaacg
     3241 ccacgagctt tttgcgcttt taaaattttc tccgtttcat ccatcaatgt tggaataaag
     3301 cgcaaagaaa tactcagcat caaagcaagt tcatgtactg gtaaatgcac taaacgaaac
     3361 ggcgctaaaa ttttctccag tccgtctgtt agttcaatcg ggcttgtcgt taatgttaaa
     3421 agtgttgtca taaaaataat gagaacaaag cgacaaaaca tcatcgctcc atttgtcagt
     3481 ccgagtgtcg ttatttgtaa aagtcctaaa tcgactaaaa ctgtcccgcc ttttgtaaaa
     3541 aagacttgaa gtaatagcgt aattaaaata agccagaaaa tcggttgtaa ccctttaata
     3601 aaaaataaaa atggcacttt cgaagttaag actaaataca aaacatacgc aaacataagc
     3661 gcataggtca gccaattgtt cgctaaaaag acaatcgcga taaacgccat aacagcagtg
     3721 attttcgcac gtgggtcaat tcgatgcaac caagagtttc ccggaatata acgtccgaga
     3781 atcattttat ccatcataat tatgccccgc ccttcgctaa ataaggcgcc atttcggttg
     3841 ttaattcatc aatggttaaa caagtttttg ttaatttcac atcaaatttg cgctcaaaaa
     3901 gtccttggaa tctcaccaca tccggtacag ataacccaag atcaaccagt tcgtctggct
     3961 tcgcgaaaac ttcacgtggc gtaccgattt gaagaaccgt cccagctttc atcaagacaa
     4021 tcttttccgc ataacgagca gcatcttcca tactgtgtgt tacaagtact gtcgtaagcc
     4081 ctttttcttt atgaagattg tagaacattt ccatgatttc ctcgcggcca tgaggatcta
     4141 gtcccgctgt tggctcatct aacacaagca cttctgggtc catcgctaaa acaccagcaa
     4201 tcgcaacccg gcgcatttgc ccaccagaaa gttcaaacgg cgaacgtgac aaaatttcct
     4261 cggtcagtcc cacttcataa atcacttttt tagcgcgtag ttttgcatct tcctcggaaa
     4321 ctccaaagtt catcggtcca aaacaaatat ccttttcgac cgtttcttca aaaagttgtg
     4381 cttctggaaa ttggaacaca atcccgactt tcttacgtaa atcacgtagt ttcttttgct
     4441 ttacgccagc aacgatttct cgatcaccaa ctgtgatttt accttctgtt ggcattaaaa
     4501 gagcgtttaa gtgttgcagc aaagttgatt tccctgagcc agtatgacca ataattgcag
     4561 aatagctacc agaatcaaaa gaaacattca catcaagtaa tgctcgcttt tcaaaagggc
     4621 tatttttttg ataacaataa cctagttgtt cgagtttaat ttccataatt gatctagtaa
     4681 tgctccttcc gatagcacgg tgcttccagt ttcaaagcca cctgcaacta atttttcttg
     4741 taattcaata ataaatggaa cacctaagcc aatttcgcgc attgcatctg cttgctcgaa
     4801 aatttcttgc ggtgtgcctt cactgtggac ttctccgtta ttcataacaa ttactcgatc
     4861 cgcaaaaaga acttcatcca aatcatgtgt aatcgaaata acggtaatgt cttcttgttc
     4921 acgcataatc cgaatagttt ccattacttc ggcgcgccct cttggatcaa gcatagaagt
     4981 cgcttcgtcc aaaataatga catctggttg cagcgccaaa accccagcaa ttgctacccg
     5041 ttgtttttgc ccaccagaaa gtctagctgg ttcatgtagt gcataacttt gcatcccaac
     5101 ctcattcaaa gctgactcga cgcgttccac cattgtatcg tgcggaaccc cgtgattctc
     5161 aagtccaaac gcgacatcgt cttgcactgt agctccaaca aattggttat ctggattttg
     5221 aaaaaccatt cctacttgtc gtctaatgtc ccatatattt ttttcagaca aaacaaagtg
     5281 tccgattttg attaaaccat cttctggaaa aagcaatccg ttgagtaatt tcgcaatggt
     5341 agatttacct gaaccattat gaccaacaag tgcaacccat tccccttttt gagcagaaat
     5401 agatacatct ttcactgcat atttttccgt atcctcatat ttataaaaaa cgtgctctaa
     5461 tctcacaaaa ctttctgcca cgcttaacac ctcacttttt gaccattcat tgtttattat
     5521 agtataaaca tccatccggc gcaaaatttc ctttttgatt gttttggttt aatgccaaag
     5581 ggaatatatt aacgttaagg atgtgataac tatgttagta gattttattt tacggcttgt
     5641 tgttgcgggt ctccttggag caattattgg acttgaccga gaaatcagag cgaaagaagc
     5701 tggattccgg acacattttc ttgtttcgct cggtagcgca ttaattatga ttgtttctca
     5761 atatggtttt tccgaaattg ccaccatgca aaatgtatcg tttgacccaa gtcgtgtcgc
     5821 tgctcaagtg gtaagcggga ttggctttat tggcgcgggt acgattatta ttcaaaagaa
     5881 atttgttcgc ggtctaacaa cagcagccgg actttgggcc acagctggca ttggccttgc
     5941 tattggtgca ggtatgtact gggttggaat tgccgctact ttacttacct taatcggatt
     6001 agaattcttg agtatcgttt tcaaatcatt tgcctttcat acaactgcaa ttatctattc
     6061 aaccgacaaa caagaaaatc tagtgaaggt cacggacaag atccaacaaa acaaacaaca
     6121 aatcgtttcg tactcaagtg aaaaagaact tatcggagaa agtcttttta ttcgcgtgaa
     6181 tattgttgta aaaacaaaga ataagaacga tgaatacgaa ctatttcact ttatacaaac
     6241 tcttcccaat gtaaccgttg aaaaaatgga ataaagaatt gctttctact gtttgcaact
     6301 cggttttgtt cacagaatat ccatttactt cctacttctc attttgctat aattcacccg
     6361 tcactactaa tagaatatag agagaaggga agagatgaaa aactttgtaa cttcagaacg
     6421 cgcggttttt aagatggata aatcggcgga acctgcaatt acagtgaaag atggctctgt
     6481 agtaaagata aaaacaaaag actacttcaa tggccaaatt caaaacaaac agcttcaata
     6541 cggggaccta gattggaaac aattttcacc aactactgga ccaatctata tcgaagaagc
     6601 tagaagtgga gatttattag cggtaacgat tgaaaaaatt gaactcctag ggacggaggt
     6661 atttttacta aacggaccaa atgttggtat aacagatgat ttattaacaa gcaactttac
     6721 tcgttgctac aaagtcagag agaatcgaat tatgtattca gatgaaattc atattccgat
     6781 aactaaaact atcggattgc tacgaacaga aggcttactt acctccaaat caccagctaa
     6841 caacgacggc ctactcgact catccgagat tacagaaggt gcaacgatct ttttaccagt
     6901 tgaaaaacag ggtgcatcgc tttatatcgg caatgttcga gctacagctg gcttcgggaa
     6961 aactactacc acgagtgcag aggcgccagc agaaatcact ttacgacttc aaatccttaa
     7021 aaatcgaaca gctcccacac ccacaattat tcatgacaac catttaattt gcttagcatc
     7081 agatctcact attgagaaag cggcaaaaaa agcgatgcaa aatatgataa ctttacttac
     7141 tgaatcagac aaaatgacaa ctgaagatgc gatgttcctt ctatcactgc aggctgagtt
     7201 tcaagtatgc aacatgggta aatcaaatat cactaccagt atcaaattac ctttggatta
     7261 ttttccagaa atgccatttt tataagaaaa gaacccccgt tctgacgggg gttcttttaa
     7321 atttgttcaa aaatgctgcc ttggtagttt ttaaggagga attcagctag ttttatcgct
     7381 tctttttcta ctaatttttg tcctttttta gttagttttt tactaagata gaattgaaaa
     7441 actattttat cccccgatat tttatatctc cacgttccaa aaaactgagc atttattatt
     7501 aagacagctt caatttgccc agcggtgcgc cagattagac tcgtttcttt ttcgctcgca
     7561 agccaattct ttttcgcgta acttacgaaa agcggatcaa acttccctaa tagaagcggc
     7621 gaccccatct ccacattttc ctgcgttttt gctttgctat aatagttctt gccatcttca
     7681 ccgatatagc atatatagtt ttcaagtaac ttttctaacg tttctatata atcactattt
     7741 cgcaaaccac tccaatgctt gaaatcttgt atagtcgctg gcccaaatgc actaaaataa
     7801 cgatcaatca ttgtttcaag acctgtcttg ctgcgcttgt tagttatcca agcatcttct
     7861 ctttctgaat caatttggtt tctatgacta taaaattttg ttttaggact ttctggcaca
     7921 caaaacaact tgccatcgag tgacccttga ataaaaaccc cgccccatgt catcagctct
     7981 tttgcttcat tacctagtaa agccgcaaag gactctttag acactttatc ttcgcgcagg
     8041 agtaattctt ccatttgtac taaaatctca tccaaatcac gtcctagaga gtctgcgtgc
     8101 tttcttaacc aattgttttt gttcgcataa acatcatgaa cataaaacca atcatccggc
     8161 gtatacatat ggacagtcat tctttgcccc cagattttga ttatcccttt atcgtcgtaa
     8221 gccatttgca ggttttcttt ggttaaatta ggtacacgat taaataaact aatctctcca
     8281 aattgttgat actgcgactg aataccaaat aacgcacgag ttgcatcctc tgcgctggaa
     8341 aatttagatt gtagtagtcc agaattaagt aatctattgt gagctatttc cgcgttagtt
     8401 aacgaacgca ttctccgtcc ctcccactgt ttatctttgg aatttactat agatggtttc
     8461 cagtataaag gcaagaaaaa aagacctgct atacatagat aacaggtcaa acaaaaaaag
     8521 cctgcctcct agcctacgat taagtagact aggaaacaca gagctagaca aggaaacacg
     8581 aagtctccat atcatgacac tccacttgct ttaaacgttt tattattaaa ctaattcaat
     8641 aataaccatt ggtgcgccgt caccgcgacg tggacctttt ttcaagatac gagtgtaacc
     8701 accttgacgt tccgcgtaac gtggagcaac atcatcaaat agtttttgta gagcgtatac
     8761 aggacggttt ttcttcacag ttgaaccatc tttaccttta gcatctactt gtactacttc
     8821 tacaacttca tgacggatga aagcagctgc ttgacgacga gcgtgcaagt ctcctttttt
     8881 cccagaagtg attagttttt caacaacttt acgaatctct ttagcgcgag cttctgttgt
     8941 ttcaatacgt tcaaatacga ttaaatccgt tgcaagatca cgtagtaacg ctttacgttg
     9001 tgagcttgta cgacctaatt ttctgtaacc catggaattg cctcctttat cagttttcgt
     9061 ttcttagaga taagccaagg tcagccagtt ttactttaac ttcctcaagc gatttacggc
     9121 ccaagttacg gactttcatc atatcgtctt cggatttgtc agcaagttcc tgtactgtat
     9181 tgattccagc gcgtttcaaa caattatatg aacgaacaga caagtctaat tcttcaatag
     9241 tcatttcaag cactttctct ttatggcttt cttctttttc aatcataatt tcagcttttt
     9301 gtgcttcatc tgttaaatta acgaagatac ttaagtgctc agaaagaatt ttagctccaa
     9361 gtgaaactgc ttcttctggg ctgatacttc cgtcagttaa cacatcaaac gtaagcttat
     9421 cataattagt tgattgtcca acacgtgtat tttccacttg atagttcaca cggataaccg
     9481 gtgaaaagat tgaatcgact ggaagtacac caattggcat attttcgcgt ttattttgat
     9541 cagcaggtgt gtaaccacga ccacgagtcg catttaaacg cacatgaaat ttagcattat
     9601 cacttaatgt agcaatgtgt aagtcgggat ttaaaatctc aacgtcgctg tcataattaa
     9661 tgtcagctgc agttactaca ccaggacctt gcatatcgat ttctaatgtt ttttcttcat
     9721 cagaatagat ttttagtgca agttttttaa tatttaaaat catggttgtt acatcttcta
     9781 ctacaccttc aattacagaa aactcatgta aagctccatc aatttggata gaggttactg
     9841 ctgcacctgg aagagaagat aatagaatac gacgtaagga gttacccaaa gttgtaccat
     9901 atccacgctc aagtggctct acaacaaact ttccatactt ggcatcatcg ctgatctcaa
     9961 tcgtctcgat ttttggcttt tcaatttcga tcattcaaat ttaccctcct tcaaaacgtc
    10021 tagaatatca gtctttatgt caaactctct gccttgatag ttaagacagt aaaaatctac
    10081 tattggcaaa agaaaacgac cacttatacg cgacgacgtt ttggaggacg acatccgtta
    10141 tgtggaactg gagttacatc tttaatagct gttacttcaa gaccagctgc ttgtagtgca
    10201 cggatagccg cttcacgacc tgaaccagga cctttaacag ttacttctaa tgtttttaaa
    10261 ccatgttctt gtgctgattt tgctgcactt tcagctgcca tttgcgctgc gaaaggagta
    10321 gatttacgag aacctttaaa tcctagggaa cctgcacttg accaagctaa agcattacca
    10381 tgtgtgtcag taatcattac gatcgtatta ttaaatgtag aacggatgtg tgcaatacca
    10441 gattcgatat tctttttcac acggcgttta cgagtatttg ttttacgagc cattcactaa
    10501 ctacctcctt tactattatt tctttttgcc tgctactgtt ttggacgggc ctttacgagt
    10561 acgggcatta ttttttgtat tttgtccgcg aactggaagt ccacgacggt gacgcatgcc
    10621 acggtaagaa ccgatttcga ttagacgttt aatgtttaag tttacttcac gacgaaggtc
    10681 accttcaact ttaatacggt ctaagatttc acggatttta cctagctctt cttcagttaa
    10741 atcacgagta cgagtatctt cagaaacgcc agcttcagca agaacttctt tagctgtttg
    10801 tttaccgata ccataaatgt aagtcaggga aataacaata cgtttttcac gtggaacgtc
    10861 cacacctgca atacgtgcca tttacttaag cacctcctct tatccttgtt tttgtttatg
    10921 ttttggattt tcacaaatta ccattacttt acctttacga cgaataactt tacatttttc
    10981 gcacataggt ttcactgatg gtcttacttt catatagata tacctccttg tttattagag
    11041 aaaatgtctc tataaaccga taatttctaa gctggataaa ccagaccggt atataaattc
    11101 aatttcggag tgcaaattat ttaaaacgat aagtaattct tccgcgtgtc aggtcgtatg
    11161 gagaaagctc tactgtcact ttatctccag gtaaaatacg aatgtaatgc atacggattt
    11221 taccagaaac agttgccagt actttatgac cattttcgag ttcaacgttg aacatcgcgt
    11281 ttggtagagt ttcttgtact acgccttcta cttcaataac atcttccttt gccatatgtt
    11341 tgctacctcc ttcttgtatt cttggatttg ttcctgatgc aggcctaatc ctttcagtgt
    11401 aactatttct cttacatgaa aaaaacgtaa aacatgcaaa aatggatgca cttcattaaa
    11461 aggcaacaca tttcgccagc ttttcagaca acctgtaaaa gtgaaatccg taaaaaccag
    11521 aagaactgtc actcgcaaaa gtattgcggc tgaacagatc aaggtagaac atatacgtca
    11581 ttcggatgat cttcaaacgg ttctctcgtt catcatgatt tgcttagatg cctttaattc
    11641 cactgccaat tatccattat actacaaact aaactaattt gcacgcattg attttgacag
    11701 tgattcagca cagctcactc ctcaaaaaga agcaagaatt ttttccacat ctacaaaaac
    11761 gtctttaatg tcttgctcgc cgtttatgtt atgaagttta cccttttcag aataaaaatc
    11821 tagaagcggc ttggtctgtt tcatatttac atttagtcgt ttttcaaccg tttctttctt
    11881 gtcgtcatcg cgttggtaaa gttccccgcc atctaaatca catttcccag gaactttcgg
    11941 tgggttgtaa atttcatggt aagttttacc gcaagtccga caaatccaac gacctgtaag
    12001 acgtttcatt aaaacatctt tatcaacttc aatgttaatg acagcatcaa gttctgtccc
    12061 taaatcattt agaatatttt ctagctcttc tgcttgttcc acagtgcgcg gaaaaccatc
    12121 aagcaagaaa ccattcttag catcatcttc ggccaaacgt tcacgaacga taccatttgt
    12181 tacttcatca ggaacaaggt cgccattatc cataaaggat ttagctttct ttcctaattc
    12241 cgtattattt ttcatagctg ctcggaacat atctccagtg gaaatatgag gaatgttgta
    12301 tttctcaaca atctgttccg cttgtgtgcc ttttccggcg ccgggcagtc ccattaatac
    12361 taatttcaac tgtttcgccc cttattacgc gctagctcct gctaggaaga cctaacaaga
    12421 actgcgtgtt atttgataaa tccccgatag ttccttttta caagttgtcc ttcgagttgt
    12481 ttcgtagtat ctaatgctac cccgataaca attagtaggc ttgtaccacc aacggcaagt
    12541 gactgcggta aactaaacac agtagtaccg atagttggaa gtatagcaac cgctgaaagg
    12601 aaaattgcac caacaaatgt tagacggtaa agtaccgatg taagataagc ttgtgtttcc
    12661 cgaccaggac gtttactagg aatataccca ccttgctttt tcaagttgtc tgcaactttc
    12721 tcagggttca cttgaatgaa agcatagaaa taagtgaaag caacaattag tgcaacatat
    12781 aaaatcatac caattggttt tgtgtaatca aacacatctt tcaatacttt tacaacatcg
    12841 ttactttgat caaagaaagt aaggatagtt tgtggtgtaa taataaatgc acttgcaaag
    12901 ataacaggga taactccggc agagttaagt tttaacggca agtgcgttgc ttgcgcgccc
    12961 gattgttttg ctcctgctac acgtttagag tattgaattg gaattttgcg tagtgcttgt
    13021 tggaagaaga ttacagctac aacaatagct aaaattgcaa tccctacacc aactaatgtc
    13081 agaacatgta ggaaaagttg atcaccagcg ttttcaattt gcgaaacata taattgacga
    13141 actccatcag gaatacgagc aacgatacct gcaaagataa tgatggaaac accattacca
    13201 acgcctttaa cagtgatttg ttcacctagc cacattaaga acattgtacc agtagtcaat
    13261 acaatagcga taattgcata tctaccaatg gaaggttcaa ttactaagcc agctgaagac
    13321 atgcggttaa atccatatgc cataccgaaa gcttccacta aaccaagtcc aattgtcatg
    13381 tatctagtaa gttgattgag ttttttacga cccatttccc cttgcttcga ccactcagtc
    13441 aatttaggaa caacgtccat ttgaagtaac tgaacaataa tggaagatgt aatgtaaggc
    13501 attacaccca tggcaaaaat tgagaagttt tttaaagccc caccattaaa tgtatttaag
    13561 aaccccaaaa taccgccatc catactagat tgtaaagctg ctgcgttaac tcccggtact
    13621 ggcacgaatg taccaatacg gaaaataact agcattgcta atgtaaatag tattttttta
    13681 cggatgtctg ctactttgaa gaagttaact aacgtttgaa acattagatc acctcagttt
    13741 ttccgccagc cgcttcaatt gcttctttcg cagctgcaga gaatttgttc gctttcacag
    13801 taagtttttt ctcgatattt ccattagata aaatcttgat tccggatttt tcattacgaa
    13861 taattccagt ttcaactaaa agttctggtg ttacttctgt accatcttca aagcggttta
    13921 aaacatctaa gttcacgata gcaaattctt tacggttgat atttgtgaat ccacgttttg
    13981 gaatacgacg gaaaagtgga agttgtccac cttcaaagcc taaacgtacg ccaccaccag
    14041 aacgagcttt ttgtccttta tgaccgcgtc ctgaagtttt gccgttacca gagcctgttc
    14101 cacgaccaac acgattacgt tctttacgag aaccttctga aggcttaagt tcatgtagtt
    14161 tcatgtcaag cacctcctcc tatttaacaa attctatcca ttgcataata attttaagct
    14221 taaacttctt tgacgtccac taaatgactt actttagtga tcatcccacg aattgcagga
    14281 ttatcttctt taaccactac agaatttgtt ttaccaagac ctaatgcttg aacagttttg
    14341 cgttgtggtt gagggcgtcc gattaagcta cgttttagag taatttctaa cttcgccata
    14401 atgataattc cctccttatc ctaacaattc ttctactgtt ttgccacgaa gtttcgcaac
    14461 atcttcagcg tttttcagtt gtttaattcc gtcgattgta gcacgtacca tgttaattgg
    14521 tgtattagat ccaagcgatt tggaagatac atcagcaaca ccggcaagtt ctaggaccgc
    14581 acgaacggga ccaccagcag ttacaccaga accggcacta gctggtttaa gaagaatttc
    14641 tccgccacca aaatgtccga ctacagtgtg tggaatagtt gtgtctacag ttggtacaag
    14701 caccatgttc tttttagcat cctcaacagc tttacggata gcatctggaa cttcttgcgc
    14761 tttaccagta ccgaaaccaa catgaccatt tttgtctcca acaacaacaa gtgctgtgaa
    14821 acggaaacga cgtccacctt taactacttt agcaacacgg ttgattgtaa caacgcgttc
    14881 ttctaaatct aatttgtttc catcaatttg ctcaggcatg taatatgtcc ctccttctta
    14941 ttaaaattct agtccatttt cgcgagctgc ttcagcaaga gctttcacgc ggccatgata
    15001 taagtatcct ccacggtcaa aagtgacaga agtaatacct ttttcggaag cacgtttagc
    15061 aactagttcg ccaactttgc ttgctgcatc aactttggat tcagcagaac cgaaatcttt
    15121 atctaaatta gacgcacttg caagtgtcac accatttaca tcatcaataa tttgagcata
    15181 aatgtttttg tttgaacgga atacgtttaa acgtggacga ctttcagttc cagaaatctt
    15241 agaacgaaca cgagcatgtc tttttttacg tactttattt ttgtcgattt tggtaatcac
    15301 acgactcacc tcttctctca tttgcctaat taagcggcat tatttaccag ttttaccttc
    15361 tttacggcgt acatgttcgc cttcgtaacg aataccttta cctttatatg gctctggtgg
    15421 acgtacggca cgaatgtttg cagctaactc gccaacgtgt tctttgttgt atcctttaac
    15481 aatcacttgt gtgtttgcag gaacttcaat atctacgcct ttaggagcaa caaactctac
    15541 tggatgagag taccctacgt taagaacaag cttgtcgcct tgtttttgcg cacggtaacc
    15601 aacaccgata agttctaatt tcttttcata accctcggaa actccgacaa ccatgttatt
    15661 aagaatagca cgagttgtac catgaagtgc acggtggttt ttattatcag tcgggcgaga
    15721 aacgttaatt tcgttgcctt caatattaat agtaatttct gggttgaact cttttacaag
    15781 ttcaccttta ggacctttaa ctgttgctgt tgatccatta agtgtaactg ttacacctgc
    15841 aggaatcaca atagtttttt tacctatacg ggacatttat tgcacctcct tatggtttac
    15901 tttttcttac caaacgtatg ctagtacttc tccgccgact tgtttagcac gggcttcttt
    15961 gtcggttaaa acgccttggg aagtagacac gattgcgata cctagaccgt taagtacttt
    16021 aggcacctca gttgattttg catatacacg taaacctggc ttactaatac gtttcaaacc
    16081 agtgattaca cgttcgccag tcgctccata ttttaagaaa acacggattg ttccagcatt
    16141 gtcatcttca atatattcaa cgtcacggat aaaaccttca cgcttcaata tttcagcaat
    16201 ttcttttttg attttggatg caggcagttc taatttatca tgtttaacca tgtttgcatt
    16261 acgaatgcga gttagaaaat ctgcaattgg atctgtcatc accatgtata ataccctcct
    16321 tccttaaact ctttcttacc agcttgcttt tttcacgccg ggaatttgac ctttataggc
    16381 aagttcacgg aaacaaatac ggcataattt aaatttgcga ataacggaat gtggacgacc
    16441 acaacgttca caacgagtat atgcttgaac agcgtatttt ggtgtgcgtt tttgcttcgc
    16501 gatcatggat ttcttagcca cgttttcgcc tccctactaa aattagtttt gattactttt
    16561 gaaatggcat ccctagttga gttagtaact catgagattc ttcatcactt ttggcagttg
    16621 taacgattac tacgtccata ccgcgtactt ttgatacttg atcgtaatca atttcaggga
    16681 aaataagttg ctctctaaca cccaacgtat agttaccacg accatcgaaa gcttttttcg
    16741 atacgccacg gaaatcacga acacgtggaa gtgaaacagt aactaattta tctaagaaat
    16801 catacatgcg ttcaccacgc aaagttactt tagcaccgat tggcattcct tcacgaagac
    16861 ggaaaccagc gatagaattt tttgcttttg tgattacagg tttttgacca gtgataagag
    16921 ctaactcctc aactgcactg tctaaaactt tcgcatttgc tgtagcgtca ccaacaccag
    16981 tgttgattac gattttatct atttttggaa cctccattac ggagtcataa ttgaatttgc
    17041 tcattaaagc aggaacaatt tccttaagat attgatcttt aaggcgattc atgtaatatt
    17101 ccctccttcc tacgactttt atttatctat tacttcaccg gatttttttg ctacgcgtac
    17161 ttttttatcg cctttaactt cgtatcctac acgagtaggt tcgcctgttt tagggtcaat
    17221 tagcattacg tttgaaacgt ggattggtgc ttcaacattc aagatcccgc cttgcgggtt
    17281 gatgttggaa ggttttgtat gttttttaac catattgatt ccttcgataa gtacgcggtc
    17341 ctttttcgga aatgctgcga gcactttgcc ggatttgcct ttatctttac cagtaataac
    17401 ttttacttta tcaccttttt tgacatgcat tggtatagca cctccttgat ttcttggaac
    17461 ttatttttta aagaacttct ggagctaaag aaacgatctt cataaagttg ttttcacgaa
    17521 gttcgcgagc aacaggtcca aaaatacgtg ttccacgagg acttttatcg tcacggataa
    17581 tgacacatgc attttcatca aacttgatgt aagaaccgtc ttgacgacgt gctccactct
    17641 tagtacgaac gattactgct ttaacaactt cacctttttt gacaacgccg cctggtgttg
    17701 cttgtttaac ggtacacacg acaacatcgc caatgttagc agttttgcgt cctgatccac
    17761 ctagtacttt aatagttaac acttcacgag caccagagtt atcagccact ttcatacgac
    17821 tttcttgttg aatcattagg acaccctcct tccagaataa cgggtcggaa aaattgcact
    17881 cggcaacttt tcacaatcta tttttaactt ttgatttaga taattactgc ttcttctaca
    17941 acttctagta aacggaaatg tttagttgca gacaatggac gagtttcgga aatacgaact
    18001 acatcgccag tttttgcaat gttattttca tcatgcgctt tgaatttttt agaatacttc
    18061 acgcgtttac cgtacaaacc atgtttcttg tacgtttcaa caaccacggt aattgtttta
    18121 tccattttgt cggatacaac acgaccagta taaactttac gttggttacg gtcagccatg
    18181 tattaaaacc tccttacgat tcttttttaa gcaagttctc tttctcgaac gattgttttc
    18241 atacgggcaa ttgctttacg aacctcacga atacgtgcgg tgttttctaa ttgaccagta
    18301 gctaattgaa agcgcaggtt gaagagctct tctttcaaag ctttttcttg atcttggatt
    18361 tcggtagtgg ataaatcacg gatatcatta gctttcattt gcttcaccac caatttcttc
    18421 acgtttaacg atcttagttt tgaccggcag tttgtgtgct gctagacgta atgcttcacg
    18481 cgctacatct tcaggaacac ctgcgatttc aaacataatt ttgccacgtt tgactgggct
    18541 tacccaacct tccggagcac ctttaccttt acccatccga accccgattg gtttagaagt
    18601 gtaagattta tgagggaaaa ttttaatcca aactttaccg ccacgtttca tgtaacgagt
    18661 cattgcgata cgagctgctt cgatttgacg gtttgtaatc caagaagctt caactgcttg
    18721 aagaccgtat tcaccaaatg caacttcagt tccgcctttc gcgcgtccac gcatgtttcc
    18781 gcggaattca cgacggtatt ttacacgttt aggaactaac attattattt tcctccttcc
    18841 acattgtttt tcttcgtagg aaggacttca ccgcggtaga tccagacttt aacgcctagt
    18901 ttaccataag ttgtgtcagc ttcttcccat gcgtagtcga tgtcggcacg caatgtatga
    18961 agaggtactg ttccttcgct atagtgttca gcacgagcga tatccgctcc gccaagacga
    19021 ccagatactt gagttttgat accttttgct ccagcacgca tagtacgttg gatagcttgt
    19081 ttttgcgcac gacggaaaga tacacgacct tccaattgac gagcgatatt ttcagcaacc
    19141 aattttgcgt ctaggtcagc acgtttgatt tctacgatat tgatatgaac acgtttttga
    19201 gtaagttcgt tcaagttttt gcgtaatgct tcaacttcag aaccaccttt accgataacc
    19261 ataccaggtt ttgcagtatg aatagtgata ttcacacggt tagctgcacg ttcgatttct
    19321 acacgagaaa cagaagcgtc agatagacgt tttgcaacgt aatcacggat gcgtaaatct
    19381 tcatgtaaga agtccgcata atctttttcc gcgtaccatt tggagtccca atcacggatg
    19441 acaccgatac gcatacctat tggatgtact ttttgaccca cgaattatcc ctccttcact
    19501 tcagatacca caactgtgat gtggctagta cgtttgttga ttgcacttgc acgaccttgt
    19561 gcacgtggac ggaaacgttt aagtgttgga ccttcgtcaa caaatgcttc ctctactaca
    19621 aggttgttaa tgtctaaatc atagttatgc tctgcgttag caatagcaga ttttaatact
    19681 ttttcaataa ttggggaagc tgatcttgga gtatacttca agattgcaat tgcttcgcca
    19741 acttgcttgc ctcgaattaa atcaatgacg attctagctt tgcgaggagc aatacgaacc
    19801 gttttggcaa cggcttttgc gcttgtaact tcacttgcca ttaggatatc ctcctctcaa
    19861 attagcgttt agttttttta tcgtcgcccg catgaccgcg gtacgtacga gttggtgcga
    19921 attcgcccag tttgtgtcct accatatctt cttgaacata aacaggaacg tgtttacgtc
    19981 catcatatac tgcgattgtt tgtccaacaa aagttgggaa aatcgtggag cgacgagacc
    20041 aagttttaat tacttgtttc ttttcgcttt ctgctgctgc ttccactttc ttcatcaagt
    20101 ggtcatcaac aaaaggtcct tttttcaaac tacgacccat gacggaacct cccttcgcat
    20161 agtcaggaag ctgagaacgc atgtcctcgc tatcctgcta ccaattttat tcaatctatt
    20221 gatccgatta ttttttctta cgacgacgta cgataaattt atcggagttg ttgtttttct
    20281 tacgtgtttt gtatccaaga gttggtttgc cccatggaga cattggcgat ttacggccga
    20341 ttggagcttt accttcacca ccaccgtgtg ggtgatcgtt cgggttcatt acagatccac
    20401 gaacagttgg gcgtttaccc atccaacgtg aacgacctgc tttaccgatg ttgataagtt
    20461 cgtgttgttc gttaccaact tgaccgattg tagcacggca agtagcaaga atcatgcgaa
    20521 cttcaccaga gtttaagcgg attaatacgt atttaccttc tttaccaagc acttgagcac
    20581 ttgttccagc agaacgtact aattgtccac ctttaccagg tttcatttcg atattgtgga
    20641 taacagtacc cactggaata tcttttaatt ctagtgcatt accgactttg atatcagctt
    20701 ctgctcctga ataaattgtt tgacctactt caaggccttt tgctgcgatg atgtagcgtt
    20761 tttctccatc agcatagttg attagagcaa tattagcaga acggtttgga tcgtactcga
    20821 tcgttgcaac gcgtccagga ataccatctt tgttacgttt gaaatcaatc acgcggtatt
    20881 ggcgtttatg gccaccgccg tgatgacgaa cagttaactt accttggtta ttgcgtccgg
    20941 ctttcttttt aagaggacgt agtaaagatt tttctggagt acttgtagta atctcagcga
    21001 aatcagaact agtcatgtgc cggcgcccgt tagtggtagg tttatacttt ttgatcgcca
    21061 ttgtttcccc tcctcgttag atttatttaa agttagtcga attatacttc aaagaattga
    21121 atttctttgc tgtcagctgt aacagtaaca atcgctttac ggcgtttgtt agtgtaacct
    21181 gcataacggc ccatacgttt aagtttgcct ttgtaattca ttacgtttac tttagcaact
    21241 tttacgtcga aaatttcttc aactgcgtat tttacttgcg ttttagttgc gcgagtatct
    21301 acttcaaatg tatatttctt atcgtcgaga atacttgtag attcttcagt tacaactggg
    21361 cgcttaatga tgtcgcgtgc atccattatg cgagcacctc ctctactttt tcgacagctg
    21421 ctttagtgat aattaattta tcatgtttag caacttctag tactgagata ctttcagctg
    21481 gaataactgt aatgccttgt aagttgcgtg cagataattc tacattttca ctttcaccgg
    21541 caactacgat tagtgcctta gtatctacag agatattttt aagaaaagcc gcaaattctt
    21601 ttgttttagg tgcatcgaaa gtcaaacctt caagtacaac taatttttct tcatttactt
    21661 tagaagaaag aattgattta atcgctaaac gacgaacttt cttaggtaat ttgtatgcat
    21721 atgaacgagg tgttgggccg aatacgacac caccgccacg ccattgcggg gaacggattg
    21781 aaccttgacg ggcacgacct gtaccttttt gacgccatgg tttacgtccg ccaccacgta
    21841 cttctgaacg attttttact ttgtgagtcc cttgacgtag ggatgcacgt tggctcaaaa
    21901 tcacatcaac aacaactttt tcatttggtt cgataccgaa aacagtgtcg tttaaagtaa
    21961 tttcgccagc gtttgttcca tcttgtttaa gtaagcttaa ttttggcatt cgttagtcct
    22021 cctttccaaa tgaattattt tgctttagta gcagttttaa tttgaactaa tgctttttta
    22081 gcgcctggaa cgttaccttt tactaaaaga acgttctttt caacgtctac tttaacgatt
    22141 tctaggtttt ggatagtgat ttgttctcca cccatacgac ctggaagtag tttatttttg
    22201 aaaacacggt taggtgctac tggacccatt gaacctgggc gacgatggta acgggaaccg
    22261 tgggccatag ggccgcgtga ttgtccgtgg cgtttaataa caccttggaa tcctttacct
    22321 ttcgatacgc ctgtcgcgtc gatgatgtca ccttctgcga atacgtctac ttttacttct
    22381 gcaccaatct catactcgtc taagtttaca tcgcggaatt cgcgaatgaa gcgcttagga
    22441 gtagtattgg cttttgctac atgaccttgt tcgggtttgt ttgacaaaat tgctctctta
    22501 tcttcgaaac cgatttgtac agcttcatag ccgtcagttt caacagtttt cttttgaagt
    22561 accacgtttt gtgctgcttc gattactgtt actggaataa gttcgccgtt ttcagtgaaa
    22621 acttgtgtca tccctacttt tctacctaag attcctttgg tcatgagtca cacctcctgt
    22681 taatttaata tattcttatt atagtttgat ttcgatgtcc acaccgcttg gcaagtctaa
    22741 acgcatcaag ctatcaactg tttgtggtgt tggattaacg atgtcgatta aacgtttgtg
    22801 tgtacgcatt tcgaattgct cacgagagtc tttatatttg tggaccgcac gcaagactgt
    22861 gtagattgac ttctctgttg gaagtgggat cggaccagat acagaagcac ctgagcgttt
    22921 cgctgtttct acaatctttt ctgctgattg atccaaaata cggtgatcat aagcttttaa
    22981 acgaatacga attttttgtt ttgccattac tttccctcct tttcgcctac ttttaaagta
    23041 gacattctcc gtgaaaatta cctgaacatc cgccatggca aagcggccgg gtgtgtcagc
    23101 aacctttcac ttcatcacat gggcattccc ggcaataccg gggtgctcgt tgtcaaaagg
    23161 gcagaccaat gcctgtccat ttgcacttta tctattatac acgggttagg gatagtaatc
    23221 aaccgctttt tgaaaaaagt tttaagttat tttcatagga actattatat agaagattct
    23281 cggttttggt ttatcttcaa actgtctgac agagccattc tgctcatttt atccaaaaga
    23341 aaaaaacatc cgttaatatc gaatgttttt aagatgttct tagtattacg agtcccgcgg
    23401 ttaaaagtat cattacacat gccgcaatca aatctccaaa atgccaatgc aatattcgga
    23461 atctcgtgcg cccttcgcct ccttgatacc ctctcgcttc cattgcatcc gctaattctt
    23521 ccgctcggtt aaacgaacta acaaataacg gaataaaaat cgggacaaca actttcattt
    23581 gttcgaaaag attaccttca ccaaaatcca ctccgcgagc tcgctgcgct ttcataattt
    23641 tatctgtttc tcccataagg gttggaataa agcgaagtgc caccgaaatc attaatgcaa
    23701 tgtcattcac cggcactttg agtacagcaa acggacgaag gatgtaagca attgcgtctg
    23761 tcaggttcat aggcgtcgtt gtgagcgtga taacggtcga catcatgata attaagacaa
    23821 agcgcaaaaa cacaaatacc ccgttcaaaa gcccaaatga agagattgta aatggacccc
    23881 aatcaaaata aatcgttccg ccactcgcaa atagtatttg cattactact gtaaataaaa
    23941 ttagccaaat aagtggtttt acacctttta taaacacttt taacttgata cctgtcattt
    24001 gaatgaccat gagtgtgaac aaaaccatta aggcgtatgt ccaccagtta ttcgctaaaa
    24061 ataaaatgcc gatataataa aagcctgcta aaagtttcgt tcgcgcatcc agaccatgaa
    24121 ttaaggactc ccctgggaca aaacgaccta atattagttt ttcaatcatt caaagaagcc
    24181 cccttttctt tacgccagtt gttgaagtac cacgctcacc gccattaaaa ttgtcaatgt
    24241 cgcattaatt aatacgaaat tacgaatacc aataacaaat gtttttgatt ttacttgttc
    24301 tttattgaat ttaactagat tacgatacac tggatagatt gttattagtg atagtaacat
    24361 gattggatgt aagaagttta tagctaccga aacaaccaca gctaaaaatg aagcataata
    24421 taaagcatta aataataaga ctcccatttt tcttcctata taatacggaa gtgtgtaacg
    24481 atgattccga atatcttcat ctaaatcaca gagattattc gcgagcatga tattagctat
    24541 tgtgaaaata caaggtaagg ataccacacc tatccgaata atttctatta gattgaactg
    24601 gattgtcacc gtttctcctt gccaaagtaa attcgctatt cccgcgtcgt atgcatttac
    24661 atatacagct aagaagaaaa tcccaaaccc catcgttacg cctgaaaaaa tttcacctaa
    24721 cggcatacga gaaagcggta caggaccgaa tgtatataag atgcctatac aaaagcagac
    24781 aaatccaatt aagagcacta aaagatctgt tcgaaaaact aaccaaacac ctaatcctgt
    24841 agcaatgaag aacatcaaga aaatagttat aataactgtt cgcaccggaa tttgctcttg
    24901 cccaattaca ttgctggtag ttcgataatc gtaatcatga ttgtctgttg ctttgcggta
    24961 atccatatag ttattaatcg ctgttgtagt caagtcgaat atgagcatag atccgaaaaa
    25021 tatcaacgta ttaacaggtt tgaacatatc atattgatac acaacaaata gcgttcctaa
    25081 cataaacgga aaaacactag ctatcttcgt ttggatttca accaacttca gaaacgatgg
    25141 tattgacata tccccttttt agcccctttt ctagtttatt gtgagcagaa tccagagcga
    25201 attctgctca ctttcttcta taataatagt ttattttttt agcgtgtcca tctggaagtc
    25261 tttatccgtt aattcgaatt gaccttttaa gccagaagtt tcgtatactt ttttctcttt
    25321 actgatgaaa atagcatcta caccttcaaa ttgttcaatg tagtccatgc cacctttaac
    25381 ccctttggag aaagtagcgg tggatagacc gtcgccatca attgattttt tagatacaat
    25441 cgaaactcca gcgatatcat tgtcaaacgg atatcctgtt ttcgggtcta agatgtgatg
    25501 atatgtttta ccatccactt caaggtaacg ttcataaata ccagaagtta cgatagacat
    25561 attagattca ggaagtttcc caataacact tccacgcgga gaaaacggat cttgaattcc
    25621 gacattccat ttgttgccat tcgggttgtt gccttgaaca taaatgtttc cacctaaatc
    25681 tatgatagag gttgttactt tattttcttt gaataccttt aaagtctcgt cagtaataaa
    25741 gcctttagca attgccccta aatctagttc cataccttct ttttccaagt atactgtttg
    25801 gtctttatca ttcattttaa cgtctttgta attaattaat ggtaacaccg cgtcaatttc
    25861 tgcttgagaa ggtttgcgcg catcagaaaa accgatgtgc catagagatg ttaacggccc
    25921 aatagtaata tcgaagctac caccagagtt ctcggagtat ttaagccctt cttgaattaa
    25981 gtagtataca tctttagata ctttcactgg ttttttgccg gcttgttcgt tgattttatc
    26041 cacttcagac gttttttccg aatcacttgt ggtaatcttg gcagctagat ctttgattcg
    26101 atcgaagcct ttatcaagca cgtcttcttt gcctttatca taaattttaa gcgttactac
    26161 tgtgcccatt agaaagtctg ttttggagta tggttgatcc attagttttt ttgaatcact
    26221 tggttcactc tttgtttctt tactagaatt tccacacgct gatacaacaa gcgccaatat
    26281 gataactgaa attattattt tccatttctt cattagcttt ttcacctttc taaatccgtg
    26341 atctttactt gaataactat agcgtaaaaa aaggaataaa tctacagtaa aaaggcttaa
    26401 ttcctctgtt tttcgataaa aaaatcggct agccctagaa attaggacca gccgttttgt
    26461 acataaattt cgctaattat tcagcttcta ctaggttgta cactttaatt gtgtcagtgt
    26521 taccattttg tgcagcattt tgaagttgag ctgcgtagat tttgaattgg ttagaagagt
    26581 tagtagcacc agaaacagtg tctactgcag caacgtcttg tttttcaaca agagatttgt
    26641 taagtgctgg gatgtattct tttggaccag taccagattt agctttcatg tttttctcgt
    26701 agtcagcatc gtctgattta agtttgccgt ctttgtcaac atagttgtag tcagatttag
    26761 tgattttgcc atctttaaca tccatgctga atactacacg gtaaccatgt gcgtaatttt
    26821 gttcttcaag tttataagtt ccatcttcca ttttagctaa gttgttgatg gaaattgtag
    26881 ttgtatcagc tttttgagct gcttggatta attggttagc atagttgatg aaagcgtcag
    26941 aagaatgagt tgctcctgaa actacttcta cagatgctgc agattgattt ttaactaaag
    27001 aatcgcttaa ttgtttcaag tattcttgag gaccagttcc tactttatct ttcattgctt
    27061 tttcgtagtc tgcatcttca gattttaatt tgccatcttt gtttttgtaa tcgtagttag
    27121 cttttgtaat tttaccatct ttaacttcga ttgacatgaa acctttccag cctttgtcgt
    27181 cgaaattctt ttcttctaat ttgtaagtac catcagtcat agtaccatca gttttagctg
    27241 ttttctttgt ttctgtttgt tttgtgtctg tgctcttttt gtctttgctg ctgtcgtcac
    27301 tgctaccgca acctactagt aataaacttg aagccattac cacggtaata cccattgcta
    27361 cttttttcaa tttcatgttt tgctcccacc ttttgtttta ttgattaact ttgtttgtga
    27421 tttcgtgaac acaaaccgat agtctgcgaa agcgatatca cttttacaat acaaatgata
    27481 ccatcagcgc ccagttttgt ctactgtaat tctaaagaca taattcatct aattttcaaa
    27541 ataatgacta ttggtatata tataacagtt aaagccaacc ttttctagca aaatagcaaa
    27601 caaaaatgtc taacatccta tgttaaacaa ggacttttag cctgcttaat tatgtaacat
    27661 ttgcacaaag tcctattttt caaatttaga ttagaattgt tctttactat ctagacatta
    27721 gtaggaggtt tctgttaaac tatgataggt tataataata ctgtggggaa ttttggactc
    27781 attttatttt tgtgaataaa cttacaagga gttgaggaag catatgcctg aaaagaatat
    27841 cgttttaatt ggggcaggat atgcaggtgt acacgctgct aagaaattag ctaagaaata
    27901 caagaaagac aaagacgtta atattacatt aatcgatcgt cattcgtacc atacaatgat
    27961 gactgaacta catgaggttg ctggtggtcg tgttgaacca actgcaattc aatatgattt
    28021 acgtcgtttg tttaatagaa caaaagttaa tcttgtaact gataacgtga cgcatgtaga
    28081 tcatgataaa aaagttgtaa caacagagca cggtagttat ccgtttgatt acctagtact
    28141 tggtatgggc ggagaaccta atgatttcgg aactcctggt gttggcgaaa atggctttac
    28201 actttggtct tgggaagatt ctgttaagtt acgcaatcat attgaagaaa ctgtaacgaa
    28261 agcatctcgc gaacaagacg ttgaaaaacg taaagcaatg ttaacattcg ttgtttgtgg
    28321 atctggattt actggtatcg aaatggttgg ggaactttta gaatggaaag atcgtcttgc
    28381 taaagataac aaaattgacg catctgaaat taaactagtt gtagtagaag ctgctccaac
    28441 aatcctaaac atgcttgaaa gaagagacgc tgacaaagct gaacgttaca tggttaaaaa
    28501 aggtattgaa atcatgaaaa acgctgctat cgttgaagtt aaacctgaaa gcatcgtact
    28561 taaatctggc gaagagcttc caacaagtac attaatttgg actgctggtg ttcgcgctaa
    28621 ctctgataca aaagattacg gtatggaatc tgctcgtgca ggccgtttga aagtaaacca
    28681 atatatggaa gcagaaggtc ttaaagacgt ttatgtcgtt ggtgaccttg cttactttga
    28741 agatgaagaa ggtaaaccaa ctccgcaaat cgttgaaggt gctgaacaaa ctgcattaac
    28801 tgcagcgaaa agcattatcg tggaaatgag cggtactggc gagaaagaac cattccaagg
    28861 taaatatcat ggtgtaatgg tttctatcgg agctaaatac ggtgttgctc accttggtgg
    28921 tatgcactta tctggttggt tcgctatttt aatgaagcat atggttaact tgtattactt
    28981 cttcggtatt cgcagtggtt attacatgtg gcaatatatt atgcatgaat tcttccacat
    29041 taaagatcac cgcaacattt tccgtggttg gacttctcgt tatggtaacg tactttgggt
    29101 tcttccttta cgtgtatatc ttggttggtt ctggattgac gaagctcttt ctaaaatcta
    29161 cggtgaaact acatgggata aagtaagtat tacaaattta aaacctttat ttaacggtat
    29221 cggttctgat tcttggttaa ctgcaactac ctctaaaatg ccattcgaat ggttacaaac
    29281 tgctgctaca tctggtgcta gtcaagctgc cggtgatgct gctggggctg ctgcaacaaa
    29341 tgtaactact ccaattctta gtcatatgcc tggttggttc cagtggatta tggaacttct
    29401 aatgccaaac cttgatgttg ctctagtaat gcaaaaagtt gtaccttttg ttgaacttgc
    29461 aatcggtctt gctatggtgg taggtctatt cacttggctt gtaagtatcg gaagtgccgg
    29521 attcctagta atgtttacac taagcgctat gcttggttgg gacaaattct gggcgttacc
    29581 agcttctatc gcacttctaa atggcgctgg acgcacattt ggtcttgatt attgggctgt
    29641 tccttggttc caaaaacatc ttggtcattg gtggtacggt aagccaagat ccgtttacag
    29701 agacaagtaa tttagttagt taaaatttta aataaaaacc cgggagtgca tccaaaagcc
    29761 agttttggca taggaggtgc ttccgttttt attatttgtt gatttcttga actttttcct
    29821 attatattta ggcattatcc tttaaaatag gatttgtaca tgacattttg aaaggaggca
    29881 atacggtgaa gaagtatctt tctatggtga agcgttggga tattattatt attttatctc
    29941 tttgtatact ctcctttttg ccgattgcta ttttttcata tgtaaaagcg aatgaaccgg
    30001 ctcctgctaa cggaaaaaaa gagcttgttg cagttatttc tgttgatagt aaagaatata
    30061 aaactgttac gctcactggg cacaaaggga cggaaagctt tgatgtgaaa caaccagatg
    30121 gacatactaa cacgattgag gtttcggggg aagaaatccg aattagtaaa gcgaactgta
    30181 acgatcaagt atgtgttcgg actggagcaa ttgataaaca aggcgataca gttgtttgtc
    30241 ttccacataa gttagtaatt gaagtaaaag cgagtgacgg gagttcaggc gattcagatg
    30301 atccgattat ctcttcctga ccttatcctc caatagatag gaaagtgttt ctatgacaaa
    30361 aaacagacga ttagtatata tagcacttct ggctgctcaa gcggttgtca ttagtttact
    30421 cgagcgggct attccgtttc catttgcgtt tgctcctggg gcgaaactag gtcttgctaa
    30481 tattattacg tgtatttcgc tttatacatt atcggcaaaa gatactttta tgattatctg
    30541 cattcggtta gtattatcca ctttgcttgg tgggacaatt tcgaccttta tgtatagcgc
    30601 ggccggagct atcttaagtt ttcttgggat gtggctcgta caacaacttg ggccgaaacg
    30661 cgtgagcatc attggcgtta gtgttaccgg tgggatttta cataacgttg gtcagctcgt
    30721 aattgctagt tggattgctg gtacttggtc cgttatgctt tatttgccag tattatcttt
    30781 catcggcatt ctttctggga tcgcggttgg gattgcagca aattacctac tgaaaaacgt
    30841 ccaaactttg cggatgttcg ctgatgctaa acaaagtcaa gcagcacaaa aataacttta
    30901 aaaaaaggag ttcaatatgc aacttcatgc tatgtgggat gagtatcctg cactttccaa
    30961 agatttacaa gaagtcttac aaacgattga aaaaaatatt caaattcgcg ataaacacgt
    31021 tgagcaaaac gtgaaagatt tgattcacgc tggcgggaaa ttactgcgcc ctgcttttgc
    31081 gcttctttct gcgcaagctg gtcctgatta tgataaagaa cgtgctgttt cgattgctgc
    31141 tgcgcttgaa gtacttcata tggcgacgtt gattcatgat gatgtcgttg atgattctcc
    31201 gttacgccgc gggatcccga caattcattc taaatatggt cgtaattatg ctgtttatac
    31261 aggcgattat ttattctgca tctgtttcaa aattttatcc gcacatgctt cttccgtgga
    31321 gaacattgaa tttaatagta aaaatatcga aaaaatctta atgggcgaac tagaccaaat
    31381 gcgcacaagc tacaaaatga atgtaactgt tcgtgaatat ttaacgcgta tttctggtaa
    31441 aacagcacaa ttatttgcac ttagttgtta ctctggcgca actggcagta aagcaacacg
    31501 catgacagtt gcaaaatgtt ataacatcgg acattacctt ggcatggctt tccaaattat
    31561 tgacgacgta ctggattaca caagtacgga tgaaggtctt ggcaaacccg ttttaaatga
    31621 tatgaaacaa ggtatttatt ctctgccact tatttatgca atgaaaggtc acttggctga
    31681 attcgagcca cttctttctc aaaaactaga tatgacggat gaagcttccg aacaagtttt
    31741 agcacttatt tctaagtata aaggtgtcga acaggcattc aaacttgcca acaaatatac
    31801 gaataaagcg cttcgtgaaa tcaaaaaact accagctggc gcatatcgtg atgatatgta
    31861 ccacttgacg aaaaatattt tagatcgaga tatctaaacc gtttagaaca ttgctccttc
    31921 catattgagt tttgttctaa attttggaac ttattgtgaa aatacaaaca tgaaagcgtg
    31981 attaacgtga ttcgattttt taaaatagtt acaccgatac tcctatctat ctctttagtt
    32041 gcttgtagtt ccgcaagtgg aaaaacagag aacattactg cgccaattga gaaagaccgt
    32101 aatttatcga tggtcgtaac gacggatgtt cattactttg cgccatcact aaccgacaac
    32161 ggaaaagcct ttgaaaaata tgtggctgcg ggtgatggga aacagttagc ttatagcgat
    32221 gaaataaccg atgctttttt ggcggatgta gaggctaaaa aaacagacgt ccttattatt
    32281 agtggcgacc ttacgaacaa cggtgaaaaa acaagtcatg aagagttagc caaaaaactt
    32341 actcaagtag agaaaactgg gacgcaggtt tttgttgttc cgggtaatca tgacattaac
    32401 aacccttggg cccgcaaatt tgaaaaagat aagcagttac caaccgacac tatatcacca
    32461 actgatttca gtaaaattta tggtgatttt ggatataaag atgctatttc aagtgatgag
    32521 ttttcgctga gttatttagc agctccttct tccaaagtat ggctgttaat gttagatacc
    32581 gctatttata aaacaaatat gcagcaagga aatcccacaa cggaaggcgg actaacagcc
    32641 ggaacattag attggataaa agaaagcagt gcgcttgcaa agaaaaacgg cgctaaactt
    32701 gtccctgttt tgcatcataa tttaactgat cataatgatg ttattcaaaa aggttatact
    32761 attaattata atcaacaagt aattgatgcg cttacggaag gctctatgga tttttctcta
    32821 agtggccata ttcatacgca aaatatccgc tctgcgaaaa gcacagatgg caaagaaatt
    32881 accgatatcg taaccaatgc tctttctgtt ttcccgcata aatatggcaa tattacttat
    32941 agtgccaaaa acaaaaactt cacgtatcaa tctcaaaagt tagatatgga agcttgggca
    33001 aaagcgcaag gctctacgga tgaaaacttg cttaatttta atcaatttga ttacgaaact
    33061 ttttataata gtggctacga taaggcaatg atggatttaa tgaccgatga atcttatgat
    33121 aagtacaacc aagcggataa ggaaaaaatg gcagatacga tgggattaaa taacatgtat
    33181 ttcttcgccg gaactgcccc tccaaaatct gatggtatgg ctttatggga ttctgcaccg
    33241 aattcatttt tgaaagatta cgttttaagt tcatccaatc cgcctaagaa aagtaatgac
    33301 tattatgtta gtccttaaat cataaaaaaa ctggtagccg ttatggctta ccagtttttt
    33361 tgtattaact agatgcggct gccgcactcg ctgctgcagc tgcactcacc gcagctgctt
    33421 gttccattgc aatcaatata tgcacattga ccattaaccc ttctaattgt tccttactca
    33481 tttgacctga ttgtttttcc gtatataggc ttatcgctag agctgtaacg aattctcgtc
    33541 cgaaacgcaa gcctggttgt tgctgtaatt catcaattaa gttcactaac cctgaatcga
    33601 tttttcgcgc gtccatgaca aaagctaaaa tcccaatact tgagtaatgt agcggtttta
    33661 cttttatccc tttttgtcgc agttcttcta caatattatc tactcttcga atgaatttgc
    33721 tatctttttc accgtacaaa agtgtccctg ttgttgctaa aaattgtaag ctatcatttt
    33781 tgcggaaacc tttcgcggcg aactcttgaa aatagtactc tgttatttca gccaatttcg
    33841 tggtattttc ttcaggaaga tttgctaaga aaacagctgt tgtcacatct tcacttttag
    33901 ttaaaaatgg atggtctttt ttgaaaagtt ggtgaatagt tttcgctttt cgggctgtct
    33961 ttttgggatt ttctgattct agtaataaat atgctgcaaa ataagtgtat tctgtgcgct
    34021 ggaatcccgc ttggatcaat gtattataat tagcaattac ttgctggacg ctctctcggc
    34081 tggcattatc gttcgccatg agcaatccta ccaaggatgc gcgaacattt ccgtttagtg
    34141 cagtgaacat gcctagttgt cgtttaattt ctttatttat ttcactaaat tcctctggat
    34201 caaccacttc attattcccc gcaaaaagac gagcaattag aaatcgaatt cgtttatcaa
    34261 taaaactaac gccactcgtt tttactaatt catagttctt cattaataat ttcgttgctt
    34321 gttcgctatc aaaaacatat gctgaatcca tcggccgcac tcctttatca ttttt
//
LOCUS       DABQVC010000005        32159 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.005,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000005 DABQVC010000000
VERSION     DABQVC010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 32159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32159
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.005"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            97..966
                     /locus_tag="IBJ56_000167"
     CDS             97..966
                     /locus_tag="IBJ56_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3416453.1"
                     /translation="MKYRKLSKKKKQKRLIGIAGILLLVILVGVIASVVRQQYLIMTA
                     PEPDPAFHSKEQNFLNELSPRAQEIQEKHGILTSITLAQAILESDWGQSGLAQKGNNL
                     FGVKGKSPQPMVTMTTKEFVDGKWIEINANFRKYKDWNESLDSHAELFLKGTSWNKDK
                     YNGVIAADDYKKAAQELQSAGYATDPDYAEKLINIIEKYDLALYDRIEDKIYYDTKST
                     GFGNVKKDVSGAIWTKPYGLSGALKVEEINYYKREDLKLLREAKTDSGVWYQIAVDTE
                     PIGWVKQELIDKK"
     gene            1263..2249
                     /locus_tag="IBJ56_000168"
     CDS             1263..2249
                     /locus_tag="IBJ56_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3416454.1"
                     /translation="MTIGLGITITLFAVPIHSQAAGLEDGLTSKQEKFINEIAPHAQK
                     VQKEHGILASITISQAILESNWGESKLAKDGNNLFGIKGSYQGASIKLPTKEHNGVVW
                     VGTDAVFRAYPGWYESMNDHALLFVNGPSWNPHLYGGLIKEYDFEKAAIALGKTGYSS
                     DPEYAAKLIELIKKANLNKYDTVYSERVSDKAIKAAGEVAVKDNCYVWSAPGGTKGAK
                     PIVSTTKYFGRQVSINQEVKVTDSNISWYHIHQNGESIGWIESTSIKDFYQLEDYAPT
                     VDALLKTDDNNRLVINMDIDTSELHKTKLAKADTKEKTAFNLPLLNVQSIIW"
     gene            2361..3440
                     /locus_tag="IBJ56_000169"
     CDS             2361..3440
                     /locus_tag="IBJ56_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HAM3416455.1"
                     /translation="MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGL
                     GSAVAKKVGAEDGPKIMIAGHLDEVGFMVTQIDDKGFIKFQTVGGWVSQVMLAQKVTI
                     VTRSGEEITGVIGSKPPHVMTAAERQKSFDIKDMFIDVGAVDKAEVESYGIRPGDMIV
                     PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRG
                     AKTAAHFVQPDIGFAVDVGIAGDTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDF
                     VTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATRYIHSHSSMLHRDDF
                     ENAVKLITEVVKRLDKEKVTEIRLG"
     gene            3466..4224
                     /locus_tag="IBJ56_000170"
     CDS             3466..4224
                     /locus_tag="IBJ56_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HAM3416456.1"
                     /translation="MEQIQSVKNDRVKTWKKLQTRKGRDKTGTYLVEGFHLVEEALRQ
                     DGLVLELLVSSGVSVPEEWLKGDYDVFEISTEISHLISETMTEQGVFAVVATSEPDMM
                     LLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH
                     IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPEL
                     QDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK"
     gene            complement(4269..4628)
                     /locus_tag="IBJ56_000171"
     CDS             complement(4269..4628)
                     /locus_tag="IBJ56_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416457.1"
                     /translation="MPSIRYIVKTDVAETFEIIKAGQVGSNIVFSEVRTFDFGELATL
                     ACEKFYFRSSNRAALFVTINNFHGETEVTIISTGSSNGFFTGIDWGAAFDYMHSVVAD
                     LKRVAIREVAIEKQEEI"
     gene            4785..5108
                     /locus_tag="IBJ56_000172"
     CDS             4785..5108
                     /locus_tag="IBJ56_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3416458.1"
                     /translation="MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEI
                     PQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYELTEKGKALQEVMLEVQCWADKW
                     VEVPN"
     gene            5476..6528
                     /gene="pheS"
                     /locus_tag="IBJ56_000173"
     CDS             5476..6528
                     /gene="pheS"
                     /locus_tag="IBJ56_000173"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HAM3416459.1"
                     /translation="MLEQLQTLKNEAETQINEASDLKTLNDLRVKYLGKKGPMTEIMK
                     QMGKLSAEERPKMGSLANEVRTALTEAISSKQQILETEAINEKLKSETIDVTLPGTAP
                     SIGTKHLLTQVIEEMEDMFIGMGYEIAEGPEVELDYYNFEALNLPKDHPARDMQDSFY
                     ITENTLLRTQTSPVQARTMEKHDFSKGPIKVICPGKVYRRDNDDATHSHQFTQIEGLV
                     VGENITFADLKGTLTVLAKTMFGEEREIRLRPSFFPFTEPSVEMDISCFKCGGKGCRV
                     CKGTGWIEILGSGMVHPNVLEMSGIDSTRYSGFAFGLGPERVAMLKYAVDDIRHLYTN
                     DLRFTKQFQSTETGEI"
     gene            6528..8936
                     /locus_tag="IBJ56_000174"
     CDS             6528..8936
                     /locus_tag="IBJ56_000174"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HAM3416460.1"
                     /translation="MLVSYNWVKEFFQDFPLTAEELGEAITRTGIEIEGVEELSASLK
                     NVVVGEVLSCERHPDAEKLNKCLVQTDETEPVQIICGAPNVAAGQKVIVAKVGARLPG
                     GLKIKRAKLRGEVSEGMICSLAELGFESKVVPKAYAEGIYVLPAHVETGVSAITLLGL
                     DDAILDMAITPNRADALSMNGVAHEVGAIIHQKPAQPTEPDVSEKGKADDFISVEVEN
                     PAETPYYAIKMVENIEIKESPLWLQTKLMKAGIRPHNNVVDVTNYINLLYGQPLHSFD
                     YDKIGSKKIVVRSAKEQEEITTLDGEKRTLQAGHTVITNGVEPIAIAGVMGGEFSEVT
                     ENTTTVALEGAIFSSSSIGKASRELYLRTEASIRYDKGSDAWKVEKALAHGGALIAEL
                     SGGTLVGGVVEVDNREKAVNKIETSLTRINRILGTAITLAEIETIFDRLGFVLEVKND
                     ALIIEVPTRRWDITIEADILEEVARIYGYDEIPVTLPATSTTGGLSDSQKARRVMRAY
                     LEGAGLNQALTYSLTSKKDATRLALSDEKTVALSMPMSEEHSHLRTSIVPQLIRSASY
                     NIARKNMDVALYEMGTVFYATEGDNLPIEQEHLAGLITGNWHTVDWQKTPKPVDFFVL
                     KGIVEGLVNKLGIKSELHWKQTEKEELHPGRTASLILEGQEIGYLGALHPAVEANYDL
                     KETYVFEINVAALLDATKEKVVYHPIPRYPEMTRDLALLVDKNTDHATISQVIQEHGG
                     KLLVDIELFDIFEGESLGENKKSLAYTLTFLDSERTLVEEDVQKATNKVIEALQEKLH
                     AIIR"
     gene            9097..9798
                     /locus_tag="IBJ56_000175"
     CDS             9097..9798
                     /locus_tag="IBJ56_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416461.1"
                     /translation="MTYVEMKDVSKYYQMGENVVTANDKITFGIKKGEFVVIVGPSGA
                     GKSTVLNILGGMDSASEGKIMVDGQDIAQYNAKQLTKYRRTDVGFVFQFYNLVPNLTA
                     KENVELAAQIAPNALDAETVLTQVGLSHRLDNFPAQLSGGEQQRVAIARALAKAPKLL
                     LCDEPTGALDYDTGKSVLKLLQETCRNTGTTVIVITHNTAITPIADRIIEINNAKVRS
                     IKENPEPMSIDDLEW"
     gene            9812..13222
                     /locus_tag="IBJ56_000176"
     CDS             9812..13222
                     /locus_tag="IBJ56_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HAM3416462.1"
                     /translation="MKRSALWKDIYREIWRSKSRFISIFMLIMLGVAFFSGLKATGPD
                     MLLTADNYFNKYELANFNVQSTYGLDETDKEALEDISGVAQVELGYTADTLMKDKNIV
                     TKLFSNSESDNLNQYKIASGRLPEKSGEIALDDNDLVHKNVKIGDEVTFVKSDGNKLT
                     NTLKKSTYKVVGFVSSPAYIQKSERGSSTVGKGKTDAFGVIPEQDFDLPEYTIANLTF
                     NNLAAKQAFSDEYVSTEEKDKKSVEKALADQPEKRLNKIKTKEQKKLDDATAEINKGK
                     AELQENEAKLANAKAQLEEGFSEYNAAKASYDAKIKHGEAEIANGEAELRSAKKQLDT
                     AKTQIDQGETALSQAEMELEEGRAAWEDANNLLNTANGYLRSAKSTLENALKQPDLTD
                     FELDRNSLTNSFQMLASELDLSSAERAEYENAMNQLLDDYENGNISDAEIREALNAAL
                     AQVGNAENEYQSARATLDAEKQKIEQGEQTLAAKKQELQQAKTAYQEGLAKYQAGLEK
                     ISQAKQQLADGKETGSTELQSALAKLNVGQAEYEKNLALFEKEKAKAEGKLASAEKEV
                     KIGQEKLDALKLPKYYVLDRNDNPGYSEYKENADRLTSLSTAFPIFFFLIAALVCLTT
                     MTRMVEEQRTQIGTLKAFGYSNGSIILKYLVYGSTASIIGSVLGILIGFQFFPNIIFN
                     AYKSMYEMPPVDIGFYWSYSLLSLFVALFCTTFTAYVACRAELRANAATLMRPKAPKI
                     GKRIFLERISFIWKRMNFTSKVTARNLFRYKQRMLMTVLGVAGCTALILTGFGLRNSI
                     SDIAKMQYGQIMKYDAAIYQDMSAPPAAKETFDEIMNDSNIKSKLAMSQTNIETVKSG
                     QSAQTTSIIVPKNLNELPDYIVLRDRASHTTEKLTDDGAIITEKLAKLFDVKPGDTIT
                     VKNAENDKFQIKVSAITENYAMHYIYMTKSYYQQVFKEKPTYNLDLLMLKDTSEKVES
                     NFAEKLTDSKAILNVTFSNNVSSLLNETLDSLNIVIVVLITSAALLAFVVLYNLTNIN
                     VSERIRELSTIKVLGFYPKEVTMYVYRENIILTLMGIAAGFVLGFFLHRFIITTAEVD
                     QMMFSPAISWTSYLFSGILTLVFATVVMVVMHIKLKRIDMIEALKSVE"
     gene            13320..13772
                     /locus_tag="IBJ56_000177"
     CDS             13320..13772
                     /locus_tag="IBJ56_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAM3416463.1"
                     /translation="MERQKVKQLIKSYQQTYIFAMNQIHQAISEISASTVDLSIEQFF
                     VLREIATYDGISATELAATLAVNKSAITPKLKKLEEKGYIRRERNQQDKRAVVLTISE
                     KGNNVYEECEKQLELLVNEWLEILGEKDSEQFFELFQKITKSVVEPRQ"
     gene            13788..16988
                     /locus_tag="IBJ56_000178"
     CDS             13788..16988
                     /locus_tag="IBJ56_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HAM3416464.1"
                     /translation="MKWIMKLRWAILAFWLAAAVVLMIIAPPMADLVREKGELKLPDG
                     YPSSLATEMQKKHNPDDKGSAYIAVYTADHKLTGTELNDIQDSLNSIEKDKDELHVTN
                     VLSSFNQPELKDKFLSKDGKTMVASLTVDDTDASVKSIRNALDKKMDVNGVDTYLTGN
                     KLIQEDVVQGSEDGLHKTEGITVVFILVVLFLVFRSAVAPFIPLVTVGISYLVAQSTV
                     AFLIDIFNFPVSTYTQIFMVCIMFGIGTDYCILLMSRFKEEMGAGLNPREAVHATYRT
                     AGKTVIYSGVAVLVAFTSLYFVQFDLYRSAVAVGVGIVVLLAALYTLVPFFMSTLGTH
                     LFWPLNKNISHKENKIWGAAGKFTFARPWIALLIVAAITLPPILLHTGTESFNSLDVI
                     SDKYPSKKGFEIVSDSFGAGQVAPTQIFIENDDNMRTTDYIAQIEKISDDLSHLKGID
                     MVMSASRPAGKRVDDIYIKNQAGQVNDGVGQATDGVGEVKKGLDSASSELKKSEPALD
                     KAVAGVSDLQKGTVATQEGINQLQTALAQIQTGIESGATGAGDLKQGVAEAKSQLATL
                     QNGEAQIQAGYVEIQKNLQNVADQLKGFEDPSSQAIDTSKLEEQFKKIGASFQAFAAA
                     HPEVRNDPRFQKLAADIQGLETAGNELKTSAGQQMAALQAKMKELNQGIQQLATAMNQ
                     LNEQSKQISDGLSAFSTGLGQIETGLDQLEKGLNQAADGQGQVVSKMPEISNALTQIA
                     AGQGALKDGFAGISGQMGQLTDGLTSGADGLGKVESGLNTANGLIDDWSKVPYASSGI
                     YVPDALLKNADFQKVLDQYISSDGKLATINVILTKNPYSNEAMDSIDDINEQLSASMK
                     GTKLENAKIGIGGMTSANYDTRDMSTADYHLVLVIVLASVFVTLVIVLRSLVMPIYLI
                     ASLVLTYFAALGFAEIIFMRILGYSGLTWATPFFGFVVLVALGIDYSIFLMSRFNEYN
                     GLSVRDRMIKAMKNMGGVIFSAVIILGGTFAAMMPAGVLSLLEIATVVLIGLVLYAVV
                     ILPLFVPVMVKLFGRGNWWPFITRKGDHQENVPPKK"
     gene            17092..17766
                     /locus_tag="IBJ56_000179"
     CDS             17092..17766
                     /locus_tag="IBJ56_000179"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HAM3416465.1"
                     /translation="MIKLGNDWDELLKDEFNQPYYLTLRQFLKKEYQTKKVFPDMYDI
                     FNALKYTACKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNC
                     EIPNNGYLIRWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNRIIEIINQKEEPVVF
                     LLWGNNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPID
                     WQIPSI"
     gene            complement(17804..18730)
                     /locus_tag="IBJ56_000180"
     CDS             complement(17804..18730)
                     /locus_tag="IBJ56_000180"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HAM3416466.1"
                     /translation="MANTVILVDQPTLEKMKQTYLPFSNPKLPPGAVFAAKKTGVSIT
                     GYKSRKVMFQGVNGEVEAKKWVATLPESKTKAPSVSKGILPANFASKNVIGSDEVGTG
                     DFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPHSVLLCPNP
                     KYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYRYLAKEP
                     SIIREDVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGIPLPKGAGPHVDAVA
                     AEIIERFGLETLAKYTKQHFANTEKALKMVKK"
     gene            18884..19147
                     /gene="zapA"
                     /locus_tag="IBJ56_000181"
     CDS             18884..19147
                     /gene="zapA"
                     /locus_tag="IBJ56_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HAM3416467.1"
                     /translation="MANERNKVVTTIYGREYTIVGVETTDHLRKVAREVDEKMHEIGS
                     QNHALDSGRLAVLTAVNATHDYLKLEQKYLELEQELARIKGRD"
     gene            19147..19689
                     /locus_tag="IBJ56_000182"
     CDS             19147..19689
                     /locus_tag="IBJ56_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HAM3416468.1"
                     /translation="MILNAIILILLVCGFFAGFRTGLIKQLILLLGYILAFFISYTYY
                     EDLAPHLTFIPYPGSDTADGLSIILQELRTETAYYNVLGFAIIFIVAIIVVHMLASLV
                     GGLTKIPVLRQINGLLAAVFGVVKSYLIIFVVLFIMAIYPANWSENLIDSSTVAQWML
                     ENTPILSEQFYDWMTDILPK"
     gene            19781..21493
                     /gene="polX"
                     /locus_tag="IBJ56_000183"
     CDS             19781..21493
                     /gene="polX"
                     /locus_tag="IBJ56_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HAM3416469.1"
                     /translation="MATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSR
                     SLSEIDDFTKISGIGKTTGEIIQRYLDSGECPELEALKKEVPAGLVPLLDVPGLGGKK
                     LSRLYHELGVVDKDTLLQEAENGHIEALKGFGKKSAEKMAEAVREMGERPDRYPLNDV
                     LPIIQKVEAYLADIAPIETFAQAGSLRRLRETVKDLDYVIATEKPEEVQKALLAFPLI
                     TDVIGAGETKVSAVLEDNITISVDFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSN
                     EKISEYGVEQEDGSVRHFESEKAFFEHFKIPFLPPEVRRDGTEIERVTKDTKFLELSD
                     IRGDLHMHTTWSDGAYAIPEMIEACIAKGYEYMVITDHGQFLRVANGLDEKRLLEQQA
                     EIKKIAANYPEIDVYSGVEMDILADGSLDFDDETLKQLDFVIASIHSSFQQSEEEIMK
                     RLKTACENPYVRLIAHPTGRIVVKRKPYHVNMKELIQLAKNTGTALELNANPQRLDLN
                     REHLEMAHAAGVPIAINTDAHDTKHLDFMSIGVRAATKAWLDKSAILNTKTAAEFKHF
                     LQNK"
     gene            21516..23873
                     /locus_tag="IBJ56_000184"
     CDS             21516..23873
                     /locus_tag="IBJ56_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HAM3416470.1"
                     /translation="MEKKVEAILEFDKIKKQLTEFASSSLGEQAILELAPATDFQVVQ
                     KTQLETEEGAKIIRLRGSAPITGLTDVFAHLKRLEIGGDLNGLEIYQIGSNLRVSRQM
                     KNFMNDLLEIGVELPLLGALSDELLVLKEVEEDIAISVDESGKVLDTASEALSTIRRT
                     LRRTEDRVREKLESYLRDRNASKMLSDAVITIRNDRYVIPVKQEYKGHYGGIVHDQSA
                     SGQTLFIEPQSVVDLNNERKALQAKEKQEIERILAEISASLAAWINEIHHNTFILGRF
                     DFIFAKARFGKAMKAVTPHLSDAGVVHLIAARHPLLDAAKVVANDIYLGEDFTTIVIT
                     GPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTF
                     SSHMTNIVSILENVNQKSLILYDELGAGTDPQEGAALAIAILDASHAKGASVVATTHY
                     PELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPGRSNAFDISRRLGLSENIITEA
                     RSLVDTESADLNDMISSLEEKRNLAETEYEEARELARGADNLLKDLQKEISNYYQQKD
                     KLIEQASEKAATIVEKAEAEAEEIIHELRTMQLNGAAGIKEHELIDAKTRLGNAKPKT
                     INKTIPQAPKQKPHVFQEGDNVRVLSLGQKGTLLNKISDKEWNVQIGIIKMKIKTTDL
                     EYIQPEKPKKQRIITSVHSSGSPAKSELDLRGERYEDALQKVDKYLDEALLAGYPQVA
                     IIHGKGTGALRTGVTEYLKNHRMVKSIRFGAAAEGGNGVTIVEFK"
     gene            23954..24265
                     /gene="trxA"
                     /locus_tag="IBJ56_000185"
     CDS             23954..24265
                     /gene="trxA"
                     /locus_tag="IBJ56_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HAM3416471.1"
                     /translation="MVKEITDATFEQETSEGLVLTDFWATWCGPCRMVAPVLEEIQEE
                     RGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKY
                     V"
     gene            24341..26152
                     /gene="uvrC"
                     /locus_tag="IBJ56_000186"
     CDS             24341..26152
                     /gene="uvrC"
                     /locus_tag="IBJ56_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HAM3416472.1"
                     /translation="MSSEHIQNKLALLPDQPGCYLMKDRQGTIIYVGKAKILKNRVRS
                     YFSGTHDSKTQRLVQEIVDFEYIVTSSNVEALLLEINLIKKHDPRFNIRLKDDKTYPF
                     IKITNERHPRLIITRQVKKDKGKYFGPYPNVYAANEVKRILDRLYPLRKCSTLPNKVC
                     LYYHLGQCLAPCVFDVEASKYKEMQDEIVAFLNGGYKTVKNDLMKKMQEAAENMEFEK
                     AGEFRDQINAIETTMEKQKMTMNDFVDRDVFGYAIDKGWMCVQVFFIRQGKLIERDVS
                     QFPFYNDADEDFLTFIGQFYQKANHIPPKEIYLPDDVDSEAVQAVVPDTKIIVPQRGN
                     KKDLVKLAYKNAKIALNEKFMLLERNEERTVGAVERLGEAMGIPTPSRVEAFDNSNIH
                     GTDPVSAMVTFLDGKPSKNDYRKYKIKTVEGPDDYATMREVIRRRYWRVLKEELPMPD
                     LILIDGGKGQIDSAKDVLTNELGLDIPVAGLAKDDKHRTSQLLFGDPLEIVPLERNSQ
                     EFYLLQRMQDEVHRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLK
                     EASVEEIKEAGVPLNVAEEVHKHITAFNEKAKNTEQK"
     gene            26333..27547
                     /locus_tag="IBJ56_000187"
     CDS             26333..27547
                     /locus_tag="IBJ56_000187"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HAM3416473.1"
                     /translation="MGLVVLKFGGTSVSTVDKIGKTADQAIYEKKQGNKVIVVVSAMG
                     KSTDKLVAMAEEISEAPDKREMDMLLSTGEQITIALLAMTLKEKGHDAISYTGWQAGI
                     ETEAVHSNARIADIDSARIESALDAGQIVVVAGFQGFTTDGEITTLGRGGSDTTAVAI
                     ASALNAVKCAICTDVVGVFTTDPRYVKKAQKLEQITYDEMLELANLGAGVLHPRSVEY
                     AKNFRIPLEVRASHEQVPGTMIEEDLTMENTKVVRGIAFEDQITRVTSHWKQKEAMRV
                     SKVFTKLAENNIDVDIIIQGITGLGHGNLSFTIKTSALLATLAVLEESKELLQIEKLE
                     SEQDLAKVSIVGSGMVSNPGVAAQMFEALTENNIPIKMISTSEIKVSTVVPARKMVEA
                     AQVLHDQFELDK"
     gene            complement(27603..28097)
                     /locus_tag="IBJ56_000188"
     CDS             complement(27603..28097)
                     /locus_tag="IBJ56_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YslB family protein"
                     /protein_id="HAM3416474.1"
                     /translation="MVIMVYESGVSEMTENEQNKNEEKALVPSFGLDLLRDYLIPELL
                     GDEAPHIMYWAGKDLARKFPLASLEEVAEFFEEASWGNFSILKEKKDEMRLLLEGETV
                     AARFRTQEEPTFKLEAGFIAEQLQSQKKLYTESYDEIDKRKKQVTIIVKWDRKETIDN
                     EERY"
     gene            28245..29045
                     /gene="racE"
                     /locus_tag="IBJ56_000189"
     CDS             28245..29045
                     /gene="racE"
                     /locus_tag="IBJ56_000189"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HAM3416475.1"
                     /translation="MKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPR
                     DKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAA
                     LKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIA
                     KKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALL
                     DYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK"
     gene            29058..29804
                     /gene="rph"
                     /locus_tag="IBJ56_000190"
     CDS             29058..29804
                     /gene="rph"
                     /locus_tag="IBJ56_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HAM3416476.1"
                     /translation="MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVE
                     TKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVV
                     DLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLA
                     ATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAEL
                     IALGKKGISELIEIQKETLGDKVTARIKGE"
     gene            29808..30419
                     /locus_tag="IBJ56_000191"
     CDS             29808..30419
                     /locus_tag="IBJ56_000191"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HAM3416477.1"
                     /translation="MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETG
                     TTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGIAHDDAKNNEK
                     LLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYTGEVEGVIAEQLCGTNGFGYDPLFF
                     LPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLAEVVEKVTKK"
     gene            30456..30980
                     /locus_tag="IBJ56_000192"
     CDS             30456..30980
                     /locus_tag="IBJ56_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HAM3416478.1"
                     /translation="MKLLVVSDSHSERDCLIHLKEKYENTVDAMIHCGDSELEADDPA
                     IQGFHTVRGNCDFGGGFPNDWVGEVDGYRIFTTHGHLYNIKMTLMNLRYRARELNADF
                     AFFGHSHELGVDMLDDTIILNPGSISLPRGRIRVKTYALIDSTPEGIQVRFMDRDDNE
                     LTDLTQTFPLTKHN"
     gene            31091..31164
                     /locus_tag="IBJ56_000193"
     tRNA            31091..31164
                     /locus_tag="IBJ56_000193"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:31125..31127,aa:Arg,seq:tct)
     gene            complement(31266..>32159)
                     /locus_tag="IBJ56_000194"
     CDS             complement(31266..>32159)
                     /locus_tag="IBJ56_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAM3416479.1"
                     /translation="NQFVDYFDEKIKLNSIDAVQYQQFINHLSVDYAISTVDTRHRKI
                     RAIFNKAVHLGYMKKNPTIGAHISGQDVAKNKAQFMETDKVHLLLEELAKFHSISRAV
                     IFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKKSRVIYIDN
                     STAQYLHSYLNWHTDYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICSTINSEP
                     VTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSSNLRQHNQSKVDAF
                     FTLKTDENTTNFTTNATKTTE"
BASE COUNT        10983 a         5940 c         6573 g         8663 t
ORIGIN      
        1 tcactaaaat agacccctag atggattgca attgtaatga aagtaacgta ttctagtacc
       61 atcaagggat tcgtagacag aaaggcgtga cgacatctga aatataggaa attatctaaa
      121 aagaagaaac aaaagaggct aattggaata gcgggaattt tacttctagt aattctagta
      181 ggtgtcattg catcagttgt tagacagcaa tacctaatta tgactgcacc agaaccggat
      241 ccagcatttc attccaaaga acaaaacttt ttaaatgaac tttcgccacg tgcacaagaa
      301 attcaagaaa agcacggtat cttaacgagt attacactcg ctcaagccat tctcgaatca
      361 gactggggcc aaagcggttt agcgcaaaaa ggtaacaatc tatttggtgt caaaggaaaa
      421 tcgccacaac caatggtgac gatgacaacg aaagaatttg tagatggtaa atggattgaa
      481 attaatgcta atttccgaaa atataaagac tggaatgagt cactcgattc gcacgctgaa
      541 ctttttttga agggcacttc ttggaataaa gataaatata atggagtaat tgctgcagat
      601 gattataaaa aagccgcgca agaattacaa tcagctggct atgcaactga cccagattat
      661 gcggagaaat taatcaatat tatcgaaaaa tatgatttag cattatacga ccgaattgaa
      721 gataaaatct attatgatac aaaatcaact ggcttcggca atgtgaaaaa agatgtatct
      781 ggcgcaattt ggacgaaacc atatggactt tccggcgcgc taaaagtaga agaaattaac
      841 tactataaac gtgaagattt gaaactttta cgtgaagcaa agaccgatag cggtgtttgg
      901 tatcaaattg cagtagatac cgagccgatt ggttgggtga aacaagaatt aatcgataaa
      961 aagtaaaaaa taaccgaaaa agagcaaaat gacttgtctt atttataggc ataaagtcct
     1021 ttttaagctc tttttctttt ttattttcat caatacgaac tttgagaaag ggctatatca
     1081 aagctacgag cgtatattgt aacataagta atgtaaaagt aatgtgtatt acaagaatgt
     1141 tttgatagaa tgaagtggtt gttttaaaga acactagttt ccagtttttc aaaagctgga
     1201 aggataaatc aaagaaggat gtgcaataaa tcattatgtt acagctcgca aagaagcatt
     1261 tggtgacaat tggacttgga attacaatta cattatttgc agtaccaatc cactcccaag
     1321 ctgctggtct agaggacggc ttgacttcca agcaagagaa gtttattaat gagattgcgc
     1381 cgcatgctca aaaagtgcaa aaagaacatg gtattttagc tagtattacg atttcgcaag
     1441 caatcctaga gtccaattgg ggcgaaagta aattagcaaa agatggcaat aatttattcg
     1501 gaattaaagg ttcctatcaa ggagcttcta ttaaattacc taccaaagaa cataatggcg
     1561 ttgtttgggt tggaacagat gctgttttcc gtgcgtaccc aggttggtat gaatcaatga
     1621 atgaccacgc acttttattt gtcaatggac cgtcttggaa ccctcattta tacggaggac
     1681 taatcaaaga atatgacttt gaaaaggcag ctattgccct tggaaaaaca ggctattcat
     1741 ctgatccaga gtatgcagcg aaattaattg aactgatcaa aaaagcaaat ttaaataaat
     1801 acgataccgt ttatagcgaa cgtgtatcag acaaagcaat taaggctgct ggagaagtag
     1861 ctgtcaaaga taattgctat gtttggtctg ctccgggtgg cacaaaaggt gcgaaaccta
     1921 tcgtcagcac taccaaatac tttggccgtc aagtttctat taatcaagaa gtaaaagtaa
     1981 cagattccaa tatttcttgg taccatatcc atcaaaatgg agaatccatc ggttggattg
     2041 aaagtacatc gattaaagac ttctatcaat tagaagacta tgcgccaaca gtagatgcat
     2101 tactaaaaac agatgacaac aatcgtttag taatcaatat ggatatcgat acatctgagc
     2161 tacacaaaac aaaactagca aaggcagata ccaaagagaa aactgccttt aatttacctt
     2221 tactgaacgt tcaatccatc atctggtaat aaccttgcaa aaaaagctga atagattact
     2281 cggctttttt tgcgttttca aaggattttt agaaagaaac tgttataatg aaaatggagt
     2341 ttataaggag ggttatttat atggatgaac aattaaagat gttaaaagca ttaacagatg
     2401 caaaaggtat tcccggtaac gaacgtgcag tgagaaatgt gttccgcgaa tacatcgaac
     2461 cgctagcgga tagttttgaa acagatggct taggaagtgc tgttgcaaaa aaagtcggag
     2521 cagaagatgg acctaaaatt atgattgctg gccatttaga tgaagttggc tttatggtaa
     2581 cgcaaattga cgataaaggt tttatcaaat ttcaaactgt gggcggctgg gtttcccaag
     2641 taatgctcgc acaaaaagta actatcgtga cgcgctctgg cgaagaaatc acaggtgtta
     2701 tcggttctaa accaccacat gtgatgacag cagcagaacg ccaaaaatca ttcgatatta
     2761 aagacatgtt tattgatgtc ggtgcagtag ataaagctga agtggagagc tatggcattc
     2821 gtccaggcga catgattgta cctgcttttg actttaccgt aatgaaaaac gaaaaattct
     2881 tacttgcaaa agcatgggat aaccgtattg gccttgcaat tgcgattgaa gtacttaaaa
     2941 acttacaaaa agaacaacat ccaaatatcg tttacggtgt aggaactgtt caagaagaag
     3001 ttggtttacg tggtgccaaa acagctgcgc atttcgttca accagatatt ggttttgccg
     3061 ttgacgttgg tatcgcagga gatacaccag gcgttacaga caaagaagca atgagcaaaa
     3121 tgggtgaggg tccacaaatc gtcatttacg atgcatctat ggtagcgcat gccggacttc
     3181 gtgattttgt cacagatgta gcggatgaac tatctatccc ttaccaattt gaagcaatcc
     3241 caatgggcgg tacagactca ggttccatcc acttaactgg aaacggaatc ccgtctctat
     3301 ccattaccat tgcaacacgc tacattcatt ctcattcctc gatgctacac cgtgatgatt
     3361 ttgaaaatgc agtaaaacta attaccgaag tagtcaaacg tttagataaa gaaaaagtaa
     3421 cagaaattcg cttaggttga gtttcgagaa aagaggacaa cttttatgga acagattcaa
     3481 tcagtaaaaa acgaccgtgt caaaacatgg aaaaaactac aaacgagaaa aggccgcgat
     3541 aaaaccggga cttatttggt ggaaggcttt catttagtgg aagaagcatt gcgtcaagat
     3601 ggtttagtac tggagctgct tgtttcaagt ggtgtttctg ttccggaaga gtggttaaaa
     3661 ggcgattacg atgtatttga aattagtaca gaaatcagcc acttaattag cgaaacaatg
     3721 acagagcaag gtgtttttgc agtagtcgca acatctgaac cagatatgat gcttttatat
     3781 gggaaaaaat tattgctagt agatgcagtg caagatccag gcaacgtagg tacgttaatt
     3841 cgtacggctg atgctgctgg atatgattgt gtcgtacttg gcaagggaag tgcagatctt
     3901 tataatccta aagtaattcg tagtacgcaa ggtagtcatt tccatattcc cgttattcaa
     3961 gcagatttat ttgattggat tgcgaattta gaagaagagg gcgttccagt tattggggca
     4021 gttcttgatg accaagcgaa atcattaaac gacatgacaa aacgcgacac tttagcgttg
     4081 atggtcggaa atgaaggtaa tggcatttct cctgaattac aagatcgtct ttctgaaaaa
     4141 gtatatattc caatttatgg tgacagtgaa tcattgaatg tcgcagttgc tgctggaatt
     4201 ctactttacg gcttaagaaa ataaagaaaa agtggtggct aagttgtttt gacttagtca
     4261 ccactttttt agatttcttc ttgtttttca atagctactt cccgaatagc aacgcgtttt
     4321 aaatcggcta caacactgtg catataatca aatgccgcac cccagtcaat tccagtaaaa
     4381 aagccatttg aactaccagt ggagataatc gttacttctg tttctccgtg aaaattatta
     4441 atcgtaacaa aaagtgctgc acgattcgac gagcggaaat aaaacttttc gcaagcaagt
     4501 gttgcaagct ctccaaaatc aaaagttcta acttcagaaa acacgatatt cgatcccact
     4561 tgaccagctt taattatttc gaaagtttct gcaacgtccg ttttaacaat atagcgaatg
     4621 gatggcatat cagtacctcc ttctataaaa ctatcttata tatagtttaa gacagaagaa
     4681 gaatttggtc aatcgggcca caacttacta aatataagca acataatatt tattagttac
     4741 tttctgatga tagatatggt acaataacgt tagaggtgag aattatgact gatgcacata
     4801 cagtatgtcc gaagtttgaa tcggcgttcc aattactagg taaacgctgg actggactta
     4861 tcatcaatgt cttactgact ggtccaaaaa ggtttaaaca agtcgccgct gagatcccgc
     4921 aaatgagtga tcgggtgctt gcagaacgtt tgaaggaact tgaggaaatg gatatttgct
     4981 taagacaagt ttatccagaa actcctgtac gcattgaata tgaattaacc gaaaaaggga
     5041 aagcactcca agaagtaatg cttgaagtcc agtgctgggc ggataaatgg gtggaagtac
     5101 ctaattaaaa aagaaataat ctctccaacc aatatggaga gattattttt tagcttgaat
     5161 ctttcctaga accatactat aatagaaact atctaaataa ctaaagacaa tgaaagagcc
     5221 aagtagcata gtgagtctgt atagggagaa gtggtcatag actgaaagcc actttacaaa
     5281 cgaatttgtg aacatttcac ctctggagtc gccccccgag aagcacttta tgtgtgaagg
     5341 tggtccggtt actaagccgt tatcgaattt tgagtgggaa caattttttg ttcttattag
     5401 ggtggtaccg cgagaagtct cgtccctttg tggatagagc ttttttattt tgtctaaaaa
     5461 gaaggagtga acggtatgtt agaacagtta cagacgctga aaaatgaagc agaaacgcaa
     5521 attaacgaag catcagactt aaaaacatta aacgacttac gggtaaaata ccttggtaaa
     5581 aaaggcccga tgaccgaaat catgaaacaa atggggaaac tttccgcaga agaacgacca
     5641 aaaatgggtt cacttgcgaa tgaagtaaga accgcattaa cagaagcaat ttcaagcaaa
     5701 caacaaattt tagaaacaga agcaatcaat gaaaaactaa aatcagaaac cattgacgtt
     5761 acattaccag gtactgctcc gagtattgga acaaaacact tgctaacaca agtaattgaa
     5821 gaaatggaag atatgttcat tgggatgggt tacgaaattg cagaagggcc agaagtagaa
     5881 ctagattact acaacttcga agcgttaaat ttaccaaaag atcatccagc tcgtgatatg
     5941 caagatagct tctatattac agaaaatact ttactacgta cccaaacttc acctgtacaa
     6001 gcaagaacaa tggaaaaaca tgacttctct aaaggaccaa tcaaagttat ctgtccaggg
     6061 aaagtgtacc gccgcgacaa tgatgatgca actcactccc accaatttac gcaaattgaa
     6121 gggctggttg ttggcgaaaa catcacgttt gctgacttaa aaggaacatt aactgttctc
     6181 gcaaaaacaa tgttcggtga agaacgtgaa attcgtcttc gtccatcctt cttcccattc
     6241 acagaaccat ccgttgaaat ggatatctct tgtttcaaat gtggcggtaa agggtgccgc
     6301 gtttgtaaag gaacaggttg gattgaaatt ttaggaagcg gaatggtaca tccaaacgtg
     6361 cttgaaatgt cgggaattga ttccacgcgt tacagcggtt ttgctttcgg cttaggacct
     6421 gaacgggttg cgatgttgaa atatgcggtg gatgatattc gccaccttta tacaaatgat
     6481 ttacgcttta cgaagcaatt ccaaagtaca gaaacggggg aaatctaatg ttagtttcat
     6541 ataattgggt caaagaattt ttccaagact tcccgttaac ggcggaagag ctaggagaag
     6601 caattacaag aacaggtatt gaaatcgaag gcgtagaaga attaagcgct agtttgaaaa
     6661 atgtcgtagt cggcgaagtt ttatcatgcg aacgccaccc cgatgcagag aaattgaata
     6721 aatgtctcgt tcaaacagac gaaacagaac ctgttcaaat catttgcgga gctccaaacg
     6781 ttgccgctgg tcaaaaagta atcgtagcca aagttggcgc aagacttcca ggtggactta
     6841 aaatcaaacg cgcaaaacta cgcggcgaag tgtcagaggg aatgatttgc tccctggctg
     6901 aacttggctt tgaaagcaaa gttgtaccaa aagcatacgc agaaggaatt tatgtattac
     6961 ctgcgcacgt ggaaacgggt gtaagtgcaa tcactttact tggactagat gatgcgattt
     7021 tggatatggc aatcacacca aaccgcgcag atgcattgag catgaatggt gtagctcacg
     7081 aggttggtgc gattattcat caaaaaccag cacaaccaac cgagcctgac gtatctgaaa
     7141 aaggaaaagc agacgatttc atttctgtag aagttgaaaa tccagccgaa acaccttact
     7201 atgctattaa aatggtagaa aacattgaaa tcaaagaatc gccactatgg ctgcaaacaa
     7261 aactaatgaa agctggcatt cgtccacata ataacgtggt cgatgttacc aactacatca
     7321 atttattata cggacaacct ttgcattcct ttgactatga taaaattggt agcaagaaaa
     7381 tcgttgtacg ttctgcaaaa gaacaagaag agattaccac gcttgatggc gagaaaagaa
     7441 ctttacaggc tggacataca gttattacaa atggcgtaga accaattgct atcgctggcg
     7501 ttatgggtgg agaattttcc gaagtaacag agaacacaac gacagtagcg ctagaaggtg
     7561 ctattttcag cagctcttcc atcggtaaag catctcgcga attataccta cgtacagaag
     7621 caagcatccg ttacgacaaa ggttctgacg cttggaaagt agaaaaagca cttgcacatg
     7681 gcggagcgtt aatcgctgaa ctaagtggcg gaacactagt aggcggtgtc gtagaagtag
     7741 ataaccgtga aaaagctgta aataaaatcg aaacaagcct aacacgcatt aaccgcattt
     7801 taggaacagc aattacgctt gcggaaatcg aaacaatttt tgatcgttta ggttttgtat
     7861 tagaagtgaa aaatgatgct ctaatcattg aagtgccgac aagacgttgg gacatcacta
     7921 ttgaagcaga tattttagaa gaagtagctc gtatttacgg ttacgatgaa attccggtaa
     7981 cacttcctgc gacaagcaca acaggcggct tatcagacag ccaaaaagct cgtcgtgtca
     8041 tgcgcgctta tttagaagga gcaggactta accaagcatt aacttactct ttaacatcta
     8101 aaaaagatgc aactcgtcta gcgctttctg atgaaaaaac agttgcatta tcgatgccaa
     8161 tgagtgaaga acatagccat ttaagaacaa gtatcgttcc acaattaatt cgtagcgcaa
     8221 gttataacat cgctcgtaaa aatatggacg tggcacttta cgaaatgggt accgtgttct
     8281 acgcaacaga aggggacaat ttaccaattg aacaagagca tttggcaggt ctaattactg
     8341 ggaactggca tacggttgat tggcaaaaaa caccaaaacc agtagacttc ttcgttttaa
     8401 aaggaattgt cgaaggttta gtgaacaaat taggtatcaa atccgaactt cactggaaac
     8461 aaacagaaaa agaagaactg catccgggaa gaaccgccag ccttatttta gaaggacaag
     8521 aaattggtta tcttggagca cttcacccag cggtagaagc taactatgat ttaaaagaaa
     8581 catatgtctt tgaaatcaat gtagctgcat tactagatgc aaccaaagaa aaagttgtgt
     8641 accatccaat cccacgttac ccagaaatga ctcgcgactt agcattgctt gtggataaaa
     8701 ataccgacca tgcaacaatt tctcaagtaa tccaagagca cggcggaaag ttacttgtcg
     8761 atatcgagct atttgatatt ttcgaagggg agagtcttgg cgaaaataaa aaatcgctcg
     8821 catacacatt gactttccta gatagcgaaa gaacactagt cgaagaagat gtacaaaaag
     8881 caaccaataa agtaatagaa gcattacaag aaaaactaca tgcgattatt cgttaaatga
     8941 agaagaacta ggctagctgg aaaacatttt caactagttt ggttcttttt ttgtttttta
     9001 taaaatagtg gaagtctttc cttttttagt acttcactta cttaaataac acatgttata
     9061 atgatggcac atgccagaga aaaaaggacg agaaaaatga cctatgtaga aatgaaagat
     9121 gtatctaaat actatcaaat gggcgagaac gttgtcacgg caaatgataa aatcactttc
     9181 gggataaaaa agggtgaatt tgttgtaata gtcggacctt ctggagccgg aaaatccact
     9241 gtacttaata tacttggtgg aatggatagt gcaagtgaag gcaaaattat ggtagatggg
     9301 caggatattg ctcaatataa tgcaaaacaa ttaaccaaat atcggcgaac agatgtcggc
     9361 tttgtatttc aattttacaa tttggtaccc aatttgactg ctaaagagaa cgtagaatta
     9421 gctgcccaaa ttgcgccaaa tgcattagac gcagaaactg ttttaactca agttggatta
     9481 agtcacagat tagacaattt tccagcacaa ctatctggcg gggaacaaca gcgtgtcgcc
     9541 atagcacgtg cgcttgctaa agcaccgaaa ctgcttttat gcgatgagcc aaccggggca
     9601 cttgattacg atactggaaa atcagtctta aaattattac aagaaacttg ccgtaacacg
     9661 ggaacaaccg ttattgttat tacccataac acagcgatta cgccaattgc agatcgaatt
     9721 attgaaatta ataatgcaaa agttcgcagc atcaaagaaa atccagaacc aatgtcgatt
     9781 gatgatttag aatggtagga aggagcaacc agtgaaacgt tcagctttat ggaaagatat
     9841 ctaccgcgaa atatggcgtt ctaagagccg ctttatttcc atttttatgc tgattatgtt
     9901 gggtgttgct tttttctccg gacttaaagc aactggaccc gatatgcttc taacagccga
     9961 caattatttt aataagtatg aattagctaa ttttaacgtg caatctactt atggactaga
    10021 tgagacggac aaggaagcac ttgaagatat atctggtgtc gcacaagtgg aactcggata
    10081 tacagcagat actttaatga aagataaaaa tatcgtaacg aaactatttt ccaattctga
    10141 aagcgataat ttaaatcaat acaagatagc tagtggccgt ttaccagaaa aatcagggga
    10201 aattgcactg gatgacaatg accttgttca taaaaatgtc aaaatcggcg acgaagtaac
    10261 ttttgttaaa agtgatggaa ataagttaac taacacgcta aaaaaatcaa cttataaagt
    10321 agttggcttc gttagctcac cagcttacat ccagaaatct gaacgtggct cgagcacggt
    10381 tggaaaagga aaaacagatg cctttggtgt gattccagaa caggattttg atttaccaga
    10441 atacactatt gctaatctta cttttaacaa tttagcagca aaacaagctt ttagtgacga
    10501 atatgtatcc accgaagaaa aagataagaa aagcgtcgaa aaagctttag cagaccaacc
    10561 agaaaaaaga ttaaataaaa tcaagacgaa ggaacaaaag aaattagacg atgcaacagc
    10621 agaaattaac aaaggaaaag cagaactaca ggaaaatgaa gctaaacttg caaatgccaa
    10681 agcacaatta gaagaaggat tttctgaata taatgctgcc aaagcaagct atgacgccaa
    10741 aatcaagcat ggcgaagcag agattgcaaa cggtgaagca gaactaagaa gcgcaaaaaa
    10801 acaacttgat accgcaaaaa cacagattga ccaaggcgaa acagctcttt cacaagctga
    10861 gatggaatta gaagaaggta gagcggcttg ggaagatgcc aataatcttc ttaatacagc
    10921 aaatggttat ttgcgaagtg ctaagtcgac attagaaaat gctttaaaac aaccagattt
    10981 aactgatttt gagctagacc ggaacagctt aacaaattca tttcaaatgc ttgcatcaga
    11041 acttgattta tcaagtgcag agcgcgctga atatgaaaat gcgatgaatc agttactaga
    11101 tgattatgaa aatggcaata ttagtgatgc ggaaattagg gaagccttaa acgcggcact
    11161 tgcgcaagtt ggtaacgctg aaaatgaata ccaatccgcc agagccactt tagacgctga
    11221 aaaacaaaaa atagaacaag gcgaacaaac tttagctgca aaaaaacaag aacttcaaca
    11281 agcaaaaact gcctaccaag aaggtcttgc taaatatcaa gcaggtttag aaaaaatttc
    11341 gcaagcaaaa caacaactcg ctgatggaaa agaaacaggt tccacagaac tacaaagcgc
    11401 acttgctaaa ttaaacgtag gtcaagcgga atacgaaaaa aatctcgctt tgtttgaaaa
    11461 agagaaagca aaagcagaag gcaagctagc tagcgccgaa aaagaggtta aaatcggtca
    11521 agaaaaacta gatgcgctca aacttccaaa atattatgtc cttgatcgaa acgacaatcc
    11581 aggctacagc gaatataaag aaaatgcaga tcgtttaacc tcgttatcaa ccgcattccc
    11641 aattttcttc ttcctaatcg ctgcgctcgt ttgtttgacg acgatgacgc ggatggtaga
    11701 ggaacaaaga acacaaattg gaacgttgaa agcatttggt tattctaatg gtagcattat
    11761 tttgaaatac ctcgtatatg gttctaccgc gagtataatc gggagcgttc ttggaatatt
    11821 aattggattc cagtttttcc cgaatatcat ttttaacgcc tataaatcga tgtatgaaat
    11881 gccaccagtg gatattggct tttactggag ctacagtttg ctatccttat ttgttgcgtt
    11941 attctgtaca acatttactg cttatgtagc ttgtcgtgcc gaacttcgcg ccaatgcagc
    12001 aacattaatg cgtcccaaag caccaaaaat tggcaaacgg attttcttag aacgaattag
    12061 ttttatttgg aaacgaatga acttcacaag caaagtgact gcgagaaatt tattccgcta
    12121 caaacaaaga atgctcatga cggttctagg agttgctgga tgtaccgcat taattcttac
    12181 tggttttgga ttacggaatt caattagtga catcgccaaa atgcaatatg gccaaattat
    12241 gaaatatgat gcagctattt atcaagacat gagcgcacca ccagctgcca aagaaacctt
    12301 tgatgaaata atgaatgact ccaatatcaa aagcaagtta gctatgtctc aaacaaatat
    12361 tgagaccgta aaatcaggac aatcagctca aactacatcc attattgtcc ctaaaaattt
    12421 gaatgaatta ccagattaca ttgtgcttcg cgaccgtgcc agtcatacaa ccgaaaaact
    12481 caccgatgat ggtgcgatta ttacggaaaa actagctaaa ttatttgacg taaaaccagg
    12541 cgatacaatt accgtcaaaa acgctgaaaa tgacaaattc caaataaaag tcagtgccat
    12601 tactgaaaac tatgcaatgc actacattta tatgacaaaa tcatattatc aacaagtatt
    12661 taaagaaaaa cctacctaca atttagactt attaatgtta aaagatacct ctgaaaaagt
    12721 agagagcaat tttgcggaaa aattaacaga tagtaaagcc attttaaacg ttactttttc
    12781 caataatgtt agttcattgt taaatgaaac tttggatagt ttgaatattg ttatcgtggt
    12841 actcattacg tctgcggcat tacttgcgtt tgtcgtgctt tacaacctga caaatattaa
    12901 tgtttcagaa cggatacgag aactttctac tatcaaagta ctcgggtttt atccaaaaga
    12961 agtgactatg tatgtctacc gggaaaatat tattttaacc ttaatgggca ttgcggctgg
    13021 atttgtcctt ggattcttct tgcaccggtt tatcatcacc acagcagagg tagatcaaat
    13081 gatgttcagt ccggcaatta gttggacaag ctacctattt tccggcatac tcaccctcgt
    13141 ttttgcaact gttgtaatgg ttgtcatgca cattaaacta aaacgaatcg acatgattga
    13201 agcactgaaa tcagttgagt gatgatgaaa agaacttgtt tttatcggca agttcttttc
    13261 atttgactta aaaataaata aagcttaaac tgaaaaatag ttaagggggt gaactttatt
    13321 tggaaagaca aaaagtaaaa caactgataa aaagttacca acaaacatac atatttgcga
    13381 tgaatcaaat acatcaagct atttcagaaa tttcagcaag tactgtagac ctttccattg
    13441 agcagttttt tgttttgcgt gagattgcta cctatgatgg tattagcgca acagaactag
    13501 cagccacttt agcagtaaat aagagcgcta ttacacctaa actgaaaaaa ttagaagaaa
    13561 aaggctacat tagacgagaa cgaaaccaac aagataaacg cgccgtagtt ttaactatct
    13621 cagaaaaagg gaataacgtt tacgaagaat gcgaaaaaca attagagtta ctcgtgaatg
    13681 aatggctcga aatactaggg gaaaaggaca gcgaacaatt ttttgaatta tttcaaaaga
    13741 ttaccaagtc ggttgttgag cctagacaat aaaaggagag atttggcatg aaatggatta
    13801 tgaaactccg ctgggccatt ttagcatttt ggcttgcagc agcagtcgta ctaatgatta
    13861 ttgcaccacc catggcagat cttgtacgcg aaaaaggcga attaaagctg cctgatggct
    13921 atccgtcatc actagcaacg gaaatgcaaa agaaacataa tccagatgac aagggttcag
    13981 cttacatcgc tgtttatact gccgaccata agttaactgg aacagaatta aacgatattc
    14041 aggattcact caactctatc gaaaaagata aagacgaact tcatgtaaca aacgtgttat
    14101 ctagttttaa ccaaccagaa cttaaagata agttcttatc aaaagatggt aaaacaatgg
    14161 tagcaagttt aaccgtagat gatacggatg cctcggttaa aagcatacgt aacgcattag
    14221 ataagaaaat ggatgtaaat ggtgttgata cgtatttaac aggtaataaa ctaattcaag
    14281 aagatgtagt tcaaggatct gaagacggtt tacataaaac agaaggcatc accgttgtct
    14341 ttattttagt tgtattattc cttgtattcc gctcagcagt ggcaccgttt attccacttg
    14401 taacagtggg aattagttac ctcgttgcgc aaagcacggt agcattctta attgatatct
    14461 ttaatttccc agtctctaca tacacgcaaa tctttatggt ttgtattatg ttcggaattg
    14521 ggacagacta ttgtattctc ttaatgagtc gatttaaaga agaaatgggt gccggtctca
    14581 atccacgaga agctgttcat gcaacgtatc gtacagcagg aaaaacagtc atttatagtg
    14641 gtgtagctgt tctcgtagca tttacttcgc tatattttgt acaatttgat ttatatcgtt
    14701 ccgcagtagc agtcggcgtt gggattgtcg ttttacttgc cgcgttgtac acgctcgtac
    14761 cattctttat gagcacactc ggaacccatt tattctggcc gttaaataaa aatattagcc
    14821 ataaagaaaa taaaatttgg ggcgctgctg gtaaattcac ttttgcaaga ccgtggattg
    14881 ctttattaat cgttgcagct atcacgttgc cgccaatctt attgcataca ggaacagaat
    14941 catttaactc attagacgta attagtgaca aatatccttc caaaaaaggt tttgaaatcg
    15001 tatcggacag tttcggagca ggccaagtag cgccaacaca aatttttatc gaaaatgacg
    15061 ataatatgcg aactacagat tacatcgcgc aaattgaaaa aatttccgat gatttatctc
    15121 atttaaaagg catcgatatg gttatgagtg cctcacgtcc agccggaaaa cgggtagatg
    15181 acatttacat taaaaaccaa gccggacaag taaatgacgg tgttggtcaa gcaactgatg
    15241 gcgtagggga agtgaaaaaa ggactagatt cagcaagttc agaactcaaa aaatccgagc
    15301 ccgccttgga taaagctgtt gcaggagtga gcgatttaca aaaaggcact gtcgcaacac
    15361 aagaaggaat taaccaacta caaacagcac tcgcacaaat ccaaacaggc attgaaagcg
    15421 gagcaactgg tgctggtgat ttaaaacaag gcgtagcaga agccaaatca caactagcta
    15481 cgttacaaaa tggagaagcg caaatccaag caggatacgt agaaattcag aaaaacctac
    15541 aaaacgtagc tgaccaacta aaaggctttg aagaccctag ctctcaagca attgatactt
    15601 ccaaacttga agagcaattc aaaaaaattg gtgcttcttt ccaagcgttc gcagcagcgc
    15661 atccagaagt gagaaatgac cctcgtttcc aaaaactagc cgcagatatt caaggcttag
    15721 aaacagctgg taacgaactg aaaacctctg ctggacaaca aatggcagca cttcaagcaa
    15781 aaatgaaaga actaaatcaa ggtattcaac aactcgcaac agcgatgaat caattaaacg
    15841 agcagtccaa acaaatctct gatggactta gcgcttttag tacaggactt ggtcaaatcg
    15901 aaacaggact tgatcaatta gaaaaaggtc tcaatcaagc cgcagatggt caaggacaag
    15961 ttgtttccaa aatgccggaa atctctaatg cactaacgca aatcgctgct ggacaaggtg
    16021 ccctaaaaga tggctttgca ggcattagcg gtcaaatggg tcaattaaca gatggcttaa
    16081 cttctggcgc agacggccta ggtaaagtag aaagtgggct aaacacagcg aatggactta
    16141 tcgatgattg gtcaaaagtt ccttacgcaa gttccggaat ttatgtaccg gatgccctac
    16201 taaaaaatgc tgatttccaa aaagtattag atcaatacat ctcttctgat ggaaaactgg
    16261 caacgattaa tgtgattttg acgaaaaatc catattccaa tgaagcgatg gattcaattg
    16321 atgacattaa tgaacaactc tcagctagca tgaaaggaac aaaactggaa aatgcgaaaa
    16381 ttggtatagg tggaatgacg agtgccaatt acgatacgag agatatgtca acagctgact
    16441 atcatttggt tcttgtaatc gttctagcga gtgttttcgt gacacttgtt atcgtcttgc
    16501 gttctctagt aatgccaatt tatctgattg catcactcgt attaacgtac tttgctgcac
    16561 ttgggttcgc agaaattatc ttcatgcgaa ttcttggata cagtggtcta acgtgggcaa
    16621 caccgttctt cggatttgta gtactcgtcg cgctcggtat cgattattcg atcttcttga
    16681 tgtcaagatt taacgaatac aacggacttt ctgtacgcga tagaatgata aaagccatga
    16741 aaaatatggg tggcgttatc ttctcagcgg tcattatcct cggtggaaca ttcgccgcaa
    16801 tgatgccagc tggcgtgctt tccttactcg aaattgcgac ggtcgtttta atcggcttag
    16861 tactctatgc cgtcgttatt ttaccactct tcgttccagt aatggttaaa ctattcggac
    16921 gtggcaactg gtggccattt attacaagaa aaggcgacca tcaagaaaac gtaccaccga
    16981 aaaaataaca taataaaccg cattccttta aaaaagggga tgcggttttt agtttgcttc
    17041 caaagactat tttgctaaga tatagttaga tgaatgaagg aggaaaaaat catgataaaa
    17101 ctcggaaatg actgggatga gttactaaaa gatgagttta accaaccgta ttatttaacc
    17161 cttcgccagt tcctaaaaaa agaataccaa acgaaaaaag tatttccgga tatgtacgac
    17221 attttcaatg cgttaaaata taccgcttgt aaggatgtca aagtggtaat actcggtcaa
    17281 gacccatatc atggaccagg tcaagcacac gggctctcat tttccgttca acaaggagtg
    17341 cagattccac catcactgca gaatatttat ttggaattac ataacgactt gaattgtgag
    17401 attccaaaca atggttattt gatacggtgg gcagatcaag gagtgctact attaaatacg
    17461 gttctaactg ttcgcgccgg tcaagccaac tcacaccgag gacaaggctg ggaaatacta
    17521 acaaaccgca ttattgaaat cattaaccaa aaagaagagc ccgtagtctt tttactatgg
    17581 ggaaacaatg cgaaagaaaa gttgcaattg ttaacaaatc cgaaacatac tgcgtttaca
    17641 tccgtacatc ccagtccact ctcagcatcg cgcggtttta tgggatgcaa acatttttct
    17701 aagacgaatc aatttttaga acaaaatggt gtaaaaccaa ttgattggca aattccttct
    17761 atataaataa aaacatctcg ccatttattg acgagatgtt tttttacttt ttaaccattt
    17821 ttaatgcttt ctctgtatta gcgaaatgct gttttgtata tttcgctaat gtttccagac
    17881 caaatcgttc gatgatttcc gctgcaacag catccacatg aggtcctgcg ccttttggaa
    17941 gtgggatgcc aacttctttt gacatcgcat caaaagcttg cacaaattta taacgagcaa
    18001 taatcgaagc agcagcgacg gaaagatgta atccttctgc ttttgtcgca aaaaacacat
    18061 cttctcgaat aatgcttggt tcttttgcta aatagcgata atacgtattt ttttcagcaa
    18121 attgatcaat taaaatcgct tctggtttga caggtgcgag ctttttcaag acgttttcaa
    18181 tcgcgcggtt atgtagtaaa gctttcattt gtccttggtt catgcctctt ttttggagtt
    18241 cgttgtattt aggattaggg caaagcagca cactgtgcgg aacaagtggc atgattttct
    18301 cagcaatacg acaaatttct ggatctttca ttgctttcga gtcctttaca cctagctctt
    18361 ttaacagggg catcatttcg gcgtccacat atgcggcaca aaccgtaatc ggtccaaaaa
    18421 aatcaccggt gccaacttca tctgaaccaa tgacattttt tgatgcgaag tttgccggaa
    18481 gaattccttt agagacggaa ggtgcttttg tttttgattc tggaagagtc gccacccatt
    18541 tttttgcttc tacttctccg tttactcctt ggaacatcac tttgcgcgac ttgtagccag
    18601 tgatggaaac accggttttt tttgcagcga aaacagctcc tggtggtagc tttggattag
    18661 aaaatgggag atatgtttgt ttcatttttt caagtgttgg ttgatcgact aagataactg
    18721 tatttgcgat aaggcatcat cctttcaaag ttctattgta acatactacg acgaaagact
    18781 gaatatcggc taaacgggtg gttgactctt ttctttcctg ctttttcgtg ataagattat
    18841 gacaagtagc ggcctaaatg aatttgggcg aggaggaata tacgtggcaa atgagagaaa
    18901 taaagtagtg acaacaattt acggtagaga atatacgatt gttggcgtag aaacaacaga
    18961 ccacttacgt aaagtagctc gcgaggtcga tgaaaaaatg cacgaaatcg gctcccaaaa
    19021 tcatgcacta gatagtggta ggcttgctgt actgacagct gtgaatgcga cacacgatta
    19081 cttaaaacta gaacaaaaat atctagagtt agagcaagaa ctggctcgaa ttaaaggaag
    19141 agattaatga ttttaaatgc gattatttta attttacttg tttgcggctt tttcgcagga
    19201 tttagaacag gccttatcaa acaacttatc ttattattag gttatatttt ggcgtttttt
    19261 atctcgtata cgtattacga agatttagcg ccacatttaa cgtttatacc ttatccaggt
    19321 agtgatactg cagatggatt atccattatt ttacaagaat tacgaacaga aacggcctat
    19381 tataacgtac ttggatttgc gattattttt attgtcgcaa tcattgtcgt tcatatgctt
    19441 gcatcacttg ttggcggctt gactaagatt ccagtcctgc gccaaattaa tggattgtta
    19501 gcagctgttt ttggtgttgt taagtcctac ttaattattt ttgttgtctt gttcatcatg
    19561 gcaatttacc cggcgaattg gtctgaaaac cttattgata gctcaacggt tgcccagtgg
    19621 atgcttgaaa acacgccaat tttatccgaa caattttatg actggatgac agacattctg
    19681 ccaaaataaa agaaacattc gataccagat gtatactctt agccaatttt ggataggatt
    19741 tctctggtat tttttaatga ttttacaggg aggaataaag atggctacta ataaaaaaga
    19801 aattattcgt ttactcgaag aaattgccac ttatatggaa ttaaaaggag aaaatagctt
    19861 taaaatatct gctttccgca aagctgcaca agcaattgaa ttagatagta gaagtttatc
    19921 tgaaattgat gattttacga agattagtgg catcggaaaa acaacgggcg aaattatcca
    19981 acgttattta gatagcggag aatgtccaga acttgaggcg cttaaaaaag aagtaccagc
    20041 tggtctcgtt ccacttttag atgtgccagg gctaggaggc aagaaattat cgcgtcttta
    20101 tcatgagctt ggtgtggtgg ataaagatac attactccaa gaagcagaaa atggtcatat
    20161 cgaagcattg aaaggttttg gtaaaaagtc tgctgaaaaa atggccgaag cagtgcgcga
    20221 aatgggtgag cgccctgata gatatccgct aaatgatgtt ttaccaatca ttcaaaaagt
    20281 agaagcttat cttgcggata ttgctccaat cgaaactttt gctcaagctg gaagtctacg
    20341 cagattgcgg gaaacggtga aagatttaga ttatgttatt gcgacggaaa aaccagaaga
    20401 agttcaaaaa gcattactgg catttccatt aattacggac gttattggag ctggtgaaac
    20461 aaaagtatca gctgtattag aagataatat taccatttcc gtggatttcc gtttagtaga
    20521 aaagaaagct tttgcaacga cactacatca ttttacgggt tctaaagatc acaacatcaa
    20581 aatgcgccaa ttagctaaac aatccaatga aaaaataagt gagtatggag tcgagcaaga
    20641 agatggaagt gttcgtcact ttgaatcgga aaaagcattt ttcgagcatt ttaagattcc
    20701 gtttctccca cctgaagttc gccgagatgg tacagaaatt gagcgcgtga cgaaagatac
    20761 aaaattcctt gagttaagcg atattcgcgg ggacttgcac atgcatacaa cttggtcgga
    20821 cggagcctac gcgattccag aaatgattga agcatgtatc gcaaaaggat atgaatacat
    20881 ggttattaca gatcacgggc aatttttgcg agtagctaat ggtctggacg aaaaaagatt
    20941 attggagcag caagcagaaa ttaaaaaaat agcagctaat tatccggaaa ttgatgttta
    21001 ttccggcgtt gaaatggata ttctggcaga tgggtcgctt gattttgatg atgagacttt
    21061 gaagcagttg gattttgtta tcgcatccat ccattccagt ttccaacaat cagaagaaga
    21121 aattatgaag cgattaaaaa cggcctgtga aaatccatat gtgcgtctga ttgcgcatcc
    21181 gacaggtaga attgtcgtga aaagaaagcc atatcatgtt aatatgaaag aactaatcca
    21241 gttagcgaaa aatacaggaa ctgccctaga attaaatgcc aatccgcaac gtcttgattt
    21301 aaaccgtgag catttagaaa tggcacacgc tgccggggta ccgattgcga ttaacacaga
    21361 tgcgcacgac acgaagcacc ttgatttcat gtctattggc gttcgagctg ctacaaaagc
    21421 ctggctcgac aaatcggcca ttctaaatac gaaaacagca gctgaattta aacatttttt
    21481 acagaataaa taacttttaa aaagaaggat gactaatgga aaaaaaagta gaagccattt
    21541 tagaatttga taaaataaaa aaacaactca ccgaatttgc ttcttcgtca ctgggggagc
    21601 aagcgatttt ggaactcgct ccagcaactg attttcaagt agttcaaaaa acgcaacttg
    21661 aaacagaaga aggagccaag attattcgtt tacggggaag tgcgccaatt actggtctaa
    21721 cagatgtttt tgcacatttg aaacgtttag agattggtgg cgatttaaac gggctagaaa
    21781 tttaccaaat aggtagtaac ttgcgcgtta gccgtcaaat gaagaatttt atgaacgatt
    21841 tactggaaat cggtgtcgaa ttgcctttac tcggcgccct ttcggatgaa cttttagtac
    21901 taaaagaagt agaagaggat attgcgattt cagtagatga aagcgggaaa gtgttagata
    21961 ctgcgagtga agcgcttagt acgattcgcc gaacactccg ccgtaccgaa gaccgcgtac
    22021 gtgaaaaact agaatcttat ttgcgcgatc gtaatgcctc taaaatgtta agcgatgcgg
    22081 ttattacgat tcgaaatgat cgttatgtta tcccagttaa acaagaatac aaaggtcatt
    22141 atggtggtat cgttcatgac cagtctgctt ccggtcaaac gcttttcatc gagccacaaa
    22201 gtgtagtgga tttaaacaac gaacgaaaag cacttcaagc aaaggaaaaa caagaaatag
    22261 aacgcattct tgctgaaatt tctgcttcac tagctgcttg gattaatgaa attcatcata
    22321 atactttcat cctcgggcgc tttgatttta ttttcgccaa agcacgtttc ggaaaagcga
    22381 tgaaagctgt aacaccgcat ttgagtgatg ctggtgtcgt ccatttaatc gccgcacgcc
    22441 acccgctttt agacgctgcg aaagttgtag cgaatgatat ttatttaggc gaagatttca
    22501 ctaccatcgt tatcaccggt ccaaatacag gtggtaaaac aattaccctg aaaacattgg
    22561 gattactaac actcatggca caatctggac ttcaaattcc cgcgcaagaa gattctacta
    22621 tcgctgtttt tgagcatgta tttgccgata ttggtgacga acaatccatc gaacaaagtt
    22681 taagtacgtt ctcgtctcac atgacgaata ttgtttccat tttggaaaat gttaatcaga
    22741 aatcgcttat tttgtacgat gaactcggag cgggaacaga cccacaagaa ggtgcggctt
    22801 tagcaatcgc cattcttgat gcaagccatg caaaaggtgc aagtgttgtt gcgacgaccc
    22861 attatccgga actaaaagca tatggatata atcgcgttca cgcaaccaat gcatctgttg
    22921 agttcaatgt cgaaacactt agcccaactt ataaattatt aatcggtgta cccggtcgaa
    22981 gtaatgcttt tgatatttca cgccgcttag gattaagcga aaatattatc actgaagcaa
    23041 gaagccttgt cgataccgaa agtgccgatt taaatgatat gatttccagc ctagaagaga
    23101 aacggaactt agcggaaacc gagtatgagg aagcacgtga attagctcgc ggggctgata
    23161 accttttaaa agatttacaa aaagaaatca gcaactacta tcaacaaaaa gataaattaa
    23221 tcgaacaagc gagtgaaaaa gcagcaacta ttgtggaaaa agccgaagcc gaggccgaag
    23281 aaatcatcca cgaattgcgc accatgcaat taaacggagc agcaggaatc aaagaacatg
    23341 aacttatcga tgccaaaaca agacttggga atgctaaacc aaaaacaata aacaaaacca
    23401 tcccacaagc gccaaaacaa aaaccacatg tattccaaga aggcgacaat gttcgtgtcc
    23461 tctcccttgg ccaaaaaggc acacttttaa ataaaattag cgataaagaa tggaacgtcc
    23521 aaatcggcat catcaaaatg aaaatcaaaa ctactgactt agaatacatt caaccagaaa
    23581 aaccaaaaaa acaacgtatc attacatccg ttcatagtag tggttctcca gctaaaagcg
    23641 aactcgattt acgcggcgaa cgatatgaag acgcgctaca aaaagtcgac aaatatctag
    23701 atgaagcact actcgcagga tatcctcaag ttgccattat acacggtaaa ggaactggtg
    23761 cccttagaac cggggtcaca gaatatctga aaaaccaccg catggtcaaa tcaatccgtt
    23821 ttggcgcagc agcagaaggc ggaaatggcg taacgattgt tgagttcaag taaacaactg
    23881 agcaaaaaca tggctccaaa taggtctagg tgctatactg tgtgtacgaa agtcataagg
    23941 agtgaattaa atcatggtaa aagaaattac agatgcaaca tttgaacaag aaactagcga
    24001 aggcttagta ttaacagatt tctgggcaac atggtgtggt ccttgccgca tggtggctcc
    24061 agttttagaa gaaatacaag aagaacgcgg cgaagcactt aaaatcgtca aaatggacgt
    24121 agatgaaaac ccagaaacac caggaagctt tggtgtgatg agtattccaa cacttcttat
    24181 caaaaaagac ggcgaagtag tagaaacaat tatcggctac cgtccaaaag aagaactgga
    24241 tgaagtcatc aacaaatacg tttaaaatta tgctaaaatg aaagaagctt agaacaaaca
    24301 ttctaagctt ctttttaaat gtgtaactgg agttgataaa atgtcttctg aacatatcca
    24361 aaataaacta gcgcttctgc cggaccaacc tggttgttat ttgatgaaag atagacaagg
    24421 aaccattatt tatgttggga aagcaaaaat tttaaaaaat cgtgttcgat cctatttttc
    24481 aggaacacac gatagtaaaa cgcaacgctt agttcaagaa attgtggact ttgaatatat
    24541 cgtaacatca tccaacgtag aagccttgct actagaaatc aatttgatca aaaaacatga
    24601 tcctcgtttt aatattcgcc taaaagatga taaaacttat ccgtttatta aaatcacgaa
    24661 cgaacgacat ccacgcctaa ttattacccg tcaagtaaaa aaagacaaag ggaaatattt
    24721 tggtccatat ccaaatgtgt atgctgctaa tgaagtaaaa cgtattttag atcgactgta
    24781 tccattacgt aaatgcagta cgctaccaaa taaagtgtgt ttgtactatc acctcggaca
    24841 atgccttgcc ccgtgtgtat ttgacgtgga agcaagtaag tataaagaaa tgcaagacga
    24901 gatagtcgca ttcctaaatg gcggctataa aactgtcaaa aatgatttaa tgaagaaaat
    24961 gcaagaagca gctgaaaata tggaattcga aaaagcgggt gaattccgcg accaaatcaa
    25021 cgcaatcgaa acaacaatgg aaaaacaaaa aatgacgatg aacgatttcg ttgaccgtga
    25081 tgtctttggt tatgccattg ataaaggctg gatgtgcgtc caagtattct tcattcgtca
    25141 agggaaacta attgagcgcg atgtctccca gtttccattt tataatgatg cagatgaaga
    25201 tttcctcaca tttattggtc aattttacca aaaagccaat catattccgc ctaaagaaat
    25261 ttatttacca gatgatgtcg atagcgaagc cgttcaagcg gtcgttcctg acacaaaaat
    25321 catcgtacca caacgcggaa ataagaaaga tctcgtaaaa cttgcataca aaaatgcgaa
    25381 aattgcctta aacgaaaaat ttatgctact tgaacgtaat gaagaacgca cagtcggagc
    25441 agttgaacgg cttggagaag caatgggaat cccaacaccg tcacgcgtcg aagctttcga
    25501 taactcgaat attcacggta cagacccagt ttccgcgatg gtcacattcc tcgatggcaa
    25561 accaagtaaa aatgattacc gtaaatacaa aatcaaaacc gtagaaggac ctgatgatta
    25621 cgcaacaatg cgcgaagtta ttcgacgtcg ttactggaga gtacttaaag aagaactacc
    25681 aatgccggat ttaatcttaa ttgatggtgg taaagggcaa attgatagtg ccaaagatgt
    25741 cctaacgaat gagctaggct tagatattcc agtagcagga cttgcaaaag acgacaaaca
    25801 ccgtactagc caactattat tcggtgaccc acttgaaata gtcccactcg aacgaaacag
    25861 ccaagaattc tacctattac aacgaatgca agatgaagtc caccgtttcg ctattacatt
    25921 ccaccgccaa ctacgcagca aaacaggctt ccaatccatt cttgacggca tcccaggagt
    25981 aggacccggt cgcaagaaaa aattacttaa acacttcggc tccatgaaaa aattaaaaga
    26041 agcatcggta gaagaaatta aagaagccgg tgtccctttg aatgttgcag aagaagtgca
    26101 taaacacatc acagcattca atgaaaaagc aaaaaatacc gagcaaaaat gattttaaac
    26161 acgattttaa acgccaataa ctttgatgtt attggcgttt tattgcataa aaattgttac
    26221 taacatgtca gattaaatag cttttacata taataaactt cccttcaaca cataaatgcg
    26281 ctaaaatata aacattgata aaaaagaact aacaaggcag gagggaacga gattgggact
    26341 agtcgtatta aaatttggcg gaacatcagt gagcacggtg gataaaatcg ggaaaacagc
    26401 agatcaagcc atttatgaaa aaaaacaagg aaataaagtc atcgtcgtcg tttccgcaat
    26461 ggggaaatca accgacaaat tagtcgcgat ggcagaagaa attagcgagg caccagataa
    26521 acgcgaaatg gatatgcttc tttctactgg tgagcaaatc acaattgctt tacttgcgat
    26581 gacattaaaa gaaaaagggc acgatgctat atcctataca ggatggcaag cgggaattga
    26641 aacagaagcc gtacatagta atgctagaat tgccgatatt gatagcgctc gtattgaatc
    26701 tgcgcttgat gcgggacaaa ttgttgttgt agcaggtttt caaggtttca cgacagatgg
    26761 tgaaattact acattaggac gaggtggatc agacacaacc gccgtcgcca tcgcttctgc
    26821 tctaaatgcc gtaaaatgcg cgatttgtac ggatgtagtc ggtgtattta cgacagatcc
    26881 acgctacgtg aaaaaagccc aaaagttaga acaaatcacc tatgatgaaa tgttagaatt
    26941 agctaatctc ggtgccggtg ttttacatcc acgctccgtt gaatatgcca aaaatttccg
    27001 aattccgctt gaagtcagag cgagccacga acaagtacca ggaacaatga ttgaggagga
    27061 tttaacaatg gaaaatacca aagtagtccg tggaattgct tttgaagacc aaatcacccg
    27121 tgtaactagc cactggaaac aaaaagaagc aatgcgagtt tctaaagtct ttacaaaatt
    27181 agcagaaaat aatattgatg tagatattat tatccaagga attactggac taggtcacgg
    27241 taatctatcc ttcactatca aaacaagcgc actcttagcc acactagcag ttttagaaga
    27301 aagcaaagaa ttacttcaaa ttgaaaaact agaatccgaa caagatttag cgaaggtgtc
    27361 cattgttggc tctggaatgg taagtaatcc aggtgtagct gcacagatgt ttgaagcttt
    27421 aacagaaaat aatattccaa taaaaatgat tagcacatca gaaatcaaag tttccactgt
    27481 cgtaccagcg cgcaaaatgg tcgaagcagc ccaagtttta catgaccaat ttgaactcga
    27541 taaataaaaa taagcttgta gcatcaaaga ggatttctct ttgttactgc aagcttattg
    27601 ttttaatagc gttcttcgtt atcaatcgtt tctttacgat cccatttaac gataatggtt
    27661 acttgttttt tacgtttatc aatttcatcg tagctttctg tatacagctt cttctgtgat
    27721 tgcaattgtt ctgcaataaa gccagcttct agtttaaatg taggctcttc ttgtgtacgg
    27781 aaacgagcag caactgtttc accttctaaa agtaaacgca tttcatcttt cttttctttc
    27841 aaaatgctaa aattacccca agaggcttct tcaaaaaatt ctgctacttc ttctagagac
    27901 gctagtggga atttacgtgc caagtctttc cccgcccagt acataatgtg aggtgcttca
    27961 tctccaagta gttcaggaat taaataatcg cgtagtaaat ctaaaccaaa acttggaacg
    28021 agagcttttt cctcgttttt attctgttca ttttctgtca tttcggatac cccactttca
    28081 tacaccatta taaccaaaat caccctaaaa tggaaagcac aataaataaa tttccacaaa
    28141 aaagcttttt tctcaaaaaa gacttgcgaa aaagctcaaa aaataagaaa atggaaggta
    28201 tagataaaaa aattggaaat taataaagaa attgaggcga gactgtgaaa caagctattg
    28261 gctttattga ttcgggagta ggcggtttga cagtagtgcg agaagtgcta aaacagctac
    28321 cccatgaaca agtatattat ttaggtgata ccgcacgttg cccttatgga ccacgcgata
    28381 aagaagaagt agctaagttt acttgggaaa tgaccaattt tctagtagac cgtggcatca
    28441 aaatgctcgt tattgcatgt aataccgcaa cagcagcagc attatatgat attcgtgaaa
    28501 aattggatat tcctgtgatt ggtgtaatcc aaccaggttc aagagcagct ctcaaagcaa
    28561 caagaaacaa caaaattggc gtattaggaa cacttggtac agtcgaaagc atggcttacc
    28621 caacagcgct caaaggacta aaccgccgag tagaagtaga ttcactggca tgtccgaaat
    28681 ttgtatccgt tgtagaatct ggcgagtata aaagcgccat tgcaaaaaaa gtagtagccg
    28741 aatcactctt accactgaag agtaccaaga ttgatacggt gattttgggt tgtacgcatt
    28801 acccactttt aaaaccaatt attgagaatt ttatgggaga cggcgttgct gttattaact
    28861 ccggagaaga aactgctagt gaagttagcg cgttactgga ttaccataat ttattagatg
    28921 ctacagacga agaaattgag caccgttttt tcactacggg ctcgacacaa attttcaaag
    28981 atattgcaaa agactggtta aatatgccag atatgactgt agaacatatt aaattaggaa
    29041 aataagaggt gccaataatg agagttgatg gaagagaaag taatgcatta cgaaatattg
    29101 aagtaacacc agattattta atgcatccag aaggttctgt gctaattgca tcaggaaata
    29161 caaaagttat ctgttctgca agtgtagaaa caaaagtgcc accatttatg cgaggagaag
    29221 gccgcggctg gatttctgca gaatactcga tgttaccacg agcaacaaac acccgaaata
    29281 tccgtgaatc ttcaaaaggt aaagttactg gcagaacaat ggaaattcag cgtttaatcg
    29341 gacgtgcgct ccgtgctgtt gttgatttag atgcccttgg tgaaagaaca atttggctcg
    29401 attgcgacgt tatccaagca gatggaggta ctcgtacggc ttctatcacc ggcgcattta
    29461 tcgcgatggt catggcaatc gccaaactag acgaagctgt accatttgct aaatttcctg
    29521 tcaaagattt cctagcagca actagcgtag gtgttttaga agagggtgga acagtacttg
    29581 accttaacta cgtagaagac agcgcagcgc aagtagatat gaatattatc atgacaggta
    29641 gcggcgcctt tgtagaactc caaggaactg gcgaagaagc tacattctcg gaaacagaac
    29701 tggctgaact aattgcctta ggtaaaaaag gaattagcga attaatcgaa atccaaaaag
    29761 aaacactcgg agacaaagtc acagcgcgga ttaaaggaga ataaaaaatg agtaaaatta
    29821 ttatcgctac cgcaaacaaa ggaaaagcaa aagaattcga aaaaatcttt gcgaaattta
    29881 atatcgaagt agcaaccctt gctgattttc cagaaattgg tgaaatagaa gaaactggaa
    29941 caacctttgc cgaaaatgcc gctcttaaag cagaaacggt cgctagcgtg ttaaatcaaa
    30001 ccgtcattgc tgatgattct ggtttaatcg tagacgcgct tgacggagct cctggcgtct
    30061 attccgcacg ttatgcaggt atcgctcacg atgatgccaa aaataacgaa aaactactta
    30121 aaaacttaga aggtgttgaa ccggacaaaa gaacggctcg tttccactgt acacttgctg
    30181 tagccacacc ttctgagaaa acatcttttt ataccggtga agtagagggc gttatcgcag
    30241 aacaactatg cggcacaaat ggctttggct atgatccact atttttctta ccagaattcg
    30301 gtctaacaat ggcagaaatt ccagcggaga aaaagaatga aatcagccac cgtgctaatg
    30361 ccattaaaca actagaaaaa gatttagcag aagtagtaga aaaagtaacc aaaaagtgag
    30421 aaaataagta acagtatcac gggggaggaa acaaaatgaa attattagta gttagcgaca
    30481 gccactcaga acgtgactgc ttaatccatc ttaaagaaaa atacgaaaat acagtcgatg
    30541 cgatgatcca ttgtggggat tctgaattag aagctgacga tcctgcgatt cagggatttc
    30601 atactgttcg aggcaactgt gactttggcg gcggttttcc aaatgattgg gtgggagaag
    30661 tagacggcta ccgcattttc accacacacg gacatctcta taatatcaaa atgacactca
    30721 tgaatttacg atatcgcgca cgtgaactaa acgcagattt cgcctttttt ggtcattcgc
    30781 atgaattagg agtagacatg ctagacgaca ccatcatttt aaacccagga agcatttcct
    30841 taccaagagg acgcatccgt gtcaaaacat acgctcttat cgattcaaca ccagaaggca
    30901 ttcaagttcg attcatggac cgggacgaca acgaactaac ggacctaacc caaaccttcc
    30961 cattaacgaa gcataactag gtcaaaagac acccgaaaaa gaaaaaatgc aataacttaa
    31021 agaaaaccat tgacaaacaa gcgatttaaa cataaaatgg tatttggctg ttgaaaaaac
    31081 agtgccattt gtcctgatag ctcagctgga tagagcaacg gccttctaag ccgtcggtcg
    31141 ggggttcgaa tccctctcag gacgtaaata gctatattaa agaaatctct aaaacgttga
    31201 aaaaccttga tattaaaggt tggatggatg ttttagagat ttttttatat cgtataatac
    31261 ccgttttatt ccgttgtttt tgtggcattt gtggtaaaat ttgtggtatt ttcatctgtt
    31321 tttagtgtga aaaaagcatc tactttggac tgattatgtt gtcttaaatt agagcttaga
    31381 tgactatagt attttaatgt tgtattaatg tcatcatgac caagcctatc agctacataa
    31441 ataatatcca tacccgcttc tacacataag cctgtatgcg tatgtcgtag cttgtgtaat
    31501 gtcactggtt cagaattgat tgtactacat atcttcttca aagctttatt acaagacgcg
    31561 ttgtctactg gcttattgtg gtaagtgatg aataataaca tcaatggatt cttaatagca
    31621 tgttccttca tataatcagt atgccaattt aaatacgaat gtaaatattg agcggtagag
    31681 ttatcaatat agatcactcg tgattttttt gttttggtat caatgaatgt attagtgtac
    31741 ttgtaatccc aagctttatt cacagttatt gaacgtttag tgaaattaat atccttcttt
    31801 gttagtgcaa taatttcttc gaacctcatg cctgtctgga cagctagaaa gataactgct
    31861 cgtgatatag aatgaaattt tgcaagttct tctaatagta aatgaacttt gtctgtttcc
    31921 ataaattgtg ctttattttt cgctacgtcc tgtccgctta tatgagcccc tatagtgggg
    31981 tttttcttca tgtaacctaa atgaacagcc ttgttaaaaa tcgctctaat tttgcggtgt
    32041 ctggtgtcta cagtggatat tgcatagtct acagataaat gattaataaa ttgttgatat
    32101 tgaaccgcat caatcgaatt aagtttaatt ttttcatcga aataatcaac gaattgatt
//
LOCUS       DABQVC010000006        30031 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.006,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000006 DABQVC010000000
VERSION     DABQVC010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 30031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30031
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.006"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(12..764)
                     /locus_tag="IBJ56_000195"
     CDS             complement(12..764)
                     /locus_tag="IBJ56_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAM3416480.1"
                     /translation="MLNAERKQLIMESIEKLGVIKLQELVEGLATSESTIRRDLIELE
                     EQGLIQRVHGGAKLVKLHNQEPSMNEKSFKNIQSKKVIAAYCASLVEENDCIYLDAGS
                     TTLELITHLANRNITVVTNGLTHIEELVRQNIDAYLLGGKMKVHTKAIIGAVALDNIQ
                     NYHFDKAFIGTNAMHPEHGYTTPDMEEAFVKRAAKERADRVFVVADHTKFNEVNFSKM
                     FSIEEATIVTDYIPSAVKESFIQKTKIIEVEK"
     gene            982..2307
                     /gene="pepC"
                     /locus_tag="IBJ56_000196"
     CDS             982..2307
                     /gene="pepC"
                     /locus_tag="IBJ56_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase C"
                     /protein_id="HAM3416481.1"
                     /translation="MHTELTFEQLESFSRKWRENPDKLVFQASIIKNGIKAATENPAS
                     KVSIQPVFSHEVATDKVSNQQQSGRCWMFAALNTFRHKLNGTLGLKDFELSQNYTNFW
                     DKLEKANYFLENIIETASEDEDSRLVSWLLDTPQQDGGQWDMLVSIIEKYGVVPKSAM
                     PETFQSSKSADLNHLLNERLRTDAVILRNAIAEKKDTADLKEEMLAEVYQLLVMTLGE
                     PPKVFDFEYRNKDNEFKQELQITPKDFYERYVDMDLKDYIPLINAPTKDKPFNQAFTV
                     EYLGNIVNGTPIKYLNVEMDVLKKAAADQIKDGETVWFGCDVGQLSERNTGIMDTDIF
                     LLNQTFGFKTAMTKAERLDYKHSMLTHAMVLTGVNIANGEVNRWKVENSWGEKIGNNG
                     YFVASDAWMDEFTFQVVVHKKYLSKELIESFNQKPIVLKPWDPMGSLAL"
     gene            complement(2304..2747)
                     /locus_tag="IBJ56_000197"
     CDS             complement(2304..2747)
                     /locus_tag="IBJ56_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 domain-containing protein"
                     /protein_id="HAM3416482.1"
                     /translation="MIAVSACLAGIACRYDGKDKEITKIKQMVERGEAIPFCPEVTGG
                     LPTPRNPAEIIGGDGKDVWLGHAKVIDNKGTDVTEEYKNGARLTLIKMQELGITQIIM
                     KEKSPSCGSCAIYDGTFSGKIKDGTGVAAALFQMNGIKIISEFAF"
     gene            complement(2828..3739)
                     /locus_tag="IBJ56_000198"
     CDS             complement(2828..3739)
                     /locus_tag="IBJ56_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HAM3416483.1"
                     /translation="MKNYLSLSEEVKQAKAEGKAIVALESTIISHGMPYPQNVEMARD
                     VEQIIRDNGAVPATIALIDGKIKIGLSDEELELFAKSSNVAKVSRRDIGYLIATKQLG
                     ATTVAATMICAELAEIGIFVTGGIGGVHRGAETTMDVSADLEELAKTNVAVVCAGAKS
                     ILDLNLTMEYLETKGVPVIGYQTDVLPAFYTRSSDVELTLRADAPEVIAESLKAKWDL
                     QIKGGAVITNPIPEEFAMDEKVINDVIQTALKEAEENHIHGKDVTPFLLGKVKELTDG
                     KSLEANIELVKHNALIGTQIAVAYQNI"
     gene            complement(3736..4854)
                     /locus_tag="IBJ56_000199"
     CDS             complement(3736..4854)
                     /locus_tag="IBJ56_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAM3416484.1"
                     /translation="MENNKAKMNEKEEIIFNSIRKNPYISQQELADILDLSRPTVANL
                     ISGLIKKGRILGKAYILNEAKQIVCIGGANVDRKFYIKDKAQLATSNPVRSTQSAGGV
                     ARNVGENLGRLGKEVILLTACGTDSDWEAVKNASNTYMNLDYVTAFPSIATGSYTAVL
                     ENNGDLLVALADMDAYDHLTPDVLAKNEGLLSQASAIIADLNCPKETLEYLGSFAEIN
                     SIPLVLVPVSSPKMSHLPERLDHVTWLICNRDESETHLGMTIKNDEDWRLAAQKWLDL
                     GVKNVIVTNGSKGAVAANKGEGTIFEPAIVIENIVDVTGAGDAFCSAVIYAWLEGKAL
                     KEILRAGSVNAARTLESEYTVRQNLSTSQLQKDMEEFK"
     gene            complement(4987..5688)
                     /locus_tag="IBJ56_000200"
     CDS             complement(4987..5688)
                     /locus_tag="IBJ56_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HAM3416485.1"
                     /translation="MRLDKLLSHTGFGSRKEVKPLLKSGAVVVNGTIQKDSKTQVNPD
                     KDQVTVHGTPVVYQEFVYFMLHKPQNVVSATEDNVSETVIDLLAQEDTLTDPFPVGRL
                     DKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTLADVEAFAAGIELDDGYT
                     CKPARLEIITPNEINVTIQEGKFHQVKRMFAARGKKVSYLKRISMGNLQLDESLGLGE
                     YRPLTESELAILQNK"
     gene            complement(5762..7084)
                     /locus_tag="IBJ56_000201"
     CDS             complement(5762..7084)
                     /locus_tag="IBJ56_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HAM3416486.1"
                     /translation="MTRKETIQFGAIIHGVGGTTDGWRHPDINPAASTDLDFYKTRAK
                     IAEQGLFSFVFIADGLFISEKSIPHFLNRFEPITILSALAESTENIGLVGTFSTSFTE
                     PFTLARQLSSLDHISGGRAGWNLVTSPQEGAARNHSKKNLPTHSDRYTIAAEHLKVVR
                     GLWSSWEEDAFTYNKETGEFFNPEKLHRLNHQGEYFQVEGPLNIGRSKQGEPVVFQAG
                     ASSTGRDFAAQNTEAIFTHSDSLEEAIEFYQDVKARAEKAGRNADEVRIFPGISPIVA
                     DTLEEAEAKYTEFASLIPIENAVTYLARYFDDYDLSQFDLDAPFPDLGDIGKNAFQST
                     TDRIKKEAKERHLTLRQVATEAATPKTPFIGTKEQVADLIDVWFQNDAADGFIIASDI
                     PGTFETFVEQVIPLLQSRGLYRNEYPATTLRGNLGLTIPQNKQVVETI"
     gene            complement(7081..7347)
                     /locus_tag="IBJ56_000202"
     CDS             complement(7081..7347)
                     /locus_tag="IBJ56_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HAM3416487.1"
                     /translation="MANVVVWSKVGCHYCKDVKDYLTEQKIVFQDIDVTDHDYLREVL
                     QAKYGIRYVPVVEIGDIEKGTYQAVTEIGLEHLEKALFEKEEVK"
     gene            complement(7340..8335)
                     /locus_tag="IBJ56_000203"
     CDS             complement(7340..8335)
                     /locus_tag="IBJ56_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HAM3416488.1"
                     /translation="MTIRFSILDQSIINPGEKPSEALQNTVELAQLAEQLGYHRFWVA
                     EHHNSDEIAGAAPEVLLGYIAAKTSTIKLASGGIMLQHYSPYKVAEQFHVLENLAPGR
                     MSLGVGKAPGGFQPATDALQKDFVKPTRTFDAKLKELVDFVTHHSEVAIAAKPLPENK
                     PEIFLLGGSAASAKQAAKLGISFVFAYFINGEEAVLKEARELFEQYRINTKASFQLAP
                     IVVVAETKIAADRHIPERESIKVELADGRRVNVGSREQAESYVKDINQTYRFITQRIG
                     AITGTKQEVGAEIKRLSKEYNIQDFVVLTPVKSTEIKRYSYQLLSESIKEEVVHG"
     gene            complement(8332..9111)
                     /locus_tag="IBJ56_000204"
     CDS             complement(8332..9111)
                     /locus_tag="IBJ56_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HAM3416489.1"
                     /translation="MITIKNIQKSFGENKVLKGIDLTVKKGEVVTILGPSGSGKTTFL
                     RCLNLLERPENGEISMHDQIINCKKPSKKEVLQLRKNTAMVFQQYNLFSHKTVIQNVM
                     EGLTVARKMPKKIAREIAERELTKVGLADKFSAYPSQLSGGQKQRVGIARALAINPDF
                     ILFDEPTAALDPELVGEVLEVMLEIARAGATMIVVTHEMEFAKRVADQVVFMDGGLIV
                     EQGTPDEVFNHTKEERTKRFLHRVSADYLYEIKEVKKERVI"
     gene            complement(9108..9815)
                     /locus_tag="IBJ56_000205"
     CDS             complement(9108..9815)
                     /locus_tag="IBJ56_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HAM3416490.1"
                     /translation="MPLDVPFIGTAVMAMLKTIPLTLAMTFFPILFGFIIAIGMTLIR
                     MYHVRFLEPIAKFYVSFFRSTPAILHIMLIYLGIPLLVDFLSKSFGLGISANKIPVVI
                     FVIIALSFTAGAYLTEILRSGIIAVDIGQMEAAYSVGYTHGQAIRKVLLPQAFMIALP
                     NFTNLCIGFLHTTSIAAIVAVPEITGMATIVASDNYAFLEAFIGAALIYWFLTILIEA
                     INYILEKNIAKYRGGTV"
     gene            complement(9829..10545)
                     /locus_tag="IBJ56_000206"
     CDS             complement(9829..10545)
                     /locus_tag="IBJ56_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HAM3416491.1"
                     /translation="MDKAFDVKMIADFIPTLAGYLPITLYILALSLIFGFILGVLLSL
                     PRIYKIPVLDQLARVYISFFRGTPIMVQLFIVFYGIPALSSIVGIDLSQMDPLYAAIA
                     TYALSSAATIAEVIRAGVNSVDAGQAEAAYSIGLSSRQTFLRIILPQALYQALPNFGN
                     LVIGYLKDTSLAFSIGVMDMSGRGQTLITLSNHALEVYISLSIIYYLTAVLLEYSFKW
                     IEKRVKKENTRFTSIFDIEL"
     gene            complement(10567..11376)
                     /locus_tag="IBJ56_000207"
     CDS             complement(10567..11376)
                     /locus_tag="IBJ56_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3416492.1"
                     /translation="MKKKYGILALALTAALTLSACGGKEEPEAANQKVQTITVGTGTQ
                     FPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQ
                     MEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLK
                     KINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDV
                     LSNAKVYFMLGKDETKLSKDVDEALQSIIDDGTLKKLSEKWLGADYSKEQY"
     gene            complement(11393..11929)
                     /locus_tag="IBJ56_000208"
     CDS             complement(11393..11929)
                     /locus_tag="IBJ56_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3416493.1"
                     /translation="MTEDIFRVATVDDAPEFLELLSSAFQSVKELGIDWPSTNADLAM
                     VTENIVNSSAFVLERNGKLISTITVRFPWESSSPPSKYPFVWWFATAPELAGQGIGDK
                     LLTYVEERVLRDTLKAPALTLGTSARKHPWLLDMYLRRGYEVYFEHEEDGDVGVMMRK
                     ILIPEKFDATLLGIPSWT"
     gene            complement(11945..12490)
                     /gene="ssuE"
                     /locus_tag="IBJ56_000209"
     CDS             complement(11945..12490)
                     /gene="ssuE"
                     /locus_tag="IBJ56_000209"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HAM3416494.1"
                     /translation="MGKVTIIAGGIKTESRLTGLTQLAANELVTNGLEVNIIEVHKIN
                     AEALVTADFAHSDIQLANSEIESSSGVIIATPIFKAAYSGVLKAYLDLLPLKALKGKV
                     VLPLGLGGSNGHLLALQYALDPVLKELGAETILKGQFTVDKQIERLGDGLYEIESSAK
                     ERLDIALNQFISLLNQQSVEV"
     gene            12733..13632
                     /locus_tag="IBJ56_000210"
     CDS             12733..13632
                     /locus_tag="IBJ56_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3416495.1"
                     /translation="MEFRTIKTFYTVVNTGSFQRAAEVLNYSQPTISMRIKQLEQDLD
                     VQLFERGKTLKLTHAGRLFYERAGQLIAQYEVLDHTIFDLKNGNAGLIKVGISEPSAS
                     LVFPKILKTFLADFPKLMVNVSVDDANTCSQKLIDGEIDFAICGEPELILENFYFPFF
                     HDSLDLIVSESHPLASRTSVELRDLRDECFIFTPANCPIRIQIEQHLKRAIGSDYKKM
                     ELTSSMSHKYFVRENVGVSIFTSTAHSELLDGTVRIPIENLPISPPIGLLTNQKEKDF
                     DSTTKELIDRIIYYFDDKKRQLG"
     gene            complement(13658..15610)
                     /locus_tag="IBJ56_000211"
     CDS             complement(13658..15610)
                     /locus_tag="IBJ56_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HAM3416496.1"
                     /translation="MEIFELILLMLSAVFLSNVLSRFLPGIAVPLIQVILGIILAIPL
                     GDHTMDLNPELFLLLFMAPILFNDGASTDKKSLWKNRKAILSLSIGLVFVTVGVLGAF
                     IHYLIPAIPFAAAFALAAALAPTDAVAVGALAEKVRVPHKIMHILEGESLINDASGLV
                     SFQFAVLALVTGTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTS
                     FMLMEILLPFLIFMVAEKVGVNGILAVVSGGMVHSFSYKGLNPEIAQLNLLSKNTWSV
                     IIFSLNGLVFILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFFR
                     NYEENPKVDLVSRLKNTFLYTVAGVRGTITLVSALSLPFVLGNGNAFPERDLLIFIAA
                     GVIITTLLLANFTLPLFADKKDKIAADHTTDIVLLRDIVQQLQAYKTDENAVEMNKVL
                     NMYNNRIFSLMEHKEVNATEKELRRLTQEWQLENTRRLVFERKIDTGVGLSHMMRLGK
                     RLYVQTRAEKYRARMRYRQLLSHRFRDFRFVPLTFEERRKEIAKLQNENNLFVIQKLQ
                     ELDSNEYNPEIISLYLMNFERALGRGKNKKESNDEALQTTIDLASQIERETIQHYFEK
                     GTITRKEMKVYRDNLLAIEANMQLEF"
     gene            complement(15734..17332)
                     /locus_tag="IBJ56_000212"
     CDS             complement(15734..17332)
                     /locus_tag="IBJ56_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAM3416497.1"
                     /translation="MKLWKNATFYQMTAEGDQVSAVLTENGHIYAVGEARELEKQYAA
                     NITETIDLEGKVVFPGFVDAHIHLLWYGQALERLNLNQTTTKKEALALIAERTKQLAS
                     DEWLFVEGYDENKWSDEQTLISLADLDEVSQTNPILVRRIDYHSVSINSALQAHIADF
                     SENGFDGGGEIVRDKAGNFTGILRDNATTMAIDSFPAATPSELSAWLKIAITDLWSKG
                     ITGAHSEDLHYFTGFTSTLAAFRNTIGANKMPFRAHLLVHHAELAAFSASNESFVSGD
                     AFLELGAMKIFYDGTVGSRTALMSAGYADNLDEKGLQIHSDQAFEDLVNAARKAGLPV
                     AIHILGDQAFANVIRTLRANPPREGQYDRLIHTPWLTEALIEEAAGLPVLFDIQPQFM
                     ASDLPWALEVLGENHPPLAFAWKTLLQAGFPLAGGSDAPIEVPNPFWGIHAAVTRTAN
                     ADLDGVEYWPEQALTVFEAIQLYTKGAAFAGYKTTTRGQIAPGFVADFTILAEDPFQM
                     KQADLRQVSAMMTVVDEQIVYQKK"
     gene            complement(17336..18577)
                     /locus_tag="IBJ56_000213"
     CDS             complement(17336..18577)
                     /locus_tag="IBJ56_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3416498.1"
                     /translation="MTKWLPKDLWIVIIGMVLLYTGLSFIWPFNMIYMTQELGMSTTD
                     ASLVLLINSGVGIVSSIIGGLIFDRFSGFISLTIGTIILVLSTASLCFFHGFPFFIWN
                     LWAVGIAMGMVFSGLYAAAGLTHPTGGRTGFNAIYVAQNIGVAIGPLLAGLLAKQGMS
                     HVYIGSFVFAIAFAGYFFFFFHKIDWKSERVSAETKHRKKGAKREFPTKLALCSFILL
                     LLTYLLCQLPHVQWQSNLSTYMTEIKGVTSSEYGNLWSLNGALIVLGQLILIPVVNRF
                     KKYLLAQIYIGIFLFILSFVVAMNASVYSGFVLGMIFLTLGEMFAWPAIPTIAYQLAP
                     KGAAGLYQGLVNGMATAARMLAPFLGAIVVQNLGGIKALFIGAFILLGCALISITLQQ
                     ILQKKDQQDKAALKISVNQGE"
     gene            complement(18778..19389)
                     /locus_tag="IBJ56_000214"
     CDS             complement(18778..19389)
                     /locus_tag="IBJ56_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416499.1"
                     /translation="MEERFTTELMFTLTNNPRFQEVAELVYWNEEEIVHCPENNEYVY
                     AIDEGNVTQCAARNSSWGKGSILGFTREETKIHPLSNTVAWKIPLTYVKDILKSMGKI
                     KVADLTMIEKNFLDRNEIDCIQWFIQEMPLRLHTTSWKVALDFFRQEIMQVVPKEICA
                     FQVKELKQQHILYELGYYLEIDVLQFHNYLRDLAYKKVLQKIN"
     gene            complement(19579..20109)
                     /locus_tag="IBJ56_000215"
     CDS             complement(19579..20109)
                     /locus_tag="IBJ56_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HAM3416500.1"
                     /translation="MRKLYTYFVLILGVAMIGLGIYLMFNPSTSLQALTIFIGIILVL
                     NGINEVISYFGEQKYWSISKWIMFDGILSILIGGFAIFESNMAERVFIIIFAIWILAS
                     AILRILTAFAVKGLPGWTVLLIMGIIGLIIAVISLFTNMLVAIAVGIILGIFFIFQGI
                     TCLSLWWVIRKGESRK"
     gene            complement(20125..20856)
                     /locus_tag="IBJ56_000216"
     CDS             complement(20125..20856)
                     /locus_tag="IBJ56_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HAM3416501.1"
                     /translation="MKLIRTKTYEEMSQEALEVVKQVINENDNPVINTTTGASFDGMF
                     EGLVKGINAGEIPIEKVFLMNLDEYVAKRDASFTVYTYMHQKFYDLINKMPKRVELLD
                     GSLADFTDEIARYKKILAENERDLQILGLGVNGHLGANEPGTPFDARLFLADSDESTI
                     KSTIMYNNLKEDEAPSQMLTLGLADMMDAKQILVTASGERKAEAVKGLLEGPIDESCP
                     ASILRNHPNVVFIIDEAAGSLLTNH"
     gene            complement(20900..21745)
                     /locus_tag="IBJ56_000217"
     CDS             complement(20900..21745)
                     /locus_tag="IBJ56_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3416502.1"
                     /translation="MTKKIVFVDVDGTLVTDDGLVPASAKTAIIKARNNGHQVYLCTG
                     RSKPELYDSILSIGFDGIIGAGGGYIEVDDEIVYHKKVANEDVVHMVDFFHEKNLDFY
                     LESNGGLFASENLEAHLDSLVYGDVENDPIAREKKANNPHPFMTSLTYGETNLYRTDV
                     NKACFLENKNVPFEEIKNEFSGKFEVLHCTVPIFGDDSGELMVPDIHKATAIEFLLTH
                     IGAEKNTTIGIGDGMNDAEMLTYCETGIAMGNAKEELKLLADEVTKSVEEDGLYASFL
                     KHGLL"
     gene            complement(21865..24648)
                     /locus_tag="IBJ56_000218"
     CDS             complement(21865..24648)
                     /locus_tag="IBJ56_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HAM3416503.1"
                     /translation="MDMVKNEWKKLFKNKILLLSFVVILFIPLLYASFFLKSVWDPYG
                     KTGDLPVAVVNNDKPVDYNGQTMDVGDQLVTKLKSNKELDWNFLSKEDAEQGLKDGKY
                     YMIVTIPKDFSKNAASVLDKDPKKMELSYKTNGSLNYLGQVVSEQGAKQLKSEVSAEV
                     TKSYAEAIFDKIKESGEGFAQAADGSGKIKDGLVKSQEGNKTISTNLKTLADSSLTFK
                     DGANTLEVGLKTYTDGVNTAAAGGDKLNDGVSTLAAGVGPLKDGVAALDGGATKLASG
                     VSTYTSGVDTLAGGINQAYTGSTALSDGLNKMNGSVPTLASGITQLNNGQKSLATGLD
                     SLVDGSNKLSAGLKELDGNLTDKQGKIAQLKQGMNDLQQGIDQLNKSVNGEDAALAKQ
                     LAALQKSLGDLQNGLTFIKSNANFDAEAIKSKINATAGVSAEDKQKIIDAIQADLDKE
                     TQKSATQVATVEQLQSGLSGLDLAAIQTQVTELQTGVAKISAGYQAVHGGTNEAFNSI
                     HQAINGSGSQTLLGGANQLTAGLKSAQAGNAKLVAGTNQLNSQVPTLTSGVGQLAAGS
                     ANMENGLSQLNDGGNQLASNSGALRSGATELQGGTNQLAAKVPTLAGGVNQLQAGSSQ
                     LAGGLNQLSANSPKLVSGVGQLADGSSKIADGSSKLANGSFQLGDGLTKLTDGSTELT
                     DKLADGAQQVKDTKATDKTFNMIAAPTKLAHNEYTHVSNYGHALAPYVLSLALYVGAL
                     VFNFIMPIRRVSMEGQPAYKWWLSKLSLGFVAAVAMALLEGGIMIALGLRPDSIVEFF
                     GTAIITALAYMFLIMLLAMTFDNPGRFIAMVLLIVQLAGSGGTFPMPLTGWFFNLIHP
                     FLPMTYSIYAFRESLAAGMGPNVYSMSMLVLTIIMIACVGLLYLSMSHLKKRHDAHES
                     ALDDNQKLMALEN"
     gene            complement(24682..25152)
                     /locus_tag="IBJ56_000219"
     CDS             complement(24682..25152)
                     /locus_tag="IBJ56_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HAM3416504.1"
                     /translation="MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYIS
                     KILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFS
                     DYHEFAESGIHTITSAFRNADKEYANYLYSQKLSVLVEQVIGKERTTIIDWNEA"
     gene            25545..27068
                     /gene="gadC"
                     /locus_tag="IBJ56_000220"
     CDS             25545..27068
                     /gene="gadC"
                     /locus_tag="IBJ56_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate:gamma-aminobutyrate antiporter"
                     /protein_id="HAM3416505.1"
                     /translation="MSKQAKSLTLFGFFAITASMVMTVYEYPTFATSGFHLVFFLLLG
                     GFLWFLPVALCAAEMATVDGWQEGGIFSWVGNTLGERFGFAAIFFQWFQITVGFVTMI
                     YFILGALSYVFDFPALESNPFIKFIGVLIIFWGLTFSQLGGTKNTAKIAKFGFIIGIL
                     IPAIILFILGIAYVAGGNPLHVTFSKEAFIPDFSKASTLVIFVSFILAYMGVEASASH
                     VNEMTNPKRDYPLAMIMLVILAIALNTIGGLTISAVLPLKDLSLSSGVVQTFQALILH
                     FGSGLGWAVKLIAIMIALGVMGEVSAWVVGPSRGMYTAAEQGLLPEKMKKVNKHGVPV
                     PLIMVQGVVVTIWAAILTFGGGGNNLSFLTAISLTVVIYLVGYLLFFIGYLVLIFKKS
                     SLKRTYQIPGGKIVKVIVALIGLVTSVFALCISFVPPASIAAKSDTTYMVILSISFIV
                     TVLIPFIIYAVHDKKDISPKDITHLESSDINKFTHPRARGEHIINPDEKHIMNQDKL"
     gene            27081..28475
                     /locus_tag="IBJ56_000221"
     CDS             27081..28475
                     /locus_tag="IBJ56_000221"
                     /EC_number="4.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HAM3416506.1"
                     /translation="MLYSKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLV
                     KDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNII
                     ADLWHAPKDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSG
                     YQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDD
                     IYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKY
                     GLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYG
                     FEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLA
                     DRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNNAHIL
                     FHDTQQSGVHGFTH"
     gene            complement(28484..29998)
                     /locus_tag="IBJ56_000222"
     CDS             complement(28484..29998)
                     /locus_tag="IBJ56_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HAM3416507.1"
                     /translation="MLTNYIEKDIKRKCLICDFLLKNKHTNLDEIAEYMETSRVTVRS
                     DIHALNEELDGLIVIQMKECVDNWVYQCRLQNGATERKVLYKLYDNSMFLKCVAFFVT
                     NVEERKFTDFMDTYFISHSHAYRLKHKVEAFLREIDLTLDNNRITGKEYRVRYLIALL
                     QAEYGVLIYPLLDEEKQMIDDFMATLNLRINIDTLAHNAEGHAYFRSLISMVFKRDIP
                     TSAIILDEQCQKYIESSSFLAMVRKSSKETLEKELGQEFSYNDYLYLMLIYYSTNFSI
                     IDASMKKVELEQFNELIMKNADLQVLIDLFEEYFGPEVVNHSLFRAALCYFLKKTLFN
                     LQGLIPSNERLLDKKYEPLYMVVKNVLERWNEASEYRVLLIDSHINYLTIHLYPLIYK
                     WNNPVQICIFSFNLINFESCKFQVEQELGRKVTVHETMFNSVEELNQVLTESSEPTIV
                     LCHPNCEMELKEAVDGMIIPISLAFFDRDLVDVERAIQSLRIKEHDKRLAYLRG"
BASE COUNT         8741 a         6453 c         5235 g         9602 t
ORIGIN      
        1 aattgtataa atcatttttc tacctcgatt attttagttt tttggataaa ggattctttt
       61 actgcagaag gaatgtaatc tgtcacaata gttgcttctt ctattgaaaa catttttgaa
      121 aaattcactt cattgaattt tgtatggtcc gctacaacaa aaacgcgatc agcacgttct
      181 tttgcagcac gttttacaaa tgcctcttcc atatcaggtg ttgtgtagcc atgctccgga
      241 tgcatcgcgt tggtaccaat gaaagcttta tcaaaatgat agttttgaat gttatctaag
      301 gcaactgcac caataattgc ttttgtatgc actttcattt tgccgcctaa aagataagca
      361 tctatatttt gacgaacaag ctcttcaata tgggttaatc catttgtcac tactgtgata
      421 tttcgatttg ctaggtgagt aattaattct aatgttgtgg atcctgcatc taaatagata
      481 caatcatttt cttccactag gcttgcacaa tatgcagcaa ttactttttt actttgaatg
      541 tttttgaatg atttttcatt catacttggt tcttgattat gaagttttac aagtttcgcc
      601 ccgccgtgta cgcgctgaat taatccttgt tcttctaact cgattaaatc acggcgaatg
      661 gttgactctg aggtagcaag accttcaact aattcttgta atttaatcac accaagtttc
      721 tcaatactct ccataataag ttgtttacgc tctgcattta acattattac tcctccatcc
      781 aaagtcagtt taccatcttt ttctttcaaa atcaaccgtt ttcattcaaa aacaatcaca
      841 cattttcaaa ttcattcata ttataccatg tatatcgcca taacccttca caattattca
      901 ttcagcgttt ttcttataca gttctaattt ttagcagtat acttggttag aagataattt
      961 tcattttagg aggagttatt catgcataca gaattaacat ttgagcaatt agaaagtttt
     1021 tctcgaaaat ggcgtgaaaa tccagataaa ttggtatttc aagctagtat tatcaagaat
     1081 gggattaaag cagcaactga gaatcctgca tcaaaagtta gcattcaacc tgtcttttcc
     1141 cacgaagttg ctacagataa agtttctaat caacaacaaa gtggaagatg ctggatgttt
     1201 gcagcattaa atacgtttcg ccataaatta aacggaacgc ttggtttgaa ggattttgag
     1261 ttatcacaga attatactaa tttttgggac aaacttgaga aagcaaatta ctttttagag
     1321 aatataattg aaacagcaag tgaggatgaa gatagtcgat tagtttcgtg gttgcttgat
     1381 acaccccaac aagatggtgg gcagtgggat atgttagttt caattattga aaaatatgga
     1441 gtggttccaa agtcagctat gcctgaaacg tttcaaagta gtaagtctgc tgatttaaac
     1501 catctattaa atgaaagact tcgtacggat gcggttattt tgagaaatgc tattgctgag
     1561 aagaaagata ctgcagattt gaaagaagaa atgcttgctg aggtctatca actcttagtt
     1621 atgactctag gcgaaccacc taaagtattc gattttgagt atcgaaataa agacaatgaa
     1681 tttaaacaag aattacaaat tacacctaaa gatttttatg aacgctatgt agatatggat
     1741 ttgaaagatt atattccact tattaatgca ccgaccaaag ataaaccttt taatcaagct
     1801 tttacagtgg aatatttagg caacattgta aatggtacac ctattaagta tttgaatgta
     1861 gaaatggatg tcttgaaaaa agctgctgct gatcagatta aagatgggga aacagtttgg
     1921 tttggatgtg atgttggaca actttcagaa cggaataccg gtattatgga tacggatatt
     1981 ttcttgctta atcagacttt tggctttaaa actgcgatga ctaaagctga acgcctggat
     2041 tataaacaca gtatgcttac acatgcgatg gtattaactg gagtgaacat tgctaatgga
     2101 gaagtaaatc gctggaaagt ggaaaatagt tggggagaaa aaattggtaa taatggttat
     2161 tttgttgcta gcgatgcttg gatggatgag tttacattcc aagtagtggt gcataaaaaa
     2221 tatctatcta aggaattaat tgaatccttt aaccaaaagc caattgtgtt aaaaccttgg
     2281 gatccaatgg gttcgctcgc actttaaaat gcgaattcgg aaatgatttt tattccattc
     2341 atttgaaaaa gagctgctgc tacgccggta ccatctttta tttttcctga gaaggtaccg
     2401 tcgtaaatag cacagctacc acaagatgga cttttttcct tcatgattat ttgcgtaata
     2461 ccgagttctt gcattttaat tagagtaagt ctcgctccgt tcttatattc ttctgtcaca
     2521 tctgttcctt tgttatcaat gacttttgca tgtcctaacc agacatcttt gccatcacca
     2581 cctattattt ctgctggatt tcttggtgta ggcagtccgc cggtaacttc tggacaaaaa
     2641 ggaatcgctt ctcctctttc taccatttgt tttattttgg ttatttcttt atctttcccg
     2701 tcatatctac aggcaattcc ggctaggcaa gcacttactg caatcatttt attttcctcc
     2761 tttatattca catttatttt aacataaaaa agctgccccc aacttatagg cgacagctct
     2821 gagattatta gatattttgg tatgctacgg cgatttgcgt accgattaaa gcattgtgtt
     2881 ttacaagctc gatatttgct tcgaggctct taccatctgt tagttctttt actttaccaa
     2941 gtaggaatgg tgtaacgtct ttcccgtgaa tgtgattttc ttcagcttct ttaagcgctg
     3001 tttggattac atcgttaatt actttttcgt ccatagcgaa ttcttctggg attgggttag
     3061 taattactgc gccacctttg atttgaagat cccatttcgc tttaagcgat tctgcgataa
     3121 cttctggagc atctgcacgc aatgttaatt ctacatcgct tgaacgcgtg taaaatgctg
     3181 gtaatacgtc ggtttggtaa ccaataactg gaaccccttt tgtttctaag tattccattg
     3241 ttaagtttag gtctaggatt gatttagctc ctgcacaaac gacagcaaca tttgttttcg
     3301 ctaattcttc taagtcagct gaaacgtcca ttgttgtttc ggcaccacgg tgaacgccgc
     3361 caatcccgcc agttacgaag atgccgattt ctgcgagttc agcacaaatc attgttgctg
     3421 ctacagttgt tgcgccaagt tgttttgttg caataaggta accgatatca cgacgagaaa
     3481 cttttgccac attgctactt ttagcgaata gttctagttc ttcatcagaa agaccaattt
     3541 taatttttcc gtcgattaaa gcgattgtcg ctggtacggc accgttatcg cgaataattt
     3601 gttctacgtc acgtgccatt tcaacatttt gcggataagg catgccgtga gagataattg
     3661 tagattctag cgcaacgatt gcttttcctt ctgcttttgc ttgttttact tcttcagata
     3721 atgataaata atttttcatt tgaattcctc catgtctttt tgtagttggg atgtcgataa
     3781 attttggcga acggtatact cagattcgag tgttcgcgcg gcatttacgc tccctgctct
     3841 taaaatttct ttcaatgctt ttccttctaa ccatgcgtag ataaccgcgg agcaaaatgc
     3901 atctcccgct cctgtcacgt ctacaatatt ttcaattaca attgctggtt caaaaatagt
     3961 accttcacct ttgtttgctg caactgcgcc tttactgcca tttgtaacga tgacattttt
     4021 tacgcctaga tctaaccatt tttgtgcagc taagcgccag tcttcgtcat ttttgatagt
     4081 cattcctaga tgcgtttctg attcgtctcg gttgcaaatt agccaagtta catgatcaag
     4141 tctttctggt aaatgagaca ttttgggtga agacacagga acgagtacta atggaattga
     4201 attaatttca gcaaagctgc caagatattc tagtgtttct ttcggacagt ttaaatctgc
     4261 aatgattgcg ctcgcctgac tcagcaagcc ttcatttttt gcgagtacat ctggagttaa
     4321 gtgatcatat gcatccatgt ccgctagtgc aacgagtaaa tctccattgt tttcgagcac
     4381 tgctgtataa gaaccagttg cgatgcttgg gaatgctgtg acgtaatcta agttcatata
     4441 tgtattacta gcatttttga cagcttccca gtcagagtct gttccacaag cagtgagtaa
     4501 tataacttct tttccaaggc gtccaaggtt ttcgcctacg tttctagcaa ccccgccagc
     4561 actttgtgtt gagcgcactg ggtttgatgt ggctagttgg gccttgtctt taatataaaa
     4621 cttccgatcg acgttagctc cacctataca aacgatttgt ttggcttcat ttaaaatata
     4681 agcttttcct aaaatgcgac ctttcttaat aaggccggaa ataaggtttg cgactgtcgg
     4741 tcttgataaa tcaagtatat cagcaagttc ttgttgagaa atgtaaggat ttttacggat
     4801 ggaattgaaa attatctctt ccttttcgtt cattttcgct ttattattct ccacgatata
     4861 atgcacctcc attccaaact tttgttttat tttcaaacac atgtttatta tatatgtaaa
     4921 tgctttcttt tgcaaactaa aaaacgaaaa tccgcttctt tttaggaagg aaattttcgt
     4981 ttaggttcat ttattttgaa gaatagccag ttcactttca gttaaagggc ggtattcgcc
     5041 gagtccaagt gactcgtcta attgtaaatt ccccatcgaa attcgtttta aatagctgac
     5101 tttcttacca cgtgcggcga acattctttt tacttgatgg aatttccctt cttggatagt
     5161 gacgtttatt tcgtttggtg taataatttc taaacgtgct ggtttgcaag tgtatccatc
     5221 gtcgagttca attccagctg caaaagcttc tacatcagct agagtaacat caccatcaat
     5281 tttagcgtag tatgttttat ctatatgttt tttaggtgag agcaaattgt gcgcgagtgt
     5341 gccatcgttc gttataatta gcaagccttc tgtatctttg tctaagcggc cgactgggaa
     5401 tggatcagtg agcgtgtcct cttgcgcaag caaatcgatg acggtttctg acacattatc
     5461 ctcggttgcg ctcacgacat tttgtggttt atgtagcata aaatagacga attcttggta
     5521 aacgactggt gttccatgga cagttacttg gtctttatca gggtttactt gggttttgct
     5581 atctttctga atcgtgccat tgacgacaac tgccccagat ttaagcaaag gtttcacttc
     5641 ttttcgactc ccgaaccctg tatgggacaa taatttatct aagcgcatgg tttcgctcct
     5701 ttttttcttt tattgtaaca aaaaaacgaa gcttcctcaa aggtactccg ttttctttct
     5761 attatatagt ttcaacaact tgtttatttt gaggtattgt taagccgagg ttgcctctta
     5821 atgtcgtagc tggatattca tttcggtata aacctcgact ttgcagaaga ggaataactt
     5881 gttccacaaa agtttcaaac gttccaggaa tatcagaagc aataataaaa ccatctgcag
     5941 catcattttg gaaccaaaca tcgattaaat cggctacttg ttcttttgtt cctataaaag
     6001 gtgtttttgg cgttgctgct tctgttgcca cttgacgaag ggttaggtgc cgttctttcg
     6061 cttctttttt gattcggtct gttgtgcttt gaaaggcatt tttgccaata tcaccaaggt
     6121 ctgggaatgg agcatccaaa tcaaattgac ttaaatcata gtcgtcgaag taacgcgcta
     6181 ggtaagttac cgcattttct attggaatta ggctagcaaa ttcagtatat ttggcttctg
     6241 cttcttccaa cgtgtccgct acaattgggc taattcctgg aaaaattcgg acttcatctg
     6301 catttctacc agccttttca gcgcgggctt tcacatcttg atagaattca atggcttctt
     6361 ctaaggaatc agaatgagtg aaaatggctt ccgtgttttg agcagcgaaa tcgcgccccg
     6421 tactagacgc gcctgcctgg aaaacaactg gttctccttg cttcgagcgg ccgatattta
     6481 acggcccttc gacttggaaa tactctcctt gatgatttaa acgatgtaat ttttcaggat
     6541 taaagaattc accggtttct ttattataag tgaacgcatc ctcttcccaa gaactccaga
     6601 gtccgcgaac cacttttaaa tgttctgctg caatggtgta gcgatcgctg tgggttggga
     6661 gatttttctt gctatgattt cgcgcggcgc cttcttgcgg agaagtgact agattccaac
     6721 ccgctcggcc gccgctaatg tgatcaagcg aagagagctg tcttgcgagt gtaaatggtt
     6781 ctgtaaaaga agtcgagaaa gttccgacaa gtccgatgtt ttccgtagac tcagctaatg
     6841 ccgataaaat cgtaattggt tcaaaacgat taagaaaatg cggaatcgat ttttcggaaa
     6901 taaaaaggcc gtctgcaata aatacaaaac taaataaccc ttgttcggca attttggcgc
     6961 gtgtcttata aaaatctaaa tccgtacttg ctgcggggtt gatgtccgga tgtcgccaac
     7021 catctgttgt tccgccaaca ccgtgaataa ttgcaccaaa ctgaattgtt tcttttctag
     7081 tcattttact tcctcctttt caaacaatgc tttttccaaa tgttccaatc cgatttctgt
     7141 aactgcttgg taggtccctt tttcaatatc gccgatttct acgactggga cataacgaat
     7201 gccgtatttc gcttgcagta cttctcgcaa ataatcatgg tcggtgacgt cgatatcttg
     7261 gaagacaatt ttttgctcag ttaaataatc tttcacatct ttacaataat gacatcctac
     7321 tttactccaa acaacgacgt tagccatgga caacttcctc ctttatcgat tcacttaata
     7381 attggtacga gtatcgcttg atttccgtag atttaactgg tgttaaaaca acaaaatctt
     7441 ggatattata ttcttttgaa aggcgtttaa tctctgctcc gacttcttgt ttggttcctg
     7501 ttattgcacc aattctttgg gtaataaacc ggtatgtttg gttgatatct tttacgtagg
     7561 attccgcttg ttcgcgcgat ccgacattaa ctctacgtcc gtccgcaagc tcgactttga
     7621 ttgactctcg ctctggaata tgtcggtctg ctgcgatttt agtctcagct actacaacaa
     7681 ttggtgctag ttggaaacta gcttttgtgt ttattcggta ctgttcaaat agctcgcgtg
     7741 cttcttttaa aacagcttct tctccattta taaaataagc aaacacaaag gaaataccta
     7801 gtttggcagc ttgtttcgcg ctagctgcac ttcctccaag caaaaatatc tctggtttgt
     7861 tttctggaag tggttttgct gcaatagcca cctctgaatg atgggttaca aaatcgacta
     7921 gttctttcaa tttggcatca aaggttcgcg taggttttac gaagtctttt tgaagggcat
     7981 cggttgctgg ttgaaatccg cctggcgctt ttccgacgcc aagtgacatc cgacccggcg
     8041 ctaagttctc aagcacatga aattgttcag cgactttata tggactataa tgttgtagca
     8101 ttattccgcc agatgcaagc ttgattgtgc tcgtttttgc agcaatatac cctaaaagaa
     8161 cttccggagc tgcgccagct atttcgtctg aattatgatg ctcggcaacc cagaaacgat
     8221 gatagccgag ttgttctgcg agttgcgcaa gttctacggt attttgcaaa gcttcactag
     8281 gtttttcgcc tggatttata atactttggt ccaaaatact gaatcgaatc gtcatatgac
     8341 acgctccttt ttcacttctt tgatttcata taaataatcc gctgaaactc ggtgtaaaaa
     8401 gcgttttgtc cgttcttctt tggtatgatt aaacacttca tcgggagtac cttgttcgac
     8461 aattagtcca ccatccataa aaacgacttg atctgccact cgtttggcga actccatttc
     8521 atgcgtaacg acgatcatcg ttgcacccgc acgtgcaatc tctagcatta cttccaatac
     8581 ttcaccgaca agttcaggat caagtgcggc ggttggttca tcaaacaaaa tgaagtctgg
     8641 attaatagcg agtgctcgtg cgattccaac gcgctgtttt tgcccgccgg aaagttggga
     8701 aggataggca ctaaatttgt ccgccaaacc gacttttgta agctctcgtt ctgctatttc
     8761 acgtgcaatt tttttcggca tttttctagc gactgttaga ccctccatca cattttgaat
     8821 gaccgttttg tgcgaaaaga gattatactg ttggaaaacc atcgccgtat ttttccgcag
     8881 ttgcaaaact tcttttttgg atggtttctt acagttaatt atttggtcat gcatcgaaat
     8941 ttcaccattt tcaggtcttt ccagtaagtt taggcatcgt aaaaaggttg ttttccctga
     9001 gccacttggg ccaagtattg ttactacttc accctttttc accgttaaat caattccttt
     9061 taaaacctta ttttcgccaa agcttttttg aatattttta attgtaatca tactgtccct
     9121 cctcgatatt tagcgatatt tttttccaag atataattaa tcgcttcaat caaaatagtt
     9181 aaaaaccaat aaatgagtgc ggcaccgata aatgcttcga gaaacgcgta attgtcggaa
     9241 gctactattg ttgccattcc agtgatttct gggactgcaa cgatggcagc gatggatgtg
     9301 gtatgtaaaa atccgatgca caaattcgtg aaattcggta gggcaatcat gaaggcttgc
     9361 ggtaagagca cttttcgaat cgcttggcca tgcgtatatc ctacagagta agccgcttcc
     9421 atttgtccga tatcaaccgc aataataccg gagcgcaaaa tctcggttaa gtaagctcct
     9481 gccgtgaaag acagcgcgat aatgacaaaa ataacgaccg gtattttgtt tgcagaaatg
     9541 cctaatccga atgatttgct caaaaaatcc accaataggg gaatgcctag gtaaatcagc
     9601 ataatatgca gaatcgctgg ggtgcttcga aaaaaagaaa cgtaaaactt cgctatcggt
     9661 tctaaaaatc ggacatgata catccgaatc aacgtcatac ctatagcgat aatgaaaccg
     9721 aacaatatcg gaaagaaagt catcgcaagt gttaacggga tagtttttaa cattgccatt
     9781 acggcggttc caataaaagg cacatcaagc ggcatcatta tctctccttt ataactcgat
     9841 atcgaaaata ctcgtgaatc tggtgttttc ttttttaact cgtttttcaa tccatttgaa
     9901 ggaatattcc agtaagacgg ccgtcaaata gtaaataatt gataaagaaa tatagacctc
     9961 tagcgcgtga ttacttagtg ttatcagcgt ctgacctctt cctgacatat ccattactcc
    10021 aatcgaaaaa gcgagcgacg tatctttcaa ataaccaatg actaaattgc caaaattcgg
    10081 tagagcttga tagagtgctt gtggcaagat gattcgtaaa aacgtttggc gactactcag
    10141 accaatacta taagccgcct ctgcttgtcc ggcatccacg ctgttcacgc ctgcgcgaat
    10201 cacttcggca atggtcgctg cactgcttaa cgcataagtc gcaatcgcag cataaagggg
    10261 atccatttgt gataaatcaa tgccaacgat gcttgaaagt gccgggattc cgtaaaaaac
    10321 aataaatagt tgaaccataa tcggcgtccc acggaaaaac gaaatataca ctctggccaa
    10381 ttgatctaaa actggtatct tataaattct tggtaaagat agtagaacgc ctaatataaa
    10441 tccaaaaata agcgagagtg ccaaaatata caacgtaatc ggtaaataac cagctaacgt
    10501 tggaataaaa tcagcaatca ttttcacatc gaacgcttta tccattttaa tggcgccctc
    10561 cctcgtttaa tattgttctt ttgaataatc tgcgccaagc catttttcac ttaatttttt
    10621 aagtgttcca tcatcaataa tagattgaag cgcctcatct acatctttgc ttagttttgt
    10681 ttcatctttt ccgagcatga agtatacttt cgcattagat agaacatcgc caactacttt
    10741 ttctttgata gcgcttgttt tattttggaa atctaccgcg aatggtgtag aaatcgttgc
    10801 atcagcgcgg ccagttttca gttggttcgc tgtatcattt gacccttgac cttcataagc
    10861 aatttcaaaa ttattgcctt gttcttcatt aatttttttc aatacgagcg caccattcga
    10921 tgttgcgctt gtgataacgc gttttccagc taaatctttt gtgctgttta tgctgttatt
    10981 actgtctaat accgtcaatt gtaatgggaa attattgtat gctacatcat taaataaaaa
    11041 tttcttctcg cgttctttac ttttttccat ttgatgcgcg acaatgtcta cttttccagc
    11101 tccaaggcta acgagtaaat tagaaaaatc catcgtttta aatttaaatt tatagccggg
    11161 caaacgttta tcgatttctt ttactagttc gacatcataa ccggttaatt tcccattttc
    11221 atccaaaaag cagacatttg gaaattgtgt tccagtgcca accgtgattg tttgtacttt
    11281 ttgattcgct gcttctggtt cttcttttcc tccacatgcg cttaatgtta atgcggctgt
    11341 gagagccagt gccaaaatcc catatttctt tttcatcctt tttccccctt ttttatgtcc
    11401 agctaggtat tccgagtagt gtggcgtcga atttttccgg aattaagatt ttccgcatca
    11461 taacacccac atcaccgtct tcctcatgtt caaagtagac ctcataaccg cggcgtagat
    11521 acatatccag caaccacggg tgttttctag cagaagttcc aagtgtcagt gccggtgctt
    11581 ttagcgtgtc gcgaagtacc cgttcttcta catacgttaa taatttatcg ccaatcccct
    11641 gtcctgcaag ttccggtgcc gttgcaaacc accaaacaaa tggatattta gaaggtggtg
    11701 agctgctctc ccacggaaaa cgaacggtaa tcgtagaaat taatttgccg tttcgttcta
    11761 aaacaaaagc agaagaatta acaatatttt ctgtcaccat cgctaaatcc gcattcgttg
    11821 acggccaatc aattcctaat tctttcaccg attgaaaagc actcgacaac aattccaaaa
    11881 attccggcgc atcatccaca gtcgctactc taaaaatatc ttctgtcatt tcccgctctc
    11941 ctccttaaac ttccactgat tgttgattta ataatgaaat gaattggttt aaagcaatat
    12001 ctagccgttc tttcgctgaa gattcaattt catacagccc atccccgagc cgttcaattt
    12061 gtttgtctac cgtaaactgc ccttttaata tcgtttctgc tccaagttcc ttcaacacag
    12121 gatcaagtgc gtattgcagt gcgagcaaat gtccgtttga tccaccaagt ccaagtggca
    12181 aaacgacttt ccctttcaaa gctttgagtg gcaaaagatc caaataggct ttcaacactc
    12241 ctgaataggc tgctttgaaa atcggggtag caataataac gcccgaactt gattcaattt
    12301 cactatttgc caattgaata tctgaatgcg cgaaatcagc ggtgactaat gcttctgcgt
    12361 ttattttatg cacttcgatg atgttcactt ctaaaccatt cgttactaat tcatttgctg
    12421 ctagttgagt taatcctgta agcctggatt ctgttttgat tcccccagca ataattgtca
    12481 ctttccccat caaatcgccc cttttcaatc cctatcaact tacttggttt ttagatatta
    12541 gctatactat aaagtaaaag attgggtttg gctaatcaaa aaaactaatg gctaaccaca
    12601 gtaatactaa tacttctgcc tgaatccgca ttattcctat gaattttatc agattaataa
    12661 attgcttctc ctatttttac agtgtatact gttagaaata tcaaaaaact ccaatatgaa
    12721 gggggaatta tattggaatt tcgaaccatt aaaacttttt atacggtggt taatacggga
    12781 agttttcaac gcgcagcaga agtattaaat tattcgcaac cgactatttc gatgcgaata
    12841 aaacagttgg aacaagactt agatgttcag ttattcgaac gtggcaaaac tttaaaacta
    12901 acgcacgcag gtagattatt ttacgaaagg gcgggccagc tcatcgctca atatgaagta
    12961 ctcgatcaca cgatattcga cttaaaaaat ggcaacgccg gccttatcaa agttggaatt
    13021 tccgagccta gcgctagtct cgtttttccg aaaattttaa aaacgtttct agcggatttt
    13081 ccaaagttaa tggtgaatgt atcggtggat gatgcgaata cttgtagcca aaaactcatt
    13141 gatggggaaa ttgattttgc gatttgcgga gaaccagagc tgattttgga gaacttctat
    13201 tttccatttt tccatgattc gttagattta atcgtctcag aaagccatcc gttagcttca
    13261 cgtacttctg tggagttacg tgatttacgc gatgaatgct ttatcttcac accggcaaat
    13321 tgccccatcc gcatccaaat cgaacagcat ttaaaacgtg ctattggtag tgattataag
    13381 aaaatggagc tcacaagtag tatgtcacat aagtattttg ttcgtgaaaa tgttggtgta
    13441 tctatcttta ctagcaccgc gcactcagaa ctacttgatg gcacggtccg cattccgatt
    13501 gaaaatttac ccatctcacc gccaattgga cttttaacta accaaaaaga aaaagatttt
    13561 gacagcacga cgaaagaact tatcgaccgg attatttatt attttgatga taaaaaaaga
    13621 cagctaggct aaaaaattag cttaactgtc ttttttatta aaattctaat tgcatattcg
    13681 cctctatcgc aagtaaatta tcacgataca ctttcatttc tttccgcgta atcgtacctt
    13741 tttcaaagta gtgttgaatt gtttcgcgct caatttgtga agctaagtca attgttgttt
    13801 gtagcgcttc atcattgctt tcttttttat ttttcccacg acccaatgct cgctcaaaat
    13861 tcattaaata aagcgaaatg atttctgggt tatactcatt tgaatccagt tcttgtagtt
    13921 tttgaatgac gaatagattg ttttcatttt gcagtttagc aatttctttt ctacgttctt
    13981 caaaagtaag aggcacaaat cggaagtctc gaaaacgatg acttaataac tggcgatacc
    14041 gcattctcgc tcggtacttc tctgctcgtg tttggacgta gagtcgtttt ccaagccgca
    14101 tcatatgcga aagtcccaca ccagtatcaa tttttcgttc aaatactaat cttctcgtat
    14161 tttcaagttg ccattcttgc gttaatcgcc gcaattcttt ttcagtagca tttacttcct
    14221 tatgctccat caaagagaaa atccgattat tatacatatt caacacttta ttcatttcca
    14281 ctgcattttc atctgtttta tacgcctgta attgctgcac aatatcgcga agtagtacaa
    14341 tatctgtcgt atgatccgcc gcaattttgt ctttcttatc tgcaaaaagt ggcaaggtga
    14401 aattggccaa aagtagcgtc gtaataataa ctccagcagc aataaaaata agtaaatcac
    14461 gctcaggaaa cgcattccca ttaccaagaa caaaaggtaa cgaaagcgca ctgactaatg
    14521 taattgtccc gcgaacacca gccacagtat aaagaaaagt atttttcaat ctgctaacca
    14581 agtccacttt cggattttcc tcgtaattgc ggaaaaacaa gatccataaa aaccttagcc
    14641 cgagcagtaa gaaagtgatt cctagtatat acacgaatag catacctttt tgaatattag
    14701 catcttgcca aatcgtcatc aaaatttgcg gtaattgtgt ccctagtaag ataaatacca
    14761 aaccattcaa actaaaaata ataacagacc acgtgttttt tgaaagcaag ttcaattgcg
    14821 caatttcagg atttagtccc ttgtaactaa atgaatgcac cattccgcca ctaactactg
    14881 ctaaaatccc atttactcca actttttcgg ctaccataaa aattaaaaat ggtaacaaaa
    14941 tttccatcag cataaaagaa gtcatatttt cgattcctag ctgacgtaaa ccacgcatta
    15001 acatgatttt cagtaaacta agggcagctc caagcgcaat cccacctaat gaaagaagca
    15061 aaaagcttgt tccagctgac ataaatgaga atgttccggt tacaagcgcc aacacagcaa
    15121 actggaacga aacaagtccg gaagcatcgt taataagcga ttcaccttcc aaaatatgca
    15181 taattttatg gggtactctt actttttcag ccagcgcccc caccgcaaca gcatccgtag
    15241 gcgcaagtgc cgcagctaac gcaaacgccg cggcaaaagg tatcgcagga attaagtagt
    15301 gaataaacgc acccagtacc ccaactgtta caaacactag cccaatcgat aatgacaaaa
    15361 tagccttccg atttttccat aaagatttct tatccgtact cgccccatca ttaaaaagaa
    15421 tcggcgccat aaataataat aaaaataatt ccggatttaa atccatcgta tgatccccaa
    15481 gcggaatcgc caaaataatc cctagtatta cttgaattaa aggcactgca atccccggca
    15541 aaaatcggct taatacatta gacaaaaaca ccgcgctcaa cattaataaa atcagttcaa
    15601 atatttccat taatacatcc ctcgttcccg tatccgtgcc actgagtcag aagcgtggca
    15661 tttcttccgt tcccatatta gcaaaaaaac ttttcagaaa catccgtctc tgtatggagt
    15721 ttcctagcta tttttacttc ttctgataga caatttgttc gtctacaact gtcatcatag
    15781 cgctcacttg acgaaggtct gcttgtttca tttgaaatgg atcttctgcc aaaatcgtaa
    15841 aatcagcaac aaaacctggt gcaatttgtc cgcgtgtagt tgttttgtag cccgcaaatg
    15901 ccgcgccttt tgtatatagt tgaatcgctt caaatacagt gagtgcctgc tctggccaat
    15961 attctactcc atccaaatct gcattcgccg ttctagtaac agccgcatgg ataccccaaa
    16021 acggattcgg cacttcaatc ggcgcatcgc ttcctccagc tagtgggaaa ccagcctgta
    16081 gaagcgtttt ccaagcaaaa gctagcggtg gatgattttc tccaagtact tctagtgccc
    16141 aaggaagatc actcgccatg aattgtggct gtatatcaaa tagcacaggt aacccggccg
    16201 cttcttctat tagcgcttct gtaagccaag gtgtgtggat tagtctgtcg tattgccctt
    16261 ctctaggcgg attggcacgt aacgttcgaa taacattagc aaaggcttga tcccctaaaa
    16321 tatgaatagc aacaggtaat cctgcttttc gcgccgcatt aaccaaatct tcaaacgctt
    16381 gatcagaatg aatttgcaat cctttttcat caaggttgtc cgcatatccc gcactcatca
    16441 acgccgttcg cgagccaact gttccatcat agaaaatttt catcgcccct aattctaaaa
    16501 aggcatcccc acttacgaaa ctttcattag aagccgaaaa agcagctagt tctgcgtggt
    16561 gaaccagcaa atgcgcacga aacggcattt tattagcacc aatagtattt cgaaaagcag
    16621 ctaaagtcga agtgaatccc gtgaaataat gtaaatcttc cgagtgtgca cccgttatgc
    16681 ctttcgacca cagatcagtt atcgcgattt taagccatgc gcttagttca gaaggcgttg
    16741 ctgcagggaa agaatctatc gccatagtcg ttgcattatc tcttaaaatc cccgtaaaat
    16801 tacccgcttt atcacgaaca atttcgccgc caccatcaaa accattttcc gaaaagtcgg
    16861 caatatgcgc ttgtaatgca gaattaatag aaacactatg ataatcaatg cgccgaacta
    16921 aaatcggatt tgtctggcta acttcatcta aatcggctaa agaaatcaac gtttgctcat
    16981 ctgaccattt attctcatca tacccttcca caaacaacca ttcgtcacta gcaagttgct
    17041 tggttctttc agcaatcagg gctagtgcct cttttttagt agtggtttgg tttaaattaa
    17101 gacgttctaa agcttgtcca taccaaagta agtgaatatg cgcatcaacg aacccaggaa
    17161 ataccacttt cccttctaag tcaatcgttt cggtaatatt agccgcatat tgtttttcta
    17221 gttctcgtgc ttctccaacc gcataaatat gaccgttttc tgttaatacc gcagaaactt
    17281 gatccccttc agctgtcatt tggtaaaagg tagcattttt ccataatttc attttttatt
    17341 ccccctgatt gacggaaatt ttcaaagctg ctttatcttg ttggtccttt ttctgtaaaa
    17401 tttgttgtag tgtaatacta attaatgcgc atccgagtaa aataaatgcg ccaataaata
    17461 gagctttaat gcctccgaga ttttgaacga caattgctcc taaaaatggt gctagcatgc
    17521 gcgctgctgt tgccatcccg ttcacaagac cttgatacaa gccagccgct ccttttggtg
    17581 caagttgata agcaatcgtt ggaatcgctg gccaagcaaa catttccccg agcgttaaga
    17641 aaatcattcc gagtacaaag ccactataaa cacttgcatt cattgcgact acaaaagata
    17701 agataaataa gaaaataccg atataaattt gtgcgagtaa atatttttta aatctgttta
    17761 caacggggat taaaatgagc tgaccaagta caatcagcgc gccatttaaa ctccataaat
    17821 ttccgtattc gctcgatgtc acacctttga tttctgtcat gtacgtagat aaattcgact
    17881 gccactgcac atgcggcaat tggcaaagca agtatgtcaa taataataga ataaaagaac
    17941 acaaagctag tttagtcgga aattcgcgtt tagcgccttt tttgcgatgt tttgtttctg
    18001 cgcttactcg ctccgatttc caatcaatct tgtggaaaaa gaagaagaaa tatccagcga
    18061 aagcaatcgc aaatacaaaa gaaccaatgt atacatgact cattccttgt ttcgctagaa
    18121 gccctgcaag caacggacca atagccacgc caatattttg cgccacataa atcgcattaa
    18181 atccagttct tcctccagtc ggatgtgtta accctgctgc tgcgtataat ccagagaaga
    18241 ccatccccat cgcgatacca accgcccaca aattccaaat aaagaatgga aatccgtgaa
    18301 aaaagcacaa cgaagcagtt gaaagcacta atataatcgt tccaatcgta agtgaaataa
    18361 aaccagaaaa ccggtcaaaa ataagtccgc cgataatact agaaacaatc cccactccag
    18421 aatttatcaa caacactaat gaagcgtccg ttgtcgacat ccctaactct tgcgtcatgt
    18481 aaatcatatt gaaaggccaa ataaacgata gccctgtata tagtaacacc atcccaataa
    18541 ttacaatcca taaatccttt ggtaaccatt ttgtcatttc ctacactttc ccttcattaa
    18601 aactcacctt ttttagggta tcacaaccat ccacattcga aaagaaaaac ttcatcaaaa
    18661 aaccacctag caaattttgc tggtggctaa taagggactg gcgataaatc cctatcatgg
    18721 ttacttataa gtgtactatg aattcgaatt tttgtctgtg ctaaattaag aaatatttca
    18781 attaattttt tgtaaaactt ttttataggc taagtctctc aaataattat gaaattgtaa
    18841 tacatctatt tcaaggtaat agcctaattc atatagaata tgttgctgct tcaattcttt
    18901 tacttgaaaa gcacatattt ctttaggaac aacttgcata atctcttgtc taaaaaaatc
    18961 taacgctact ttccaggaag ttgtatgtaa tctcaaaggc atttcttgaa tgaaccactg
    19021 aatgcaatca atttcatttc gatctaaaaa attcttttct atcatggtta aatcagcaac
    19081 cttaatctta cccatacttt tcaagatatc ctttacatat gttaaaggaa ttttccaggc
    19141 taccgtgtta gagagggggt ggatttttgt ctcttctcga gtaaaaccaa gaatgcttcc
    19201 ttttccccaa gaactatttc ttgcagcaca ttgtgttaca tttccctcgt caattgcata
    19261 cacatattca ttgttttctg ggcaatgaac aatttcctcc tcgttccaat acaccaattc
    19321 cgctacttct tgaaaccttg gattattagt taacgtaaac attaattccg ttgtaaacct
    19381 ttcctccatt tatcccgcct cctcaaaatc ctcacatcaa ttcatctctc tttatcataa
    19441 taaaaaaaaa gcgagcaaag agttctcaaa gaaccatctt ctcgcttctt atgtccattt
    19501 tgtgacaaaa tcactttttc agttttatta atgtaatttt cttagcattt taacggaaaa
    19561 caatataaaa aattatcttt atttccgaga ttcacctttt cgaataaccc accaaagaga
    19621 aagacatgta ataccttgaa aaatgaaaaa tattccaagt ataatcccaa ctgcaatcgc
    19681 tactagcatg tttgtgaaca aggaaataac agcaataatc aatcctataa ttcccatgat
    19741 aagtagtact gtccatcctg gtaaaccttt tacagcaaac gccgttaaaa tacgtaatat
    19801 cgctgaagct agtatccaaa tcgcgaatat aataatgaaa acacgttccg ccatatttga
    19861 ctcgaaaata gcaaatccac caataaggat tgataaaatc ccatcaaaca ttatccattt
    19921 ggaaatactc caatattttt gttctccaaa ataagaaatc acttcattaa tcccatttaa
    19981 aactaaaata atcccaataa aaatagttag tgcttgcagt gaagtacttg gattaaacat
    20041 taaataaatt ccaagaccaa tcatcgccac accgagaatt aaaacgaaat acgtgtataa
    20101 ctttctcatg gttttgcccc ctttttagtg attagtaagt aatgaccctg ccgcttcatc
    20161 aataataaat acgacattcg gatggttacg taaaatcgac gctggacaac tttcatcaat
    20221 tggtccctca agtaaacctt taacggcttc tgcttttcgt tcaccagaag cagtgactaa
    20281 gatttgtttt gcatccatca tatcagctaa tccaagtgta agcatttggg atggcgcttc
    20341 gtcttctttt aagttgttgt acatgatggt gcttttgata gtagattcat cgctatctgc
    20401 caaaaacaat cgcgcatcaa atggtgttcc gggttcatta gccccaagat gtccatttac
    20461 ccctaagcct agaatttgca aatcgcgctc attttcagcc aaaattttct tatagcgggc
    20521 aatttcgtca gtaaagtcag ctaggcttcc gtccaataat tcgactcttt ttggcatttt
    20581 gttaattaaa tcatagaatt tttggtgcat atatgtgtaa acagtgaagg aagcatcgcg
    20641 tttagccaca tactcatcca aattcattaa aaatactttt tcgattggaa tttcgcctgc
    20701 attaattcct tttacaagtc cctcgaacat tccatcaaaa cttgctccgg tagttgtatt
    20761 aattaccgga ttatcatttt cgttaatgac ttgtttgaca acttcgagcg cttcttgtga
    20821 catttcttcg tatgtttttg tcctgattaa tttcataaaa atcctcctct ataagctttc
    20881 attacccgaa ctattttttc taaagcaaac catgctttag aaaacttgcg tataacccat
    20941 cttcttcaac ggattttgtt acttcatctg caagtaattt tagctcttct ttggcattcc
    21001 ccattgcaat accagtttca caataagtaa gcatttctgc atcattcatt ccatcaccaa
    21061 tgccaatcgt cgtgttcttc tctgcaccga tatgcgttag tagaaattca atcgctgttg
    21121 ctttatgaat atctggcacc atcagctctc cactatcgtc cccaaaaata ggaactgtgc
    21181 aatgtaaaac ttcaaatttg ccactaaatt cattttttat ttcttcaaaa ggtacatttt
    21241 tattttctag gaaacaagct ttattgacat ctgtgcggta aagatttgtt tcaccgtaag
    21301 ttaggcttgt catgaaagga tgcggattat tggctttttt ctcgcgcgca atcggatcat
    21361 tctcgacatc gccataaact aagctatcta aatgagcttc tagattttcg cttgcaaata
    21421 gccccccgtt agactccaaa tagaaatcta agttcttttc atgaaagaaa tctaccatat
    21481 gaacaacgtc ttcattcgct acttttttat ggtaaacaat ttcatcgtct acttcgatat
    21541 agccaccacc tgcaccaata atcccatcaa acccgatgga taaaatcgag tcatacagct
    21601 ctggtttaga acgaccagtg catagataga cttggtgacc attgtttcta gcttttatta
    21661 tcgcggtttt ggcagatgct ggaacaagcc catcatccgt tacaagcgta ccatctacat
    21721 ctacaaatac tatttttttc gtcatgcaat acctcttttc gtatgttaat agtttaatta
    21781 tagcatttct ttaataagaa ggcgccccat cgcgtaacaa aaaagcaaga ttcccatttt
    21841 caggaaacct tgcttttaat ttgtttagtt ttctaaagcc attaattttt gattatcgtc
    21901 aagagctgat tcatgtgcat catggcgttt tttcaagtgg ctcatagata gatatagtaa
    21961 gccaacacat gcgatcatga tgattgtaag aacgagcatc gacatactgt atacatttgg
    22021 tcccatacct gctgccagtg actctctaaa cgcataaatc gagtaagtca ttggtaagaa
    22081 cggatggatt aaattgaaga accatccagt aagtggcatt gggaatgttc cgcctgatcc
    22141 cgctaattga acaatgagta ataccatcgc gataaaacga cctggattat caaatgtcat
    22201 agcaagaagc atgataagga acatgtaagc aagagctgta ataatcgctg ttccgaagaa
    22261 ttcaacaatg ctatctggtc ttagtcctag tgctatcatg ataccacctt caagaagtgc
    22321 catcgcaaca gctgcgacaa aaccaagtga tagtttactt aaccaccatt tataagctgg
    22381 ttgtccttcc atcgaaacac gtctgattgg catgatgaag ttaaatacaa gtgcaccaac
    22441 atatagagct agtgataaca catatggtgc taatgcatgt ccgtagttac ttacgtgcgt
    22501 atattcatta tgtgcgagtt ttgttggagc agcaatcatg ttaaatgttt tgtctgttgc
    22561 ttttgtatct ttgacttgtt gtgctccgtc tgctagtttg tctgttaatt ctgtgctgcc
    22621 gtctgttaat ttagtaagtc catctcctaa ttggaaggaa ccattcgcta atttggaaga
    22681 accatcggca attttggaag agccgtctgc tagttgtcct acgcctgaaa ctagttttgg
    22741 tgagttagct gatagttggt ttagaccgcc tgctaattgg cttgaacctg cttgtagttg
    22801 attaactcca cctgcaagtg ttggtacttt tgcagctaat tggtttgttc cgccttgtaa
    22861 ctctgttgcg cctgaacgta atgcgccgga attacttgca agttgattac caccatcatt
    22921 taactgactt aatccgtttt ccatatttgc actacccgca gcgagttgtc ctacgccaga
    22981 agttagggtt ggcacttggc tgttaagttg atttgttcca gcaactaatt tggcatttcc
    23041 agcttgtgct gatttgagtc cagcagttag ttggttcgcg ccgccaagta gagtttgact
    23101 acctgagcca ttaattgctt ggtgaatact gttaaaggct tcgtttgttc caccgtgaac
    23161 tgcttgataa ccagcggaaa ttttcgctac gccagtttgt aattctgtta cttgtgtttg
    23221 aattgccgct aaatcaagac ctgataagcc gctttgtagt tgttctactg ttgctacttg
    23281 tgtagcggat ttttgtgttt ctttatctaa atcggcttga atagcatcaa taattttttg
    23341 tttatcttct gcactcacgc cagctgtcgc attaattttt gatttaattg cttcagcatc
    23401 gaagttcgca ttagatttaa taaatgttaa gccattttgt aggtcgccta agcttttttg
    23461 taaggcagcg agttgttttg caagtgctgc atcttccccg ttgacacttt tatttaattg
    23521 atcaattcct tgttgtaaat cgttcatgcc ttgtttcaat tgggcaattt tgccttgttt
    23581 atcagttaaa ttaccgtcta attctttaag tcctgctgaa agtttgttac ttccatcgac
    23641 tagtgaatct aagccagttg ctaagctttt ttggccgtta tttagttgtg ttatgcccga
    23701 tgctagagtt ggtacactgc cattcatctt atttaatcca tctgaaagtg cagtagaacc
    23761 agtgtaagct tggttaattc cgcctgctag tgtatctaca ccagatgtat aggtagaaac
    23821 tccgctagct aatttcgttg ccccgccgtc aagcgctgct acaccgtctt ttagtggtcc
    23881 tactccagct gcaagtgtcg aaacaccatc atttaattta tccccaccag cggccgcagt
    23941 gtttacacca tctgtgtaag ttttcaagcc aacttctaac gtattagcgc catctttgaa
    24001 cgttaaagag ctatctgcga gcgtttttaa attagtagaa atcgttttat taccttcttg
    24061 tgatttcaca aggccatctt taatttttcc agagccatct gcagcttggg cgaacccttc
    24121 accagactct ttaattttat caaaaattgc ttccgcgtat gattttgtta cttcagcgga
    24181 aacctcgctt ttcagttgtt tggctccttg ttcactcacg acttgaccta aatagttcag
    24241 cgagccgttt gttttatagg ataattccat ttttttcgga tctttatcta aaacggatgc
    24301 tgcattttta gagaaatctt ttggaatcgt gacaatcata taatatttgc catcttttaa
    24361 gccttgttcc gcatcttctt tggaaagaaa attccaatca agttctttgt tgcttttcag
    24421 ttttgtgact aactgatcac caacatccat tgtttggccg ttataatcaa ccggtttatc
    24481 attgttaact accgctactg gtaaatcccc tgttttgccg tacggatccc agacggattt
    24541 taagaaaaag cttgcatata aaagtggaat aaacagaata actacaaatg ataaaagtag
    24601 tattttgttt ttaaataatt tcttccactc attttttacc atatccattt tattaccgca
    24661 cttctttctt ttaaagattt attacgcttc gttccaatct atgatagtgg ttcgttcttt
    24721 cccaataact tgctctacta aaacagataa tttttgtgag tataaataat tagcgtattc
    24781 tttatcagcg tttctaaaag cacttgtaat ggtgtgaata ccggactctg caaattcatg
    24841 atagtcagag aaaacagtgt ggattaagtc ggaatctggg tatgtatcga ttttcccttc
    24901 cactgcttct acaatatcca gcaaattaat ttcttcaggg tctttagcaa gcgtgaaacc
    24961 accgttatta cccgaaactg aattaatcag cccgctaacg actagcttcc tcaaaatttt
    25021 actaatataa gacggcgacg aatcacgcaa acggtgatga atagttacgg aagaaatggg
    25081 aacatctacc ttctgggtgt acaacatcgt cataatacaa aatacctgat ccatactttt
    25141 gctcaacttc ataataaaaa tcctccctct tcccattatt acctttcaat atccttaatg
    25201 gacatttaac atctatatac aatacaccca ttttttttaa agtgcaagag ttttttacta
    25261 aaaatggaaa aaaatttaat gaatacgttt gccgtgaata aaacaacctc aagtactgtc
    25321 tcaaaaattt tccttagcca agaaaaaaac tggaataatt ttcgaaaaca aacgtgctaa
    25381 tcttatacat gttccaacaa acaataactt aggaggtgct tttctcgtgt taactgatga
    25441 tgttccaaaa aaatcacatt taccattaat taagcatcat tctaattact tatagcttcg
    25501 tttagttgta ttttcgcaaa caaaaaattg ggaggtacta cacaatgtct aaacaagcaa
    25561 agtctttaac cttattcgga tttttcgcca ttacggcttc gatggttatg acagtttatg
    25621 aatatccaac atttgccact tccggctttc atctcgtatt tttcttgcta cttggcggat
    25681 ttttatggtt cttacctgtc gctttatgtg cagcagaaat ggcgacagtt gatggctggc
    25741 aagaaggcgg tattttttct tgggtgggaa atacactcgg ggaacgtttt ggttttgccg
    25801 caatcttctt tcagtggttt caaataacgg tcggattcgt gacaatgatt tactttattc
    25861 tcggcgcgct atcgtatgta tttgattttc ccgcgctcga atcgaaccct tttattaaat
    25921 ttatcggtgt tttaatcatt ttctggggac ttactttttc tcaactaggt ggtacgaaaa
    25981 acactgctaa aatcgcgaaa tttggtttta ttatcggtat tctcatccca gcaatcattt
    26041 tatttatcct aggtattgct tatgttgctg gcggaaatcc ccttcatgtc actttttcca
    26101 aagaggcgtt tatcccggat ttctcaaaag cttcaacatt agtcatcttc gtgtcattta
    26161 tactcgctta catgggtgtt gaagcttccg cgagccacgt aaatgaaatg accaatccaa
    26221 aacgcgatta tccactagcg atgattatgc tcgttatttt agccatcgca ctgaatacaa
    26281 tcggcggcct aaccatttcc gctgtgttac ctttaaaaga tttatccctt agctccggtg
    26341 tcgtccaaac attccaagca ttaattctgc actttggttc cggcttagga tgggcagtaa
    26401 aactgattgc catcatgatt gcacttggcg tcatgggtga agtcagtgcc tgggtagtcg
    26461 gcccctcacg cggaatgtat actgcagcag aacaaggctt acttccagaa aaaatgaaaa
    26521 aagtaaataa acacggtgtc cctgttccac ttattatggt tcaaggcgtc gtcgttacca
    26581 tttgggcagc tattctcaca ttcggcggcg gcggaaataa tttatcattc ctaactgcca
    26641 tttccttaac cgtagtcatt tatttagtcg gctatttact ctttttcatc ggctacttag
    26701 tacttatttt caaaaaatca agcttaaaac gcacctatca aatccctggt ggcaaaattg
    26761 ttaaagtgat tgtagcgcta atcggcttag taacatccgt tttcgcttta tgtatctctt
    26821 ttgttccacc agcatccatc gccgcaaaaa gcgacacgac atacatggtt atcttatcaa
    26881 tcagctttat cgtcaccgta ctaattccat ttatcatcta cgctgtgcac gataaaaaag
    26941 acatctcacc gaaagatatt acacatttag aatcaagcga catcaataaa ttcacccacc
    27001 caagagctcg tggcgaacac attattaacc ccgacgaaaa acatattatg aatcaagaca
    27061 aattatagga ggaaaaaatc atgttatata gtaaagaaaa taaagaaagt tatttagaac
    27121 cagttttcgg atcaagtgca gaggatcgtg atattcctaa atacaccctc ggaaaagaac
    27181 cactcgaacc tcggattgcc tatcgtttag taaaagacga acttttagat gaaggttctg
    27241 cccgtcaaaa cttagctact ttttgccaaa catatatgga agacgaagca accaaattaa
    27301 tgtccgaaac actagaaaaa aatgcaatcg ataaatctga atacccaaga acagctgaac
    27361 ttgaaaatcg ttgcgtcaat attatcgctg acttatggca tgcacctaag gaccaaaaat
    27421 tcatgggaac ttccacaatc ggctctagtg aagcgtgtat gctgggcgga atggcaatga
    27481 aatttgcttg gagaaaacgt gcggaaaaac ttggcttaga tatttatgcg caaaaaccaa
    27541 acctcgttat ctcctctggc taccaagtgt gctgggaaaa attctgtgtc tactgggata
    27601 tcgatatgcg cgttgttcca atggataaag atcacatgca actgaatacc gaccaagtcc
    27661 ttgattacgt cgacgaatat acaatcggcg ttgtcggcat cctcggcatc acttacacag
    27721 gccgctacga tgacatctac gcacttaacg aaaaattaga agaatacaat agcaaaacag
    27781 attataaagt ctacattcac gttgacgcag ctagtggtgg cttcttcact ccatttgtcg
    27841 aacccgatat tatctgggac ttccgcttga aaaacgttat ctccattaat acttctggtc
    27901 acaaatacgg cctcgtttat cctggtatcg gttgggtcct ttggaaagat gaaagctacc
    27961 taccagaaga acttattttt aaagtcagct accttggcgg agaaatgcca accatgcaaa
    28021 tcaatttctc ccgcagtgcg agccacatca tcggtcaata ctacaatttc ttacgctacg
    28081 gcttcgaagg ctaccgcacc attcatcaaa aaacaagcga tgtagcacaa taccttgccc
    28141 atgcagtcga acaaaccggc tactttgaca tttataacga cggctcccat ttaccaatcg
    28201 tctgctataa attaaaagac gacgctaacg taaaatggac attatatgat ttagcggacc
    28261 gcctccaaat gcgcggctgg caagttcccg catacccact accaaaaaac ttagaaaaca
    28321 tcatcatcca acgttacgtc tgccgcgctg acctcggttt caacatggca gaagaattca
    28381 tccaagattt ccaagcctct attcaagaac taaacaacgc tcacatcctc ttccatgata
    28441 cccaacaatc cggcgtccac ggcttcacac attaataaaa aggctagcct ctcaaatagg
    28501 ctagcctttt atcatgttct tttattctaa gcgactgaat cgccctttct acatctacaa
    28561 gatctctgtc aaaaaaagcc aaagaaatcg gaataatcat cccatctacc gcttccttca
    28621 attccatttc acagttcgga tggcaaagca caatcgttgg ctcacttgac tccgttaaaa
    28681 cctggttcaa ctcctccact gaattaaaca tcgtctcatg caccgtcacc ttccgcccca
    28741 gctcctgctc cacctgaaac ttacacgact cgaaattaat taaattaaag gaaaaaatac
    28801 aaatttgcac cggattgttc catttataaa tcagtggata caaatgaatc gtcaaataat
    28861 taatgtgcga atcaattaat aatactcgat attcactagc ctcattccag cgctccaaaa
    28921 catttttcac aaccatataa agtggctcat actttttatc cagtaatcgc tcattactcg
    28981 gaataagtcc ctgcaaatta aacaacgtct tcttcaaaaa gtaacaaagt gccgcccgaa
    29041 aaagcgaatg attaacaacc tccggaccaa aatattcctc aaataaatca atcaaaactt
    29101 gtaaatccgc atttttcatt atcaactcat taaactgctc caactccacc tttttcatgg
    29161 aagcatcaat gatactaaaa ttagtcgaat aataaatcag cattaaatac aagtaatcat
    29221 tatatgaaaa ttcctgacca agctcttttt caagtgtttc cttactactt ttccgaacca
    29281 tagcaagaaa gcttgaagac tcaatatatt tttgacactg ttcatccaat ataattgcac
    29341 tagtcggaat atccctctta aacaccatcg aaatcagcga ccgaaaatac gcatgacctt
    29401 ccgcattatg cgccaacgta tcaatattaa tccgcaaatt caacgtcgcc ataaagtcat
    29461 caatcatttg cttctcctca tccaaaagtg gataaataag cacaccatat tctgcttgaa
    29521 gaagcgcaat caaataccga accctgtatt ccttcccagt aattcgatta ttatcaagtg
    29581 tcaaatcaat ttctcgaaga aacgcttcta ccttgtgctt caaccgatac gcatgcgaat
    29641 gagaaataaa atacgtatcc ataaaatctg tgaatttgcg ctcctccaca ttcgtaacaa
    29701 aaaacgccac acatttcaaa aacattgagt tatcatataa cttatacaaa actttccgtt
    29761 ccgtcgcccc attttgcaac cgacattggt atacccaatt atccacacat tctttcatct
    29821 gaataacaat caagccatcc aattcctcat tcaacgcatg aatatccgac cttaccgtca
    29881 cccgagaagt ctccatatat tccgcaattt catctaaatt cgtatgttta ttctttagta
    29941 gaaaatcaca aatcaaacat tttcttttaa tatccttttc gatataattt gtaagcataa
    30001 ctatcctctc cgtgaaagat taatacacaa c
//
LOCUS       DABQVC010000007        29510 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.007,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000007 DABQVC010000000
VERSION     DABQVC010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 29510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29510
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.007"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(201..1301)
                     /gene="ychF"
                     /locus_tag="IBJ56_000223"
     CDS             complement(201..1301)
                     /gene="ychF"
                     /locus_tag="IBJ56_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HAM3416508.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGIV
                     EVPDHRLNKLTELVKPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICH
                     VTRCFDDENITHVEGRVDPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAVA
                     EYNVLVKLREAFENDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDD
                     NKYVQQVREFAASENSEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSA
                     YTLLGLATYFTAGVQEVRAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYG
                     SEQAAKEAGKVRLEGKEYEMKDGDVVHFRFNV"
     gene            complement(1452..1760)
                     /locus_tag="IBJ56_000224"
     CDS             complement(1452..1760)
                     /locus_tag="IBJ56_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HAM3416509.1"
                     /translation="MEGMELASFQIISSVGAARSCIIEAMKFGRQRKFTEAYKKIDEA
                     NEFLSEGHKNHVQLIQKEADGGDVQISILFMHAEDQFMTTYTLRDVAYEMIAIWKEMK
                     "
     gene            complement(1766..4036)
                     /locus_tag="IBJ56_000225"
     CDS             complement(1766..4036)
                     /locus_tag="IBJ56_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase"
                     /protein_id="HAM3416510.1"
                     /translation="MAVYLDKEKPVSERVEDLLSKMTLAEKCGQLNQRMYGWEAFSRD
                     GETFHITEKFKEEVTRFEGIGALYGLFRADPWSKMNKDTGVSRKNAGKVANKIQRYVI
                     ENTRLGIPVLLAEEVPHGHQALDSESYPVNLARAASFNPELQKQVASAITEEISEKGV
                     HLALASALDILRDPRWGRAEECYGEDPYLAAELTAAITEGFQASGKIAVILKHFAAQG
                     EPIGGHNSGPVSIGVRELREIFLEPMRAGIRSGALGVMAAYNEIDGVPCHANKELLTT
                     ILREEMGFSGIVMADGCALDRLLKLNPDPKKAAKMALEAGVDLSLWDEVFPFLEESVE
                     KGILDEKVVDDAVRRVLQVKFQLGLFEQPFVEEEIQAPKSDWKQLNLQAAREGICLLK
                     NDFETLPLVGERKKIAVVGPSIDALYNQLGDYTAPQNESECVTVLEGIKKLLPKNWEV
                     VSEKGTEIREELPDGIQRAEVVAKEADAIVMVLGGSSARNFDMEFLNNGAVSSKGPNM
                     DAGENVDVADITLPQPQLDLFYAMKRTGKPVIVVMIQGRPIAIPEISSTADAILTAWY
                     PGSVGGTAIAEVLFGHYNPSGKLPVSIPRSSGQIPIYYNQKAVEYKEDYFDLTGKPLY
                     PFGYGLSYSTFEYQDLQIKQESIKIAELLGGQSVEVKVTLKNTSNVAGEEVVQLYLHD
                     MEASITRRKKELKAFKKVRIAAKQTATVTFKLDKSSFEIWSINNKYEVEPGGIEIFVG
                     GSSDTKLTGRVSIIGG"
     gene            complement(4071..4370)
                     /locus_tag="IBJ56_000226"
     CDS             complement(4071..4370)
                     /locus_tag="IBJ56_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3416511.1"
                     /translation="MKNIMLMCNAGMSTSVLVRKMERVVEERNLELTIWAISETDFEK
                     NWRKADAILLGPQVNYMKDKVIETVGDNVSVAVIDIVDYGRMNGEKVLDLAISLL"
     gene            complement(4385..5680)
                     /locus_tag="IBJ56_000227"
     CDS             complement(4385..5680)
                     /locus_tag="IBJ56_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3416512.1"
                     /translation="MKKFIEKLSWLSQKLGNQIHLKSMRDAFATILPFIMLAGFMVLI
                     NNVIIKPDGFMSAIISSETLTTWQGLGNSIVNGTLGIITILIGASVAYFLAQNRKFEN
                     PFAPALMTIALIVIFIPAVTEIVPIGAEKSVEVAGVLPIALMGSAGMFVGIVTALLAT
                     EVFIRLSKSEKMKIHISGDSVPPAVIKSFNVLIPTMLTILIFAFISFLVVTLFSLNLY
                     SLISAIIQEPLTFLVTSVPGFLTLMTISQMLYSIGIAGSGILGPIMDPVLLANMQENM
                     TAFANHTEIPHIINTTFRDVFGVMGGGGNTIALLIAIFIWSKRKDYREIATLSAAPGL
                     FNINEPVVFGLPIVYNLSLMIPFIISTPLCLCLAYFATKLHMISEVVVMVPWTTPVVA
                     SGFLATGGDWRAAVFQIFLIGVCVLLYLPFLKANDRIKA"
     gene            complement(5830..7746)
                     /locus_tag="IBJ56_000228"
     CDS             complement(5830..7746)
                     /locus_tag="IBJ56_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3416513.1"
                     /translation="MSASKLSLPRWKQIVHMLYLKMEFISGGELGEALAVNPRTIRND
                     IKVINQILMIGGNRIESLPGVGYRLVIGDEKALREALLDDSIGRANMNIVPMFAEDRA
                     DYIIRYLLLKNDYVKLETLSEELFVSKSTINLDILEVKRKLKENELKVEKRAGYGIRI
                     TGAELAIRFCFSRYLLVESTSPLITETEINFFGEVNLEMMEQIVVSNIAKYNIHMTDI
                     SVKNLIIHIAIAVCRVKDNCYVPATDLEDIEFSMPELRAAQGIIKEIDLSEGIRFPES
                     ETAYLLLHLSSKNRKSDFNNYREYIIVDKMLEKIKELYGYDFKQDQKMISNIALHLKP
                     AINRIKFNMNIQNPYLKNLKANYPLAFELGLVAKEVLEQELKTNVDEAEVGYLAIHFL
                     YGLDKEIGSEKQKVLIVCASGLGTSQLLESKVRKEFENTLEIVGVYSFKEYEQSGTAC
                     DFVISTVPLRMKLHPFIQVSPFLTKADIRNITALMKQDETKNQFEVDKVFKESLFLIS
                     DKKDKEQVLVDLASLLLENNIVGEDYLPSLFEREEIVPTYLGNGLAAPHPIEANVQET
                     AIGVCIFTGGGVKWNEEDQAQVIFMLAVKNKQQQQLATVYELISNLVESPKAMGELKR
                     VTSFEEFMRVLQTI"
     gene            complement(7957..9423)
                     /locus_tag="IBJ56_000229"
     CDS             complement(7957..9423)
                     /locus_tag="IBJ56_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HAM3416514.1"
                     /translation="MTDRKNLTTNQGVPVGDNQNSMTAGRKGPTLIEDYVLIEKLAHF
                     DRERVPERVVHARGAGAHGKFVTKKSMKKYTMAKFLQEEGTETEVFARFSTVIHGQHS
                     PETLRDPRGFSVKFYTEEGNYDFVGNNLPVFFIRDAIKFPDVIHSLKPDPRTNIQDGN
                     RYWDFFSLTPEATTMIMYLFSDEGTPASYREIRGSSVHAFKWINEEGKTVYVKLRWIP
                     KAGIVNLSTEQASQIQAKEFNHASRDLYEAIENGDYPEWDLYVQVLDPKDLDNFDFNP
                     LDATKDWFEDVFPYEHVGTMTLDRNPDNIFAETESVGFNPGVLVRGMLPSEDRLLQGR
                     LFSYSDTQRHRVGPNYLQLPINSPKAPVANNQRDGHMPFKQQTSSINYEPNSYDTEPK
                     ENPAFIEPEQEIRGDISGRLIAEKPNNFGHAKEVWDRYSDAERAALVKNIVDDWSQVR
                     DDIKIRNLRNFYQVDPEFASRVAAGTGVNLEAHVADLK"
     gene            complement(9572..9775)
                     /locus_tag="IBJ56_000230"
     CDS             complement(9572..9775)
                     /locus_tag="IBJ56_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HAM3416515.1"
                     /translation="MFMEKKHFDLNDIVEMKKPHPCGTNRFKIIRMGMDIRIKCEGCG
                     HSVMIPRREFERKVKKILVKAEQ"
     gene            complement(9782..10633)
                     /locus_tag="IBJ56_000231"
     CDS             complement(9782..10633)
                     /locus_tag="IBJ56_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HAM3416516.1"
                     /translation="MAKGLGKGINALFNNVDTNEETVQNIAIKDIKPNPYQPRKIFDT
                     KAINELRDSIKIHGVLQPIILRNTDKGYEIVVGERRFRAAKEAKLKEIPAVVRDLTEE
                     EMMELSVIENLQREDLSPLEEAESYQFLMKKLGLTQAKLAERVGKSRPYIANFVRLLT
                     LPEEVQVMLRDGSLSAGHGRVLLGLKLKKNIIPTAKKAVAQGLTVRQLEDVVNNLNEN
                     VSRETIKPARVPIFIRESESQLRDKFGTAVSIKRRDKKGKIEIEFLSDDDLDRILEIL
                     DIQFDDE"
     gene            complement(10626..11387)
                     /locus_tag="IBJ56_000232"
     CDS             complement(10626..11387)
                     /locus_tag="IBJ56_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HAM3416517.1"
                     /translation="MSKVIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDIDPQGN
                     ASSGVGVNKGEIEHCIYDVLVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAI
                     SREIRLKKAIDSIRDDYDYVIIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQ
                     LLNTIRIVQKHLNEDLQIEGVLLTMLDARTNLGIQVIEEVKKYFQNKVFNTIIPRNVR
                     LSEAPSHGKPILLYDAKSKGAEVYLELAKEVVAHG"
     gene            complement(11612..12370)
                     /locus_tag="IBJ56_000233"
     CDS             complement(11612..12370)
                     /locus_tag="IBJ56_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3416518.1"
                     /translation="MIHSTLSGITKRMAKIIFVKDEQNEFQAYDFLQNLIVEEPLMAT
                     LVFQGLLQLETAETRKLSTGKQILPDVHLIIGKSQAYSLQTTRVETTVDQPIQEMKAH
                     FKDKNCRLIYFTAFSGDETYYCFVKGYFKDKNPFTDQMSAYREEVKRVFLRRIEAETS
                     IGHADYQFETLKNKALANEGIAHYLDSFSASLGKYIFSKRMEKKWSQLDLALKSDLSP
                     VIIGRLEAGDPDLTLRMYQKVCTVLGVKTTFSVD"
     gene            complement(12529..12828)
                     /locus_tag="IBJ56_000234"
     CDS             complement(12529..12828)
                     /locus_tag="IBJ56_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416519.1"
                     /translation="MRFLKIIGHAVGVISCLMVLPSFVIAITSAILSFNPLYITYFFT
                     SPYARAVAVAEESGWGSGFNILLINYGAYLIAFGYTFFAIVKIYSWYQIAKEAKK"
     gene            complement(12840..13694)
                     /gene="noc"
                     /locus_tag="IBJ56_000235"
     CDS             complement(12840..13694)
                     /gene="noc"
                     /locus_tag="IBJ56_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion protein"
                     /protein_id="HAM3416520.1"
                     /translation="MPFSRLFGKKEKNQMDDIVEEGVQRVQELPMDKIFPNQFQPRTV
                     FDQDKIDELARTIRIHGVIQPIVVREMEPDYYEIIAGERRFRAVLSLEMEKIPAIIQN
                     LDDEEVAAIALIENLQREELTPIEEAKAYRSLLDMQDVTQEALAQRVGKSQSAIANKM
                     RLLKLPETVQEAVLNKQISERHARSLLALETEEQQVAILAEIAENHWNVKQTEARIQE
                     ILGVKKPVATKKTKPKRQAISRDVRIAMNTIKQSVTMVKDNGMDLDFTEEETDDFYQI
                     TIQIPKKK"
     gene            complement(13866..14672)
                     /locus_tag="IBJ56_000236"
     CDS             complement(13866..14672)
                     /locus_tag="IBJ56_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAM3416521.1"
                     /translation="MTILNEIQQNYNQLPNKEKQIAKYILEKSDELKNINIKELAEET
                     GTSISTITRFCRHVRCDSFVDLKMRVNTAATMVPSLGYDDLFEEVYSFYHKVIDNTVK
                     LIEPAKIREVVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIIT
                     SSITTKEDFVIGISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVY
                     NTLFVSKRYFANSQFSIMYVMDIISMMLLQNESYRDNMEKTINTVTDEFH"
     gene            complement(14656..15561)
                     /locus_tag="IBJ56_000237"
     CDS             complement(14656..15561)
                     /locus_tag="IBJ56_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAM3416522.1"
                     /translation="MENYLCVDIGGTSIKYAKFNQEGKRVGDLKSCVTPITGGANQIM
                     PALIRIVEQEKTNVAGVCVASAGVVDSVKGKIIYAGYTIPKYTGTEIKAELEHRFHIP
                     CVVENDVNAACLGEFWLGGARGRGSVLCLTIGTGIGGAMLLNDKLINGSSFTACEVGY
                     MHLSQGRFQDVASTKALIKQVASRKNIEENALNGRQVMEWAYSGDADVLAEIEQWIEN
                     LVEGVVNLIYIFNPEVIVLGGGLMEEESFFKPRLKAAISTKLISPMFDTADITFAKLG
                     NEAGMIGALYHFLNQKEAEKDDDFK"
     gene            complement(15586..16032)
                     /locus_tag="IBJ56_000238"
     CDS             complement(15586..16032)
                     /locus_tag="IBJ56_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3416523.1"
                     /translation="MLLDRVTLEDIEVNLKAKDWREAIQTSARLLLERGAIKESYIDG
                     MIQSVENNGPYIVIAKHIALAHTRPEFGVIRGGLTFATLADGVAFGSDMFDPVKLVIT
                     LAATDSESHLEVLSELAEVLMDEEKVTRLIEANSSQAFYDELTKEG"
     gene            complement(16045..16701)
                     /locus_tag="IBJ56_000239"
     CDS             complement(16045..16701)
                     /locus_tag="IBJ56_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HAM3416524.1"
                     /translation="MLKAIVMDFDGIVIDTEVVWYEIFKEWFKTKQNYDLSIEEFLQC
                     VGSNVDDLFRELNRTEQMDINRQDFEAETQATFIENSKSLPAKEGVESFIRELKERGL
                     KLALATSSQRPKPLYHLERLGLLGYFDAIITAEDVTRIKPDPDLFLEALRALDVKPSE
                     ALIVEDSRNGLLAGNSAGVNVLVIPNEVTKHSDLTPNYLERESLAEVDLTEIMAEYNK
                     "
     gene            complement(16764..18170)
                     /locus_tag="IBJ56_000240"
     CDS             complement(16764..18170)
                     /locus_tag="IBJ56_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HAM3416525.1"
                     /translation="MSIRVHVQKFGSKLSGMVIPNLGAFMAWGILTAIGVATGSEMLK
                     GFIAPMLNYLLPLLIAFAGGRAVHGYRGGVIGTVATMGAIISSDITMFIGAMIMGPLA
                     AWVLKKFDERIDGKIPAGFELLVNNFSIGIIGAGLALFSYVAIAPMVEAVTKVLASGV
                     DVLINNHLLPLTALIIEPAKVLFLNNAIGQGILSPLATLQLAETGKSVLYLLESNPGP
                     GLGILLGYMFFGKGNSKASSYGASVIHLFGGIHEIYFPFVLMNPILILPLILGGMTGT
                     FILTMTNAGLVGVASPGSIITIMMMAAPGDHIKILIAVLCAALVTFITAIPFIKRMGN
                     KDSELQDAAKKMESLKGKKSSISSVFEATVDDFNFKNVKRIAYACDAGLGSSAMGATV
                     LQKKIKNAGLEDIKVFHIAIHELPTECDVVVTHKSLIDRAKEKQPDAYYVEITDYLGA
                     PEYQELIDKIVADREQKN"
     gene            complement(18204..19205)
                     /locus_tag="IBJ56_000241"
     CDS             complement(18204..19205)
                     /locus_tag="IBJ56_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAM3416526.1"
                     /translation="MTKQIKVGVIGVGQMGQYHAEIYQKLPQVELVAICEYNDERRAE
                     MAEKFQCKAYKDYHELLANTEIEAVSIVLPDNMHRDCVEEAVKYKKHILLEKPLAKEL
                     EDGKAMYELTKDYDKVFTVGFLLRFDPRFNMIKQRLDNGELGDIIHLYCRRNSPITGP
                     KRYIGASDLSMHVMIHDIDYINWYMDSEPVKVIAKSRSVLLKEYGMNDVIYAIVTYEN
                     GAIACLEACWVLPENSPTIIDDKLELVGTKGVAYVDSCDHGVRFVSEKGVSYPDSRHW
                     YYTNGEVSGDLAEEVMAFINNVANNTKSIITPKEAYDSLRVVDAIERSIAEGKEVSL"
     gene            complement(19225..19920)
                     /locus_tag="IBJ56_000242"
     CDS             complement(19225..19920)
                     /locus_tag="IBJ56_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HAM3416527.1"
                     /translation="MGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAV
                     GIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLEEVREICETGVEIVAMDA
                     TTRKRPHNEDLKDILSAIRKEFPNTLFMADTGSIEDVYYADSLGFDLIGTTLYGYTEE
                     TANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQ
                     EITTRFTNEIKKI"
     gene            complement(20122..20838)
                     /gene="rsmG"
                     /locus_tag="IBJ56_000243"
     CDS             complement(20122..20838)
                     /gene="rsmG"
                     /locus_tag="IBJ56_000243"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HAM3416528.1"
                     /translation="MNPEQFQTALAEKGIELSDTQLKQFHDYFEMLVEWNEKMNLTAI
                     TDEKEVYLKHFYDSISAAFYVDFTKFDTICDVGAGAGFPSLPIKICFPHLKVSIVDSL
                     KKRMTFLDALAEKLGLTDVHFYHDRAETFGQNKAHREKYDLVTARAVARMSVLSELCM
                     PLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFSFSLPVEESERNIYVITKT
                     KETPNKYPRKPGTPNKLPIE"
     gene            complement(20991..21257)
                     /locus_tag="IBJ56_000244"
     CDS             complement(20991..21257)
                     /locus_tag="IBJ56_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416529.1"
                     /translation="MIDKLKAELLESRRNLEKNLIGMFVASQTHATSENRKRMFKMIK
                     RDKIADIKSNCQGYIDGLSTTAEGKWVNQAKKSFKENANKFDNC"
     gene            complement(21259..21624)
                     /locus_tag="IBJ56_000245"
     CDS             complement(21259..21624)
                     /locus_tag="IBJ56_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416530.1"
                     /translation="MDKQRQLLLKLENLDDDFNRKRRQLDEAMDDASQEKWRFHQELE
                     NLSEQIRYIHQKRDYEASEDLQKAYHLISSIQEEGDWKVKNTLTKLENEHEEHQALYK
                     KQVNSYEEELHQLKKDRDL"
     gene            complement(21617..22897)
                     /locus_tag="IBJ56_000246"
     CDS             complement(21617..22897)
                     /locus_tag="IBJ56_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HAM3416531.1"
                     /translation="MGHVNTDQERVELAKKEYSKLELKQEVNISISNREKKIGNVSQT
                     INNKAAGQQTYIITEKYTPPTASHIERSKVKEVTVLYRGSTAPTLASGLTPFHKDSLD
                     VWTDWGVNDIPTAIQITNGGGSTVTPQLKTSAETLKQTMKLYPNAQIYVYGHSLGSMN
                     AQYAIADLDKKDIKRISGGFFYQGPNIYSNLTPKQQDTVKAINALDRLFNFIDRKDYV
                     PIGYGIGDPTIGHLIEVESKKAGMVEQHMWGGYQFDKEGNILTNKEGSLQLAKYVTAQ
                     QLAAINIMRTSFTKSGGGLSSSEEIFLDAAEALAITQGMKQTIQGEIRALKDVFDKEI
                     ENAEELWRDTLSDARDIGSNLYESEILAALAWGGATEPEIVIDTVQDCEKSLVEATKI
                     EQEYDKLLERINEAIKSQLKTDQELAKQIGSMYG"
     gene            complement(22903..23289)
                     /locus_tag="IBJ56_000247"
     CDS             complement(22903..23289)
                     /locus_tag="IBJ56_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003772763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
                     /protein_id="HAM3416532.1"
                     /translation="MKKRWIIALAIIVITIFGLGVKFYMDEEKLNKEMMNVVYSDEAK
                     QVFEKRLTNLDPNAFTEKGIIHSYKIEEGSVEHNPMGGIEVGLIINNDSELNVSYTLS
                     KNNGELSGGASVVSEKLSKLLGRWEE"
     gene            complement(23417..23803)
                     /locus_tag="IBJ56_000248"
     CDS             complement(23417..23803)
                     /locus_tag="IBJ56_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010959104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
                     /protein_id="HAM3416533.1"
                     /translation="MKKRWIIVLGITVITIFGLGVKFYMDEEKLNKEMMNVVYSDEAK
                     QVFEKRLTNLDAKAFTKEGIIQSYEINKESIERNPMRGINVTLIINKDLEWYITYTLG
                     KQNDKLDGGGASISKELTKKLELKGS"
     gene            complement(23915..24307)
                     /locus_tag="IBJ56_000249"
     CDS             complement(23915..24307)
                     /locus_tag="IBJ56_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
                     /protein_id="HAM3416534.1"
                     /translation="MKKRWIILFGIAIMIIFGLGIKFYMDEEKLNTEMMNVVCSNEAK
                     EVFNDDIKLIDTKAFTKEGLIQSYEVDKESIEPNPMGGIIVALVINKDPALKLTYTLK
                     KNNEDLKSGGASISKELTKQLGLLNGYK"
     gene            complement(24332..24712)
                     /locus_tag="IBJ56_000250"
     CDS             complement(24332..24712)
                     /locus_tag="IBJ56_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
                     /protein_id="HAM3416535.1"
                     /translation="MKKRWFIAMVVVVMIVAGLGVKFYMDEEKLNKEMINVVYSDEAK
                     RVFENGLKNLDAKALTGKGVINTYEIDKKSIKQNPMGGINVTLHVNGDSELYVFFTLN
                     KADDKKLIDDGGGNSAKLGKLLDN"
     gene            complement(24871..26760)
                     /gene="mnmG"
                     /locus_tag="IBJ56_000251"
     CDS             complement(24871..26760)
                     /gene="mnmG"
                     /locus_tag="IBJ56_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HAM3416536.1"
                     /translation="MQTYDAGTFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMV
                     AFMPCNPSVGGPAKGVVVREIDALGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQAD
                     KWDYQHEMKHTIEKEENITLRQGLVDRLVIEDGVCKGVITNSGAIYYAKTVVITTGTF
                     SRGEIIVGELRYSSGPNNQQPSVKLSEHLEELGFELRRFKTGTPPRVKSSTIDYSKTE
                     EQPGDDHPRAFSFDTVEMLLDQLPCWLTYTNETTHEIIQANLHRSPMFTATKKGTGAR
                     YCPSIEDKIVRFSDKPRHQIFLEPEGKNTEEVYVQGLSTSLPEEVQREMLRTIPGLEN
                     VEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLFTAGQINGTSGYEEAAGQGLMAGINA
                     ARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPYRLLTSRAEYRLLLRHDNADLRLT
                     EIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIKPTAEVQAMLKEIGSGELKDGI
                     LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQIKYEGYIQKSNLQVEKMKRME
                     DKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGVNPADISILLVYIEQGKI
                     AKISK"
     gene            complement(26785..28158)
                     /gene="mnmE"
                     /locus_tag="IBJ56_000252"
     CDS             complement(26785..28158)
                     /gene="mnmE"
                     /locus_tag="IBJ56_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HAM3416537.1"
                     /translation="MEFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSE
                     AESHTIHYGHIKEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR
                     NGANLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRN
                     LRQEILDALAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILRE
                     GLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG
                     IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNK
                     TDLETKLDINRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSN
                     VRHIALLHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLF
                     NQFCLGK"
     gene            28516..29334
                     /locus_tag="IBJ56_000253"
     CDS             28516..29334
                     /locus_tag="IBJ56_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HAM3416538.1"
                     /translation="MKIHKLTWVLLMGLLLLSSCSTKQPNLYLSANAAAVYSVENGEP
                     LYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQK
                     RTWSVRDLYSAMLTMSANDAAETLGDRLDGANFPKEMNNQAKKLGMSSKTTFVSASGL
                     DVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGL
                     DGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGFKEN"
     gene            complement(29389..>29510)
                     /locus_tag="IBJ56_000254"
     CDS             complement(29389..>29510)
                     /locus_tag="IBJ56_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4918 family protein"
                     /protein_id="HAM3416539.1"
                     /translation="EEHHFFDTIIPLEHPRFIMQYNSKNKDVYMEKYLCALKS"
BASE COUNT         8136 a         6445 c         4923 g        10006 t
ORIGIN      
        1 aaaatcgctt aattgattgt ttgtttcacg tgaaacatat ttattattat tttcactttc
       61 tatattaaaa gtataaatct gttcaaaaat tagcttaata ctcttttgaa gtatatcagt
      121 aacgcagaat ttatgaacta acctaaaaaa caatcttttg acatacttac ttgtcaaaag
      181 attgtttcac gtgaaacata ttaaacgtta aagcggaaat gaacaacatc tccatctttc
      241 atttcgtatt ctttaccttc caagcgtact tttcccgctt ctttggctgc ttgctctgag
      301 ccgtattcaa gtaaagcgtc atatgcaaca acttcagcgc gaatgaatcc acgttcgaaa
      361 tcagtatgaa tgattccggc acattgtgga gctttcatac ctttgatgaa ggtccaagcg
      421 cgaacttctt gaacgcctgc tgtgaagtaa gtcgctaagc caagcaatgt atacgcagaa
      481 cgaatcaatt ggtctaaacc agattcttca attccaagcg cttctaaaaa ctctagctta
      541 tcttcgtctt caagttcagc aatttcttcc tcagcgcgag cacatactac gataacttca
      601 gagttctcgc tcgcagcgaa ttcgcgtact tgctgtacat atttgttatc gtccggacta
      661 gaaacatctt cttcacttac atttgctaca tataaaactg gttttcttgt aagtaagaaa
      721 aggttgcgaa cgattttctc ttcttcttcg ttaaattcaa tcgcacgagc tggtttgtca
      781 ttttcgaaag cctcacgtag tttaactaaa acgttatatt cagccacagc atctttatct
      841 ttttgtttag atagcttctc aacgcgtcca atgcgcttct ctactgtttc taagtccgct
      901 aagataagtt ctaagttgat tgtagaaata tcgtctagcg ggtctactcg gccttctacg
      961 tgggtgatat tttcgtcatc aaaacaacga gttacatggc atattgcatc cacttgacga
     1021 atatgggata agaatttgtt tccaagtcct tcccctttac tagcaccttt tacaattccg
     1081 gcgatatctg taaattcaaa agttgttgga acggtctttt tcggttttac aagttccgtt
     1141 agtttgttta atctgtggtc aggaacttca acaattccta cgttcgggtc aatcgtcgca
     1201 aacggataat tcgcagcctc tgctcctgct tttgtgattg cattaaaaag tgtcgatttc
     1261 ccaacattag gaagcccgac aataccagct gtaagtgcca ttatatataa actccttttc
     1321 attaacttca ttttgaaaat gcctgtcaaa tagacatttt ttcactaacg tatattataa
     1381 aggtttttca aacaaaaagc cacccaccaa aaaacgaaaa ccctttaatc agtaaaggat
     1441 tttcgtttta attacttcat ctctttccaa atagcaatca tctcataagc tacatcgcgt
     1501 aatgtataag ttgtcataaa ttgatcttcc gcgtgcatga agaggataga aatttgtacg
     1561 tctccgccat ctgcctcttt ttgaattagt tgcacatgat ttttatgacc ttcgctaaga
     1621 aattcattag cctcgtcaat ttttttatat gcttctgtga attttctttg tcttccgaat
     1681 ttcatcgcct caataatgca acttcttgcg gcgccaacag aactaattat ttgaaatgat
     1741 gcgagttcca ttccttccat tttcgctagc ctcctatgat tgaaactcgc cctgttaatt
     1801 tagtatcaga acttccacca acgaaaattt ctataccacc gggctccacc tcatatttat
     1861 tgttaattga ccatatttca aaacttgatt tatctagctt aaatgtcact gtagctgttt
     1921 gtttcgctgc aatacgaacc tttttaaatg cttttaattc tttttttctt ctagtaatac
     1981 ttgcttccat atcatgaaga taaagttgca caacttcttc accggctaca ttagaggtgt
     2041 tttttaaagt tactttcact tctacagatt gcccgccaag gagttctgct atttttatag
     2101 attcttgttt tatctgtaaa tcttgatatt caaaagtgct ataacttaaa ccataaccaa
     2161 atggatagag cggcttacca gttaaatcaa agtagtcttc tttatactcc actgcctttt
     2221 gattgtagta aataggaatc tgcccggagg atcttggtat gctgactggt aatttacctg
     2281 aaggattgta atgaccgaaa agaacctcag caatcgccgt tccaccaaca cttcctggat
     2341 accaagctgt gagaatcgca tccgctgtcg aactaatttc tgggatagcg attggtctac
     2401 cttgaatcat tacgacaatt acaggctttc cagtacgctt cattgcgtaa aacaaatcta
     2461 attgcggttg tggaagcgtg atatcagcaa catccacatt ttcaccggca tccatgttcg
     2521 ggcccttaga gcttaccgcg ccattattta aaaattccat gtcaaaattc cgcgcacttg
     2581 aaccaccgag caccataaca atggcgtctg cctctttagc aaccacttct gctctttgaa
     2641 tgccatccgg aagctcttca cgaatttcag tacctttttc agaaacgact tcccaatttt
     2701 taggaagcag tttttttatc ccttctaaca cagtgacaca ttctgattca ttttgcggag
     2761 ctgtataatc tcccaactga ttataaagcg catctatgct aggaccaaca acagctattt
     2821 ttttccgttc gcctactaga ggtaatgttt cgaagtcgtt tttcaaaaga caaataccct
     2881 ctctagcggc ttgtaaattt agttgtttcc aatcagactt cggtgcttga atttcttctt
     2941 ctacaaacgg ttgttcaaat agccctaatt ggaatttcac ttgaagcact cgcctcacag
     3001 catcatcaac gaccttttca tcaaggatgc ctttttccac gctttcttca agaaatggaa
     3061 acacttcatc ccacaaactc aaatccacac cggcttcaag agccattttt gcggcttttt
     3121 ttggatcagg atttagtttt aataatctat caagggcaca cccatctgcc ataacaatcc
     3181 cggagaatcc catttcttct cgcaaaatag ttgttaaaag ctctttgttc gcgtggcatg
     3241 gcaccccgtc aatctcgttg taagctgcca tgacgccaag agcaccactt ctaattcccg
     3301 cgcgcattgg ttccaagaaa atttctctaa gttcccttac gccaatagaa actggtccag
     3361 aattatgccc gccaatcggc tcgccttgtg ccgcaaaatg ttttaaaata acagcaatct
     3421 tcccactcgc ttgaaagcct tctgtaattg ccgctgttaa ttccgctgca aggtatggat
     3481 cttcaccgta acactcttca gcgcgtcccc aacgtgggtc tcgaagtatg tctaatgctg
     3541 aagcaagtgc tagatgaact cccttttcgg aaatttcttc tgtaatcgca cttgcgacct
     3601 gtttttgcaa ctctggatta aaagaagcag cacgagctaa atttaccgga taagattcgc
     3661 tatctaacgc ttggtgaccg tgcggaactt cctcagctaa tagtacagga atccctaggc
     3721 gcgtattttc tatcacatag cgttgaattt tattagctac tttgccagca tttttccgac
     3781 ttacacccgt gtccttattc attttggacc atggatcagc gcggaacaga ccgtataaag
     3841 cgcctatacc ttcaaatcta gttacttcct ctttaaattt ttccgtgata tgaaacgttt
     3901 cgccatctct tgaaaaagct tcccagccat acattctttg gtttagttga ccacattttt
     3961 ctgctaaggt catcttggaa agtaagtctt ctacacgttc tgaaactggt ttctccttat
     4021 ccaaataaac agccatattc tttctcctcc ttgctaaaaa actaagaatg tcacaataaa
     4081 ctaattgcta aatctaatac tttttcacca ttcattcgac cataatcaac gatatcaata
     4141 actgccaccg atacattatc accaactgtt tctataacct tatctttcat ataattcact
     4201 tgcggtccaa gtaaaatcgc atcagcttta cgccaatttt tttcgaaatc cgtttctgaa
     4261 atagcccaga tagtcagttc taaattacgt tcttctacaa cgcgttccat tttcctcact
     4321 aaaacgcttg tagacattcc cgcattacac atcaacataa tatttttcat aaaaatccct
     4381 ccaattaggc tttaattctg tcattggctt ttaagaatgg taggtaaaga agtacgcaga
     4441 cgccaatcaa gaaaatttgg aatactgcag cacgccagtc cccacctgtt gcaaggaagc
     4501 cggaagcaac aactggtgtc gtccacggaa ccattacgac tacttctgaa atcatatgca
     4561 gctttgtcgc gaagtaggct aaacataagc aaagcggtgt tgaaataatg aacggaatca
     4621 tcaaactcaa gttataaaca atcggaaggc caaatactac cggttcattg atattaaata
     4681 gaccaggagc tgccgataaa gtagctattt cgcgataatc ttttcgtttt gaccaaataa
     4741 aaattgctat taacagcgca atagtatttc cgccgccgcc cataacgcca aaaacatcac
     4801 ggaaagtagt attaataata tgcggaatct ctgtgtgatt cgcaaatgct gtcatatttt
     4861 cttgcatatt tgccaaaaga actgggtcca taatcggccc taaaatccca cttccagcaa
     4921 taccgataga ataaagcatt tgtgaaatcg tcattaacgt taggaaccct ggaacacttg
     4981 taactaagaa tgttaatggt tcttgaataa ttgcgctaat taaagaatac aaattcaagc
     5041 tgaataatgt cactactaag aatgaaataa acgcaaaaat aagtattgtt aacattgtcg
     5101 gaataagcac attgaatgat ttaattacgg ctggaggtac gctatcccca gaaatatgga
     5161 ttttcatttt ctcactctta gaaagacgaa tgaatacttc tgttgcaaga agcgccgtta
     5221 caatcccaac gaacatgccc gccgaaccca tcaaggctat tggtaatact ccagcaactt
     5281 ccacagattt ctctgcacca atcggcacaa tttctgttac agctgggata aaaataacaa
     5341 tcagtgcaat ggtcattaac gctggtgcaa acggattttc aaacttccgg ttttgcgcta
     5401 aaaagtaagc aactgaagct ccaatcaaaa tagtaataat tcctaaagtc ccgttcacaa
     5461 tactgttacc tagcccctgc caagtcgtaa gtgtttcgga actgatgatc gccgacataa
     5521 aaccatccgg cttaataatc acgttattaa ttaaaaccat gaatcctgct aacataataa
     5581 aaggtaaaat agtagcaaat gcatcacgca tagactttaa atgaatttga tttccaagct
     5641 tctgcgataa ccaacttaat ttctcgatga actttttcaa ttttttatac ctcctttgat
     5701 attacaataa gtgtagcgct ttctttttgt taaataaatc tagtcttttt ccgcatctgt
     5761 attttacatg cggaaataaa aaaaggcccg ttaacttttc tctctaagaa agtctaacga
     5821 accttttggt tatatcgttt gtaacacacg cataaattct tcaaaacttg tcacacgttt
     5881 tagctctccc attgcttttg gactttctac taaattgcta ataagctcat acaccgtcgc
     5941 aagctgctgt tgttgcttgt tttttaccgc taacatgaaa atcacttgtg cctgatcttc
     6001 ctcattccac tttaccccac cgccagtaaa aatacatact ccaatagctg tttcttggac
     6061 gtttgcttca attgggtgtg gtgccgcaag tccattacct aaataagtcg gcacaatttc
     6121 ttcgcgctca aaaagtgatg gtaaatagtc ctcgccaaca atattatttt ccagcaaaag
     6181 actcgctaaa tctaccagaa cttgctcttt gtccttttta tcactaatta agaataacga
     6241 ttccttaaaa accttgtcca cttcaaattg gttcttcgtc tcatcttgct tcattaacgc
     6301 agtgatatta cgaatatccg cctttgtcaa aaatggcgat acttgaataa atggatgtaa
     6361 cttcattcgc agtggtactg tagagataac aaagtcacat gccgttccac tctgctcata
     6421 ttctttaaat gagtacacgc cgactatttc aagcgtattc tcaaactctt ttcgtacttt
     6481 agattccaaa agttgcgacg tccctaaacc agaagcacaa acaatcaata ctttttgctt
     6541 ctcagaccct atttccttat ctaagccata caaaaagtga atagccaaat atcctacttc
     6601 cgcttcgtct acatttgttt ttaactcctg ctcaaggact tctttagcaa ccaaccctaa
     6661 ttcaaaagct agtggataat tagcttttag attttttaaa tacgggtttt gtatattcat
     6721 attaaattta attctgttaa tagctggctt taaatgcaaa gcgatattgg aaatcatttt
     6781 ctggtcttgc ttaaaatcat aaccgtacag ctctttaatc ttttctaaca tcttatccac
     6841 gatgatatat tctcggtaat tattaaagtc actttttctg tttttcgaac taaggtgtag
     6901 cagcagatag gcagtctcac tttccgggaa acgaattcct tctgaaagat ctatttcttt
     6961 tataatacct tgagccgccc ttaattccgg catactaaat tcaatatcct ccaaatctgt
     7021 tgcaggtaca taacaattat cttttacacg acatacagca attgcgatat gaataatcaa
     7081 atttttaact gaaatgtccg tcatgtgaat attatatttc gctatattag aaacgacaat
     7141 ctgctccatc atttccaaat taacttctcc aaaaaaattt atttctgttt ctgtaataag
     7201 cgggcttgta gattccacta acaaatatct tgaaaagcaa aatcggatag caagttctgc
     7261 accagtaatt ctaatgccat agccagcccg tttttccact ttcaactcat tttctttgag
     7321 ttttcgtttc acttctaaaa tatccaagtt tatcgtagac ttactaacaa aaagctcttc
     7381 tgacaacgtc tccagcttta catagtcatt tttgagtaat aaatatcgaa taatataatc
     7441 tgctctatcc tctgcaaaca tcggtacaat attcatatta gctcttccta tcgaatcgtc
     7501 caaaagagct tcacgcagcg ctttttcatc accaatgacc agacgatatc ctacaccagg
     7561 aagtgattcg attctgtttc cgcctatcat cagtatttga ttaattactt taatatcatt
     7621 tctaattgtc cgagggttaa cagctaatgc ctcccctaat tctccaccgc taataaactc
     7681 catcttcaaa taaagcatat gaactatttg tttccatcta ggtaatgata attttgaagc
     7741 actcacgcag ctccactcct cacgacaatt aatttaagct atttcatctt gattataagc
     7801 ctatcacctg ataacgacaa gtcttccaga aatagtagca agtatttcga taaaaagcaa
     7861 tatcgttaaa aatgccttta ctccaatctt ctagcccaaa aagtttcacg tgaaacataa
     7921 aaaagcgaaa accctaaaaa ggattttcgc tttgatttat tttaaatctg ctacatgtgc
     7981 ttcgagatta acaccagttc ccgcagccac tcgactagcg aattccggat ctacttgata
     8041 gaaattacgt aagttgcgga ttttaatatc atcacgtact tgtgaccaat catcgacaat
     8101 gtttttcacg agtgcagcac gttctgcatc tgaataacga tcccatactt cttttgcatg
     8161 gccaaagtta tttggttttt ctgcaatcag gcgcccagaa atatcaccac ggatttcttg
     8221 ctctggctcg ataaacgctg gattttcttt tggttctgta tcgtaactat ttggctcata
     8281 attaatcgaa cttgtttgtt gtttaaacgg catatgaccg tcacgttggt tgttcgcgac
     8341 aggcgctttc ggactgttaa ttgggagttg taagtagttt ggccctacac gatgtctttg
     8401 cgtatctgag taagagaata aacgaccttg caataaacgg tcttcagaag gaagcattcc
     8461 acgtacaagt accccaggat taaaaccaac cgattctgtc tccgcaaaaa tattatctgg
     8521 gttgcggtca agcgtcattg ttcctacgtg ttcataagga aatacatctt caaaccaatc
     8581 ttttgttgca tctaatggat taaaatcaaa gttatccaag tctttcggat ccaacacttg
     8641 cacatataaa tcccactctg gatagtctcc attttcaatt gcttcataca aatcacgact
     8701 tgcatggtta aattcttttg cttgaatttg agaagcttgc tccgtcgaaa ggttcactat
     8761 tcccgctttt ggaatccagc gcagttttac ataaactgtt ttgccttctt cgttaatcca
     8821 tttgaacgca tgaacactag agccacgtat ttcgcggtaa gaagccggcg ttccttcatc
     8881 actgaataag tacataatca tcgtcgtagc ttccggtgta aggctaaaga aatcccagta
     8941 acggttgcca tcttgaatat ttgtgcgtgg atcaggcttc aaggaatgaa taacatccgg
     9001 aaacttaatc gcatcacgaa tgaagaatac cggcaaatta tttccgacaa aatcataatt
     9061 cccttcttct gtataaaact taacggagaa accgcgtgga tcacgtaatg tttctggaga
     9121 atgttgccca tgaattactg ttgaaaaacg agcaaaaacc tccgtttccg ttccttcttc
     9181 ttgcaaaaat ttagccattg tatatttttt catgcttttc ttagtgacaa atttcccgtg
     9241 agcaccagca ccacgagcat gtacaacccg ttctggtact cgctctctat caaaatgtgc
     9301 caatttctca ataagcacat aatcttctat caaagttggt cctttacgtc ccgctgtcat
     9361 cgaattttgg ttatcaccaa ctggcacacc ttgattcgtc gttaaatttt ttctatctgt
     9421 catatgtata tacctccata acaattctat atcatttttt atttgtaata attattaaat
     9481 gatactattt atattttaaa gaaggaagag acaaacttca actaaaaggc ttaaaaaaga
     9541 acagacgacc taattcatcg tctgttccct attattgttc agctttaact aaaattttct
     9601 tcacttttcg ttcgaactcg cggcggggga tcatcacact atgaccacaa ccttcgcact
     9661 taatccgaat atccatcccc atgcgtataa tcttaaatcg attggtacca caaggatgag
     9721 gctttttcat ttccacaata tcatttaaat cgaaatgctt tttttccata aacatcacaa
     9781 cctattcatc atcaaactga atatctaaaa tctctaaaat gcgatctaaa tcatcatcag
     9841 ataaaaattc aatttcaatt ttaccttttt tatcgcgacg tttaatcgag acagccgtac
     9901 caaatttatc acgtaattgg ctttcgcttt cacggataaa gataggaact ctagccggct
     9961 taattgtttc acgtgaaaca ttttcattta gattattaac cacatcttct aattgtcgta
    10021 ctgtcagccc ttgcgccaca gcttttttag ccgttgggat aatatttttc ttaagtttca
    10081 aacctagtaa cactcggcca tgtccagctg acaatgagcc atcacgtaac attacttgaa
    10141 cttcttcagg taatgtcaaa agacgaacaa agttagcgat atatggtcta cttttcccaa
    10201 cgcgttctgc taattttgct tgcgttaagc ccaatttttt cataaggaac tgatatgatt
    10261 ccgcttcttc aagtggagat aaatcttcgc gttgtaagtt ttcaatgaca gaaagctcca
    10321 tcatttcttc ttccgttaaa tcacgtacaa ctgctgggat ttcttttaat ttagcttctt
    10381 ttgctgcacg aaatctacgt tcaccaacaa caatttcata tcctttatct gtatttctta
    10441 atattattgg ctgcaaaaca ccgtgaattt taatggagtc acgtaattca ttgattgctt
    10501 tcgtatcaaa gattttacgt ggttgatatg gatttggctt aatatctttt atagcgatat
    10561 tttgtacggt ttcttcattc gtatctacat tattaaatag tgcattgatt cctttaccta
    10621 gacctttagc catgtgcaac cacttccttt gctaattcta aataaacttc agcacctttt
    10681 gattttgcat catataacaa aatcggtttt ccatgactag gtgcttcact tagacgtaca
    10741 ttccgtggaa taattgtatt aaatactttg ttttggaagt attttttcac ttcttctatt
    10801 acttgaatac ctagatttgt tctagcatca agcattgtta gtaaaacacc ttcaatttgt
    10861 aaatcctcat tgagatgctt ttggacgatt cttattgtat ttagtaactg gcttaaacct
    10921 tctagcgcgt aatactcaca ttgaacagga attaaaacag aatctgctgc tgttaatgcg
    10981 tttaaagtca aaagcccaag tgatggcgga caatcaataa tcacatagtc ataatcatca
    11041 cggattgagt cgattgcttt tttcaatcta atttcacgag agatagctgg aactagctct
    11101 acttctgcac ctgcgagttg aattgtagct ggaataacat tcaaattatc caagtctgtt
    11161 ttttgcaaca catcttgaat ggctacatcg tcaactagta catcataaat acaatgttca
    11221 atttcacctt tgttaacacc aacgccactt gatgcattac cttgtgggtc aatatcaact
    11281 agtaacactt tcttacctaa aaaagccagg ctcgagctta aattcacaga tgatgtcgtc
    11341 ttaccaaccc cacctttttg gtttgctagt gcaatcactt tgctcaatct ttttcaccaa
    11401 cccttatttt gtaccgagat ttccggttct tttatcttct attctaccaa aagattttca
    11461 tttagtctta caaaaagtaa aaataaattg aaattcgtat tttgaaagct taaaaatggt
    11521 gaaaataacg ttttgaaaac ctagaaatgt ttcacgtgaa acattttaaa ataaaaaaag
    11581 caaccaacct aagctgatta cttttctatc ttcaatctac agagaatgtt gtcttaacac
    11641 ctagaaccgt gcagactttt tgatacattc taagagtcaa atctggatcc cctgcttcta
    11701 aacgcccaat aataacagga gataaatctg atttaagcgc taaatctagt tgagaccatt
    11761 tcttctccat tcgtttagag aaaatatatt taccaaggct tgctgaaaaa ctatctaagt
    11821 aatgagcaat gccttcattt gctaaagctt tattttttag tgtttcgaat tgatagtctg
    11881 catgaccaat gcttgtttcc gcttcaatac gacgcaagaa tacgcgtttg acttcttcgc
    11941 ggtaagcact catttgatcc gtgaacgggt ttttatcttt aaaatagcct ttaacgaagc
    12001 aataataggt ttcatcgcca ctaaaagcag tgaagtaaat taaacgacaa tttttatctt
    12061 taaaatgtgc tttcatctct tgaatcggtt ggtctacagt tgtttccact cgagttgttt
    12121 gtagtgagta agcttgactt ttaccgataa ttaaatggac atcggggaga atttgcttac
    12181 cagtgctaag ttttctcgtt tctgctgttt ctagttgtaa caggccttga aatactaaag
    12241 tggccattag tggttcttcc acaattaaat tttgtaagaa atcatacgct tggaactcat
    12301 tttgttcgtc tttcacaaaa atgatttttg ccattcgttt cgtgattcca ctcagagttg
    12361 agtgaatcac tccctccttt acaactttac ctaattctat tgtacttttt tctgctcaaa
    12421 attgcactta ttttctctat tttttacaaa ataaaccaaa accactcgaa ttgagttgct
    12481 ttcctttttt gaaaataaaa aacccgcttc aataagcagg ttttgtagct attttttcgc
    12541 ttctttcgcg atttggtacc aactgtaaat cttcactatc gcaaagaaag tatagccaaa
    12601 tgcgatgaga tatgccccgt aattaattaa tagaatgttg aagccacttc cccaaccaga
    12661 ctcttctgct acggctactg ctcgggcata ggggctagtg aaaaagtagg taatatatag
    12721 tggattaaaa cttaaaatag cacttgtaat cgctattacg aaagatggaa gtaccatcaa
    12781 acaactaatg acaccaactg catgtccaat tatcttcaaa aacctcactg ctacacctct
    12841 tatttctttt taggaatttg aatggtaatt tgataaaaat catctgtctc ttcttcggtg
    12901 aaatctaggt ccattccgtt atctttaacc attgtaaccg attgtttaat cgtattcata
    12961 gcgatacgca cgtcacgact aatagcttgg cgttttggtt tggttttttt agtagctact
    13021 ggttttttca cgcccaaaat ttcttgaatt cttgcttcgg tttgtttgac gttccagtga
    13081 ttttcagcta tttcggctaa aattgcgact tgctgttctt ctgtttctaa tgcgagtaac
    13141 gaacgagcat ggcgctctga aatttgtttg ttaagaacgg cttcttggac agtttctggt
    13201 agttttagaa gtcgcatttt gtttgcaatg gcagactggc ttttcccgac acgttgcgca
    13261 agggcttctt gtgtcacgtc ctgcatgtct agtaaactcc gatacgcttt cgcttcctca
    13321 attggcgtca attcttcacg ttgcaagttt tcaattaacg caatcgctgc tacttcttca
    13381 tcatctaaat tttgaataat tgctggaatt ttttccattt ctaaagaaag cacagcacga
    13441 aaacgacgct cgcctgcaat gatttcataa taatccggtt ccatttctct aaccacaatc
    13501 ggctgaataa cgccgtgaat tcggatagtt cgagcaagtt catcaatctt atcttgatcg
    13561 aatactgtcc gtggttggaa ttggttcggg aaaattttat ccataggaag ttcttgtacg
    13621 cgttgtactc cttcttctac tatatcatcc atttgattct tctctttttt tccaaataaa
    13681 cgtgaaaaag gcatctgggt ccttcctttc cggaacatct cggggtttct taatatatta
    13741 tctggctatc cgcaagtctc ttaaactatt ttagcagaaa tgctagagaa aaacacgctt
    13801 attctgtcct ttaaatgtga aaaaatagat agagctgcta aagtttcaca gtcctatcta
    13861 ttttcttaat gaaattcatc ggtaacggta ttgatggttt tttccatatt gtcgcggtaa
    13921 gactcatttt gtagcaacat catggaaata atatccatca catacataat cgaaaactgg
    13981 ctattagcaa aatacctttt acttacgaat aaagtattgt aaaccggaat agtgacgtca
    14041 ctgatttcgg tcatttcact attttcaaaa ctggtaaatg tagcaacttt acttttgttt
    14101 ttcttagcga tttttagcgc cgtgactagc tctggggtgt tacctgaatt ggaaatgccg
    14161 ataacaaaat cttcttttgt tgtgatggag ctagtgataa tcatcatatg cggatcgttg
    14221 acactgatga cgtttaaccc cattcgaata aggcgctgcg acatttcaac ggcagtgagc
    14281 cccgaacttc cgacgccgca aatatagact cgcttagctt cttgaatgta ctgcaccact
    14341 tcacggatct tcgctggttc aatcagcttc accgtgttat caattacttt atggtagaac
    14401 gaataaacct cttcaaaaag gtcatcataa ccaagtgacg gaaccattgt cgctgcagta
    14461 ttcacccgca ttttcaaatc aacaaaacta tcacagcgta catggcgaca aaatctcgtt
    14521 atcgtcgaaa tggatgtgcc agtttcttca gctagctctt taatattaat attcttgagt
    14581 tcatcacttt tttctaaaat atacttcgca atttgttttt ctttattcgg taattgattg
    14641 taattttgtt ggatttcatt taaaatcgtc atctttttcg gcctctttct ggtttaagaa
    14701 atgataaagc gcaccaatca tccctgcttc atttcccagc tttgcgaaag taatatctgc
    14761 tgtatcgaac atcggtgaga ttaatttggt tgagatagcc gcttttagac gcggtttgaa
    14821 gaatgactct tcttccatta atccgccacc gagtacaatc acttctgggt tgaaaatata
    14881 gattaagttt actacacctt ctactaaatt ctcaatccat tgctctattt cagccagcac
    14941 atctgcatct ccgctatagg cccattccat gacttgacga ccatttaacg cattttcctc
    15001 gatatttttt cgcgaggcta cttgtttaat caatgctttt gttgaagcaa catcttgaaa
    15061 tctcccttgt gaaaggtgca tatagcccac ttcacatgct gtaaaagacg atccatttat
    15121 tagtttgtcg tttagtaaca ttgctccgcc gattccggtt ccaattgtca aacagagcac
    15181 gctcccacgt ccccgtgctc cacccaacca aaactcgcca aggcaggctg catttacgtc
    15241 attttccact acgcacggaa tatgaaatcg gtgctctagt tcagctttta tttcagttcc
    15301 agtgtatttg ggaatcgtgt agccagcata aataattttg cctttcacag aatccacaac
    15361 acccgcagag gccacacaga cgcccgctac attcgttttt tcttgttcga caatccgaat
    15421 aagcgcgggc atgatttgat tcgctccgcc agttataggc gtcacacaag acttaagatc
    15481 gcccacccgc ttaccttctt gattaaattt agcatatttg atactcgttc caccaatgtc
    15541 gacacaaaga taattttcca tttcttcacc tctttagtga aattattatc cttcttttgt
    15601 taactcatcg taaaacgctt ggcttgaatt tgcttcgatc aaacgggtta ccttttcctc
    15661 gtccatgagc acttctgcaa gctctgacaa cacttctaaa tggctttctg agtctgttgc
    15721 cgcaagggta ataactagtt tcaccgggtc gaacatgtcg cttccaaaag ccacgccgtc
    15781 agccagtgtt gcaaaagtta ggccaccgcg aatgacgccg aattctggtc gtgtgtgcgc
    15841 tagggcgata tgtttagcaa tcactatata tggtccatta ttttctacac tttgaatcat
    15901 tccgtcaata taactctctt tgatagcgcc tcgttctagt aaaagtcttg ctgacgtttg
    15961 gatggcttcg cgccagtctt ttgcttttaa atttacctca atatcttcta aagtaactcg
    16021 gtctaataac atgctcgcgc ccccttattt attatattca gccattattt ctgttaaatc
    16081 tacctccgcc agcgactctc gctccaaata gttcggggtt aaatcactat gttttgttac
    16141 ttcatttgga atgacaagaa cattgacacc cgcactattt cccgccaaaa ggccatttcg
    16201 cgagtcttct acgataagag cctccgatgg cttaacatcc agtgctctca aagcttctaa
    16261 aaacaagtcc ggatccggct tgattcgcgt aacatcctcc gccgtaataa tcgcatcaaa
    16321 atatccgagc aagcctagtc gttccaaatg atagagtggt tttggtcgct gcgatgaggt
    16381 cgcaagtgct aattttaatc cacgttcttt taattcacga ataaagcttt ccacgccttc
    16441 tttggccggt aaacttttac tgttttcaat aaacgttgct tgtgtttctg cttcgaagtc
    16501 ttgtcgatta atatccattt gctctgtccg gttgagttcg cgaaacaaat cgtccacatt
    16561 tgacccaacg cactgcaaaa actcctcgat agaaaggtca taattctgct tcgttttaaa
    16621 ccattcttta aaaatttcat accaaactac ttctgtatca ataacaattc cgtcaaagtc
    16681 catcacaatc gcttttaaca ttgtcttcct cctacccatt ttactattca aagcgctcct
    16741 aaaaagaagc gcttacaaat aagttaattc ttttgttctc ggtctgcaac tattttatct
    16801 atcagttctt gatattctgg tgcgccgagg taatccgtta tttctacata atacgcatct
    16861 ggttgctttt ctttggctcg gtcgataagg gatttatgcg tcacgactac atcgcattcg
    16921 gtcggcaatt cgtggatggc gatatggaac actttaatat cctctaagcc agcatttttg
    16981 atttttttct gtagtacggt cgcgcccatc gcactagatc caagtcccgc atcacaggca
    17041 taagcgattc ttttaacatt tttaaaatta aaatcatcta ctgtagcttc gaaaacggag
    17101 gaaatactgc tctttttgcc tttaaggctt tccattttct tcgctgcatc ttgtagttca
    17161 gagtctttgt tacccatgcg tttaataaat ggaatggcag taatgaatgt aacaagtgcc
    17221 gcacatagca ccgcaataag gatcttaatg tgatcgccgg gtgctgccat catcatgatt
    17281 gtaataatac taccaggaga agccacacca acaagtcccg catttgtcat tgttaaaata
    17341 aatgttcctg tcataccacc aagaattagc ggtaaaataa gaattggatt cattaaaacg
    17401 aatgggaagt aaatttcgtg aataccacca aataggtgaa taacacttgc cccgtaggaa
    17461 gatgctttgg agtttccttt accaaagaac atatagccaa gcaaaattcc aagtcctggt
    17521 ccagggtttg attctagtaa gtaaagcact gatttccctg tttctgcgag ttgcaaggtg
    17581 gctagtggac ttagaatacc ttgaccgatc gcattgttta agaataagac cttggccggc
    17641 tcaataatta aagccgttag tgggagcaaa tgattattga ttaatacatc cacgccactt
    17701 gctaatactt ttgttacagc ttcgaccatt ggagcaatcg ccacataaga aaatagtgct
    17761 aatcccgctc caattatccc aatcgaaaag ttgttaacta atagttcaaa cccagctgga
    17821 atttttccat caatacgttc atcaaatttt ttaagtaccc aagcagcgag cgggcccatt
    17881 atcattgcgc cgataaacat ggttatatcc gaactaataa ttgcacccat tgttgcaacg
    17941 gtaccaataa ctccgcctcg gtaaccgtga accgctcgac ctccagcaaa ggcaataaga
    18001 agtggtaaca agtaatttag cattggtgcg atgaaccctt ttaacatctc agagcctgta
    18061 gccaccccaa ttgccgttaa aataccccaa gccataaaag ctcccaaatt cggaatgacc
    18121 ataccactta gcttactccc aaacttttgt acatgtaccc gaatagacat atttccccct
    18181 ccaatcatat gtgtggcgct attttatagt gatacttctt ttccttcagc aatggaacgt
    18241 tcaatcgcat ctactactcg taaggaatca tacgcttctt ttggtgtaat aattgatttt
    18301 gtgttattcg ccacgttatt aataaatgcc attacttcct cagctaaatc gccggaaact
    18361 tcgccatttg tgtaatacca atgtcttgaa tccggataag ataccccttt ttcactaaca
    18421 aaacgaacac cgtggtcgca agagtctaca tatgctacgc cttttgttcc gactaattca
    18481 agtttgtcgt caatgatggt tggcgaattt tctggcaaga cccagcaagc ttccaggcaa
    18541 gcaattgcgc cattttcgta cgtaacaatg gcataaatca catcattcat gccgtattct
    18601 ttaagtaaaa cactgcgact tttggcaata actttgactg gctcgctatc catgtaccag
    18661 ttaatataat caatatcgtg aatcattacg tgcatactta aatcagaagc acctatgtaa
    18721 cgctttggcc cggtaattgg actgttacga cgacaataaa gatgaataat atcacccaat
    18781 tcgccattat cgaggcgctg tttaatcata ttaaaacgag gatcaaatct gagtaaaaag
    18841 ccaactgtaa acactttgtc gtagtctttg gtcagttcat acattgcttt gccgtcttcc
    18901 agttcttttg cgagtggttt ttcgagtaaa atgtgttttt tgtattttac agcttcttcc
    18961 acgcaatcac ggtgcatatt atcaggtaaa acaatgctca cagcttcaat ctccgtattt
    19021 gctagaagtt cgtggtagtc tttgtatgct ttacactgaa atttttctgc catttcggcg
    19081 cgtctttcat cgttgtactc acaaattgct actaactcta cttgcggaag cttttggtaa
    19141 atttctgcat gatactgccc catttgtcca acgccaatta cgccaacttt gatttgcttt
    19201 gtcatatcac ttacctcttt cttcttagat ttttttaatt tcatttgtaa agcgggtggt
    19261 tatttcctgt ggccgagtta ctgcgccgcc aacaacaacg gcataacaac ctaacgtaag
    19321 aacttgtcgt gctttactag gcgaatcgat tttcccttct gcaatcactg ggcgcttcgt
    19381 acttttcaaa acttctttca aatgggagaa atcgtcgtcg ctgatatttt tattcgctgt
    19441 ttcttcggtg tagccgtaaa gtgtcgtgcc aattaagtca aaaccgaggg aatcagcgta
    19501 ataaacgtct tcaatactac ctgtgtctgc catgaaaagc gtgtttggaa actcttttcg
    19561 aatggcactt agtatgtctt tgaggtcttc gttatgtggt ctttttctcg ttgttgcatc
    19621 catcgcaaca atttctactc ccgtttcaca tatttctctg acttcttcta aggttggtgt
    19681 gataaatacg tccgaatcat cgtagtcttt tttgtaaata ccgataatgg ggacgtcgat
    19741 ctcactttga attgccctaa tatcttttgc ggtatttgct cggataccaa cagcaccacc
    19801 ttgaactgcg gccagagcca ttttcgacat aataaatgca ctatgaagtg gttcgtcttc
    19861 taaagcttgg caggaaacca ctaacccgcc tttgattttt tccataacag aattgcccac
    19921 tgatactcct cctctatact gtgtttcagt gtaaagtatg cgttttcaaa cagactatat
    19981 cataagaaaa tgattttatc aatatcaatt aaatgaaaat tattttcata ttttagtgtg
    20041 gctagttgcg gaaactagct ttaaaaaatg acgttgctgt taaaaataaa aagtcctttc
    20101 gtttgaaagg actttgttag tttattcgat tggtaatttg ttgggtgttc cgggtttgcg
    20161 tggatatttg ttgggggttt cttttgtttt cgtgatgacg tagatattgc gctcgctttc
    20221 ttctactggt agggagaaag agaagtgttc ctcgactttt ccgccgaata gtttgatggc
    20281 tttttcggct gtttgcagct cttgctcggc ttgggctgct ttcattacta ggaacgaacc
    20341 gccttttttg acaagtggca tgcacagttc ggataatacg ctcattcttg ctacggcacg
    20401 tgcggttaca aggtcgtatt tttcgcggtg cgctttgttt tgaccaaatg tttcagcgcg
    20461 atcatgataa aaatgcacat ccgttaggcc taatttttct gctagtgcat caaggaaagt
    20521 catacgtttt ttcaaggagt ctacgatgct tacttttaga tgcgggaagc agattttaat
    20581 tgggagactt ggaaaaccag cgccagcccc gacatcacaa atcgtatcga acttagtaaa
    20641 gtctacataa aacgcggcag agatagaatc gtaaaagtgc tttaaataca cttctttttc
    20701 atcagtaata gctgttaaat tcattttttc attccattct actaacattt cgaagtaatc
    20761 gtggaattgt tttagttgcg tgtcgcttaa ttctattcct ttttcagcaa gtgctgtttg
    20821 gaattgctct ggattcatat tttttcctca ctttattttc gcgatttttg ccgtgtttag
    20881 gatggtagac gggtttggtt tatactttta aacaggcttg taccatatat tttagctcat
    20941 tattttcaag tataagtatt ttcgttcttt ttagcaagtt cgtattacgt ttaacaatta
    21001 tcaaacttgt tggcattctc tttaaaactt tttttggctt gatttaccca ttttccttct
    21061 gctgtggtgg aaagtccatc tatgtaaccc tgacaattgc tttttatatc tgctattttg
    21121 tcccgtttga tcattttgaa cattcgtttg cgattttctg atgttgcatg agtttggctc
    21181 gccacaaaca tcccaataag atttttttct agatttctgc gtgactctaa taattctgct
    21241 tttagtttat ctatcatgtt atagatcacg atcctttttt agctgatgta gttcttcttc
    21301 ataagaattc acttgtttct tataaagtgc ttgatgctct tcgtgttcat tttctagctt
    21361 tgttagtgtg ttttttactt tccaatcgcc ttcttcttgg atagaactga ttaaatggta
    21421 ggctttttgc aagtcttcag atgcttcgta atctcttttt tgatggatat acctgatttg
    21481 ttcagaaagg ttttctagtt cttggtgaaa ccgccatttt tcttgagatg catcgtccat
    21541 cgcttcgtcc aattgtcgtc tttttctatt aaaatcatca tctaaatttt ctagttttag
    21601 cagtagttgt ctttgtttat ccatacatgc tccctatttg tttggctaat tcttggtcgg
    21661 tttttagctg gctttttatt gcttcgttga ttcgttctag caatttatca tactcttgtt
    21721 ctattttggt tgcttcgact aaggattttt cgcagtcttg cactgtgtct atcacaattt
    21781 ccggctcagt cgccccgccc caagcaagtg cggcgagtat ttctgactca tatagattgg
    21841 agccgatatc ccttgcatct gaaagcgtat cgcgccacaa ctcttcagca ttctcgattt
    21901 ctttatcaaa aacatctttt aaagctctaa tttcgccttg aatcgtttgt ttcatccctt
    21961 gcgtaattgc tagtgcttcc gctgcatcca agaatatttc ttcggatgag gataggccac
    22021 caccgctttt tgtaaaactg gttcgcatga tgttgatagc tgctaattgt tgcgctgtta
    22081 cgtatttagc taattgaagg ctgccttctt tatttgttag gatgtttcct tctttgtcaa
    22141 actgataacc accccacata tgttgctcaa ccataccagc ttttttcgac tcaacctcta
    22201 ttaaatggcc aattgtcggg tctccgatac cataaccaat tggcacataa tccttcctat
    22261 caataaaatt aaataatcta tctaaagcgt ttattgcttt tacggtatct tgttgttttg
    22321 gcgttaggtt ggagtagata ttcgggcctt ggtagaagaa acccccgctg atgcgtttga
    22381 tgtctttttt atctaagtct gcgatagcgt actgggcgtt catggagcct agagaatgac
    22441 cgtatacgta gatttgggcg tttgggtaga gtttcatggt ttgttttaag gtttctgcgg
    22501 aggtttttag ttggggtgtt actgtggatc ctccgccatt tgtgatttgg attgcggttg
    22561 gaatatcatt tacgccccaa tccgtccaca catcaagact atccttatga aacggcgtaa
    22621 gaccacttgc cagagtgggt gcagtggaac ctctgtaaag aactgttacc tcttttactt
    22681 tgcttctctc aatatgggaa gctgtgggcg gcgtgtattt ttctgtgatg atataggttt
    22741 gctgtccggc tgctttgttg ttgattgttt gggatacgtt tcctatcttt ttttctcgat
    22801 tggatattga aatattcacc tcctgcttaa gttctaactt gctgtactct ttttttgcca
    22861 attccactct ctcttgatca gtatttacat gccccatcat ccctactcct cccaacgacc
    22921 taatagttta gaaagctttt cagatacaac tgaagcacca ccacttaact ctccattgtt
    22981 cttgctcaag gtatatgata catttagttc tgaatcatta ttaattatta atccgacttc
    23041 tatacctccc attgggttgt gctctacgct tccttcttca attttataag aatgaattat
    23101 acctttttct gtaaaagcat ttggatctaa atttgtcagc cttttttcga atacttgttt
    23161 tgcttcatca ctataaacta cattcatcat ttctttgttt aatttctcct catccatata
    23221 gaatttcacc cctaaaccaa aaatggttat tactataatt gctagtgcta ttatccatct
    23281 ttttttcaac tcttcacctc tgctgtatgc tttttatttg taggtctatt ttatcacatg
    23341 ttagaaattt tcactttctt ttttttcagt cttttaacgt ttgtttaatt tcttagttag
    23401 tattggctgg actatcttaa ctccccttaa gttccaattt ctttgtaagc tccttagaga
    23461 tgctagcacc cccaccatct aatttgtcgt tctgttttcc taaagtatag gtaatatacc
    23521 actctaaatc cttatttata attaaagtaa catttattcc tctcattgga tttctctcta
    23581 tactttcttt attaatttca tatgattgaa ttataccttc tttcgtgaat gcttttgcat
    23641 ccaagtttgt cagcctcttt tcaaatactt gtttcgcttc atcactataa actacattca
    23701 tcatttcttt atttaatttc tcttcatcca tatagaattt cacccctaaa ccaaaaatgg
    23761 ttattactgt aattcctagt actattatcc atctcttttt caactcttca cctctgttgt
    23821 atgacttttt atttgtaggt ctattttatc acatgttaga aattttcact ttcttttttt
    23881 cagtctttta atcgtctctt agctctataa aaactcattt atatccgttc aaaagcccca
    23941 attgttttgt aagctcctta gatatgcttg ctccaccact ctttaaatct tcattatttt
    24001 tcttcaacgt gtatgttaat ttcaaagcag gatccttgtt aataactaat gcaactatta
    24061 ttccgcccat tggattaggc tctatacttt ccttgtcaac ttcatatgat tgaattagcc
    24121 cttcttttgt aaatgctttc gtatcaataa gttttatatc atcattgaat acttcttttg
    24181 cttcattgct acaaaccaca ttcatcattt ctgtatttaa tttctcttca tccatataaa
    24241 attttatccc tagaccaaaa ataatcatta ttgcaattcc aaatagtatt atccatctct
    24301 ttttcacaca ttcacctctg tttttatttt cttagttgtc taataatttt cctaattttg
    24361 cagaatttcc gccaccatca tcaattagtt ttttgtcatc agctttattc aatgtaaaaa
    24421 aaacatataa ctcagaatct ccattaacgt gcaaagtaac attgattcct cccatagggt
    24481 tttgtttgat acttttctta tcaatttcat atgtgttaat tacacccttc ccagtcaatg
    24541 ctttagcatc caaatttttc aacccatttt caaaaactct tttcgcttca tcactatata
    24601 ctacatttat catttcttta tttaatttct cttcatccat ataaaatttc acgcctaatc
    24661 ccgcaacaat cattactaca actaccattg ctataaacca cctctttttc acacattcac
    24721 ctctgcagta tgtcttcttc tatgtaatcc caatctacct taattaaaaa caagaaaaaa
    24781 ccacattatt cagcggaaac tttcaactta aacggtaagt ttgaagtttc cgtgaacatg
    24841 cggtttcagt aattatagta atccgtgttc ttatttactt attttcgcta tctttccttg
    24901 ctcaatataa actaacaaaa tagatatatc ggctgggttt actccgctga tacggctcgc
    24961 ttgggcgatg gaaaggggtt cgattttctt taatttttct agggcttctg ttgctaggcc
    25021 gctgattgca tcataatcga tgttttctgg gattttcttg tcttccatgc gtttcatttt
    25081 ttctacttga aggttggatt tttggatgta gccttcgtat ttaatttgaa tttctacttg
    25141 ttcagcgatt tcgtcggtca caaatgtttc acgtgaaaca atttgggcga tcttgtcgta
    25201 agttatttcg ggtcggcgaa gtaaatctgc tgctagaatt ccgtctttta gctcgcctga
    25261 gccgatttct tttagcattg cttggacttc agcagttggt ttaatgcgtg ttttttgtag
    25321 tctttctttt tctgcttcga tggcactttg ttttgctaaa aagcgttcat aacgttcgtc
    25381 gctaattaag ccgatttcat gaccgatttc tgttaaacgt aaatctgcat tatcatggcg
    25441 taatagcaaa cggtattcgg cacgagatgt aagtaaacga tatggttctt cggttccttt
    25501 tgttactaaa tcgtcaatta aaacgccgat ataagcttgg tcgcgaccaa ggataactgg
    25561 ttctttttca aagactttac gagcagcatt gattcctgcc attaagcctt ggccggctgc
    25621 ttcttcatag ccacttgtac cattaatttg gccggctgtg aaaagacctt cgactaattt
    25681 agtttcaagt gatggccaca gttggtctgg cattactgca tcatattcga tagcgtagcc
    25741 tacacgcatc atttctacat tttcaagtcc cggaatagtt cttagcattt cgcgttgcac
    25801 ttcttctggc aaactggtgg aaaggccttg gacatatact tcctcggtat ttttgccttc
    25861 tggttcaagg aagatttggt gtcttggttt gtcgctgaaa cgaacaattt tatcttcaat
    25921 ggatgggcaa tatcttgcgc cagtgccttt tttcgttgct gtaaacattg gtgaacggtg
    25981 taagttcgct tggattattt cgtgggttgt ttcgttggta taagttaacc aacacggtag
    26041 ttggtcaagc aacatttcca ccgtatcaaa gctaaatgcc cgcggatgat cgtcacccgg
    26101 ttgttcttct gtttttgaat agtcaatcgt acttgatttt acgcgcggtg gtgttcctgt
    26161 tttaaagcga cgcagttcaa aacctagttc ttccaagtgc tctgagagtt tcacagaagg
    26221 ttgttggttg tttggaccgc tggaatagcg cagttcacca acaataattt cgccacgtga
    26281 gaaagttcca gtagtaataa cgactgtttt cgcgtagtaa atcgcgccac tgtttgtaat
    26341 aacgccttta cacacgccat cttcaatcac taaacggtca acaagacctt ggcgcaaagt
    26401 gatattttct tctttttcaa ttgtgtgttt catttcgtgt tggtaatccc atttgtctgc
    26461 ttgagcacgt aatgcgcgaa cagccgggcc tttacctgta tttagcatcc gcatttggat
    26521 gtatgtttta tccgtgttgc gacccatttc gccaccaaga gcatcaattt cgcgcacaac
    26581 cacgcctttt gctggacctc caacagaagg attacatggc ataaaagcga ccatatctaa
    26641 atttatcgtt aacatcagtg tttttgcgcc cattcgacca ctggcaagac cagcttctac
    26701 tcccgcatgg cctgcaccaa caacgatgac gtcaaaagtt cctgcatcat aggtttgcat
    26761 tttataaaaa catctcctaa aaaatcattt tccaaggcaa aattgattga acaactgatc
    26821 gagtaattca tcctggacag aatcaccagt aatttcacct agtaaatccc atgcacgagt
    26881 catatcaatc tggacaatat ccactggcat accgagctga atccctgttg taacgccatt
    26941 taaagcttca agtgcttggt gaaggagcgc aatgtgtcga acgttcgata catatgttgc
    27001 atcacccgca tcaatgtcac ccgcaaaaaa tagtgtttta attgcttctt ctaaagcctc
    27061 taaaccttca tcgtttacta gagaagtgga aacaatcggg ttttctcccg caagttcacg
    27121 cactctattt atatcaagct ttgtttccaa atctgtttta tttaaaacga ccacataatt
    27181 atgacccgcg gctgcttcaa ataacgcttc atcttccact gtcagctctt cgttttgatt
    27241 taatactagc aggataaaat cggcatccgc caaggctttt cttgaacgtt ctacaccaat
    27301 tttttccaca atatcttctg tctcacgaat tccggccgta tcaattaaac gcagcggaac
    27361 accgcgaaca ttgacgtatt cttctataat atctcgcgtc gtcccagcaa tatctgtgac
    27421 aatcgctttt tcttcttgaa ttaattggtt aagcaaagat gatttcccaa catttggtcg
    27481 accgataata gccgttgcta ggccttcacg aagaattttc ccttggcttg ctgtttgtaa
    27541 aagttgctcg acggaagcgc gaactagctc ggttttctcg agtagcattc gctgggtcat
    27601 ttcctccaca tcatcatact ccggatagtc gatatttact tcgacttgcg ctagtgcatc
    27661 caaaatttct tgacgtaaat tgcgaatcaa ccgtgaaaga tttccgtcca tttgtctaat
    27721 tgccacgccc atcgcccggt ctgtcttggc gcgaattaaa tccatcacag cctccgcttg
    27781 cgacaaatca attcttccat ttaaaaatgc gcgctttgtg aattcacctg gttcagctaa
    27841 attagcccca tttcgaagta acagttgcaa cacgcggttc acggaaacaa ttccgccgtg
    27901 cgcgttgatt tctaccacat cttcccgtgt aaaagtacga ggtgcacgca taactgtgac
    27961 cattacttcc tcaattactt cgccgtcttc ttttatatga ccatagtgaa tggtgtgact
    28021 ttctgcttca cttaagctat ttttggcata aaaaatacga tccgctatct gaatcgcctc
    28081 tggaccgctt aatctaataa tagcaatggc cccttctccc ggcggtgttg agattgcagc
    28141 aatagtatca aattccattc tttactcatc ctttctcatt agaatttcag ctcaaataag
    28201 ccttatccta ttttgaataa attttggcac atgattttgt gcattttcaa caacttacgc
    28261 tccgctttga ccaaagcaat taaattgtta gtattttgaa ggttatccat agacttatta
    28321 acatatccac agaaaaacca ttaataaaaa ttcatccata ccattttaac ttatccacat
    28381 gtgaataaca atagttttat ccttactagt taagaaaact taaattttct cgttaaagct
    28441 ttaacttatc cttccacttc cttggcttta actcaattct ttttatctat actaaagtta
    28501 aaaggaggag aaaaaatgaa aatacataaa ctaacttggg tgctattaat ggggctacta
    28561 ctgctctcat cctgttccac gaagcaacca aacctatatt tgtcagcaaa tgccgccgcg
    28621 gtttattcag tcgaaaatgg tgaaccgtta tatgaagaaa acgctgataa agtaatgccg
    28681 attgccagtt tgaccaaatt aatgacagct tttttagttt tagaggctgt ggataacaat
    28741 gaattatcgt gggatgaaaa gcttgatctt gttcgattgg atgatccttc cgcggtttcc
    28801 ctttacgcga ttacacaaaa gagaacgtgg tccgtcagag atttatacag cgcgatgctc
    28861 actatgtctg caaatgatgc cgcggaaaca ctgggagatc gtttagacgg agctaatttt
    28921 cccaaagaaa tgaataacca ggctaaaaaa ttaggtatgt cgagtaagac tacatttgtc
    28981 agtgctagcg gacttgatgt tgacggaaaa tccgctgttt ctaccacaaa ggatttattt
    29041 ttgctatcat ctaaattaat ttccactcat cctgaagtgt tagagacaac atccaaatct
    29101 agtgtcacca ctgacaaagg cgccaaactt gaatccacca atgactcact cggttcgatt
    29161 caaggcttag atggactaaa aactggattt acagatgaag caggctattg ctttattgga
    29221 acagctgaac gtggaggaaa acgtgtgatt tcgattgtcc tagatgcggg aactgcggaa
    29281 aaacgattta aagatacaga gaagctgatg gaggttggat ttaaagaaaa ttaacgaatg
    29341 aaaaagaacc tctctttcgc tgagaagttc tttttaaata gttcagcatc aactctttaa
    29401 agcgcataga tacttttcca tgtatacatc tttattttta gaattatatt gcataataaa
    29461 gcgtggatgt tccaaaggta tgattgtatc aaaaaaatga tgctcctcat
//
LOCUS       DABQVC010000008        28618 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.008,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000008 DABQVC010000000
VERSION     DABQVC010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 28618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28618
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.008"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..1328)
                     /gene="rlmD"
                     /locus_tag="IBJ56_000255"
     CDS             complement(<1..1328)
                     /gene="rlmD"
                     /locus_tag="IBJ56_000255"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HAM3416540.1"
                     /translation="MEASLLKKNQSIELTIEDLTHDGSGVGKIDGYPLFIPNTLPGEK
                     VTAKIIKLNKNYGFARMETIESVSADRVEPPCAVYSKCGGCSLQHLSYDGQLEFKRNQ
                     VEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMS
                     TCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTRFAHTTGQLMIVLVTT
                     KERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRF
                     AISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGSISLCLAKKAKHVYGV
                     EIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEK
                     LLETILAMKPKKVVYVSCNPGTLARDMKILTDGGYVAKKVQPVDMFPMTT"
     gene            complement(1352..2107)
                     /locus_tag="IBJ56_000256"
     CDS             complement(1352..2107)
                     /locus_tag="IBJ56_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416541.1"
                     /translation="MTSGHQFKRFTMIIIVLIIAIAAAVFFFWQVDAEEQAPKVSKTE
                     LIESNKVWINNQMQIPIQDNIILSIPAANTNTTIATNGDLILEITNEEILNELASSDN
                     RYKGIKAYRLRIEAKKVSEYITNTKYRYPTTTIQKKFANYEITSGERSVQTEKTPVKI
                     EDTTNNNIKVSLKTSYSSDDAEVAAGIFNSQIPEETTITDNTKALTTNKNVTIYPKTF
                     IYDFTLQKNTMLVFKEQEEAVIKEPIGIEYIIK"
     gene            complement(2255..3187)
                     /locus_tag="IBJ56_000257"
     CDS             complement(2255..3187)
                     /locus_tag="IBJ56_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HAM3416542.1"
                     /translation="MQKHARVIYNPTSGREIIKKNLADVLSILEQAGYVTSAHATTAE
                     PDDAKHAAEEAVRDRFDLVVAAGGDGTINEVINGIAEKEYRPKVGIIPTGTTNDFARA
                     LHVPRDVIKATKIIAAGQSVAMDIGKANETYFINIGGGGRLTELTYDVPSRLKTMLGQ
                     LAYYLKGIEMLPSLKATKVKVEYDQGVFEGEVMFFLLGLTNSIGGFEKIAPDAKLDDG
                     KFSLIIVKKVNLAEFIRLVTLALRGDHIKEPNVIYVKSEKVIVNSEDKMLINLDGELG
                     GETPMEFRNLRQHIEFFASVDDIPATDLFIKENS"
     gene            complement(3333..4763)
                     /gene="gatB"
                     /locus_tag="IBJ56_000258"
     CDS             complement(3333..4763)
                     /gene="gatB"
                     /locus_tag="IBJ56_000258"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HAM3416543.1"
                     /translation="MNFETVIGLEVHVELKTNSKIFSSAPAHFGAEPNTNTTVVDLGM
                     PGVLPVLNKRAVEFGMKAAMAINCEIAKHTKFDRKNYFYPDNPKAYQISQFDKPIGEH
                     GWIEIEVGGKKKKIGITRLHLEEDAGKNTHTSHGYSLVDINRQGTPLIEIVSEPDIRS
                     AEEAYAYLEKLKSIIQYTGVSDVKMEEGSMRCDANISIRPIGQEEFGVKTELKNLNSF
                     NNVRKGIEYEEKRQAEVLKSGGIIEQETRRFEEATGKTSLMRIKEGSDDYRYFPEPDL
                     VDLFIDDAWKERIRAEIPELPDKRQIRYINDLGLPAYDAMVLTLTKEMSDFFEATLAA
                     GADAKQASNWLMGEVSAYLNAEQKELHETGLTPENLAGMIKLIEAGTISSKIAKKVFR
                     ELAQNGGDAEQVVKDKGLVQISDEGALRTIISEILDNNEQSIVDFKNGKDRAVGFLVG
                     QVMKVTKGQANPPMVNKLLLEEMNKR"
     gene            complement(4775..6226)
                     /gene="gatA"
                     /locus_tag="IBJ56_000259"
     CDS             complement(4775..6226)
                     /gene="gatA"
                     /locus_tag="IBJ56_000259"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HAM3416544.1"
                     /translation="MGLFDFSVKELHDKLVKKEISPFDLVSESFNRIESVEDKVGSFI
                     TLNKEAAFGVAEELGDAGIDPNNMLSGLPIGIKDNIVTKNLRTTAASKILENFDPIYD
                     ATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAV
                     AAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNV
                     EDNAYLLEAISGLDANDSTSINQPVERFSDSLTGDIKGLRIGVPKEYLGEGVDPGVKQ
                     AVLDALKTLEKLGATWDEVSLPHSEYGVASYYILASSEASSNLSRFDGVRYGYRSPNA
                     TTLEELYTKTRSEGFGDEVKRRIMLGTYALSSGYYDAYYKKAQQARTLIKQDFVNVFE
                     NYDVIIGPSSPTTAFKIDGMINDPITMYSNDILTVPINLAGVPAISVPCGFSDGLPVG
                     LQIIGNYFEESLLYKVAHAFEQETTFHKEKPNL"
     gene            complement(6250..6543)
                     /gene="gatC"
                     /locus_tag="IBJ56_000260"
     CDS             complement(6250..6543)
                     /gene="gatC"
                     /locus_tag="IBJ56_000260"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HAM3416545.1"
                     /translation="MSNISKETVEKVANLAKLEVSETEATAFAGQLGKIIELVEQLNT
                     LDTTNVEPTSHAIDVSNVLREDVATKGLDRKEVLKNAPDEQDGMFKVPTIMEQ"
     gene            complement(6668..7783)
                     /locus_tag="IBJ56_000261"
     CDS             complement(6668..7783)
                     /locus_tag="IBJ56_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CamS family sex pheromone protein"
                     /protein_id="HAM3416546.1"
                     /translation="MKKIIIAALGLTLVLSGCAPKLDSNDKVVQKDDSKAETGIMTKN
                     QISSNYYKTVLPYKASKSRGLVVSNIYSRYDINELESGLMRVSQNKYSPDNYLFQEGQ
                     YLDKETLEKWLDRKSDKNPNGLNPASNGNGENRNPIYLAHILEQDYLKQTDKDTVALG
                     GISIALAMNSVDYYQKEKYGDTYEQPISNSELLAQGKEMSATVLNRIRQTKGLENVPV
                     TIAIYKQGARDAVAPGNYIAYATANGDSLSNWKDIDEKNYVLPSTESAKDHKTDNDNF
                     LNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIGFTQYVTDLVGQ
                     HIPKTADLQVNISTSDGPAALITRKANEDAATAHIYD"
     gene            complement(7780..9795)
                     /gene="ligA"
                     /locus_tag="IBJ56_000262"
     CDS             complement(7780..9795)
                     /gene="ligA"
                     /locus_tag="IBJ56_000262"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HAM3416547.1"
                     /translation="MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKI
                     EEAHPEWVTPESPSKRVGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG
                     DDIAYMCELKIDGLAVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY
                     SIEVRGEAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFL
                     YAVADFGEMGVETHSAGLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYD
                     IDGIVLKLNNLEQQRQMGNTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTA
                     VLEPVRVAGTTVSRASLHNEDLITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSE
                     EPFHMPKNCPACDSELVRLEEEVALRCINPKCPAQIKEGLIHFVSRNAMNIDGLGEKV
                     IIQLFSQHLIKDVADLFFLSKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFGLG
                     IRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEEVHDLLE
                     ELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSG
                     SVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEGGLNE"
     gene            complement(9821..12016)
                     /gene="pcrA"
                     /locus_tag="IBJ56_000263"
     CDS             complement(9821..12016)
                     /gene="pcrA"
                     /locus_tag="IBJ56_000263"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HAM3416548.1"
                     /translation="MNAKELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIA
                     YLVRERGVNPYNILAITFTNKAAREMKSRIGNLMGGEAESIWISTFHSMCVRILRRDI
                     DRIGYERNFTILDGSDQLSVIKGILKEKNVDPKKFEPRGILASISNAKNELITASEYI
                     KEASGFYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVLEYYQRKFQYI
                     HVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSFEKDYPNAK
                     TILLEENYRSTKRILEAANRVIENNGNRKPKNLWTSNAEGKKIFYHKALTEKEEAAYV
                     VMKIQEEVNNSNRPLSDFAILYRTNAQSRVMEEYFMKSNMAYTMVGGTKFYDRKEIKD
                     ILAYLRLISNNEDDISLTRIVNVPKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAG
                     ISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEKTGYRAMLKNERTIEAQTRLE
                     NIDEFLSVTQNFEKENDDKTLIAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKG
                     LEFPVVFLVGMEEGIFPHSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYG
                     RPSSNQESRFIGEIPRDLLELGNENKLKADKPYAKPRMPQKTTTAYKSSGAETLGWTV
                     GDKASHKKWGVGTVVSVKGEGSGMELDIAFPSPTGVKRLLAEFAPIEKV"
     gene            complement(12081..12758)
                     /locus_tag="IBJ56_000264"
     CDS             complement(12081..12758)
                     /locus_tag="IBJ56_000264"
                     /EC_number="2.5.1.n9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenylglyceryl phosphate synthase"
                     /protein_id="HAM3416549.1"
                     /translation="MKHLFKLDPAKNLPMNDLTKLVHSGTNGFIIGGTDNVQIEAVQK
                     LYELLGETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHQELIKEMGAFI
                     PWKRVTAEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMY
                     GDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKALETAT
                     IFRKKTV"
     gene            12965..14320
                     /locus_tag="IBJ56_000265"
     CDS             12965..14320
                     /locus_tag="IBJ56_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HAM3416550.1"
                     /translation="MQENREEWGSKVGFILASAGSAIGIGAIWKLPYVAATAGGGAFF
                     LLFLVLTLLVVMPLLIAEFVIGRGSGGDAVQAYKTLAPGTKWNLLGKLGVVGASILFS
                     FYSVVGGWIITYLIKTLAGGIAGENQASLLHDFQVTTANPWISVGATILFILLNVIVI
                     SRGVVSGIEKMSKFMMPALFILFIVLIIRSLTLPGAMEGVAFFLRPDFSHFTAQTVLI
                     TLGQAFFSLSVGISVMVTYSSYLNRSTSLPQSAISVSLMNVFVSLLAGLAIFPAAFSF
                     NITPDAGPGLLFVILPSIFNQMPFGMLFFIIFLILFLFAALTSSFSMLEATVAPLMNA
                     GVNRKKASLWMGLVIVLMAIPSALSFGVWSDVQIFGLSIFDAADYLVSNIILPVGALF
                     IAIFVGYRLPRELLLKEFTTSSHFGKKVFILWLFLIKYIAPIAIIFVFLSATGLIDFL
                     F"
     gene            complement(14363..14617)
                     /locus_tag="IBJ56_000266"
     CDS             complement(14363..14617)
                     /locus_tag="IBJ56_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416551.1"
                     /translation="MKKFNSKTYQIVIISILALAVIYFVINMIATGTGLDFSLLWHWV
                     FIICFIFTTLANVREKRAIGTAIGLSGILICVTSIVLMAI"
     gene            complement(14634..14930)
                     /locus_tag="IBJ56_000267"
     CDS             complement(14634..14930)
                     /locus_tag="IBJ56_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAM3416552.1"
                     /translation="MQIEKLRGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMA
                     QRFQVAKMLHDGKTYNVIESETGASTATISRVKRSLHYGNDMYDVVFSRMTKPE"
     gene            complement(15069..16331)
                     /gene="purD"
                     /locus_tag="IBJ56_000268"
     CDS             complement(15069..16331)
                     /gene="purD"
                     /locus_tag="IBJ56_000268"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HAM3416553.1"
                     /translation="MNLLVVGSGGREHAISKKLLESNNVENVYCAPGNDGMRLDNIQL
                     VAISETDKAGLIDFAKKAEIAFVIVGPEVPLLEGVVDALEEAGIKAFGPKANAALIEG
                     SKDFAKQFMEKYAIPTAASKTFTDYAEAKAYLDERGVPIVIKADGLAAGKGVTVALEM
                     EEAVLALKDMMLEEKFGDASLKVVIEDFLAGEEFSLMAFVNGEEVYPMAIAQDHKRAY
                     EGDKGPNTGGMGAYSPVPHISETVVDEAVEKILLPAAKGMVKEGRYFRGILYAGLILT
                     AEGPKVIEFNARFGDPETQVVLPRLESDFAALIDALLHNEKPDVRFKKSGITLGVVLA
                     SAGYPEHYEKGNKLTGLNDVAEDVAIYHAGTKQDENDDFISDGGRVLLLAKEAETMTD
                     ARTLLYPEMQKLDNPNFFYRIDIGTKAE"
     gene            complement(16356..17885)
                     /gene="purH"
                     /locus_tag="IBJ56_000269"
     CDS             complement(16356..17885)
                     /gene="purH"
                     /locus_tag="IBJ56_000269"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HAM3416554.1"
                     /translation="MKRALISVSDKNGIVPFAEKLVELGVEIISTGGTKAAFEQAGVP
                     VTRIEEVTEFPEMLDGRVKTLHPAIHGGLLARRDTAEHMEAIAAHDIKPIDLVVVNLY
                     PFQETIQKSGVTLEEAIENIDIGGPSMLRSAAKNYAAVTVVVDTADYDTVLTELEEHG
                     ATTFETRQRLAEKVFRHTAAYDALIAEYLTNITGETFPEKVTLTYNRKQVLRYGENPH
                     QDAAFYTEPGTVENSISSAKQLHGKELSYNNIRDADAALKIASEFTEPVAVAVKHMNP
                     CGVGVGENIEEAYLKAYEADETSIFGGIVALNKEVDAKTAEHMSKIFLEIIIAPSFSE
                     EAFAILAKKKNIRLLTVPFAGSVKGFEKTSVNGGLLIQASDSVIEDTASYEVVTEKQP
                     TEAEMKALIAQWKIVKHVKSNAIVVGSDKQTLGIGAGQMNRIGSALIALEQAGEKAKG
                     AVLASDAFFPMDDTVEAAAKAGITAIIQPGGSIKDKESIEMANKYGISMVLTHVRHFK
                     H"
     gene            complement(17891..18457)
                     /gene="purN"
                     /locus_tag="IBJ56_000270"
     CDS             complement(17891..18457)
                     /gene="purN"
                     /locus_tag="IBJ56_000270"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HAM3416555.1"
                     /translation="MNIAIFASGNGSNFQALVDDAFIKPHVKLLVCDKPNAYVLERAN
                     THQIPVFLFEAKNYPDKEAFETEILLELRGLEIDLLVLAGYMRLIGPTLLAEFPEQIV
                     NLHPSLLPEFKGKDAIGQAIQANVSETGVTAHFVDAGMDTGPIIDQVKVPIEHAETVD
                     TLAGKIHQVEHIFYPKVIRGLIQNGGND"
     gene            complement(18454..19503)
                     /locus_tag="IBJ56_000271"
     CDS             complement(18454..19503)
                     /locus_tag="IBJ56_000271"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HAM3416556.1"
                     /translation="MAENAYSKAGVDVEAGYQVVERIKKHVARTERLGAMGALGSFGG
                     MFDLSSLHLKEPVLVSGTDGVGTKLLLAIEADKHDTIGIDCVAMCVNDILAQGAEPLF
                     FLDYIATGKTDPVKMEQIVKGVADGCEQAGAALIGGETAEMPDMYGAEDYDLAGFTVG
                     AVEKQKLITEGAVKEGDTLIGIPSSGIHSNGYSLVRKIFFKDNELTLDAEISELDVPL
                     VEELLKPTRIYVKPVLEVLKEVDVHGITHVTGGGFVENLPRMLTNDLAVKVELGSWPV
                     LPIFDVMKKYGQLSELEMYEIFNMGIGMVLAVAKADVERTLEVLVQNGEAAYVIGEVT
                     TRENDAVIFTGGTKG"
     gene            complement(19522..20949)
                     /gene="purF"
                     /locus_tag="IBJ56_000272"
     CDS             complement(19522..20949)
                     /gene="purF"
                     /locus_tag="IBJ56_000272"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HAM3416557.1"
                     /translation="MLAEVKGLNEECGIFGIWDHPNAAEITYYGLHSLQHRGQEGAGI
                     VSTDGETLKGHRNLGLLADVFKHGELDDLKGKAAIGHVRYATAGQKNLGNVQPFLFHF
                     HSSSLALAHNGNLVNAKSLRRELEEEGAIFQTSSDTEVLAHLIKRSHTGDFVEDLKVA
                     LNKVKGGFAYMLLTEDTMYAALDPNGFRPLSIGRIGDSYVVASETCAFETVGAEFVRD
                     VEPGELIIINDDGLRIEKFTENVTHSICSMEYIYFARPDSNIAGINVHSARKRSGKRL
                     AKEAFIDADVVTGVPDSSISAAIGYAEEAGLPYELGLIKNRYVARTFIQPSQELREQG
                     VRMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVQLLREAGAAEVHVRIASPPLAYPC
                     FYGIDIQTRNELIASNYSVDEICRIIGADSLEYLSEEGLVDSIGRPYPNEPYGGLCMA
                     YFNGDYPTPLYDYEAEYLASLEAEK"
     gene            complement(20934..23153)
                     /gene="purL"
                     /locus_tag="IBJ56_000273"
     CDS             complement(20934..23153)
                     /gene="purL"
                     /locus_tag="IBJ56_000273"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HAM3416558.1"
                     /translation="MPNMEPTTKEIKEQKIYQEMGLTDSEYELVCSILGREPNYTETG
                     LFSVMWSEHCSYKNSKPVLRKFPTEGKQVLQGPGEGAGIVDIGDGLGVAFKVESHNHP
                     SYVEPYQGAATGVGGIIRDVFSMGARPIAMLNSLRFGELDTPHAKYLVSEVVAGIAGY
                     GNSIGIPTVGGEIQFDPCYTKNPLVNAMCVGLIEAKDIQKGQAKGIGNPVMYVGAKTG
                     RDGIHGATFASVEFSEEGEQQRSAVQVGDPFMEKLLLEACLDVIRDHSDILVGIQDMG
                     AAGLVSSSSEMASKAGAGLELIMDDVPQRELNMTPYEMLLSESQERMLLCVKKGHVEE
                     IQALFERYGLEAVVIGQVTDDKMYKIIHHGEVVANVPVDALAEDAPVYHKPSKEPARY
                     QAFQEEESFVPVMEDVVGVWKELLAQPTIASKRHIYEQYDYQVRTDTAVVPGSDAAIV
                     RVRGTEKAIAMTTDCNSRYLYLDPEVGGAIAVAEAARNIVCSGGKPLAITDGLNFGNP
                     EKPEIFWEIEKAADGISAACLELDTPVISGNVSLYNETDGTGIYPTPVIGMVGLVEDL
                     AHITTQDFKNSGDVIFLIGETKAEYSGSELQKLQQGKISGRAPELDLTTEKKYQQLLL
                     TAIQEGLVASSHDLAEGGFGVALAEATFKAGLGADVEVPFELNQLFSESQSRFLVSVK
                     PENEAAFAQLMELEKVYRLGVVTEDDTIRVKHKEDQVTAKTTELRSIWEGAIPCLLK"
     gene            complement(23146..23829)
                     /gene="purQ"
                     /locus_tag="IBJ56_000274"
     CDS             complement(23146..23829)
                     /gene="purQ"
                     /locus_tag="IBJ56_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HAM3416559.1"
                     /translation="MKFAVIQFPGSNCDLDMLHAIRDSLGEEAEYVWHAETSLAGFDA
                     VLLPGGFSYGDYLRTGAIAKFSSIMPEVLRFAEMGKPVLGVCNGFQILTEIGLLPGAL
                     IRNNNLHFICKTVPLRVANASTMVTGLYKEGEIIQVPVAHGEGNYYCDDETLLKLKDN
                     NQIVFTYDSVNPNGSRADIAGIVNERGNVLGMMPHPERAVEEIIGGTDGLRLFESVVK
                     AWKEEQVNA"
     gene            complement(23833..24078)
                     /gene="purS"
                     /locus_tag="IBJ56_000275"
     CDS             complement(23833..24078)
                     /gene="purS"
                     /locus_tag="IBJ56_000275"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HAM3416560.1"
                     /translation="MYNVKVYVTLKKSVLDPQGVAVKDAAKSMGYEEVEDVRIGKFME
                     LKVAKSDRDIHEVLNEMCDKLLTNPVMEDYRYEIEEA"
     gene            complement(24090..24803)
                     /locus_tag="IBJ56_000276"
     CDS             complement(24090..24803)
                     /locus_tag="IBJ56_000276"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HAM3416561.1"
                     /translation="MTNELVYEGKAKRLFKTEEAGVLRVAYKDDATALNGVRKESFAG
                     KGELNNQITSLIFSHLARAGIESHFIRAISETEQLVKEVSIIPLEVVVRNVMAGSLAK
                     RLGKEEGELIPNAIVEFYYKDDALDDPFINDDHVLYLELATTSEMDIIRQAARSINKV
                     LQELFNQMNITLIDFKLEFGRDATGNILLADEISPDTCRLWDKETNQKLDKDVFRRNI
                     GNLTDVYTEVLNRLKQVQN"
     gene            complement(24884..26176)
                     /gene="purB"
                     /locus_tag="IBJ56_000277"
     CDS             complement(24884..26176)
                     /gene="purB"
                     /locus_tag="IBJ56_000277"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HAM3416562.1"
                     /translation="MLERYTRKEMGNIWTEQNRYQAWLEVEILACEAWAELGDIPKED
                     VAKIRANAKFDVDRIHEIELETRHDVVAFTRSVSESLGAERKWVHYGLTSTDVVDTAN
                     SYLLKQANEILRKDLENFIAIIGEKAKEHKYTVTMGRTHGVHAEPTTFGLKLALWYEE
                     MKRNLERFNFAADGVEFGKISGAVGTYANIDPFVEAYVCEKLGTTPAPISTQTLQRDR
                     HAEYLATLALIATSVEKFAVEVRALQKSEVREVEEFFAKGQKGSSAMPHKRNPIGSEN
                     VTGLARVIRGHMVTAYENVPLWHERDISHSSAERIILPDSTILLDYILNRFGNIVKNL
                     TVFPENMKRNMDRTLGLIYSQRVLLALIDKGLAREAAYDVVQPRAMEAWEKQVPFREL
                     VEQDATIIENLSAEEIADCFDYNYHLKNVDLIFDRLGL"
     gene            complement(26195..27319)
                     /gene="purK"
                     /locus_tag="IBJ56_000278"
     CDS             complement(26195..27319)
                     /gene="purK"
                     /locus_tag="IBJ56_000278"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HAM3416563.1"
                     /translation="MDKKFLLTNSTIGIIGGGQLGRMLALAAKAMGYRIIVLDPTADC
                     PAAQVSDEQIIADYDDKVALRELSEKADVVTYEFENIDYDALKMTQNLVSVPQGSELL
                     SITQDRILEKAYLESANINIAPYAVIVEQDEIENEIKSIGYPAVLKTAQGGYDGKGQV
                     VIHDARDIETAARLLRYGSCVLEAWIPFEKEISVVVARNLDGQIETFPVAENVHVNNI
                     LHTTTAPADVADDVHEEAEEIARKLADVLQLCGVLAVEMFVTKSGAIYVNELAPRPHN
                     SGHFTIEACSISQFTQHIRAIVGLPLVKPELLKPALMINILGQHVDAVNKQMVNYPHW
                     FVHYYGKKEAKINRKMGHVTVLADEPKAVIQDLEETQIWK"
     gene            complement(27312..27800)
                     /gene="purE"
                     /locus_tag="IBJ56_000279"
     CDS             complement(27312..27800)
                     /gene="purE"
                     /locus_tag="IBJ56_000279"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HAM3416564.1"
                     /translation="MPAVIGVIMGSTSDWDTMKKACDVLDELEIAYEKKVVSAHRTPD
                     LMFQYAEQARERGLKIIIAGAGGAAHLPGMIAAKTTLPVIGVPIKSKALNGMDSLLSI
                     VQMPGGVPVATVAIGESGAVNAGLLAAQILSITDDAITNRLQKRRATLEETVLESSDY
                     LG"
     gene            complement(28006..28530)
                     /locus_tag="IBJ56_000280"
     CDS             complement(28006..28530)
                     /locus_tag="IBJ56_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2179 domain-containing protein"
                     /protein_id="HAM3416565.1"
                     /translation="MDNGIFIVATIFIVNILYVTIYTVRLLLTMKGYRYLAALSSVFE
                     MIIYVVALSLVLDNLNNIANVLAYAIGFGVGIIVGMKIEERIALGYITVNVITKEYNL
                     DLPNQIRDLGYGVTSWLASGRDGERMMLEILTQRKNERKLYKHIIEIDNGAFIVSSEP
                     KQIHGGFWVKQVRK"
BASE COUNT         7943 a         6372 c         4794 g         9509 t
ORIGIN      
        1 tgtgttgtca ttggaaacat atctacaggc tgaacttttt tcgctacata gccgccatcc
       61 gttaagattt tcatatcacg ggctaatgtc cctggattac aagaaacata cactactttc
      121 ttcggtttca ttgctaaaat tgtttccagt aatttttcat cgcaaccttt tcgtggtgga
      181 tcgacaacta agacgtctgc tacaattcca gctttgtacc acgccggaat aacctcttct
      241 gctttccctg tctcaaaagt agtattcgct aattcattga gttctgcatt tgcacgagca
      301 tcttgtatcg cttgatccac aatttctacc ccgtagacat gcttggcttt tttcgcgaga
      361 caaagagaaa tagaaccaat gccgcaatag gcgtcaatca ctgtttcttc tcctgttaac
      421 tcagccgcat cgattgcttg ttgatacaaa acttctgttt ggattgggtt tacttgataa
      481 aatgaacgag ccgaaattgc aaatcgaatg ccatgaatcg tatcctcaat gatatctttt
      541 ccccaaagtg ttttcgtacg atctccaaaa atcacatttg ttttatgtgg attaatattt
      601 tgaacaatcg aggttaattc caattgttcg accaattccc gtacgatttc ttctttaaat
      661 ggcatacgtt cttttgttgt tacaaggaca atcattaact gtccagttgt atgcgcaaat
      721 cttgtcataa tatggcggat atcgcctttt cctgtttgtt catcataagg ctctgttccg
      781 tatttagcta ggatttcacg tgttttttga acagcaaaat caccttgctc attatgaatt
      841 aaacaagtgg acatgtcgat aatggcatgg cttctttttt ggtaaaaacc tgctgttaac
      901 ttaccattaa caaatcctac tggtacttgt gatttattcc ggtagcgcca cgggttttcc
      961 atgcctagtg tttcaggaac ttctacgttt agtttgccaa tacgtttcat cgtttcttcc
     1021 acttgatttc gtttgaattc aagctggcca tcgtagctta agtgttgcaa gctacaaccg
     1081 ccacatttgg aataaaccgc acatggaggt tctacgcggt ctgcactaac cgattcaata
     1141 gtctccatcc gagcaaagcc gtaattttta ttgagcttta ttattttagc tgtcactttt
     1201 tcgccaggta acgtatttgg aatgaaaagt gggtatccgt caattttgcc aaccccactg
     1261 ccgtcatgcg ttaaatcttc aatagtaagt tcaatggatt ggttcttttt taaaagggat
     1321 gcttccaaag tcccttgccc ctctctttgc tttacttaat aatatattcg atgccgattg
     1381 gctctttaat tactgcttct tcttgctctt taaaaacaag catggtattt ttctgtaacg
     1441 taaaatcata aataaatgtt tttggataga tagtgacatt tttattcgta gtcaacgctt
     1501 ttgtgttatc tgtaatagtc gtttcttctg gaatctggct attaaaaata ccagctgcga
     1561 cttcagcatc atcacttgaa taacttgtct ttagagatac tttaatatta ttgtttgttg
     1621 tgtcttctat ttttacaggt gttttttctg tttgtacaga acgttcacca cttgtaattt
     1681 catagtttgc gaattttttc tggatagttg ttgttgggta acgatatttt gtattagtaa
     1741 tatactcaga aactttcttc gcttcaatac gaagtcgata tgctttgata cctttataac
     1801 gattatcgga agaagctaat tcatttaaaa tttcttcatt agttatctct aaaatcaaat
     1861 ccccatttgt tgctatcgtt gtgtttgtat ttgctgcagg gatagataaa ataatattat
     1921 cttgtattgg aatttgcatt tggttgttta tccatacttt attactttca attagctctg
     1981 ttttacttac ttttggagcc tgttcttctg catccacttg ccaaaagaaa aaaacagccg
     2041 ctgcgatagc aatgataaga acgattatta tcatcgtgaa ccttttaaat tgatgtccac
     2101 ttgtcatatc gcattcacct catttcttgt cagaatacct attatacttg ttttgctcaa
     2161 ataagacaaa tttctaacaa taattacatc ctttttacta tgttgcaatt aggacgttta
     2221 ggctaaagaa aaaaactacc aaactgggca gtttttagct attttctttt atgaataaat
     2281 cagttgcggg gatgtcatct acacttgcga aaaattcgat atgttgtctt aaattgcgga
     2341 attccattgg cgtttcccca ccaagctccc cgtcaaggtt aattaacatc ttatcttctg
     2401 agttaacaat cactttttcg gattttacat aaataacatt aggttcttta atatgatctc
     2461 ctcgaagcgc cagtgtgact aaacggataa attcggctaa atttactttt ttcacgataa
     2521 taagtgaaaa tttaccgtcg tctaacttgg catctggggc gattttttca aagccaccaa
     2581 tggaattagt taatcctaat aggaaaaaca tcacttcccc ttcaaatacg ccttgatcat
     2641 attctacttt tactttggtt gcttttaagg atggtaacat ttcgatacct tttaaataat
     2701 aagcaagttg accgagcatt gtttttagac ggctaggaac atcgtaagtg agttctgtta
     2761 aacgacctcc gccacctata ttaataaaat atgtttcatt tgctttacct atatccattg
     2821 ctacactttg accagctgct ataatcttcg ttgctttaat cacgtctcta ggcacatgta
     2881 aggctcttgc aaaatcattg gttgtcccgg ttggtataat ccctactttg gggcgatatt
     2941 ctttttcagc aataccgtta ataacttcat taatggttcc atctccgcca gctgctacaa
     3001 ctaaatcgaa tcgatctctt acagcttctt ccgcagcatg tttggcatca tctggttctg
     3061 cagttgttgc gtgcgcagat gttacatagc ctgcttgctc taatatcgaa aggacatctg
     3121 caagattttt cttgatgatt tctcttccag atgtgggatt ataaataact cgagcgtgtt
     3181 tttgcattat gttcgtcctc tccttcactc aaacagcgtt gttcaaaaga aaagcgcgtt
     3241 ttgacacatg atagtaatat tatagcaaat ttaactataa attcctaata aatataaaag
     3301 cagcgaggca aaatacctca ctgctacatt gtttaacgtt tgttcatttc ttctagtaat
     3361 aatttattaa ccattggtgg gtttgcttgc cctttggtta ctttcattac ttggccaact
     3421 aagaatccaa ccgcacgatc cttaccattt ttgaagtcga caatagattg ctcattgtta
     3481 tctagaattt cgctaatgat agtgcgtaaa gctccttcat cggaaatttg gacaagtcct
     3541 ttgtctttta ctacttgctc tgcatcgcca ccattttgcg ctaattcgcg gaaaactttt
     3601 ttagcgattt tagaagaaat agtaccagct tcgattaatt taatcatgcc agcaaggttt
     3661 tcaggagtta gtcctgtttc atgaagttct ttttgttctg cgtttaagta ggcagaaact
     3721 tcgcccatta gccagtttga tgcttgtttc gcatctgctc cagctgcaag agttgcttca
     3781 aaaaagtcag acatttcttt tgtaagcgtg agaaccattg catcatatgc tggcaaacca
     3841 agatcgttaa tgtaacgaat ttgacgtttg tctggaagtt caggaatttc tgcacgaata
     3901 cgttctttcc aagcgtcatc aataaataaa tctactaaat ctggttctgg gaaataacga
     3961 taatcgtcgg atccttcttt aattcgcatc aaagaggttt ttccagttgc ttcttcaaaa
     4021 cgacgagttt cttgttcgat aatcccgcca gacttaagca cttcagcttg gcgtttttct
     4081 tcatattcga tacctttacg tacgttgttg aaggagttta ggtttttaag ttctgttttt
     4141 acgccaaatt cttcttggcc gattggtcgg atagaaatat tggcgtcaca gcgcattgaa
     4201 ccttcttcca ttttcacatc ggatacgcca gtgtattgaa tgatagattt taatttttct
     4261 aagtaggcat aagcttcttc tgcagaacga atgtctggtt ctgaaacgat ttcgataagt
     4321 ggtgttcctt gacggttaat atccactaac gaataaccat gagaagtatg ggtatttttc
     4381 ccagcatctt cttctaaatg aagacgagtg atgccaattt ttttcttttt accgccaact
     4441 tcgatttcaa tccagccatg ttcgccaatt ggtttatcga attgagaaat ttggtatgct
     4501 ttcggattat ctggataaaa atagttttta cggtcgaatt ttgtatgttt agcaatttca
     4561 cagttaatcg ccatagccgc tttcatacca aattccactg cacgtttatt taaaactggt
     4621 aaaacacctg gcatacctaa gtctaccacg gttgtatttg tatttggttc tgctccaaaa
     4681 tgagctggcg cagaagaaaa tatttttgaa ttggttttta actctacgtg aacctcaagt
     4741 ccaataactg tttcaaaatt cattgctacg cctcctataa gtttggtttt tctttatgga
     4801 atgttgtttc ttgttcaaaa gcatgcgcta ctttgtaaag taaggattct tcaaagtagt
     4861 taccgataat ttgcaagcca actggtaaac catccgagaa tccacaagga acagaaatag
     4921 ctggtacgcc tgctaagtta attggaacag tcaaaatatc attggaatac attgtaattg
     4981 gatcattaat cattccgtca attttaaatg ctgttgtcgg ggaactaggt ccgataataa
     5041 catcatagtt ttcaaataca ttaacaaagt cttgcttaat taacgtacgc gcttgttgtg
     5101 cttttttgta gtaagcatcg taataaccag agcttaacgc atatgttcca agcataatac
     5161 gacgttttac ttcatcgcca aagccttcag aacgagtttt tgtataaagt tcttctaaag
     5221 tagttgcgtt tggagaacgg tatccgtaac gaacgccgtc aaaacgagat agattagaag
     5281 aagcttcact agatgctaaa atgtaataac ttgctacacc gtattcagaa tgaggtaaag
     5341 aaacttcatc ccaagtagcg cccagttttt cgagtgtttt aagcgcatct aatacagctt
     5401 gtttgacacc aggatctacg ccttcaccaa gatactcttt tggaacaccg atgcgtaagc
     5461 ctttaatatc acctgttaag ctatctgaga aacgttctac tggttggtta atcgatgtag
     5521 aatcattcgc atctaaacca gaaatagctt ctaataaata agcgttgtct tctacatttt
     5581 ttgtaattgg gccgatttgg tctaaagaag acgcaaaggc aattaaacca aaacgagata
     5641 cacggccata tgtaggtttc attccgacta ccccacaaaa agctgctggt tggcgaatcg
     5701 atccaccagt gtcactacca agcgagaata aaacttcgcc tgctgcaact gcggatgcac
     5761 taccacctga agaaccacca ggaactcttg ataaatccca tgggttatgt gttttgtgga
     5821 aatacgatgt ttctgtcgaa gatcccatcg caaattcatc catgtttaat tttccgatat
     5881 taattgtttg cgcatttttt aatttagaaa cgacggtcgc atcataaatt ggatcgaagt
     5941 tttctaaaat tttacttgct gctgttgtac gtaagttttt tgtcacgata ttatctttaa
     6001 tcccaattgg aagaccagaa agcatgttgt ttggatctat gcccgcatct ccaagttctt
     6061 ctgcgacacc aaatgctgcc tctttattta aagtaataaa agaaccaact ttgtcctcta
     6121 cagattcaat tcggttgaaa gattctgata ctaaatcgaa tggtgaaatc tcttttttaa
     6181 ctaatttatc atgtagttct tttactgaaa aatcaaataa acccaaaata ttttccctcc
     6241 ttagcctatt tattgttcca taattgtcgg tactttgaac atgccatctt gttcatcagg
     6301 cgcatttttt agtacttctt tgcgatccaa cccttttgtt gccacatctt cacgtaatac
     6361 gtttgatacg tcgattgcat ggctggtagg ttctacattc gttgtatcta atgtatttaa
     6421 ttgctctact agctcaataa ttttaccaag ctgaccagcg aaggctgttg cttctgtttc
     6481 tgatacttct agtttggcaa gatttgctac tttttctact gtttcttttg atatatttga
     6541 caaaatgcca tcctcctttt tagtggtact tactacgcgg tagtgcttcc cgcctgttaa
     6601 aaatgggaag aactgtcctc tcctgcataa ttatacaaca ggaaagaaca attcgcattg
     6661 ttttttatta atcgtaaatg tgagcagttg ctgcatcttc atttgctttt cttgtaatca
     6721 atgcagctgg accatcagat gtagaaatat tgacttgcaa atcagctgtc ttcggaatat
     6781 gttgtccgac taaatccgtc acatactgtg taaagccgat aatctctgct tcaccataaa
     6841 attgtaacgg aatatcaatg tttaattctg ctagttgacc gtcttcatat ctaccacgac
     6901 caacgacacc tgtaaagttt ggataatagt cttcaattgc ttttttgaaa ttcaagaaat
     6961 tgtcattatc tgttttgtga tctttagcag attcagttga tggtaaaaca taattttttt
     7021 catctatatc tttccaatta gaaagactgt ccccatttgc agttgcatag gcaatgtaat
     7081 ttcctggagc taccgcatca cgagctcctt gtttgtaaat ggcaatcgtt acaggaacat
     7141 tttctaaacc ttttgtttgg cgaattcgat ttaacacagt ggcagacatt tctttccctt
     7201 gtgctaataa ttcactatta ctaattggtt gttcataggt gtctccgtat ttttcttttt
     7261 ggtaataatc gaccgaattc atcgcaaggg caatagaaat cccaccaaga gcaactgtat
     7321 ctttgtccgt ttgttttaaa taatcttgtt ctaaaatatg tgctagatag attggattac
     7381 gattctcacc gttaccatta ctggctgggt ttaaaccatt cggattttta tcgctttttc
     7441 tatctaacca tttttctaac gtttctttat ccaaatattg cccttcttgg aaaagataat
     7501 tatctgggga gtatttattt tgcgaaacac gcattaaacc agattctaat tcgttaatat
     7561 catatcgtga ataaatattc gatacgacta gtccacggga tttgcttgct ttgtatggta
     7621 gtacggtttt gtaataattg gatgagattt gattttttgt catgatgccc gtctctgctt
     7681 ttgaatcatc tttttgtacc actttatcat ttgagtcaag ttttggggca cagccagaga
     7741 gcacaagcgt taagccgagc gctgctatta tgattttttt cattcgttta atccaccttc
     7801 gtctggtaag tactctatta agtcttcttc tgaccaaata ggaatggcta gttcttccgc
     7861 tttggctaat ttagaaccag catcactgcc agctacaaca acatccgttt tcttactgac
     7921 gcttccagaa acatttcctc cgagggattc gattaatgct tttgcatcat tccgcgttaa
     7981 cttttctagt ttcccagtta agacaacggt tttacctgcg aaaacaagtt cttcctcgga
     8041 catatcttct agttttggcc ctgtataggt catattgacg ccagcccttt ttagttcttc
     8101 taataaatca tgtacttctt cattcgcgaa ataagtgaca atactgtctg ccattttttc
     8161 accaatgtcg ttaatacttg tcagtgtttc tttgtctgct actttcaaat tatccattgt
     8221 atcgaaatga atggcaagtg atttggcggc ttttgcacca acatggcgaa tgcctaagcc
     8281 gaaaagtaat ttttcaagcg agttttgttt acttgcttgg atggatgcca gtaaattagt
     8341 taccgatttc tcacccattc tttctaattc taacagtttc tccttcgaaa ggaaaaacaa
     8401 atctgctaca tctttaatta aatgctgtga aaatagctgg ataattactt tttcgccgag
     8461 gccatcaatg ttcatcgcat ttctggagac aaagtggata agtccttctt ttatttgagc
     8521 tgggcattta ggattaatac atcttaacgc cacttcttct tctaaccgaa ccaattcact
     8581 atcgcacgct ggacaatttt ttggcatatg gaaaggttct tcacttccgc tacgtttttc
     8641 ggtgatgctt ttaatgactt ctggaatgat atcgccagct tttttgatta aaacggtgtc
     8701 gccaatgcgg atatctttct ctgtaattag gtcttcatta tgaagcgaag cgcggctaac
     8761 ggttgtccct gccactcgca ctggttctaa cacggcggtg ggagttatca caccagttct
     8821 accaacattt aattcgatat cgagtaactt agttggtact tcttcggctg ggaatttata
     8881 agcaatcgac caacgaggcg atttaacggt gtttcccatt tggcgttgtt gctctaagtt
     8941 gtttaatttt aaaacaatgc cgtcaatatc gtatgctaat ccggcgcgtt tttctgtcca
     9001 ttcttcaatg tacgcataaa cttcttctaa actgttgcaa agtcggcgtt ctttattgac
     9061 tttaagacca agtgtttcaa gcatatctaa gcctgcgcta tgagtttcaa cgcccatttc
     9121 accaaaatct gctactgcat aaaggaagat atcgagattt ctcgacgctg cgatttttgt
     9181 gtccaattgt cgaagcgagc cagccgcagc atttcgtgga ttggcaaata acatctggcc
     9241 ttcttcttcg cgaatttcat ttagtttttg gaaggagcgt tttggcatga aagcttcacc
     9301 gcgaacttca atggaatagt ccttttgaag tttcattggg atggagcgaa tcgtacgcaa
     9361 gttagcagta atgtcttccc caatggttcc atcaccacga gtagcacctt gtttgtattt
     9421 accattttcg tattgaaggg atactgctag tccgtcaatt ttaagttcgc acatataagc
     9481 aatatcatcg cccactttgt cgcgaattcg acggtcaaag tctgccaagt cttcttggtt
     9541 aaaagcgttg gcaagactta acatcggcgt gtcatgtgct acttttttaa aaccttctaa
     9601 aacttccccg ccaactcgtt ttgacggaga ctcaggtgta acccactcgg gatgcgcttc
     9661 ttctatttta agtaattctt gcatcttctg atcgtattcg gcatcttcta ctgttggatt
     9721 atcaattaca taataatcat agctgtactg atcaagtatg ttgattagtt cctcatacct
     9781 ttttttatca gccatcattc ttcacctgct ttttccaaat ttatactttt tcaattggcg
     9841 caaattctgc gagcaatcgt ttgacgccag ttgggctcgg gaatgcaata tctagttcca
     9901 ttccgctacc ttcccctttg acactgacga ctgttcctac gccccatttt ttatgactgg
     9961 ctttatcgcc gactgtccaa ccaagcgttt ctgctccaga ggatttatac gcagtagttg
    10021 ttttttgtgg catacgcggt ttggcatatg gtttgtctgc ttttaatttg ttttcattac
    10081 ctaactcaag taagtctcga ggtatttctc caataaaacg agattcctga ttagaggacg
    10141 gacgaccata aagcatccgc gaataagcgc tcgttaggaa aagttcttct tccgctcgag
    10201 taataccaac gtaagcaagt cgacgctctt cttccatttc atcttcctca taaatggctc
    10261 tagaatgtgg gaaaatccct tcttccatcc caaccaaaaa gacaactggg aattctagcc
    10321 ctttggcaga gtgaagtgtc atcagtgtga cagccccgtt ttgttcttca ttgtcttctt
    10381 ctaacttatc gacgtcagca acgagtgcta aatcagttaa aaaggcaatt aacgttttat
    10441 cgtcattttc cttttcaaag ttttgtgtta cagataaaaa ctcgtcgata ttttctaaac
    10501 gtgtttgcgc ttcaatggtt cgttcatttt ttagcattgc gcggtagcct gttttttcaa
    10561 ggatttcttc tacgagttcg gttacggata agaaatcttg catttgcgtg aagccgcgaa
    10621 tcaaatcatg aaacgcaact aagtctttgc ttattttagg cgaaattccc gctagttcga
    10681 tgcggttaag gacttcaaac aagctcaaat catatgtggt cgccacatta tttagtttat
    10741 ctaaagtacc tggtccaacg ccgcgttttg gaacgttaac gatacgtgtc aaactaatat
    10801 cgtcttcatt attactaatc agacgtaaat acgccaaaat gtctttgatt tcttttctgt
    10861 catagaactt cgtgccgccg accatcgtgt atgccatatt tgacttcatg aaatattctt
    10921 ccatgacacg ggactgggcg ttagttctat aaagaatcgc aaagtcagaa agtggtcgat
    10981 tcgagttatt tacttcttct tgaattttca taactacata ggccgcttct tctttttccg
    11041 ttaatgcttt atgataaaaa atctttttcc cttctgcgtt acttgtccaa agatttttcg
    11101 gtttacgatt accattattt tcgataacac ggtttgccgc ttctaaaata cgttttgtcg
    11161 aacggtaatt ttcttctagc aaaatggttt tcgcattggg gtaatctttt tcgaaggaca
    11221 tgatgttact aatgtccgcc ccgcgccaac cataaataga ttgatccgag tcacctacga
    11281 cgcataagtt tttgaaacga gaagcaagct gtttcacgag taaatactgc gcgtggttgg
    11341 tatcttggta ctcatccacg tgaatatact gaaatttacg ttgataatat tctaaaacat
    11401 cgggcacacg ttcaaataat tgaatggtga ccataattaa atcatcaaaa tcgagtgctt
    11461 gatttttctt aagtttcttc tcgtattttt catagacttc gccgaccatt ttgtcataga
    11521 aaccacttgc ttctttaata tattcgcttg cagttatcag ttcatttttg gcattgctaa
    11581 tagaagccaa aatcccccgt ggctcaaact tcttagggtc aacattcttt tctttcaaaa
    11641 tgcctttaat aaccgataat tggtcactgc catctaaaat agtaaaatta cgttcatagc
    11701 caatccggtc aatatcgcga cgtaaaattc gtacgcacat cgagtgaaaa gtagatatcc
    11761 aaatagattc tgcttctccg cccattaaat tgccaatccg tgacttcatc tcgcgagccg
    11821 ctttgttcgt aaacgtaatc gctaaaatat tataaggatt tacaccacgt tctctcacta
    11881 aataagctat ccgatgggtc aaaactcgtg ttttcccact tccggcacca gccataatta
    11941 ataaaggtcc ttctgtactt tctactgctc ttcgttgttc cggattcaat ccgtccacta
    12001 attcttttgc attcaattgc attctcctat acaccaccat acaaacattt gttcttattt
    12061 tatcatacta cactttataa tcaaaccgtt ttcttcctaa aaatagttgc ggtttctagt
    12121 gctttttcta aatcttcata aataatattg ccaacaataa tcgtatccgc atattttgcc
    12181 atttcagcag cttgttcttt tgaacgtatt ccgcccccat accaaaattt tgtattactt
    12241 aatgcggcac ttgcttttct tacaacctct ggatctccgt acatgccgct atattcgaca
    12301 taaaaaatgg gcagatgaaa tatattctct gctaaccgcg cataggcaac gatgtcttcg
    12361 tccgttaaat cggtcttcgc ttctgttaaa tgagccactt ttgcatcttt atttaaaata
    12421 acgtagcctt ctgctgtgac tcgtttccaa ggaataaatg ctcccatttc tttgattaac
    12481 tcctggtgta aaccgtgtgt ccatttacta ttttctgtat tcaacactac tggaattaaa
    12541 aaatggtctg cttcaggtaa aatcatggat tcgttgctta tttcaaggaa aatcggcaag
    12601 tccgtttcac ctaataattc gtagagcttt tggactgctt cgatttgtac attatccgtc
    12661 ccaccaataa taaatccatt ggttccagaa tggacgagct tcgttagatc attcattggt
    12721 aaattctttg ctgggtctaa cttgaataaa tgcttcattt gctcctccaa gtctctataa
    12781 tgggatatct tattatagca ttagttacat ttcatcgcac ccttacgacc aaaaatttta
    12841 acttttttta agcttttttt accagttgct gttgggatag cttttatttt atggtatgat
    12901 gaggaaaatt tgattttatt aagacttctg agtatttaca tagaaaaaag gaaatgggga
    12961 tattatgcaa gaaaacagag aagaatgggg ctcaaaagtc gggtttatat tagcatccgc
    13021 tgggtccgca ataggaattg gcgcgatttg gaaactgcct tatgtggctg caactgcagg
    13081 aggtggcgca tttttcttat tgtttttagt tttaacttta ctcgttgtga tgccactttt
    13141 aattgcagaa tttgtgattg gacgaggctc tggcggagat gctgttcaag cttataaaac
    13201 actcgcgccc ggaacaaagt ggaatttact tggaaaatta ggcgttgtag gcgcaagtat
    13261 tttattttcg ttttatagcg tagttggtgg ttggattatc acttacttaa ttaaaacact
    13321 tgctggcggg attgctggcg aaaatcaagc aagtctgctg catgatttcc aagtgacgac
    13381 agctaacccg tggatatcag ttggcgcaac gattctcttt attttactaa atgtcattgt
    13441 tattagccgc ggagttgtta gtggaattga aaaaatgagt aagtttatga tgccagctct
    13501 atttatttta tttattgttt taattatcag gtccttaaca ctacctggtg cgatggaagg
    13561 tgtcgcattt ttcttacgtc cagattttag tcatttcaca gcgcaaacgg ttcttataac
    13621 gcttggtcag gccttcttct cactcagtgt ggggatttca gtaatggtga cctatagttc
    13681 ttatttaaat cggtcgacta gtttaccgca gtctgccatt tcggtttcgc ttatgaatgt
    13741 gtttgtgtcg cttcttgcgg gattggccat tttcccggca gcattttcgt ttaatattac
    13801 accagatgcg ggacctggat tgctattcgt tattttacct tcgattttca atcaaatgcc
    13861 ctttgggatg ttgttcttta ttattttctt gattttattc ttattcgccg cattaacctc
    13921 tagtttctcg atgcttgaag caacggttgc gccactgatg aatgcgggtg ttaatcgtaa
    13981 aaaagcaagt ctttggatgg ggctcgtgat tgtcttgatg gctattccaa gtgcgcttag
    14041 ttttggcgtt tggagcgatg ttcagatttt cggactaagt atttttgatg ctgccgatta
    14101 tcttgtgtcg aatattatct tgccagttgg tgctttattt atcgcaattt tcgttggtta
    14161 ccgattacct cgtgaattac ttttaaaaga atttaccaca agcagccatt ttggaaaaaa
    14221 agtgtttatt ctttggctct ttcttattaa atatattgca ccaatcgcga ttattttcgt
    14281 cttcctctcc gcaactggtt taatcgattt tctgttttaa caaaaaaagc aatccgctaa
    14341 gtttttagcg agattgcttt tcttatattg ccataaggac aatgcttgtt acacaaatca
    14401 agattccact aaggccaatc gccgtaccaa ttgctcgttt ttctctaaca ttagcaagtg
    14461 tcgtgaaaat aaaacaaata ataaagaccc agtgccacag taaagaaaaa tcaagccccg
    14521 tgccagtggc aatcatatta atcacaaaat aaataactgc aagcgcaaga atagagatga
    14581 tgacaatctg ataggtttta ctattaaact ttttcaatat aatccctaca atcttattct
    14641 ggcttcgtca ttcttgaaaa tactacatca tacatatcat taccataatg aagtgaacgt
    14701 tttacacgtg aaatagttgc tgtacttgcc ccagtttcag attcaatcac attatatgtt
    14761 tttccatcat gaagcatttt tgctacttgg aaacgttgag ccatggactg tatttcattc
    14821 actgtacaaa catcatcaaa aaaagcataa cattcttcta aattctcgag cgttaaaatc
    14881 ccttggaaga attcatccaa tccttgtcca cgcaacttct ctatttgcat atctttacct
    14941 ccaaataatc tcatatatcc tactttcata ttttaacgta ccaacgcgta aaacacaaac
    15001 gtttctcttc acttaatgaa caaaaaaagt actatctagg aatttatcct tgagatagta
    15061 cttttcaatt attctgcttt tgtgccaata tcaattcgat aaaagaaatt cgggttatct
    15121 agtttttgca tttctggata aagtaatgtg cgtgcatcag tcatcgtttc tgcttctttt
    15181 gctagtagca agacgcgtcc accatcagaa ataaaatcgt cattttcatc ttgttttgta
    15241 cctgcatgat aaatcgctac atcttctgca acatcattta gaccagttaa tttgtttcct
    15301 ttttcataat gctctggata accggcgctt gctaggacaa ctcctagcgt aatccctgat
    15361 tttttaaagc gcacatctgg tttttcgtta tggagtaaag cgtctatcag tgctgcaaaa
    15421 tcactctcta aacgaggcaa aacaacttgt gtttccggat caccaaagcg tgcgttaaac
    15481 tcaattactt ttgggccttc tgcggttaag ataagcccag catagagaat tccgcggaaa
    15541 taacgacctt cttttaccat tccttttgca gctggaagaa gaattttttc gacagcttcg
    15601 tctactactg tttcagaaat atgtggtacc ggagaataag ctcccattcc gccagtattt
    15661 ggtcctttat cgccttcata agcgcgttta tgatcttgcg cgatagccat tggataaact
    15721 tcttccccat ttacaaacgc catcaatgaa aactcttctc ccgctaaaaa gtcctcgata
    15781 acgaccttga gagatgcgtc accgaatttt tcttctagca tcatatcttt taatgcaaga
    15841 actgcttctt ccatttctaa cgctacagtg actccttttc cagcagcgag tccatctgct
    15901 ttaatgacga ttggcactcc tcgctcatcc aagtatgctt tcgcttccgc ataatcggtg
    15961 aaggtttttg atgctgcggt tggaatagca tatttctcca taaattgttt cgcaaaatct
    16021 ttgctgcctt caattaatgc tgcatttgct tttggaccga atgctttaat tccagcttct
    16081 tcgagagcat cgacaacgcc ttctaaaaga ggcacttcag gcccaacaat aacaaaagca
    16141 atttctgctt ttttagcaaa atcaattaaa ccagctttat ccgtttcaga aatagctacg
    16201 agttggatgt tgtctaaacg cattccgtcg tttcccggag cacagtatac attttcgaca
    16261 ttgttggatt ctaataattt tttactaata gcatgttctc taccaccgct accaactact
    16321 aataagttca tttatttaca cgtccttttt gaggattaat gtttgaagtg tcgtacatga
    16381 gttagaacca tggaaatacc atatttgttt gccatctcaa tggattcctt gtctttaatg
    16441 gatccaccag gctgaataat cgctgtgatt cccgcttttg ccgcagcttc gaccgtatca
    16501 tccattggaa aaaaggcatc cgaggcaagt acagcacctt ttgctttctc gccagcttgc
    16561 tcaagtgcaa ttaacgcgga accgattcga ttcatttgtc ctgcaccaat tccaagtgtt
    16621 tgtttatcag atcctactac tatcgcattg gattttacat gtttcacaat tttccactga
    16681 gcaattaatg ctttcatttc cgcttctgta ggttgttttt ccgttactac ttcataactc
    16741 gctgtatctt ctataacaga atcgctcgct tgaataagaa gtccaccatt tacagatgtt
    16801 ttctcgaaac cttttacgga accggcaaac ggaacagtta acaagcgaat atttttcttt
    16861 ttcgctaaaa tggcaaacgc ttcttcagag aaacttggcg caataataat ttctaagaaa
    16921 attttgctca tatgttcggc tgttttcgca tccacttctt tatttaaggc aacaatccct
    16981 ccaaaaatag acgtttcatc cgcttcataa gctttcaaat aagcttcttc aatattttct
    17041 ccaacaccaa cgccgcatgg attcatatgt tttactgcaa ccgcgaccgg ctctgtaaat
    17101 tcacttgcaa ttttaagtgc tgcatctgca tcccgaatat tgttgtaaga taactcttta
    17161 ccgtgcaact gtttcgcgga actaattgaa ttttctaccg tgccaggttc tgtataaaaa
    17221 gcggcatctt ggtgaggatt ttcaccataa cgcaaaactt gttttcgatt gtaagttaat
    17281 gttacttttt ctgggaaagt ttctccagtg atgttcgtta agtattctgc aattaaagca
    17341 tcataggccg ctgtgtgccg aaaaactttc tcagctagac gttggcgcgt ttcaaaagta
    17401 gttgcgccgt gttcttctag ttctgtaagt accgtatcgt aatccgctgt atcaactaca
    17461 acagttaccg ctgcataatt tttcgcagct gagcgtaaca tcgaaggtcc gccaatatca
    17521 atattttcaa tcgcttcttc taaagtaaca ccagattttt gaatcgtttc ttggaaagga
    17581 tataaattta caacgactaa atcaattggc ttgatatcgt gtgccgcaat agcttccata
    17641 tgttcagctg tatcgcgtct tgccagtaac ccaccatgaa ttgctggatg aagtgtttta
    17701 acgcgaccat caagcatttc tggaaattca gttacttctt ctattcttgt taccggtacg
    17761 ccagcttgtt caaatgccgc ttttgttcca cctgtcgaaa taatttctac tccaagttct
    17821 actaattttt ctgcaaatgg cacgatgccg tttttatctg acacactaat aagcgctctt
    17881 ttcatgataa ttaatcgttc cctccatttt gaattaatcc tcgaatcact tttggataaa
    17941 aaatatgttc tacttgatga atttttccag ctaaagtatc tacagtttcc gcatgttcaa
    18001 tcggtacttt cacttgatca ataattggtc cagtatccat tcccgcatcc acaaagtgcg
    18061 ccgtgacacc agtttctgaa acattcgctt gaatcgcttg accaattgca tcttttcctt
    18121 tgaattcagg taacaacgat gggtgcaggt tgacaatttg ctcggggaat tccgctaata
    18181 aggttggtcc aatcaaacgc atatatcctg ctagcactaa caaatcaatt tccaacccgc
    18241 gaagttctag taaaatttct gtctcaaaag cttctttatc cggataattt ttcgcttcaa
    18301 aaaggaacac cggaatctga tgtgtgtttg cgcgttctaa aacataagca tttggtttat
    18361 cacataccag tagtttcaca tgaggcttaa taaacgcatc atccactaaa gcttgaaaat
    18421 tcgaaccgtt acccgaagca aaaatggcta tattcatcct tttgtgcctc ctgtgaaaat
    18481 aaccgcatca ttttcacgtg tcgtaacttc tccaataaca taagccgctt ccccgttttg
    18541 aacgagtact tctaatgttc tttccacatc cgctttcgca actgccaaca ccataccaat
    18601 gcccatattg aaaatttcat acatttcaag ttcgctcaat tggccgtatt tcttcataac
    18661 gtcaaaaatc ggcaacaccg gccacgaacc aagctccact ttgacagcta aatcatttgt
    18721 taacatccgc ggtaaattct ctacaaatcc gccacccgtc acatgcgtaa ttccgtgcac
    18781 atctacctct ttcaatactt ctaaaactgg cttcacataa atccgtgtcg gtttaagtag
    18841 ctcttccaca agcggtacat ctagttcact gatttccgca tcgagtgtca attcgttatc
    18901 tttaaagaaa attttacgca caagggagta accattacta tgaattccgc ttgatggaat
    18961 accaatgagt gtatctcctt ctttgactgc gccttctgta attagcttct gtttctctac
    19021 agccccaaca gtaaaaccag ctaaatcata atcttccgcg ccgtacatat caggcatttc
    19081 agcagtttcg ccgccaatta aagccgcacc agcttgttca caaccgtcag ccacgccttt
    19141 aacaatttgt tccattttca ctggatctgt ttttccagta gcgatataat ctaagaaaaa
    19201 taatggctcg gcgccttgag ctaaaatgtc attcacacac attgccacgc agtcaatccc
    19261 gatggtatca tgcttatctg cttcaattgc caaaagtaat tttgtcccaa caccatccgt
    19321 accagaaaca aggacaggtt cttttaaatg caaactactt aagtcaaaca ttccaccaaa
    19381 tgaaccaagt gcccccatcg cgcctaatcg ctctgttcta gccacatgtt ttttgatacg
    19441 ttctacaact tgatagccag cttctacgtc cacgcctgct ttactatatg cattttctgc
    19501 cattcgattt gtcactcctc attatttttc tgcttctaag ctcgctaaat attccgcttc
    19561 ataatcatat aaaggggttg ggtaatcgcc gttgaaataa gccatacaaa gtcccccgta
    19621 aggttcattc ggataaggtc tgccaatgga atctactaaa ccttcttcac tcaaatactc
    19681 taaagaatca gccccaataa tccgacaaat ttcatcaaca gaataattag aagcgattaa
    19741 ttcatttcgc gtttggatat caattccata aaaacaagga taagcaagtg gtggagaagc
    19801 gattcttaca tgaacttccg ccgctcctgc ttcacgtaaa agctggacaa tgcgtttact
    19861 tgtcgtcccg cgaacaatcg aatcatcaat catgacaacg cgttttcctt ccacaacccc
    19921 gcgcacggca gaaagtttca ttctaacgcc ttgttcccta agttcttgtg atggctggat
    19981 aaaagttctt gccacatatc tatttttgat gagaccaagt tcgtaaggaa gaccagcttc
    20041 ctccgcataa ccaatcgctg cagaaatact ggaatctggt acacctgtaa ccacatctgc
    20101 atcaataaaa gcctcttttg ctaatctttt cccagaacgt tttcttgccg agtggacatt
    20161 aattccagca atattagagt caggtcgcgc aaaataaatg tattccatac tgcaaatcga
    20221 atgcgtcaca ttttccgtga atttttcaat tcgaagcccg tcatcattaa taataattag
    20281 ttcacctggc tccacatcgc ggacaaactc agcgccaacc gtttcaaagg cacatgtttc
    20341 cgaagcaact acgtaagaat caccaatgcg acctatcgaa agcggtctaa aaccattcgg
    20401 gtcaagcgcc gcatacatcg tgtcttccgt cagaagcatg tacgcaaagc cacccttaac
    20461 cttgttcaaa gccactttta aatcttccac aaaatcacct gtatggctac gtttaattaa
    20521 atgcgctaac acttctgtat ccgaactcgt ttgaaaaata gcgccttctt cttctagttc
    20581 acggcgtaaa cttttcgcat taaccaaatt tccattatgc gcaagtgcta aagaagaact
    20641 atgaaagtga aataaaaatg gttgtacgtt ccctaagttt ttttgaccgg ctgtcgcata
    20701 tcgaacgtgg ccaatggctg ctttaccttt taaatcgtct agttcaccat gtttaaatac
    20761 gtctgctaaa aggccgagat ttcggtgacc ttttagtgtt tcaccgtctg tcgaaacaat
    20821 tccggcacct tcttgaccgc gatgttgtaa actatgcaac ccataatagg tgatttccgc
    20881 tgcattagga tgatcccaaa taccaaaaat accacattct tcgttaagtc cttttacttc
    20941 agcaagcatg gaatagcccc ttcccaaatg gatcgtaatt ccgttgtttt cgctgtaact
    21001 tgatcttcct tatgtttcac acgaatcgta tcatcctcgg ttactacacc aaggcggtat
    21061 actttttcca gttccattaa ttgcgcaaaa gctgcttcgt tttccggttt taccgatact
    21121 aagaaacgtg attgcgattc actgaatagt tgattcaact caaacggtac ttctacatcc
    21181 gcaccaagcc ctgctttaaa agtcgcttcc gcaagggcaa caccaaatcc accttctgcc
    21241 aaatcgtgac tagaagcaac tagaccttcc tgaatcgccg ttagaagtaa ttgttggtat
    21301 tttttctctg tcgttaaatc taattccggc gcacgtccgc taattttccc ttgttgcaat
    21361 ttttgcaatt ccgaaccact atattcagct tttgtttcac caattaagaa aatcacatcg
    21421 ccactatttt taaaatcttg tgtcgtaata tgtgccaaat cttctactaa accaaccatt
    21481 ccaatgactg gcgttggata aattccggta ccatctgttt cattataaag cgatacatta
    21541 ccagagataa caggcgtatc aagttctaaa caagccgcac taataccatc agccgctttt
    21601 tcaatttccc aaaaaatttc tggtttttca ggatttccaa agttcagtcc atctgtaatc
    21661 gctagtggtt tcccgccaga acaaacgata ttgcgcgccg cttccgcaac cgctatcgct
    21721 ccgcctactt ctggatcaag atacaaatag cgtgagttac aatcagttgt catggcaatt
    21781 gccttctcgg tcccacgcac acgaacaatc gccgcatctg aaccaggtac aacagctgta
    21841 tccgtccgaa cttgataatc atattgctca taaatatggc gcttactagc aatcgttggc
    21901 tgagcaagca gttccttcca aacaccgacc acatcttcca taactggcac aaacgattcc
    21961 tcttcttgga aagcttgata acgagctggc tctttggaag gtttatgata aactggcgca
    22021 tcttctgcaa gcgcatctac aggaacgttc gcaactactt caccatgatg aataattttg
    22081 tacattttat catctgttac ttgaccaatc acaacagcct ctaaaccata acgttcaaat
    22141 aacgcttgga tttcttccac atgccctttt ttcacacata gaagcatccg ttcttgcgat
    22201 tcagaaagca acatttcata aggcgtcata tttagttctc gttgcggcac atcatccata
    22261 attaattcta gcccagcgcc cgcttttgag gccatttcag aacttgaact aacgagacca
    22321 gctgctccca tatcttgaat tcccactaaa atatccgaat gatcacgaat cacatctaaa
    22381 caagcttcaa gcaacaattt ctccataaaa ggatcgccaa cctgtacagc agagcgttgt
    22441 tgttcacctt cttcactaaa ctctacagaa gcaaaagtag caccatgaat cccgtcacga
    22501 ccagttttag caccaacata catcaccggg ttgccaattc ctttagcttg ccctttttga
    22561 atatctttcg cttcaattaa gcctacacac attgcattaa ctagcggatt ttttgtataa
    22621 caaggatcaa attggatttc gccaccaacc gttggaatcc caatggagtt accgtatcct
    22681 gcgattcccg caacgacttc actaactaag tatttcgcat ggggtgtatc taactcacca
    22741 aaacgaagcg agttaagcat tgcaatcggt ctagctccca tcgagaacac atcacggata
    22801 atcccgccga ccccagtcgc agccccttga tacggctcca cgtaggatgg atgattatga
    22861 ctctccactt taaaagcaac acctaaacca tcgccaatat cgacaatccc agcgccttca
    22921 ccaggtcctt gtaatacttg tttgccttct gtaggaaatt tccgaagtac tggtttagaa
    22981 tttttatagc tacaatgttc cgaccacata acagagaaaa gcccagtttc tgtataatta
    23041 ggctcgcgtc caagaatcga acaaacaagc tcatattcac tatcagttaa gcccatttct
    23101 tgataaatct tttgttcttt aatttctttt gtcgttggct ccatgttagg catttacttg
    23161 ttcctccttc caagctttta caacggactc gaaaagtctt aaaccatctg taccgccaat
    23221 aatttcttct accgcgcgtt ctgggtgtgg catcattcca agcacattac cgcgctcatt
    23281 tacgatcccc gcaatatccg cacggctacc attcggattc acgctatcat atgtaaacac
    23341 aatttggtta ttatctttta attttaaaag tgtttcatcg tcacagtaat aattaccttc
    23401 cccgtgagca actggaactt ggataatttc gccttcttta taaagcccgg taaccatcgt
    23461 acttgcattc gccacacgaa gcggcaccgt cttacaaata aaatgcaaat tattgtttct
    23521 aattaaagca cctggcagta aaccaatttc agttaaaatt tggaatccgt tacacacacc
    23581 aagcactggt tttcccattt cagcaaagcg caaaacttct ggcataatac ttgaaaattt
    23641 tgcaatcgca ccagttcgca agtaatctcc gtaagaaaat ccacctggaa gtaaaaccgc
    23701 atcaaaacct gcaagacttg tttccgcatg ccatacatat tccgcctcct cgccaagaga
    23761 atcgcgaatc gcatgtagca tatcaagatc acaattagaa cctgggaact gaatgacagc
    23821 aaatttcatc gtttaagcct cctctatttc atatcggtaa tcttccatca ccggatttgt
    23881 tagcagtttg tcgcacattt cattcaatac ttcatgaata tctcgatctg attttgcaac
    23941 tttaagttcc ataaatttac caatacgaac atcttctact tcctcgtaac ccatgctttt
    24001 cgctgcatct tttactgcaa caccttgtgg atctaatacg cttttcttta aagtgacata
    24061 aactttgaca ttatacattt tgtggcctcc tagttttgaa cttgctttaa tctattcaat
    24121 acttctgtat acacatctgt taaattgcca atattccgac gaaagacatc cttatcgagc
    24181 ttttgatttg tttccttgtc ccaaagtcta catgtatcag gcgaaatctc atctgctagt
    24241 aaaatattcc cagtcgcatc ccgaccaaat tctaatttaa aatcaattag cgtaatattc
    24301 atttgattga ataattcttg taacacctta ttaatcgaac gagcagcctg gcgaattata
    24361 tccatctcac tcgttgtcgc aagctctaaa taaagcacat ggtcatcatt aataaacggg
    24421 tcatctaacg catcatcttt atagtaaaat tctactatcg catttggaat tagctcgcct
    24481 tcttcttttc caagccgttt cgcaagactc ccagccatta cattgcgaac aaccacttca
    24541 agtggaataa ttgatacttc tttcaccaat tgctccgttt ccgaaatcgc ccgaataaag
    24601 tgactctcta ttcccgctct tgctaaatga gaaaaaataa gcgatgtaat ttggttatta
    24661 agctcaccct tcccagcaaa agattccttt cgcaccccgt ttagcgctgt cgcatcatcc
    24721 ttataggcaa cacgcaagac acctgcttct tctgttttaa aaagtcgttt tgcctttcct
    24781 tcataaacca gttcattagt cacgataatt tatctcctta taaattactt aacctctttg
    24841 aaaaaataaa tatcaaagag gttaggttgt attctgcccg taattataat cctaaacgat
    24901 caaaaattaa gtcgacattc ttcaggtgat agttgtaatc aaagcaatct gcaatttctt
    24961 ccgcagatag gttttcaata atggttgcat cttgttctac taattcacgg aaaggtactt
    25021 gtttttccca agcttccatt gctcttggtt gtacgacatc atacgccgcc tcacgagcta
    25081 aacctttatc aataagtgcc agtaatacac gctgtgaata aataagtccc agtgttctgt
    25141 ccatattgcg tttcatattt tctgggaaca ccgtcaagtt tttcacgata tttccaaaac
    25201 gattcaaaat ataatcaagt aaaatagtgg aatctggcag aataattcgt tccgctgagc
    25261 tatgagaaat atcacgttca tgccaaagtg gcacattttc ataagcagta accatatgac
    25321 cgcgaataac gcgcgctaat ccagttacat tttcagaacc aattggatta cgtttatgcg
    25381 gcattgcaga tgaacctttt tgtccttttg caaagaattc ttccacttca cgcacttcac
    25441 ttttttgcag tgcacgtact tctaccgcaa atttttctac agaagttgca attaatgcaa
    25501 gtgttgccaa atattctgca tggcgatcgc gttgcaacgt ttgtgtagaa atcggcgcag
    25561 gagttgttcc taatttttca catacgtaag cctccacaaa aggatcaata ttcgcatacg
    25621 tcccgaccgc accagagatt ttcccgaatt ccacaccatc agctgcaaaa ttaaaacgtt
    25681 ctaggttacg tttcatttcc tcgtaccata gagcaagctt caagccaaaa gtagtaggtt
    25741 ccgcgtgaac accatgtgta cgtcccattg ttacggtata tttatgttct tttgcttttt
    25801 cgccaataat cgcaatgaaa ttttccaaat ccttacgcaa aatctcattc gcttgtttaa
    25861 gtaaataaga attcgctgta tccactacgt ctgttgaagt taagccataa tgaacccatt
    25921 tacgttccgc accaagcgac tcagaaactg aacgagtaaa tgccacaaca tcatgtctcg
    25981 tttctagttc aatctcatga atccgatcca catcaaactt tgcattagca cggatcttcg
    26041 caacatcttc tttcggaata tcaccaagct ctgcccatgc ttcacaagcc aaaatctcca
    26101 cttctagcca agcctgataa cgattttgtt ctgtccaaat gttgcccatt tctttacgag
    26161 tataacgttc taacatcctt ttaaattcct ccagttactt ccaaatttgc gtttcttcta
    26221 aatcttgtat aaccgctttt ggttcatcag caagcacagt aacatgaccc attttgcgat
    26281 tgattttcgc ttcttttttt ccataataat gtacaaacca atgtggataa ttcaccattt
    26341 gtttattcac tgcatcgaca tgttgcccta aaatattaat cattaaggct ggttttaaga
    26401 gttctggttt tacaagtggc aatccaacaa tcgctcgaat atgctgcgta aactgagaaa
    26461 tagaacaagc ttcaattgta aaatgcccag aattatgagg tcttggagca agttcattta
    26521 cataaatagc ccctgatttt gtcacaaaca tttctactgc taaaacacca cataattgaa
    26581 gtacatctgc taactttctc gcaatttctt ccgcttcctc atgcacgtca tccgccacat
    26641 ctgcaggagc cgtagttgta tgcaaaatat tatttacatg tacattttct gcaactggaa
    26701 aagtttctat ttgcccatct aaattacgtg cgacaaccac agaaatctct ttttcaaaag
    26761 gaatccaagc ttctagtaca caagagccgt atcgcaacaa tctcgctgct gtttcaatat
    26821 cccttgcatc atgaataacc acttgccctt tcccgtcgta tccaccttgt gccgttttta
    26881 aaacagcagg atatccaata cttttaattt cattttcaat ttcatcttgt tccactataa
    26941 ccgcatacgg cgcaatgtta atattagctg attccagata agctttttcc aaaatcctat
    27001 cctgtgtaat cgaaagcaat tccgatcctt gcgggacaga tactaagttt tgcgtcattt
    27061 tcaaagcatc atagtcgata ttttcaaatt catatgtaac tacatctgct ttttcggaaa
    27121 gttcgcgtaa tgctacttta tcatcatagt cagcaataat ttgttcatca cttacttgag
    27181 cagctgggca atcagcggta ggatcaagaa caataatacg ataccccatc gctttcgccg
    27241 caagagcaag catacgtcca agttgtccgc caccaataat accaatagta ctatttgtca
    27301 gtaaaaattt tttatccaag ataatcacta ctttctagaa ctgtttcttc tagtgtagca
    27361 cgtctttttt gtaatctgtt agtaattgca tcgtccgtta tggataaaat ttgcgccgct
    27421 agaaggccag catttacagc accactttct ccaatagcaa ctgtcgctac cgggacacct
    27481 ccaggcatct gtacaataga aagtaacgaa tccattccat tcaacgcttt tgatttaatt
    27541 ggcacaccaa taacaggcaa agtcgtcttt gccgcaatca tacctggcaa atgcgccgcg
    27601 cccccagcac cggcaataat aattttcaaa ccacgttccc gcgcttgttc tgcatattga
    27661 aacattaaat ctggtgtacg atgagcagaa accacttttt tctcataagc tatttctaat
    27721 tcatctaata catcacatgc ttttttcatt gtatcccaat ctgaggtact ccccataatg
    27781 acaccaatta cagcaggcat tacgtgatca actccttaat aatctctttt cgactccttc
    27841 attctaacaa taggcacgat aaatgtcaac gaaaaatcga acatttaatt gttacatttt
    27901 attaacgttc gtgtttaggt cgtatttgct ctttttacta gcattatgta tctaatttca
    27961 ctaaataaat aaaaaaagaa gctaccatca aaggtaagct cctcttcatt tccgaacttg
    28021 tttaacccaa aaaccaccgt gaatttgttt tggctcagag gaaacaataa atgccccatt
    28081 atcaatttca ataatgtgtt tatataattt ccgctcattc tttctttgag tcaaaatttc
    28141 aagcatcatc cgttcaccat cacgtccact cgcaagccaa ctagtaaccc cataacctag
    28201 atctcgaatt tgatttggta agtctaagtt atattctttg gtaataacat tcactgtaat
    28261 atagcctaaa gcaattcgct cttcaatttt cataccaaca ataattccta caccaaatcc
    28321 aatagcatat gctaaaacat tggcaatatt atttaagtta tccaaaacca aactaagagc
    28381 aactacatag ataatcattt caaacacact tgaaagtgca gctaagtaac gataaccttt
    28441 catcgttaaa agtaacctca ccgtataaat cgtcacatac aaaatattta caataaaaat
    28501 agtagccact ataaatatac cgttatccac taaaataacc cctccaccta aaaactacat
    28561 tccactgagt cttttactaa tataacatcc attaagatag ctgacaaaag aaacactt
//
LOCUS       DABQVC010000009        28563 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.009,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000009 DABQVC010000000
VERSION     DABQVC010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 28563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28563
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.009"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            10..1653
                     /locus_tag="IBJ56_000281"
     CDS             10..1653
                     /locus_tag="IBJ56_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HAM3416566.1"
                     /translation="MTVKPGFDYMNNPLLNKGTAFSKEERASYQLDGLLPPIIETIEQ
                     QAVRIETQIENLETPLHKHQLLTNLYNENRTLYYYVVTKNVTDYLPIIYTPTIGDAVI
                     QYHKEYTAPDEALFIDAFAPEKLSASIKNYAKNNPNIDMIVITDGEGVLGIGDWGVNG
                     VKIAVGKLAVYTVAAGLAPDRVLPVVIDAGTNNETLLNDPLYLGNKRPRLSESEYDAF
                     IASFVNVMKEVFPKAILHWEDFGRANASRILHNYRDKICTFNDDIQGTGAMVVAAVLA
                     TIQVSKIPLSEQKIIIFGAGTAGIGIADQLSAQWMRETGLPFESAKKHFYLVDRNGLV
                     LDNMTDLTTGQKKYAHPSTEWSNVPTDTLENLMEAVHPTMLIGCSGVTGAFKESIVKK
                     MTQYTERPAILPLSNPTKLAEATASDLIQWTDGKALIVTGSPSKPVEYQHTTYEIGQA
                     NNALLYPGLGLGALVTRAKYITDGMLAAASMAVAEQISPNKAGAALLPHVRTLRETSR
                     AVAIAVANQAIKENIHQVELTNVTEAIEREMWQPIYKGV"
     gene            1656..2663
                     /locus_tag="IBJ56_000282"
     CDS             1656..2663
                     /locus_tag="IBJ56_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HAM3416567.1"
                     /translation="MFYKTKQSLDQLVQNGSTPGISYQIKTNYLEENNIMGLKSVFPE
                     AEILPRTTENIYDIASLTKVIATTTRILQLIEQQRFQLNDPIQMYLPDFRYNNVTILH
                     LLTHSSGLAQNIPNFSMNNREDVIRYVYATPQINIPGTVVTYADANFLLLGYLISKMD
                     GNYEKAIQNNILEPLSMTNTSFHPANKKQVIPTELDQTRGLIQGDVHDFKAWTAKSGT
                     GHAGLFSTLSDLSKFRDALMLQHGAPILSEKTWQLMQINHTPGLNRSRGLGWDLRGDS
                     VLYHTGFTGTFMVLDLKHQASLIVLSNRVHPSRANPNFVDKRDSIVDTFLEEVANTTE
                     V"
     gene            2896..5175
                     /gene="pflB"
                     /locus_tag="IBJ56_000283"
     CDS             2896..5175
                     /gene="pflB"
                     /locus_tag="IBJ56_000283"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HAM3416568.1"
                     /translation="MTKAWDGFKGTAWQENISVGQFVQDNYTPYDGDESFLEKSTPRT
                     TKLNEKINKLVEEMDAKGGVLDMDNAIVSNVASHKAGYVDQENEVIVGLQTDKPFKLA
                     FMPNGGLRTAEQCLTDNGYSIDQELHDFYVKNRSTANDGIFRAYTDDIKRARHSHIVS
                     GLPDAYSRGRIIGLYQKPALYGVDRLIAEKQQDLKKIAISSDENIRLREEIWLQIKAL
                     KDLIVLGNEYGLELGRPAENATEAVQWTYMGYLASIKQANGAASSFGRIPIFLDIYIQ
                     RDLEKGIITEFDAQELIEQLTLKLRMVRFARTDGYNELYASNPTFVTTSMAGMGADGR
                     HRVTKTDYRFLHCLDNLGNSAEPNLTVLWDARLPESFKEYCMKMSVKHSSIQYENDKL
                     MQEEGYGDMQCISCCVSPLNPEADKDKGETHNLQYFGARVNVLKCLLGAINGGKDDLH
                     KNQVFDVVEPITTEYLEYEEVLEKFDKSMDWLTDTYVDAMNIIHFMTDKYNYESMQMA
                     FLPSKVTANMGFGICGFANVVDSLSAIKHAKVKTIRDEDGFVYDYEVEGDFPRYGEND
                     DRADDIAVMVLKMFKDKLDSHKLYKDSEATVSVLTITSNVAYSKQCGNSPVHKGPVFD
                     ENGKIVKEPEFFSPGANPSNKAKGGFLDNLASLSKLPFHYANDGISLTIQGAPKMFGK
                     TTEEQHHNLVGILDGYFTKGGQHINLNVLNHDEVIEKIKAGIPVILRISGYCLNTKDL
                     NEEQKMELCQRMFHEKLIG"
     gene            complement(5223..6488)
                     /locus_tag="IBJ56_000284"
     CDS             complement(5223..6488)
                     /locus_tag="IBJ56_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAM3416569.1"
                     /translation="MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMS
                     GGGRCNVTNRRPAEEIIKHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRM
                     FPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVI
                     VAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDV
                     SLSVLNAKGKPIITHQMDMIFTHFGVSGPAALRCSMFVLRELKKTGASTVKMRLDLFP
                     NVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKADLDETADYKQVSPKK
                     IEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDI
                     NGYTGGYNITCALVTGHTAGAYAAEVSNA"
     gene            complement(6598..7281)
                     /locus_tag="IBJ56_000285"
     CDS             complement(6598..7281)
                     /locus_tag="IBJ56_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metallopeptidase"
                     /protein_id="HAM3416570.1"
                     /translation="MSFSQYIIYFIIVAAIPLWAQYRVKTTYAHYSKVGVANGLTGAE
                     VARHILDTNGLTNVPVHETKGILSDHYDPRKKAVFLSEANFRGRSIAGAAVAAHEVGH
                     AIQDQQDYAFMRFRSALVPVTMFSSNISWVFLIIGMLANVASFMLLGIILMAVGVLFQ
                     LITLPVEFDASKRALVQLESGGLVASSELPQAKKVLSAAAMTYVAAMAVAVLELLRLL
                     LIFTNMNRN"
     gene            complement(7368..7964)
                     /locus_tag="IBJ56_000286"
     CDS             complement(7368..7964)
                     /locus_tag="IBJ56_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1405 domain-containing protein"
                     /protein_id="HAM3416571.1"
                     /translation="MLYSLLANRAFLRLLFFGNLLGAIYGYIWYLPQLQMTEPRFWLF
                     VPDSPTAILFFTLALVAFLGKKHWPLMEALGFVCLVKYGLWAVGMNIFYMIDQGMLVW
                     GSVALILTHGFMAVEGILYAPFYRFRIGHFMIAAVWVFHNDVIDYVFGQMPIYMGLEK
                     YLPEIGYATFWLTVFVLWFVYDKTIKNKHLTLEFPHDE"
     gene            complement(8052..8597)
                     /locus_tag="IBJ56_000287"
     CDS             complement(8052..8597)
                     /locus_tag="IBJ56_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpiB family protein"
                     /protein_id="HAM3416572.1"
                     /translation="MKASISIDEKKDFIRWFLNKHQMKTREAMWVLNYIAGHDQIVKY
                     VHFVDNLEGCARGLSLSAHGVESEPFLFFKGNIMTTDPEKAFHDIRLNWDEELYVELH
                     FEEAMSSPEYALVREDNPFTAVKLADEEKEMADALIYQSVHQFSREKVLQQIDEALDT
                     RDEAAFHKLVRILQQMDTEKE"
     gene            complement(8633..9886)
                     /locus_tag="IBJ56_000288"
     CDS             complement(8633..9886)
                     /locus_tag="IBJ56_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAM3416573.1"
                     /translation="MELANKMLHALEHEDMALAKKYFDEVVQAGTDEEQYYLAEELFT
                     LGFLDETEDLYELLLAKYKDEGELLVRAAEVALEKDDIDSAQDYLEKVNKEDEAYIES
                     LLVLADLYQMQGLFEVSEQKLLEAKQMAPNEPIIDFALGEYYLSQARFASAVQSYQTA
                     VEAGLTIISNGAVSVYERIAEAFAASGAFEEALSYYERALEDKESVDTLFGMGLTAYQ
                     AKDYTKAIHALEHLREHDPSYTTLYSYLAKSYEENGEPEKAIAVLRDGLTQDEFNKEM
                     FLEAGKLAVTLRLPEEAEEFYRQAIVLDEEYSEAIMQLNKLLLAKEDYEGVIELVEGL
                     GEEVISEPQIFWDVSVAYQETEQYNKAKANYELAYSHFTNNPTFLKEYGLFLREEGEY
                     AKSQEVLRNYLELEPEDTEILSLFD"
     gene            complement(10018..11304)
                     /gene="aroA"
                     /locus_tag="IBJ56_000289"
     CDS             complement(10018..11304)
                     /gene="aroA"
                     /locus_tag="IBJ56_000289"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HAM3416574.1"
                     /translation="MKLITNKQGLVGAITVPGDKSMSHRSIMFGAIAEGKTVIRHFLR
                     ADDCLGTIKAFKALGVKIEETEEEIIVHGTGFDGLKQADGPLDIGNSGTTIRLMMGIL
                     AGRDFDTVILGDESIAKRPMNRVMLPLQQMGAKMHGKDGSEFAPITINGKQSLKRMEY
                     HMPVASAQVKSAIIFAALQAEGETIIHEKEKTRDHTEHMIRQFGGEIEMDGLTIRVKG
                     GQTFTGQEMTVPGDVSSAAFFIVAGLITPGSEIELTHVGLNPTRTGIFDVVEQMGGSL
                     VVKDSSRSTGKLAGTVVVKTSDLKGTEIGGDIIPRLIDEIPVIALLATQAEGTTIIKD
                     AAELKVKETNRIDAVATELNKMGADITPTEDGLIIRGKTPLHAANVTSYGDHRIGMML
                     QIAALLVEEGDVELERPEAVSVSYPTFFEDIRSLLK"
     gene            complement(11318..12421)
                     /locus_tag="IBJ56_000290"
     CDS             complement(11318..12421)
                     /locus_tag="IBJ56_000290"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HAM3416575.1"
                     /translation="MKGTVVIVGLGLIGGSIALAIKAKHPEAHIIGIDVSYHSLEVGK
                     SLGVIDEIGESILIDGPKADLLVFCCPVKETEQLLTRLPGLRLKENVVVTDTGSTKGT
                     IMEASTALRESGITFIGGHPMAGSHKSGVRAAKELLFENAYYLLTPTKDVAEDKVAEL
                     RTWLSGTNAKFLVLSPNEHDEITGMLSHLPHIVAAALVNQTQSFTEEHPAAFRLAAGG
                     FRDITRVASSDPRMWTDISISNQKTLTKQLTIWRDSMNEALEMLESEDASSIYAFFDG
                     AKEFRDSLPVHQGGAIPSFYDLFVDVPDYPGVISEVTRYLGEEEISLTNIKILETRED
                     IFGVLQITFQSDEDRDRAKRCIETRSNYTCHYE"
     gene            complement(12442..13524)
                     /gene="hisC"
                     /locus_tag="IBJ56_000291"
     CDS             complement(12442..13524)
                     /gene="hisC"
                     /locus_tag="IBJ56_000291"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HAM3416576.1"
                     /translation="MKWKKSLTGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTS
                     PKVAELQANSSVETEIYPDGWASSLRTVVADFYQLEEEELIFTAGVDELIELLTRVLL
                     DTTKNTVMATPTFVQYRQNALIEGAEVREIPLLVDGAHDLDGMLNAIDDNTTIVWVCN
                     PNNPTGNYIDLADIQAFLDKVPSDVLVVLDEAYIEYVTPQPEKHEKLIRTYKNLIITR
                     TFSKIYGLASARVGYGIADKAIIEQLNIVRPPFNTTSIGQKLAIEAIKDQAFIEACRT
                     SNANGIKQYEAFAKRFEQVKLYPANGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALG
                     FPTAVRITIGKEEENSAVIALLEKLL"
     gene            complement(13524..13898)
                     /gene="aroH"
                     /locus_tag="IBJ56_000292"
     CDS             complement(13524..13898)
                     /gene="aroH"
                     /locus_tag="IBJ56_000292"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HAM3416577.1"
                     /translation="MRAIRGATTIETNSPEAIYAATKELFEEILTQNEITDSEQLTSV
                     IITVTEDIFAAFPAKAVRETPGFEYVPVMGMQEIPVPNSLPMCIRFMVFTDLHKPLEA
                     INHVYLRGAKVLRPDLVKEEDA"
     gene            complement(13895..14992)
                     /locus_tag="IBJ56_000293"
     CDS             complement(13895..14992)
                     /locus_tag="IBJ56_000293"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HAM3416578.1"
                     /translation="MPEITVRAKSKTYPVYINEFALEDVREKWTESLAKFSHVFVLTD
                     EHVAELHQAKLDAVLADLPVVTYYVAPNGEEAKTFRVYEDVMTKLIETGLDRKAVLIA
                     FGGGVIGDLGGFVAATYMRGIPFYQVPTTVLAHDSAVGGKVAINHPLGKNMIGNFYQP
                     EAVIYDTQFFATLPEREMRSGFAEMIKHALISDQTLLRALMDTFTEPKDFYTKDLTPF
                     LQRGIEIKANIVAQDETEQGVRAYLNFGHTFGHALEAYGNFGKWLHGEAITYGMIYAL
                     TMSETIYGLDFDLAEFKTWLKQLGYDTTFDATVPFNKILENMRHDKKTTFNEISMVLL
                     EEIGKPVIFKAEDDLIFETYKRVMRNGGNGI"
     gene            complement(14995..16161)
                     /gene="aroC"
                     /locus_tag="IBJ56_000294"
     CDS             complement(14995..16161)
                     /gene="aroC"
                     /locus_tag="IBJ56_000294"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HAM3416579.1"
                     /translation="MRYLTAGESHGPGLTTIIEGLPAGMPLLAEDVNKELKRRQGGHG
                     RGARMRIEKDQVQITAGIRHGKTLGAPVAMFVENKDWKHWETVMSIEPVPEKNEKSRR
                     VSRPRPGHADLVGGMKYGHNDMRNVLERSSARETTVRVAAGAVAKKLLHELGIEVAGH
                     VLEIGGTRANLTRDYAVSEIQETSEASPVRCLDGVAAEEMMQKIDDAKKNGDTIGGIV
                     EVVVGGVPAGLGSYVQWDKKLDAKIARAIVSINAFKGAEFGVGFEAARKPGSEVMDEI
                     LWSKEDGYTRRTNNLGGFEGGMTNGMPIVVRGVMKPIPTLYKPLQSVDIDSKETFNAS
                     VERSDSCAVPAASVVAEAVVAWEVAVAVLEKFDGDRFDTLKKHVEEHRNLTKEF"
     gene            complement(16365..16808)
                     /gene="ndk"
                     /locus_tag="IBJ56_000295"
     CDS             complement(16365..16808)
                     /gene="ndk"
                     /locus_tag="IBJ56_000295"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HAM3416580.1"
                     /translation="MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDREL
                     AEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIR
                     ADYAVHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI"
     gene            complement(16827..17792)
                     /gene="hepT"
                     /locus_tag="IBJ56_000296"
     CDS             complement(16827..17792)
                     /gene="hepT"
                     /locus_tag="IBJ56_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenyl diphosphate synthase component II"
                     /protein_id="HAM3416581.1"
                     /translation="MKLNFLYANMQKDIDSVEKELKKALSGAAAETTSDAALHLLEAG
                     GKRIRPMFVCLSARLAPNADFDAVKNASVAIELIHMASIVHDDVVDNADLRRGRETIK
                     SKWGNHIAMYTGDFLFAKSLEYMTEIKDVAAHKMLSHVTVELSTGEIEQLKDKYNFDQ
                     SVRNYLRRIKRKTALLIAASCGLGGVVSGQSEADYQKLYRFGYYVGMAFQITDDVLDF
                     VGTEKELGKPAGEDLRQGNVTLPVFFAMEDPFLKKRISQVTEETPAEEIAVLVEEVKK
                     AGAKQAEDVATVYLKKAVEILDSLPQVPELKPLKQIVRVLDKRNY"
     gene            complement(17803..18516)
                     /gene="menG"
                     /locus_tag="IBJ56_000297"
     CDS             complement(17803..18516)
                     /gene="menG"
                     /locus_tag="IBJ56_000297"
                     /EC_number="2.1.1.163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="demethylmenaquinone methyltransferase"
                     /protein_id="HAM3416582.1"
                     /translation="MTETKEEKVHKVFEKISPSYDRMNSVISFKLHVKWRKETMKLMR
                     VQKGTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVEL
                     IHGNAMELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIP
                     GWKQVFNAYFRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVRY
                     ISHSGGASATHFGFKKKEQ"
     gene            complement(18539..19306)
                     /locus_tag="IBJ56_000298"
     CDS             complement(18539..19306)
                     /locus_tag="IBJ56_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenyl diphosphate synthase component 1"
                     /protein_id="HAM3416583.1"
                     /translation="MTYQAREAGLKEVEQLVHEQAVYQYLQENNEGGQMDKDQMLFLH
                     EAISGSDLTDASAYRVVSATLYMILAHDTHEKIDEPGDVVQLTRKEQELTVLAGDFYS
                     ALYYRTLAELEMIPLLRALQSGVQETNTAKTNIYQLHVATDEEYLSQLTLTNAAIFAK
                     FAKYFMKDDTFIALGCQFFLLKRLQTELATYKEIGASRLKRAFDHGYFAKEAVSNFES
                     WLVAIIRDVKSEVKRLKDKSEPLSNILGKRIIEVIND"
     gene            complement(19363..19932)
                     /gene="folE"
                     /locus_tag="IBJ56_000299"
     CDS             complement(19363..19932)
                     /gene="folE"
                     /locus_tag="IBJ56_000299"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HAM3416584.1"
                     /translation="MEQIDKQKIADAVKVILEAVGENPEREGLIDTPMRVARMYEEVF
                     AGLKKDPSVHFDTIFEEQHEELVLVKDIRFSSMCEHHLVPFFGVAHVAYLPQNGRVAG
                     LSKLARVVDDVSRRPQLQERITTTVAEIMMEKLKPLGVMVIMEAEHMCMTIRGVNKPG
                     TKTITSAVRGAFKNDDKLRSEVLALIKHN"
     gene            complement(20168..20443)
                     /locus_tag="IBJ56_000300"
     CDS             complement(20168..20443)
                     /locus_tag="IBJ56_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HAM3416585.1"
                     /translation="MANKTDLVNSVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQ
                     LIGFGNFEVRERAARKGRNPRTKEEIDIPASKVPAFKPGKALKEAVK"
     gene            complement(20854..21834)
                     /locus_tag="IBJ56_000301"
     CDS             complement(20854..21834)
                     /locus_tag="IBJ56_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HAM3416586.1"
                     /translation="MEVTRTDKAVTLTWNKEEVSEGTVVFVSSSPKLEDNSDPVFKVT
                     NDVDHYSYDTKDIPIYFFLETPNGDRTTVSERILPLESVFNFRDMGGYASKNGKHVKW
                     GKLYRSSNLVNINENDAALLQKLHIKWICDLRSSSEVQAQPTPAIEGVLNKHIPIGTA
                     KNEETKLPVTNDTTIYEPLMGESYRVFVQSVEGFREIFTEVLEDAKAGLPFVFHCTAG
                     KDRTGVLGALLLTLLDVPEKTIFGDYAITNRYQDDILQEMGGIVALFSNGTEKIDLET
                     FRPMAEARPEYLEIAFDEMKKQYGSVANYLEKGIGITAAEKAAFQKEMLE"
     gene            complement(21937..22953)
                     /locus_tag="IBJ56_000302"
     CDS             complement(21937..22953)
                     /locus_tag="IBJ56_000302"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HAM3416587.1"
                     /translation="MTQKKVAILGAGSWGTGLALVLADNNHQPVIWGNLDKIVNEINE
                     SHTNSHYLPDIILPTEVKATLSLDEAIDGAEIVVIAIPTNAMRIVCKQLNEALKEPTI
                     LVHVSKGIEPETNLRMSEVIEDEIDASKRKALVVLSGPSHAEEVALRHPTTLCASCKD
                     LSAAEIVQDRFINNNLRIYTNDDVIGAEIGGALKNIIALGAGISDGLGYGDNAKAALM
                     TRGMAEITRLGVAVGSNPQTFYGLTGIGDLIVTCTSVHSRNWRAGNMLGKGENLDEVL
                     EKMGMVVEGVRTAKAVHGWAKKLDIDMPITESIYAILFENKDAREAVDLLMGREKKIE
                     KESF"
     gene            complement(22976..24286)
                     /locus_tag="IBJ56_000303"
     CDS             complement(22976..24286)
                     /locus_tag="IBJ56_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HAM3416588.1"
                     /translation="MAKPVVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYN
                     SAEWLGKEFNIIDTGGIDLSDEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQ
                     VAKILYRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVR
                     AHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY
                     TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDK
                     RIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAKTKQ
                     RLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKP
                     PTFVVFVNDPELMHFSYERFLENRIREAFPFEGTPIRVIARKRK"
     gene            complement(24430..25575)
                     /gene="rpsA"
                     /locus_tag="IBJ56_000304"
     CDS             complement(24430..25575)
                     /gene="rpsA"
                     /locus_tag="IBJ56_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HAM3416589.1"
                     /translation="MSEDLFDVEVRNFEEGDKVTGTVTSVEDKQVYVGIPGSKLDGVV
                     PISELSNIHVETASDVVSVGDTLDLIVTKVEDDILVLSKRKVDAEKASDDIKAKFESG
                     EVFEAVVSDVVKGGLVVDLGVRAFVPASLVEDHFVEDFADYKGTTLTFKVVEFEPENN
                     RVILSHRAVVETEKASQKQALLSEIKEGDVIEGTVQRLANFGAFVDIGGVDGLVHISQ
                     ISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIKATLPGPWDGIAEKAPVGSVL
                     EGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVNEAD
                     KRLSLSIKELKDAPVEEADYELPEENTGFQMSDLIGDKLKGLQNDDK"
     gene            complement(25934..26608)
                     /locus_tag="IBJ56_000305"
     CDS             complement(25934..26608)
                     /locus_tag="IBJ56_000305"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HAM3416590.1"
                     /translation="MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTY
                     IALKNNIAYEDEKAIATLLQKTVIRFEPGEVQQVFVGEENVTEVIRSLEVTNHVSIVA
                     AHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKEN
                     MAKGFAGDLGQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDEVANKILSLA
                     ELKINN"
     gene            complement(26624..27586)
                     /locus_tag="IBJ56_000306"
     CDS             complement(26624..27586)
                     /locus_tag="IBJ56_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HAM3416591.1"
                     /translation="MAKVALITTGGTIASKKTASGKLASGELSGEELAALCQLPTEIQ
                     IDIYSTFQLPSMHITLPDLISLKQLIESIFMDETYDGIVVTHGTDSLEETAYFLDLAV
                     TDARPIVVTGSQRAPEEPGTDAYVNIRHAIYTACEINLRQAGTVVVFNERIFAARYVK
                     KVHASNIQGFSAFGFGYLGIIDNDQVFLYQKPLEHECFDIRLDLPEVVVIKCYIGADG
                     LFIDAAIDSGVSGIVLEGVGRGQVAPKMMPAIIRALDAGIPVVITTSAEEGNVYTTYD
                     YEGSTFDLYNRGVILGKDYDSKKARMKLMVLLASQEEINQTNFR"
     gene            complement(27667..28386)
                     /locus_tag="IBJ56_000307"
     CDS             complement(27667..28386)
                     /locus_tag="IBJ56_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HAM3416592.1"
                     /translation="MVKTRKEKREYEEPADYDMSSEGQDEFNNEPPMLSRSDSRRGKK
                     KTIFRYPLLNLLIVFFLLIPIVIVIVFVTVQNMGSSNEVKTETESTVNVSDNTQSKEE
                     KEKAKKAAEEKAAAEKAAEEKKAAEEKAAADKKKQEEDAVKAANAKKEQEAAEEKAAA
                     DKAAAEKAAAEKAEQQKANEASQQKAGGSHTVKAGDTLYSIARSTYGQAGAAAGVEKI
                     KQANGLGSDNVPVGTVLTIPQ"
BASE COUNT         8374 a         6459 c         4717 g         9013 t
ORIGIN      
        1 tgctgaaaaa tgactgtaaa accaggtttt gactatatga ataatccatt attaaataaa
       61 ggaaccgctt tttcaaaaga agaaagagca agctatcaat tggacggatt actgccacca
      121 attatcgaaa caattgaaca acaagccgtg cgcatcgaga cgcaaataga aaatttagaa
      181 acacctttac ataaacatca gcttttaaca aacttatata atgaaaatcg caccctctac
      241 tattatgtcg taacaaaaaa cgtgactgac tatttgccaa ttatttatac accaactatc
      301 ggcgacgcag ttatccagta ccataaagaa tacactgcgc cggatgaagc cttatttatt
      361 gatgcctttg cacccgaaaa attaagcgca tcaataaaaa actacgcaaa aaataatccg
      421 aatattgata tgattgttat aacagatggt gagggtgtgc ttggaattgg cgactggggt
      481 gtgaatggtg tgaaaatcgc tgttggaaaa ttagcggttt atacggttgc agctggactt
      541 gcaccagacc gtgttctgcc agttgttatt gacgccggaa cgaacaacga aacacttctt
      601 aacgatccac tatatctagg aaataaacgc ccccgccttt cagaaagtga atatgacgct
      661 tttattgctt cttttgttaa tgttatgaaa gaagttttcc cgaaagccat ccttcactgg
      721 gaagactttg gacgcgcgaa tgcaagtcgt attctgcata attaccgcga taaaatttgt
      781 acatttaacg atgatattca aggaactggg gccatggtgg ttgctgctgt tcttgcgacg
      841 atccaagttt ccaaaatacc attaagcgag caaaagatta ttattttcgg ggctggaact
      901 gctggaatcg gtatcgctga tcaacttagt gctcagtgga tgcgtgaaac tggtcttcct
      961 tttgaatcgg cgaaaaagca tttttattta gtcgaccgaa atggtttagt gcttgataat
     1021 atgaccgact taactaccgg gcaaaagaaa tatgcacatc cgtcgactga gtggtctaac
     1081 gtgcccacag atacgttaga aaacttaatg gaagcagttc atccaacaat gttaatcggc
     1141 tgttctggtg tcaccggtgc ctttaaagag agcatcgtca aaaaaatgac ccagtataca
     1201 gaacgaccag cgattttgcc actttctaat ccaacaaaat tagccgaagc aactgcttct
     1261 gatttaattc agtggacaga tggaaaagcg cttattgtta caggtagccc ttccaaacca
     1321 gtagaatatc aacatactac ttatgaaatc ggtcaagcga acaatgcact tctctatccg
     1381 gggctcggac taggtgctct tgtcactcgt gcgaaatata ttacagatgg tatgctcgct
     1441 gctgcttcca tggctgtcgc tgagcagatt tcaccaaaca aagcaggcgc agcccttcta
     1501 ccacatgtgc gcacccttcg cgaaacatcg cgtgcagtag ccatcgctgt cgctaaccaa
     1561 gctattaaag aaaacatcca tcaagtcgaa ttaacgaatg tcaccgaagc tatcgagcgg
     1621 gaaatgtggc aacctattta taaaggagtt tagatatgtt ttacaaaacg aagcaatcac
     1681 tagatcaact cgtccaaaac ggctccactc cgggaattag ttatcaaata aaaactaatt
     1741 atctggaaga aaataacatc atgggattaa aatccgtttt tccagaagca gaaatcttac
     1801 caagaacaac agaaaacatt tatgatatcg cttctttgac caaagtaatt gctacgacta
     1861 ctcgtatttt gcaacttatc gaacaacaaa gattccaatt aaacgaccct attcaaatgt
     1921 atttaccaga tttccggtac aataatgtta cgattttaca tttactaaca catagctccg
     1981 gccttgcaca aaatatccct aacttctcaa tgaacaaccg agaggacgtt attcgttatg
     2041 tgtatgccac gccacaaatt aatattcctg gaacagtagt cacatacgcc gatgctaatt
     2101 ttcttttact cggttatttg attagtaaaa tggacggcaa ttatgaaaaa gccatccaaa
     2161 acaatatttt agaacccctg agtatgacaa atacaagttt tcatcccgca aataaaaaac
     2221 aagtcatccc aaccgaactt gaccaaacgc gcggtttaat tcaaggtgat gtccatgatt
     2281 ttaaagcttg gactgccaaa tcaggcacag gccatgccgg actttttagc accctaagcg
     2341 atctttccaa attccgagat gcgctcatgc tacaacacgg tgctccaatt ctttctgaaa
     2401 aaacttggca actgatgcaa ataaatcata cccctggtct caatagaagt cgcgggctag
     2461 gctgggattt acgcggtgat tctgtcttat atcataccgg attcaccggt acttttatgg
     2521 tgctcgattt gaaacaccaa gccagtttaa tcgttctttc taaccgcgtt catccaagcc
     2581 gagccaaccc aaatttcgtt gacaaacgtg acagcattgt cgacactttt ttagaagaag
     2641 ttgcaaacac aacggaagtc tagcatatta gctaggcttc tttttctgcc ttttgcctcc
     2701 cgccctactt cgataaaaac tgtattaaca cagctgttga aagccttttc tagttatata
     2761 aaagaaattt attttctttc tggttttata ttgttttcgt tttcacaaag gagtatgctg
     2821 ttcaatgaag aaagattcta aagacttgtt tctggcttta agtgaaaagg aacacaattg
     2881 aaggaggaaa ttataatgac aaaagcatgg gatggtttta aaggaaccgc atggcaagaa
     2941 aacattagtg tagggcaatt cgttcaagac aactacactc cttacgatgg cgatgaaagc
     3001 tttttagaaa agagcacacc aagaacaacg aaactaaatg aaaaaataaa taaactagta
     3061 gaagaaatgg atgcaaaagg cggcgtactt gatatggata acgctatcgt atccaatgtt
     3121 gcatctcaca aagctggtta cgtggatcaa gaaaatgaag ttattgttgg tttacaaaca
     3181 gacaaaccat tcaaattagc atttatgccg aatggtggtc ttagaacagc cgaacaatgt
     3241 ttaacagaca acggctattc cattgatcaa gaattacatg acttctacgt aaaaaatcgt
     3301 tctacagcaa atgatggtat tttcagagca tatacagacg atatcaaacg tgcgcgtcac
     3361 tcccatatcg ttagtggtct tcctgatgca tactctcgcg gaagaatcat cggcttgtac
     3421 caaaaaccag cactttacgg tgtggatcgt ttaatagcag aaaaacaaca agacttgaaa
     3481 aaaattgcga tttcttctga tgaaaacatt cgtttacgtg aagaaatttg gttacaaatc
     3541 aaagcactta aagacttaat cgttttaggt aacgaatacg gtttagaact tggacgtcca
     3601 gctgaaaatg caacagaagc ggtacaatgg acttacatgg gctaccttgc ttctatcaaa
     3661 caagcaaacg gtgctgcaag ctcattcggt cgtattccga ttttccttga tatctatatc
     3721 caacgcgatt tagaaaaagg cattatcact gaattcgatg cacaagaatt aatcgaacaa
     3781 ttaaccctta aattaagaat ggttcgtttt gcaagaacag atggttacaa cgaactttac
     3841 gcttccaatc caacattcgt tacaacttca atggctggta tgggcgcaga cggtcgtcat
     3901 cgtgtgacta aaacagatta tcgtttctta cactgcttag ataacctagg aaactcagcg
     3961 gaaccaaact taactgtcct atgggatgct cgtttaccag aaagctttaa agaatattgt
     4021 atgaaaatga gtgtaaaaca ttcctccatt caatacgaaa atgataaatt aatgcaagaa
     4081 gaaggctacg gcgatatgca atgtatcagc tgttgcgtta gcccacttaa cccagaagca
     4141 gacaaagaca aaggcgaaac acataacctg caatatttcg gtgctcgtgt caacgtactg
     4201 aaatgtcttc ttggagctat caacggcggt aaagatgatc ttcacaaaaa ccaagtattc
     4261 gacgttgtag aaccaattac aaccgaatac cttgaatacg aagaagtact agaaaaattc
     4321 gataaatcaa tggactggtt aacagacact tatgtagatg cgatgaacat cattcacttt
     4381 atgacagata aatacaacta tgaaagtatg caaatggcct tcttaccatc taaagtaaca
     4441 gccaacatgg gcttcggtat ttgtggattc gctaacgtag tagatagcct aagtgccatc
     4501 aaacatgcca aagtaaaaac tatccgtgac gaagatggtt ttgtatatga ctatgaagta
     4561 gaaggcgact tccctcgtta cggtgaaaat gatgaccgtg ccgacgatat cgctgtaatg
     4621 gttcttaaaa tgttcaaaga caaattagac tcccataaac tatacaaaga tagtgaagca
     4681 accgtttctg ttctaacaat cacttctaac gttgcttact caaaacaatg tggtaactcc
     4741 cccgtgcaca aaggacctgt atttgatgaa aatggcaaaa tcgtcaaaga accagaattc
     4801 ttcagcccag gagctaaccc ttctaacaaa gcaaaaggtg gtttcttaga taaccttgct
     4861 agtctttcta aattaccatt ccactatgca aatgacggaa tctccttaac aatccaagga
     4921 gctccaaaaa tgttcggtaa aacaacggaa gaacaacacc ataaccttgt tggtattctg
     4981 gatggttact ttacaaaagg tggtcaacac atcaacttaa acgttcttaa ccacgatgaa
     5041 gtaatcgaaa aaatcaaagc tggtatccca gtaatcttac gtatcagcgg ttattgctta
     5101 aatacgaaag atctaaatga agaacaaaaa atggaacttt gccaaagaat gttccacgaa
     5161 aaattaatcg gttaataaga aaaaaagaac caaatctgcg aataacagat ttggttcttt
     5221 ttttatgcgt tcgaaacttc cgccgcataa gctcctgccg tgtgcccagt cactagcgca
     5281 caagtaatat tatatccacc cgtataacca ttaatatcta gtatttcccc gcagaaaaat
     5341 aatccttcca tcaacttcga ttgcatctct tttggtttaa tttcctttac agaaacccca
     5401 ccacctgtca caaacgcttt ttcaaaatca agcgtgccat tcacttcaaa agtgaaatct
     5461 tttaataact gaataaactg ctcgattttt ttcgggctta cttgtttata atcagccgtt
     5521 tcatctaagt ctgctttttc aagtaaaaac aataacattt tctcttgtaa aagcgaactt
     5581 aacgaatttt tcaaggcttt cttcggattc tcttctaaca atttatacac atctttcgaa
     5641 agttccgcag cggatacatt cgggaataaa tcaagacgca tcttcaccgt gctagcgcct
     5701 gttttcttta attctcgaag gacgaacata ctacaacgaa gagccgctgg tcctgacaca
     5761 ccaaaatgcg tgaaaatcat atccatttga tgcgtaataa tcggcttccc ttttgcattt
     5821 aaaacagaaa gggacacatc acgaagcgac gttccttgta acactttttg tttaataaaa
     5881 ggctcactag acgtaattgg cacttctgtc ggataaagtt ctgtgatggt atgtcctgct
     5941 tttttcgccc aagcatagcc atctccggtc gaaccagtcc gtggaacaga tttaccgcca
     6001 actgcaacaa tgaccgcact cgctgaaatt tcttggccgt ctttcagcgt cacccctttc
     6061 acatgtccat cctcataatc cacttgtttc acggctgttt gcatgtaaat ttttacgcct
     6121 agtttttcca tccgctgaat cattgcctca gcgacagaac gcgcgctatt cgatacagga
     6181 aacattctac cgtggtcttc ttcttttaac gccacgccaa gtctttcaaa aaagcgaata
     6241 atatcttcat tatcaaaggc atgaaacgca ctatataaaa agcgaccatt accaggaata
     6301 tgtttaataa tttcttctgc tggtcgcctg ttcgttacat tacaacgtcc gccaccagac
     6361 ataattaatt tacgtcccaa ttttggtcct ttttcaatta atagtactcg tttatttttc
     6421 tctgctgcac tgatagccgc cataagtcca gatggcccgc caccaataac aattacatca
     6481 taatccattg tcccgctcct ttactttatc cgtgtttaag tatagcaagc attcggctca
     6541 gtgccaagct tttttcacca aacaaaaaac ccaagaaaaa tctcaggttt tttgattcta
     6601 atttcgattc atattcgtaa agataagtag caatcttaga agttctagta cagctacggc
     6661 cattgcagca acataagtca ttgcagcagc acttaatact tttttcgctt gtgggagttc
     6721 tgaagatgcg actagtccgc cgctttctaa ttgaacaagt gcccgtttac tagcgtcaaa
     6781 ttcaactggt aacgtaatta attggaaaag tacacccact gccatcaaaa taatccccag
     6841 caacatgaaa ctagcaacgt ttgcaagcat tccgataatt aagaacaccc aagaaatatt
     6901 ggaactaaac attgttacag gaacaagcgc cgaacgaaaa cgcataaatg cataatcttg
     6961 ctgatcttga atcgcgtgtc ctacttcatg ggctgcaaca gctgccccgg cgatagaacg
     7021 accgcggaag ttagcttcag aaagaaaaac cgcttttttt cgaggatcgt agtggtcact
     7081 taatattcct tttgtttcat gaactggaac attcgttaaa ccattggtat ccaaaatatg
     7141 acgcgcaacc tcggcaccag ttaaaccatt tgccacacca actttggaat aatgtgcata
     7201 ggtagttttt acccgatact gtgcccaaag tggaattgcc gcgacgataa taaaataaat
     7261 aatatactga ctaaacgaca tttaatcatc ttcctcctac tacttttttt cggtgaatat
     7321 ccttatgttc ttagtataaa ttaactatca ccaagactca acctctttca ctcatcatga
     7381 ggaaattcta atgttaagtg cttatttttt atcgttttat catatacaaa ccatagaaca
     7441 aataccgtta accaaaatgt cgcataacca atttccggta agtatttttc taaccccata
     7501 taaatcggca tttggccaaa tacataatca attacatcat tatgaaatac ccataccgct
     7561 gcaatcataa agtgcccgat tcgaaaacga taaaacggcg cataaagaat tccttctact
     7621 gccataaaac catgcgtcaa aatcaatgcc acagagcccc aaacaagcat cccttggtca
     7681 atcatataaa aaatattcat accaactgcc cataaaccat acttcactaa acatacaaaa
     7741 cctagtgcct ccattaaagg ccaatgcttt ttcccaagaa aagcaactag cgccaaagtg
     7801 aagaacaaaa tcgccgttgg gctatcaggt acaaacagcc aaaagcgcgg ctctgtcatt
     7861 tgtaattgcg gtaaatacca tatgtatcca taaatcgctc caagtaaatt accaaagaaa
     7921 agtaatcgta aaaaggcccg atttgcgagt aaactatata acaatatccc ccagctccct
     7981 taaaaaatcc tagcacagca aggaaatgat gcatctttca catcatttcc atactaacta
     8041 ggatttattt cttattcttt ttccgtatcc atttgctgta aaattcgaac taacttatga
     8101 aaagcagctt catcacgtgt atccagcgcc tcatcgatct gttgtaatac tttttctctt
     8161 gaaaattggt gcacagattg ataaataagc gcatccgcca tttctttttc ctcatccgca
     8221 agcttcactg ctgtaaaagg attatcttca cgaacaagtg cgtattcagg cgaagacatt
     8281 gcctcttcaa aatgaagttc tacatacaac tcttcgtccc aatttaaccg aatatcatga
     8341 aatgcttttt ctggatcagt cgtcataatg ttacctttaa aaaataggaa cggttcggat
     8401 tcaacgccgt gagcactaag tgaaagccca cgcgcacacc cttccaaatt atcaacaaaa
     8461 tgaacatatt ttacaatttg atcatggcca gcaatataat ttaaaaccca cattgcttct
     8521 ctagtcttca tctggtgttt atttaaaaac cagcgaataa aatctttctt ctcgtctatt
     8581 gaaatggatg ccttcatctt tcctcagtcc cttcctgtat tctttttagc atttaatcaa
     8641 ataaagataa aatctctgtg tcttctggct ctagttctaa atagttacgc aaaacttctt
     8701 gtgatttcgc gtactctcct tcttccctta aaaataaacc atattccttt aagaaagtag
     8761 gattgtttgt aaagtgcgag tatgccagtt cataatttgc ttttgcttta ttatattgtt
     8821 ctgtttcctg atatgcaaca cttacgtccc agaaaatttg tggttccgaa ataacttctt
     8881 ccccaaggcc ttccactaat tcgataaccc cttcgtagtc ttctttcgca agtaataatt
     8941 tgttcaactg cataattgct tccgaatatt cttcatctag cacaattgct tgacgataaa
     9001 attcttcggc ttcttctggc aaacgtagcg taacagcaag cttcccagcc tctaagaaca
     9061 tttctttatt aaattcatct tgcgttaagc cgtcccgaag cactgcaatg gctttttccg
     9121 gttcgccgtt ctcctcataa cttttcgcta aataagagta gagcgttgtg taagagggat
     9181 catgttcacg caaatgttcg agcgcatgaa tagctttcgt gtaatctttt gcctgataag
     9241 ccgttaaacc catcccgaaa agtgtatcaa ccgattcctt atcttcgagc gcgcgttcat
     9301 agtaagataa cgcttcttca aatgccccac tagcagcaaa agcttcagcg atacgttcat
     9361 atacagacac cgcaccattc gaaataatcg ttaatcctgc ttctacagca gtttgataag
     9421 actgtacagc ggatgcgaat cttgcttgcg ataaataata ttccccaagt gcaaaatcaa
     9481 taatcggctc atttggcgcc atttgtttcg cttcgagtaa tttctgctca ctgacttcga
     9541 ataaaccttg catctgatat aaatcagcta atacgagcaa actttcaata tatgcttcat
     9601 cttctttgtt tactttttct aaatagtctt gcgcagagtc gatatcgtct ttttcaagtg
     9661 ctacttcagc tgcacggaca agcaactcgc cctcatcctt gtattttgct aatagaagtt
     9721 cgtataaatc ttccgtttca tctaggaatc caagtgtaaa taattcttct gctaaataat
     9781 attgttcttc atctgttccc gcttgcacta cttcatcaaa atatttcttc gcaagcgcca
     9841 tatcttcatg ctctaacgca tgtaacattt tattagctaa ttccatttct gcaccttctt
     9901 taataataag tcgtttttct attataccat tacttcactc ataagaaaaa gtgattgcct
     9961 ctcttaaata aaaataccag cgctgatgtg attagcatac agcactggta gaagtgatta
    10021 ttttaaaagt gagcgaatat cttcaaagaa agtcgggtaa gaaacagaaa ctgcttctgg
    10081 gcgttctaat tccacatcgc cttcctcgac aagaagtgct gcaatttgta gcatcatgcc
    10141 aatacggtga tccccgtagc ttgttacatt ggccgcatga agtggtgttt tcccgcgaat
    10201 aattaagccg tcttcggttg gagtaatatc tgcgcccatt ttgtttagtt ctgtcgcaac
    10261 cgcatcaatc cggtttgttt cttttacttt tagttcagca gcgtctttaa taatcgtcgt
    10321 tccttctgct tgtgtcgcta aaagtgcgat aactggaatt tcgtcaatta aacgaggaat
    10381 aatgtcgcca ccgatttccg ttccttttaa atcgctagtt ttaactacaa ccgtacccgc
    10441 taatttacca gtacttctgc tagaatcttt gacaactaaa cttccaccca tttgctcaac
    10501 tacatcaaaa atccctgttc tagtagggtt caagccaaca tgcgtaagtt caatttcact
    10561 gccgggtgtg attaagccag ctacgataaa gaacgcagca gaggaaacat cgcctggaac
    10621 cgtcatttct tgcccggtaa atgtttggcc acctttgacg cgaatggtta agccgtccat
    10681 ttcaatttca ccgccaaatt ggcgaatcat gtgttccgta tgatcacgag tcttttcttt
    10741 ttcatggata atcgtttcac cttctgcttg taaagctgca aaaataatcg cgctctttac
    10801 ttgtgcacta gcaactggca tatgatattc catgcgtttt aatgattgct tcccatttat
    10861 cgtaattgga gcaaattcag agccatcttt gccatgcatt tttgccccca tttgttgcag
    10921 tggtagcatg acacggttca tcggacgttt cgcaattgat tcatccccta aaatgactgt
    10981 gtcaaaatct cggccagcta aaatgcccat cattaaacga atcgttgttc ccgagttacc
    11041 aatatcaagt ggaccatctg cctgctttag cccatcaaaa ccagttccgt gaacaataat
    11101 ttcttcttcg gtttcttcaa tttttacacc caatgcttta aatgccttaa ttgttccaag
    11161 gcaatcatct gcacgtaaga aatgacgaat gaccgttttt ccttctgcaa tagccccgaa
    11221 cataatgctg cgatgggaca ttgatttatc tccagggact gtgattgcgc caaccagccc
    11281 ttgtttattt gtaattaatt tcatcgtcat ttctctccta ttcgtaatgg catgtatagt
    11341 tacttcttgt ttcaatgcaa cgtttcgccc ggtccctgtc ttcatccgat tggaaagtaa
    11401 tttgtaacac accgaaaata tcttcccgtg tttccaaaat cttgatgttt gttaaactga
    11461 tttcttcttc gcccagatac ctagtcactt cagaaattac ccctggataa tctggtacat
    11521 cgacaaataa atcgtaaaaa gatggaatcg caccaccttg atgaactgga agtgaatctc
    11581 gaaattcttt tgccccatca aaaaaggcat atatagaact cgcgtcttca ctttcaagca
    11641 tctcaagcgc ttcgttcata ctgtctcgcc aaatcgtcag ctgtttcgtt aacgtttttt
    11701 ggttgctaat agaaatatcc gtccacattc ttggatcaga agaagcgacc cgtgtaatat
    11761 cacgaaatcc gcctgccgca agtcgaaatg ctgcaggatg ttcttctgta aagctttgcg
    11821 tctggttcac taaagccgcc gccacaatat gcggtaagtg gctcaacatg ccagtaattt
    11881 catcatgctc atttggtgat aacactaaga acttagcatt cgtaccagac agccacgtcc
    11941 taagttcagc cactttgtct tctgctacat ctttcgttgg tgttaacaaa taataggcat
    12001 tttcaaacaa cagttcttta gcagcacgga caccactttt atgcgaacca gccattggat
    12061 gaccgccaat aaacgtaata ccactttctc taagtgccgt ggatgcttcc atgatggttc
    12121 cttttgtact acctgtatct gtaacgacca cattttcctt taaacgcagc ccaggtaaac
    12181 gcgttaataa ctgttctgtt tcttttaccg gacaacaaaa aacaagtaaa tctgcttttg
    12241 gcccatctat taaaatactt tcgccaattt cgtcaatcac accgagagac tttccaactt
    12301 ctaacgaatg ataggaaacg tcaattccga tgatatgtgc ttctgggtgt ttggctttaa
    12361 tcgcaagggc aatagaaccg ccaattaacc caagcccaac aataactacc gtccctttca
    12421 ttcaaaaacg cctccaaaca cttacaataa tttttctaaa agtgcaatta ccgcactatt
    12481 ttcctcttct tttccgatcg taattcgaac agcagttgga aaaccaagcg ccgcgccaga
    12541 acgcgtaata tagccatttt tttccaagta gctaaaaata gttcctgctt caattcctaa
    12601 atctattaaa acaaagttgc cattcgctgg atacagtttt acttgctcaa aacgtttcgc
    12661 aaacgcttcg tattgtttaa ttccatttgc attagaagtt cggcatgctt caataaaagc
    12721 ttgatccttt attgcttcta ttgctaattt ttgaccgatg ctcgttgtat taaacggcgg
    12781 acgaacgata tttagttgct caatgattgc tttatccgca ataccataac caacacgagc
    12841 gcttgccaaa ccataaattt tactaaaagt ccgggtaata attaaatttt tataagtgcg
    12901 aattagtttt tcatgttttt caggctgtgg cgtcacatat tcaatatatg cttcatctaa
    12961 aacaacaagt acatcacttg gtactttatc taaaaacgct tgaatatctg ctaaatcaat
    13021 gtaattccca gttgggttat tcggattgca aacccaaaca atcgtcgtat tgtcatcaat
    13081 cgcattcaac ataccatcta aatcatgcgc accatccaca agtagcggaa tttctcttac
    13141 ttcggcgcct tcgattaacg cattttgacg atactgcaca aatgtcggtg tcgccatcac
    13201 tgtatttttt gtcgtatcca gtaaaacccg cgtcaacagt tcaatcagtt catccacacc
    13261 agctgtaaaa atcagttcct cttcttccag ttggtagaaa tcagcgacca ctgtacgcaa
    13321 gctagaagcc cagccatcag gataaatttc tgtttccaca ctagaattgg cttgaagctc
    13381 cgccactttt ggagaagttc ccagtgggtt ttcgttagat gatagtttgg tgattttcgt
    13441 taaaccaagt tctgccatca cttcttcttc gcgttttcca ggtttataag aagatagacc
    13501 tgtaagtgat tttttccatt tcattacgca tcctcctctt ttactaaatc tgggcgcagt
    13561 acttttgctc ctcgtaagta gacatggttg atggcttcga gtggtttatg tagatctgtg
    13621 aataccatga aacgaatgca cattggaagc gaatttggca ccggaatttc ttgcatcccc
    13681 atgacaggaa catattcaaa gccaggtgtt tcacgcaccg ccttagctgg aaaagcggca
    13741 aaaatatctt ctgtcactgt aatgatgacg gatgttagtt gctcactatc tgttatttca
    13801 ttttgcgtta aaatttcttc aaataattct ttcgtcgctg cataaattgc ttccggtgaa
    13861 ttagtttcta ttgtcgttgc ccctcgaatt gctctcaaat gccattccct ccatttcgca
    13921 tcacacgttt gtaagtttca aaaatcaaat catcttccgc tttaaaaata accggttttc
    13981 caatttcttc gagtaaaacc atacttattt cattaaaagt tgttttttta tcatgacgca
    14041 tattttccag tattttatta aatggaacag ttgcatcaaa tgtcgtatca tagcctaact
    14101 gttttagcca cgttttaaat tctgctaaat cgaaatccag tccgtaaatt gtctcactca
    14161 tcgtgagtgc ataaatcatc ccataagtaa tcgcctcgcc gtgcagccac ttgccaaagt
    14221 ttccgtaggc ttcaagtgca tgaccaaatg tgtgaccaaa attcaaataa gcgcgcacgc
    14281 cttgctcggt ttcatcttgc gcaacgatat ttgctttaat ttcaatccca cgttgtaaaa
    14341 acggcgtcaa atccttcgta taaaagtctt tcggctccgt aaatgtatcc attaaggccc
    14401 gtagtaacgt ctgatcgcta ataagcgcat gtttaatcat ttccgcaaaa ccagagcgca
    14461 tttcccgttc tggcaaggta gcaaagaact gggtatcata aatgactgct tctggctggt
    14521 aaaagttccc aatcatgttt ttgccaagcg gatgattgat cgcaaccttg ccacccacgg
    14581 cactatcatg cgcaagaacc gtcgtaggca cctgataaaa aggaatgccc ctcatatacg
    14641 tagccgcaac aaaaccacct aaatcaccaa taacgcctcc accaaaagca attaaaaccg
    14701 ctttacgatc aagacctgtt tcaatcaatt ttgtcatcac atcttcatat acacgaaacg
    14761 ttttcgcttc ttccccgttt ggcgccacat aataagtgac tacaggtaaa tcagctagaa
    14821 ccgcgtcaag ctttgcttga tgaagttccg ccacatgctc gtccgtcaaa acaaacacgt
    14881 gggaaaattt agctaggctc tccgtccact tttcccggac atcttctaat gcgaattcat
    14941 taatatatac tgggtatgtt ttacttttag cacggactgt aatttctggc atgtttaaaa
    15001 ctccttcgtt aagtttcggt gttcctccac atgtttttta agtgtgtcaa aacgatcacc
    15061 atcaaatttt tctaacacag caactgcaac ttcccaagcg acaacagctt cagctaccac
    15121 acttgcagca ggtactgcac aactatccga acgttctaca cttgcattaa acgtttcttt
    15181 tgaatcaata tccacacttt gaagtggttt gtataatgtt ggaattggct tcattacgcc
    15241 acgaacaaca attggcatac cattggtcat tccgccttcg aatccaccaa ggttatttgt
    15301 acgtctcgtg tagccatctt ctttactcca taaaatttca tccatcactt cactaccagg
    15361 ttttctagca gcttcaaaac cgacaccgaa ttcagcgcct ttaaatgcat taatacttac
    15421 aatcgcacgc gcaatttttg catctagttt tttgtcccac tgtacgtagc taccaagtcc
    15481 agctgggaca ccaccaacta caacttctac gataccgcca atggtgtcgc catttttctt
    15541 cgcatcatca attttttgca tcatttcttc tgccgctacg ccgtctaaac aacgcactgg
    15601 agaagcttcg gatgtttctt ggatttcgct aaccgcgtaa tcacgtgtta agttcgcacg
    15661 agttccacca atttcaagta catgaccagc tacttcaatg ccaagttcat gcaataattt
    15721 tttcgctact gctccagctg ccacacggac agtcgtttcg cgcgcgctag aacgttctag
    15781 tacgttacgc atatcgttat gaccatattt cataccgcca actaagtccg catgtccagg
    15841 acgtggacgg gatacgcgac gggatttttc atttttttct ggaactggtt caatgctcat
    15901 aaccgtttcc caatgcttcc agtctttatt ttcaacaaac attgctacag gtgcgcctaa
    15961 tgttttacca tgacgaatcc ctgctgtgat ttgtacttgg tctttttcga tacgcatccg
    16021 tgccccacga ccatgcccac cttgtcttct ttttagttct ttatttacat cttctgctag
    16081 taaaggcatt cctgctggca acccttcaat aattgttgta agccccggtc cgtgtgattc
    16141 tcctgccgtt aagtatctca tctgctcatc tctccttttt ctatttcagc tagattttct
    16201 agcgtttata ttttagcgct ttaaagtata tgtgtaatat cttaacatat gccacgcgag
    16261 aaaacaatac tttcgtttca ttctttcatc ttaccaaaaa accgcatgaa atggtaattt
    16321 ctctataaaa aaagagccta ggtttcccta aactctatac tatgttaaat ccaagtgtcg
    16381 attgcctttt gataacttaa aatttcctgc ggtgcaaaaa acaactgaat ttcccgtttc
    16441 gcactttctg ggctatccga tccatgaatc acatttcgat ttgtatgtac cgcataatca
    16501 gcgcgaattg ttccggggtc agcttctaac ggatttgttt tccccatcat tcggcgtgct
    16561 gttgcaatcg catcgtctcc ttctaacacc atcgcaaaca ctggtccaga agtaataaat
    16621 ccaattaaat cctcgaaaaa agattttcca atatgttccg cgtaatgttt ttctgctagt
    16681 tcgcggtcaa tttgcattaa ttttccagca actattttta agcctttttt ctctattctt
    16741 gtgacaattt caccaataag tcctcgttct acaccatccg gcttaaccat tacataagtt
    16801 tgttccataa agaatcctcc ctcacgttaa taatttcttt tatctaaaac acgaacgatt
    16861 tgttttaatg gttttaattc aggcacttgc ggcaaagaat ccagtatttc tacagctttc
    16921 tttaagtaga ctgttgctac atcttcggcc tgttttgcgc ccgctttttt gacttcttcc
    16981 actaaaacag caatttcttc tgctggagtt tcctccgtaa cctggctgat gcgttttttt
    17041 agaaaaggat cttccattgc aaagaatact ggcaatgtca catttccttg tcttaaatct
    17101 tccccagctg gcttaccgag ttctttttct gttccaacaa aatcaagtac atcatccgta
    17161 atttgaaacg ccatgccaac ataataacca aaacgatata acttctgata atcagcttca
    17221 ctttgaccag aaacaacacc accgagtccg caactagctg ctatcagtaa agctgttttc
    17281 cgtttaattc ggcgtaaata attacgcaca ctttggtcaa aattatattt atcttttaat
    17341 tgttcgattt cacccgtaga aagctccacc gtaacatgtg atagcatttt atgcgcagca
    17401 acgtctttaa tttctgtcat atattccagt gatttggcaa acaaaaaatc accggtatac
    17461 atcgcaatat ggttgcccca cttcgattta atcgtctcgc gtccgcgtct taaatccgca
    17521 ttatccacca catcatcatg cacaatcgac gccatatgaa ttaattcaat cgctacactc
    17581 gcatttttta ctgcatcaaa gtctgcatta ggagcaagtc ttgctgataa gcaaacgaac
    17641 attggtctaa ttcgttttcc accagcctct aataaatgaa gtgctgcatc agaagtagtt
    17701 tcagcagctg cgccagaaag ggccttttta agttcttttt caactgagtc aatgtctttt
    17761 tgcatatttg catataaaaa gttaagtttc atgcttgcca ccttattgtt ccttcttttt
    17821 aaatccaaag tgggttgcac tcgcgccgcc actgtgtgaa atatatctta cgtatgaaaa
    17881 tccggcttct tgaaacattt ccgcaagtct agccattcct ggaaactcac gcgttgattc
    17941 ttgtaaccag ctatattctt tataactttt cgcaaaaaac ttcccgaaaa caggcattac
    18001 atagcgaaaa taagcattaa acacttgttt ccagccagga atattgggtt gagacgtatc
    18061 aatacatgcc agctgtccac ctggttttag cacacggtac atttctcgca gcacttgcat
    18121 ataatccggt acatttctaa gcccaaagcc aatcgtcaca tagtcaaaac tattatctgg
    18181 aaaaggtaat tccattgcat tcccatgaat aagttctaca ttgtgcaaat ccgcttcttt
    18241 tactttttcg cgaccaacct tcagcatatt ttcactaaaa tcaagccccg tcacatgacc
    18301 ttcaggacca atttcttccg ccatcataat cgaccaatct gccgttccac agcaaacatc
    18361 aagaacattc gtcccttttt gaacacgcat tagcttcatt gtctctttac gccatttcac
    18421 atgtagttta aaactaataa cactattcat tcggtcataa cttggagaaa ttttctcaaa
    18481 tactttatgt actttttctt ctttagtttc cgtcatatcc cgaatctcct tctatttatc
    18541 agtcgttaat aacttcgatg attctttttc ctagtatatt agaaagcggt tctgatttat
    18601 ctttcaaccg tttcacttca cttttcacat cacgaataat cgctactaac cagctttcaa
    18661 aattagatac ggcttccttc gcaaaatagc catgatcaaa cgcccgcttc aatctggacg
    18721 caccaatttc tttgtaagta gcaagttctg tttggagtct tttgagcaaa aagaactgac
    18781 aaccaagcgc gataaatgtg tcatctttca taaaatactt cgcaaacttg gcaaaaatag
    18841 ccgcatttgt taacgtaagc tgagataaat actcttcatc tgttgcgaca tgtaactggt
    18901 aaatattggt ttttgctgtg tttgtttctt gaaccccgct ttgcaatgct cgaagcagtg
    18961 gaatcatttc taattcagca agtgtgcggt aatagagagc actataaaaa tccccagcga
    19021 gaaccgtcaa ctcttgctcc ttacgtgtta gctgtacaac atcgcctggt tcatcaattt
    19081 tttcatgtgt atcatgcgct aaaatcatgt acagcgttgc actaacgacg cgatatgcag
    19141 aagcatcagt caaatcagag ccagaaatcg cttcatgaag aaatagcatt tgatctttgt
    19201 ccatttgccc gccttcatta ttctcttgta aatattgata gactgcttgc tcatgtacca
    19261 actgctccac ttcctttagc ccagcctctc ttgcctgata agtcatttaa caatcccctt
    19321 tgaatctcct tattatgtaa aaaattatac cataaaggat atttaattat gcttaattaa
    19381 agctaaaact tcacttctaa gcttatcgtc atttttaaaa gcaccacgaa cagcacttgt
    19441 aattgttttt gttccaggtt tatttacacc acggatagtc atgcacatat gctctgcttc
    19501 catgatgacc attacaccca aaggttttag tttttccatc ataatttctg caacagtcgt
    19561 tgtaatccgt tcttgtaact gcgggcggcg acttacatca tccactacgc gagcaagttt
    19621 actaagacca gcaactcttc cattttgtgg taagtatgct acatgagcta ctccaaaaaa
    19681 agggacaagg tgatgttcac acatagacga aaagcgaatg tctttcacaa gtactaattc
    19741 ttcatgttgt tcttcaaaaa tagtatcgaa atgaacagaa ggatcttttt tcagcccagc
    19801 gaaaacttct tcatacatac gagctactcg cattggtgta tcaatcagtc cttcacgttc
    19861 tggattttct cctactgctt ctaaaataac ttttaccgcg tcagcaatct tttgcttgtc
    19921 tatttgctcc atccttaatt cccctatctt tttagcatta tataccttgt atatcttaac
    19981 acagccaaac ttcaaggtaa atttaatttg cttgaataag tgataataat aggggttttt
    20041 ttgctttcgt aagtatattc cctatttcta aaacagaaaa ccactaaaaa tgggcataaa
    20101 aaaactagcc tagcttaatt ataaaattaa ggccagacta gagttagtgc ttaaaagtct
    20161 atgtagctta tttaacagct tctttaagcg ctttaccagg tttgaaagct ggtactttac
    20221 ttgcagggat gtcgatttct tctttagtac gagggttacg acctttacgg gcagcacgtt
    20281 cacgtacttc aaagttacca aatccgatta attgaacttt ttcaccttta gataaagaag
    20341 tttgaatagt ttcgaataca gcttctactg ctttcgctgc gtctttttta gaaagatcag
    20401 ctagttcagc aacgctattt actaaatcag ttttatttgc cattgtgttt tcacctcctt
    20461 cacagaatac tacaaaataa gcaggtacaa gatatacctg tatttctctt tttttccaaa
    20521 aacaaaaatc aatttggaaa tctaaggaga atcatgactg aaatggctta actacaagcc
    20581 ttaacagtaa ttctgataaa agattatcac ataatcccta caactgcaag gaataatgcc
    20641 aaactgacac cgtttcttaa cattttcaat cacaaatatt ttctttaaat gcttgaaaac
    20701 gtgatagtat caacctgtta tccataatac taacttggaa gccttagaat agcaagcgat
    20761 accaccacaa ttagctaaaa tagttctttt ttcataaaaa tatgggtaaa tttgcgtcta
    20821 ttacctgaaa actctaggtt tctgagccta gttttattct aacatttctt tttggaaagc
    20881 tgctttttct gccgcagtaa ttccaattcc tttttctaaa taattagcta ctgagccata
    20941 ttgttttttc atttcatcaa aggcaatttc caaatattca ggacgagctt ctgccattgg
    21001 cctgaacgtt tctaaatcaa ttttttcggt tccattcgaa aagagcgcca cgattcctcc
    21061 catttcttgt aaaatgtcgt cctggtagcg attagtgatg gcgtaatcgc cgaaaatcgt
    21121 tttttctggt acatctaaca atgttagtaa taatgcccct aggacgcctg tacggtcttt
    21181 tcctgcagtg caatggaaaa cgaacggcaa tccagctttt gcatcttcta atacttctgt
    21241 aaaaatttct ctaaagcctt ccactgattg cacaaacacg cggtagcttt cacccatcag
    21301 cggttcataa atagttgtat catttgttac cggtagcttt gtttcttcat ttttggcagt
    21361 accaatagga atatgtttat ttagcacacc ttcaattgca ggcgtaggtt gtgcttgtac
    21421 ttccgaacta ctgcgcaaat cacaaatcca tttaatatgt agtttttgaa gcaaagctgc
    21481 atcgttctca ttaatattca ctaaattaga agagcgatat aacttacccc attttacatg
    21541 cttgccgttt ttggatgcat aaccgcccat atctcgaaaa ttgaatacac tttcaagtgg
    21601 caaaattcgt tctgaaacag tggttctatc tccgtttggt gtctctaaaa agaaataaat
    21661 aggaatatcc tttgtgtcat atgaatagtg atcaacatca tttgttactt tgaaaacagg
    21721 atcactatta tcctctagtt taggactact acttacaaaa acgactgtgc cttcgctgac
    21781 ttcttctttg ttccaagtta gtgttacggc tttatctgta cgagtaactt ccatattatc
    21841 cacctacttt ttattatttg gctcttctgc tacattttag catatttcat aaaaaaagag
    21901 ccaaaataag cggatagccc attctgactc tttctattaa aatgattctt tttcgatctt
    21961 tttttcgcga cccattaata aatcaactgc ttcgcgagca tctttatttt cgaataaaat
    22021 cgcgtaaatc gattcggtaa ttggcatatc aatatctagt tttttcgccc aaccatgtac
    22081 tgctttagct gttcgaacac cttcaacgac catgcccatt ttttctaata cttcatctaa
    22141 attctcgcct ttacctagca tattaccagc acgccaatta cgtgaatgca cactagtaca
    22201 agtaacgatt aagtcaccaa tacctgtcaa tccgtaaaat gtttgcggat tagagccaac
    22261 agcaacaccg agacgagtga tttctgccat cccgcgagtc attagtgccg ctttagcatt
    22321 atcgccataa ccaaggccgt cagaaattcc tgcacctagt gcgataatat ttttcagcgc
    22381 gccaccaatt tctgcaccaa tcacatcatc attcgtataa atacgcaaat tattattgat
    22441 gaaacgatct tgaacaattt ctgcagctga taaatcttta cagctcgcac aaagtgttgt
    22501 cggatgacga agcgcaactt cttccgcatg acttggtcca gaaagaacaa caagcgcttt
    22561 acgtttggac gcatctattt cgtcttcaat cacttcggac attcgaagat ttgtttctgg
    22621 ttcaatacct ttactcacat gcactaaaat ggttggttct tttagcgctt catttaactg
    22681 cttacaaacg attcgcatcg catttgttgg aatagcaatt acgacaattt ctgcaccatc
    22741 aatagcttca tcaagtgaca atgtcgcttt tacctcagtt ggtaaaataa tatctggcaa
    22801 atagtgacta ttcgtgtgcg attcgttaat ttcattcaca attttatcta agtttcccca
    22861 aataactggt tgatgattat tatcagctag gacaagtgca agacctgttc cccaacttcc
    22921 agcgccaaga atagctactt ttttctgtgt cattatattt ttcctcccga aaactttact
    22981 tacgcttacg agcaatcact cgaattggcg taccctcaaa cggaaatgcc tctctaatcc
    23041 ggttttctaa gaaacgttca tacgagaaat gcattagttc tggatcatta acaaatacaa
    23101 caaacgtcgg tggttttaca gccacttgtg ttgtatagaa aatcttcagt cgtttacctt
    23161 tatccatagg tgatgggttc attgcaacgg catcactaat aacatcattc agcatacttg
    23221 attgtacacg taatgaatgg ttatcgctta cttgattaat aagtgggaat aggttattta
    23281 agcgttgttt tgttttcgca gatacaaaga caattggtgc atagcttaag aattggaatt
    23341 gctcccgaat atcttccgtc catacgttaa ttgttttttc atctttgtta attgcatccc
    23401 atttgtttac tacaataata atcgcacgtc cggcatcatg cgcatatcca gcaattcgtt
    23461 tatcttgctc acgaatacct tcttctgcgt tgataaccac aagaacaacg tctgagcgtt
    23521 caattgctct cattgcacgt aaaacactat atttctctgt gctttcatac actttcccac
    23581 gttttctcat tccggctgta tcaatcatga cataatcttg gccatcgaaa gtataagttg
    23641 tatcaattgc atcacgagtt gtacccgcaa tatcagaaac aataacacga tcttctccaa
    23701 gcagtgcatt taaaatagaa gatttaccaa catttggtcg accaatcaaa ctaaatttca
    23761 ctgtatcgtc tggatattct tcctcttctt cttttggaaa atgagcccga acagcatcaa
    23821 gcatgtcgcc aagccctagc ccatgtgaac cagaaattgg atacggttca ccaaacccaa
    23881 gagaataaaa gtcataaatt tgatctcgca tttctgggtt atctacttta ttaatcgcta
    23941 aaacaattgg tttattagac cggtaaagaa tttttgctac ttgttcgtct gcatcggtaa
    24001 ccccttcacg accattggta ataaaaataa ttacgtctgc ttcatcaatt gcgatttccg
    24061 cttgtgcgcg aatttgctct aagaatggtt catcggaaag atcaatacca cctgtatcaa
    24121 taatgttaaa ttcttttcca agccattccg ctgaattata tatgcggtca cgtgtcacac
    24181 cgggaacatc ttccactatg gaaacacgtt caccaacgat tctgttaaaa atagtcgatt
    24241 tgccaacgtt tggacgtccg acaatcgcta caactggttt tgccattatt tcaccttctt
    24301 ttttctcgaa tcctatttat caaactttct ttagtttatc agtaaaacag cttactggca
    24361 atgaaaagtt cgatttgaaa aagaaaaaga gcccatggga acagtctccc taggctcttt
    24421 tgcgtacaat tatttatcgt cgttttgaag accttttaat ttatcaccaa ttaaatcgct
    24481 catttggaat ccagtgtttt cttctggaag ttcataatca gcttcttcaa ctggagcatc
    24541 ttttaattct ttaatgctta atgataaacg tttgtctgct tcatttactt caagtacttt
    24601 cacttctact gtttgccctt ctgaaaggac ttcttgtggt gtcccaatat gttcatgaga
    24661 aatttgagaa atatgaacca aaccttctac tcctgggaat atttccacaa atgcaccaaa
    24721 agtaactagg cgtactactt ttccttctaa aacagaacca actggcgctt tttcggcaat
    24781 gccgtcccaa ggtccaggta aagtcgcttt aatagaaaga gaaatacgtt cattttcagg
    24841 atcaatccca ataactttaa ccgttacttt ttgaccttct tctaacgctt cttgtggtgt
    24901 tgcaatatgt ttataagaaa tttgtgagat gtgaactaat ccgtccacgc caccaatatc
    24961 aacgaatgca ccaaaattag ctaaacgttg aacagtacct tcaatcacgt cgccttcttt
    25021 gatttcgctc agtagcgctt gcttttgact agctttttct gtttccacaa ctgcacgatg
    25081 gcttaaaatc actcggttat tttctggttc aaattctact actttgaaag taagagtagt
    25141 tcctttgtaa tctgcgaaat cttccacaaa atggtcttcc actaaagaag ctggaacgaa
    25201 cgcacgaaca cctaggtcga caactaatcc acctttaaca acatcactga ctactgcttc
    25261 aaaaacttca ccagattcga atttagcttt aatatcatca gatgcttttt ctgcatccac
    25321 ttttcgttta gataaaacaa gtatatcgtc ttctacttta gtgacaatca aatcaagtgt
    25381 gtcgccaacg ctcacaacgt cagaagctgt ctccacatgt atattggaaa gttcacttat
    25441 tggaacgaca ccatcaagtt tgctacctgg aataccaaca taaacttgtt tatcttccac
    25501 gcttgtaact gtgccagtga ctttgtctcc ttcttcaaaa tttctaactt ccacatcaaa
    25561 taaatcttca gacatgtgta gccctccatt cgttagtcga attttaggaa tttctaattc
    25621 agaagcaacc ttcacgcttg cttcatctgc ttgactagtt ttcctagata ggcaaattcc
    25681 gattaaataa agaaaaatat caaatacacc ttctgtaaaa ctgatcttcc agctagaaaa
    25741 tcctttcaag atacttttca caaagtaaaa aatctctctt ataacatcct acaaatccag
    25801 acatttgtca agctctttta aggggttgga aaagcctaca gggcgtgaaa tcgcttcgtt
    25861 tgtttagcct ttcacggtta aattaaaaaa gtgctacatt tccatttagt taagaaaatg
    25921 tagcactttt ttgctaatta ttgattttta gttctgctag tgaaagaatt ttattggcta
    25981 cttcatcaat cgacattgat gttgtatcta cttcaatggc atcatctgct ttttttaagg
    26041 gggagtgtgt tcttgtataa tctaaatgat ctcgttcttc aatttctttt ttgagttggc
    26101 ctaagtctcc agcaaaacct ttcgccatat tctctttata gcgacgttcc gctcgttctt
    26161 ctacgcttgc tagtaagaat atttttagtt cggcgttagg aagaactgca gtaccgatat
    26221 cacgaccatc cattacaatt ccgccttctg tagcaaaaac ttgttgacgt tcttggagtg
    26281 cttcacgaat agacgggtgt gcggcaacga tagatacatg attggtcact tctaaagaac
    26341 gaatcacttc tgtgacattt tcttcaccta caaatacttg ttgtacttcg ccaggttcaa
    26401 aacgaataac tgttttttgg agtaaagtag ctatagcttt ttcgtcttca tatgcgatgt
    26461 tattttttaa agcgatatag gttactgcac gatacatggc acccgtatca atatagacaa
    26521 agcgcaattt ttttgcaacg attttcgcca ccgtgctttt cccagccgca gccggtccat
    26581 caatcgcgat acatatcttt ttagtcataa aataaaactc cttttatctg aaattggttt
    26641 gattaatttc ttcttgtgat gctaaaagta ccattaattt catccgtgct tttttgctat
    26701 cgtaatcttt tcctaaaata acgccacgat tatacaagtc aaacgtgcta ccttcataat
    26761 catatgtagt atatacattt ccttcttccg cacttgttgt tatgacaact ggaattcccg
    26821 catctaatgc tctgataata gctggcatca tttttggcgc cacttgccct cgtccaacac
    26881 cttctaaaac gattcctgat acgccactat ctatcgctgc atcaataaac aaaccatctg
    26941 caccaatata acatttaatc acaaccactt ctggtaaatc aaggcgaata tcaaaacact
    27001 catgctccag tggtttttga tacagaaaaa cttggtcatt atcaataata cccagatagc
    27061 caaacccaaa agcactaaaa ccttgtatgt tggatgcatg aacttttttt acatatctcg
    27121 ctgcaaaaat tcgttcattg aaaacaacga ctgtcccagc ttgacgtaaa tttatttcac
    27181 acgctgtata aattgcatga cgaatattaa cataggcatc tgtccctggc tcctcaggtg
    27241 ctcgctgaga tccagttact acgattggtc gcgcatcggt tactgcaaga tcaagaaaat
    27301 aggctgtttc ttctaatgaa tctgttccgt gcgtcactac tattccatca tatgtttcat
    27361 ccatgaagat agattcgata agttgcttca gactgattaa atcaggtagc gtaatgtgca
    27421 tagatggtaa ttggaaagta gaatagatat caatttgaat ttctgttggt aattggcata
    27481 atgcagctaa ttcttctcca gataattctc ctgatgcaag ttttcctgat gctgttttct
    27541 tacttgcaat tgtaccgcct gttgtaatta gtgctacttt tgccatggtt attcccccct
    27601 acattttcct tttaaacaaa caaatgagtc tcggaagcgt ttcccagacc cattcagtgt
    27661 tgtttattac tgtggaattg ttagaactgt accaactgga acattgtcac ttcctagtcc
    27721 attggcttgt ttaatttttt ctactccagc agctgccccc gcttgtccat atgttgaacg
    27781 tgcaatacta taaagggtgt ccccagcttt aacagtatga gatcctccag ctttttgctg
    27841 tgaggcttca ttcgcttttt gctgctcagc tttttcagca gcagctttct cggcagcagc
    27901 tttgtcagcc gcagcttttt cttcggcagc ttcttgttct ttttttgcat ttgcagcttt
    27961 cactgcatct tcttcttgtt ttttcttatc tgccgcagct ttttcttcgg cagctttttt
    28021 ctcttcagct gccttttcag ccgctgcttt ttcttcggca gcttttttcg ctttttcttt
    28081 ttcttcttta gattgcgtgt tgtcagatac atttacggtt gattctgttt ctgttttcac
    28141 ttcatttgat gaacccatat tttgtactgt tacaaataca atcacgataa cgattggtat
    28201 taatagaaaa aaaacaatca ataaattaag taatgggtat ctaaaaatgg ttttcttttt
    28261 tcctcttctg ctatcagaac gggataacat tggcggttca ttgttgaatt catcttgacc
    28321 ttcagaactc atatcataat cagccggttc ttcgtattcc cgtttttctt ttcttgtttt
    28381 taccactcaa agttcctcct ttagtgcttt ctaaacttat cctatgcact attattggca
    28441 cagagaagtg ttacatatga tgttaataaa tgaaatacct ttgaaataat tatacccata
    28501 aacgcaacat acaacaacac ttaaaccact tttttagaaa aaaaagcaag aattattata
    28561 att
//
LOCUS       DABQVC010000010        27833 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.010,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000010 DABQVC010000000
VERSION     DABQVC010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 27833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27833
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.010"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..722)
                     /locus_tag="IBJ56_000308"
     CDS             complement(<1..722)
                     /locus_tag="IBJ56_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAM3416593.1"
                     /translation="MDISSTEIWDAIRRNSYLLYYQPKVDAKTNKIIGFEGLIRLKTA
                     TTILAPIDFFDDIVLLNATREMQDFVAETAIKQINQLGGRFSISINIPAHYVASSTYM
                     TFLHDYVKEHLKYPECLEIEIIERGEITELAIADKNLRKIKDLGVKVSMDDFGKGYSS
                     LAYLRSLPIDIVKTDMSFIALLKTDRKQQIIIRAIVNLCHDLGGKVVTEGVEDMEQVE
                     KLREMKVDYFQGYYFSRPLPME"
     gene            910..3264
                     /locus_tag="IBJ56_000309"
     CDS             910..3264
                     /locus_tag="IBJ56_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HAM3416594.1"
                     /translation="MKVNKFFKKTTHVLLVAGLTIGLTAPFTGTTAQAAADTVPIQIL
                     GINDFHGALETASKDASGSPIGGADYLATNLDNATNSFLQANPGATTDNAIRVQAGDM
                     VGASPAVSGLLQDEPTMKVLQKMNFEVGTLGNHEFDEGLPEYKRILDGVSTNKFGPIV
                     EAYPRVKSDMKIVAANVVNKGTNTVAEGFLPYYVKEIDGVKVGFIGIVTTEIPNLVLA
                     NHIKDYDFLDEAETIVKYSAELRGQGVNAIVVLSHVPALSTGNPNTGTKQDVAGEAAN
                     MITKANELDPNNSVDLVLAGHNHQYTNGLVGKTRIVQSYNNGKAFSDVTGELDKTTGD
                     FVTPPDAKITYNTRSVTPNADITAVTEDAKSRIEGVINETIGLANKDVISRDTNPDNK
                     AIDDKESELGNMITDAQRYMANKAGADVDFAMTNNGGIRSDLTTRLANGQNEITWGAA
                     QAVQPFGNILQVVEMTGADILEALNQQYLSNQTYFLQISGLKYTFTDTDDLDHAYKVA
                     SVTTEDGTPLKADQKYKVVINDFLFGGGDGFSAFKKANLVTAIDPDTETFINYIKDQK
                     AAGKVITAQKEGRKVYKSQAEIDKEAEDAAIKAIKDATKINKLAEKDKTLTGTTLPGA
                     TVSVQKATANARMALAAGPNATADANGKFSVDVTSLNLKKGDQITTTITDPNGYSTTF
                     QATVQAAATTPPDNGNGGTDNGNGNGNNGGTDGNGGTNNGNGSGTNGGTTTTEDPTTT
                     TPNTSTTGTSANTSLPTTGDTAGFATVFGIVLTTTALYVLRKRS"
     gene            complement(3302..4030)
                     /locus_tag="IBJ56_000310"
     CDS             complement(3302..4030)
                     /locus_tag="IBJ56_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HAM3416595.1"
                     /translation="MTKIWIDAGHGGKDPGASGNGLVEKNWVLATAKQLQIELVKAGF
                     EVGMTRTNDTFLELRERAKKANSFKANLFISLHFNAGGGKGYEDYIYTSVPAKTVEIQ
                     KIIHKNIIAKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQ
                     TDYCLGIVAAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKT
                     LNLTTTKGVPGSWVLKTEVNTGKR"
     gene            complement(4011..4433)
                     /locus_tag="IBJ56_000311"
     CDS             complement(4011..4433)
                     /locus_tag="IBJ56_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin family protein"
                     /protein_id="HAM3416596.1"
                     /translation="MEVILKIGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLA
                     SGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISI
                     LENFVRMGMKVPEVLKNLILIFDSKSGDEEEKHDKDMD"
     gene            complement(4452..4988)
                     /locus_tag="IBJ56_000312"
     CDS             complement(4452..4988)
                     /locus_tag="IBJ56_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416597.1"
                     /translation="MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKATWNE
                     KETTAGAEQKANTALNSAKDYVDTIGKGTVIFKGANIMAAGQKYTWNSSKLKFGITLL
                     FSRYDSANNTPLDYYYHSVFLSKAQLAELAGKGLLVPMPSATYGERKYLYVSETEVAG
                     HNDNTNNASWALRQLTVM"
     gene            complement(4985..5464)
                     /locus_tag="IBJ56_000313"
     CDS             complement(4985..5464)
                     /locus_tag="IBJ56_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416598.1"
                     /translation="MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVV
                     SVNGKAGRVLLDAEDVHAAKKSHNHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSIN
                     GKTGIVDLFAADLDAAEINHTHAEATTTESGFLAKEDKEKLDAMQIIALETIKEVIE"
     gene            complement(5479..6054)
                     /locus_tag="IBJ56_000314"
     CDS             complement(5479..6054)
                     /locus_tag="IBJ56_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAM3416599.1"
                     /translation="MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYV
                     YVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARVDAFGARYPVLRERLNQ
                     EQLIYNKKSTVQFDVNTIINMEKQDIGLLTSKTISEAQTVCFLNISSLNEDADIVLEK
                     TGETSFSENLTSLVFAKIGTNERYQMEPVGA"
     gene            complement(6069..6368)
                     /locus_tag="IBJ56_000315"
     CDS             complement(6069..6368)
                     /locus_tag="IBJ56_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA-adding enzyme"
                     /protein_id="HAM3416600.1"
                     /translation="MATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDK
                     TKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE"
     gene            complement(6358..7494)
                     /locus_tag="IBJ56_000316"
     CDS             complement(6358..7494)
                     /locus_tag="IBJ56_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416601.1"
                     /translation="MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKT
                     KQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTISKQITAQHICYTVQDHVQYNV
                     KSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGA
                     ILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENAD
                     KLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALT
                     ISYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRI
                     QTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD"
     gene            complement(7504..8322)
                     /locus_tag="IBJ56_000317"
     CDS             complement(7504..8322)
                     /locus_tag="IBJ56_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HAM3416602.1"
                     /translation="MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGT
                     DGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRY
                     EVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDD
                     LFYIFKENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYRKELQKT
                     DVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR"
     gene            complement(8319..10187)
                     /locus_tag="IBJ56_000318"
     CDS             complement(8319..10187)
                     /locus_tag="IBJ56_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416603.1"
                     /translation="MADSKSFTFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDV
                     GNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNL
                     GSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKKHLGGLMSSIGGV
                     GGIMGKLTSPMGLVIIGIVALVAAFAYLMTTNESFRNTVMSVVTQVAQLFGQLVASLM
                     PIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVM
                     SLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIG
                     VIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIGFITNIFTTIVT
                     IIGAAFQMVFTVASKIWNAIMTTISGIIEGIKAVITGISTTVSSVFNGVKRIITGVFD
                     GIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIG
                     KIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSMLY
                     TSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS"
     gene            complement(10174..10578)
                     /locus_tag="IBJ56_000319"
     CDS             complement(10174..10578)
                     /locus_tag="IBJ56_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine racemase"
                     /protein_id="HAM3416604.1"
                     /translation="MDSEMNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEW
                     ENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEA
                     KEGKAWIDRIYGANGLRRPKNKEERGKVNGGF"
     gene            complement(10620..10922)
                     /locus_tag="IBJ56_000320"
     CDS             complement(10620..10922)
                     /locus_tag="IBJ56_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation and condensation protein B"
                     /protein_id="HAM3416605.1"
                     /translation="MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQV
                     IETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR"
     gene            complement(10970..11482)
                     /locus_tag="IBJ56_000321"
     CDS             complement(10970..11482)
                     /locus_tag="IBJ56_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail protein, TP901-1 family"
                     /protein_id="HAM3416606.1"
                     /translation="MAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQG
                     LTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSP
                     VCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQM
                     PGETPVAPAE"
     gene            complement(11495..11884)
                     /locus_tag="IBJ56_000322"
     CDS             complement(11495..11884)
                     /locus_tag="IBJ56_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5072 domain-containing protein"
                     /protein_id="HAM3416607.1"
                     /translation="MKSLSFMRVLEAVRTMLQEKGGLDVSIVMRDQVEMPTTMIEMID
                     QEEEESQTAWKEKYRFAIHHYTNETDLAGVEMIDTLIQTGFTLPEGYKLIAVRHYGKQ
                     NLVKENTLIHAKTSFEVSICRELKVKI"
     gene            complement(12164..12580)
                     /locus_tag="IBJ56_000323"
     CDS             complement(12164..12580)
                     /locus_tag="IBJ56_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416608.1"
                     /translation="MQVLVLPENKDINYIKTVQEVKRFFADLERFRMITGLSKKPHLL
                     RNGFLEEPQFEPVAFSARYNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQ
                     DVAVMMDLPYEIAQFKRIKKRAVLEIATLMGILVRK"
     gene            complement(12592..13020)
                     /locus_tag="IBJ56_000324"
     CDS             complement(12592..13020)
                     /locus_tag="IBJ56_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416609.1"
                     /translation="MDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREK
                     GLLTAEQKLLILTPSEYREYKRTKSDVQISRLIGVSRSSLAEWKRKKGLNRKKPQPVQ
                     QEMIDVLAFHLDKTKDEIGALPASAIECQYEAFVINEAHN"
     gene            13237..13572
                     /locus_tag="IBJ56_000325"
     CDS             13237..13572
                     /locus_tag="IBJ56_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3416610.1"
                     /translation="MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDR
                     KANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIE
                     MKKKLHRGM"
     gene            13578..14030
                     /locus_tag="IBJ56_000326"
     CDS             13578..14030
                     /locus_tag="IBJ56_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HAM3416611.1"
                     /translation="MYEKLVNKYQDEVTIREEKMPYKLPGLYLNGTIFISKDQSSIEK
                     GCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREY
                     FEVAEFLEVTEEFLRHTVTHYAEKYGPMYDYGGYFINFGNSIDVYKKF"
     gene            14249..14944
                     /locus_tag="IBJ56_000327"
     CDS             14249..14944
                     /locus_tag="IBJ56_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3416612.1"
                     /translation="MFHTIDFSDIFSSDYSNKISFKKGEIIHSYRDYEEKTPQIGAIL
                     EGTAVLEGPTNEGRWMINALIGQHSLFGMESLLETKTAPELTEYRVRALENGTVLFID
                     REFLLNYLYANPQFFHLILDEVIVRYLFTSKNYKNINQAPIVKVTRILVEIIELLHLH
                     QTEGAIELPVYVTQTFLADYCRSSRARVTEVLEELRESGLLLSKKPITISSHENLLNQ
                     IDSFQTGNGLLTR"
     gene            complement(14914..15621)
                     /locus_tag="IBJ56_000328"
     CDS             complement(14914..15621)
                     /locus_tag="IBJ56_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAM3416613.1"
                     /translation="MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEA
                     VLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHR
                     ITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVM
                     SYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLES
                     HGVSIFQGYLVNKPFPV"
     gene            complement(15728..16843)
                     /locus_tag="IBJ56_000329"
     CDS             complement(15728..16843)
                     /locus_tag="IBJ56_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3416614.1"
                     /translation="MEYKKALAFIKSNSILEQEEGTEVIFKQAQETVRGNLDPFLLKD
                     LKQHLGGTNDAIKEAPQEIQMPDFSNLEIATAAALQMRATMGSPNIDLSNGVTTEYRV
                     VEGDYGDIPVRIYRHEEATKPVPAFIFYHGGGFVGGTPAVVENFCKGIAEKLPAVVIN
                     VDYHLAPEFPAPAAPKDCYRALEWVVEQSDELGIDASKIGVSGDSAGGTLAAAVSYMD
                     YEAETNYVGFQALLYPALTLVDEDNDKYQWDISKFGASEETLPLVAPGIIGMNSSGEL
                     LRTAYVRDENPASPIYSPLSAVDKSIYPPTLIASAEFDALRAFADIFAKELRASGIQT
                     KAIVYQGMCHAFIDKYGIFPQAEDVADEIVQMMKEIF"
     gene            complement(16878..17711)
                     /locus_tag="IBJ56_000330"
     CDS             complement(16878..17711)
                     /locus_tag="IBJ56_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAM3416615.1"
                     /translation="MLKINTTTFNPQILYIANCYTNEVRVGENHHHDFLEISIICEGN
                     VIYDIEGERVKLGKGDMLIFNPGVNHYDITEPGMTNAQLHIGFRNFALEGYTRNTFPF
                     KKAFLRKKEEESAILSISKQIIEEKDAEKPGYDLILKAFVMQLIIHVLREATPEQLEN
                     NGVKLSTDEQQKQILVNEIIHYMEKHHTEDVSLSTLSQTMYISPAYISKVFKEETGES
                     PINYLIKIRLTRAEELLKNKDVTVKQAANMVGYNDAYYFSKLFKKYYGFPPSENWRKS
                     S"
     gene            17854..19596
                     /locus_tag="IBJ56_000331"
     CDS             17854..19596
                     /locus_tag="IBJ56_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416616.1"
                     /translation="MESMKWIWQYVRKYRLLMIGVFILIFIASGISIIYPLLGGKVID
                     DVVYQNKTNLLIPLLLIMIISTIIRTICRYTYQIMCERIGQNSLFRIREDLYKKLQSL
                     DFDFFNNTRVGDIMARMTGDTDAIRHFVSWVSYNILENVFLFSFAIIIMAAIDWKLTL
                     ALVIVTPLIAILTMKMSSKAQPVFYEIRESFSRLNSMVEENISGNRVVKAFAREDFEM
                     KKFHEHNEDFKKRNLDSADVSRTYLPVLDSLAGMLVVITLIFGGYLVIKGQMTLGDLV
                     AFNGFLWMLNGPMRMSGWLINDVQRFIASSFKIQDMMATDAKIPIHAEKPAPSLQGHV
                     EFKNVSFHFEDDPNTDVLKNISLKASPGQTIAILGETGAGKSTLVNLICRFYDPTSGE
                     ILIDGVDARKWHVRELRNHIATVMQDIFLFSDTIEGNIAFGAPDATMEDVRRMARIAD
                     ADHFIETMPESYDTIVGERGVGLSGGQKQRISLARALLKNPSILILDDTTSAVDMETE
                     VKIQGELKKITENTTTFIIAHRISSVKEADEILILNHGEIIERGTHSSLLAEKGYYFD
                     IYNKQLGTEANVNG"
     gene            19589..21370
                     /locus_tag="IBJ56_000332"
     CDS             19589..21370
                     /locus_tag="IBJ56_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416617.1"
                     /translation="MARNKFDIDEELETAFSAAHLKRILVYVKPYQKSIYITLFVILL
                     ANVATMIGPYLTKIVIDDTIPNKNMTQLFWIAIIFIFSVVVTGLCMRYRIRSITLIGQ
                     DILKDMRTAIFGHLQKLPFSYFDSRPHGKILIRVVNYINMLSDLLSNGLINLISDILS
                     VIVTLGFMLMIDPVLTLYSLALIPVLFVIVMVIKTAQRKAYQVLSNKQSNMNAYIHES
                     IAGIKVTQSFSREEENFEIFTEVSNEYRRSWMKAVKIQFLLWPGVQNIAVMTTCLIYF
                     VGIKGYGVDVSTGTLIAFIGYVGNFWNPVINIGNFYNSLITATTYLERIFETMDVEPD
                     IKDVPNAKKMPPIVGNVDFKDVYFRYEEGVDILKGINFHVDAGESIALVGPTGAGKTT
                     IINLLSRFYNINSGEILVDGENVEEVTLRSLRSQMGVMLQDTFIFSGTIIENIRYGKL
                     DATEEEIIAAAKVVRAHDFISGLKDGYYTEVKERGSTLSAGQRQLISFARALLADPKI
                     LILDEATSSIDTQTEILLQEGLERLLEGRTSFIIAHRLSTIKNSSRIFYIDNGRIQEA
                     GSHEELMAQHGYYYNLYQSQFDMLQAL"
     gene            complement(21395..22297)
                     /locus_tag="IBJ56_000333"
     CDS             complement(21395..22297)
                     /locus_tag="IBJ56_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAM3416618.1"
                     /translation="MYFVYDIGGTFVKFALMENNGTVKMKDKFPTTAKSAEELVAQMV
                     EKWRPYSTEVKGIAVSCPGVVDTEKGVIYQGGSLLFMHEKNLAEMLARECHVPVVLQN
                     DAKSAALAELWLGVAKNVHSAAILTLGSGVGGGIIMDGKLQSGYHLMAGEVSFMETSF
                     DTKKLRGTFFGRTGSAVELIKRIASKKNLPNKKDGEQVFELINQGDEEANAIFDVYIY
                     ELTSQILNIQYLIDPEIIAIGGGISAQPVVVDRLNEAVAEIKDANPYHAAQPKIVTCH
                     FQNDANLYGALYNFFLQMDAQNKR"
     gene            complement(22400..24670)
                     /locus_tag="IBJ56_000334"
                     /pseudo
     CDS             complement(22400..24670)
                     /locus_tag="IBJ56_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463638.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase"
     gene            complement(24961..25332)
                     /locus_tag="IBJ56_000335"
     CDS             complement(24961..25332)
                     /locus_tag="IBJ56_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416619.1"
                     /translation="MTIKITRKTGIGSGITPVKIRIENEEIVKLDNHQSHFFMPKMEK
                     TKVCVTNWFYGSQEAVLENNNDVIVRINRKALILNYSMFPFLFFGLLATSWESTVIAL
                     ILCLASFFYSRKHWFEFVKIK"
     gene            complement(25428..26060)
                     /locus_tag="IBJ56_000336"
     CDS             complement(25428..26060)
                     /locus_tag="IBJ56_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HAM3416620.1"
                     /translation="MTYVNNDFEDLMKNRRSIREYDETVKISQEEMKAILEDAVTAPS
                     SVNMQPWRFVVVESDAGKEKLSSLVRFNTRQNESSSAMILVFGDLENFENGEKIYGES
                     VERGLMPAEVKEQQMAKLSQYFASIPRTEAERVVLIDGGIVAMQLMLVARAHGYDTNP
                     IGGFERTEVAEAFNMDPERYVPVMIVSIGKAKNSGYQSYRLPITDVTTFA"
     gene            complement(26074..26364)
                     /locus_tag="IBJ56_000337"
     CDS             complement(26074..26364)
                     /locus_tag="IBJ56_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HAM3416621.1"
                     /translation="MLHIEAQITVKKEQTEAFLQATKEVIAASRAEAGNHGYELVQST
                     ENETVFYMLEKWADMEAIQQHNDSEHFKKFQKLAADFVAKELEISVLTPLAR"
     gene            26476..26769
                     /locus_tag="IBJ56_000338"
     CDS             26476..26769
                     /locus_tag="IBJ56_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAM3416622.1"
                     /translation="MKKLNELSKSDLLLIFQALSDPIRLDIFLCLLKSKEKRFSGTTY
                     NISKSTMSHHIKLLKEAKLINLRKEGTTHIYSVNEALVEEIGYFFDACKHNHK"
     gene            26884..>27833
                     /locus_tag="IBJ56_000339"
     CDS             26884..>27833
                     /locus_tag="IBJ56_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HAM3416623.1"
                     /translation="MRPTNVYTPEDIYLKDRTGFNNGNLAYQYSIYRALWNDDVEIHA
                     DGLSSNPNLAEKINENYDLYVMPLADAFRDDFRPVLRNYTQLIRKLKIPVIVTGVGLR
                     ANYEPQLDEGFSFDEDVTNFVKAVLEKSAQIGVRGQITADYLKKLGFNAELDFRVIGC
                     PSLYTFGREIKLRDFHLTDQSTIAINASPTSSEIAINFLNNMITTYKDYHFIPQHLDE
                     FHLMYAGGPDISSDINGYPTNIQHKYYQEGRVKYFTSMPSWFDFVKKVDFSIGSRLHG
                     NVIPTIVGTPNISFVQDARMRELASYHALPHVTIDELEKT"
BASE COUNT         8312 a         6047 c         4636 g         8838 t
ORIGIN      
        1 tcttccatcg gtagtggtcg actaaaataa tagccctgga aatagtctac tttcatttcc
       61 cgtaattttt cgacttgctc catgtcttca acgccttctg taactacttt cccgcctaaa
      121 tcatgacaca aattgacaat cgctcgaata ataatttgtt gttttcgatc tgtttttaaa
      181 agcgcgataa aggacatatc tgttttcaca atatcaatcg gtaagctgcg taaatacgca
      241 agcgaactat aacctttccc aaaatcatcc atacttactt tgacaccaag gtcttttatt
      301 tttcgtaagt ttttatccgc tatagctagt tccgttattt cgcctcgttc gataatctct
      361 atttctaagc attccggata ctttaaatgt tctttcacat aatcatgtaa aaaagtcata
      421 tacgtactgc tcgctacata atgtgccgga atattaatcg aaattgaaaa acgtcctcct
      481 agctgattaa tctgttttat cgctgtttca gcaacaaaat cttgcatttc ccgcgttgca
      541 tttaaaagga caatatcatc aaagaaatca attggagcca aaatggttgt tgccgttttt
      601 aatcgaatca aaccttcaaa gccaataatt ttattcgttt tcgcgtctac ttttggttga
      661 taatatagca aataactatt tctcctaatt gcatcccata tttccgtact tgagatatcc
      721 atcttatccc tcctttttct ctagtttacc cttttttcca tcgaaatgaa aatatagcca
      781 aatattatca ctacatttac acaaaatcca tatttcctat tgctagggtg attcctcttt
      841 gctacaatta tagctaggca cctatgagtt agcgcttaca aaattgccac tggcgaaaaa
      901 agggagagtg tgaaagtgaa caaatttttc aagaaaacta cacatgtttt actcgtagca
      961 gggctcacaa tcggacttac agcaccattc accgggacaa cagcacaagc agcagcggat
     1021 accgttccca ttcagatttt gggaataaat gatttccacg gagcgcttga aacagcctct
     1081 aaagatgcat caggctcacc aattggcgga gcagattact tagctaccaa tttggataat
     1141 gccactaact catttttaca ggcaaatcct ggggcgacaa ctgacaatgc tatccgtgtt
     1201 caagcgggcg acatggtcgg cgcaagtcca gcagtatcag gtttacttca agacgagcca
     1261 acgatgaaag ttctccaaaa aatgaatttc gaagtcggca cattaggtaa ccatgagttt
     1321 gatgaaggat taccagaata caaacgaatt ttggacggag tttctacaaa caaattcgga
     1381 ccaatcgtag aagcttatcc acgcgttaaa agtgacatga aaatcgtcgc agctaacgtg
     1441 gtcaacaaag gaacaaacac agtcgcagaa ggctttttac catactatgt aaaagaaatt
     1501 gatggcgtca aagttggctt catcggtatc gttacaacag aaattcctaa tttagttctt
     1561 gcaaatcata ttaaagacta tgatttcctt gatgaagcag aaacaatcgt taaatactct
     1621 gctgaactaa gaggccaagg cgttaacgca atcgttgttc tatctcacgt tccggcactt
     1681 tctactggaa atcctaacac tggaacaaaa caagatgtag ctggggaagc tgctaatatg
     1741 atcacaaaag caaatgaatt agacccaaat aactcggtcg atttagttct tgctggacac
     1801 aatcaccaat acacaaatgg attagtcgga aaaactcgta tcgttcaaag ttacaacaat
     1861 ggtaaagctt tttcagatgt aactggcgaa cttgataaaa ctaccggcga tttcgttaca
     1921 ccacctgacg ctaaaattac atacaacacg agaagcgtca caccaaatgc cgatattaca
     1981 gctgttactg aagatgcgaa aagccgcatt gaaggggtta tcaacgaaac tatcggacta
     2041 gccaataaag acgttatttc tcgtgacacc aatccagaca acaaagcaat tgatgataaa
     2101 gaatcagagc ttggtaacat gattacagat gcgcaacgtt acatggcaaa taaagccggc
     2161 gccgatgtcg actttgctat gactaacaac ggcggaattc gttctgacct tactactcgt
     2221 cttgcaaatg gccaaaacga aatcacatgg ggcgcggcac aagctgttca accatttggt
     2281 aacattcttc aagtagtaga aatgactggt gctgatattt tggaagctct aaaccaacaa
     2341 tatttaagca accaaactta tttcctacaa atttctggat taaaatatac tttcactgat
     2401 acagatgact tagatcatgc gtacaaagtt gcaagcgtta caacagaaga cggaactcct
     2461 ttaaaagccg accaaaaata caaagtcgta atcaatgact tcctatttgg cggtggcgat
     2521 ggattctctg ccttcaaaaa agcaaaccta gtaactgcaa tcgacccaga cactgaaaca
     2581 ttcatcaact acatcaaaga ccaaaaagct gctggaaaag tcattacagc tcaaaaagaa
     2641 ggacgtaaag tctacaaatc ccaagctgaa atcgacaaag aagccgaaga tgcagctatc
     2701 aaagcaatca aagacgcaac aaaaatcaat aaactagccg aaaaagacaa aactctaact
     2761 ggaacaactt tgcctggcgc aactgtctct gttcaaaaag caactgctaa cgcaagaatg
     2821 gcccttgctg ccggacctaa cgcaacagct gacgcaaatg gcaagttttc cgtagatgta
     2881 acatctttaa accttaaaaa aggcgaccaa atcacaacaa ctatcactga cccgaacgga
     2941 tacagcacca ctttccaagc aacggttcaa gctgcggcaa caactcctcc agataatgga
     3001 aacggcggca cggacaatgg taatggaaac ggaaataacg gtggcacaga tggaaatggc
     3061 ggaacaaata acggtaacgg ctccggcaca aacggcggaa ctactactac cgaagatccg
     3121 acaactacga caccaaacac atcaacaaca ggaacttctg ctaacacatc cttaccaaca
     3181 accggtgata cagctggatt tgcaactgta ttcggtattg ttttaacgac tactgcgctt
     3241 tatgttttgc ggaagagaag ttaattgaga aaaaggagca gccaaattgg ccgctccttt
     3301 tttatctttt tcctgtatta acttctgttt ttaaaaccca acttcctgga acaccctttg
     3361 tagtagttaa attaagcgtt ttttctgttt ctttataaac aaaaaccttt gttcctgctt
     3421 ctaaatatcc tttaatattt gtgcctgata tagcatcatc acttgtcaaa tatttacctg
     3481 ccctatattt tgttaccata gccccaaaaa tctcttgtac tgctgctaca attcctaaac
     3541 aataatcagt ttgataagct ttcttctcaa gaattaatgc atcagtgcta tcacaaaaac
     3601 cagcttccag taagatagcg tccattgctg tttctcttaa tacagcaaaa ttagccttct
     3661 tcatcccacg atcattcatt ccgtgtttag taactttagc aataatattt ttatgaatga
     3721 ttttctgtat ttctaccgtt ttagctggaa ccgatgtgta aatataatct tcgtaacctt
     3781 tacctccacc cgcattaaaa tgaagtgaaa taaataaatt tgctttaaaa ctattcgctt
     3841 tttttgcacg ttcacgtaat tctaaaaaag tatcatttgt tcgcgtcatc cctacttcaa
     3901 acccagcttt tactagttct atttgaagct gtttcgcagt tgcaagtacc caattttttt
     3961 caacaagtcc attgccgctt gcccctggat ccttgccacc atgaccggca tcaatccata
     4021 tctttgtcat gcttttcctc ctcgtcccct gacttagaat cgaaaatcaa aattaaattt
     4081 ttcaatactt ccgggacctt cattcccatt cgaacaaaat tttccaagat ggaaatcagc
     4141 tcattcgcca aatagaaaaa gataaccgca tcccgcgttg tattatgcgt tccaagaatc
     4201 aaatctattt gatgcgcaat agccactaaa attaagatag cgattttttt cgcgattcct
     4261 ttgaaaccca ttttgctgct aagttcccca agataccctg aagcgagtag cccagaaata
     4321 tagtcagcta caataaagca caccagcact tttaccaata aatccacttc cccaaacaag
     4381 tatccaaata tcgccccaaa acctaaaatc ccaattttta gtatgacttc catggaaaac
     4441 ctccttttta gttacattac agttagctga cgtaatgccc aagaagcatt attagtatta
     4501 tcattgtgtc cagcaacttc tgtttcagaa acatataaat attttctttc cccataagtt
     4561 gctgagggca taggaactaa caaaccttta cctgctaatt ctgctaattg agctttcgat
     4621 aagaaaacag agtgataata ataatctaaa ggagtattat ttgctgaatc gtaacgactg
     4681 aataataaag tgattccaaa tttcagtttg gaagaattcc atgtatattt ttgaccagca
     4741 gccataatat tggccccttt aaatattact gttccttttc caatcgtatc aacataatcc
     4801 ttcgcactat tcaaagcagt attcgccttt tgttccgcac ccgcagtagt ttctttctcg
     4861 ttccatgtcg ccttctcttc ctctgaaacc gacacaagtc ctttaacagc ctctgcatgt
     4921 gtttctggat agaattgttc tagagttcca tgttcgtttt tctctgacat ttttacaatt
     4981 ttagtcattc tataacctcc ttaatagttt ccagcgcgat tatttgcatc gcgtctagtt
     5041 tttctttgtc ctcttttgcc aaaaaaccac tttctgtagt agttgcttct gcatgcgtgt
     5101 ggtttatctc tgctgcatct aagtccgctg cgaataaatc aacaatccct gttttgccat
     5161 ttatgcttgt cacgccagct tctggtgaaa ctaattgatc aatcttttgt ttatcaaaag
     5221 aactcataaa gccgtccgtc gtgtatgttg cgacttcgtg gttgtggctc tttttggcag
     5281 cgtggacatc ttctgcatct agcaacacgc gcccagcctt accattaaca ctaaccacgc
     5341 ctgtcggaag ctggcctgac acatattccg tcaacccaac aatccccgca acatgcgtct
     5401 ctggataaaa ttgttctttt gaattatctt cttttgtctg cagcattcgc tttatttcag
     5461 tcattgctca ctcctccttt atgcaccaac tggctccatt tggtagcgtt cattcgttcc
     5521 aatttttgca aagactagac ttgttaaatt ttctgagaag cttgtctcgc ctgttttttc
     5581 aagaacaata tccgcgtctt cattaaggct tgatatattt aaaaaacata cggtttgcgc
     5641 ttccgagatt gttttacttg ttagcagccc aatatcttgt ttttccatat ttataatagt
     5701 attcacgtca aattgcaccg tgcttttttt attgtaaatt agctgttctt ggtttaaacg
     5761 ttctcttagt actgggtagc gtgcgccaaa tgcatccact ctggcgtcga ccacttcact
     5821 taactgctct gtcccgctaa tcaattcatt tacccttgca tttaccgcct tatccacagt
     5881 atcaattttg ttatttaaag tagcatctgc tttatttaca tagacataaa tcgcgcttaa
     5941 acctgttgaa ataaaatcgg accaatccat taatttttgc cagttgtcat ttgttttatt
     6001 tctaaattct cgaccttgaa gaagcatttc ccatttccat aaatccaact tcatacgcaa
     6061 cctccttcct attccacttt tgttgccttt agttcaccag catttgtgac agttattttg
     6121 aaattagagc cattttcaga aaccaaaatt gcgtcctgtt ttttattcca attggcaata
     6181 tcgattgcag tcacattatt tttttctgca ttagcttcga ttccatttaa tttcgttttg
     6241 tcgctggcgg gcattaatcc agatgtagta gttgtagccg agtccaaacc ttccacagcc
     6301 gttacatgtg tcttcggata gaaaactgta tcatctacat tttttaacac tctaatttca
     6361 gtcgccatct accacaccta ctacttccgt taaaattcgt gaatcataag cattcattgc
     6421 gatgctcgaa aacgaattaa ttttatttgt atctacgctc gcttttttca cttgattagc
     6481 aatttgcgtt tgaattcgga ccatatctcg tcgcgaatta ctgaagccaa tttcttgaaa
     6541 cttcttactc caaggatgac tcgatttaat tttcgttact tttacttctg tttcaaaccc
     6601 catcggttca tgaatgaaat accaaacatc ccgctctgaa acaggttctt ttcctttgta
     6661 agaaatagta agcgctgttt ctggaacatc tagaatttgt ttctttgcaa aaattaataa
     6721 gtcatcattg ttcgtgattt tgtcatcact tttagcattt gccattcgtt tcccgtaaat
     6781 agcctcattt ggcgaagtat acgtgacaac cgccatgtac ttattatctc cagtcagctt
     6841 atcggcattc tctttttgct tgccgtaaca ttttatctcc gtcttcaaat tatctgtgtt
     6901 cgtatccacc gaaacttctt ccgtattata taaataacga aattgcttct ctgtccttac
     6961 ataccaactt ttttcatcgt aaaaataaag ctttttatta tctgcaaata aaattgctcc
     7021 gaattcttcc aaacataaat tcactagctc taagccattt ttatttccta agtcctctag
     7081 ttcaactaaa ggaaaactcc cttgaatttc ataagaaaat cctagtacat tatcttgtaa
     7141 cgcaaattcc aataccgttt gaatcgaata tttttttcgt ccagatttca cgttatactg
     7201 cacatgatct tgcactgtat aacaaatatg ctgggccgta atctgctttg aaattgttcc
     7261 tccaatagat tttggcgtac attttttaat aacaaattgc tgcccttgat atgttaaaat
     7321 tgcttcattt cctaccaagt caaaaattgc tgcattctgt ttcgttttgt tcacagtaaa
     7381 cgagatagca cgacttgtat ttttttcata atcgtaggaa aaggagccgt aatcaatgtc
     7441 tgttagaatc tcttccactt ctttgtccat actttgaata atcacataat ccatatctat
     7501 cacctaccga taaatgaacg gaaaattaaa agcaatcgtt acatccgtta cacctttgat
     7561 ttcaaaatcg ttccagcctt tttcaagggt gataatccca tgattggtat cttttccaac
     7621 acggcggtta ttaacaagtg gataaatatt gttcaacagt aaaacatctg ttttttgtag
     7681 ctctttccga tactcgaagg attctcccgt tgtaagatta tgaatcgttg gtgtcccatt
     7741 cgccgtcata gcaatatcta attcatgtcg catcagtgga ttaacacggt cgctccccgc
     7801 attatagacc cgaaatgtat tttctttaaa aatataaaat aaatcatcac ggttcgataa
     7861 attcattccc atttgccata aatccacttc aaaagtcata gggtcaaggc tcgtgccacg
     7921 tgactccgca tagcctttaa atacatcaaa ttctatagtg agtaaaccaa cacgatccga
     7981 ttctcgacta aaatcaactg gtttaggatg cacctcatac cgaattcctg gcatttgatc
     8041 gctccaaata taataactat cgcgctggaa taaaaattca taaatttctc tgactgccaa
     8101 atgataatct ggaatatcaa gtgcttgcaa attacatttt gctgaaaaga taaacggttt
     8161 aaattgggtc attcccggga taaccccatc agtcccagcg atttcagcag tttccatgct
     8221 taactgggga ctttgtctgg aaacttcttg tacagaaaga cctggaaatg tctcactaag
     8281 cgaatgcact tttccattta attctaaaaa caagtcgctc atgaataagc tgcacctccc
     8341 attgtgtaat tgtactgatc aaatgagtta gcttggttac ggctaactac ctcggctacc
     8401 actttgtcat ccattttgat tacaggattt ttttgtagta agcgctcgag aagattttca
     8461 actctagcca aatcagcacc ttgactcgtg taaagcattg atttatttcc gcgcgcactt
     8521 tcccttgcgt atttcatcgt tgcatcgtgc ggaattactt gcgaacccga cggtaaaacc
     8581 accatttcgc ctcggccgcc ttcattcatt cgagcaaagc caccttggaa atttgttgta
     8641 ccggaaatta attgtggtat tttgccgatt tcaacgcctg gaatcttatt aattaaacca
     8701 atggctccat taatccctcg aattacgacg tttacaaaac ctttgacatt atctaccacg
     8761 gtttgaattg cacttgaaac accatcgaaa atatttccta caaaatcagt taaaccaccc
     8821 caagcacttt tgattccgtc aaaaacacct gtaataatgc gcttcactcc gttaaacact
     8881 gatgaaaccg tagtagaaat acctgtgatg actgctttga ttccttcaat aattccggaa
     8941 atcgtcgtca taatggcatt ccagattttg gatgcaacag taaataccat ttggaaagct
     9001 gcaccaataa tcgtcacgat agtcgtaaag atattagtaa taaagccaat aattggttgc
     9061 acaatcccga taaccgccgt aataacactc gcaataaagc taataatttt cccaataaca
     9121 ctagcaatcg tcgtcgcaat aataacgacg taactaataa tcgttgtgat aatcgaaaca
     9181 ataacgccaa taatcgtcat aacaatcggc ataattttac ttatataaga aataatcgtt
     9241 acaacaattt gtacaaccac cgtcgcaatt tgcatgatta tcggaattaa aaattgaata
     9301 acgctcataa tgccttgaat cactgtcatg atgctcggta atagtgccga aacaagtgac
     9361 ataacaactt gaacaatctg cataataaca ggcataagca tggaaatcag catattaata
     9421 aacggcatta attgggctaa caattgcgca aaaaagctaa taaattgcat aaccatcggc
     9481 attaacgcgg caccaatttg cataaccgca gtaacaattt gcatgataat cggcattaaa
     9541 ctggcgacaa gttgaccgaa cagttgcgca acctgtgtta caactgacat caccgtattt
     9601 cggaatgatt cattcgtcgt catcaaatac gcaaatgcag ctactaacgc tacaatcccg
     9661 ataattacta accccattgg agaggtcagt ttacccataa ttccaccaac gccaccaata
     9721 gatgacatca aaccgcctag atgcttcttc aattccataa atccactagc tagatttgta
     9781 attccttgaa cgccgccaga tactccacca agcattgtac tcatgccacc aatcccggtt
     9841 gccaagcttg aaaataacgt accattttgc acacttgaac ctagattttt aaacgcatcc
     9901 gtgattccac caacagaacc aaccgcagta ccgaatccgg atgtaatcgc ctcactacta
     9961 gaacccagtt gtccaaacgc cgaactaatc gtgccaagcc cagactgcag cccacctaaa
    10021 gattcggaaa ttttcgaacc tggatcagca tttccaacat cttcaatagt cattttgagc
    10081 tctgaaaacc gccgctctac aaccatcgcc atctcatcta gcctgccaac ttgcgctgtt
    10141 aaaacgctct cgttcagttc aaatgtaaaa cttttagaat ccgccattca ctttccccct
    10201 ttcttcttta ttcttaggtc ttcgtaaccc atttgcacca taaatccgat caatccacgc
    10261 tttaccttcc ttcgcttcat tatcggaaat tgcttgaagt gcatttactg tataattaac
    10321 atcggctttc ttctgacgtt ttttatgcaa gtcgataaaa cgtgaatttc gttttcgatt
    10381 gagattttgt tccgcattta aaactgcatt tcgaagcata gtagattcaa aaatcacctt
    10441 gttttcccat tctttcatga tgaaattttt ctccacttca gtaagttctt caaaatcatg
    10501 cttggacatc tgaaaattaa ctacaaaaaa agcgaattgt ttttccaaat caaaatcatg
    10561 gttcatttca ctatccactt cttcgtcctc agcaccaaaa tactcaaatt caatctgttt
    10621 taacggaaca aaaaacccat atcctcttgc aatttctcaa taacagctac attaagcgaa
    10681 attaagcctt gttcttctac taatttgtcg aaaatctcca aagcttcttt ttgttttaca
    10741 ggtactaagc ctttttcttc cacaagtcct gaaacaaata gcgtttcaat cacttggtag
    10801 ctcaaaatcc ctttattcgc agtcaaagct gcaactaaac taatccctga tgttaattcc
    10861 accgttttaa ctttttgttt attaaatcgt aaaatataag ttgtatcatt cacttcaaac
    10921 atttattttc ctcctaaggg aaagccactt atttcagtgg ctctctattt tattctgctg
    10981 gtgctacagg tgtttcgccg ggcatttgat ctccgccctc agtaatcgtt aaatcaacaa
    11041 gcgcacccat tccgtctagt tttacagagt aagtcatcgc ttcatcaaaa ggtgcttcaa
    11101 aactatagtc agctacaatt gccaaaccac cgaaaagacc ttttttagat gcttgattaa
    11161 tgattttcac gcaaaccggg ctatcacttt cgaaatattt cgccaattct ttgtgagact
    11221 ctgcatcagc gacatataat ccgtcatttt caattgacca ttctttcata ccgccaattt
    11281 tggatttcca tccgccaact gtatctttag atgtaatttc aatgctatct ttagaacggt
    11341 ttacagttag accttgttgc cccgcaaccg ctaatagctt atcccccgct gcgttaaaaa
    11401 ctgctaaaat tacatctttc cccgcgaccg ctttagcagc tcccggtgta taatcacaat
    11461 ataaattctc ttcaaatgcc attaatattt ccccctaaat ttttactttt aattcacgac
    11521 aaatacttac ttcaaaactg gtttttgcgt gaattaacgt attttctttg actaaatttt
    11581 gttttccgta atgtcgaaca gcgattaatt tgtatccttc aggcaaagtg aaccctgttt
    11641 ggataagcgt atctatcatt tcgactcccg ctaagtccgt ttcatttgta taatgatgga
    11701 ttgcaaaacg gtatttttct ttccaggcag tttggctttc ttcttcctct tgatcaatca
    11761 tctcgatcat cgttgtaggc atttccactt ggtcacgcat tacaatagaa acatctagtc
    11821 cgcctttttc ctggagcatt gttctcactg cttccaaaac tctcatgaag cttaaactct
    11881 tcaccaagcg ttcactcctt taaaaacaga aagtaaaatt cggtcgagac cacatttgat
    11941 aatttattcc tccgaacatt actttccaaa atagaatatt tgtttatgtc aacggatgaa
    12001 aaatccaatc ataaaaacaa atttcttgta caacctcttg tattatcaga aaatcggtgc
    12061 accttcattc tgatgcagct tttattgtca tccgcttact ggacaattag cttacttcta
    12121 tattaatcgt aaaatgacgt ttcaaaatat cacgaaagta tcatcatttc cttactaaaa
    12181 ttcccattag cgttgcgatt tctaatactg ctcgtttttt tatccgttta aactgggcaa
    12241 tttcgtacgg taaatccatc attaccgcca catcttgttt tcgttccacg taacattcca
    12301 tcaaaatagt gcgatataaa tcatccatct gatttaacat ttcagtatat ttctctacca
    12361 accatcgcgc ttccaaaatg acctctttat tatatctagc agaaaatgct accggctcaa
    12421 actgcggctc ttccagaaaa ccatttctaa gtaagtgtgg cttttttgat aaccccgtaa
    12481 tcatccgaaa ccgctcaaga tccgcaaaaa atcgctttac ttcttggacc gtttttatat
    12541 aattgatatc cttattttct ggtaacacta aaacctgcat gttatcactc cttaattgtg
    12601 cgcttcatta atcacaaaag cctcatactg acattcaatc gccgaagcag gtaaagcgcc
    12661 aatttcgtct tttgttttat ctaaatgaaa agctaataca tcaatcattt cctgctgaac
    12721 cggttgcggc ttttttctat ttaaaccttt ttttcgcttc cattccgcaa gagacgatct
    12781 cgatactcca attaacctac taatttgcac atctgattta gttcgtttgt attctcggta
    12841 ctcacttggt gttaaaataa gcaacttttg ctccgccgtt aacagtcctt tttctctgtc
    12901 cccaagcgct tcaaaaaact ccaactcttc tattaaacgc tttcgaataa atcgattttc
    12961 ttcttgttct agttgaaaaa ttagttggat ttgcttttct tttaaaagtt ttctatccat
    13021 ccattcccac ttccatctca taaattaata tagtaacatt gtcaccaatt cggtgctatt
    13081 ggcgcaaaat cagccgtatt tattttctag ctctacaaat attatagcac cattttggtt
    13141 actggtaaac tttatccgac aaatatgttc gaaaaagttc cgttttggtg ctaaaagtgc
    13201 tatactgaag ccataaacat gtggagggca attattatgg agttaaataa atttgtagga
    13261 aataaaataa aacaatatcg cgaggaacga ggcttaaatc aagaagcatt agcagaaaag
    13321 cttcatacaa ctcgccaaac tattagccgt tatgaaaatg gtgatcgaaa agcaaatcaa
    13381 gacgttttat ttgaacttgc aaaaattttc aacaaacgat tagatgactt ttttcctgaa
    13441 agaaatttac cacctgttga tgaacgcttg gtaacaattg cagcccatat tgatgatgac
    13501 gtaaccgagg aagaaatgcg ggatatttta gcttatatag agatgaagaa aaaactccat
    13561 cgcgggatgt gattttattg tacgaaaaat tggtaaataa ataccaagat gaggtaacaa
    13621 tcagagaaga aaaaatgcct tacaaattgc caggtcttta tttaaatggg acgattttta
    13681 ttagtaagga tcaatcttcc attgaaaaag gctgtgtttt agtagaagaa ttgatgcatt
    13741 acaaatacac tgtaggtaac atcactaaac aggaaacaat tatggataaa aaacaagaaa
    13801 tttttgctcg tcgtaaaggt tatgaggaac taataccgct tgatgacatc attgcttgtt
    13861 tttatctagg cttacgagaa tattttgaag tagcggagtt tttagaggta acagaagaat
    13921 ttttgcgcca tacagttact cattacgcag aaaaatatgg tccgatgtat gattatggtg
    13981 gatatttcat taattttggc aattccattg atgtttacaa gaagttttga aagactctcc
    14041 tatctatgga gggtcttttt ttagttgaat ttctctccag ggaagaaaaa gtaagttttt
    14101 attgataaaa ccactaaatt tgttgctaaa gagtgacttt ttcatgtcta aattgtgaac
    14161 acgattttta ttcggtatct ttttaacaca aatagcagta aagtaatatg gtaaatacca
    14221 attttacctt agtataggag ttttgataat gtttcacacg atagattttt cagatatttt
    14281 ttctagtgat tattcaaata agatttcttt taaaaaaggc gaaattattc attcatatag
    14341 agattacgaa gaaaagacgc cgcaaatagg tgctatttta gagggaacgg ctgttttaga
    14401 aggtcctaca aatgaaggtc gctggatgat aaatgcgttg attggtcaac actcgctttt
    14461 tggaatggaa agtttactcg aaactaaaac agcacctgaa cttactgaat atcgtgttcg
    14521 cgcattagaa aatggtaccg ttctatttat tgaccgcgag tttcttctca attatttata
    14581 tgcaaaccca caatttttcc atcttatact tgatgaagtt attgtcagat atttatttac
    14641 atcaaaaaat tacaagaata ttaatcaagc acccatagtc aaagtaacgc gtattttggt
    14701 ggaaattatt gagttacttc atttgcatca aacagagggg gcaattgagc ttccagtcta
    14761 tgtcacgcaa actttcttag ctgattattg tcgttcgagt cgagctagag taactgaagt
    14821 gttagaagag ctacgggaaa gcggactact gctttccaaa aagcccatca ccattagctc
    14881 gcacgagaat ctactcaatc aaatagatag ttttcaaacc ggaaacggct tattaacgag
    14941 ataaccttga aaaatcgaga cgccatgact ttctagtaga gtcatggttt ctttcgtttc
    15001 aattccctca acaacaaaat cgagcttatt tttctgagca aaatttgccc aagctttaat
    15061 aaatagtagc aaatcttcta atggtatatt tttgaaatga atgagggaga atttaatctc
    15121 tattatgtaa ggtaggtagc tcatcactcg ctctaggctg ttcaatccgc aactaacatc
    15181 atctatggcg atatggtagc cgagaccgtg aatcacttta attttattta gaataaatgc
    15241 gtttttatcg ttcgcattaa ggtggcgttt atgcccgggt acatcgaaaa tatcttcggt
    15301 catttctaca gttatacgat gactctcgct ttttaatttg tctagccagt ggagtgtttc
    15361 tatgtaaaaa agctgttgtg gcgcaatatt tatggcaaat cgatcatttg gatatttctt
    15421 taaaacgtct aagaacgcct cgctaaacca ctcggaaaaa gctaaataca gttcttcgtc
    15481 cgcgagtaca gcttctaatt ctgatagagg aaatctagga actgcactat catcacgtaa
    15541 aagtatttca tattcgacaa tatttccctg aagaacatct aattttggtt gaataaaaag
    15601 ctgaaatttc atgagtccca tcatcctttc tcatttctct tctctattct aatacatttt
    15661 tagtactaat cgcaaaattt agtccaaaaa caaacaggca ttccgaaaaa tgcctgcaaa
    15721 ttattcttta aaatatttct ttcatcattt gaacaatttc atctgccacg tcttccgctt
    15781 gagggaaaat cccgtattta tcaatgaaag catgacacat tccttggtaa acgattgctt
    15841 ttgtttgtat accacttgcg cgcagttctt tagcaaaaat atctgcaaaa gctcgtaacg
    15901 catcaaactc cgcactggct ataagtgtag gcggataaat acttttatct acagccgata
    15961 gtggagaata aattggcgat gcgggatttt cgtctctaac ataggctgtc cgcagtaatt
    16021 cgccagagct gttcattcca atgatacctg gcgcaacgag cggaagtgtc tcttctgatg
    16081 ccccaaactt ggaaatatcc cactggtact tatcattatc ttcatctact aacgttagcg
    16141 ctgggtaaag taaagcttga aatcctacat aattcgtctc tgcttcataa tccatatagc
    16201 tcaccgctgc tgctaaagtt ccacccgcgc tatctccaga aacacctatt ttcgaagcgt
    16261 cgataccgag ttcgtcgctt tgttccacta cccattcaag cgccctgtaa caatcttttg
    16321 gagctgctgg tgccgggaat tcgggagcta aatgatagtc cacattaata acaactgccg
    16381 gtaacttttc cgcaatacct ttacaaaagt tctccacaac agccggcgtt ccaccaacaa
    16441 agccaccacc atgataaaaa atgaatgcgg gaactggttt ggtcgcttct tcgtgacgat
    16501 aaattcgtac cggaatatcg ccatagtccc cttcaacaac ccgatattcc gtagttacgc
    16561 cgtttgataa atcaatattc ggacttccca tcgttgctcg catttgtagt gcagctgccg
    16621 ttgctatttc caaattagaa aaatctggca tttggatttc ttgcggcgct tcttttatcg
    16681 catcattcgt accgccaaga tgttgtttca ggtcttttaa taaaaaagga tccaaattcc
    16741 ctcgaactgt ttcttgtgcc tgtttaaaaa taacttctgt tccttcttct tgttctagaa
    16801 tgctatttga ttttataaac gctaaagctt ttttatattc catccagtct tccttctctc
    16861 tgtcttattt tggaattcta actcgatttg cgccagtttt ctgatggtgg aaacccgtaa
    16921 tatttcttga aaagcttgct aaaataataa gcatcattat atccgaccat atttgcggcc
    16981 tgttttacgg taacgtcttt attcttgagt aattcttctg cacgagtaag acgaattttg
    17041 attaagtagt taattggtga ttccccggtt tcttctttaa atactttgga gatataggcg
    17101 gggctaatgt acatcgtttg cgaaagcgtt gagagcgaga cgtcttctgt atggtgtttt
    17161 tccatataat gaataatttc gtttacaagt atctgttttt gctgctcgtc ggtagataat
    17221 ttgacgccgt tattttcaag ttgttctggg gtggcttcgc gtaaaacatg gataattaat
    17281 tgcatgacga aagcctttaa aatcaagtca tatcctggtt tttctgcatc tttttcttct
    17341 ataatttgtt tagaaataga taaaatggca gattcttctt ctttttttcg taaaaaggcc
    17401 tttttaaacg ggaacgtatt tcgcgtgtat ccttccagtg caaagttccg aaaacctata
    17461 tggagttgcg cattcgtcat acctggttcg gttatatcgt aatgattcac accaggatta
    17521 aaaatcagca tatcgccttt tcctagcttg actcgctcgc cttcaatatc ataaataacg
    17581 tttccctcac aaataatcga gatctccaaa aaatcatgat ggtgattttc acctacgcgc
    17641 acctcattcg tataacaatt cgcgatatac aaaatttgcg gattaaatgt ggtcgtattt
    17701 attttcagca tcacttcacc tcctcgttat aacgcttaca tttatctttt aattatataa
    17761 cattgtccat gcttacagcg aatataaacc attctttttc gaaattagga gtgtaaacta
    17821 aatggatata tgaatattaa aggatgtgaa aaaatggaga gtatgaaatg gatttggcaa
    17881 tatgtccgaa aatatcgtct acttatgatt ggtgtattta ttttaatttt tatcgcttct
    17941 ggtattagta ttatttatcc gttacttggc gggaaagtga ttgacgatgt tgtctatcaa
    18001 aataaaacga atttgcttat cccgctactt ttaatcatga ttatttcgac aattattcga
    18061 actatttgcc gttataccta tcagattatg tgcgaacgaa ttgggcaaaa ttcccttttc
    18121 cgaattcgag aagatttata taaaaagttg caatcactcg attttgattt tttcaataat
    18181 acgcgcgttg gggatattat ggcgcggatg actggtgata cggatgcgat tcgtcatttt
    18241 gtttcgtggg tatcttacaa cattttggaa aatgtatttt tatttagttt tgcaattatc
    18301 ataatggccg cgattgactg gaaattaacg cttgcgcttg ttatcgtaac gccgcttatt
    18361 gctattttaa cgatgaaaat gtcgagtaaa gcccaaccag ttttttatga aattcgggag
    18421 agcttttcac ggctcaattc gatggtggaa gagaatatta gcgggaatcg cgtcgtaaaa
    18481 gcctttgcgc gagaagattt tgaaatgaag aaattccatg aacacaatga ggatttcaaa
    18541 aaacgtaatc tagattctgc cgatgtttcc agaacctatt tgccagtgct tgattcgctc
    18601 gcgggcatgc tcgttgtcat cacgcttatt ttcggtggct atttagtaat taaaggccaa
    18661 atgacgctgg gagatttagt tgccttcaat ggattcctat ggatgctaaa cggcccgatg
    18721 cgcatgagtg gctggctgat taacgacgtt caacgcttta tcgcttcttc gtttaaaatt
    18781 caagacatga tggcaactga cgctaaaatc cccatccacg ctgaaaaacc tgcgccatca
    18841 cttcaaggtc atgtcgagtt taaaaatgtc agttttcatt tcgaggacga cccaaacacg
    18901 gacgtactca aaaatatttc actaaaagct tctccaggcc aaacgattgc tattctgggt
    18961 gaaactggcg ctggaaaatc aacactcgtc aacttaattt gccgatttta cgatccgact
    19021 tccggtgaaa ttttaattga tggtgtcgat gcacgaaaat ggcatgtgcg ggaacttaga
    19081 aaccatatcg ccacggtgat gcaagatatt ttcctatttt ctgatacgat tgaaggaaat
    19141 attgcatttg gcgctccgga tgcaacaatg gaagatgtcc ggcgtatggc gcgaattgca
    19201 gacgcggacc acttcatcga aaccatgcct gaaagttatg acacgattgt tggtgaacgc
    19261 ggtgtcggac tttctggcgg acaaaagcag cggatatctt tagctcgtgc tcttttaaaa
    19321 aatccatcca ttttgatttt ggatgatacc acttccgctg tcgatatgga aaccgaagtg
    19381 aaaatccaag gtgaattaaa gaaaatcacg gaaaatacga ccacatttat cattgcgcac
    19441 cggatttctt ctgtaaaaga agccgatgaa attttaattt taaatcatgg cgaaatcatc
    19501 gaacgcggca cacactctag tttgctagca gaaaaaggtt attattttga tatttacaat
    19561 aaacaacttg gaacggaggc gaatgtgaat ggctagaaat aaatttgata ttgacgaaga
    19621 actggaaaca gcattcagcg ccgcacattt aaaacgtatt ctcgtttacg taaaacccta
    19681 tcaaaaatcc atttatatta cgctctttgt catcttatta gcaaatgtag caacaatgat
    19741 tggcccgtat ttaaccaaaa tagtcataga tgatacgatt ccaaacaaaa acatgacaca
    19801 actattctgg attgcgatta ttttcatatt ttctgtcgtt gtaaccggac tttgtatgcg
    19861 ataccgcatt aggtcgatta cgcttattgg gcaagacatt ttaaaagata tgcggacagc
    19921 gattttcggt catttgcaaa agctgccttt ctcttatttt gacagtcgcc cgcatggtaa
    19981 aattttgatt cgtgttgtta attacatcaa tatgctcagt gatttattgt ccaatgggct
    20041 gataaatctg atttccgata ttttaagtgt cattgtaacg cttggtttta tgttgatgat
    20101 tgatccagtg ttaacgttgt atagtttagc gcttatcccg gttcttttcg tgattgttat
    20161 ggtcattaaa accgcgcaac gaaaagctta tcaagttcta agcaataaac aatccaacat
    20221 gaacgcctat atccatgaga gcatcgctgg gataaaagta acgcaaagct tttcgcgaga
    20281 agaagagaat tttgagattt tcaccgaggt aagtaatgag taccgccgtt cttggatgaa
    20341 agcggtgaaa attcaattct tgctttggcc tggggttcaa aatatcgccg taatgacgac
    20401 ttgtttaatt tacttcgttg gaatcaaagg ttacggtgtg gacgtttcta ccgggacact
    20461 gattgctttc atcggttatg ttgggaattt ttggaatcct gttattaata ttggaaactt
    20521 ctataattcg cttattaccg caacgactta tttggagcga attttcgaaa cgatggacgt
    20581 tgagcccgat attaaagatg tcccaaatgc gaaaaaaatg ccaccaatcg ttggaaatgt
    20641 tgactttaaa gatgtttatt tccgttatga ggaaggtgtg gacattttaa aaggaattaa
    20701 ttttcatgtg gatgcgggtg aatcaattgc gctcgttggt ccgactggcg ctggaaaaac
    20761 gaccatcata aacttgctca gccgttttta taatataaat tctggagaaa ttttagttga
    20821 tggggaaaat gtcgaagaag tcacgcttag atcactcagg tcccaaatgg gcgtgatgct
    20881 ccaagatacc tttatttttt caggaacgat tattgaaaat attcgctacg ggaagctaga
    20941 tgcaaccgaa gaagaaatta tcgcggctgc caaagtcgtt cgtgctcatg atttcatttc
    21001 cggattaaaa gatggctact ataccgaagt aaaagaacga ggtagcactc tttcggccgg
    21061 tcagcgacaa ctgatttcct ttgcccgtgc tcttttagcc gatccgaaaa tcctcatcct
    21121 tgatgaagca acttcaagta ttgatacaca aacagaaatc ctactccaag aagggcttga
    21181 gcgactgctg gaaggccgaa catccttcat tatcgcgcac agactttcga caatcaaaaa
    21241 cagttcgcgc atcttctaca ttgataatgg tcgcattcaa gaagctggca gtcacgaaga
    21301 actgatggca cagcacggct actactataa tttatatcaa tcacagtttg atatgttgca
    21361 agctttatag aaaaaaggta actagagatt ctagttacct tttattttgc gcatccattt
    21421 gtaaaaagaa attatacaat gctccgtaca aattcgcatc attttggaaa tgacaagtga
    21481 cgattttcgg ttgtgcggca tgataaggat tagcatcttt tatttctgcg acagcttcgt
    21541 ttagtctatc aacaacaact ggttgagcgc taatgccacc accaattgca ataatttccg
    21601 gatcaatcaa atactggata tttaaaattt gagatgttaa ttcataaata tacacatcaa
    21661 aaatagcatt cgcttcttca tcgccttggt taattaattc gaaaacctgc tcaccatctt
    21721 ttttattggg taaattcttc tttgatgcaa tgcgcttaat taactccacc gctgatccag
    21781 ttcttccaaa gaatgtacct cgcaatttct tcgtatcaaa agaagtctcc ataaaactaa
    21841 cttctcccgc catcaaatga tagccagatt gtaatttacc atccataata attccgccac
    21901 caacgccact tccaagcgtt aaaatcgccg cgctatgtac attttttgcc acacctaacc
    21961 aaagttccgc taaagccgca ctcttcgcat cattttgcaa gacaacggga acatgacatt
    22021 cacgcgctag catttcagcc aaatttttct catgcataaa taatagcgag ccaccttggt
    22081 aaatcacgcc tttttccgta tctaccactc ccggacaact cacagctatg cccttcactt
    22141 ctgtactata ggggcgccac ttttcgacca tttgagctac aagttcttct gcacttttgg
    22201 cagttgtagg gaatttatct ttcattttca ccgtaccgtt attttccatc aacgcaaatt
    22261 taacaaaagt tccaccaata tcgtatacaa aatacatcct tctgcaccct ctcttgtcgc
    22321 ttttattcat tgtaatacgt ttggtcactt tttcaaataa aaacagagat tctccgaaaa
    22381 gaatctctgt ttttgtctat taatttatta acaaccaagg accccactgt tcagctcctg
    22441 gctcatttcc ctgagtccac cactgtgctt catatgtttt ccctttgtaa gaaaccctat
    22501 ctcccttatt gtacgttttg gcagcgtccc atgctggagt tgctggtggt gttgccgcat
    22561 caagcgttgt tacagttagg accgagcttg ctgccgagaa attccccgcc gcatcatatg
    22621 cctttactgt ataagaatac gctgtttttg cagttaagcc actatctgta aaagtagttc
    22681 ctgaaacaga gccaacttcg gtcccatttc ggtacacttt atatccagcc actgctttat
    22741 tgtccgttga agctgtccac gttagagtag cagatttatc ggttacatta gaagatgcaa
    22801 gtgcttttgg tactgttgga gcttctgtat cgcttggatc aggtacaaca gttcccccgc
    22861 caaaaatcgt ttgtttacca aattcgacac tcgattttac catccgttgt gttaaatcaa
    22921 ttttagaaat gttagctaca tccacactag atgcactcga ttttaaacgg aacgtataag
    22981 atgcgccttg cggaatttgt tgcgcgtcgt atacagaagc taaatcaact actgtattgc
    23041 cacctgaagt agtaactgta cccgctttat aatcgccagc agttaacgtt tcgcccgctt
    23101 ttactggaat ataaaactta ggtaatttca ctgtttcaaa cgatagctca gttgatttca
    23161 aaacttcatt ggtttcgtcc gctttttcat tgtttgtaat tgtaatttcg tacccgaccc
    23221 cattttcgct ataaggtttc actgtcgcta ccacatttaa attcgcataa gtaatcgcgt
    23281 tttgcgggat agcgtttgtg ccgaataatc ctgatttaat cgcctttgtg agttcatcgc
    23341 gcttagtcga agtcgttgtt ttatcctgcg actgcatcca agaaatcatc ccaccaagat
    23401 tattatcttt tacatattgt gccttatagc caatcgagcg cgtattgtca tatgtgtaaa
    23461 actccccagt ttccttacta taaagatacg gcgccttggc agtatcatcc caatattctt
    23521 tcaatgttgg cgttttagct tttagcgcat caatacttct atacgcccaa actccgccag
    23581 cacggccccc atcgcctgtt ttaattgggt tttcgttgtt tgccccgtaa gtaagcgagc
    23641 catccgcatc tttattcgtt ttttcagcag cttggaaaag ccctggcaat gccgtatccg
    23701 ttccagcagc tactttattc cagcctcaag tgtaaaatgc tgccccaaca acaattttat
    23761 tcgaaactgc tcccttttct tttaagtatt taacggtttg gtcgacagaa aaaccactat
    23821 cataattcgg atctttcgga ttgccgtaaa gcgctgtatg atgcgcacta ttcggtgtcc
    23881 aagcaccatt taagtcatac gtcatcacat tcgcaaaatc gactacttta aataaattcg
    23941 ctacatcaat cccattttct aaagtagatt ttgcagctgg taaagcaacc gataattcgt
    24001 atttcttgtt aatatccacg ccttgtttat ccaaagccgt tcttaaatct tgtaaaagtg
    24061 taataaagtt ttgcttatcc gcaggttttg catttggtgt gccttcatcg tttttattat
    24121 caacaaggtc agcgtcccgt accgaagcag gatattccca gtccaaatca acaaaatcca
    24181 tattggtata tttcacaaac ttcatcacgt ttttcacaaa gttagcccgt tttgttggat
    24241 ccgctgcaac tgtcgagaaa tctcccgact tagaccagcc tccaactgaa agccctattt
    24301 tcaaattcgg attttgagcg cgcaaatctt gaatcgcatt caaaacgcct gcatttgctc
    24361 cgccccattg aactccctct tgtccaacag gcgccccaac agcagcatct ttatcagtaa
    24421 aaactaaatc cccattacta ttaaaatcca gaaaagcaaa attcaaatgt gttaattgat
    24481 cagctggaat atctttcgga taaaagttcc cttctcctcc ccaaatcgac caatcaccgt
    24541 aatacataac atttcgatac tgtggtacat tttcagccgc tttcgcccgt tttggctctg
    24601 caccaattga tacaaccact aacgataaaa ctaacaacac aacagaagta atactaaaaa
    24661 gctttttcat cttcttattc atctcttcac cccgattttt gatttataaa cctcatttcg
    24721 gtagttctaa gtttgtctct ctgtacccct ttttgtgtgg ttgcccgaat gttcttctct
    24781 ctaatttcct ccctccaatt aaagattcat tccgagcatc tgtatatcat gcaattatca
    24841 tgccaaaaga aagcgctgtc attctgcggt ttaagacccc ttcctaagat acacagatgg
    24901 aataaaaact tacacagata aaaaaagcat gagaacatat cccacgctat ccatgaatta
    24961 ctatttaatt ttcacaaatt caaaccaatg ctttcgcgaa taaaaaaatg atgccaaaca
    25021 aagtattaac gcaatgactg tagactccca actagtggcc aaaagtccga aaaaaagaaa
    25081 tggaaacatt gaataattta atattagtgc tttacggtta atccgcacaa taacatcatt
    25141 attattttcc aaaaccgctt cctgactccc ataaaaccaa ttagtcacgc aaacctttgt
    25201 tttctccatc ttaggcataa aaaaatgaga ctgatgattg tcgagtttta caatttcttc
    25261 attttcgatt ctaattttca ccggagtaat accgctgcca attccagttt tacgagttat
    25321 tttgatagtc atagttgctt ctcctccttg gctgtatgtt attttaatta tatcaagaaa
    25381 ggaacaaaaa aagaacaagg aaatatcagc tatttccttg ccctctttta agcaaaagtc
    25441 gtaacatccg taattggtaa tcgataagac tggtagccag aatttttagc tttaccgata
    25501 gaaacaatca taaccggtac ataacgctct ggatccatat tgaaggcctc agcaacttcc
    25561 gtacgttcaa aaccaccaat tggatttgta tcataaccat gcgcccgagc aactaacatt
    25621 aattgcatcg ctacaattcc gccgtcaata aggactacac gttctgcttc tgtgcgcgga
    25681 atggatgcaa agtactggct taatttagcc atttgttgtt ctttcacttc tgccggcatc
    25741 aagccgcgtt caactgattc tccgtaaatt ttttcaccgt tttcaaaatt ctctaagtcg
    25801 ccaaaaacta aaatcatcgc ggaagaagat tcattttgac gtgtattaaa gcgaactaac
    25861 gagcttaatt tttctttacc cgcatcactt tccacgacca caaaacgcca tggttgcatg
    25921 tttacagagg aaggagccgt taccgcgtcc tctagaatag ctttcatttc ttcttggcta
    25981 attttcaccg tttcatcgta ttctcgaatc gagcggcggt ttttcattaa gtcttcaaaa
    26041 tcattattta cataagtcat attatggtcc tccttatcgc gcaagtggcg ttaatactga
    26101 aatttcaagt tctttagcaa caaaatcagc agccaatttc tggaattttt tgaaatgctc
    26161 gctgtcgttg tgttgttgaa tggcttccat atccgcccat ttttctaaca tataaaaaac
    26221 tgtttcgttt tccgttgatt gcactaattc ataaccatga ttcccagctt ctgctcttga
    26281 tgcagcaata acttccttag tcgcctgcaa aaaagcttcg gtttgttctt ttttgaccgt
    26341 aatttgcgct tcaatatgca acatttccca acaacttctt tcagatttga tagttcgatt
    26401 aatttcgaac tatcataata taacatagca gcaagttccg cgcaattaaa atgtaagtta
    26461 tgatatgata tttatatgaa aaagttaaat gagctctcaa aatcagattt attattaatt
    26521 ttccaagcat taagcgatcc aatccgtctt gatattttcc tatgtttact gaaaagcaaa
    26581 gaaaaacgct tctctggcac aacttacaat atctccaaat ctaccatgtc tcaccacatt
    26641 aaactgctta aagaagcaaa acttattaat ttaagaaagg aaggaaccac gcatatttat
    26701 tcggtgaatg aagcattagt ggaagaaatc ggctacttct ttgatgcatg taaacataat
    26761 cacaaataaa ccatgaattt catctttaaa attgttaacc aggttaatat tttgatatac
    26821 tttaaatatt aacttactta aggatgtggt tttttagtga agcgaatact cattagatcg
    26881 ggtatgcgac cgaccaatgt ctacacgccg gaagacatct atttaaagga tcgaaccggg
    26941 tttaacaatg gtaatcttgc gtatcaatat agcatttatc gagctttgtg gaatgatgat
    27001 gtagaaatac atgctgacgg tctttcatct aaccccaatc tcgcagaaaa aatcaatgaa
    27061 aattacgacc tctatgttat gcctttagct gacgcatttc gagacgactt taggccagta
    27121 ctccgcaatt acacccaact cattcgcaaa ttaaaaatcc cagtcatcgt aacaggcgtc
    27181 gggttaagag cgaattacga accacaacta gacgaaggtt tttcttttga tgaagatgtt
    27241 actaactttg ttaaagcagt cctagaaaaa tcagctcaaa ttggggttcg aggacaaatt
    27301 actgcagatt atttaaaaaa actaggattt aacgcagaac ttgacttccg agtaattggt
    27361 tgtccgtccc tttatacatt cggacgagaa ataaaattaa gagattttca cttaacagat
    27421 caatccacca tcgctattaa tgcatcccca acttcttcag aaatagctat caatttcctt
    27481 aacaacatga ttactacata taaagactat cactttatcc ctcaacacct agacgaattc
    27541 catttaatgt atgccggcgg tccagatatc tctagtgata tcaatggcta cccaacaaat
    27601 atccaacata agtattatca agaaggtcga gtaaaatatt tcactagcat gcctagttgg
    27661 ttcgattttg tgaagaaagt tgattttagc attggctctc gcctacatgg aaacgtcatt
    27721 ccaacaatag tcggaacacc taatatttct ttcgtacaag atgccagaat gcgtgaacta
    27781 gcttcctacc atgcgcttcc tcacgtaacc atcgatgaat tagaaaaaac caa
//
LOCUS       DABQVC010000011        27136 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.011,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000011 DABQVC010000000
VERSION     DABQVC010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 27136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27136
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.011"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(38..853)
                     /locus_tag="IBJ56_000340"
     CDS             complement(38..853)
                     /locus_tag="IBJ56_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HAM3416624.1"
                     /translation="MKKNIFKLMMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFY
                     VVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTA
                     NLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGIS
                     PKDFADSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSH
                     GLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK"
     gene            complement(1134..1502)
                     /locus_tag="IBJ56_000341"
     CDS             complement(1134..1502)
                     /locus_tag="IBJ56_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HAM3416625.1"
                     /translation="MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLA
                     NKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSK
                     GILVKQGLPAVLALVAVLLV"
     gene            1649..3064
                     /locus_tag="IBJ56_000342"
     CDS             1649..3064
                     /locus_tag="IBJ56_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HAM3416626.1"
                     /translation="MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQV
                     FDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPT
                     FAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISG
                     LILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVF
                     AFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILV
                     FISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRA
                     LVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKL
                     YPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAF
                     VFGLIMACIGLLCSLFIRKAK"
     gene            3195..4199
                     /locus_tag="IBJ56_000343"
     CDS             3195..4199
                     /locus_tag="IBJ56_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HAM3416627.1"
                     /translation="MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKL
                     IRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLL
                     GEPEFVEDMSGEDLDITALKRNTKDLVCAFPKISCVVIGVPGIEIGGKLRAMDFPLLL
                     NVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNG
                     EILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNF
                     YFGQKDFTEELTEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
                     "
     gene            complement(4231..5547)
                     /locus_tag="IBJ56_000344"
     CDS             complement(4231..5547)
                     /locus_tag="IBJ56_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAM3416628.1"
                     /translation="MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAG
                     REKLEIVGNLAKRMVEKAGVDMEVHLTLDREEALKDADFVTTQLRVGLLDARVKDERI
                     PNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVL
                     RYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTK
                     DVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAE
                     HGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQ
                     IVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAE
                     AAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK"
     gene            5749..6501
                     /locus_tag="IBJ56_000345"
     CDS             5749..6501
                     /locus_tag="IBJ56_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAM3416629.1"
                     /translation="MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVST
                     TTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQI
                     QNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLS
                     DKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEM
                     YQEANITSQLPALYTIENIAREIRTQIDKEKM"
     gene            6608..7051
                     /locus_tag="IBJ56_000346"
     CDS             6608..7051
                     /locus_tag="IBJ56_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416630.1"
                     /translation="MYSNRKEKVVFTLIMCSLMILCMSSYNIFLENGIGANSFMIILK
                     AFVPFLFIGFLLDFFVVGKIVYRLHAHLVSEDASKFKKIIMMQLLMVTFMCVLMSTLS
                     LIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL"
     gene            complement(7097..8758)
                     /locus_tag="IBJ56_000347"
     CDS             complement(7097..8758)
                     /locus_tag="IBJ56_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HAM3416631.1"
                     /translation="MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGL
                     PPIYGLYASFLPVIAYVIFASSPQLVFGIDATASAITGSIILGTAGLAAGSKEAIALA
                     PILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGD
                     SFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFF
                     KLDQYNVDIVGKIPVGFPSLALPDFGASSWALAVGGGLVCAIATFAGSLLPSESFAMR
                     NKYTIDDNRELFAYGISNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIA
                     LIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLL
                     VGVIFGVLLGIFLSFINVVSRSMKSPIAILGVIEGRHGYFDLKRKPEAKPIPNVVIYR
                     YSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGI
                     EYYFADLIDHLKTSFRKHDLGYIIDNGYTKKTVEDALEAYYAEHK"
     gene            complement(8898..9638)
                     /locus_tag="IBJ56_000348"
     CDS             complement(8898..9638)
                     /locus_tag="IBJ56_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3416632.1"
                     /translation="MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSENDV
                     DKLQQILFFKELDFPLKKIKQILDDPFFDKNVALDLQRHLLIEKKQRIETMLATLDQT
                     IRNEKGEITMTNKEKFTGFDFSTNPYEEEAKKRWGDKVVEKANEKVNNMNEKEKLTLK
                     ESFDAEFRHLASVRELSPESEEAQLAIDHFFHYLNDTHGNIYSLEAFADLGEMYVADE
                     RFTKNIDQFGDGLSHFLKEAMNIYAKNK"
     gene            9868..11343
                     /locus_tag="IBJ56_000349"
     CDS             9868..11343
                     /locus_tag="IBJ56_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416633.1"
                     /translation="MIGKVKSISMWLWHHLTPQIFAVICVFIITLIALFVPPYIGMAD
                     NGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALL
                     LNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADT
                     AYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNA
                     PIAVVIAVCGILVFFIRKNRAFRISAAATFFVIFLSGVVMYAFIPGEFVTINQYQTMT
                     RGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTV
                     LSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSIYSDVKEKL
                     APAKFTFLILWALVFLICYGVSAFKHFREKNIRGMLLFDLVVLLIGSGFAVILVTIVG
                     DGEADLTKHNFLFNVCFDLTMLIGAASLLEVYMKKRGERNA"
     gene            11336..12832
                     /locus_tag="IBJ56_000350"
     CDS             11336..12832
                     /locus_tag="IBJ56_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416634.1"
                     /translation="MRKKLIVSILLAFMIFVVGGHSAIAKTDDGVVVFYDSLATGTEN
                     EGNMDALLRMLNSLGKRVTIYSWEENPDLSQTSEIIVLQNKKDGLASDWTEKLAKSKA
                     KIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSF
                     GEMDAAENGQAAYGVQAGNYAYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITG
                     VNPFIDFDLLKKTADTFYEKGIPFIVSAGPVFYNQDFQAAKNYAEILRYVQAKNGTIM
                     MNVPAVTYGDSPAGELEKIMQKSVHFFAENDVAPLGVTAELYWNFDKVYGVEGFAPFN
                     TGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRNFPIDIAITYSFFDNEK
                     ELKAAAEELATDNISDFRFQDHGVKTNKDTIESSAGSLYINNQSVTLDGDLNYIKTKN
                     KTVKQAGSLEGFFGYQNTFFTIVIVLSLGIIGVLFVFGYRLYMKKYMK"
     gene            12843..14093
                     /locus_tag="IBJ56_000351"
     CDS             12843..14093
                     /locus_tag="IBJ56_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAM3416635.1"
                     /translation="MVIADYLALFAVVCIWGLLLINIVLIVAGYVYYLKNEARKVPEI
                     PAEVPFVSVMVPAHNEGKVIVKTVESLLAFDYPVDRYEIIVINDNSSDNSSELLAAIQ
                     AKNPTRFLKIINTDNITGGKGKSNALNIGFAESRGELVAIYDADNTPERQALRILVGE
                     ITNDAKLGAVIGKFRTRNRNASWLTRFINIETLSFQWMAQAGRWALFKLCTIPGTNFI
                     VRRSLLEEIGGWDVKAVAEDTEISFRIYMMGYRIKFQAKAVTWEQEPQTLPVWFKQRS
                     RWAKGNIYVILKNVPLLFKREGRRVRFDILYFLSIYFLLLTSLIVSDVLLVLYALGLV
                     HTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIMLMYVTYCQLWMVVAA
                     YGFFIFLKDTVLKRETKWYKTERF"
     gene            14109..16160
                     /locus_tag="IBJ56_000352"
     CDS             14109..16160
                     /locus_tag="IBJ56_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HAM3416636.1"
                     /translation="MKKLTVIGLLMFAVLFLYRPDVLAADKNYQTVFGTDKTAQGKFT
                     TTKQNFTVENYWDVSNANVKLVYTITQLSEKEVSTMTLKINDVAFYSFKPDKADKGTK
                     QIEIQIPKDKLKKGVNVLSIESFVYTDLPDGRCTIDDTPANWLQFDKTSAVNVSYSDK
                     AFQKTIAEFGERFTGIDTVKSEQGAVAVSNKAGDAELGAALEGLSGFSAANTLEDKNI
                     AFGQYEEAKTRDGKNYLVLFSSYDNLPNDLKSQIKDDNKLEKQALFQVVTVGNTNTLV
                     VTSKSNDALKKAGKLIANQNYLSQLGTNTKWLTTDEKIDTPATNVDKNTKLTTTGDKL
                     KGIGHITQDYFISMPANRSASTGTEVSLDFRYAQNLDFEHSLVTILVNGKPIGSQKLT
                     AKKANGDKLTFQIPSDLNVKGDFSVTVAFDLVLTNNYCGFIADSEIPWAYITPESKIN
                     LNTSEETDLLFEQYPYPFIANGDFNNAVVVVPDKLTTEDTDSLANIFNLLGRFHDGNR
                     GDLTAVHAANWKKPKEGSNIIAVGTMNNNPVIKNANDDLYFQYNKTGDYFLSNEKISI
                     EKNYGKQLGSVQLITSDGVPILAVTGPGAKQTELGSDLIATKANLAKIYGDGAIVDTD
                     NTIHSYRFKKAADTQEESFGSKISNNKEVTVFGAFALLTVVILVVAVLLILRKYRRSR
                     K"
     gene            16175..17029
                     /locus_tag="IBJ56_000353"
     CDS             16175..17029
                     /locus_tag="IBJ56_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAM3416637.1"
                     /translation="MKKITNNLFADIGFLFFILLCFITIGFMINTPDEYLRNIILLNI
                     TFLLVIITYFTNLTLGLILNVLYIFIYATYIIYEIVANQIAYGFGSYFWLIITPLFTV
                     ASAMFTRNTSRLQEENTKIKQQNLYLGTIDQETLLKNIVSFQNDERIFSSISRRYDLP
                     LSLMVIKVRHWRELKRFQSEEEMRLALQDISAILETCIRTSDVLYLLDKDDATWGLLL
                     LTDEPGGKLVADRIKSRIAEANTEEFAAKYRVKLELRIGTSQFDSEKVKTPLDFIDLA
                     TKELEYDV"
     gene            17089..17919
                     /locus_tag="IBJ56_000354"
     CDS             17089..17919
                     /locus_tag="IBJ56_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAM3416638.1"
                     /translation="MNLEEIVDCMLLNENDKEIQRTQTEHRIKLVDFWQVKNGDRVLE
                     VGCGQGDTTAVLANAVGASGFVQGIDIAPRTYGAPFTIGDATDHLQKSKLGAQIDFKL
                     GTDILNGDITFPEDAFDVAVLSHASWYFSSKSELTMMLELLSKWAKRVCYAEWDTRIT
                     DVKQTSHMLAVLTQSSYEAFKQDTQSNIRTFITPIDMQEIIQEHNWKMGAETSIFSEK
                     MQDSRWEIGYVKDFITKELEADLGLPEKFKAFLLSQSKLITLENSLPMASYCTSWQVK
                     "
     gene            17997..18266
                     /locus_tag="IBJ56_000355"
     CDS             17997..18266
                     /locus_tag="IBJ56_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HAM3416639.1"
                     /translation="MRAVLTVIGKDNVGIVAGVSNKLAELNINIVDVSQTIMDGYFTM
                     MMMCDISQITKEFDEVKAELAGKGEDLQVKIHIQREEIFNAMHKL"
     gene            18285..19640
                     /locus_tag="IBJ56_000356"
     CDS             18285..19640
                     /locus_tag="IBJ56_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HAM3416640.1"
                     /translation="METNQILETIRMIEEEKLDIRTITMGISLLDCMDGDGEVARKKI
                     YQKIVTKARNLVAVGEAIESEFGIPIINKRISVTPIAIIAGSSADTDYVEFAKTLDAA
                     AKEVGVNFIGGYSALVQKGYTKGDEILIRSIPQALAQTERVCSSVNVGSTRTGINMDA
                     VRQMGEVIKETADLTADTQGLGCAKLVVFANAVEDNPFMAGAFHGVGEADCVINVGVS
                     GPGVVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA
                     PTPAIGDSVAHILEEMGLEMVGTHGTTAALALLNDAVKKGGVMACGHVGGLSGAFIPV
                     SEDAGMIEAVQQGALNLEKLEAMTAICSVGLDMIAVPGDTTAETLAAMIADEAAIGVI
                     NNKTTAVRVIPASGTKVGDMVEFGGLLGTAPVMPVNGKSSVDFIARGGRIPAPIHSFK
                     N"
     gene            complement(19680..20648)
                     /locus_tag="IBJ56_000357"
     CDS             complement(19680..20648)
                     /locus_tag="IBJ56_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAM3416641.1"
                     /translation="MANIQEIAKLAGVSSATVSRVINKRDYVSDETRKRVQTIIDQLD
                     YVPNINAVSLKKGATKLIGMVIPSFTDSLNVFLKSFTMIAQEHGYNVTLFMTRIDPDK
                     ELEALEMLRQKQIDALVLVIRSNDWKTIEHYTKYGPIVTWQRVESEKIPSVFMNQYDG
                     YTLALEHLYAKGYRKFVNVYGNTTGLNTQSRMLAFKDFCARYELDPHEFRQFYGQGSR
                     QDGEKIAHWFAETEHKPDAFLTPNDYFAAGLLTEARRLGYSVPEDFAICGFDNMEIAH
                     LLDITTIHYPVNLQAENAFTLIMNQLFGSNLPLLDLDFHLVERKTT"
     gene            20820..22142
                     /locus_tag="IBJ56_000358"
     CDS             20820..22142
                     /locus_tag="IBJ56_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAM3416642.1"
                     /translation="MKKGVKIVTIGGGSSYTPELVEGFIKRYHELPIRELWLVDIEAG
                     REKLEIVGNMAKRMVKAANIDCEVHLTLDRREALKDADFVTTQFRVGLLDARIKDERI
                     PLSHGIIGQETNGAGGMFKAFRTIPVILGIVEDMRELCPDAWLINFTNPAGMVTEAVL
                     RYGNWDKVIGLCNVPIGAVKSASDVLEKPEEDLFFKFAGINHLHWHRVFDKDGTELTE
                     KVIDGLYAPDANPGKVVENIKNMRFLYEQVKHLKMLPCPYHRYYYMTDAMLEEELASF
                     KNEGTRGEVVKKLEDSLFELYKDPNLDYKPEELSKRGGAHYSDAACEIINSIYNNKGT
                     VMVVSTRNNGAIDDVPYDSAVEITSVIRAHGAEPINFGKFPPAQRGLLQVMKSMEELT
                     IEAAVTGDYATALQAFTSNPLVPSGDLAKTILDEMLEAHKEFLPQFAK"
     gene            22246..23517
                     /locus_tag="IBJ56_000359"
     CDS             22246..23517
                     /locus_tag="IBJ56_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HAM3416643.1"
                     /translation="MQTNLERIKKHIEKLDTYTATPGQGTTRFTYSKEDLDARNYLKQ
                     EMAKVGLAVSEDAIGNIYGRLEGENPNLPAVIVGSHFDSVPNGGAFDGPAGVITGLEV
                     ATVFYEQQIKPHFPLEIIAMVEEEGARFGAGLLASRTITGKVTKEMLHEMKDIDGITA
                     AEAMAKVGFDANQVVTAIRTKESVKAFIELHIEQGPVLENANEDVALVDTVVGLTEIK
                     VTVKGQAGHAGTTPMLDRKDALITAVEILGQLPELAIQEGGGTVLTVGKLNVYPNGAN
                     VIPDKVVFTVDIRAKDEIHVQNTLAKTKEIIQSAEKNGITCEIEDMLYEPPTHLSKEI
                     HQALTESADQLGLKYRTMVSGAGHDAMIFAGLTEVGLIFVPSHNGISHAPEEWTDYDK
                     LQKGIEVVLETVKKWTEESANESENKTSSFK"
     gene            23483..24658
                     /locus_tag="IBJ56_000360"
     CDS             23483..24658
                     /locus_tag="IBJ56_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014600561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAM3416644.1"
                     /translation="MNQKIKQAVLNNEEAMIAFRRDLHMHPELQWQEFRTTDKVAKEL
                     DKLGIPYRRTEPTGLIAELKGGKSGKTVALRADMDALPVQELNQDLPYKSTEDGKMHA
                     CGHDAHTAMLITAAKALVEIKDELPGTVRFIFQPSEEIAEGAKAMIAQGAMEGVDHVF
                     GIHIWSQTPSGKISCVVGSTFASADIIQIDFKGQGGHGAMPHDTIDAAVIASSFVMNL
                     QSIVSRETDPLDPVVVTIGKMDVGTRYNVIAENARLEGTLRCFNNITRAKVAKSIEHY
                     AKQTAAIYGGKAEMIYKQGTQPVINDEKSALLVQETITESFGEEMLYFERPTTGGEDF
                     SYFQDEAPGSFALVGCGNPEKDTEWAHHHGRFNIDESVMKNGAELYAQFAYNFLNQN"
     gene            complement(24706..25722)
                     /locus_tag="IBJ56_000361"
     CDS             complement(24706..25722)
                     /locus_tag="IBJ56_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose 1,6-diphosphate aldolase"
                     /protein_id="HAM3416645.1"
                     /translation="MVQITKGKFDGLQRLSNEKGVIAALAIDQRGSLKKMIQQAKGTE
                     NKKDVEDFKQLVSEELTPYASAILLDLEYGTPAIKARHEGSGLLTSYEKTGYDATTPG
                     KLPDLIEDLSALRIKENGGDAVKILVYYDPDEPAEINEIKYAFLERIGAECRAVDIPF
                     FLEPITYDATVTDSGSLEYAKLKPAKVKASIKEFSKPRYGVDVLKLEVPVNFKYVEGF
                     AEGEVAYTQDEAARHFEECSDLSPLPFIYLSAGVTSEMFHKTIQFANQHNVQYSGVLC
                     GRATWADGIEVYGKQGDDALREWLRTQGKENITSLDKLLDEGAVPWWTKYGSFEDVHV
                     VEKQ"
     gene            25959..>27136
                     /locus_tag="IBJ56_000362"
     CDS             25959..>27136
                     /locus_tag="IBJ56_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HAM3416646.1"
                     /translation="MNRRERRKHKRRKNMIIVLSTVFLLFIATSWMIYEFKSKQEQTV
                     SAPTKKKAATATNPPENAATNEPEETKEPEPVEEKPKETIVKNQEIDNYLQKIGFSGS
                     ALVVRDGKTIIQKGYMYANRDEKVLNTPDTLFYIGSSQKAIIATALLQLEEKGKINTN
                     DPISKYIPDFPNGNKILVKNFMNHTSGIVGRPKLTSNMTPDQIIKAIEKRGIKSQPGK
                     WDYLDANYAVVGYLVEKVSGQPLATYLQENIFTPAGMKHTGYYQKDVDGGKNVSTGYK
                     IDENGVFQSPKLADLTKLYGAGDISMSTTDMYLFDKALMDKKLISEASLKKMFTSGSK
                     STYGMGFYVDSGSYNSHGVVTGWDVSNSVSHTGRTYVILFSNVQNHIASFGKVNNDIY
                     G"
BASE COUNT         8417 a         5006 c         5692 g         8021 t
ORIGIN      
        1 cccaaaataa attgttttgg gctttttgtc tggctattta tttagaacct ttttcgacat
       61 agcttaagtc atttacatca ccaatagtga atttaccatc tttgtaagtg atttttgtta
      121 cacttgcatt tttgatacct tctgcaggca gtttgtatcc tggttcgata gtatcaagaa
      181 gcgcaccgat gcttagtccg tgggaaacta gtaatacatt gctatcgcca tttttgcttt
      241 cttttttagc aacatctgtt aaaccttctt ttagacgagc ttggatagtt gcatagtctt
      301 cagcaggcca gttttcgcct tctttcacac gagttttatc aagagctgct acactatcag
      361 caaaatcttt tggcgagata ccagcttttt gccactcttc taaagtttta ccttggcttt
      421 tcgcaatatc agtccacata ttttcattta aatcgccttc ataagaacca aaattgaatt
      481 cacggaaacg tggatcagtt tgtacttctt tatcagcgga tttatcgctt tctttcaaaa
      541 ttaagtttgc agtttggata gcacgaccac tgtcgctgct gtaagctgca gagaaatcaa
      601 cgtcttttaa gcctttacca gcgcttttaa ctacttcttc accagcggga gtaagaaccg
      661 catcagacca accttgtaca cggtcagttg tgtttagcat tgttttacca tgacgtacta
      721 cataaaatgt cacagtgcca tcttctttag tttcttttgt ctctttcttg tctgcagatg
      781 tactgttacc gcaacctgca attaatagta ctgcgcataa cgccatcatc aatttaaaaa
      841 tatttttctt catcttgttc tccttttttg ttagtattta gcaaaataaa aacctagata
      901 aatcgaaaac tagcccaaaa agccaattct ccatttatct aggttatgcc caagttggta
      961 acattcctga ataaggatat ttgtttatag gacgatttta gcatggatgg aaagcgttta
     1021 caagtctgtt tttgataaaa attggaaaaa taagtaaatt atttgtttga aacgctaatt
     1081 caatttccat tataaaaagg ctcagattta atccaagcct tttcctgcaa cacctaaacc
     1141 aacaaaaccg caaccaacgc caaaaccgcc ggcaagccct gtttcaccaa aatcccctta
     1201 gaagaagtcg ctccgccaaa cagcgccgcc acaaccacac aactcaaaaa gaaaatctgc
     1261 acagtctccg caaatcctgc tcccgcgaaa aacaatcccc acacaagccc tgccgcaaga
     1321 aagccattat aaagcccttg attcgcaaac agcgtctgta cttttttatt cgcaagtaat
     1381 tccttctcca cgccaaatgt cttggctgcg agtttggtat tggcgaaaaa catttctaaa
     1441 atcattatat aaatatgctc gatcattacg atgaaggtta aaataaatgc taaaatggcc
     1501 ataaaaaatc cctcttttct acttcgaagt atagcatagc ttgtaaattt ttcgtaaaaa
     1561 tagagcttga aacgttgact tattggcgaa atctccgtaa tatcaaacgt agactactta
     1621 atttttagtc tgaaaagggg gaaactatat gcaacaagaa gcaacaggtg ggcagaaaat
     1681 tcggccgata ccgattattg cctcattttt gatggcgggg ttcattgggc tattcagtga
     1741 aactgctctt aacatggcgc ttagtgattt gattcaggtg tttgatatta gttcagcgac
     1801 agtgcagtgg cttacgacag gttatttgct aacgcttgga atattagtac cgatttcggg
     1861 attactttta caatggttta caacacgagg tttatttttt acagcagtga gtttttcgat
     1921 tgctggtacg ctgattgcgg cgctttcgcc aacgtttgca atgttaatga ttgggcgtgt
     1981 agtgcaagca gtaggtacgg cgctattact accattaatg tttaacacga ttttactgat
     2041 tttcccagag cataaacgtg gctcagcaat ggggatgatc gggctggtaa ttatgtttgc
     2101 tccagcagtt ggtccgacaa tttcaggact aattttagaa aacttaactt ggaactggat
     2161 tttctggatt tccttgccat tccttattat tgcgttatta ttcggaatga aatttatgca
     2221 aaatgtttcg gttgttacga agccgaaaat tgatatttta tcgattattc tttcgacgct
     2281 aggttttggt ggagttgtat ttgcctttag tagtgcggga gaaagtggtt ggggaagcgc
     2341 aacggtatta gtttcaatta tcgttggtgg acttgcgctt ggactctttg tttggcgcca
     2401 actaacaatg gaaaaacctt tgatggactt gaaagtattt aaatacccaa tgttcacatt
     2461 aggacttatt ttagtattta tcagctttat gatgattctt tcaacgatga ttttactacc
     2521 gctatacttg caaaatagtt tagcgctcgc agcattttca gcgggattag tattacttcc
     2581 gggtggggtg ctgaatggtt taatgtcacc atttactggc cgtttgttcg atgcatacgg
     2641 tccacgcgca cttgttatcc cagggtttat cgtagcggtt gtggcactat ttttcttaac
     2701 gagaatagaa gttggaacat ctgcattaac catcatcgta cttcattcgg tgttaatgat
     2761 tgggatttcg atggtcatga tgccggcaca aacaaacgga ttaaaccaat taccgccaaa
     2821 attatatcct gatggtacgg cgattatgaa cacgttgcaa caagtttccg gcgcgattgg
     2881 aacggctgtt gcgattacga tcatgtcagc tggacaaaaa gcttatatgg aaacggcgca
     2941 aggagtagga ccggagcaaa tggttgcttc actgacagca ggaattcaaa atgcctttgt
     3001 ctttggactg attatggctt gtattggtct tctgtgctcg ttatttattc gtaaagctaa
     3061 ataataaagc gaagagaact tctcgtaatg agaggttctt ttttgttttg acaaatgggt
     3121 tctgagtggt taaaatgata gtaaatatag tttataaagt ttatttaata actttacgaa
     3181 tggagtggtt gatgatggca attcctcgtg atttaaaaga attgaataag aaaaatatca
     3241 agtcgatttt acggcaacaa ggtgcgatga cgaaagcgga aatcgccgaa gtgactgggc
     3301 taagtgtagt tacagtgaac aagctgattc gtgatttagt ggaaaatgaa gagattttag
     3361 aacaagataa ttcggttgcg actggcggaa gaagagctgt ttcgtatgaa attaatccta
     3421 attttcagca ggtgttggtt attagtttgc aagaaaagtg gaagaaaatt acttattctt
     3481 tttcggtcta taatttgctt ggtgagccgg agtttgtgga ggatatgtct ggggaggatt
     3541 tggacattac tgcgctgaaa cggaatacga aagatcttgt ttgcgctttt ccgaagattt
     3601 cttgtgttgt aatcggggtg ccgggaattg aaataggcgg taagctacgt gcgatggact
     3661 ttccgctact tttaaatgtg caattgcggg agactttgga ggcggaagtg aatttgccgg
     3721 tgttggttga gacggatacg aatgcggcaa ttttagggta taaaaatcgg ccggtgaaag
     3781 aggagaatat cgttggactt tattatccgg agcgttttcc accgggtgcg gggcttttga
     3841 tgaacggaga gattttgaaa ggtcagaatg ggctggctgg ggagattaag catatgccgc
     3901 ttcaagtgga ctgggataac tttgattttt cggtggatga aattaaagcg cacattcgta
     3961 aaatggtgct gctcacgatg agtttttatg atccggaaac gattgtgctc tatacaaatt
     4021 tttattttgg gcagaaggat ttcaccgagg aactgacgga agagttaaag caagtttatc
     4081 catatgcggt tttgccggag attgtgttgt cgcgtaagtt tacgacggat tatcggattg
     4141 ggcttttggc gtttgggatt gattatttgg agaataatat gacggattgg cggatataaa
     4201 aaaagagccc tttgacaggc tcttttttac ttatttaaag aaattcggta aatactcttt
     4261 atgcgcttct aaaagttcgt ccagcatttc gcgggctaca gattcgcttg gagttagtgg
     4321 gttgattgtc attgcaagga gtgctttgtc gtaatctcca gtaactgctg cttcggctgt
     4381 taggcgctcg aaagttttga tttcttggat gatgccgttg atagcgattg gaaggcgtcc
     4441 gcttgctagt ggaattgggc cttggcgagt gatgacacag tttgtttcta ctgcggaatc
     4501 agggtcgata tcaaggatgg caccattgtt acgagtatta acgatttgaa tgtcgcgttt
     4561 gtcgttgtag atagagttaa ttaggttaca tgctgcttca ctgtagtaag cgccgccgcg
     4621 ttgttctaat tgttttggtt tttcagcaag ttcttcttgt ttgtaaagct cgaatagttc
     4681 agcttctact tttttaacaa cttctgcacg agtaccatgt tctgcgtatg cgcgagcttg
     4741 gtcttccagt tgttgttttg tttgccagta gtagcgcaag tagtcgattg gaatcatgtt
     4801 tagtgtacgc aagaacgttt tgtcccaacc agttgcgttg atgtttttaa ggcttgagcc
     4861 agcttcatct tctgtcattt tgaaaacaac atcttttgtt acgtctttgc cattatgata
     4921 aacagttttc gcgaatacca tgtggtttag accaacgaat tctacgtaaa tttcagaaac
     4981 gtctacgcca agagtttcag cgatattgcg ttcgatgccg atagggccgt tacataagcc
     5041 gacaactttc ttttggttac tgtaacgaag aactgcttct gttaccattc ctgcagggtt
     5101 agcaaagttg attaaccaag catctgggca aaggcgttcc atgtctttac aaatatctaa
     5161 aataactggg attgtgcgaa gtcctttgaa catgccgcct ggtccgtttg tttcttgacc
     5221 aacaacgcca tatgaattcg ggatgcgctc atctttcaca cgtgcatcta gtaaacctac
     5281 acgtaattgt gttgttacga aatcagcatc ttttaaagct tcttcacggt ctagtgttaa
     5341 atgtacttcc atgtcaacgc cagctttttc taccatacgt tttgctaaat taccaacgat
     5401 ttctaatttt tcacggccag cttctacgtc gactaaccat agttcacgaa ctggtaattc
     5461 gtcttgacgt ttaataaatc cttcgattag ttcaggtgta taacttgatc cgccaccaat
     5521 agttgcgatt ttaatacctt tagtcattat ttatacctcc aaggatattt ttttgaaaag
     5581 gcttacttat ttggtatcac cttttcttct cacagttata gtataggaat tttatgaaaa
     5641 aatagctagt atttgacgag gtttaggtaa ggattttcta agtaggaact tgtcacattt
     5701 gagtaacgag gtgttacatg gtaaaataaa gcgaaaagag gtgcgaaaat gctttttttg
     5761 gataaaaatt tggaattaaa tgatacggaa ttagatattt ataattatat tgtggcgaat
     5821 ttagataaag ttgtttatat gcggattcgc gatttggcga cggaagcgca tgtgagtacg
     5881 acgacaattc tacgtttttg ccgaaaattt ggttgtaatg gtttttcgga gtttcgggtg
     5941 aaattacagc tttatttgga agagcagaag ttggcgcaaa ttgatatggc ggatgaaacg
     6001 acttatattg attttctaaa acggacggcg caaccggagt ttaaagcgca aattcaaaac
     6061 gcagtggaaa ttctccgtga ccgcgaactg gttttatttg ctggggtggg ttcgtcgggt
     6121 gtaattgctg aatatggcgc gatttatttt tcgtcattat ttacgctggc gctacatatt
     6181 gaagatccgc ttaaccaccc gttttaccat ttatcgagca aattatccga taaaatctgc
     6241 atgattgcga tttcggtgga aggggaaaat gaagacatca ttcgctacat tcaccaactg
     6301 aaggcgcaaa attgtaaagt aatttcgatt acgaatagcg cgaaatcaac aattgcaagg
     6361 ctatctgacg cgaacatcgc ttattatatt aataaggaaa tgtaccagga agcgaatatc
     6421 acgtcccaac taccggcgct atatacaatt gaaaatattg cccgggaaat aagaacgcaa
     6481 attgataaag agaaaatgta aaaagctaag ttttgcttgg atttccgagc aaaacttttt
     6541 ttgtaacaaa attgtcactt acgaagaatt ttttaatttg ctacgatagt tctttggagg
     6601 tgaaattatg tacagtaata ggaaagagaa ggtcgttttt acacttatta tgtgttcttt
     6661 gatgatttta tgcatgagct cttataatat ctttcttgaa aatggtattg gcgcgaattc
     6721 ctttatgatt attttaaaag catttgtccc gtttcttttt attggatttt tattagactt
     6781 ttttgttgtc ggaaaaattg tgtatcgtct acacgcccat ttggttagtg aagatgcttc
     6841 gaaatttaaa aagatcatta tgatgcaatt gttgatggtt acatttatgt gtgtgcttat
     6901 gtcgacgctt agcctgattg tgaaccaagg cgaatggagt catctaggta ttcttatttt
     6961 gcgcaattat tttgtggctt tatttttgca aatttttatc gtgtcaccgt ttgtgcggtt
     7021 aattagtccg cggatttttg cgcttttgta aaaatgaaaa acgcttagtc gagtttaggc
     7081 ccggctaagc gttttgttat ttatgttcgg cataataagc ctcgagcgcg tcttccacgg
     7141 ttttcttcgt gtagccgtta tcgataatat agccaagatc atgttttcta aagctggttt
     7201 tcaaatgatc aattaggtca gcgaagtaat attcaatgcc tttgtcatca agccatttga
     7261 gcaagtcttt catagattcg gttgcggttg tatcaatgtt aataatcgca ctcgcttcaa
     7321 aaatgactag ttttgtatca tcttgaactg cttcttttaa tccgtctgcg aatttgttga
     7381 aattcccgaa gaaaagagaa gcgctataac gataaatgac aacatttgga attggttttg
     7441 cttctggttt acgttttaaa tcgaaataac cgtggcgtcc ttcgatcact ccaagaatgg
     7501 caattggtga tttcatcgaa cgacttacta cgttaatgaa tgataggaaa atcccaagta
     7561 gtaccccgaa aataacgcca actaaaaggg taccaagtgc tgcaacaatc caaacagttg
     7621 cttcacgacg agaaactttg aataaacctt ttaacacatc tacatcaata atacctacaa
     7681 gggcagcaaa tacgatacct gaaagaactg gttgcggcat atagtaaagt aagccactta
     7741 agaaggcaac gattagcgca ataatggtcg cagcaacgat agaaaccatt tgcgttttac
     7801 cacgaaattg ttcgttagca gcagttctgg atacgctggc acttgctggg gaacaaccag
     7861 aaaacgcagc gacgaaatta gaaatcccat aagcaaataa ctcacgatta tcatcaatcg
     7921 tatatttgtt cctcatagca aaactttcac ttggtaaaag cgaaccggca aaagttgcga
     7981 tggcacatac taaaccgccg ccaaccgcga gtgcccacga acttgcacca aaatctggaa
     8041 gtgctagcga agggaaacca actggaattt tacctacaat atcaacatta tattgatcta
     8101 atttaaagaa ataagcagcc attgtcccaa gtactaaaac tacaagagac atagggattt
     8161 ttggtataac ttttttacaa gtgataacaa taatgactgt aaccacgccc atggcaaatg
     8221 aaatccaatt ggactggaaa aactgtccga aaataatgcc tagactagag aagaaactat
     8281 ctccgctttc ttttaggccc attatcttag gaatttgccc cataatgatg gagacactaa
     8341 gtccggaaat gaatccacta agaaccgggg ctgatatgta ttttgcgaaa cgtcctaatt
     8401 ttaatacgga gaaaagaact aaaaatattg cacaaaagaa tgcgagaatt ggggcgagcg
     8461 cgatagcttc tttagatccg gcagcaagtc cagctgttcc taaaatgatg gatcctgtga
     8521 tggcacttgc cgttgcatca attccgaaaa caagttgtgg tgaactggca aaaataacat
     8581 acgcaataac cggtaaaaat gatgcatata atccataaat gggtggaagt cctgctactt
     8641 gtgcatatcc cattgcaact ggaatcgtca gtgcagcaac accaacgcct gaaatgacat
     8701 catttcgtaa ataggatatt ttgtacccat ttagtgaaag caagatgtgt ttaaacataa
     8761 gttcctccct tgaaatgtat ttttattctt tattttacat cataaataca tattaatgaa
     8821 atcttatact atttaccccg ttctttgtta taccaatcat aaaaccacga tctcttttta
     8881 agaaatcgtg gcttttttta tttgtttttg gcataaatgt tcatggcttc tttgaggaag
     8941 tgagaaaggc catcaccgaa ctgatcgata tttttagtga agcgctcatc agcaacgtac
     9001 atttccccaa gatcagcaaa ggcttctagg gaataaatat tgccgtgggt gtcattcaag
     9061 taatggaaaa aatggtcaat tgcgagttgg gcttcttctg actcgggaga gagttctcga
     9121 acagatgcta aatgacgaaa ttctgcgtcg aaactttctt ttaaagttaa tttttctttt
     9181 tcgttcatat tatttacttt ttcattggct ttttctacta ctttatcgcc ccaacgtttt
     9241 tttgcttctt cttcgtatgg attggtggaa aaatcaaaac cagtgaattt ttctttgttt
     9301 gtcattgtta tttctccttt ttcattcctg atggtctggt cgagggttgc tagcatggtt
     9361 tcaatgcgct gctttttttc tattagtaag tgacgctgca aatctaaagc aacattttta
     9421 tcgaaaaaag gatcatcaag aatttgtttt atttttttca aagggaaatc gagttcttta
     9481 aagaaaagaa tttgttgtaa tttgtcgaca tcgttttctg aataaatacg atagccattc
     9541 cagtcatctt tttgcgggac aagtaggcct attttatcgt agtggtggag tgtgcgcaca
     9601 cttacaccag tgagttcagc taattctttt atttgcatga gtgattcctc cttctgcttt
     9661 tactataaag tatgacgtcg cgtgatagtc aagcttgaat ttgtgtttat tataaccttt
     9721 ttagtggaaa agaaaattag ttgtagtcaa cttctttaaa aaaaatgaat aaaagcatgg
     9781 aaaaaaagtg ggcattctcg tataatgaaa tgtaaatgtg tctattttgt gacattggtc
     9841 tatcgtaaat aagaagggga tagcatcatg atagggaaag ttaaatccat tagtatgtgg
     9901 ctatggcacc atttaacacc gcaaatattt gcggttattt gtgtttttat tattacgctc
     9961 atagcgcttt ttgtgccacc gtatattggt atggctgata atggagactt tttccgaatc
    10021 ttctcgagta atggtttatt tgtcaataat acgaattatg acgcgctgca atttgggcat
    10081 tttgtgaagg agtttgggat ttatcagtac tttaatgaaa accaagtagc tatctactct
    10141 tcgcaaagta tttttattca aatggcgctt cttttaaata agcttttttg gtcaacaacg
    10201 gtttttgatg tgcgtttttt aggtggcttg caattagcgc ttcttttgcc ggcgatttat
    10261 ttgttagtgg cgggattaac ggcaaaaatg aaaggctggc cgggttatgt ggttgcggcg
    10321 ctgacggtat ttattttcgc agatacggct tatactgctt actttaattc ctttttcagt
    10381 gaagggctta ttttgattat gatgctgtat atttcggcgg gatttttgct tttatatcag
    10441 cataaatata atgattatgc gatgctaggt ttgatttttg tggcatccct tattttaatt
    10501 acggcaaaac agcaaaatgc cccgattgcg gttgttattg cggtttgtgg aatactcgtg
    10561 tttttcatcc ggaaaaatcg tgcatttcgg atttcagcag cggctacttt ttttgttatt
    10621 ttcttgagtg gggttgtgat gtacgccttt attcctgggg agtttgtaac gataaatcag
    10681 taccaaacaa tgacgcgcgg tgtgctactt gattcagaaa atccggagaa atcgctcgaa
    10741 gaaatgggaa tgaattccga atttgcttta ctcaaaggaa cgaattttta tcaaaaatat
    10801 aaaatgattg atttagactc aaaactgatg gaaaaagaat tttatcctaa ttataatttt
    10861 gttacggttt tgagttatta cttggaaaat ccgaaacaat ttgggaaaat gctagattta
    10921 tctgcgcaaa atagtttttc gattcgtcca tttgagatgg ggaattttga aaaggcgaca
    10981 gggtataagt ttaaagagaa aacgcatttt ttctccatct atagtgatgt aaaagaaaaa
    11041 ttggctccag cgaaatttac gtttttaatt ttatgggcgc ttgtttttct aatttgttat
    11101 ggggtgagtg cttttaaaca tttccgggag aaaaatattc gtggaatgct tttatttgat
    11161 ttagttgttt tgctgattgg ttctgggttt gcggtgattt tagtgacgat agttggcgac
    11221 ggggaagcgg atttaacgaa acataatttc ttatttaatg tgtgctttga tttgacgatg
    11281 ttaattggag cggcttctct gctggaagtt tacatgaaga agagaggtga gcggaatgcg
    11341 taaaaaactg attgtaagta ttctgctagc attcatgatt ttcgttgttg gtgggcattc
    11401 cgcaattgca aaaacggatg atggtgtcgt tgttttttat gatagtttgg cgacaggtac
    11461 agagaatgaa ggcaatatgg atgcgctact tcgaatgtta aatagcttgg gcaaacgagt
    11521 gacgatttat tcttgggagg aaaatcctga tttaagtcaa acaagcgaaa ttattgtact
    11581 tcaaaataaa aaagatggct tagcaagtga ttggacggaa aaattagcca aaagcaaagc
    11641 gaaaatagca tacataggcg gaaatccccc aacattttta acggataaat tgcaactgaa
    11701 aactaaagca attacagagg cttctatcac aattcaaacg caagctggat tatctggaaa
    11761 accacagcta gtgaacgaaa ccaatctaat aacttcctat aaaggaacaa gctttggaga
    11821 aatggatgct gctgaaaatg gacaagctgc atacggcgtt caagcaggga attacgcgta
    11881 cgcacctctt tttcaagcag ataatacgag tgaatttgct ctaatggacg tactcaaagc
    11941 attattcgat attaaaacga ccaccaacca atatgcgttt attacgggcg taaatccttt
    12001 tattgatttc gatttgctca aaaaaacggc agatactttt tatgaaaaag gaattccgtt
    12061 tatcgtgagt gcggggcctg ttttttacaa tcaagatttc caagcggcga aaaattatgc
    12121 ggagattttg cgctacgttc aagcaaaaaa cggcacgatt atgatgaacg ttccagcagt
    12181 gacgtacgga gatagtccag cgggagaact tgaaaagatt atgcaaaaat cggtacattt
    12241 cttcgcggaa aatgacgtcg caccgcttgg agttacagca gaactgtact ggaactttga
    12301 taaagtatat ggcgtagaag gtttcgcacc gtttaatacc gggattttgc taccaaatca
    12361 aaaaatcatc catacgacga aagtaaataa tggcagtgcc tttgaaaagt ctccgtatag
    12421 cgtggcgaac gatttttatg cgactacgac tgaagggaga aactttccga ttgatatcgc
    12481 aataacctat tccttctttg ataacgagaa agaattaaaa gcagcagccg aggaactagc
    12541 aactgacaat attagcgatt ttagatttca agatcatggg gtaaaaacaa ataaagatac
    12601 gattgaatca agtgctggtt cgctttacat caataatcaa tcagtaacac tcgatggcga
    12661 tttaaactat attaaaacga aaaataaaac agtcaagcaa gcgggcagtt tagaagggtt
    12721 cttcggctat caaaatacct ttttcacgat agtaattgta ctttcacttg gcattattgg
    12781 ggttttattt gtctttggat accggcttta catgaaaaaa tatatgaaat gaggtgaaat
    12841 aaatggttat tgcagattat ttagcattat tcgcggtggt gtgtatttgg ggacttttgc
    12901 taattaatat tgtgttaatt gttgcaggat atgtttatta tttgaaaaat gaagcgcgaa
    12961 aagtgcccga aataccagcg gaagtaccat ttgtttctgt catggtgccg gcccataatg
    13021 aaggaaaagt aatcgtgaaa acagttgaat cactgcttgc ttttgattat ccggtcgatc
    13081 gttacgaaat tattgtcatt aacgataatt cttcggataa tagctcggaa ctcttagccg
    13141 ccattcaagc aaaaaatcca acacgctttt taaaaattat taataccgat aatattacag
    13201 gcggaaaagg aaaatcgaat gcgctcaata ttgggtttgc ggaaagtcgt ggggaactgg
    13261 tggcgattta tgatgctgat aatacaccgg aacggcaagc gctaagaatc cttgttggtg
    13321 agattacaaa tgatgcgaaa cttggtgcag tcatcggtaa attcagaacc cgaaatcgaa
    13381 atgcaagctg gttaacgcga tttatcaata ttgaaacgct tagttttcag tggatggctc
    13441 aggccggcag atgggccctt ttcaaactat gcaccattcc tggtactaat tttattgtaa
    13501 gaaggtcgct cctagaagaa atcggtggct gggatgtgaa agctgtcgcg gaagataccg
    13561 agattagctt tcggatttac atgatgggtt accgaatcaa attccaagcg aaggctgtta
    13621 cgtgggaaca agagccgcaa acattaccag tttggttcaa acagcgctca agatgggcga
    13681 aaggcaatat ttatgtaatt ttaaaaaacg ttccactcct tttcaaacga gaaggtaggc
    13741 gcgttcgctt tgatatttta tactttttat cgatttactt tttattatta acttccttga
    13801 ttgttagtga tgttttactc gtattatatg cgctgggact tgtacataca acgcttgctg
    13861 gccttagcgg ggcgctttgg ttgctagcca ttttactttt tgtcgcaggt acttttatta
    13921 cactcaccac ggaaaaaggc gaaatcagtt tttcaaattt gttatttatt atgttgatgt
    13981 atgtgacgta ttgccagctt tggatggtgg tcgccgcata tggattcttt attttcttaa
    14041 aagataccgt actaaaaagg gaaaccaaat ggtataaaac cgagcgtttc taaaaaggag
    14101 agtgcctaat gaaaaaatta actgtaatcg ggctgcttat gttcgccgta ctatttctgt
    14161 ataggccaga cgttctcgca gcagataaaa actatcaaac ggtttttgga acagataaaa
    14221 ccgcccaagg aaaattcaca accaccaaac aaaacttcac ggtggaaaac tactgggatg
    14281 tatcaaacgc taacgtaaag cttgtgtata caattaccca actgagcgaa aaagaagttt
    14341 ccacgatgac actgaaaata aacgatgttg cgttctactc ttttaaacca gataaagcag
    14401 acaaaggaac aaaacagatt gaaatccaaa ttccgaaaga taagttaaaa aaaggagtca
    14461 atgttctatc catcgaaagc tttgtctaca ctgatttgcc tgatggtcgt tgtacgattg
    14521 acgatacacc tgccaactgg ctgcaattcg ataaaacaag cgcagtaaac gtatcttatt
    14581 ccgataaggc tttccaaaaa acgattgccg agtttggcga gcgcttcact ggaattgata
    14641 ctgtgaaaag tgaacaaggc gcagtagctg tctcaaacaa agccggcgat gccgaacttg
    14701 gcgcagcact tgaagggctt tccggatttt ctgcagcgaa tacgttagaa gataaaaata
    14761 tcgcttttgg tcaatacgag gaagcaaaaa cgcgtgacgg taaaaactat ctcgtacttt
    14821 tttcaagcta tgacaattta ccaaatgatc ttaaatcaca aataaaagat gataataaat
    14881 tagaaaaaca agcacttttc caagtagtga cagtcggaaa tacgaataca ctcgtggtta
    14941 cttctaaatc caacgacgca ctaaaaaaag ctggcaaact aatcgccaac caaaattact
    15001 taagtcagct tggaacaaat actaaatggc taacaacaga cgaaaaaatc gacacaccag
    15061 cgactaatgt tgacaaaaat acgaaactaa caacaactgg cgataaacta aaaggcattg
    15121 gtcatatcac acaagattac ttcatcagca tgccagccaa ccgtagcgca tcaacaggaa
    15181 cagaagtatc acttgatttt agatatgcgc aaaacttgga tttcgagcat tcattagtaa
    15241 cgattttagt gaacggcaaa ccaatcggca gccaaaaact taccgctaaa aaagccaatg
    15301 gcgacaaatt aacgttccaa attccgagcg atttaaacgt aaaaggggat ttttcagtta
    15361 ccgttgcctt tgatttagtt ttaacaaata actattgtgg ctttattgca gattctgaaa
    15421 tcccgtgggc gtatatcacc ccagaatcaa aaatcaattt aaacacaagc gaagaaacag
    15481 acttgctttt tgaacaatat ccgtacccat ttattgcaaa tggtgacttt aacaatgcag
    15541 ttgtcgttgt tcctgataaa ttaacgacag aagatacaga ttcattagca aatattttca
    15601 atctgttagg ccgcttccat gatggaaata ggggagactt gactgccgta catgccgcca
    15661 actggaaaaa accaaaagaa ggatcgaata ttattgcagt tggtacaatg aataataatc
    15721 cagtaattaa aaacgccaat gacgacctat atttccagta caacaaaaca ggcgattact
    15781 tcctttccaa tgaaaaaatc tcgattgaaa aaaattacgg caaacaactt ggtagtgtgc
    15841 agttaattac atcagatggc gtcccaattc tggcagttac tggtccaggt gccaaacaaa
    15901 cagaactcgg atcggattta atcgcaacaa aagccaacct agctaaaatt tacggagatg
    15961 gcgccattgt tgatactgat aacacgatac attcctaccg attcaaaaaa gcagcagata
    16021 cacaggaaga aagctttggg tcaaaaatca gtaataacaa agaagtcact gtgttcggag
    16081 cattcgcgct tctaaccgtc gttatcttag ttgtcgctgt cctactaatc ttgcgtaaat
    16141 atcgccggag ccggaagtga gggagaaata aaaaatgaaa aaaataacga ataacttatt
    16201 tgcagatatc ggctttttat ttttcatctt gctttgtttc atcacaattg gctttatgat
    16261 caatacgccg gatgaatatt tgcgaaacat tattttatta aatatcacct ttttacttgt
    16321 gattatcacc tattttacga acttaacgct tggtttgatt ttaaatgtcc tctacatttt
    16381 tatttatgca acttatatta tttatgaaat tgtcgcaaat caaatcgcct atggttttgg
    16441 tagctacttc tggcttataa tcacgcccct tttcacagta gctagtgcga tgtttacaag
    16501 aaatacgtca aggcttcaag aagagaacac gaaaatcaaa cagcaaaatc tatatttagg
    16561 aacgattgac caagaaactt tgcttaaaaa tatcgtttca ttccaaaatg acgagcgaat
    16621 tttttccagt atttcgcgcc gttatgattt acctttatca ctgatggtta tcaaagtacg
    16681 tcactggcgc gagttgaaac gattccaaag cgaagaagag atgcgcctag cgttacaaga
    16741 tatttcagcg attttagaga cttgtattcg cacgagtgat gtcctttact tattagataa
    16801 agatgatgcg acttggggac tcttgttact aactgacgaa ccgggtggga aattagttgc
    16861 ggatcgaatt aaaagccgta tagctgaagc caacaccgaa gaatttgccg cgaagtaccg
    16921 tgtgaagcta gaacttcgaa ttggaacaag ccaatttgat agcgaaaaag tcaagacacc
    16981 acttgatttt atcgatttag caacaaaaga attagaatat gacgtgtaaa atagagagtt
    17041 accttctata attaggaggt aactctcatt tttgattgga ggaataccat gaacttagaa
    17101 gaaatagtcg attgtatgct attaaacgaa aatgacaaag aaattcagcg gacccaaaca
    17161 gagcaccgca tcaaactagt tgatttttgg caagtgaaaa atggggaccg agtgctggag
    17221 gttggttgtg ggcaaggcga tacgacagcc gtacttgcga atgcagttgg tgctagtggc
    17281 tttgtgcaag gtattgatat tgcaccgcgg acttatggtg ctccgtttac cattggcgat
    17341 gcgacagacc atttgcagaa atcaaagctt ggtgcgcaaa ttgattttaa gctggggaca
    17401 gatattttaa acggtgatat cacttttcca gaagatgctt ttgatgtagc cgttttatcg
    17461 catgcttcgt ggtattttag ttccaaaagt gagctcacga tgatgctcga attactaagc
    17521 aagtgggcga aacgcgtttg ttatgcggaa tgggatacga gaattacgga tgtaaaacaa
    17581 acgtcgcata tgttagctgt gctcacccaa tcatcttatg aagctttcaa acaagacacg
    17641 cagtccaata tccgaacatt cattacacca atagatatgc aagaaatcat ccaagagcat
    17701 aactggaaaa tgggcgcgga aacaagtatc ttctcagaaa aaatgcaaga tagccgatgg
    17761 gaaattggtt atgtaaaaga ttttatcaca aaagaattag aagcagattt aggtttgcca
    17821 gaaaaattta aagcattttt actcagtcaa agtaaattaa ttacgcttga aaatagtttg
    17881 ccaatggcgt catactgcac ttcttggcag gtgaagtaat tttgctttct ttttcacaag
    17941 atttagattt tttatgctat aatggaacgt attaacgaac taaaggagtg ttgaatgtga
    18001 gagctgtact tactgtaatt ggaaaagata atgtgggtat tgtcgcaggt gttagtaata
    18061 aattagctga actgaatatc aatattgtgg atgtatccca aacgattatg gatggttatt
    18121 ttacgatgat gatgatgtgc gatattagcc agatcacgaa agaatttgat gaagtaaagg
    18181 cagaattagc cggtaaaggc gaggacctcc aagtaaaaat acatattcag cgggaagaaa
    18241 ttttcaacgc aatgcacaaa ctttaggatg ggggcgatgc tagtatggaa acaaatcaaa
    18301 ttttagaaac gatacgaatg attgaagaag aaaaattgga catccggacg attacaatgg
    18361 gaatttcttt gctagattgt atggacggcg acggcgaagt ggctcgaaag aaaatctatc
    18421 aaaaaatcgt taccaaagcg cgtaatttag ttgcagttgg tgaagcgatt gaatctgagt
    18481 ttggcattcc aattattaat aaacgaattt ctgtcactcc gattgcgatt atcgctggat
    18541 caagcgcaga tactgactac gtagaatttg cgaaaacact tgatgctgct gcaaaagaag
    18601 ttggcgtgaa ttttattggg ggctattccg cactcgttca aaaaggctac acgaaaggtg
    18661 acgaaatcct gattcgctcg attccgcaag cactcgcaca aacggaacgc gtatgctcat
    18721 cggtcaatgt tggctcgacg cgaacgggaa tcaatatgga tgctgtccgc caaatgggcg
    18781 aggtaatcaa agaaacggct gacttaacag ccgatacgca aggcctaggt tgcgcgaaac
    18841 ttgttgtatt tgccaatgct gtcgaggata atccttttat ggccggagca ttccatggtg
    18901 ttggtgaagc ggactgcgtt atcaatgttg gtgtcagcgg cccaggtgtg gtgaaacgtg
    18961 ctattgaaaa agtaaaaggc gaaccgtttg atatcgttgc tgaaacagtc aaacaaacag
    19021 cgtttaaaat cactaggatg ggtcaactcg ttggccaagt cgcttccgaa aaactcggcg
    19081 ttccttttgg gattgtcgat ttatcacttg caccaactcc agcgattggt gattcggtcg
    19141 cacacatttt ggaagagatg ggactagaaa tggttggaac acatggcacg acagccgcac
    19201 tcgcactttt aaatgacgca gtgaaaaaag gcggcgtaat ggcttgtgga catgtcggtg
    19261 gtttatcagg cgcattcatt cctgtttctg aggatgcggg tatgattgaa gctgtgcagc
    19321 aaggggcgct caacctcgaa aaattagaag caatgacagc aatttgttcg gttggtctgg
    19381 atatgattgc cgtaccaggt gacacaactg ccgaaacatt agcagcaatg attgcggatg
    19441 aagcggctat tggcgtcatt aacaataaaa caactgctgt ccgagtgatt ccagcaagtg
    19501 gcaccaaagt tggcgacatg gtcgaattcg gcggcttact tggcacggca ccagtaatgc
    19561 cagtaaacgg aaaatcgtct gtggacttca ttgctcgcgg cggtcgaatc ccagcaccaa
    19621 ttcattcttt taaaaactaa cgaaaaaggt ttcctccaaa tttgcgagga aaccttttat
    19681 tatgtcgttt ttcgttcaac taaatgaaaa tctaaatcaa gcagtggcaa attgctacca
    19741 aataattgat tcataatgag cgtaaaagca ttttcagctt gcaaatttac cgggtagtga
    19801 atcgttgtga tatcaagcaa atgcgcgatt tccatattat cgaacccaca aatcgcaaaa
    19861 tcttccggga cactgtaacc aagccgtctt gcttccgtca aaagcccagc cgcaaaataa
    19921 tcattcggtg tcaaaaaggc gtcaggttta tgctctgttt ccgcaaacca atgcgcaatc
    19981 ttttccccgt cttgccgaga accttgcccg taaaactgtc taaactcatg cggatcaagc
    20041 tcataacgcg cacaaaagtc tttaaaagca agcatgcgac tttgcgtatt gagcccggtc
    20101 gtattcccgt aaacattcac gaattttcga tatccttttg catataaatg ttctagtgca
    20161 agcgtatatc catcatattg gttcataaat acagaaggga ttttttcact ttcgacacgt
    20221 tgccaagtga caatcgggcc atatttggtg taatgttcaa tcgttttcca atcatttgac
    20281 cgaatgacca ggacgagcgc atcaatttgt ttttggcgca gcatctctaa ggcctctagt
    20341 tctttatctg gatcaatccg cgtcataaac aatgtgacgt tataaccatg ctcttgcgct
    20401 atcatcgtaa aacttttcaa aaatacattc agagaatctg taaagctagg aataaccatg
    20461 ccaattagct tcgttgcccc ttttttcaga gacacggcgt ttatattcgg aacataatct
    20521 aactgatcaa ttattgtctg aacacgtttt ctggtttcat cgcttacata gtcgcgctta
    20581 ttaatcactc gggaaaccgt tgctgatgaa acacccgcta gtttcgcgat ttcttgtata
    20641 tttgccaatt aaaaaacacc tcgatttctc gtagctctct aattagtata ccaaaaaatc
    20701 ccgccaaata gccagtttgg ataaatttaa aataagtgct tgacctgtaa tgcattacat
    20761 gaattatgat gaatgagaag aaaagaaaac gctttaaaat tctaggaggt aagtatatta
    20821 tgaaaaaagg tgtaaaaatc gttacaattg gtgggggttc cagttacaca ccagaacttg
    20881 ttgaaggatt tattaaacgc tatcatgaac ttccaatcag agaactttgg ctagtagata
    20941 ttgaagctgg tcgtgaaaaa ttagaaatcg ttggtaatat ggcaaaacgt atggtcaaag
    21001 cagcaaacat tgactgcgaa gtacatttaa cacttgaccg tcgtgaagct ctaaaagatg
    21061 cagattttgt tacaacacaa tttcgtgttg gtttattaga cgctcgtatt aaagatgaaa
    21121 gaattccact tagccacggc atcatcggtc aagaaacaaa cggagcgggc ggaatgttta
    21181 aagctttccg tacgattcct gtcattcttg gtatcgttga agatatgcgc gaactttgcc
    21241 cagatgcttg gttaatcaac ttcacaaacc cagcaggtat ggtaacagaa gccgttcttc
    21301 gttacggcaa ctgggataaa gttatcggtc tttgtaacgt gccaatcgga gcagtgaaaa
    21361 gcgcatccga cgttttagaa aaaccagaag aagacttatt cttcaaattt gctggaatca
    21421 accacttgca ctggcaccgc gtattcgaca aagatggtac cgaattaaca gaaaaagtta
    21481 tcgacggcct ttatgcacca gatgctaacc caggaaaagt cgttgaaaac attaaaaaca
    21541 tgcgcttctt atatgagcaa gttaaacatc taaaaatgct tccttgtcca tatcaccgtt
    21601 actactacat gacggatgca atgcttgaag aagaactggc atctttcaaa aacgaaggta
    21661 ctcgcggaga agtcgtgaaa aaactagaag acagcttatt cgaattatat aaagacccaa
    21721 atcttgatta caaaccagaa gaattatcca aacgaggcgg cgcacattac agtgatgcag
    21781 catgtgaaat catcaattcc atttacaaca acaaaggtac cgtaatggta gtatctactc
    21841 gtaataacgg cgcaattgat gacgttcctt acgatagtgc tgtagaaatc acaagtgtta
    21901 tccgtgcgca tggcgcagaa ccaatcaact tcggtaaatt cccaccagca caacgcggct
    21961 tactacaagt aatgaaatcc atggaagaat tgactatcga agcagcagta acaggcgatt
    22021 acgcaactgc actacaagca ttcacttcta acccactcgt tccaagcggc gacttagcaa
    22081 aaacaattct agatgaaatg ctagaagcac acaaagagtt tttaccacaa ttcgctaaat
    22141 aattcgcaag tgatccctag aaaataggga tcactttttt tgtgagttgt tttagcgagc
    22201 attttttcaa gtttcctgta aaatagaaaa aaggaggtgt gcttgatgca aacaaatctt
    22261 gaaagaataa aaaaacacat agaaaaatta gatacttata cagcaactcc gggtcaggga
    22321 acaactcggt ttacatatag caaagaagac ctcgacgcgc gcaactattt aaaacaagaa
    22381 atggctaaag taggccttgc tgtttcagaa gatgcgattg gaaatatcta cggacgacta
    22441 gaaggcgaaa atccaaattt accagcagta attgtcggct ctcattttga ctctgtacca
    22501 aatggtggtg cttttgatgg accagctggc gtcattaccg gacttgaagt agccactgtt
    22561 ttctatgaac aacaaattaa accacatttt ccgcttgaaa ttattgcgat ggtggaagaa
    22621 gaaggcgctc gttttggcgc tggcctcctt gcttcacgta caattactgg caaagttacc
    22681 aaagaaatgc tccatgaaat gaaagatata gatggaatta cagccgcaga agccatggca
    22741 aaagtaggat ttgatgcaaa tcaagtagtt acagctatcc gcacgaaaga atccgttaaa
    22801 gcatttatcg aactacacat tgagcaagga ccagtcctag aaaatgccaa tgaagatgtg
    22861 gcgctagtag atacagtagt cggtttaaca gaaataaaag taacagtaaa aggacaagcc
    22921 ggccatgcag gcacaacccc aatgcttgac cgaaaagatg cgctgatcac agctgtcgaa
    22981 attttaggtc aactaccaga actagctatc caagaaggcg gcggaactgt attaacagtg
    23041 ggcaaactca acgtctatcc aaatggcgca aacgttattc cagataaagt cgtttttacc
    23101 gtagatatcc gagcaaaaga cgaaattcac gtccaaaata cattagcaaa aacaaaagaa
    23161 attatccaat ccgcagagaa aaacggcatc acttgcgaaa tagaagatat gctatacgaa
    23221 ccgccgaccc atttatcaaa agagattcat caagcattga ctgaaagtgc cgaccaactc
    23281 ggcttaaaat accgaacaat ggttagcggg gcgggacacg atgcaatgat ttttgcaggt
    23341 ttaaccgaag taggcttgat ttttgtccct agccacaacg gcataagtca tgccccagaa
    23401 gaatggaccg attacgacaa gctacaaaaa ggaatcgaag tcgtactgga aacagtaaaa
    23461 aaatggacgg aggaaagcgc gaatgaatca gaaaataaaa caagcagttt taaataatga
    23521 agaagcaatg attgccttcc gccgtgattt gcacatgcat cccgaactcc aatggcagga
    23581 atttagaact accgacaaag ttgccaaaga attggacaaa ctgggcattc cttaccgccg
    23641 cacggaacca accggattaa tcgcggaact caaaggcggg aaatcaggga aaacagttgc
    23701 cttgcgtgcc gatatggacg cactcccagt ccaagaacta aaccaagacc tcccatataa
    23761 atccacagaa gacggcaaaa tgcatgcctg tggtcatgat gctcatacag cgatgctaat
    23821 aaccgcggca aaagcactcg tagaaataaa agacgaacta cccggaacag tgcgcttcat
    23881 ttttcaacct tcagaagaaa ttgcagaggg tgcgaaagct atgatagccc aaggagcgat
    23941 ggaaggcgtg gaccacgtgt ttgggattca tatctggtcc caaactccaa gtggaaagat
    24001 atcgtgcgta gtcggctcca cattcgcctc cgcagatatt atccaaatcg acttcaaagg
    24061 acaaggtggt cacggagcaa tgccgcatga cacaatcgac gctgctgtaa ttgcttcctc
    24121 attcgttatg aacctccaat ccatcgtatc acgcgaaaca gatccacttg atccagtcgt
    24181 agtaactatc ggcaaaatgg atgtcggcac tcgctacaat gttatcgcag agaatgcccg
    24241 tttggaagga acgcttcgtt gcttcaacaa cataacacgc gccaaagtcg caaaatcaat
    24301 tgaacactac gccaaacaaa ccgccgctat ctacggtggc aaggcagaaa tgatatacaa
    24361 acaaggcaca caaccagtaa tcaacgacga aaaaagcgca ctactcgtcc aagaaacaat
    24421 cacagaatca ttcggcgaag agatgcttta ctttgaacgt ccaaccacgg gcggcgaaga
    24481 cttcagctat tttcaagatg aagctcccgg aagtttcgca ctcgttggct gcggcaatcc
    24541 agaaaaagac accgaatggg cgcatcacca tggccgattt aatattgacg aaagtgtcat
    24601 gaaaaatggc gccgagctat atgcccagtt tgcgtataat tttttaaatc aaaattaata
    24661 aaaaaagcct ccagctaatt caattaactg gaggcttttc gcatgctatt gtttttctac
    24721 tacatgtacg tcttcaaaag aaccgtattt tgtccaccaa ggaacggcac cttcatcaag
    24781 caatttatca agagaagtaa tgttttcttt cccttgcgta cgaagccatt cgcgtaaagc
    24841 gtcatcgcct tgtttgccgt acacttcaat accatcagcc caagttgcac gaccacaaag
    24901 aacgccgcta tactgcacgt tatgttggtt cgcaaattgg attgttttgt ggaacatttc
    24961 agaagttaca ccagcactaa gataaataaa tggaagtggg cttaagtcag agcattcttc
    25021 aaaatgacga gctgcttcgt cttgcgtata agcgacttca ccttccgcaa aaccttccac
    25081 atatttaaag ttaactggaa cttcaagttt aagtacatct acaccgtaac gaggtttaga
    25141 gaattcttta attgaagctt ttacttttgc tggtttcaat ttagcatatt ctaaagaacc
    25201 agaatcagta actgttgcat cataagtaat tggctctaag aaaaatggaa tatcaactgc
    25261 gcgacattca gcaccgattc tttctaaaaa ggcatatttg atttcattaa tttcagctgg
    25321 ctcatctgga tcataataaa cgagaatttt aacagcatct ccgccatttt ctttaatacg
    25381 aagtgccgat aaatcttcaa ttaaatcagg aagtttaccg ggagttgttg cgtcatatcc
    25441 tgttttttca taagaagtta aaagtccgct accttcgtgg cgagctttga ttgctggagt
    25501 accatattct aaatcaagca aaatcgcaga agcataaggt gtaagttctt cagaaacaag
    25561 ttgtttgaag tcttccacat cttttttgtt ttctgttcct tttgcttgtt ggatcatttt
    25621 tttgagtgag ccacgttggt caatggcaag cgctgcaatg acaccttttt cgttggagag
    25681 tctttgtaaa ccatcaaatt taccttttgt tatttgtacc atttttatct agtctccttt
    25741 atagcaattt gtcgttgctt aatcaattta tccttcctta ttataccact gaaaagtttt
    25801 tttaaaacat aggtatattt ccgtattgat ttatctgaag taataaatta cgatatatgt
    25861 ggagtgttag gtattgatag aaatttggga tattttctat taatacattc tcttttggga
    25921 aagtcattta acgattagac tagaccagga gtgatgaaat gaatcgacgc gaaagacgta
    25981 aacacaaaag acgcaagaac atgattatcg tgttgagtac tgtatttcta ctgtttattg
    26041 ccacaagttg gatgatatac gaattcaaaa gtaaacaaga gcaaacagta tccgcaccta
    26101 ctaagaagaa agcagcaacc gcaacaaacc caccggaaaa tgcagcaact aatgagcctg
    26161 aagaaacgaa agagcctgaa ccagtagaag aaaagccaaa ggaaacaatt gtaaaaaatc
    26221 aagaaattga taactattta caaaaaattg gttttagtgg ttcggcactg gttgttcgcg
    26281 atggaaaaac tatcatacaa aaagggtata tgtatgcaaa tcgtgatgaa aaagtattga
    26341 atacaccaga tactttgttt tatattggct cttctcaaaa agcaatcata gcaacggcac
    26401 ttttacaatt agaagaaaaa ggtaaaataa atacgaatga tccaatttcg aagtatatac
    26461 ctgactttcc taatggtaat aagattttag tgaagaactt tatgaatcat acatctggta
    26521 tagttggacg accaaaatta acgagtaata tgacaccgga tcaaattatt aaagctattg
    26581 aaaagcgagg aattaaatca caacctggga aatgggatta tttggatgct aattatgctg
    26641 tagtaggtta tcttgtagaa aaagttagtg ggcaaccttt agctacctat cttcaagaaa
    26701 atatatttac ccctgcagga atgaagcata caggatacta tcaaaaagat gttgatgggg
    26761 gaaaaaacgt atcaacaggc tataaaattg atgaaaatgg agtctttcaa agtccaaagc
    26821 ttgcagactt aacgaaatta tatggtgcag gggacattag tatgtctaca acggatatgt
    26881 atttgtttga caaagcattg atggataaaa aattgatttc tgaagcaagt ttgaaaaaaa
    26941 tgttcacatc aggaagcaaa tcaacttatg gaatgggatt ctatgtggat tcaggtagtt
    27001 ataatagtca cggagttgtg accggttggg acgtatctaa tagtgtcagt catacaggaa
    27061 gaacttatgt tatattattc tccaacgtcc aaaaccacat tgcttcattc ggaaaagtga
    27121 ataatgatat ttatgg
//
LOCUS       DABQVC010000012        26630 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.012,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000012 DABQVC010000000
VERSION     DABQVC010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 26630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26630
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.012"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            123..1010
                     /locus_tag="IBJ56_000363"
     CDS             123..1010
                     /locus_tag="IBJ56_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416647.1"
                     /translation="MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFS
                     TMTGIYLPDEGDVFLGEESIFKHPEVKQQLFFLEDNMNHFNTYSVQTVVKIYRQIYTT
                     FDEAFFNELMQRFELPMKAKLMSFSKGRKALFFIILAVSLNVRFLLLDEPMDGLDIII
                     KKQILATIKDTVKKRGTSVVIASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAV
                     KIQVAFKTKKIPDFVKNNAQLLYRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSIS
                     IEDIFTVHLANDKIDYYEI"
     gene            1037..2167
                     /locus_tag="IBJ56_000364"
     CDS             1037..2167
                     /locus_tag="IBJ56_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HAM3416648.1"
                     /translation="MFNRGLWYREWRNMRWMLLGVVILFFLGITLGLMSDADRWNSQK
                     EYYESSEFLKQQKENPEFKTSDEEMKASLTVAYLAVPMYTNFVQDEFVDYMPFMFYFQ
                     VEMFFTLIKVSVFILGVLAVIFERYTRANRFTASLPYKRTHIVGVKMMMGIATIGLSY
                     LISMGIGLTYFMSHVPKEYIQLDAPKFWVDIVGGLFTYLLIFLVAILIGLLIGSPIAA
                     AFVAFGVMLLPSVLNPTLDNMYNFIWPHGGDKGMSKLLRFEDYVNIFSPFSFESASFG
                     AVIFSVILSVLMVVAILILYKKQHIERSGYLFAFSWVKWPFLVLFSLFVGMTAANLAV
                     TDTELGFVGYLAWGIGATIGSFILALYILNKMRGLFQLSKTN"
     gene            2238..2900
                     /locus_tag="IBJ56_000365"
     CDS             2238..2900
                     /locus_tag="IBJ56_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 family protein"
                     /protein_id="HAM3416649.1"
                     /translation="MTTETETIKPQLAELKANLTKRNLQYVMEVEKHLRETHYSAEQQ
                     EIIVYEMSEKILAEQKKGITARKLFNLTPTEYVVSLDVKAATVEQNTDKWWLVLDGGL
                     LVLGAMMLISGISAYFQKNAQTLGIIVLLITAVVGGFAMLILRKYASNMRAGQKGGTI
                     KYLLVAVGVIAVWMFVMTIVQVTIPPNINVALSPIVNTVGGAIIIALRFYVKKKKNIP
                     SL"
     gene            3001..3735
                     /locus_tag="IBJ56_000366"
     CDS             3001..3735
                     /locus_tag="IBJ56_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAM3416650.1"
                     /translation="MFSYEVIRQFTETEHHLYRYIMDNRDKVMFMRVRELSEVTHVSP
                     ASIVRFTRKLGCEGFSEFKVKLKQEATREVKKKTADTVEVLEEFFERTMNRDYDHVLD
                     AAAEIINEADLVVFFGIGTSGILAEYGSRFFSNMKKRTFYIKDPFYPNPGEQFKNKAV
                     MIILSVSGETDQVLEQAQNMQQYGSRIISITNTSHNTLAGLSDVNIPYYVTQEMVDKT
                     NITTQIPVLFLLEAMAKKNYNQEQEE"
     gene            complement(3775..4083)
                     /locus_tag="IBJ56_000367"
     CDS             complement(3775..4083)
                     /locus_tag="IBJ56_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HAM3416651.1"
                     /translation="MNEMETVIFGMISQVGSARSSYLEGLRAAREGNFEEAEAKLQEG
                     SETLANGHHEHHKLIQKEASGEKVEIQLLLIHAEDLLITTETLREVVTEFVHVYKKIS
                     "
     gene            complement(4076..4960)
                     /locus_tag="IBJ56_000368"
     CDS             complement(4076..4960)
                     /locus_tag="IBJ56_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAM3416652.1"
                     /translation="MKIAAFDIGGTALKMGVVLPHGEIILTKSAEIIASDGDQILAEM
                     KLFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETGIPVAIEN
                     DANCALLAEKWLGKGQNLDDFLCLTIGTGIGGGIFSNGALVRGGRFRAGEFGYMFSER
                     PGAFRPGKYTLNETTTMLVLRRQYAELTGRPLEEITGEEIFAKYDGHDAVSERLITEF
                     YTGICTGLYNLIYLFDPTHIFIGGGITSRPTFITELKHHMESFGLRDTIIETATHKNQ
                     AGLLGAVYHFLQEENRHE"
     gene            complement(4972..6324)
                     /locus_tag="IBJ56_000369"
     CDS             complement(4972..6324)
                     /locus_tag="IBJ56_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3416653.1"
                     /translation="MSIMSKFEHGMERVLVPVANKLNSQRHIAAIRDAFILVFPLIMA
                     GSIITLINFAVLSPDGFIAKILFLGKIFPNLADAQAVFSPVMQGSTNIMAILIVFLVA
                     RNLAIFFKQDDLLCGLTSIGAFFIVYTPYTVVDNASYMTIKFLGAQGLFVAIIVAIIT
                     GEVFSRLARSPRLMIKMPDQVPPAVARSFKVLIPVIIITILFSVINYLITLIAPEGLN
                     DLVYTVIQAPLKDMGTNVFSVIIIGLVSNLLWVLGIHGPNTVAAIRDTIFTEPNLDNL
                     SYVAQHGSAWGAPYPATWAGLNDGFANYGGSGMTLGLLIAIFIASRRADYRDIAKLSL
                     APGIFNINEPVIFGLPIVLNPIMVIPFIITPAINTLIGYFFISTKLIPPVAYQVPWTT
                     PGPLIPFLGTGGNWLALLVGLLCLAVATVIYLPFVLVSNKIAASDAAMDKNATASTEQ
                     "
     gene            complement(6357..6659)
                     /locus_tag="IBJ56_000370"
     CDS             complement(6357..6659)
                     /locus_tag="IBJ56_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3416654.1"
                     /translation="MKKILLVCAAGMSTSLLVTKMKAHATSIGEEIEIEALPVSEASS
                     VVDKMDIVMLGPQVRYQKPQVDELVQGRIPVIVIDMKDYGMLNGKAVLEKAFAEIG"
     gene            complement(6703..8157)
                     /locus_tag="IBJ56_000371"
     CDS             complement(6703..8157)
                     /locus_tag="IBJ56_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HAM3416655.1"
                     /translation="MEHNKLKPFPKDFLWGSASAAYQVEGAWDEDGKGPSVWDEFVRI
                     PGTTFKETNGDVAVDNYHRYKEDVALMAEQGLKAYRFSVAWSRVIPHGNGEVNEAGLK
                     FYDNLIDELLSYGIEPVVTLYHWDIPQGLQDEYGGWESRKVVEDFTNYAALLFKRFNG
                     RVKYWVTLNEQNVFISHGYKLAYHPPGVSDDKRMFAANHNANLANASAIAKFRELGTS
                     GKIGPSFAYGPSYSIDANPANVLASENSEEFNAHFWMDVYTWGEYPTATWNWLEEHGL
                     APEILPGDTELLKKGKPDFMGVNYYRSMTHAFNGKDGVGSGKMNTTGEKGTSEETGVP
                     GLYKNTNNPYLEKTNWDWDIDPTGLRIGLRRITNRYKLPIMITENGLGEYDSLTEDHK
                     IHDEYRIEYIRAHALAIQEAITDGVEMLGYCTWSFTDLLSWLNGYQKRYGFVYVDRDE
                     NDEKELKRYKKDSFYWYKKTIEANGANLVEEQGK"
     gene            complement(8185..8493)
                     /locus_tag="IBJ56_000372"
     CDS             complement(8185..8493)
                     /locus_tag="IBJ56_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416656.1"
                     /translation="MGRLRQCNCNTGKNCTDNIQKFSYTSSRIQKKHVISPLFINTYR
                     IRDTSPNVNCSSNHMHETQRFSSETYTIDMKHEPKAPKSIYQLVETVYINKASKTKTD
                     "
     gene            8675..10285
                     /locus_tag="IBJ56_000373"
     CDS             8675..10285
                     /locus_tag="IBJ56_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HAM3416657.1"
                     /translation="MTIVAMNDVVKSFTGDIILEKVSLQLEEGERVGLIGRNGEGKST
                     ILKILKGTEGVDSGIVTSKKGAKIGLLEQLSTVDPNIIVEQYLRTSFGELEELEKELR
                     ALEGEMATNSSEKLMNRYGDKMALFGELGGYEMDANLNKVVNGLGIGLLLSQRWGDLS
                     GGEKTKAALAHLLLQKTDLLLLDEPTNHLDLMAVEWLTAFLQHYSGTVLVVSHDRYFL
                     DEVVGKMVELENRELIVYHTNFSGYLKEREERLLREFQDYKDQQKKIKKMQQAIKRLR
                     QWAMQANPPNDAMFRRAKNMERALERMEKVKRPVLTQKQMQLQFDEAGRSGQEVVVME
                     NLSKSFSEKAIVQDVSLQIRQGERVAIIGENGAGKSTLLKIMEGKVVPDVGMIKVGAS
                     VKIASLSQQMEELNEKLTVLDAFRDKVAVTEGEARQMLAGFMFYGEMVFRKVGNISGG
                     ERMRLRLAQFINMPVNTLILDEPTNHLDIASREILEEAIRAFSGTIITVSHDRYFIDQ
                     LCSKVIWLENKQLTVYEGNYSYATSKRR"
     gene            10343..10873
                     /locus_tag="IBJ56_000374"
     CDS             10343..10873
                     /locus_tag="IBJ56_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose-binding protein"
                     /protein_id="HAM3416658.1"
                     /translation="MEITVVKGDITEQDVDVIVNAANPGLLGGGGVDGAIHQAAGPDL
                     LKECQEVINRIGTCPAGEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKA
                     LDLAAGKELTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFD
                     EENLKLYNKLINSEVV"
     gene            11161..12627
                     /gene="guaB"
                     /locus_tag="IBJ56_000375"
     CDS             11161..12627
                     /gene="guaB"
                     /locus_tag="IBJ56_000375"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HAM3416659.1"
                     /translation="MWETKFAKEGLTFDDVLLVPAKSDVLPNDVDLSVEMAPSLKLNV
                     PIWSAGMDTITEAKMAIAIARQGGIGVVHKNMSIEQQAEEIEKVKRSESGVIIDPFYL
                     TPDHQVFAAEHLMGKYRISGVPIVNNEKERKLVGILTNRDLRFISDYSTVIKDVMTKE
                     NLVTAPVGTTLKQAEQILQKHRIEKLPLVDEAGILKGLITIKDIEKVIEFPNSAKDKH
                     GRLLAAAAVGITNDTFVRVEKLIEAGVDAIVIDTAHGHSAGVINKISEIRQTFKDVVI
                     VAGNVATAEGARALFEVGVDIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATVAREF
                     GKTIIADGGIKYSGDIVKALAAGGNAVMLGSMLAGTDESPGETEIFQGRQFKTYRGMG
                     SLAAMEHGSKDRYFQADAKKLVPEGIEGRVPYKGSVADIIFQLVGGIRSGMGYTGSPD
                     LRHLREEAAFVRMTGAGLRESHPHDIQITKEAPNYSIS"
     gene            12788..14560
                     /gene="recQ"
                     /locus_tag="IBJ56_000376"
     CDS             12788..14560
                     /gene="recQ"
                     /locus_tag="IBJ56_000376"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HAM3416660.1"
                     /translation="MIEQARAILQQNFGYQDFRNGQVDVISKLCAGEDTLAIMPTGGG
                     KSLCYQIPALLFDGLTIVVSPLISLMKDQVDALVSEGIAATFINSTLTNREIDIRLDA
                     AFSGELKMLYIAPERIETPGFQRLIEQVPISLFAIDEAHCISQWGHDFRPSYLTLCDS
                     LDKMTRRPLVIALTATATQAVSDDICRLLKIGADSVVKTGFSRDNLAFQVVKGQDKDK
                     YLIDYLTKNVTESGIIYASTRKEVERLHTFLLKKGVESGMYHGGMTDLARKDWQEKFL
                     YDDIRVIVATNAFGMGINKSNVRFVIHYNIPRNIEAYYQEAGRAGRDGVPSDCILLFS
                     PQDSRIQQFLIEQSEMDDERKQNEFAKLRQMTGYGYTEICLQKYIVQYFGDDEENCEK
                     CSNCLDTREATDVTILAQQVFSCIKRMGERFGKVLIAKVLTGSADQKVKDWRFDELST
                     YGLMKDASQKDVLQLIDYLTAEKYLQPTDSQFPSLKLTDRAVSVLRGELKVERKQAKR
                     AEKVKIDVNSDLFEKLREVRRELAAKHKVPPYIIFSDETLREMCAYMPQTEDALLEVK
                     GIGAMKRDKYGAEFLAVLQQEASK"
     gene            14584..16737
                     /locus_tag="IBJ56_000377"
     CDS             14584..16737
                     /locus_tag="IBJ56_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HAM3416661.1"
                     /translation="MTKTLVLAEKPSVGKDIGRVLGAKQGKNGYLEGGKYVVTWALGH
                     LVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPIKQTRKQYETVKKLMNRTDITTIVI
                     ATDAGREGELVARWIIDYAKIKKPLKRLWISSVTDKAIREGFEHLKPGKAYENLYHSA
                     VARSEADWVVGINATRALTTKYNAQLSCGRVQTPTLAMIQHREEEIRNFKPREYYGIT
                     ALTEQESFTWNNGQTFDKALAEKLVKSLQGENAVITDVSMKEKKNFSPGLYDLTELQR
                     DANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRFISTDIVPTLKERLAACGVGENA
                     KAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPVSLGDLSDKERKIYDLVVKRFLA
                     VLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIYGESREPDQLTKMKKGDTIPV
                     KRINLETGKTKPPARFNEATLLSAMENPSKYMETTNKALAKTLGETGGLGTVATRADI
                     IEKLFNSFSLEKQGKDIHITSKGRQLLELVPEDLKSPELTARWEQKLSKIAKGELDYR
                     KFTEEMRDYAKKAVTEIKQNDKKFRHDNITSQKCPDCGKPMLKVKGKRGTMLVCQDRE
                     CGHRESVSRTTNARCPNCHKRMEMRGEGDKQIFVCVCGHREKLSAFQQRRDKQKNKNV
                     SKTDVAKFMKKQNKQEDEPFNNPMAEALAKLKLDK"
     gene            16846..18513
                     /locus_tag="IBJ56_000378"
     CDS             16846..18513
                     /locus_tag="IBJ56_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HAM3416662.1"
                     /translation="MKHNQLIIETDVPAEMRDGVTLYADIYRPADAGEYPVLLTRLPY
                     SKSYGLHFIRPNILAEQGYVVIVQDVRGRYTSEGDFVPYIAEVDDGYDTIEWAANLPY
                     ANGNVGMFGLSYYGYTQILAAISGNKHLKAIAPIMAQNSMTDVFNDHDGALELGMWET
                     WNLESMLPNMLARTYKTQDELEAAVSLLMKNLDNLDALYQFKPYKDWPAIGQNEMPYF
                     SELLNYEPTHNHWQKIDAKSNYDKIKVPGLHVAGWYDCFLDKTIANFQNGHLRGLGDK
                     LIIGPWTHANFTQMIGDRDFGMAATKWGEANMHARHIEWFNHWLKKEPLPASAPVNYF
                     VMGLNDWKTAENWPPQNANMTPLYFKNEKVSAEFTPPTTSSEAKFSYDPENPVPSNGG
                     GTLHKALHADGPRDQQQIELREDVLCYSTEPLKEAIEVTGPIQVKLWAKSDAPNTDFT
                     AKLVDVFPDGTAFNLADGIIRAAKQHGDNVQNNINEYTIDLWATSNLFQKGHQIRVEI
                     SSSNFPRFDPNPNTGDNFINSTESQIANQTIYHSSEFPSHILLPIVR"
     gene            18692..20029
                     /locus_tag="IBJ56_000379"
     CDS             18692..20029
                     /locus_tag="IBJ56_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HAM3416663.1"
                     /translation="MKNIIKKTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIA
                     IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQ
                     DTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADEL
                     NLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTAST
                     TKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRV
                     ITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQKAGSKVKNPSTIAVDKGK
                     EDTVGLVTKDAVKLVVPKNGNEPKLNTKVTMKEKTIEAPVKKGTEVGKMEVSLKDGDK
                     LGYVDGKQTETIDVLTASDVEKANWFMLSTQAVGSFFTGIGNYVSDGVKGWFN"
     gene            complement(20110..21057)
                     /locus_tag="IBJ56_000380"
     CDS             complement(20110..21057)
                     /locus_tag="IBJ56_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HAM3416664.1"
                     /translation="MGILNEKVAVLLPCYNEELTIGKVIDDFKKELPNADIYVYDNNS
                     KDKTFEIAKDHGAIVRKEMRQGKGNVVRSMFADIDADYYLMVDGDDTYPAEYCHEILE
                     VLRNKEANMVIGDRLSNGTYTEENKRNFHDFGNSLVRNTINRIFKSNLRDIMTGYRGF
                     DRYFVKTMPVLSPGFEIETEMSIHALENRFLVKEIEIDYRDRPEGSESKLNTFSDGFK
                     VIMTIVRLFKNSRPFLFFNLLASLFVLVGVLVGLPVIIQFAQIGLVLKFPSALLATGL
                     IIMGMLFFICGLILDTIAHRSRQSYFLELVKYRERNPLN"
     gene            complement(21068..22921)
                     /locus_tag="IBJ56_000381"
     CDS             complement(21068..22921)
                     /locus_tag="IBJ56_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416665.1"
                     /translation="MLNKKRVIVGVLLLLLSLISISYYSETFKLTLSWLLFAVVLTVL
                     YFRQEKNFQFQWSTLITSLIISLFWMASSFNGGPYGGNFVFNSIILAGTFLVITIFVL
                     LLLLEMRTEYKARPNRKVKWPFFALFTSIPFVVWMISFLAYYPAKMTFDSYYQWGMAH
                     GIRQYSQWHPLLHTLWIETTSAIYDSPSSYIFSQIIVVSLIVGFAIYTLVKMGAHIWI
                     GVCISIGYAIYPAAMFYSATAWKDFPFAAFILLFTVLILKIVQSNGMWLKNWWHLIAF
                     VLVAFVCINLRNNGMMIIIVSLLCLLIFMKNFRLIITGILVGTLGLNFLFGLVMTNGL
                     NAQPNPLNQALAIPSQQIGATFYNDGNFTPELKEYFTSILPEENWKKDYNPYTVDPIK
                     HDTKYNSSVIEDDFGLYIKNWFKLLTANFGTYVGAYLDQTAVIWQFYSPENYKVFFDT
                     SANIQDTRYDVRAFAKFFPEGLSEEEINKLGYEVYQNEYKNATGKDAVSYNEYKRRID
                     DSTNPLISISKAPSLKKITDSIYAKTTNEWQNYLLKGAIPLVLLIIAIAAVCLQRPKK
                     KLLIFAPVVMALITIAIAMPATDFRYSYSFIFTVPIVFFATKLKNYKENQF"
     gene            complement(23101..24873)
                     /locus_tag="IBJ56_000382"
     CDS             complement(23101..24873)
                     /locus_tag="IBJ56_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416666.1"
                     /translation="MKEFKQISRFFWHYLRGYKPQLFVILIAVVFATYLQVKAPQYIG
                     NAVQELGDYVVNLMQTGVDDKSDFIHIIWMLILCYVLLAAATFIQSIIMTGVAGKSTN
                     RMRIGLFRKMEKLSIRFFDSRNDGEMLSRFTSDLDNISNTLNQALIQVLSNVALMIGV
                     IIMMFQQNVELAFVTLISAPFAIIIATVIIRKARKFVDIQQDELGVLNGYIDEKISGQ
                     KIIITNGLEEETIDGFVKQNNIVKNATYKGQVYSGLLFPMMQGISLLNTAIVIFFGGW
                     LALNGDLERTAALGLIVMFVQYSQQFYMPLTQISSQYSLLQLAITGARRVSEVFAEEE
                     EVERENLQTIDGINKGVKLDHVDFAYDPAKPVLKDVSIDVSKGKMVALVGPTGSGKTT
                     VMNLLNRFYNVDGGAILFDDIDIRDIRLDSLRKQVGIVLQDSVLFTGTIRDNIVFGKP
                     EASDDEVINAAKQANIHDFIMNLEKGYETEISDENNIFSVGQKQLMSIARTIITNPSL
                     LILDEATSNVDTVTESRIQKAMDNVISGRTSFVIAHRLKTILDADHIVVLHQGEVIEQ
                     GNHDELMKAEGFYSELYHNQFVIE"
     gene            complement(24873..26594)
                     /locus_tag="IBJ56_000383"
     CDS             complement(24873..26594)
                     /locus_tag="IBJ56_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416667.1"
                     /translation="MKVLFHHLKKYKLQATLSTLFVVVMVISQLWQPKLLQQVLDAIM
                     KDDMDEISSIGALLIGIAAVGLIAGILNTILSAKVAQGVGADIRESSFRKIQTFSFSN
                     IEKLSTGNLVVRQTNDITQVQNLVMLSLQSLTRIPIMFIGAFILAMFTLPELWWVIIV
                     LVVLVVLIVVFTFGSMGKHFAIIQKLIDRVNSIAKENLAGMRVVKSFVQEDNEISRFT
                     TVSDKLTRHTIIVGTLFSVMIPAFMLVSNLAIVVSIFFVGDMAADNPEVIGAIASFMN
                     YLMQIMMAIIIGGMLMMMASRALISLKRITEVLETEPDITYNESAPEQDLEGTVEFRN
                     VSFKYDGDDTPALEDISFKASVGEMVGIVGATGSGKSTLAQLIPRLYDPTEGEVIIGG
                     TNLKDINKKTLRSTVSFVLQRAILFSGTIADNLRHGKKDATTEEMEHASKIAQAKEFI
                     DKQAKLYDAPVSERGNNFSGGQKQRLSITRGVIGSPKVLILDDSTSALDAKSEKLVKE
                     ALNKELDDTTTFIIAQKISSVIQADKILVLDKGKLVGVGSHKELLKENATYREIYDTQ
                     KGKEVTA"
BASE COUNT         8498 a         4771 c         5645 g         7716 t
ORIGIN      
        1 cgcaatatgt gaaattagta taatgattgg tttgtaactt tttatagcga attggtagaa
       61 aatttttaaa aatgtagaaa aaatattccg gagcttatat aatgagtgaa agaggtggaa
      121 taatgaaaat tcggaactta actaaaaaga tggacgataa cttggttttg aaggatgttt
      181 catttgattt aaaagcaggg gagattactg cattaattgg ccgcaatggc gttgggaaaa
      241 caactctatt ttcaacgatg acgggaattt atttgcctga tgagggcgat gttttcttag
      301 gtgaagagag tatttttaag cacccggaag tgaagcaaca gctgtttttc ttggaagata
      361 atatgaatca ttttaataca tatagtgtac agacggttgt taagatatat cgacaaattt
      421 atacgacttt tgatgaggct ttttttaatg aattaatgca gcgatttgaa ctgccaatga
      481 aggctaagtt aatgtctttt tcaaagggac ggaaagcctt attttttatt attttagctg
      541 tttcacttaa tgttcgattc ttgctgctag atgaaccgat ggatgggcta gatatcatta
      601 ttaaaaagca gattttagca acgataaagg acacggtgaa aaaacgagga acaagtgtag
      661 tgattgcgtc tcatcgtttg gaagaactcg aggctattgc ggatcgagtg attgttctaa
      721 agggcgcgag cgtggaactg gattattatt tagaagatat gcggaccgat gcggtgaaaa
      781 tacaagttgc atttaaaacg aaaaaaatac ctgattttgt gaaaaataac gcgcaattat
      841 tgtatcgtaa tgggcggatt tacacgcttc tagtgactga aaatgctagc agttttcttg
      901 ccgaattgcg tttagaagaa ccggttttgc tagaagaaat gtcgatctcg atagaagaca
      961 ttttcacggt gcatttagca aatgataaaa tagattatta cgagatttaa aacagacagg
     1021 agggacaagg ctaataatgt ttaatcgagg tttatggtac cgagaatggc gtaatatgag
     1081 atggatgctt ttgggtgttg tgatactatt tttcttagga attactttgg gactaatgtc
     1141 agacgcagat agatggaata gtcaaaaaga gtactacgaa tcaagtgagt ttttaaagca
     1201 acagaaagaa aatcctgaat ttaaaacttc tgatgaggaa atgaaagcta gtttgacagt
     1261 ggcgtattta gcggttccaa tgtatacaaa ttttgttcaa gatgagtttg tagattacat
     1321 gccatttatg ttttattttc aagtagaaat gttttttaca ttgattaagg tgagtgtttt
     1381 tattttaggg gttttggcag ttatttttga gcgctacaca agagcgaatc gttttacggc
     1441 atcattacca tataaacgga cgcacatagt tggggttaaa atgatgatgg gaatagcgac
     1501 cattgggctg agttatctta tctcgatggg aattgggttg acatacttca tgtcgcatgt
     1561 tccaaaagaa tatattcaat tagatgcacc aaaattttgg gtggatatag ttggtggatt
     1621 atttacttat ttacttatat ttttagtagc tattttaatt ggtttattga taggttcgcc
     1681 tattgctgcg gcttttgtgg catttggtgt gatgttactg ccgagcgtgt taaatcctac
     1741 tttagataac atgtataact ttatttggcc gcatggcgga gataaaggga tgtctaaact
     1801 gctacgattt gaggattatg tgaacatatt ttctccgttt tcgtttgagt ccgcctcgtt
     1861 tggggctgtg atttttagcg taatattaag tgtactcatg gttgttgcta ttttaatctt
     1921 atataagaag cagcatattg aacgaagtgg ttatttattt gcattttctt gggttaaatg
     1981 gccgttttta gtgttgtttt cgttatttgt tgggatgact gcagctaatt tggcagtaac
     2041 agatacagag cttggtttcg ttggctattt agcttgggga attggcgcga cgattggtag
     2101 ttttatttta gcactctaca ttttaaacaa aatgcgcggg ctttttcaat tgtctaaaac
     2161 gaattaaaaa aatagctttt ttatagcagg taagtccggt ataatagagg atagaatgag
     2221 cgagggagga tttagcattg acgacagaaa cagaaacgat taaaccgcag ttagctgaat
     2281 tgaaagctaa tttaacgaag cggaacttgc aatatgtgat ggaagtagaa aaacatttgc
     2341 gagaaactca ttacagcgca gaacaacaag agattattgt ttatgaaatg agcgaaaaga
     2401 ttttagccga acagaaaaaa ggcataacag cgagaaaatt atttaattta acaccaacag
     2461 aatatgttgt ttctttagat gtgaaagctg ctacagtgga gcaaaatacg gacaaatggt
     2521 ggctagtact tgacggtgga ctccttgtac ttggagcgat gatgctgatt tccggaatta
     2581 gtgcttattt ccaaaaaaac gcgcagactt taggaattat cgtgttatta atcactgcag
     2641 ttgtcggtgg tttcgcaatg cttatcttgc gtaaatacgc ttcaaacatg cgtgcaggcc
     2701 aaaaaggtgg aacgataaaa tacttactag tagcagttgg agtcattgca gtgtggatgt
     2761 ttgtaatgac gattgtacaa gtaactattc ctccaaatat caatgtagcg ttaagtccga
     2821 ttgttaacac agttggtggt gcaattatta ttgccctacg tttctatgtg aagaaaaaga
     2881 aaaatattcc atccttataa gaagatggac acggacaggt gacctagatt gcataatgcg
     2941 agttgggtcg cctgttttta tttcccggga aatactgata cagatgaggt gaataaactt
     3001 atgttttcgt atgaagtgat tagacaattt acagagacag agcatcattt ataccggtac
     3061 ataatggaca atcgggacaa agttatgttt atgagagtgc gcgagctttc ggaagtgacg
     3121 cacgtctcgc cggcttcgat tgttcgattt acaagaaaat taggctgtga aggcttttcg
     3181 gaatttaaag tgaagctaaa acaagaagcg actcgtgagg taaagaaaaa aaccgcggat
     3241 acagtggaag ttttagagga attctttgaa cgaacaatga accgtgatta tgatcatgtg
     3301 ttagacgcgg cggcggagat catcaatgaa gccgatttag tcgtgttttt cggaattggg
     3361 acttcaggga ttttggcaga atatggcagt cgttttttct ccaatatgaa gaagcggact
     3421 ttttatatta aagatccatt ttatcctaac ccgggagagc aatttaaaaa taaagcagtg
     3481 atgattattc tttctgtgtc aggcgagacg gatcaggtgc ttgagcaggc gcaaaatatg
     3541 cagcagtatg gcagtcggat tattagtata accaatacga gccacaatac gctcgcgggc
     3601 ttgtctgatg ttaatattcc gtattatgta actcaagaaa tggttgataa gacgaatatt
     3661 acgacgcaaa tcccggtact ttttttactg gaagcgatgg cgaagaaaaa ttataatcaa
     3721 gagcaagaag aataataaaa agcgtgtagg ttttcatgac ctacacgctt ttctttagct
     3781 tattttttta tatacatgca cgaactcagt gacaacttct cttaaagttt cggttgtgat
     3841 gagtaagtct tccgcatgga ttaaaagtaa ttggatttcc actttttcac cggaagcttc
     3901 tttttggatt agcttatgat gctcgtggtg cccatttgca agagtttcgc taccttcttg
     3961 tagttttgct tctgcttcct cgaaattgcc ttcacgagcc gcacgaagcc cttctaagta
     4021 actgcttctc gcagaaccaa cttggctaat catgccaaaa attactgttt ccatttcatt
     4081 catgtctatt ttcctcctgt aaaaagtgat acactgcgcc gagtaggcca gcttggtttt
     4141 tatgtgttgc tgtttcgata attgtgtcac gcagcccaaa gctctccata tgatgcttta
     4201 gctccgtgat aaaagtaggg cgacttgtaa ttccaccacc aataaagata tgcgttggat
     4261 cgaacaagta aattaaatta taaagccccg tacaaattcc agtataaaac tcagtaataa
     4321 gacgttctga gacggcgtcg tgtccatcat acttagcaaa aatttcttcg ccagtaatct
     4381 cttccaaagg gcgcccagta agttccgcgt attgtctgcg aagaacaagc attgtggtag
     4441 tctcatttag cgtatatttg ccaggacgga aagcccctgg acgttcacta aacatataac
     4501 caaactcgcc agcccggaaa cgaccaccac gaactaatgc gccattagaa aaaataccgc
     4561 cgccaatccc agttccgatt gttagacaaa gaaaatcatc caaattttgt cctttaccaa
     4621 gccatttttc ggcaagaagg gcgcaattgg cgtcattttc aatggcaaca ggaattccgg
     4681 tttccgcttc aagccattct ttcaaattaa agttatcaaa tctacggata gcgccgccca
     4741 ttgtaataag tccggttttt gggttcacat agccaggcgc gctgactgca attcctgtca
     4801 cgtccgtatt ttcagcaaga aatagcttca tttctgctaa aatctggtcg ccatcactag
     4861 cgattatttc ggctgatttt gttagtataa tttcaccatg cggcaaaacg acccccattt
     4921 taagggccgt tccaccgata tcaaaagctg caattttcat tttgtcacat cctattgttc
     4981 cgttgaggct gttgcatttt tgtccattgc agcatcactc gcggcaattt tgttagatac
     5041 aagtacgaat ggtagataaa tgactgtcgc gacggctaga cagagcaagc cgaccagaag
     5101 cgcgagccag tttcctcctg taccaagaaa tggaatcagt ggtcctggag ttgtccaagg
     5161 cacttgatag gcgacaggtg gaataagttt tgttgagata aagaagtaac caattaatgt
     5221 attgattgct ggtgtaatga tgaaaggaat aaccataatt gggtttaata cgattggtaa
     5281 accgaaaata actggttcat tgatgttgaa aatccctggt gcaagagaaa gtttcgcgat
     5341 atcgcggtag tctgcacgac gagaagcgat aaagatagca atcagtaaac ctagagtcat
     5401 accagatccg ccgtagtttg caaatccgtc atttaggcca gcccatgttg ctgggtatgg
     5461 agctccccaa gcagaaccgt gctgtgctac gtaagataag ttgtctaagt ttggttcagt
     5521 gaagatggtg tcacgaatag ccgcaacagt gttaggcccg tgaataccaa gaacccaaag
     5581 taagttagaa acaagcccga tgataattac agagaatacg ttagttccca tgtctttaag
     5641 tggcgcttga ataactgtgt aaacaaggtc gtttaaacct tctggagcga ttaaagtgat
     5701 taagtagtta atgacagaga aaagaatagt gatgatgata actggaatta atactttaaa
     5761 agaacgagca actgctggtg gtacttggtc aggcattttg atcattaaac gaggggatct
     5821 agctagacgg ctaaatactt ccccagtaat aatcgctaca ataatagcaa cgaaaagacc
     5881 ttgtgctcct aagaatttga ttgtcatgta agatgcattg tcaactactg tgtaaggtgt
     5941 atacacgata aagaatgcac ctatcgaggt cagtccacag agcaaatcat cctgtttaaa
     6001 gaagatggcg agattccgtg cgactaagaa tacaatcaga atggccataa tattggtcga
     6061 accttgcatt accggcgaaa atacagcctg tgcatcggct aaattaggga aaattttccc
     6121 taggaataag atttttgcaa taaagccatc cggtgataat actgcgaagt taatcaaagt
     6181 gataattgaa ccagccataa ttaatgggaa aactaaaata aatgcatcac gaattgctgc
     6241 aatatggcgc tgcgagttca atttattcgc aactggtact aaaacacgtt ccatgccgtg
     6301 ttcaaatttt gacattatac tcattttaaa acctccctat tttgaatgaa tctcccttaa
     6361 ccaatctccg cgaaagcttt ttcaagaacg gctttcccgt ttaacatacc ataatctttc
     6421 atatcgataa caataacagg aatgcgaccc tgtacgagtt catctacttg cggtttttgg
     6481 taacggactt gaggtccaag catcacgata tccattttgt ccacaacgct gctagcttct
     6541 gatactggta atgcttcgat ttcaatttct tccccaatag aggttgcgtg cgctttcatt
     6601 ttagtaacga gtaagcttgt cgacattccg gccgcacata caagtaatat ttttttcatt
     6661 aaaatttccc tcccaaaatg gttgaagcag agagaacaag gcttatttgc cctgttcttc
     6721 tactaaatta gctccgtttg cttcgatggt ctttttatac cagtaaaaac tatctttttt
     6781 atagcgtttt aattcttttt catcgttttc gtcgcggtct acatatacga aaccgtaacg
     6841 tttttggtag ccgtttaacc agcttagtaa atctgtgaag ctccaagtgc agtaaccgag
     6901 catctctacg ccgtccgtga ttgcttcttg gattgctaga gcatgcgcgc gaatgtattc
     6961 aattcggtac tcatcatgga ttttatggtc ttccgtcaag ctatcatact caccaagacc
     7021 attttctgta atcatgattg gtaatttata gcggttagta attctacgta agccaatgcg
     7081 caagccagtt ggatcaatat cccagtccca attcgttttc tctaagtatg gattattggt
     7141 gtttttgtat aaccccggta caccagtttc ctcggaagtg cctttttcgc cagttgtatt
     7201 cattttccca gaaccaacgc cgtctttccc attaaatgca tgagtcattg agcggtaata
     7261 gttaactccc atgaaatcag gttttccttt tttcagaagc tccgtatcgc ctggtaagat
     7321 ttccggtgca agaccgtgct cttctagcca gttccaagta gcagtcggat attcacccca
     7381 tgtgtaaaca tccatccaga aatgggcatt gaattcttcg gagttttcag aagctaatac
     7441 atttgctggg ttagcatcga tggagtaact tggtccataa gcaaaacttg gtccaatttt
     7501 tccggatgta cctagctcgc ggaatttagc aattgcagaa gcattcgcca agttcgcatt
     7561 gtgatttgcc gcaaacatac gcttgtcgtc agaaacgcca ggtgggtgat acgctaattt
     7621 gtaaccgtgt gagataaata cgttctgttc attaagtgtt acccagtatt taactcggcc
     7681 gttaaagcgt ttgaatagaa gggcagcgta gttagtgaaa tcttctacga cttttcgcga
     7741 ctcccatcca ccatattcgt cttgaagccc ttgcggaata tcccagtgat aaagtgtaac
     7801 gactggctca attccataag aaagaagttc atcaatcaaa ttatcataga atttaagtcc
     7861 tgcttcgtta acttccccgt taccatgcgg gataacgcga ctccatgcga cagagaaacg
     7921 atatgctttt aggccctgtt cagccattag tgcgacatct tctttataac gatggtaatt
     7981 atccaccgct acatctccgt ttgtttcttt gaatgttgtt ccaggaatac gaacaaattc
     8041 atcccataca gatggtcctt taccatcctc atcccaggca ccttctactt ggtacgctgc
     8101 agaagctgat ccccatagaa aatcttttgg gaaaggtttc aacttattat gttccattat
     8161 ggcacctcca aaaattatgt gcgattagtc tgttttagtt ttgcttgcct tattaatgta
     8221 aacggtttcg actaattggt aaatagattt tggtgctttg ggttcgtgtt tcatatcaat
     8281 ggtataagtt tctgagctga aacgctgtgt ttcgtgcatg tgattggaag aacaattgac
     8341 atttggggaa gtatccctta ttctatatgt attaatgaaa agaggtgaga tgacatgttt
     8401 cttttgaatg cgcgaactag tatagctaaa tttttgtata ttgtccgtgc aattttttcc
     8461 ggtattgcag ttacattggc gaagtctgcc caaaaaactg tataactaga aaaaatgaga
     8521 gaagcatgga gtcacgcaat cggtttgtat agtgctaaat tagtattata cttataattg
     8581 gcgtcgggcg cttgtctgac gctttttttg ttgtctgaaa aattgtttca cgtgaaacaa
     8641 tttgccatgc ttccttggat aaatggagga taaaatgaca atagtagcaa tgaatgatgt
     8701 agttaaaagt tttaccggag atattatttt agagaaagta tcacttcaat tagaagaagg
     8761 tgagcgcgtc ggtttaattg gtcgtaatgg cgaagggaaa agtactattt tgaagatttt
     8821 aaaaggaact gagggcgttg atagcgggat tgtgacgagc aaaaagggcg cgaaaattgg
     8881 gcttttagag caattatcga cggtggatcc caatataata gtagaacaat atttacgaac
     8941 tagttttggt gagttagagg agctggaaaa agaattacga gcattagaag gagaaatggc
     9001 aacaaattcc agcgaaaaat taatgaaccg ctacggagat aaaatggctt tatttggcga
     9061 gcttggcggc tatgagatgg atgccaattt gaataaagtg gtgaatgggc ttggtattgg
     9121 attgctactg tcgcaacgat ggggagactt gagtggtggt gagaagacga aggctgcatt
     9181 agcgcattta ttattacaga aaacagattt attactctta gatgaaccga cgaaccattt
     9241 ggatttgatg gcggtagaat ggctgaccgc gtttttacaa cattattcgg gaaccgtatt
     9301 agttgtatct catgatcgct actttttaga tgaagtagtc gggaaaatgg tggagcttga
     9361 gaaccgcgaa ttaatcgttt atcatacgaa tttttctgga tatttgaaag aacgagaaga
     9421 acggctattg cgggaattcc aagattacaa agaccaacaa aagaaaatca aaaagatgca
     9481 gcaagccatc aaacgattgc gccagtgggc aatgcaagcc aatccgccaa atgatgccat
     9541 gttccgaagg gcgaaaaaca tggaacgcgc attagaacgg atggaaaaag taaagcgtcc
     9601 agtgttaacg caaaaacaaa tgcaattaca attcgatgaa gctggtcgaa gtggacaaga
     9661 agttgtggtt atggaaaact taagcaagtc atttagcgaa aaagcaatcg tacaagatgt
     9721 ttctttgcaa attaggcaag gagaacgagt agcgattatc ggtgaaaacg gcgccggcaa
     9781 atctactttg cttaaaataa tggaagggaa agttgttcct gatgttggca tgattaaggt
     9841 tggtgcaagt gtgaaaatcg cgtcgctttc tcagcaaatg gaagagctga atgaaaagct
     9901 gactgtactg gatgcatttc gggataaggt tgctgtgaca gaaggagaag cacgacaaat
     9961 gctagcaggc ttcatgtttt atggagagat ggttttccga aaagtaggga acattagcgg
    10021 cggagaacgt atgcgactta ggttagcgca atttattaat atgccagtga atacgctgat
    10081 acttgatgag ccgactaacc atttagatat cgcctcgcgt gaaattttag aagaagcaat
    10141 tcgagcattt agcggcacaa ttatcactgt atcgcatgat cgctatttta ttgatcagct
    10201 atgttctaaa gtaatttggc tggagaataa acaattaacc gtttatgaag gtaattacag
    10261 ttatgcaact agtaagcgaa gataatcgac ttgctggaaa tcactttcaa aataaattag
    10321 aatgaagaaa agaggtgatg gtatggagat aacagttgta aaaggtgata ttacggaaca
    10381 agatgtagat gtcattgtaa atgctgctaa ccccggactt ttaggtggcg gcggagtgga
    10441 tggcgctatc catcaagcgg cgggtccgga tttattaaaa gaatgtcaag aggttattaa
    10501 tcgcattggg acttgtcctg cgggtgaggc ggtcattacg tctgccggcg atttacaagc
    10561 aagttacatt attcatgctg taggtccgat ttggaaagac ggagagcatc aagaagcgaa
    10621 taaactggca tcttgttatt ggaaagcgct agatttagcg gctggaaaag aattaacttc
    10681 gattgcattt cctaatattt ctacgggtgt gtatggtttt cctaaaaaac tagcagctga
    10741 ggtagcgctt tataccgttc gcaaatgggc ggaagaagag tatgacacaa gtattgaaga
    10801 aatacgcttt gtttgtttcg atgaagaaaa tttgaagtta tacaacaaat taataaacag
    10861 tgaagtcgtt taagataaca atcttaggcg gctttttcaa atgtttcacg tgaaacattt
    10921 tttactatat tttctgaata aaacaacaac ggaaaacctt cttgacatag ctccaagctt
    10981 cttgtaacat catattcaat aactaaaaat atacattggc tatttcagca tgattataga
    11041 agacaagtcg catgatgtgg atattttcca ccattttttc tttatgaaaa taaggataag
    11101 atgatgcgtt ttttctatat aaaaaagcga gtaccaataa aaaaggagtg tttgcgaccc
    11161 atgtgggaaa caaaatttgc aaaagaaggc ttaacatttg atgatgtttt acttgttcca
    11221 gcgaaatcgg acgtattacc aaatgatgta gatttaagtg tagaaatggc tccatcactc
    11281 aaattaaatg taccaatttg gagtgccgga atggacacaa ttacagaagc taaaatggca
    11341 attgcaattg cgcgccaagg cggaatcggt gttgttcata agaatatgag tattgaacaa
    11401 caagcagaag aaatcgagaa agttaaacgc tcagaaagtg gcgttattat tgatccattt
    11461 tatctgactc cagatcacca agtttttgct gcagagcatt tgatgggtaa atatcgtatc
    11521 tcaggtgttc caatcgtgaa caacgagaaa gagcgcaaac tagttgggat tttaactaac
    11581 cgcgatttac gttttatttc cgattattct acagtaatta aagatgttat gacaaaggaa
    11641 aacctagtga cagcgccagt tggaactacg ctaaaacaag ctgagcagat tctgcaaaaa
    11701 caccgcatcg agaaattgcc acttgttgac gaagcaggta ttctaaaagg gcttatcact
    11761 attaaagata ttgaaaaagt aattgaattc ccgaactctg ctaaagacaa gcatggtaga
    11821 ctacttgccg cagcagctgt tggaattacg aatgatactt ttgtacgtgt agagaaatta
    11881 atcgaggcgg gtgttgatgc gattgttatt gatactgcgc acggacattc agcgggagtt
    11941 attaataaaa tttccgaaat ccgccaaact ttcaaagatg tagtaattgt tgccggaaac
    12001 gttgcaacag ctgaaggagc acgtgctctt tttgaagttg gtgttgatat cgtcaaagtt
    12061 gggattggtc ctggttccat ctgtacgaca cgtgttgttg caggtgttgg ggttcctcaa
    12121 atcacagcga tttacgattg tgcaactgtt gcacgcgaat ttggtaaaac aattatcgca
    12181 gacggcggca ttaaatactc cggtgatatc gtgaaagctc tagctgctgg aggaaatgcg
    12241 gttatgctag gaagtatgct tgctggaaca gacgaaagcc ctggtgaaac agaaattttc
    12301 caaggtcgtc aattcaaaac ttaccgtggt atgggtagtt tggcagcgat ggagcacggt
    12361 tcaaaagatc gttatttcca agcagatgcg aaaaaactgg ttcctgaagg tattgaaggt
    12421 cgcgttcctt acaaaggctc cgttgctgat attatcttcc aattagttgg cggtattcgt
    12481 tcaggtatgg gttacactgg ctctcctgat ttaagacatc ttcgtgaaga agcagcattc
    12541 gttcgtatga ctggcgctgg actccgtgaa agccacccac atgatattca aattacaaaa
    12601 gaagcaccaa actatagcat ttcttaaggt cgaaaaagca ggaatctctt ccaaaagagg
    12661 tttctgcttt tttatttcta ctataaaaat aagaaagctg cgagaaaaca cgaatttctc
    12721 caaaaagctt caattaaagt cataaaaccg ctatactgtt tctatagagg aggcgtgaaa
    12781 aaagataatg atagagcaag caagagctat tttacagcaa aactttggtt atcaagattt
    12841 tcggaatgga caagttgacg tcatttcgaa actttgcgcg ggagaagata cgctagcaat
    12901 catgccaacg ggcggcggga agtcactttg ttaccaaatc ccagcacttc tttttgacgg
    12961 tttgaccatt gttgtttctc cactaatttc acttatgaag gatcaggtag atgcgctagt
    13021 ctcagagggg attgcagcta cttttattaa tagtacactg actaatagag aaatagatat
    13081 tcgactggat gctgcatttt caggtgagtt aaagatgctt tacattgctc cagaacgcat
    13141 tgaaacgcca ggttttcagc gtttaattga gcaggtacct atttcattat ttgcgataga
    13201 tgaggcgcac tgtatttcgc agtggggtca tgattttcgt cctagctacc tgacgctgtg
    13261 cgatagtttg gataaaatga ccagacgtcc gctcgttatc gcgcttactg cgacagcgac
    13321 gcaggctgtt tcagacgata tttgccgatt gctaaaaata ggagcagatt cagtcgttaa
    13381 aactggattt tccagagata atttggcttt tcaagtagtg aaagggcaag ataaagataa
    13441 gtatttgatt gattatttaa caaaaaatgt aacggaatcc ggaattattt atgcttcgac
    13501 tcggaaagaa gtagagcggc tgcacacttt cttgctaaaa aaaggtgttg aatctggtat
    13561 gtatcatggc ggaatgaccg atttagcacg gaaagactgg caagagaagt ttctatatga
    13621 tgatattcga gtgattgtgg cgacgaacgc gtttggaatg ggaattaata aatctaatgt
    13681 gcgttttgtt attcattata atattccgcg caatattgaa gcgtactatc aagaggcggg
    13741 tcgtgctggg cgagacgggg ttccaagtga ttgtatcttg ttgttttccc cgcaagatag
    13801 ccgcatccag cagtttttaa ttgaacaatc cgaaatggac gatgagcgca aacaaaatga
    13861 attcgccaag ctacgccaaa tgacagggta tggttatacg gaaatttgtt tacagaaata
    13921 catcgtgcag tattttggag acgacgagga aaactgcgag aaatgtagta attgcttaga
    13981 tacaagggaa gccacggacg ttacaatttt agcgcaacaa gttttttctt gtataaaaag
    14041 aatgggtgag cgttttggga aagtattaat tgccaaggtt ttgacaggtt ctgctgacca
    14101 gaaagtgaaa gattggcgct ttgacgaact cagtacttat ggattgatga aagatgcttc
    14161 ccaaaaagat gtgttacaac taattgatta ccttacagca gaaaaatatt tacaaccaac
    14221 tgatagccaa tttccttcct taaaactgac ggatagagcc gtttcggttt tacgaggcga
    14281 gctaaaagtg gaaagaaaac aagcgaaacg ggctgaaaaa gttaaaatag atgtaaatag
    14341 tgaccttttc gagaagttgc gggaagtgcg gcgggaactg gcagcaaaac acaaggtgcc
    14401 gccatatatc attttttcag atgaaacgtt acgtgaaatg tgtgcatata tgccgcaaac
    14461 ggaagatgca ctgcttgaag tcaaaggcat tggtgcgatg aaacgcgata aatatggtgc
    14521 agaattcttg gctgtactgc aacaagaggc atcgaaataa aatagaagag agggttttga
    14581 cagatgacaa aaacattagt actggcagag aaaccgtctg tcggtaaaga tatcggccgg
    14641 gtactcgggg ctaaacaagg taagaacggc tatttagaag gtggaaaata tgtagtaact
    14701 tgggcgcttg gacaccttgt aacactagct gaccctgagc gctacgattc gaagtataaa
    14761 aactggaata tggaagattt accaatgctt ccagagaaaa tgaagctaga accaatcaag
    14821 caaacgagaa agcaatatga aacggttaag aagttaatga accgtacaga tataaccacg
    14881 atcgttattg caacagatgc aggtagagaa ggagaacttg tagctcgctg gattattgat
    14941 tatgcgaaaa tcaagaagcc tctaaaaaga ctatggatct cctctgtaac ggataaagcg
    15001 atacgtgaag gcttcgaaca cttaaaacca gggaaagctt atgaaaatct gtatcactct
    15061 gcagtcgctc gttctgaagc tgactgggtg gtaggaatca atgctacgcg tgcgttgaca
    15121 acgaaatata acgcacaact ttcctgtggc cgagtgcaaa cgccaaccct tgcaatgatt
    15181 caacatcgtg aggaagaaat tcgtaatttt aaaccacgtg agtactatgg aattaccgcg
    15241 ctaaccgaac aagaaagttt cacgtggaac aatgggcaaa cttttgataa agctttagca
    15301 gaaaaactag taaagtcttt acaaggggaa aatgcggtaa tcacagacgt ttctatgaaa
    15361 gaaaagaaaa atttctcacc aggtttatat gatttaaccg aattacaacg cgatgcgaat
    15421 aatagatatg atttttcggc gaaagaaacg ctgaatatta tgcaaacatt atacgagcgc
    15481 cacaaagtac taacgtatcc acgaacagat tcgcgcttta tttcaacaga cattgtccca
    15541 acactaaaag aacgtttagc ggcctgcggg gtgggtgaaa atgcaaaagc tgctcgtcaa
    15601 atcagcggaa aaccaatcaa agcgaacaaa tcatttgtag ataacagcaa agtgagcgac
    15661 catcacgcaa ttattccgac cgagcaacct gtttccctcg gagatttaag cgataaagaa
    15721 cggaaaattt atgaccttgt cgtcaaacgc tttttagcag tgctttcaga cccatatatt
    15781 tatgaagaaa cctctgttaa agctaaaatc ggccaagaag aattcacttt aaaaggtaaa
    15841 gttgtcaaat cccttggttg gaaaagtatt tacggagagt cgcgcgaacc agatcaatta
    15901 actaaaatga aaaaaggcga cactatccca gttaaacgaa tcaatttaga gacggggaaa
    15961 acaaaaccac cagcgagatt taacgaggca actttacttt cagctatgga aaacccatct
    16021 aagtacatgg aaacaacgaa caaggcgctc gccaaaacac tgggtgagac aggtggactt
    16081 ggaacagttg caactcgtgc agacatcatt gaaaaacttt tcaatagctt ctccttagaa
    16141 aaacaaggca aggacattca tattacttcc aaaggacgcc aattgctaga attagtgccc
    16201 gaagatctga aatccccaga actaacggcg cgttgggaac aaaaattatc taaaatcgca
    16261 aaaggcgaac tagattatcg taaattcact gaagaaatgc gtgactatgc gaaaaaagca
    16321 gtaactgaaa ttaaacaaaa cgataaaaaa ttccgtcacg ataacattac ttcacaaaaa
    16381 tgcccagact gcggtaagcc gatgctaaaa gtgaaaggca aacgtggtac gatgctagtt
    16441 tgtcaggacc gtgaatgcgg tcatcgtgaa tctgtttcaa gaacgacgaa tgctcgttgc
    16501 cctaattgtc ataaacgaat ggaaatgcgc ggcgaaggtg ataaacaaat ttttgtatgt
    16561 gtttgtggac accgggagaa actatctgcc ttccaacaac gtcgtgacaa acagaaaaat
    16621 aaaaatgtat ccaaaacaga tgtagctaaa ttcatgaaaa aacaaaacaa gcaagaagat
    16681 gagccgttta acaatcctat ggcagaagcg cttgccaaat taaagctaga taaataagaa
    16741 tggacaaagc gacccactca tattgagtgg gtcgctttgt ttgacatagt ctgtcgtata
    16801 cgaaacaata aaagagcaat caatactgaa aaggagatgt ttcacgtgaa acataatcaa
    16861 ttaattattg aaacggatgt cccagctgaa atgcgcgatg gtgtaacgct ttacgcagat
    16921 atatatcgtc cagcagacgc gggggaatat ccagttttac ttacaaggtt accttatagt
    16981 aaatcatacg ggcttcactt tattcgtcct aatattttgg cggagcaagg ttatgttgtt
    17041 attgttcaag atgttcgtgg cagatatacg tcagaaggag attttgttcc atacatagca
    17101 gaagttgacg atggatatga tacgattgag tgggctgcga acctgcctta tgctaacgga
    17161 aatgtcggca tgtttggttt atcttattat ggttatacgc aaattttagc cgcaattagc
    17221 gggaacaaac atttgaaagc cattgctcca attatggctc aaaatagcat gacagatgtt
    17281 tttaatgacc acgacggcgc tttagaactt ggaatgtggg aaacttggaa tctagagtcc
    17341 atgcttccaa acatgctagc ccgtacttat aaaacgcaag atgaattaga agcagcagtg
    17401 agcctattaa tgaaaaatct agacaattta gacgcacttt atcaatttaa accttataaa
    17461 gactggccag caatcggtca aaatgaaatg ccttacttct ctgagttatt aaattatgaa
    17521 ccaacacata accattggca aaaaatcgat gcaaaaagca attatgataa aattaaagtg
    17581 ccaggtctcc atgtagcagg ctggtatgac tgctttttag ataaaacaat cgctaatttt
    17641 caaaatggtc acttgcgagg tcttggagat aagctcatca ttggtccatg gacgcatgct
    17701 aatttcactc agatgattgg cgaccgtgat tttggaatgg cggccactaa atggggagag
    17761 gcgaatatgc atgctagaca tatagaatgg ttcaatcatt ggctgaaaaa agagccttta
    17821 ccagcatcag cgcctgttaa ttattttgtg atggggttaa atgactggaa aacagctgaa
    17881 aactggcctc ctcaaaatgc aaatatgaca ccattatatt ttaaaaatga aaaagtgagc
    17941 gcagaattca cacctcctac aacatcttca gaagcaaaat ttagctatga tccagaaaat
    18001 ccagtaccat caaacggtgg agggacctta cataaggcac tacatgcaga tggacctcgt
    18061 gaccaacaac aaattgaact tcgtgaagac gttctttgct actcaacgga gccactaaaa
    18121 gaagcaatcg aagttaccgg accaattcaa gtgaaactct gggccaaatc agatgcacct
    18181 aacacggatt ttacagcgaa attagtggat gtatttccag atggaacggc ttttaactta
    18241 gcagatggca tcatccgggc ggccaagcaa catggcgaca atgtgcaaaa taatattaat
    18301 gaatacacta tcgacctttg ggcaacaagt aatttattcc aaaaaggtca tcaaatccgc
    18361 gttgaaatat cttctagtaa ttttccgaga tttgatccaa acccaaatac aggcgataac
    18421 tttattaatt ccactgaaag ccaaatcgcc aaccagacga tttatcatag ttctgaattt
    18481 ccatcacata ttcttctgcc aatcgttcgc tagaaatttt gtttttttgg gcgaaaagtt
    18541 ttatatacgg cactactaaa tcatggtaaa atatgaaagt atccgtcaaa aaaatgaaac
    18601 ttattcgaaa agggaatttt tatgataggt ttctttatta aaatatagat aaaatgagtt
    18661 aataatttac tcaaatgaag gagaagttgc agtgaaaaac ataattaaaa aaacagggat
    18721 tgtaatcatg gcagcatccc ttgcagtaag tggcttctta gtaagcccga aagcagcaca
    18781 agccgcagaa gcaccaaatg taaatgcaaa cgcagcaatc gcaattgaag aaagtactgg
    18841 taaaatttta tattcaaaag acgctgacaa gctaatgggc atcgcatcca tgacaaaaat
    18901 gatggacgaa tacttactac tggaagcaat tgacaaagga caaattaaat gggacgacaa
    18961 agtaaccatt tctgaatatg cttacaaagt ttcacaagac acatcactat cgaacgtacc
    19021 acttagactt ggcgaagaat acactgtaca agaattatat gaagcaatgg cgatttactc
    19081 tgcaaacgga gcagcaattg ctatttccga aaaaattgca ggttctgaaa aagaatttgt
    19141 cgatgctatg aataaaaaag cggacgaact taatctaggc gagcaccaat tcgttaacgc
    19201 tacgggcctt aataacgaag acttaaaagg cggtcagcaa gtaggtggac cgaaagacga
    19261 aaacaaaatg acagctcgcg gcatggcgaa gttagcaaaa cacttaataa atgattaccc
    19321 agatgtactt aaaaccgcta gtacaactaa gaaagagttc cgaaaaggta catcagacca
    19381 aattgatatg acaaactgga actggttatt accgggcttg atttacgggc gcaaaggtgt
    19441 agacggtttg aaaacaggaa caactgatta tgctggaatg tgcttgactg caaccgctgt
    19501 acaagatgga atgcgagtta tcacagtcgt actccatgca aatggtggag cgcctggcga
    19561 gcatacaagt gctcgttttg atgaaacaaa caaaatgctc gattatgctt ttaataattt
    19621 caaagtaaaa gaagtgcaaa aagcaggatc aaaagtaaaa aatccttcta caattgcagt
    19681 agataaagga aaagaagata cagtcggact agttacaaaa gatgcagtga agctagttgt
    19741 accgaagaat ggcaatgaac ctaagttaaa tacaaaggta actatgaaag aaaaaacaat
    19801 agaagcacca gttaaaaaag gtacggaagt tggtaaaatg gaagtatctc taaaagatgg
    19861 cgacaagtta ggctatgttg acggaaaaca aacagaaaca attgacgtac taactgctag
    19921 cgacgttgaa aaagcgaact ggttcatgct ctccacacaa gcagtaggtt ctttctttac
    19981 aggcattggt aattacgttt ctgatggtgt aaaagggtgg tttaattaac agtagaacaa
    20041 ttgtagtacc gatataaata aaagagtcga tttcctgaat taggaaatcg actcttttat
    20101 tggctaactt tagttcaatg gatttctttc gcggtattta acaagttcta agaagtagct
    20161 ttgtctgctt ctatgagcta tcgtatcaag gattaatcca caaatgaaga acagcatacc
    20221 cattatgatt aaaccagttg caagtaatgc actcggaaat tttagtacca agccaatttg
    20281 agcaaactga attatgactg gcaaaccaac tagaactcct acaagcacaa acaaagaggc
    20341 taataaattg aaaaataaaa acggacgact atttttaaat aatcttacaa tcgtcataat
    20401 tactttgaaa ccatcagaaa aagtgtttag ttttgattca ctaccttctg gacgatcacg
    20461 gtaatcaatt tcaatttctt tcactaaaaa gcgattttcc aatgcgtgaa tgctcatctc
    20521 agtttcaatc tcaaaaccag ggcttaaaac tggcatagtc ttaacaaaat aacgatcaaa
    20581 gccacggtag cctgtcatga tatctctcaa attacttttg aagatacgat taattgtatt
    20641 acgtactagt gagttaccaa agtcatgaaa atttctttta ttttcttcag tgtaggtacc
    20701 attactcaga cgatcaccaa taaccatatt agcttcctta ttgcgaagca cctctaatat
    20761 ttcatggcag tattctgctg gataggtatc gtcaccatcg accattaaat agtaatcagc
    20821 atctatatcc gcgaacatag aacgtactac attaccttta ccttggcgca tttcttttcg
    20881 aacgatagca ccatgatctt tcgctatttc aaaggtttta tctttagaat tattgtcgta
    20941 cacataaata tccgcatttg gtaattcttt cttaaaatca tcaattacct taccaattgt
    21001 aagctcctcg ttataacaag gcaagagtac agctactttc tcatttagaa ttcccattat
    21061 tctctcctta aaattgattt tctttgtaat tttttaattt agttgcaaaa aagacaatag
    21121 gcacggtgaa aataaaacta taagaatatc taaagtctgt tgctggcatt gcgattgcta
    21181 tagtaataag tgccattact acaggtgcaa aaataagaag tttcttttta ggacgttgga
    21241 ggcagacggc agcaattgct attatgagca atactaatgg aatggctcct tttaataaat
    21301 aattttgcca ctcatttgtt gtttttgcat aaatgctatc tgttattttc ttcagacttg
    21361 gagctttaga tattgaaata agtggattag tagagtcatc aatccgtctc ttatactcat
    21421 tgtagctaac agcatctttt ccagttgcat ttttgtattc attttgatag acttcatatc
    21481 ctaatttatt aatctcttct tccgataaac cttctgggaa gaatttggcg aatgctctca
    21541 catcatatct tgtatcttga atattcgctg aagtatcaaa gaatacttta taattttctg
    21601 gagaatagaa ttgccaaatg actgctgttt gatctaaata agcccctaca taagtaccga
    21661 aattagccgt taagagtttg aaccaatttt taatgtatag tccaaaatca tcttcaatga
    21721 cggatgaatt gtatttggta tcatgcttaa ttgggtctac agtataaggg ttgtaatctt
    21781 ttttccaatt ttcttcaggt aatatggaag tgaaatactc ttttaattca ggagtaaagt
    21841 ttccatcatt gtaaaaagta gccccaattt gttgggaagg aattgctagc gcttggttta
    21901 atggattagg ttgcgcatta agcccgtttg tcataaccag accaaataaa aaattcagtc
    21961 ccaaggttcc aacaagaata ccggtaataa taagacgaaa gtttttcatg aaaataagca
    22021 agcacagaag cgatacgatg ataatcatca ttccattgtt tcgtaaattt atacaaacaa
    22081 aagctactaa aacaaaagcg ataaggtgcc accaattttt cagccacatt ccattagatt
    22141 gtactatttt taaaattaaa acggtgaaaa gtaatataaa ggctgcaaat ggaaaatctt
    22201 tccatgctgt tgcagaataa aacattgctg cagggtaaat ggcatagccg attgaaatac
    22261 aaacaccaat ccaaatatgc gcgcccattt ttacaagagt ataaatagca aagccaacga
    22321 ttaatgaaac aacaattatt tgagaaaaaa tgtaactcga aggtgagtcg taaatcgcac
    22381 ttgttgtttc tatccacaaa gtgtgtaaaa gcggatgcca ctgactatat tggcgaatac
    22441 cgtgagccat tccccattgg taataggagt caaatgtcat ttttgctgga taataggcta
    22501 gaaatgaaat catccagacc acgaatggaa tactcgtaaa tagtgcgaaa aatggccatt
    22561 ttactttgcg attcggtctt gctttatatt ccgttcgcat ttcaagtaat aaaagtaaaa
    22621 caaagatagt gattacaaga aaagttcctg ctaaaataat actattaaaa acaaaattcc
    22681 cgccatatgg tccaccattg aatgatgaag ccatccaaaa taaactaatt attagtgagg
    22741 ttatcaatgt tgaccattga aattgaaagt ttttctcttg tctaaaataa agaaccgtta
    22801 aaactactgc aaataacaac cagcttaaag ttagtttaaa ggtttctgaa taatagctaa
    22861 tagaaattaa acttagtaat agtagcaaaa ccccaactat aactcttttt ttatttaaca
    22921 ctctttttct ccactcccta tatgagacgt tactatcctt taatatagca aaaaaaagat
    22981 gctagcgcaa ttgaaattta aagcgagccc ttacttgaaa aagataagga ctcgctttaa
    23041 atttactagt tagacaacgt tttgcctgcc agataaatca ctctttggaa gagtgattat
    23101 ttattcaata acaaactgat tatgataaag ctcagaataa aatccttccg ccttcatcag
    23161 ctcatcatgg ttaccttgtt caatcacttc accttgatgt agcacgacga tatggtcggc
    23221 atcgaggatg gtttttaaac ggtgggcaat gacgaagcta gttcggccag agattacgtt
    23281 gtccatagct ttttggatgc ggctttcggt tacggtatct acattacttg tcgcttcatc
    23341 tagaattaga agagacggat ttgtaataat agttctcgca atactcataa gctgcttttg
    23401 accaacgctg aaaatattgt tttcatcact gatttctgtt tcataacctt tttctaggtt
    23461 cataatgaag tcgtggatgt tagcttgttt tgcagcgttg attacttcgt cgtcgcttgc
    23521 ttccggctta ccgaaaacaa tgttatcacg aatggttcct gtgaatagca cggaatcttg
    23581 tagcacgata ccgacttgtt tacgaaggga atctaggcga atatcgcgga tgtcgatatc
    23641 atcaaagaga atcgcgccac catcgacatt atagaagcga ttaagaaggt tcataacagt
    23701 tgttttacca gagccagttg gaccgacaag agcaaccatt ttacctttac ttacatcaat
    23761 cgaaacgtct tttagaactg gttttgcagg gtcataagca aaatctacgt gatctagttt
    23821 gacaccttta ttaataccat caattgtttg taagttttcg cgttctactt cttcttcctc
    23881 tgcaaatact tcactaacac ggcgcgcacc agtgattgct agttgtagca agctgtactg
    23941 ggacgaaatt tgtgtaagtg gcatatagaa ttgttgtgaa tattgaacga acataacgat
    24001 taaaccaaga gcggctgtgc gttcaaggtc gccgtttaga gctaaccatc caccgaagaa
    24061 gataacgata gctgtattta atagggaaat accttgcatc attgggaaaa gtaaaccgga
    24121 gtaaacttga cctttgtaag tggcgttttt aacgatattg ttttgtttaa caaagccgtc
    24181 aattgtttct tcttctaagc catttgtgat aataattttt tgaccagaga ttttttcgtc
    24241 aatgtagccg ttaagtacgc ctagttcatc ttgttgaata tcaacgaatt tgcgggcttt
    24301 tcgaataatc actgtcgcaa taataatcgc aaatggagca gatattagag taacgaaggc
    24361 tagttccacg ttttgttgga acatcatgat gataacacca atcattagcg cgacgttgga
    24421 tagtacttgg atcaatgctt ggtttagtgt gttggaaata ttatctaagt cactagtgaa
    24481 acgactaagc atttcgccat cattgcggct atcgaagaaa cggattgata gtttttccat
    24541 cttgcggaaa agtcctatac gcattctgtt cgtcgattta ccagctaccc ctgtcataat
    24601 gatactttgg ataaaagtgg cagcagcgag gagtacgtag cagagaatca gcatccaaat
    24661 gatatggatg aagtcactct tgtcatcaac acccgtttgc attaaattaa caacgtaatc
    24721 tccaagttct tgaacggcgt taccaatata ttgtggtgct tttacttgaa ggtatgtcgc
    24781 aaaaactaca gcaattaaaa tgacaaaaag ttgaggctta taaccccgca gatagtgcca
    24841 gaaaaagcga ctaatttgtt tgaactcttt cattatgcgg ttacctcctt gcctttttga
    24901 gtgtcgtaaa tttcacggta ggttgcattt tctttcagta gttctttatg ggaaccgacg
    24961 ccaacgagtt tacctttatc taacacgaga attttatctg cttgaataac agaagagatt
    25021 ttttgtgcaa tgatgaaagt cgttgtgtcg tctagctctt tattcagcgc ttctttcact
    25081 aatttctcgg attttgcatc aagcgcgctt gtgctgtcat cgaggattag gactttcgga
    25141 gaaccgataa cgccacgtgt aatcgaaaga cgttgttttt gtccaccaga gaagttgttt
    25201 ccacgttcgg aaacaggtgc atcatatagt tttgcttgct tgtcgataaa ctctttcgct
    25261 tgtgctatct tacttgcgtg ttccatttct tcggtagttg catctttttt accatgacgt
    25321 aaattgtctg caatggttcc ggagaaaaga attgcgcgtt ggagcacgaa ggaaacagtg
    25381 ctgcgaagcg tttttttgtt gatatctttt aggttcgttc cgccgataat aacttcacct
    25441 tccgttgggt cgtaaagtcg ggggattagt tgggcaagag tggatttacc agaacctgtt
    25501 gcaccaacaa taccgaccat ttcaccaaca cttgctttga atgaaatatc ttccagagca
    25561 ggcgtatcgt caccgtcgta tttgaaacta acattacgga actcaactgt accttctaaa
    25621 tcttgttctg gtgcgctttc attgtaagta atatctggtt ctgtttccag aacttcggta
    25681 atacgcttca aagaaataag cgcacgagaa gccatcatca tcagcatacc accaataata
    25741 attgccatca taatttgcat taagtagttc atgaatgatg cgatagctcc gataacttca
    25801 ggattatctg cagccatatc gcctacaaag aaaatagaaa caacaattgc taagttagaa
    25861 acgagcataa atgcaggaat cattacagag aaaagcgttc caacgatgat tgtgtggcga
    25921 gttaatttgt cactgacagt tgtaaagcga ctgatttcat tatcttcttg cacgaaagat
    25981 ttaactacgc gcatgccagc aaggttttct tttgcaatag aattcactcg gtcaattaac
    26041 ttctgaataa tggcaaaatg tttacccata gacccgaatg tgaatacaac aatcagaaca
    26101 acaagaacaa cgagtacaat aattacccac cataattcag gtaaagtaaa catcgctaaa
    26161 ataaaagccc cgatgaacat aatcggaatt ctcgtaagcg attgtagtga aagcatcact
    26221 aagttttgaa cttgggtaat gtcgtttgtt tgtcgaacaa ctagattacc tgtcgaaagt
    26281 ttttcgatgt tgctgaatga aaatgtttgg attttacgga aactagattc acgaatatct
    26341 gcaccgacgc cttgagcgac tttggctgaa agtattgtgt ttaggatccc ggcgataagg
    26401 ccgactgcgg caataccgat taaaagtgcg ccgatggatg agatttcatc catatcatct
    26461 ttcatgatgg cgtctaggac ttgctgaagt aactttggtt gccatagttg tgagataacc
    26521 atgactacta caaacagtgt agatagtgtc gcttgtagct tgtatttttt tagatggtga
    26581 aacaatactt tcatgatttt cctcccttgg aaaacggaaa taaaaacgtg
//
LOCUS       DABQVC010000013        26424 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.013,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000013 DABQVC010000000
VERSION     DABQVC010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 26424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26424
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.013"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(40..1497)
                     /locus_tag="IBJ56_000384"
     CDS             complement(40..1497)
                     /locus_tag="IBJ56_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HAM3416668.1"
                     /translation="MKKKWGVIIASLCLLLGLSACGSDEKADANEVPTLKWYMIGTPQ
                     KDTEEVMKEVNKYTEEKIGVKVEMTQIDWGDYGKRMQTVINSGENFDIAYSAAGEFVS
                     YSQKGAFLPLNKYLDKEGKNMKAELNDVLWEGATIDGNIYGVPSNKEVGEQQVYVFNK
                     NLVDKYKMDVTKVKNFSDLEPMLKTIKENEPSITPIGGNKDFKPAFPYDYLIDNAVPL
                     PFAVNQYEDTGKIVNFYEQPETLDILKSLHSFYQKGYVTKDIATSTDPWSYDKENWFV
                     RIEKYQPYAENIWDKNTGGKYKVVTQPIAETPIIKNNSVTGAIQAVSVTSQHPEEAVK
                     FLDLLNTDEYLRNLVDKGIEGTHYKELDDGKIQDLPARVERYSMPTYALGNHFILKLY
                     EDEPADKWDQFKEFNRKSVASPGLGFYFDSSKVRTEIASITNVCNEFAPALLTGTVDP
                     VEYTEKFKAKLNDAGMKKVMKEMQKQYDEFRASQE"
     gene            complement(1517..2488)
                     /locus_tag="IBJ56_000385"
     CDS             complement(1517..2488)
                     /locus_tag="IBJ56_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HAM3416669.1"
                     /translation="MAEQLEAVSEIEQVRGEMEKPAKNKPAKDIIGFGKKMNVAMNIM
                     LAFLALICIFPFLYIIVISFSSESSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYG
                     ITILVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQ
                     FLHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVP
                     LSLPGLATIALFSTLGYWNDWFQASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAY
                     TAGAFKSIPQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGGVKE"
     gene            complement(2507..3436)
                     /locus_tag="IBJ56_000386"
     CDS             complement(2507..3436)
                     /locus_tag="IBJ56_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3416670.1"
                     /translation="MKKVLSQIRANRIWLLMVLPGVLWFLVFSYLPMFGTVIAFKDYK
                     IDGKGFLSSIMSSDWVGLENFKFLFQTNDAFIITRNTVLYNLVFIIVGLFLGVALAII
                     FNSLLNKRGAKIYQTGMLFPHFLSWVVVSYFLFSFLSEDSGLMNNILLAFGQDPISWY
                     NDPKYWPFILIMMNVWKGLGYGSIVYLAAIAGIDRTYYEAAMIDGAGKWQQIRHVTIP
                     ALTPLMVILTILNVGKIFNSDFGLFYQLPRNSGPLYPVTDVIDTYVYRGLTSLGDMSM
                     SAAAGFYQSIVGFILVLLTNYIVKKINPEYGLF"
     gene            complement(3549..5033)
                     /locus_tag="IBJ56_000387"
     CDS             complement(3549..5033)
                     /locus_tag="IBJ56_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3416671.1"
                     /translation="MLKIVLVDDEPLILKGLESIIPEFEQSIEIVGTAKNGAIALELF
                     ANQDVDVLLTDIEMPVMNGLELIDEWKKRQPTTKTIVLSGFEDFHYVKRGLSAGIENY
                     LLKPLNEQELKETFIQIEKKQLTDSVIPREEAYYILRDNTIWRWLNLRINKEEWEERL
                     ALYDMILNSKENAVLIQIQPTKEINLTEWKNLSEQYRKDFPFMLLTPENEIIIGITEQ
                     TSISEQILAIHQDVKKRLSNEAFYLFISEKVQGEMMYPQAFRQLTRLLPERLVQEPGS
                     LIAYQKRTKHTWRPKRKQHQLAKLLVMNNEKEIKAWIQHFFKEWNDHKLESDPHQMLH
                     ILNELLVMMAESDPKELSESMGRIAEETSIEGLEEATLAYAIRYYNRKKQTDESKSPI
                     IQNVLSYITEHFAEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKE
                     ELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETPNRYRKIHQ"
     gene            complement(5033..6772)
                     /locus_tag="IBJ56_000388"
     CDS             complement(5033..6772)
                     /locus_tag="IBJ56_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HAM3416672.1"
                     /translation="MSMTQELPRKRVFKRMLLIFSLTSLFTVSLLLFFIYKYYTNIQL
                     DTNLQRAETIANKQLDALTEKQKALISLTQDIYRNSDLMQDVQIAMTNDYGSYTEQNI
                     DNYFKSKNFYSVDMQTYLQSYFSYDEDIIALQLISDDGSYSYTFPSRYREWKETVDTY
                     GEANIATEASKQGTFYTIENKIVVKQPINDPSTLKQMGYLLLYIDPTFLSKWITKDYQ
                     NSIFQIQNTKGVELYSNHPKKQIQTPEKQGWLHADNKKVYFQKTEDETSGLKNNTFLY
                     RVTDDSAPLIELTLFGIGLLLVIFSISINFVISRRYSKRILTIIGGMNRVEMGTLDAK
                     LPVDNNGDELTMISERFNHMTENLDAYVKKVYSLEMEEQKARLKALQGQMQPHFLYNS
                     LEAIRMNARVEGAKATSDMIYQLATLLRYTANHREITTLGEEINYVKQYVRFMEMRHE
                     QPIKLEINIEKRFNHTQIPRFALQPLIENFFKYAFKENQNPIVVITVTAENDNLQFRI
                     EDNGSGIDAEKLKEVQATIESKDETSHIGLANLNKRLQLLYGENYRLTIKSKANEGTI
                     ILFQVPQNTGGEK"
     gene            complement(6829..7440)
                     /locus_tag="IBJ56_000389"
     CDS             complement(6829..7440)
                     /locus_tag="IBJ56_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YesL family protein"
                     /protein_id="HAM3416673.1"
                     /translation="MKLIDKFSVISDWIIRLVWTNLVWLFLVLIGGIVLGFMPATVAL
                     FTITRKWARGDLDVPVWKSAWQTYKQVFVSANLAGAIFALIGIFLYADLRIVFELMQG
                     FWSTILYFFLMFLLFLVGIAFLQYFTVFVHFQMKNARAYVGQAFLLAITSFKNTFMIV
                     VGLVFCAWLISKMPAFILFISGVLPSYWIMKINLHRFKQMEPK"
     gene            complement(7501..8805)
                     /locus_tag="IBJ56_000390"
     CDS             complement(7501..8805)
                     /locus_tag="IBJ56_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HAM3416674.1"
                     /translation="MTNKVPASFNKWIEKVKMTFPENEKLHRMFEKCFTNTYTTTLQE
                     TEEGLPFVITGDIPAMWLRDSTSQIRPYLIVAEEDEEMATVIENLVKLQTNCILHDPY
                     ANAFNKSANGAGFQNDKTAMTDLVWERKYEIDSLCYPIQLAYLLWKSANRTGHFTEEF
                     RKALHQIIEVFKIEQKHTEQSPYRFERENVRQSDTLNNNGKGTDVSYTGMSWSGFRPS
                     DDACMYGYLVPSNMFLVVVMDYVQEIAAAFYPDDKELLKDSADLRKEVAAGIETYAKQ
                     AHPYYGDVYAYEVDGTGRKLFMDDANVPSLLAAPYLGFCEKTDPAYQATRKLILSREN
                     PYFVEGSVLTGIGSPHTPDHYVWPIALSIEGLTAETEAEKQAILEMLIAGDGGTDYMH
                     EGVNASNPAEFTRDWFAWSNAMFSEFVLSMCGVYVKGSPLSK"
     gene            complement(8809..11466)
                     /locus_tag="IBJ56_000391"
     CDS             complement(8809..11466)
                     /locus_tag="IBJ56_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAM3416675.1"
                     /translation="MTRKKAHIISHSHWDREWFLPLESLRFRLVTLMDDVEALLDKED
                     GFHHFHMDGQMIMLEDYLAVKPAKREKMKQLVADGKLRIGPWYMLQDAFLTSGEANIR
                     NLQYGLEMAEEFGQVEKIGYFPDTFGLYGQVPQLMRQAGFDTVVFGRGVNPTGFNNQV
                     FDSAFASKYSEMFWESPDGSKVLGILLANWYSNGNEIPVDKEAAKVFWDKKLADVERF
                     ASTDEWLFMNGCDHQPVQTDLAEALEVARELYPEVEFIHSHFEKYQEAVKAGLAPEKL
                     QTVHGELTSQQSDGWSTLANTASSRIYLKQANAKIERLLERLAEPISVMATEAGVQYP
                     HEYLAYAWKLLMENQIHDSITGCSLDEVHREMEARFEKVEQATMAIIQNAARQITEQI
                     TTNEAGIPITVFHAGGLEATRSIELELETDAIHFSEMHFELIPDELAKLPEQSFRLET
                     STGEEIPVVVESLGIRFNYDLPERKFRDSYFARKYKLTFAVENLPAVGYETIYAHPVD
                     LVNESANQTQDLFLENRFLKVEVAANGTYTILDKEKAIEIAGVGAYEDAGDIGNEYMF
                     KETGDNLRINTLHSKPAIRVQREDKLGKTIEINHEIEIPESASSAFAEEKRRLVWHPD
                     RQSERSENFTTFKITTELTLNKHDKQLTIRVKLNNNVDDHRLRVLFPTGKQTETHQVG
                     SVFEVVTRANKQVKEWTNPAKDNRKQGFVASGNIVVASLGLPEYEVSEHGDKLELTLL
                     RAVSEIGDWGDFPAYEAECHREITAEFHVFLTDDSDVANSTIPAQVNACLTPIFAFQH
                     KSATKENILAEKRDFAEWKTEAGFVFSAFKLAKDNQPIIRFFQTASEPKQLQTMQPWQ
                     KSTILEETTGDAKKQFIASPNEIITLKGV"
     gene            11709..14819
                     /locus_tag="IBJ56_000392"
     CDS             11709..14819
                     /locus_tag="IBJ56_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAM3416676.1"
                     /translation="MSIHMFFTKDKLRGRLDEVALYRYEKTYPIRNFQAAEDMDGEIA
                     ARPNNVLYDNELTIGENWSGRDRYVWLKTTITFPDTKTDTRLIGYFDFGNTGDGHNSG
                     FESLLFVNGEPYQGVDQNHREVLFPDSFAGKKVELVFRLWSGLEGGGTPTIQTHQLKE
                     AFIGYLNLVIDDLYFTSKATLKTLDQLEEKNPTHAPLLQAINRAYLAIDWSTPGSEQN
                     LASMATANQILQAALEKMPKNFPIKVAAVGHTHIDVAWLWRLKHTREKAARSFSTVLH
                     LMEDYPEYLFLQSQPQLYAYIKEDYPEIYAKIKTKISEGNWEADGGMWLEADCNIPSG
                     ESLVRQMLYGQKFLREEFGKPSSFLWLPDVFGYSWALPQILRKSGIKTFMTTKISWNQ
                     YNRMPHDTFQWRGIDGTEILTHFITAPEKNSRISTYNGKMTARELVGLWDKYQDKEVN
                     QELLLAYGYGDGGGGVNREMLEMRRRYDTMPGIPEVKPKSATSYFNDLHETINTTDQY
                     VHTWNGELYFEYHRGTYTSQAFTKKMNRKIELGLRNSEWLSVLANLKQGTSYPTEKLA
                     GIWQILLRNQFHDIIPGSSIKEVYDDALIEYTEAMTENNTLISNQLTNLTTDADEKIT
                     LWNSSTWSRPRYIEISPDNQSNHLAFYDENNAPLPAQKLVNNAWLIQHPNIPALGATT
                     ISVKETANILEQPSFHYKNNQLETPFYQIKWNKAGQFTSIFDKKNNRQVIAENARGNV
                     FQLFEDKPMWHDAWDIDLFYQEKQKEISALDSVEITENGPLQFTMKQVLHSEKSQITQ
                     WIHFYHESPEIRFETEVDWRDRNQLLKVAFPVAVHASEASYDIQFGNVKRPTHWNTSW
                     DYARFETVGHQWADLSEKNYGVSLLNDSKYGYDIKDSTIRLTLLKAAGYPDPDADLGI
                     HQFTYSLYPHQGDFLDGETVQAAWELNNPIFTSKGEIETFSLFQVTNPYVMIDSIKQA
                     EDGDGIILRLHEFAGTHGEVTITSGYPITSITECNLLEENETSLSNPTFAVAPFEIKT
                     YRIHLA"
     gene            complement(14888..15088)
                     /locus_tag="IBJ56_000393"
     CDS             complement(14888..15088)
                     /locus_tag="IBJ56_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAM3416677.1"
                     /translation="MQTGTVKWFNSEKGFGFIEVEGGDDVFVHFSAIEGEGFKTLDEG
                     QSVEFEIVEGQRGPQAEKVTKL"
     gene            complement(15377..16072)
                     /locus_tag="IBJ56_000394"
     CDS             complement(15377..16072)
                     /locus_tag="IBJ56_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HAM3416678.1"
                     /translation="MNTNRKKATPLFVIGGFCLILFITIASAIATESNWVARFDLSWI
                     EKIRGGIQPDKTAIVKFLTTLGSAETTIILTIVVVLILFFLRKFVVGLWFGGTMLVCG
                     VVLNLVLKSLVGRTRPASVNWLVSESGFSFPSGHATATAVFYGLAAMFLIFTVPKMWQ
                     KIVIGIIGYGFILFVMYTRVYLGVHFPTDVLGGFFLGTASVFISLGVYFLVRKPLHNL
                     LVKWRIKDKSITE"
     gene            complement(16086..17075)
                     /locus_tag="IBJ56_000395"
     CDS             complement(16086..17075)
                     /locus_tag="IBJ56_000395"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HAM3416679.1"
                     /translation="METIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDR
                     KHSLGGADGILYVTKSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDA
                     KVETMKAILDVKKATSLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAE
                     LAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAI
                     YVRTFERGVGFTNACGTAMSACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGE
                     ISLQLIGNATFVSKGSVRYENDVVTELTNEATAEQAQYQALVKEVKEFLKTTE"
     gene            complement(17187..19952)
                     /gene="ileS"
                     /locus_tag="IBJ56_000396"
     CDS             complement(17187..19952)
                     /gene="ileS"
                     /locus_tag="IBJ56_000396"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HAM3416680.1"
                     /translation="MEYKDTLLMPKTDFPMRGNLPNKEPEWQAKWEEEKLYEKIQEKN
                     AGRKAYILHDGPPYANGELHMGHALNKTIKDIIVRYKSMAGFSSPYVPGWDTHGLPIE
                     TAIAKKGVKRKEMSIAEFRKLCAEYAMTQVDGQRTGFKRLGINGDWENPYITLLPEYE
                     AEQIKVFGEMAKKGYIYKGKKPVYWSPSSESALAEAEIEYQDKKSASIFVAFKVTDGK
                     GVLDEGTNIVIWTTTPWTIPANMGITVNPDLDYVVIESAGEKYVVAEALLPSLREKLG
                     FEDATVVKTVRGSELDRVVTKHPFYDRDSLVMNGEHATAEAGTGAVHTAPGHGEDDFL
                     IGKKYDLEVLAPLDDRGVFTEEAPGFEGVFYDTANKMVTEKLEEVGALLKMEFITHSY
                     PHDWRTKKPVIFRATAQWFASIDAFRDDLLAAVKGVNWTPAWGETRLFNMVRDRGDWV
                     ISRQRAWGVPLPIFYAENGEAIITDETINHISELFREHGSNVWFERDVKDLLPAGFTH
                     PGSPNGEFTKETDIMDVWFDSGSSHQAVLNARPELSRPADLYMEGSDQYRGWFNSSLT
                     TAVAITGEAPYRNVLSHGFALDGEGRKMSKSLGNTLLPGKVIKQLGADIVRLWVASVD
                     YQADVRVSDEILKQVSEVYRKIRNTMRFLLGNINDFNPTTNAVSYENLREVDKYMLIK
                     LNDLVKNVKDNYEAFEFSTIYHQINNFCTVELSQFYMDFAKDVVYIEAADSHDRRAMQ
                     TVFYEAVVTLTKLLAPILPHTTEEVWNSLIGEGVESIHLQDLPEVKVLADSEEITAKW
                     DAFMQIRDNVQKALEFARNEKLIGKSMLAKVTLYVDGEAKTLFDSLEGDFAQLFIVSD
                     FELVEGLENAPESAFKSNQVAVQITVAEGETCERCRVVKKDVGVNPKHPTLCGRCADI
                     VVKHYEA"
     gene            complement(20235..20762)
                     /locus_tag="IBJ56_000397"
     CDS             complement(20235..20762)
                     /locus_tag="IBJ56_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HAM3416681.1"
                     /translation="MPLSPLDIHNKEFTRGFRGYDEDEVNDFLDQIIKDYEQVIKEKK
                     RIEDTLNNSEERLGHFTNIEETLNKSLIVAQTAAEEVKASAEKEAKLIIREAEKNADR
                     ILSDSLSKARKIAIEIEDLKRQSKVFRERLRMLVEAQMDLIKSEDWQQMMAYDVDATE
                     LASIKEVEAAESEER"
     gene            complement(20858..21379)
                     /locus_tag="IBJ56_000398"
     CDS             complement(20858..21379)
                     /locus_tag="IBJ56_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription repressor NadR"
                     /protein_id="HAM3416682.1"
                     /translation="MKKILGDTRRQMILKWLKEAEAPISGNQLAQKTNVSRQVIVQDI
                     SLLKAGNEPIMATPQGYIYAKETSYTGERRVIAVKHTKEQAAEELNILVDHGVSIIDV
                     IVDHPIYGEITASLHLKSRFDVEKFVRKLQTTGATMLSGLTDGTHLHTIEADTKEQLE
                     QAIKALDKAGFLI"
     gene            complement(21384..22490)
                     /locus_tag="IBJ56_000399"
     CDS             complement(21384..22490)
                     /locus_tag="IBJ56_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HAM3416683.1"
                     /translation="MIYFDHAATTKMSEASLQVFMDASREFFANSESLHDAGTKSAAL
                     LEKCRESFSELLQVPNRGILFTSGGTESNQIAIQTLIHTTDKKEVLVSPLEHASVWQQ
                     LMALEQAGKCRIKVLPVDSFGQVNPATLEKMISAETGLIIIQHVNSEIGTIQPIAELA
                     HIAKKAGVFFHTDIVQSFGKIDLDLSDATSFSISSHKIYGPKGAGILFMKPDSPLQAV
                     LPDVHHEFGFRPGTVNVPAIAAFTTAAYDIIENREQEAIRAMKLKAAICDTLEARVEV
                     EGGPNTSPYILGLTLPNMQGQEALLALNEADIQISTTSACSLRDLAPSRTLIATGKTT
                     EEANRFIRLSFGRENELNDSIIFKEEIDKLLRKR"
     gene            22622..24076
                     /gene="nadB"
                     /locus_tag="IBJ56_000400"
     CDS             22622..24076
                     /gene="nadB"
                     /locus_tag="IBJ56_000400"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HAM3416684.1"
                     /translation="MTKERVIIIGSGIAGCTAAFRLMHDYDVTIITKGLKEESNSMLA
                     QGGVAAAVSKNDTPKKHFSDTFQAGCFHNKVLAVNQLVTNGPIVIQKLIAEGMTFDEQ
                     NGELSLGLEGAHQLPRILHTGGDQTGKFLTTFLQEKLTNIHWQEQKMAIEIIKQNDSA
                     IGVHCLDKENRLHTYYGEHIILASGGLGQLFPVTTNAATISGDGLALAYRAGAKLTDM
                     EFIQFHPTLLFLNGRCHGLISEAVRGEGAKLIRADGSAVMTDVHPRADLAPRDIVAAT
                     LFAEIQDGNEVFLDITPIPNFEERFPGITANLDAYHVPFRETKRIPVHPGAHFLMGGI
                     RTDLSGKTNIPGLYAIGEVANAGVHGANRLASNSLLETLVFGEKVAEYILTQKTNLID
                     HPEIPLSNQTRTPHLPDKQLLQEKIWETLGITRKPEKITEFLHWLTDFDYANHTRETA
                     EISHMLITAKIIAESALKRTESLGAHRILKGVIK"
     gene            24073..24918
                     /gene="nadC"
                     /locus_tag="IBJ56_000401"
     CDS             24073..24918
                     /gene="nadC"
                     /locus_tag="IBJ56_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HAM3416685.1"
                     /translation="MNSILMNQAIQAFLLEDIGQHDLSAETVFPRDTMGEGVFLAKET
                     GILCGISIPPKVYELLGGNIQFEAYKKDGDWIQKGDIIAAVTAPVRTLLSGERVILNL
                     MQRMSGIASQTNFAVKQLDDSAIRICDTRKTAPGLRAFDKYAVQTGGGFNHRNGLYDG
                     VMLKDNHIAFSGGITSAVSTVREKLGHMVKIEVETETAEQVKEAVQAGADIIMFDNRT
                     PEEIKQLVKLVPPHITTEISGNVTLENIHRYKGSGANYLSLGSLTHSVRAFDISFNSK
                     GGIKA"
     gene            24915..26015
                     /gene="nadA"
                     /locus_tag="IBJ56_000402"
     CDS             24915..26015
                     /gene="nadA"
                     /locus_tag="IBJ56_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HAM3416686.1"
                     /translation="MNLLETVEQDTMPTHYKQMTQAEMIARVTEIKAQLGENLFIPCH
                     HYQKDEVVPFADAIGDSLQLAQIAAQNKKAKHIVFCGVHFMAETADMLTTSEQIVTLP
                     DMRAGCSMADMADIHQLTNAWPKLQTLFGDTILPVTYINSTAAIKSFVGEHGGTTVTS
                     SNATKIVSWALEQKERIFFLPDQHLGRNTAFELGIPLEHMAIWNPIKNELEYEGNLDD
                     CKVILWKGYCSVHQHFTVKNIENIRKNNPKMRIIVHPECTHEVVSLADDSGSTKKIVT
                     EINNAAPGTEWAVGTEANLVGRIIQENPDKKIVSLNPFMCPCMTMNRIDLPHLLWTLE
                     AIQNGEQRNQIKVDKQTTKFALKALERMLQLS"
     gene            complement(26339..>26424)
                     /locus_tag="IBJ56_000403"
     CDS             complement(26339..>26424)
                     /locus_tag="IBJ56_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3416687.1"
                     /translation="RELKQQKNKLEEEILFLNEAINLLESP"
BASE COUNT         7729 a         5646 c         4743 g         8306 t
ORIGIN      
        1 aaaaagaagg acttagataa actaagtcct ttctggtatt tattcttgtg aagcgcggaa
       61 ttcatcgtat tgtttttgca tttctttcat tacttttttc atacctgcat catttaactt
      121 cgctttgaat ttttccgtat attcaacagg atcaacggtt cctgtaagaa gtgccggcgc
      181 aaattcatta cacacattgg taatcgacgc tatttcagtt cgaactttag aggagtcaaa
      241 atagaaacct aagcccggtg atgcgactga ttttctattg aactctttaa attgatccca
      301 tttatctgct ggctcatctt catataattt tagaatgaag tgatttccaa gcgcatacgt
      361 tggcatgctg taacgttcca cacgtgctgg tagatcttga attttaccgt catctaactc
      421 tttataatgg gttccttcaa ttcctttatc aactaaatta cgtaaatatt catccgtgtt
      481 aagtaaatca aggaatttca ctgcttcttc cgggtgttgg ctcgtaacag aaacagcttg
      541 aatcgcacca gttacagagt tatttttgat gataggagtt tcagcaattg gctgtgtgac
      601 tactttatat ttgccgcctg tatttttatc ccaaatattt tctgcatatg gttggtattt
      661 ttcgattcgc acaaaccagt tttctttatc gtatgaccac ggatctgtgg aggttgcgat
      721 atcttttgtg acatatcctt tttggtagaa gctatgaagc gattttagga tatctaatgt
      781 ttcgggttgc tcatagaagt tgacgatttt gccagtgtct tcatattgat ttactgcaaa
      841 aggaagaggt actgcattat caatcaaata gtcatatggg aaagctggct taaagtcttt
      901 gttcccgccg attggtgtga tacttggttc gttttcttta attgttttta acattggttc
      961 taaatcgcta aagtttttta ctttcgttac gtccatttta tatttatcga caagattttt
     1021 gttaaaaacg tatacttgtt gctcgccgac ttctttgttc gaaggaacac cgtaaatgtt
     1081 tccgtcaatg gttgcacctt cccaaagtac atcatttaac tcggctttca tattcttgcc
     1141 ttctttatct agatatttat ttaatggcaa gaatgcgcct ttttgtgagt aagaaacgaa
     1201 ttctcccgct gcagagtaag caatatcaaa gttttctccg gagttaataa cggtttgcat
     1261 ccgtttaccg tagtcgcccc agtcaatttg tgtcatttct actttgacgc caattttttc
     1321 ttctgtatat ttatttactt ctttcattac ttcttccgtg tctttttgtg gcgttccaat
     1381 catgtaccat ttcagtgtcg gaacttcatt tgcgtctgcc ttctcatcgc ttccgcacgc
     1441 gcttaaacct agtagcaagc agagtgatgc gatgattact ccccatttct tcttcattaa
     1501 attccctcca tcttttttat tcttttacgc cgccaattgt gagtccacta ataaagtatt
     1561 tttggaaaaa cggataggtg attgcgattg gtaatgtcga aataacaacc atcgccattt
     1621 ttgcaccgtc ttgtggtatg gacttaaacg cgccggcagt ataagcaatt tcagagtttt
     1681 gtcgcatgaa ttctaagttg ttttcaattt tcataagtag cgattgtagc ggcactaaat
     1741 tcggattatc aatataaagt gacgcttgga accagtcatt ccagtatcct agtgtagaga
     1801 aaagcgcgat tgtcgcaagc cctggtaaag aaagtggaac aaccatttgt aaaaagatcc
     1861 gtagttcccc agcgccttca attcgagccg cctcaagtat tggttctgga atagaccgta
     1921 aaaagaacgt gcgcataatc ataatgtaaa aagcattcat tgctagtggt aaaatcatcg
     1981 cccaaatgct atttcgtaag tgcaaaaatt gcgtcatcac gatataggca ggcaccatcc
     2041 cgccactaaa taacatggta aaaaaggcaa taaatgtaaa ttgacgacga tacttaaatt
     2101 gtggtcttga tattgcgtaa gagtaaagag caatcattgc aacactacat accgtaccaa
     2161 ttactgtaac taaaatggta ataccgtatg attgtaatag ttgtcctttc atcttccata
     2221 agtactcata cgcttccatg ctccactctt tgggtattag ttgaaagcca tttgctgcca
     2281 gagatgattc actagaaaaa gaaataacaa taatgtacaa aaatggaaaa atacaaatga
     2341 gcgctaggaa agcgagcata atattcatcg ctacgttcat ctttttccca aaaccaataa
     2401 tgtctttagc tggtttattt tttgctggtt tttccatttc gcctcggact tgttctattt
     2461 cactcactgc ttcaagctgt tctgccaaag cacctcgcct ccttttctaa aataagccat
     2521 attctggatt tatttttttc acgatgtagt ttgtgagtag cactagaata aagccgacga
     2581 tggactgata gaaaccagct gccgcactca tactcatatc tccaagtgac gttaaaccac
     2641 ggtatacata tgtatcaata acatccgtca caggataaag tggtcctgaa tttcgcggta
     2701 gttgataaaa caaaccaaaa tcagagttaa aaatcttccc gacattcaaa atcgttaaaa
     2761 taaccatcag tggcgttagt gcaggaattg ttacatgcct aatttgttgc catttgccag
     2821 cgccatcaat cattgccgcc tcgtagtagg tccggtcaat tccggcaatt gctgccaggt
     2881 agacaatact tccataaccc aagcctttcc aaacattcat catgataagg ataaacggcc
     2941 agtatttcgg atcgttatac caggaaatcg ggtcctgtcc gaatgcaagt aaaatattat
     3001 tcatcagccc actgtcttcg ctcaaaaaac tgaacaagaa atagctgaca actacccatg
     3061 ataaaaaatg ggggaaaagc attcccgttt gataaatttt tgctcctcgc ttatttagta
     3121 agctgttgaa aataatagca agtgctacac caagaaacag cccaacaata ataaatacta
     3181 aattataaag aacggtgttt cgggtaataa taaaagcgtc gtttgtttgg aataggaatt
     3241 taaaattttc aagtcccacc cagtcgctac tcataatact ggataaaaat cctttcccat
     3301 caatcttgta atctttgaat gcaatcactg taccaaacat tggtaagtat gagaaaacca
     3361 ggaaccaaag gacgcctgga agtaccatta aaagccaaat ccgattagct cgaatttgtg
     3421 ataaaacttt tttcaatcca ttcacccctc ttttttgtaa gtgctttcaa catctttagt
     3481 ttatcgtttt tacgtggggt taaatagttg cggatgttta gatttataga caaatattag
     3541 aaataatttt attgatggat ttttcggtag cgatttggtg tttcgcctgt gtgctttttg
     3601 aactggcgat aaaaataagc catatcggta taaccagatt tcccagcgat aatggttaag
     3661 ttatcttttg tttgcagtaa ttcttctttt gcatagttca cccggtagcg atttagataa
     3721 tccgtaaagt gttcgcccat ttctttttga aaaagttgac cgagataaac agcattaata
     3781 tgaaagtcgt taccgagtgt ttttaaagac attccttctg caaaatgttc cgtgatatag
     3841 gaaagcacat tttgaataat ggggcttttt gattcatctg tttgtttttt gcggttatag
     3901 taacgaatag cgtaggctag cgtcgcctct tccaatccct caatactcgt ttcttcggca
     3961 attctcccca tggattcgct taactctttc ggatccgatt ccgccatcat cacaagcagc
     4021 tcattcaaaa tatggagcat ttgatgcggg tcgctttcca gcttgtggtc attccattct
     4081 ttaaaaaagt gctggatcca cgctttaatt tctttttcgt tattcatcac tagaagcttc
     4141 gcgagttgat gttgctttct tttcggacgc caagtatgtt tggtacgttt ttgataggca
     4201 attaggctac caggctcttg cacaagtcgt tctggaagca acctagtaag ttggcgaaag
     4261 gcttgcgggt acatcatttc accttgtact ttttcactga taaacaggta aaaagcttca
     4321 ttcgaaaggc gttttttcac atcttgatga atcgctaaaa tttgttcgga tatcgaagtt
     4381 tgttcggtta ttcctataat tatttcattt tctggcgtaa gtagcataaa tggaaagtcc
     4441 ttccgatatt gttcagaaag atttttccat tcagtcagat tgatttcttt tgttggttga
     4501 atttggatga gaacggcatt ttcctttgaa tttaatatca tatcgtataa tgctagtcgc
     4561 tcttcccatt cttctttgtt aattcgtaaa tttagccaac gccaaatcgt attgtcccgt
     4621 aaaatgtaat acgcttcttc ccttggtatc acactgtctg tcaattgttt tttctctatt
     4681 tgtataaatg tttcttttaa ttcttgttca tttaaaggtt ttagtaaata attttcgatt
     4741 cccgctgaaa gtccacgttt cacataatga aaatcttcaa atccggagag aacaatagtt
     4801 ttagtcgttg gttgccgctt tttccattcg tcgattaatt ctaaaccatt cattacaggc
     4861 atctctatat cggtcaaaag gacatctacg tcttgattag caaataactc taaggctatt
     4921 gcgccatttt tagccgttcc aacaatttca attgattgct caaattctgg aataatactt
     4981 tctaaacctt tgagaataag gggctcgtcg tctactagta caatttttag cattactttt
     5041 ctcctcccgt attttgaggt acttgaaaca gaatgatggt accttcattt gctttactct
     5101 tgattgttaa tcgataattt tctccatata aaagctgcaa tcgtttgttt aaattagcta
     5161 gaccgatgtg gctcgtctca tctttacttt caattgttgc ttgcacttct tttaatttct
     5221 ctgcatcgat tcccgaacca ttgtcttcaa ttctaaattg taaattgtca ttttctgcag
     5281 tgaccgtaat tacgactatt ggattttgat tttctttaaa agcatatttg aaaaagtttt
     5341 caataagcgg ctgcagagca aaccgtggaa tctgcgtatg attgaaacgt ttttcaatat
     5401 tgatttccag cttaattggc tgttcgtggc gcatttccat aaagcggaca tattgtttca
     5461 cgtaattgat ttcttcacct aaagtggtga tttcacggtg attagctgtg tagcgcagta
     5521 gtgttgcaag ttgataaatc atatcacttg tcgctttggc tccttctacg cgtgcgttca
     5581 tcctaattgc ttctagtgaa ttataaagaa aatgaggttg catttgacct tggagtgcct
     5641 tgagccgcgc tttttgttct tccatttcta ggctatagac cttcttcaca taagcatcga
     5701 ggttttctgt catatggtta aaccgctcac taatcatcgt cagctcatcc ccgttattat
     5761 cgaccggaag ctttgcatca agggtcccca tttccacccg gttcatcccg ccaataatcg
     5821 ttaaaatccg cttagaataa cgcctactaa taacaaaatt aatgctaata gaaaaaataa
     5881 ctaataacag cccaatacca aataaagtaa gttcgatgag cggcgcgctg tcatctgtta
     5941 ctcgatataa aaacgtattg tttttcaagc cacttgtttc atcttctgtt ttttgaaagt
     6001 atactttttt gttgtcagca tgaagccatc cttgtttttc aggcgtttgg atttgtttct
     6061 ttgggtggtt ggaatataac tcgactccct tcgtgttttg tatttgaaaa atcgagtttt
     6121 gataatcttt cgtaatccat ttgcttagaa aagtcggatc aatgtaaaga agcagataac
     6181 ccatttgttt taatgtgctt ggatcattaa tcggctgttt cacaactatt ttattttcga
     6241 ttgtataaaa agtcccttgc tttgatgctt cggtggcgat atttgcctcc ccgtatgtat
     6301 caaccgtttc tttccattca cggtaacggc tcggaaatgt ataagagtaa ctcccatcat
     6361 ccgaaatgag ctgcagcgcg ataatatctt catcatacga aaaataagac tgtaaatacg
     6421 tttgcatatc tacagaatag aaatttttac ttttaaaata gttatcgata ttttgctctg
     6481 tgtagctacc gtaatcattt gtcatcgcga tttgaacatc ctgcatcaaa tcgctattac
     6541 ggtaaatatc ttgcgttaaa ctaattaatg ccttttgctt ctccgtaagt gcatcgagct
     6601 gtttattcgc aatggtttcc gctctttgga gattggtatc tagctgaata ttagtatagt
     6661 acttataaat gaaaaaaagt aacaagctca ccgtaaaaag acttgttaaa gaaaaaatta
     6721 acaacatcct tttgaaaacg cgcttgcgtg gtaattcttg tgtcatgctc attcactgcc
     6781 ccctcttctt ttctgattat tgcatactat caccaataat gtaaggggtt acttaggctc
     6841 catttgcttg aagcggtgta aattgatttt cattatccaa taacttggta aaacaccaga
     6901 aataaacaaa ataaaagcag gcattttcga aattaaccat gcgcaaaaaa caagaccaac
     6961 cacaatcata aaggtatttt taaaactagt aatcgcgagc aagaatgctt gcccgacata
     7021 agcacgcgca tttttcattt ggaagtggac aaacactgtg aaatactgca aaaacgcaat
     7081 tcccacgaga aaaagcaaga acattaagaa gaagtataaa atcgtcgacc aaaaaccttg
     7141 cattaattca aaaacaatcc gcaaatccgc atacaggaaa atccctatca gcgcaaaaat
     7201 tgcacccgct aaattagccg aaacaaacac ctgtttataa gtttgccaag cagatttcca
     7261 aactggtaca tctaaatcgc cccgcgccca ttttctcgtt atcgtaaata aagcaaccgt
     7321 tgccggcata aagccaagca caatcccgcc gatcaatacg aggaaaagcc atactaaatt
     7381 tgtccagacg agccggataa tccagtcgct aataactgaa aatttatcaa taagtttcat
     7441 tctttttctc tcctttgata gtaagagaaa gcctgagttt tcgcccagac ttttcttttt
     7501 ttatttactt aatgggctgc cttttacgta cacaccgcac atgcttaaaa caaattcact
     7561 aaacatcgca ttcgaccaag caaaccagtc gcgcgtgaat tcagctggat tcgaggcgtt
     7621 gacaccttcg tgcatataat ccgttccgcc atctccggca atcagcatct ctaaaatggc
     7681 ttgtttttcc gcttctgttt ctgccgttaa tccttcgatg ctgagtgcaa tcggccagac
     7741 ataatgatca ggtgtatgtg gactaccaat tcctgtaagt acactacctt cgacaaaata
     7801 aggattttct cggcttaaaa ttagttttct agtcgcttgg tatgcaggat cagttttttc
     7861 gcaaaaacca aggtatggtg cagcgagcaa gcttggcacg ttagcatcat ccataaataa
     7921 tttacgccct gttccatcaa cttcatacgc gtaaacatct ccgtaatacg gatgcgcttg
     7981 tttcgcatag gtttcaatcc ctgcagcaac ttcttttcgt aaatctgcgc tatctttcag
     8041 caattcttta tcatccgggt aaaacgccgc tgcgatttct tggacgtaat ccatcactac
     8101 aactaaaaac atattactcg gtacaaggta gccatacata catgcgtcat cacttggtct
     8161 aaagccactc caagacatac cagtatagct tacatccgtt ccttttccgt tattatttaa
     8221 ggtatctgat tgacgcacat tttctcgttc aaaacgatac ggactttgct ctgtatgttt
     8281 ttgttcgatt ttaaaaactt cgatgatttg atgcaatgct tttctaaatt cttcggtaaa
     8341 atgaccagta cggttggcac ttttccataa taggtacgct aattgaatcg gatagcaaag
     8401 tgaatcaatt tcatattttc gttcccaaac caggtcggtc attgctgttt tgtcgttttg
     8461 aaatcccgca ccattcgctg atttattaaa agcattcgcg tatgggtcat gcaaaataca
     8521 gttagtttgt aactttacga ggttttcaat aacagtcgcc atttcttcgt cttcttccgc
     8581 cacaattaaa tatggtctaa tttggcttgt agaatcgcgt aaccacatcg ctggaatgtc
     8641 tcctgtaata acaaatggaa gcccctcttc tgtttcttgt aaagtagttg tatacgtatt
     8701 cgtaaaacat ttttcaaaca tgcggtgaag tttttcgttt tctggaaaag tcattttcac
     8761 tttctctatc catttgttaa agcttgctgg tactttgttt gtcatgtatt acactccttt
     8821 taaagtgatg atttcgtttg gactagcgat aaattgtttt ttggcatctc ccgtcgtttc
     8881 ttccaaaata gtcgatttct gccacggttg catcgtctgt agctgttttg gttcacttgc
     8941 ggtttggaag aatcggataa tcggttggtt gtctttagcg agtttaaatg ctgagaagac
     9001 aaatccagcc tctgttttcc attctgcaaa atctcttttt tctgcgagaa tgttttcttt
     9061 cgttgctgat ttgtgttgga atgcaaaaat aggagtcaag catgcgttta cttgtgctgg
     9121 tatggtgcta tttgcaacat cagaatcatc tgttaggaaa acgtgaaact ctgctgtaat
     9181 ctctcggtgg cattccgctt catatgccgg gaagtcaccc caatcgccta tttcagatac
     9241 tgcgcgaagc aacgttaatt ctagtttgtc accatgttcg cttacttcat attctggtaa
     9301 accaagactt gcgacaacga tatttccact agcaacaaag ccttgttttc ggttatcttt
     9361 agcaggattt gtccattctt tgacttgttt attcgcgcgt gttactactt caaaaacact
     9421 tcccacttga tgtgtttctg tttgttttcc agtcgggaaa agcacgcgga gtcgatggtc
     9481 atctacgttg ttatttagtt tcacgcggat agttaattgt ttatcgtgtt tatttagcgt
     9541 taattctgtc gtgattttaa atgtagtaaa attttccgag cgctccgact gccggtcagg
     9601 atgccatact aggcgacgtt tttcttccgc aaaggcggaa cttgcgcttt ctggtatttc
     9661 aatttcatgg tttatttcga ttgttttgcc gagtttatcc tctcgttgta ctcgaattgc
     9721 cggtttggaa tgaagtgtat ttattcgcaa gttatcgccg gtttctttaa acatatattc
     9781 attaccgatg tcgcccgcat cctcatatgc cccaacacct gcaatttcta tcgctttttc
     9841 tttatctaaa atcgtatacg tcccattcgc cgcaacttcc acttttaaaa agcgattttc
     9901 taaaaacaaa tcttgtgttt ggttcgctga ttcattcacc aaatcaaccg gatgcgcgta
     9961 aattgtttca taaccaaccg ctggcaaatt ttccacggca aaggttagtt tgtactttct
    10021 cgcaaaataa gaatcacgga atttccgttc tggtaaatcg taattaaatc gaatgccaag
    10081 cgactcaaca acaaccggaa tttcctcgcc agtacttgtt tctaatcgaa aactttgctc
    10141 tggaagtttc gctaattcgt ctggtattaa ttcaaaatgc atctcagaaa aatgaattgc
    10201 atctgtttca agttcgagtt ctatggatct cgttgcttca aggccacctg catgaaatac
    10261 cgtaatagga atgcccgctt cattcgttgt aatttgttcc gtgatttgac gcgcggcgtt
    10321 ttgaataatt gccatagtcg cctgttcgac tttttcaaaa cgagcttcca tttcacggtg
    10381 cacctcatcc aaactacatc ccgtgatact atcatggatt tgattttcca taagtaattt
    10441 ccaagcataa gctaagtatt catgtggata ctggacaccg gcttctgtcg ccatcacgga
    10501 aatcggttca gccaaacgct ctaataaacg ctctattttc gcatttgctt gttttaagta
    10561 aatacgtgaa gatgctgtgt tggcgagtgt agaccatcca tctgattgtt ggctcgttaa
    10621 ttctccgtga accgtttgta atttttcagg agcaagacca gctttgacag cctcttgata
    10681 tttttcaaaa tggctatgga taaactccac ctcaggataa agttcccgtg ccacttccaa
    10741 tgcttccgct aaatcagttt gcactggctg atgatcacag ccgttcataa ataaccattc
    10801 atccgtcgat gcgaaccgtt ccacatccgc taatttctta tcccagaaaa cttttgcggc
    10861 ttctttatcc accggaattt cattgccatt ggaataccaa tttgcgagta aaatccctaa
    10921 tactttcgac ccgtccgggc tttcccaaaa catctccgaa tatttcgagg caaaagcgct
    10981 atcaaaaact tggttgttaa agccggttgg attgactcca cgaccgaaaa cgaccgtatc
    11041 aaaaccagct tggcgcatga gttgtggcac ttggccatat aaaccaaacg tatcaggaaa
    11101 ataaccaatt ttctctactt gaccgaattc ttctgccatt tctagaccat actgcaaatt
    11161 acgaatattc gcttctccac ttgtcaaaaa agcatcttgc aacatgtacc acggtccgat
    11221 tcgcagtttt ccgtccgcaa ccagctgctt cattttttct cttttagcgg gtttcacagc
    11281 caaataatct tctaacataa tcatttgccc atccatatga aaatgatgaa atccatcttc
    11341 cttatcaagt aatgcttcta cgtcgtccat aagtgtaacg agcctaaatc tcaaactttc
    11401 cagtggtaaa aaccattctc tatcccaatg agaatgagaa ataatatgcg ctttctttct
    11461 agtcattttg cccctccaaa tatccttttt gtattcgctt tcaagctaag tatagtaagg
    11521 gctaaagtga attgcaatgc taggtgaaaa actactatga ataatccatt ttcccttgat
    11581 ttgtccatta caagaaagcg taatccttcc cactctaaga gaatctccca gcatacccaa
    11641 aaaaagccaa attgacatct tttgccgcta tgatatattg aaaccgttct agacaaaata
    11701 gaaaggatat gagtatacat atgtttttca ctaaagataa actacgaggc cgtctggatg
    11761 aagtcgcgct ttatcgttac gaaaaaactt atcctatccg taatttccaa gcagccgagg
    11821 atatggatgg agaaatcgct gcacgaccaa ataacgtctt gtatgataac gaattgacta
    11881 tcggggaaaa ctggtcaggt agggaccgtt atgtctggct caaaacaacc attacttttc
    11941 cagacaccaa aactgacacg cgcttgattg gctactttga ctttgggaat accggcgacg
    12001 gccacaattc cggctttgaa tcactattat ttgttaatgg ggaaccatat caaggcgtcg
    12061 atcaaaatca ccgcgaagtt cttttcccag atagttttgc tggaaaaaag gtggaactgg
    12121 tcttccgttt atggtccgga ctggaaggcg gcggcactcc tactatccag acacaccagt
    12181 taaaagaagc ctttattgga tacttaaatc tcgtcattga tgatttgtat ttcacgagta
    12241 aagcaacttt aaaaacactc gaccaactcg aagaaaaaaa tccaacccat gcgccgctcc
    12301 tccaagcgat taatcgcgct taccttgcaa ttgattggag tacaccagga tccgaacaaa
    12361 accttgcctc gatggcaaca gccaaccaaa tcttacaagc cgcactggaa aaaatgccga
    12421 aaaattttcc tatcaaagtg gcggctgttg ggcatacaca tatagatgta gcatggctat
    12481 ggcgcttaaa gcatactcgc gaaaaagccg cacgatcatt ttcgactgtg cttcatttaa
    12541 tggaagacta tcctgaatac ttatttctcc aatcgcaacc gcaactttac gcctatatca
    12601 aagaagatta cccagaaatt tatgcgaaaa tcaaaacgaa aattagcgaa ggaaactggg
    12661 aagctgacgg tggaatgtgg cttgaagcag attgtaatat tcctagcggt gaatccctcg
    12721 tacggcaaat gctctacggt cagaaatttt tacgcgaaga atttggtaaa ccttctagtt
    12781 ttctatggtt gccggatgta tttggctata gctgggcttt accacaaatc cttcgtaaat
    12841 caggcattaa gacttttatg acaaccaaaa taagctggaa tcaatataat cgtatgcctc
    12901 atgatacgtt ccagtggcgc ggaattgatg gtacagaaat tttgacccat ttcatcactg
    12961 caccagaaaa aaatagccgc atttcaacct ataatggcaa aatgacagca cgagaacttg
    13021 ttggtctttg ggacaaatat caagataaag aggtaaacca agaattacta cttgcttacg
    13081 gctacggaga tggtggtggc ggtgtgaacc gagaaatgct agagatgcgc cgtcgttatg
    13141 atacgatgcc aggaattcct gaagtaaaac caaaaagtgc tacttcttat ttcaacgatt
    13201 tacacgaaac gataaatacg acagaccaat atgttcatac ttggaacggc gaactttact
    13261 tcgaatatca ccgcggaact tatacgagcc aagcctttac gaaaaaaatg aatcgaaaaa
    13321 tcgaactcgg cttacgaaat agcgaatggc tttccgtttt agcaaatcta aaacaaggaa
    13381 cgtcttaccc aactgaaaaa ttagcaggca tttggcaaat tttacttcga aatcagtttc
    13441 atgatattat tcccggctct tccatcaaag aagtttatga cgacgctcta attgagtaca
    13501 cggaagctat gacggaaaat aatacgttaa tttctaatca attgaccaat ttaactacag
    13561 atgccgatga aaaaataaca ctttggaata gttccacttg gtccagaccg cgatacatcg
    13621 aaatttcacc cgacaatcaa tcgaaccatt tagcctttta tgatgaaaat aatgctccac
    13681 tgcctgcgca aaaattggta aataatgcct ggcttatcca gcatccaaac atacctgcgc
    13741 ttggtgctac aactatttct gttaaagaaa cagcaaacat tttagaacaa ccatcttttc
    13801 actacaaaaa taaccaattg gaaacaccct tctatcaaat caaatggaat aaagccggac
    13861 aattcacgtc catttttgac aaaaaaaata accgccaagt aatagcggaa aatgcgcgag
    13921 gtaatgtatt tcaattattt gaagataagc cgatgtggca tgacgcctgg gatatcgacc
    13981 tattctatca agaaaaacaa aaagaaatca gcgcgctaga ttcagttgaa ataaccgaga
    14041 acgggccact ccaattcact atgaagcaag tgctacattc cgaaaaatct caaatcactc
    14101 agtggattca tttttatcac gagagccctg aaatcagatt tgaaaccgag gtcgactggc
    14161 gagatcgtaa ccagttgctt aaagtcgcct tccctgtcgc tgtgcatgcc agtgaagcta
    14221 gctatgacat ccaattcggg aacgtcaaac gcccaacgca ctggaataca agttgggatt
    14281 atgctcgctt tgaaaccgtt ggacatcaat gggctgatct ttcggagaaa aattacggcg
    14341 tcagtttgtt aaatgattcc aaatacggct atgatattaa agattcaact atccgcctta
    14401 cacttctgaa agcagccggt tatccagatc cagatgccga tttaggaatc caccaattca
    14461 cttattcgct ctatccacat caaggtgatt ttttagacgg ggaaacagtt caagcagcat
    14521 gggaattgaa taatccaatt ttcacttcca agggggaaat tgaaactttt tctcttttcc
    14581 aagtgaccaa tccttacgtg atgattgata gcattaaaca agccgaggac ggtgatggta
    14641 tcattttacg attgcatgaa tttgcgggaa ctcacggcga agtaacaatc acaagtggtt
    14701 acccgattac ctcaatcaca gaatgcaact tacttgagga aaacgaaaca tcgctttcca
    14761 atccgacctt tgcagtagct ccatttgaaa taaaaacata ccgaattcat ttagcataaa
    14821 aaaacacgca gcaaggcttc tccctaagaa gtccgctgcg tgtttttatt agtttaacgt
    14881 gaacagatta aagtttagta actttttctg cttgtgggcc acgttggcct tcaacgattt
    14941 caaattcaac gctttgacct tcgtctaaag ttttgaatcc ttcaccttcg atagcgctga
    15001 agtgtacgaa tacatcatct ccgccttcta cttcgatgaa accgaagcct ttttcactgt
    15061 taaaccattt aactgtacct gtttgcatat ttcacaaacc tccaaaaatt ttcttaatat
    15121 gtttctttta ctaacgaaaa agatgttaac aacaagctaa tcattttttc aattacaaaa
    15181 ttcacatatt agcaaagata ctcactccac atcaatatcc ttgataataa gcaaattagc
    15241 tactatcaac acttatatat taacgccaac gagcaaataa atcaagtgaa aaagccgtac
    15301 ggttacaaaa tagagtattc agtttactat ctgaaaaacc ctgctataag ctaattctta
    15361 taacagggtt tttatattat tctgtaatac ttttatcttt aatccgccat ttcacaagta
    15421 aattatgtaa tggttttcgt actaagaaat aaacgcctag tgagataaat accgatgctg
    15481 taccaaggaa aaatccacca agtacatccg tcgggaaatg cacaccaaga taaacgcgtg
    15541 tatacatgac aaacaggata aaaccataac cgataatacc gataacgatt ttttgccaca
    15601 tttttggcac tgtgaaaatc aagaacatcg ctgcaagacc ataaaaaaca gccgttgccg
    15661 tcgcatgtcc acttgggaaa ctaaagcctg actcgcttac taaccagttc acgctagctg
    15721 gacgcgtacg accaaccaaa cttttcaaga caagatttaa gactactcca caaacaagca
    15781 tcgttccacc aaaccaaagt ccgacaacaa attttcgtaa aaagaataaa ataagaacga
    15841 ctacgatagt caaaataatt gtcgtttctg cgcttcctaa agtagttaga aatttaacaa
    15901 tggctgtttt atccggttga atgccgccgc ggattttttc aatccagctt aagtcaaaac
    15961 gtgctaccca gttactttct gttgcgatag cggaagcgat agtaataaat aaaataaggc
    16021 aaaatccgcc aataacgaat aacggtgttg cttttttacg atttgtattc atggttaact
    16081 ccttttcatt cggttgtttt tagaaattct tttacttctt ttacaagcgc ctgatactga
    16141 gcttgttcag ctgtcgcttc atttgtaagc tctgtaacga catcattttc ataacgaacg
    16201 gaacctttgc taacaaaagt ggcattgcca atcagttgta gcgaaatttc accagcagca
    16261 tcttttttcg cagttacttg cactcttccg ccatcattat aaacatttag cggcgtttcc
    16321 aatatatcat tatctaacat ttttttaatc aaactacaag ccgacatcgc tgttccacat
    16381 gcattcgtaa aaccgacgcc gcgttcaaaa gtacgcacat aaatagcatc atcgcttaaa
    16441 cgtttcacaa agcttacatt cacgccatct gggaaatacg gattttcgct atttaaataa
    16501 cttgctaatt tttcttgttt atcggaatct agcacagctt ggtccacaaa tgtaatcaaa
    16561 tgcggattag gaacagaaac agcagaaaaa gcgagttctg catcaagttc tgggataact
    16621 tgattaaata atttttccac gcctacatgc atcggtaatg tttctgctgc aaatttaaca
    16681 ggagaaattt ccacttgata ggttggaata tcaaaaccaa gcgaagttgc ttttttgaca
    16741 tcaagtatcg ctttcatagt ttctactttt gcatctgtca aagcatgttt ctcaagtaaa
    16801 tagcgagcta ccgttcttaa gccattcccg cacatcgaag caattgagcc atctgaatta
    16861 acgacacgca tttggccaat tggtccaact tcactgcttt ttgtgacata taaaattccg
    16921 tctgccccgc caagcgagtg ctttctatcg caaagcttta tcgcaaaatt agcacgtttt
    16981 tcatccgacc attctgtgat gtgattttcc tcttcatcaa ctaagaaaaa atcgttttgc
    17041 gaaccatgta cttttgtaaa gtgaattgtt tccattacgt caagcaacct cctctatttg
    17101 gaattacgtc tataatacca catcttaaat taaaaaagct tggggaacct ccttttgaaa
    17161 tgagtaggat tttccccaag cgagcattaa gcttcgtagt gttttacaac aatatccgca
    17221 cagcggccac acagtgttgg atgttttgga tttacgccta catctttttt cactacacgg
    17281 caacgttcac aagtttcgcc ttctgctacg gtaatttgaa cagctacttg atttgatttg
    17341 aatgcagatt ctggtgcatt ttctaaacct tccacaagtt caaagtcaga aacgataaac
    17401 agttgtgcaa aatcgccttc taaagaatca aatagtgttt tcgcttcgcc gtctacatat
    17461 aaagttactt tagcaagcat tgatttaccg attaattttt cgttacgagc gaattctaac
    17521 gctttttgga cgttatcacg gatttgcatg aatgcgtccc atttcgctgt aatttcttcg
    17581 ctatccgcta atactttaac ctctggcaag tcttgcaagt gaatactttc cacgccttca
    17641 ccaatcaagc tattccaaac ttcttctgtt gtatgcggta aaattggagc aagtaatttg
    17701 gttaacgtaa caaccgcttc ataaaagaca gtttgcatag cacgacgatc atgactatca
    17761 gccgcttcga tgtaaacaac atctttggca aagtccatat aaaattggct taattctact
    17821 gtacagaaat tattgatttg gtggtaaata gtagagaatt cgaaagcttc atagttatcc
    17881 ttcacatttt tcactaaatc atttaattta attagcatat atttgtcaac ttcacgtaag
    17941 ttttcataag aaacggcgtt agtagttgga ttaaagtcat taatatttcc tagtaagaaa
    18001 cgcattgtgt tacggatttt acggtatact tcggatactt gttttaagat ttcatcacta
    18061 acacgaacat cagcttgata atccactgaa gcaacccaaa ggcgaacaat atccgcacca
    18121 agttgtttaa ttactttgcc tggaagtaaa gtatttccaa gtgatttact cattttgcga
    18181 ccttccccat ccagtgcgaa accatggctt agcacgttac gataaggcgc ttcaccagtg
    18241 attgctacag cagttgttaa ggatgagttg aaccagccac gatattggtc agagccttcc
    18301 atatataaat cagccggacg acttaattct gggcgagcat tcagcacagc ttgatgacta
    18361 gaacctgaat caaaccaaac gtccataata tcggtttctt ttgtaaattc tccatttgga
    18421 ctacctggat gcgtaaagcc agcaggtaat aaatctttca catcgcgttc aaaccaaaca
    18481 ttcgaaccat gctcacggaa aagttcagaa atgtgattaa ttgtttcgtc tgtgataatc
    18541 gcttccccat tttccgcata gaaaatcggt agtggaacgc cccatgcacg ttgacgagaa
    18601 ataacccagt cgccgcggtc gcgaaccata ttgaataaac gtgtttcacc ccaagcagga
    18661 gtccaattaa cacctttaac agcagcgagt aaatcatcac ggaatgcgtc aatcgaagca
    18721 aaccactgcg ctgttgcacg gaaaataact ggttttttcg tacgccaatc atgtggataa
    18781 gagtgagtga tgaattccat ttttagtagt gcgcccactt cttctagttt ttctgtgacc
    18841 attttgttcg ctgtatcgta aaatacgcct tcaaatcccg gtgcttcctc tgtgaataca
    18901 ccacgatcat ctagtggagc aagtacttct aaatcgtatt ttttcccgat taaaaagtca
    18961 tcttccccgt gtccaggagc cgtatgaacc gcaccagtac cggcttcagc agtagcatgt
    19021 tccccgttca ttactaagga atcacggtca tagaatgggt gtttagttac aacgcggtca
    19081 agttcagaac cacgaactgt tttcactact gtcgcatctt caaagcctag tttttcgcgt
    19141 aagcttggta aaagtgcttc tgctacaaca tatttttccc cagcggattc aattactaca
    19201 tagtccaaat cagggttaac agtaataccc atgtttgcag gaattgtcca aggagttgtt
    19261 gtccagataa cgatattcgt tccttcatct agtacacctt ttccgtcagt aactttaaag
    19321 gcaacaaaaa tcgaagcaga ttttttatcc tgatattcga tttctgcttc tgccagcgca
    19381 gattcactag aaggagacca ataaaccggt tttttacctt tgtaaatgta accttttttc
    19441 gccatttcac cgaagacttt gatttgctct gcttcgtatt ctggtaaaag tgtaatgtaa
    19501 ggattttccc agtcaccgtt aattccaagt cgtttgaatc ctgtacgttg accgtctact
    19561 tgcgtcattg catattcggc acatagttta cggaattcag caatagacat ttctttccgt
    19621 ttaacgcctt ttttggcgat agctgtctca attggtagtc cgtgtgtgtc ccaacctgga
    19681 acatacgggg agctgaagcc agccattgat ttataacgga cgataatatc tttgattgtt
    19741 ttgtttagag cgtgacccat gtgaagctca ccgttagcat aaggaggccc atcatgcaaa
    19801 atgtacgcct tgcgtccagc atttttttct tgaatcttct catatagttt ttcttcttcc
    19861 cattttgctt gccattcagg ttctttgttt ggcaggtttc cacgcatcgg aaaatctgtt
    19921 tttggcatta ataacgtatc tttatattcc atactctatt ctcctttaaa tctttatttt
    19981 taaacacaaa aaaatctctc ccaaaaaagg gacgagattc gcggtaccac ccttgttgac
    20041 atgcaatttt gttgcttgcc cacttcatta atgccataac gctggctcgc gctaacactt
    20101 actcaagcga ttgctttttc gggttagaac taaagagtga tttctatttt ttagaggata
    20161 gttggtctcg caccatttac caactcgctt catatccttt gtctaaaaaa tttacttgtc
    20221 tcttataatc gtttttaacg ttcttctgat tcagcagctt cgacttcttt aatagacgct
    20281 aattctgttg catctacatc gtaagccatc atttgctgcc aatcttcact tttaattaaa
    20341 tccatttgcg cttctactaa catacgcaga cgctcgcgga atactttaga ttgacgtttt
    20401 aagtcttcaa tttcaatcgc gattttacga gctttagaaa gtgagtcgct taaaattcgg
    20461 tctgcatttt tttcagcttc acggataata agttttgctt ctttttcagc ggaagctttc
    20521 acttcttcgg cagctgtttg tgccacgatt aatgatttgt ttaatgtttc ttcaatgttt
    20581 gtaaaatgac ctaaacgttc ttcactatta tttaaagtgt cctcaatacg ctttttctct
    20641 ttaataactt gttcataatc tttaatgatt tgatcgagga agtcatttac ttcgtcttcg
    20701 tcataacctc taaaaccacg ggtaaactct ttgttatgta tatccagcgg cgataatggc
    20761 atatctagca cctccatacg actatttgtt tataaatacc taacatacat tctaccatag
    20821 ttactagctt tttcctagaa tttatattga aaaatggtta gattaaaaat ccagctttat
    20881 ctagcgcctt aatcgcttgt tctaattgtt ctttcgtatc tgcttcaatc gtatgtaaat
    20941 gtgttccatc cgttaaacca gacagcattg ttgctcctgt tgtttgcaat ttccgcacaa
    21001 atttctctac atcaaaacgg ctttttaaat gtagtgaagc ggtgatttcg ccgtatattg
    21061 gatgatccac aatcacatca ataatggaaa caccgtgatc taccaaaata tttagttcct
    21121 cggcagcttg ttctttcgta tgtttcacgg caataacgcg cctttcccct gtataacttg
    21181 tttctttcgc ataaatatag ccttgtgggg tagccataat tggttcattg ccagctttta
    21241 acaaagaaat atcttgaaca atcacttggc ggctaacatt tgttttctgt gctaattgat
    21301 ttccagaaat tggcgcctcg gcttctttta gccattttaa aatcatttgc ctacgcgtat
    21361 ctcctaatat ttttttcatc ttatcacctt tttcgtaata atttatcgat ttcttcttta
    21421 aaaataatac tatcgtttaa ttcattttct cttccaaaag ataagcggat aaaacggttt
    21481 gcttcttctg ttgtttttcc agtagcgatt aatgttctgg acggagctaa atcacgtaaa
    21541 ctacatgcac ttgtcgtcga gatttgaata tctgcttcgt ttaaagcaag taacgcttcc
    21601 tgaccttgca tatttggcaa agtaagtcct aaaatatacg gcgatgtatt gggtccacct
    21661 tccacttcta ctcgcgcttc taatgtgtcg caaatcgcag cttttagttt catagctcta
    21721 atcgcttctt gttctctatt ttctattata tcataggcgg cagttgtaaa ggcagcaata
    21781 gctggaacat ttactgtccc cggtctaaag ccaaattcat gatgtacatc tggcaaaact
    21841 gcctgcaaag gagaatctgg tttcataaaa agtattcccg ccccttttgg tccataaatt
    21901 ttatgcgatg aaatactaaa actagtggca tcacttaaat ctaaatcaat ttttccaaag
    21961 gattgaacga tatcggtatg aaaaaagaca cctgcttttt tagcaatatg agctagttcc
    22021 gcgattggtt ggatggttcc gatttccgaa ttaacatgtt gaataataat aagccccgtc
    22081 tcagcagaaa tcattttttc taaagtagct ggatttactt gcccaaacga atcaactggt
    22141 aatactttaa tccgacactt ccccgcttgt tcgagtgcca ttagttgctg ccaaactgaa
    22201 gcgtgttcta gcggacttac gagcacttct ttcttatcag ttgtatggat tagcgtttgg
    22261 atggcaattt gattactctc tgttccacca ctcgtaaata aaatcccgcg gtttggaact
    22321 tgtaataact cagaaaaact ttcccggcat ttttctaaaa gggccgctga tttcgtccca
    22381 gcatcatgta aactctccga attagcaaag aattctcgcg atgcatccat aaaaacttgt
    22441 aaagaagctt cactcatttt cgtagtagcc gcatggtcaa agtaaatcat ctctttatct
    22501 ctcccttaaa attttatact tgaatttagt ttgattttat gtgattatag atgacaagac
    22561 atctgtatat tcattaagaa gtatacaatt aatcgaacct actatgcaag aggtggaaac
    22621 aatgacaaaa gaacgagtga ttatcattgg gagcggtatc gcaggttgca ctgctgcctt
    22681 cagattaatg cacgactatg atgtgacaat aatcacaaaa ggtctcaaag aagaaagtaa
    22741 ttcgatgctc gctcaaggcg gtgtcgcagc agctgtgtcc aaaaacgata ccccgaaaaa
    22801 gcattttagc gataccttcc aagccggttg ttttcataat aaagttctcg cagtaaatca
    22861 actcgttacc aacggtccaa tcgttatcca aaaattaatc gcagaaggga tgacttttga
    22921 cgaacaaaat ggtgaacttt cgcttggttt agaaggcgca caccaattgc cacgaatttt
    22981 acatactggc ggtgatcaaa ccggcaaatt tcttactact tttttacaag aaaaattaac
    23041 aaacattcac tggcaagagc aaaaaatggc tatcgaaatt ataaaacaga acgattcggc
    23101 tatcggcgtg cattgtttag ataaagaaaa tcgactacat acttattacg gagaacatat
    23161 tattttagca agcggcggac ttggacaact ttttccagtt acgacgaatg cggcgacaat
    23221 ttccggtgat ggtttagcac tggcttaccg ggctggtgct aagctaaccg atatggaatt
    23281 tatccaattt catcccactc ttctctttct aaacggacgt tgtcatgggc ttatttcaga
    23341 agcggtccgc ggtgaaggag ccaaacttat tcgcgcagat ggttcggcgg taatgactga
    23401 tgttcacccg agagctgacc ttgcgccgcg cgatattgtt gctgcgacgc tatttgcaga
    23461 aatacaagat ggcaatgagg ttttccttga tatcacgcca attcctaatt ttgaagaacg
    23521 ttttccagga attactgcta acttggatgc atatcacgtc ccgtttcgtg aaacaaagcg
    23581 gattccggtt catcctggcg cacatttttt aatgggtggt attcgtaccg acctatcagg
    23641 taaaacgaac attcccggtt tgtatgccat tggtgaggtt gcaaatgcag gtgtgcacgg
    23701 cgctaaccgt ctcgccagta actccctcct tgaaacgctc gtctttggtg aaaaagtggc
    23761 tgaatacatt ctcacgcaaa aaacaaacct aatagaccat ccagaaatcc ctctttcgaa
    23821 ccaaacccga acaccccatt taccagataa acaattactt caagagaaaa tctgggaaac
    23881 gcttggcatc acaagaaaac cagaaaaaat caccgaattt cttcattggc ttactgattt
    23941 cgattacgca aatcacactc gagaaacagc ggaaattagc cacatgctta tcaccgcaaa
    24001 aataatcgcc gaaagcgcgc tcaaacgaac agaaagtctc ggcgcacatc gaatattaaa
    24061 aggagtaata aaatgaattc catacttatg aatcaagcaa ttcaagcatt tttactagaa
    24121 gatatcggtc aacatgactt aagtgcagaa actgttttcc cccgtgacac aatgggggaa
    24181 ggtgttttcc tagcaaaaga aacaggtatt ctttgtggca tttccatccc accgaaagtt
    24241 tacgaactgc tcggtggaaa tatacaattt gaagcttata aaaaagatgg tgactggatt
    24301 caaaaaggcg atattatcgc ggctgttacg gctccagttc gcacgttact ttccggtgag
    24361 cgggtcattt taaatttaat gcaacggatg agtggtatcg ctagccaaac taattttgct
    24421 gtcaaacaac tggatgattc cgctattcga atttgcgaca cgaggaaaac agcgcccggt
    24481 ctgcgtgcct tcgataaata cgcggtacag actggtggcg gctttaatca tcgcaatggt
    24541 ctatacgatg gtgttatgct aaaagacaac cacatcgcct tctctggagg tattacaagt
    24601 gctgtatcta ctgtacggga aaaacttggc catatggtaa aaatcgaagt ggaaacggaa
    24661 actgctgaac aagtaaaaga agccgttcaa gccggcgcag atatcataat gtttgataat
    24721 cgcacaccgg aagaaatcaa gcaactggtt aagctagttc ccccgcacat tactacagaa
    24781 atttccggta atgtcacttt agaaaatatt catcgttata agggttctgg ggcaaattac
    24841 ctttctttag gctccttaac gcattccgtt cgtgcatttg acatcagttt caatagcaaa
    24901 ggaggaataa aggcatgaat ttactagaaa cggtcgaaca agatacaatg ccaactcatt
    24961 ataagcaaat gacgcaggcc gaaatgattg cccgcgtcac ggaaattaaa gcccagcttg
    25021 gcgagaatct ctttatcccc tgccaccatt atcaaaaaga tgaggtcgtt ccatttgccg
    25081 atgcgattgg cgattcctta caattagcgc aaattgctgc acaaaataaa aaagccaaac
    25141 atatcgtttt ttgcggtgtt cattttatgg cagaaacagc ggatatgctt acgacaagcg
    25201 agcagattgt tactttgccg gatatgcgcg ctggttgttc gatggcagat atggcggaca
    25261 ttcatcagct aacaaatgct tggccaaaac tgcaaaccct tttcggcgat acgattttac
    25321 ctgtcactta cattaattcc actgccgcaa ttaaatcctt cgtcggtgaa catggtggga
    25381 ctacggtgac atctagtaac gcaacaaaaa ttgtctcatg ggcgctcgaa caaaaagagc
    25441 ggattttctt tcttccggat caacatctag gtcggaacac tgcgttcgaa ctaggcattc
    25501 ccctcgaaca tatggcaatt tggaacccga taaaaaatga actggaatat gagggcaatt
    25561 tggatgattg taaagtcatt ctgtggaaag gctactgctc tgttcaccaa catttcaccg
    25621 tcaaaaatat cgaaaacatt cgtaaaaaca atcctaaaat gcggattatt gttcatcccg
    25681 aatgcaccca tgaagtcgtt tctttagcag atgattccgg ttcaacgaaa aaaattgtaa
    25741 ctgaaataaa caatgccgca cctggcacag aatgggcagt cggtaccgaa gccaatttag
    25801 ttggtcgcat tatccaagaa aacccagata aaaaaatcgt ctcgctaaat ccgtttatgt
    25861 gcccttgtat gaccatgaat cgaattgatt taccacattt actctggaca ctagaagcta
    25921 tccaaaacgg cgaacaacga aaccaaatca aagtcgataa acagacaacc aaatttgcct
    25981 taaaagcctt agaaagaatg cttcaattaa gctaataaaa aaacgaaagc agcaactgct
    26041 ttcgtttcag ctcctttata aaagcttcta tttgtcaatc taaattttaa tctgtagaac
    26101 ttactcgagc atatgctact atcatgacta aaaagcaact cttttcacaa ccatttaata
    26161 tccaccctaa ctatacattg aaaaaaatgc atttacactg atggttttgt gtatattttg
    26221 ggtataccct ttttttacat gaatcagctg taccaaaata taaaagcaaa aaagagaaga
    26281 tgaaattatc accctctctc tcatactacc tatcaatcaa tacttaaaat catccctctc
    26341 aaggactttc caacagattg attgcttcat ttaaaaacaa aatttcttct tctaatttgt
    26401 ttttttgttg ttttaattct ctta
//
LOCUS       DABQVC010000014        26031 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.014,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000014 DABQVC010000000
VERSION     DABQVC010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 26031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26031
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.014"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..480)
                     /locus_tag="IBJ56_000404"
     CDS             complement(<1..480)
                     /locus_tag="IBJ56_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase"
                     /protein_id="HAM3416688.1"
                     /translation="MNEQELKQMIEGILTEMSGGKTTDTVAAAPTKSVVETVITEGSI
                     PDITEVDIKKQLLVPEPADREGYLKMKQMTPARLGLWRAGPRYKTETILRFRADHAVA
                     QDSVFSYVSEDLVKEMNFIPVNTKCQDKDEYLTRPDLGREFDNEMVEVIRANTTKNAK
                     "
     gene            complement(500..1864)
                     /locus_tag="IBJ56_000405"
     CDS             complement(500..1864)
                     /locus_tag="IBJ56_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HAM3416689.1"
                     /translation="MILKTNLFGHTYQFKSITDVLAKANEEKSGDRLAGVAAESAEER
                     VAAKVVLSKMTLGDLRNNPVVPYETDEVTRIIQDQVNDRIHDSIKNWTVEELREWILD
                     HKTTDADIKRVARGLTSEIIAAVTKLMSNLDLIYGAKKIRVIAHANTTIGLPGTFSAR
                     LQPNHPTDDPDGILASLMEGLTYGIGDAVIGLNPVDDSTDSVVRLLNKFEEFRSKWDV
                     PTQTCVLAHVKTQMEAMRRGAPTGLVFQSIAGSEKGNTAFGFDGATIEEARQLALQSG
                     AATGPNVMYFETGQGSELSSDAHFGVDQVTMEARCYGFAKKFDPFLVNTVVGFIGPEY
                     LYDSKQVIRAGLEDHFMGKLTGISMGCDVCYTNHMKADQNDVENLSVLLTAAGCNFIM
                     GIPHGDDVMLNYQTTGYHETATLRELFGLKPIKEFDQWMEKMGFSENGKLTSRAGDAS
                     IFLK"
     gene            complement(1906..3327)
                     /gene="eutA"
                     /locus_tag="IBJ56_000406"
     CDS             complement(1906..3327)
                     /gene="eutA"
                     /locus_tag="IBJ56_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase reactivating factor
                     EutA"
                     /protein_id="HAM3416690.1"
                     /translation="MTETILSVGIDLGTSTTQLILSELEIQNMASSFTVPRIVISDKR
                     IIFRSEILFTPILADNLIDVEAIRDFVTKEYANAGIKKEEIGMGAVIITGETARKDNA
                     SNVLDAMSGFAGDFVVATAGPDLESIIAGKGAGAHTYAKENNTSVVNLDIGGGTTNLS
                     LFDRGELIDTACLDIGGRLIKVDRETRKITYIAPKIQALIEKRGYPVKLGETTSPENL
                     QPVLGEMVELLKNSVGLGAPNDFYETIITNKGLKFLTEIECISFSGGVADCISTGALS
                     DPFRYGDIGLLLGKAIAESSLMTEKKYIESVETIRATVVGAGSHTAEISGSTITYTEK
                     IFPVKNIPILKLAKQEEDENMAEVIKEKLSWFKIENEMEHIALAIEGENSPSFQQVTE
                     YAKAICEGMKEPIALGHPLIIITWHDMAKALGQSIFGHLPAGHPLICLDSVKVDNGDY
                     IDIGKPVADGKVLPVVVKTLVFN"
     gene            complement(3417..4874)
                     /locus_tag="IBJ56_000407"
     CDS             complement(3417..4874)
                     /locus_tag="IBJ56_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein"
                     /protein_id="HAM3416691.1"
                     /translation="MTKTIREMCLRYTDLSEHDIEELIHTAKSLSVSAMYQDVDVFID
                     VYNKLTSEALVIHHTPPKTTKSLYKNKVVGETALRSNEPGVLRTLETGMNSNDLLAKT
                     QENVLIRQKVYPIRNKQRVIAVLILENDISAEIKAHFEIDNEETAYRDVSTTLSAMSK
                     LTDSITDQLDDAILIFDRNGILQQKNCAADQYYERLGYMEDIQGMHYDNLSLDQMMFD
                     AIMYQIETGKQPIQLKKEVVIAGNYFIMKQIFVKEEDEQECRFILILHDITDIKVKEA
                     EIVSKSVAIREIHHRVKNNLQSVVSLLRIQGRRSTSVEAQKILNESVSRILAIAATHE
                     LLSKQMEDGINLYMVIETVAYNIERCCTDCPKVAVRMDIDKRIYLDSDRTVALALVMN
                     ELLQNSYDHAFHPNESGEILLQIKEEKNIIHAEVTDNGHGFNVRKVSEKSLGLSIVKS
                     YIKDKLRGKVTIESNEHGTKTMFDFKYNSIHATKK"
     gene            complement(4867..5448)
                     /locus_tag="IBJ56_000408"
     CDS             complement(4867..5448)
                     /locus_tag="IBJ56_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANTAR domain-containing response regulator"
                     /protein_id="HAM3416692.1"
                     /translation="MTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIE
                     LCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGAL
                     GYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENN
                     ITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD"
     gene            complement(5723..6862)
                     /locus_tag="IBJ56_000409"
     CDS             complement(5723..6862)
                     /locus_tag="IBJ56_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HAM3416693.1"
                     /translation="MQKVSFKTDLYIGQGATDRLLDFKDKQIFIVTDPFMVSSGMINA
                     ITEKIDPSNTYTIFSEIIPDPPIENVVAGIEVLNECDANLMIAIGGGSAIDAAKAMKF
                     FGQKLGTVRAMPFIVIPTTSGTGSEVTSFSVITNKEKAIKYPLITDAILPDEAILDAD
                     LVKSVPPAITADTGMDVLTHALEAYVSTKANDYSDAMAEKVIQLVFTYLERAYKDGND
                     LEAREKMHNASCLAGMAFNITSLGLNHGIAHTAGAKFKIPHGRMNTLLLPHVISYNAG
                     ITSDFGNNPDNRAAERYTAIAKLLKMPASNTRLGVRSLINAIKQLQKKLNMPTTLSEC
                     GVSRTDLNENIAQIAEGALNDGCTATNPRIPTETDVSAILEKMLA"
     regulatory      complement(7280..7423)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(7452..8327)
                     /locus_tag="IBJ56_000410"
     CDS             complement(7452..8327)
                     /locus_tag="IBJ56_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization protein"
                     /protein_id="HAM3416694.1"
                     /translation="MVIKARCPASCGELLQGWILGGEKLISYPINWYSEVTLSDKVGL
                     NNSGHTKAWLAFQTTCEYFGVAKRDLPQVSLQVKSTIPVAKGMASSTADIAATIGATA
                     KWLNKSISEAEIAKLCLQLEPTDSTIFESLTLFDHLRGDIIQSSNWMPKLGVVVLEPL
                     TILETATYRQENHQAQLLKNEGQLAKGMDYFQQAVTQKSIHLLGKAASVSAACNQTIL
                     PKPFWREIVEVTENLDLVGLNVSHSGTVVGILYELEKTDPLEILFELERRYVTTFYSR
                     YYFREFVSGGVQIIS"
     gene            complement(8317..9402)
                     /locus_tag="IBJ56_000411"
     CDS             complement(8317..9402)
                     /locus_tag="IBJ56_000411"
                     /EC_number="4.1.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-phosphate decarboxylase"
                     /protein_id="HAM3416695.1"
                     /translation="MKITTASHGGNYNELAKQHGLTKEMVLDFSANINPLGVPASLKQ
                     TITTNLDKLVEYPEPDYLALRARIASFHQLDLANVIPGNGATELIFGIAKVTKAQKVL
                     LLAPTFAEYERAFFDAEIVYAELTKETNFAAAQIVLEMLEQDTDIEAVCLCNPNNPTG
                     QLIAQQEMIKIADLCEKRNIYLIIDEAFMDFLEENETISMINYLEKFPHLAIIRAFTK
                     FFAIPGLRLGYLLTKNDLLAEALMQMREPWSINTFADLAGQMLLEDEAYIRQTFDWIN
                     AERDFLYRGLSKFSALTVYRPSVNYIFFHLEKPFDLRKKLLLKGIFIRSCANYRGLTE
                     NYYRVAVKSREDNRQLLTALEVIFSGN"
     gene            complement(9416..10609)
                     /locus_tag="IBJ56_000412"
     CDS             complement(9416..10609)
                     /locus_tag="IBJ56_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HAM3416696.1"
                     /translation="MHKIMAINAGSSSLKFQIFTMPGEEVLVKGLIERIGLPDAIFNM
                     SFQNEKIKEIRAINNHGEAVEILLEQLKAHQVINDLSEITGVGHRVAHGGEDFVTSCV
                     VTDEVVKGIEAVTNLAPLHNPANIIGIKTFRELLPNAVSVAVFDTAFHQTIPEENFLY
                     ALPYELYEKHHIRKYGFHGTSHKYVAGKAAEVLEKPLEKLKIISCHLGNGASVCAIEA
                     GKSVNTSMGFTPNAGLMMGTRSGTIDATIIPYLVDELGYSLDEVMHMMSSESGVLGVS
                     GISSDFRDIEIAAKEGNSRALLTLRMFTGQICNYIGAYASAMNGCDALLFTAGVGENS
                     PLIRQMVTEQLSYLGVTCHVTKNNAGDMIISNDDEAVKVCIIPTNEELMIARDVEKYA
                     KQTIS"
     gene            complement(10675..11379)
                     /locus_tag="IBJ56_000413"
     CDS             complement(10675..11379)
                     /locus_tag="IBJ56_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HAM3416697.1"
                     /translation="MSAYLAEFIGTMVLIMFGNGLLAGLTLNKSLSQGANWVVVTFGW
                     GFAVMIGIYVAGAYSGAHLNPAVTIALAVGGSFPWADVVPYIIAQIAGAFVGASIVIL
                     HYYPHFKATPPEIDTHGIFSTGPAIRNTPFNLISEIIATFAFIFGLLMIGANSFTDGL
                     NPLILGFLVVAIGMSFGPTTGYAINPARDLGPRLAYFLLPVPNKSGSDWRYAWIPIVG
                     PIIGGLLAIGLFNILL"
     gene            complement(11407..12525)
                     /locus_tag="IBJ56_000414"
     CDS             complement(11407..12525)
                     /locus_tag="IBJ56_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HAM3416698.1"
                     /translation="MNSFQIKTKVAFGTNSLQVLKEIKNKNVWIICDRFLADGEGLQG
                     LIGQLDTSNNVHIFTDVVPDPPISKVAGGVSEAGKIQPQVMIAFGGGSAIDTAKGIYY
                     FAKRLEKINISTFIAIPTTSGTGSEVTAATVITDPTTKIKYPLFLDELIPDMAILDAQ
                     LVVTVPPAITANTGMDVLTHAIEAYVSKDASDYTDALGEKSVQLTLRFLTSCYDDGRN
                     LANREKMHNASTMAGMAFNCANLGLNHSIAHQLGAQFHVPHGLANAILLDAVIRFNAF
                     KNRETEQKYAEMARICGIASRSDSNETAVRLLRERIVAMMEHMQMPRTLTDAGVAKEK
                     VYAKMDEIATNALKDACLPTSPTTPSHQELKEILEQII"
     gene            complement(12541..13950)
                     /locus_tag="IBJ56_000415"
     CDS             complement(12541..13950)
                     /locus_tag="IBJ56_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HAM3416699.1"
                     /translation="MESLELEQLVKKVLLEKLAEQKDAPVKTTVKGAKSGVFDTVDEA
                     VQAAVIAQNNYKEKSLEERRNVVKAIREALYPEIESIAARAVAETGMGNVADKILKNT
                     LAIEKTPGVEDLYTEVATGDNGMTLYELSPYGVIGAVAPSTNPTETLICNTIGMLAAG
                     NAVFYSPHPGAKNISLWLIEKLNTIVRESCGIDNLVVTVEKPSIQAAQEMMNHPKVPL
                     LVITGGPGVVLQAMQSGKKVIGAGAGNPPSIVDETANIEKAAADIVDGASFDHNILCI
                     AEKSIVAVDSIADFLMFQMEKNGALHVTNPSDIQKLEKVAVTDKGVTNKKLVGKSASE
                     ILKEAGIVCDFSPRLIIVETEKTHPFATVELLMPIVPVVRVPNFDEALDVAIELEQGL
                     HHTATMHSQNISRLNKAARDMQTSIFVKNGPSFAGLGFRGEGSTTFTIATPTGEGTTT
                     ARHFARRRRCVLTDGFSIR"
     gene            complement(13957..14952)
                     /locus_tag="IBJ56_000416"
     CDS             complement(13957..14952)
                     /locus_tag="IBJ56_000416"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HAM3416700.1"
                     /translation="MSIYTKTGDKGTTALFDGNRVKKYDDRVETYGSFDELNAEISVA
                     EKFVTSAENKTLLRNVERQLFYVCAELATEHEASLASKIIITENDINQLEKVIDDYTA
                     KLPKVDSFVLPGSSTAGAFLHSARTVARRGERLLVRLSEQTAIRKELLKFVNRLSDFL
                     YILAREEDFRQMLDKATKLIVAKYLEQTGQEKSFTSDLSFSFCEKLMHQVCIVSEEIG
                     VPVTLAIVDAHGNVRFNYRMEHALLVSAELATKKAYSAVAMKTSTEKLTEAVQPGAPL
                     YQLETLTNGDIVTFGGGVPIYGKDGAIIGGMGISGGSVEEDIHIAKKALSMIEKG"
     gene            complement(14967..15230)
                     /locus_tag="IBJ56_000417"
     CDS             complement(14967..15230)
                     /locus_tag="IBJ56_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HAM3416701.1"
                     /translation="MFMAKITGSVVSTKKEDSLTGKKLMIVQPVDANGEHVRSEEVAC
                     DSVGAGIGEYVLVARGNAARSVFAEPNSAIDSAIIAIVDSFDK"
     gene            complement(15235..15714)
                     /gene="pduM"
                     /locus_tag="IBJ56_000418"
     CDS             complement(15235..15714)
                     /gene="pduM"
                     /locus_tag="IBJ56_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PduM family microcompartment protein"
                     /protein_id="HAM3416702.1"
                     /translation="MIEKLVKIIVQRLKLRATNKTSIAISKLPRDPVAIFIESGTIRL
                     TQVNKHFLERILSGNRAESLTAWFEKATDYGVTIELELYDNGEPWLDYTMLSQLEFPV
                     FTNKGERLFHSNGQVICYGDSAVIPSGSTLCKYKKQLITPLANEYLTKNNIAVRERQ"
     gene            complement(15711..16550)
                     /gene="eutJ"
                     /locus_tag="IBJ56_000419"
     CDS             complement(15711..16550)
                     /gene="eutJ"
                     /locus_tag="IBJ56_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
                     /protein_id="HAM3416703.1"
                     /translation="MDILQTANERMEQLAALMNKDIKQKVSADQKVKVGVDLGTSSIV
                     FVVLDEHDVPLFGAFEFADAVRDGLVVNYRESVEVVTRLKERAEKCLGITLTHASGAI
                     PPGTVGNNKKVVANVIESAGMEALYTIDEPTAAAAVLGLQDGAVVDVGGGTTGISVFE
                     NGEVIYTADEPTGGTHMTLVLAGYYGVPVEKAEQNKREQKDSSEHFSVMRPVVEKMAE
                     ITRVHLEKSPSEPLYIVGGASAYSQFKDTFESYLKTPVFQPNYPQYVTPLGIAMSSGS
                     ENL"
     gene            complement(16571..17206)
                     /gene="pduL"
                     /locus_tag="IBJ56_000420"
     CDS             complement(16571..17206)
                     /gene="pduL"
                     /locus_tag="IBJ56_000420"
                     /EC_number="2.3.1.222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate propanoyltransferase"
                     /protein_id="HAM3416704.1"
                     /translation="MEREELKAIIKQIVTDKLSGVETEIPIGVSNRHIHLTENDYNQL
                     FPNEPIQVKKWLKQPGEFAAEQTLTVVSEKGELHRVRILGPLRKFSQVELSKTDARML
                     GMKIPIRVSGDIDGTPGIKLVSKHSEICLPKGAIVAKRHIHLPESVAHEYGVKQGDEV
                     SVLVGSEMRSLVLNHCTIRVNNQFIPEMHIDTDEANAADIAGTCFAKIIKS"
     gene            complement(17210..17485)
                     /gene="pduA"
                     /locus_tag="IBJ56_000421"
     CDS             complement(17210..17485)
                     /gene="pduA"
                     /locus_tag="IBJ56_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduA"
                     /protein_id="HAM3416705.1"
                     /translation="MNNALGMIETKGLVGAIEAADAMVKAANVSLVGYEKIGSGLVTV
                     MVRGDVGAVKAATDAGAAAARNVGEVQSIHVIPRPHNDVETLLPKGL"
     gene            complement(17510..17947)
                     /locus_tag="IBJ56_000422"
     CDS             complement(17510..17947)
                     /locus_tag="IBJ56_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HAM3416706.1"
                     /translation="MHQAIGMIEIKGLASAITVADTMAKVANIQLVDTEKAKGFGWIT
                     VKVEGDVAAVNAALEAGEQTAIASDSFIAKKVIPRPGEEIFTVFWPKEEIEPEQPEVM
                     VETEKVEETEVPAEATCNLCHDPLCPRVKGDPRQDCIHFEEEK"
     gene            complement(17960..18307)
                     /locus_tag="IBJ56_000423"
     CDS             complement(17960..18307)
                     /locus_tag="IBJ56_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol dehydratase"
                     /protein_id="HAM3416707.1"
                     /translation="MIPVVSKPAIYFHADVDANPDSIKQVLFGIEEEGIPCELEIMSL
                     KDEVQAAFRASASSPLLVGVTLKNDHLVIHYRNLPPDKPLFSAYRFCATTLENQRNMG
                     MNAARLVKGVPFK"
     gene            complement(18304..20124)
                     /locus_tag="IBJ56_000424"
     CDS             complement(18304..20124)
                     /locus_tag="IBJ56_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diol dehydratase reactivase subunit alpha"
                     /protein_id="HAM3416708.1"
                     /translation="MKYIAGIDIGNSTTEVALAMANYSKEVAFVASAITDTTGIKGTK
                     QNLHGIFKALRLALEKVNATTENLAEIRINEATPVIGDVAMETITETIITESTMIGHN
                     PKTPGGLGMGSGVTVLLDDVTSKSKDEDYIVIIPKTVDFEDAAKQINTYVENGYQITA
                     AILQADDGVLVHNRLNHKIPIVDEVGFIDKVPVDMLAAVEVAAPGKVIETISNPYGIA
                     TVFHLNSDETKNIIPVARALIGNRSAVVIKTPEGDVKARTIPAGHIELQSGSRTQRVN
                     VAEGSEKIMQAIMSLPKLDNASGEPGTNIGGMLEKVRQTMAGLTDKLPADIFIQDLLA
                     VDTFVPVDVQGGLAGEFSMEQAVGIASMVKSDHLQMAAIASEIEQELQVSVKIGGAEA
                     EAAILGALTTPGTNTPLAILDLGAGSTDASIINGKGEIIATHLAGAGDMVTMIIQSEI
                     GLEDRYLAEDIKKYPLAKVESIFHIRHEDGTVQFFDTPLSPTVFAKVVIVKPDGFVPI
                     PGDVSIEKIKLIRRSAKERVFVTNTIRALKYVSPTGNIRDIPFVVIVGGSALDFEIPQ
                     LITDALSHYSLVAGRGNIRGKEGPRNAVATGLILAGGAKA"
     gene            complement(20170..20682)
                     /locus_tag="IBJ56_000425"
     CDS             complement(20170..20682)
                     /locus_tag="IBJ56_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diol dehydratase small subunit"
                     /protein_id="HAM3416709.1"
                     /translation="MNQEALENMVRNILQEVNSGAVSTTTSQKVSGDTLTVRDYPLGT
                     KRPELVKTSTSKSLDDITLKSVLDGTIKPEDVRVTAETLKMQAQVARDAGRATLANNF
                     ERAAELTIVPDERILEIYNAMRPYRSSREELLAIADELESVYHATICSNYVREAAQLY
                     QERKKLKGDN"
     gene            complement(20699..21358)
                     /locus_tag="IBJ56_000426"
     CDS             complement(20699..21358)
                     /locus_tag="IBJ56_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol/glycerol family dehydratase medium
                     subunit"
                     /protein_id="HAM3416710.1"
                     /translation="MVEINEKVLRGIISEVLDELQLKEDKVSFQKEQPSVAVSDESFL
                     TEVGDAEPGRQKDEVVIAVAPAFGKYQTKNIVGVPHKQILREVIAGIEEEGLKARVVR
                     VFRSSDVAFVAVEGDKLSGSGICIGIQSRGTALIHQKDLQPLSNLELFPQAPLITLET
                     YRAIGKNAAKYAKGESPNPVPMVNDQMARPKFQAKAALLHIKETKHVVQGKNAVELQV
                     N"
     gene            complement(21396..23060)
                     /locus_tag="IBJ56_000427"
     CDS             complement(21396..23060)
                     /locus_tag="IBJ56_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol/glycerol family dehydratase large
                     subunit"
                     /protein_id="HAM3416711.1"
                     /translation="MKSKRFEELAKRPVNQDGFVKEWIEEGLIAMESPNDPKPSIKIE
                     NGKVVEMDSKKLADFDLIDHFIAKYGVDLSRAEEVMQMDSVKLANMLCDPNVPREKIV
                     LLTTAMTPAKIVEVVSQMNVVEMMMSMQKMRSRRTPTTQAHVTNLRDNPVQIAADAAE
                     AAIRGFDEQETTVAVVRYAPFNALSLLVGSQTGRGGVLTQCSLEEATELELGMRGLTC
                     YAETISVYGTEPVFTDGDDTPWSKGILASAYASRGLKMRFTSGTGSEVQMGYAEGKSM
                     LYLESRCIFITKAAGVQGLQNGSISCIGIPGAVPSGIRAVLAENLIAVMLDLEVASGN
                     DQTFSHSDIRRTARLLMQFLPGTDYISSGYSATPNYDNMFAGSNFDADDFDDYNILQR
                     DLKVDGGLTPVTEEEVVAVRNKAARVIQAVFDKLGLPEVTDAEVEAATYARGSKDMPE
                     RNMVEDIKAAAEMMDRGVTGLDVVKALSAGGFDDVAESVLNMLKQRVSGDFLHTSAII
                     DKDWNVISSVNDLNDYAGPGTGYRLEGERWEKLKDIAVAVDANELE"
     gene            complement(23079..23882)
                     /gene="pduB"
                     /locus_tag="IBJ56_000428"
     CDS             complement(23079..23882)
                     /gene="pduB"
                     /locus_tag="IBJ56_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduB"
                     /protein_id="HAM3416712.1"
                     /translation="MSEQNKLIDEILKQVMETVNDAPEKLVEDGGSRQMSEKAVQLTE
                     FVGTAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGILGARTGAGPHIMAADEAVKATN
                     TEVVKIELPRDTKGGAGHGSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHI
                     ELQYTARASHALNTAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPAD
                     GTSFSNEVILCISGDSGAVRQAVISAREIGKKLLGALGDEPKNDRPSYI"
     gene            complement(23875..24162)
                     /gene="pduA"
                     /locus_tag="IBJ56_000429"
     CDS             complement(23875..24162)
                     /gene="pduA"
                     /locus_tag="IBJ56_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduA"
                     /protein_id="HAM3416713.1"
                     /translation="MQEALGLVETKGLVGAIEAADAMVKSANVTLTGYEKIGSGLVTV
                     MVRGDVGAVKAATEAGAAAARNVGTVMSTHVIPRPHTDVEEILPVRVKSDE"
     gene            24465..25349
                     /locus_tag="IBJ56_000430"
     CDS             24465..25349
                     /locus_tag="IBJ56_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAM3416714.1"
                     /translation="MLLQSKSNEMLIEKVMDEFSAATSLASVVVDIHGTEVSRLCNFT
                     PFCQLIRSNPKYRSLCQKCDMFGGLEASKTGKPLIYRCHAGLTDFSVPIVVENQLSGF
                     LLSGQVICEESSEVGNIQAEETDWKNDKELISAFRSVPVFSSKKINSSAEMLTIISQY
                     YLKSEMEKSREEQKQKIVFHHAKIAHHEENKEIRKALKYIEKNLNRPITLDEVASHVY
                     LSSYYFSKLFKKEMNVNFINYVNQKKMSLAKEMLKNPRLSIDNIARNLGFTQTSYFCK
                     VFRKEFEVTPKGYRETLK"
     regulatory      complement(25503..25693)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(25759..>26031)
                     /locus_tag="IBJ56_000431"
     CDS             complement(25759..>26031)
                     /locus_tag="IBJ56_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ribazole phosphatase"
                     /protein_id="HAM3416715.1"
                     /translation="EYCNNWQTALFPNGESFPIFYERVVAILEEEMEKWQQLDTVLLV
                     GHLGVLRVIALFLQKQTIAQYWDIDFKQGCYSLWDNKSQHFLISNQ"
BASE COUNT         7148 a         5754 c         4704 g         8425 t
ORIGIN      
        1 tttggcgttt tttgtcgtat tcgcacgaat cacttctacc atttcgttgt caaattcacg
       61 acctaagtct gggcgagtta agtattcatc tttatcttga catttagtgt tcactgggat
      121 gaagttcatt tcttttacta aatcctcaga aacgtaagag aaaacggaat cttgtgctac
      181 ggcatggtcc gcacggaaac gaagaattgt ttctgttttg taacgtggac cagcacgcca
      241 taaaccaagt cgagccggtg tcatttgttt cattttcaaa taaccttcac gatcagctgg
      301 ttctggtact agtaattgtt ttttgatatc tacttcagta atatccggga tgctaccttc
      361 tgttataact gtttcaacta cagatttagt tggcgcagct gctactgtat cggttgtttt
      421 accaccggac atttctgtta aaatgccttc aatcatttgt tttaattctt gttcgttcat
      481 cgcttagttc ctcccttcct tattttagga aaatagatgc atctccagca cggctagtta
      541 atttaccatt ttcgctgaat cccatttttt ccatccactg atcaaattct ttaattggtt
      601 ttaagccaaa taattcacgt aaagtggctg tttcgtggta accagttgtt tggtagttaa
      661 gcataacgtc atcaccatga ggaataccca tgataaagtt acatcctgct gcagttagaa
      721 gtacggacaa gttttctacg tcgttttggt cggctttcat atggttggtg taacaaacat
      781 cacaacccat agagatacca gttaatttac ccatgaagtg atcttcaagg ccagcgcgaa
      841 ttacttgttt agaatcatat aagtactcag gtccgataaa tccaactact gtatttacta
      901 ggaatggatc aaatttcttc gcgaatccat aacaacgagc ttccattgtt acttggtcta
      961 cgccgaaatg agcgtcagaa gaaagttcag aaccttgtcc tgtttcaaag tacattacgt
     1021 ttggtccagt cgcagcacca ctttgaaggg ctaattgtct agcttcttca atcgttgctc
     1081 cgtcaaaacc gaaagctgta ttaccttttt cagaacctgc gatagattgg aatacaagac
     1141 cagttggagc gccgcgacgc attgcttcca tttgagtctt cacgtgtgca agtacacaag
     1201 tttgtgttgg cacatcccat ttgctgcgga attcttcaaa tttattaagt aaacgaacaa
     1261 cgctatcagt agaatcatct actgggttaa gtccgattac cgcatcccca atcccgtaag
     1321 ttaatccttc cattaaggaa gcaaggatac catcaggatc atcggttgga tggtttggtt
     1381 gtagtctagc ggagaaagtt ccaggaagac cgattgttgt attcgcatgt gcgattacac
     1441 ggattttttt cgcgccataa attaaatcta gattggacat taattttgta acagcagcaa
     1501 taatttctga tgttaggccg cgtgcaacac gtttaatgtc agcatctgtt gttttatggt
     1561 ctaaaatcca ttcccgtaat tcttccactg tccagttttt gatggaatca tggatacggt
     1621 catttacttg gtcttgaata atacgcgtta cctcatctgt ttcatatggg acaaccggat
     1681 tattacgtaa atctccaagc gtcattttag aaagcaccac ttttgcagct acacgttctt
     1741 ctgcagattc agcagcaact ccggctaaac ggtcgcctga tttttcttcg tttgcttttg
     1801 ccaacacatc agtgatggat ttgaactggt atgtatggcc gaataaattc gtttttaaaa
     1861 tcattcgata aatcctcctc tcaaaattaa agctatttat gtggatcagt taaagactaa
     1921 ggttttaact actactggta gcactttccc gtcagcaact ggttttccta tatcaatata
     1981 atcaccatta tcgactttga cactatccaa gcaaattagt ggatgcccgg ctggtaaatg
     2041 cccgaagatg ctttgtccga gggcttttgc catgtcgtgc catgtaatga taattaaggg
     2101 atgaccaagt gcgattggtt ctttcattcc ttcgcaaatg gctttcgcat attctgttac
     2161 ttgctggaaa cttgggctat tttcgccttc aattgcaagt gcaatatgtt ccatttcatt
     2221 ctctattttg aaccagctaa gtttttcctt gatgacttct gccatatttt catcttcttc
     2281 ttgtttggca agtttcaaaa ttggaatgtt ttttactggg aaaattttct cggtgtaagt
     2341 aatcgtacta ccgctaattt cagctgtgtg tgaaccggct ccgaccactg ttgcccgtat
     2401 ggtttcgaca gattcgatat actttttttc agtcattaaa ctagattctg caatcgcttt
     2461 tcctagcaat aacccaatat ccccatatct aaaaggatca cttagcgcac ccgttgagat
     2521 gcagtctgca acgcctccgg aaaaagagat acattcaatc tccgttaaga atttcaatcc
     2581 tttattcgta atgattgttt cataaaaatc atttggcgcc ccgaggccaa cactattctt
     2641 aagcagctca accatttcac ctaaaacggg ttgcaagttt tctggtgaag ttgtttcacc
     2701 aagtttaacc ggataacctc gtttttctat taaagcttga atttttggag caatataggt
     2761 gatttttctt gtttcacggt ctactttaat taaccgacca ccaatatcta agcaagcagt
     2821 atcaatgagt tctccgcgat caaacagcga taagttcgtg gttccgccgc caatatccaa
     2881 attcacaaca gaggtattat tctctttggc ataggtatga gcacctgctc cttttccagc
     2941 aatgatgctt tctaagtcag gtcctgctgt tgctacaaca aaatccccag caaaaccact
     3001 cattgcatct aatacattgc tggcgttatc tttacgagct gtttcacccg tgataataac
     3061 tgctcccatg ccaatttctt cttttttaat tcctgcattg gcatattctt tcgttacaaa
     3121 atcacgaatc gcctccacat caatcaaatt atcagcaaga atcggtgtga acagaatctc
     3181 acttctaaaa ataatccgct tatctgaaat gacaatacgc ggcacggtga aacttgatgc
     3241 catattttga atttctaact cggataaaat gagttgtgtt gtcgacgtac caaggtcaat
     3301 ccctacactt aaaattgttt ccgtcaaaac cctcactcct ttctagcaaa aagaaaaagc
     3361 ttaaagacaa ataacagtat cgttacttgg ctttaagctt catcgctttt tcatagctac
     3421 ttctttgtag catggataga attgtattta aaatcaaaca ttgttttcgt tccgtgttca
     3481 ttcgattcaa tggttacttt gcctcgaagt ttatctttaa tgtaactttt gacaatggaa
     3541 agtcctaggc ttttttcgga cactttacga acgttgaacc catgaccgtt gtccgttact
     3601 tctgcgtgaa taatattttt ctcttctttt atttgtagta aaatttcgcc tgattcattt
     3661 ggatgaaatg cgtgatcata ggagttttgt aagagttcgt tcatgacaag cgccagtgcc
     3721 acggttcggt cactgtccaa ataaatgcgt ttatcaatat ccattcttac agctactttt
     3781 ggacaatctg tacaacatct ttcaatattg taggcgactg tttcgatgac catataaagg
     3841 ttaatgccgt cttccatttg cttcgataaa agctcgtgtg tcgctgcaat ggcaaggatt
     3901 cggctgacac tttcatttag aatcttctgt gcctccacac ttgtagaacg tctgccttga
     3961 attcgcaata aggaaacaac agattgcaaa ttgtttttga cacggtgatg aatttcacga
     4021 atagcaacgg atttagaaac aatttctgct tctttcactt taatatccgt gatgtcatgc
     4081 aagatgagaa taaagcggca ttcctgctcg tcttcttctt ttacaaaaat ctgcttcata
     4141 ataaagtaat tcccggcgat aaccacttct ttttttaact gaatcggttg ttttccagtt
     4201 tcaatttgat acatgattgc gtcaaacatc atctggtcga gggataaatt atcataatgc
     4261 atgccttgga tgtcttccat ataaccaagt ctttcgtaat actgatccgc agcgcaattc
     4321 ttttgctgca aaatcccgtt tcggtcaaaa atcaaaatgg catcatctag ttgatcagta
     4381 attgaatccg ttagtttact catggcagac agcgtggtag aaacatctcg ataagccgtt
     4441 tcttcattgt caatttcaaa atgagcttta atttcggcgc taatatcatt ttctagaatt
     4501 agcacggcaa taactcgctg tttattacga atcggataaa ctttttggcg aattaatacg
     4561 ttttcttgtg tttttgcaag tagatcgtta gagttcatac ctgtttccaa tgttctaagt
     4621 acacctggct cattagacct tagggctgtt tctccgacta ctttgttttt gtaaagtgat
     4681 ttggttgttt ttggtggtgt atgatgaata acaagtgctt cactagttag cttattgtat
     4741 acatcaataa atacatctac atcttgatac atggctgaaa cacttaacga cttggctgtg
     4801 tgaattaatt cttcaatatc gtgctccgat aaatctgtgt agcgtaagca catttctcga
     4861 atcgttttag tcatcgctca tcacaatcgt ttctgcgatt tccatcatcg gacagcgttt
     4921 gtccatgctc agattacgaa tcatgttgta ggcttcttcc tctgtgatgt tgttctcaat
     4981 cataagcaca cctttagctt tttcaatcac ttttcgttct tctaattttt tggtgagctt
     5041 ttctaattgc tgctctaatt ttcttgtttc tcgccctttg gcaatactca tttcaacagt
     5101 cggaatcaaa cttttttcat caagtggctt tactaaataa cctaatgctc caaacccttt
     5161 agctttctcg gtgtttttcg gatcactaaa agcggtaagt aagataattc cgccagcaag
     5221 gccttctgaa ataattcgtt tccctgcttt taagccgtct aagagtggca tttgaatgtc
     5281 catgataaca agatctggct gatggctttt gcaaagttcg attgcttcaa aaccatctgt
     5341 cgcttcccct acaacattgt agttcgcttc ttctaagatg tctcggatgt ccattcttgt
     5401 aataggttca tcatcggcta ttacaattct tccattcatt cctgtcacgt cctcttcttc
     5461 tgctattgat tgattcgtca caataaagga caaaatcatt ctatagaagc atttacttga
     5521 gcgaaagagt aaaagagcta gagaaaaaat tctccaagaa aatagaaaga gccccttaaa
     5581 aatattgtgc aatatttttg agggagcccc gttgctctgc tatatttata attccacacg
     5641 tctttgtgct cggttctatt ataaagtagc atgaaaacga tgtcaatagg ttatttgatt
     5701 ccagttgtga aataaataac ttttatgcca acattttttc gagaatcgca ctaacatctg
     5761 tttctgtcgg tattctagga ttggttgcag tacatccatc atttagtgcg ccttccgcga
     5821 tttgagcgat attttcattt aaatcagtgc ggctaacacc acattcggat aaggtagttg
     5881 gcatattgag tttcttttga agttgtttaa ttgcattaat taagctacga acaccaagac
     5941 gtgtattcga tgctggcatt tttagtaatt tggcaatcgc tgtataacgt tctgctgctc
     6001 ggttatccgg attgttacca aaatcacttg taattccagc attataacta attacgtgcg
     6061 gtaaaagtaa tgtattcata cgaccatgtg gaattttaaa tttcgcaccg gctgtatgcg
     6121 caataccgtg atttaagcca agagaagtaa tgttaaatgc cattcctgca agacaagacg
     6181 cattatgcat tttttcgcga gcttctaaat catttccgtc tttataagca cgctctaagt
     6241 atgtgaatac taattggata actttttccg ccattgcatc cgagtaatca ttcgcttttg
     6301 tagatacata ggcttcaagc gcatgcgtta acacatccat accagtatct gctgtaattg
     6361 ctggtggaac agattttact aagtctgcat ctaaaattgc ttcatctggc aaaatagcat
     6421 ctgtaattag tgggtattta atggcttttt ctttgttagt aataacagag aaactagtta
     6481 cttcggagcc agttccacta gttgttggaa tgacaatgaa aggcattgcg cgcaccgtac
     6541 caagtttttg gccgaagaat ttcatcgctt tcgccgcatc aatcgctgat ccgccaccaa
     6601 ttgcaatcat caagttagca tcacattcat tcaaaacttc aattcctgct accacgtttt
     6661 caatcggtgg gtctggaatg atttcgctaa aaatcgtata tgtattcgat ggatcaattt
     6721 tttctgtaat cgcattaatc attccggaac taaccataaa tggatctgtt acgataaaga
     6781 tttgtttgtc tttaaaatcg agtaaacgat ctgttgctcc ttggccaata taaagatctg
     6841 ttttaaaact aactttttgc atgagattac ctcctagttt ttttaaaata aaaaaagaag
     6901 ctttgagtag agaaatttcc tcttccaact caaagcttct ttgctaagta aacagtacgc
     6961 ctttgtaccg taaaatattt tatttgtcca ctttattaaa aaccaaaccc gtggaaatgt
     7021 caaatctttt tttgtaaata ggcaatgaag atacattcct tgtatcactc ttttcgtcgt
     7081 tgaaaagatc attgcccacc ataaaacgaa gcggtgcaca tctttgtgcg tatggtgctt
     7141 gataaaacgt agctcgttca gcttctcggc accaaaccat ttacagtggg cttatttgtt
     7201 ttaaaaacaa ataaaaaagc cccagtgaga caactacact ggaaccaaga attatacatg
     7261 ctttgcctcg aagcagtata accagttaaa acaattagat aaaagacctg acttagagtg
     7321 tctaactcct tacagtggcg ggaccgtgct ggactttcac cagacttcca gtatctaact
     7381 gtttgtatga acgaattcgt ttatcaaagt tattatagca taaaatagac cgcttgcaag
     7441 aagaatttgc tttacgagat aatttgaacc ccaccactga caaactcacg gaaataatat
     7501 cgactgtaaa aagtcgtgac atagcgccgt tctagctcaa ataaaatttc gagtggatcc
     7561 gttttttcga gttcataaag tataccgaca acggtaccac tatgcgaaac atttaacccc
     7621 actaaatcca agttttccgt cacttccaca atctctcgcc aaaatggttt tggcaaaata
     7681 gtttggttgc aggctgcact aactgatgcg gctttaccaa gtaagtgaat ggatttttgc
     7741 gtgacggctt gttgaaaata gtccattcct tttgctagtt gtccttcgtt tttcagtaat
     7801 tgcgcttggt gattttcttg ccgatatgta gctgtttcta aaatggtaag cggttctaac
     7861 acaacgacgc caagctttgg catccaattg gagctttgaa tgatgtcccc tcttaagtga
     7921 tcgaacaaag ttagtgattc aaaaatagtg ctatccgttg gttctagttg taaacatagc
     7981 ttggcaattt cagcttctga gatagattta ttcagccatt ttgctgtagc gccaattgtt
     8041 gcggcaatat cagcggtgga acttgccatg cctttcgcga ccggaatagt tgacttcact
     8101 tgtaaagata cttgcgggag gtctctttta gccacaccaa aatactcgca agtggtttgg
     8161 aatgcgagcc atgcttttgt atgcccggag ttatttagtc ctactttatc agataaagtg
     8221 acttcggaat accagttgat tgggtatgaa attagcttct ctccgcctaa aatccagcct
     8281 tgcaaaagtt cgccacaaga tgccggacac ctcgctttaa ttaccactaa aaatcacctc
     8341 aagtgcggtt aagagttggc gattatcttc tctacttttc actgccactc ggtaataatt
     8401 ctccgtgaga cctcggtaat tagcgcaact tcggataaaa atccctttta aaagcaattt
     8461 ttttcgtaaa tcaaacggtt tttcgaggtg gaaaaatatg taatttacac ttggtcggta
     8521 cacggtaagc gctgaaaatt tacttaagcc tcggtataaa aagtctcgtt ccgcattaat
     8581 ccaatcgaat gtttgtctaa tataggcttc atcctctaat agcatttgcc ctgctaagtc
     8641 agcaaatgta ttaatcgacc agggttcgcg catttgcatg agtgcttcgg ctaataagtc
     8701 attttttgtc agcaaataac cgagtcttaa gcctggaatc gcgaaaaact tcgtaaaggc
     8761 gcgaataatt gctaaatgcg gaaatttttc taaatagttg atcatcgaaa ttgtttcatt
     8821 ttcttctaaa aagtccataa aagcctcatc gataattaaa tatatgtttc gcttttcaca
     8881 taaatcagca atttttatca tttcttgttg cgcgatgagt tgtcctgttg gattattggg
     8941 gttgcacaaa caaacagctt cgatatccgt atcttgttca agcatttcta gtacgatttg
     9001 cgccgcagca aaattggttt ctttcgttaa ctcagcataa acaatttcgg catcaaaaaa
     9061 agcacgttcg tattccgcaa aagtaggcgc aagtaagagt actttttgcg cctttgttac
     9121 ttttgctatt ccgaaaatca gctctgtcgc cccgtttcca gggattacat tcgctaggtc
     9181 gagttgatga aacgaggcaa ttcgcgcacg gagcgccaag taatctggtt ctggatattc
     9241 taccagtttg tccaaatttg ttgttatcgt ttgtttcaaa ctagctggga ctcctaatgg
     9301 attaatattc gcactgaaat cgagcaccat ttctttcgtt aatccgtgtt gttttgctag
     9361 ttcattatag ttgccaccgt gagaagccgt cgttattttc acatcaaatc gctccttaac
     9421 ttatcgtttg ttttgcatac ttttctacat cgcgagcaat cattagttct tcattggttg
     9481 gaataatgca cactttgacc gcttcatcat cattgctaat tatcatatca cccgcattat
     9541 tttttgtcac atggcatgtt acaccaagat aacttagctg ttctgttacc atttggcgga
     9601 ttaatggcga attttcaccc acacccgctg taaataataa tgcgtcgcaa ccgttcattg
     9661 cggaggcata agcaccgatg tagttgcata tttggccagt aaacatacga agtgttaata
     9721 gcgcgcgtga attaccttct ttggctgcaa tttcgatatc tctgaaatca cttgaaattc
     9781 ccgatacgcc aaggacacct gattcactag acatcatatg catcacttca tccaagctat
     9841 agcctaattc atccactaaa tacgggatga ttgtcgcgtc aattgtacca gaacgtgttc
     9901 ccatcatcaa gccagcattt ggtgtaaagc ccatggaagt attcactgat ttcccagctt
     9961 caatcgcaca aacactcgct ccattgccta aatgacaaga aataattttt aatttttcta
    10021 aaggtttttc gagaacttct gctgcttttc cagccacata tttatgactc gttccatgaa
    10081 aaccgtattt tcgaatatga tgtttttcat aaagttcata aggaagcgca tataaaaagt
    10141 tttcttctgg aatcgtttga tggaatgcgg tatcaaatac tgcaacagaa accgcatttg
    10201 gcagcaattc acgaaaagtt ttgattccga tgatattcgc tggattatgt agcggcgcaa
    10261 ggtttgtcac agcttcaatc cctttcacca cttcatctgt tacaacacag gacgtaacaa
    10321 aatcttctcc gccatgcgca acacgatgtc cgacccctgt aatttcgctc agatcattga
    10381 ttacttgatg cgccttcagc tgctccagta aaatctcgac tgcttccccg tggttattga
    10441 ttgctcgtat ttctttgatt ttttcatttt gaaaggacat gttgaaaatg gcgtctggta
    10501 gaccgattct ttcaattaag cccttaacta aaacttcttc tcctggcatc gtaaaaattt
    10561 ggaatttcag tgaagaactc cctgcgttta tcgccataat tttgtgcata tagctcagtc
    10621 ctttctcatt tttaaaggag taaacaaagc cattcttgtt tactccatgc ttttttataa
    10681 taaaatgtta aatagtccaa tggctaagag accaccaatg attggtccga caattggaat
    10741 ccaagcgtaa cgccagtctg acccactttt atttggtact ggtagtaaaa agtaagcaag
    10801 tcttggtcct aaatcacgag ctgggttaat cgcataacct gtcgttggtc caaaactcat
    10861 tccgatggca actactagaa agccaaggat taatggattt aaaccatctg taaaactgtt
    10921 cgctccaatc ataagtaaac caaaaatgaa agcaaatgtt gcgataattt cactgattaa
    10981 attgaaaggt gtatttctaa tcgctggtcc tgtggaaaaa ataccatgtg tatcaatttc
    11041 tgggggagtc gctttaaaat gcggatagta gtgtaaaata acgatggatg ctccgacaaa
    11101 tgctccggcg atttgcgcga taatatatgg caccacatct gcccaaggga atgatcctcc
    11161 aactgcaagc gcaatagtta cagctggatt taaatgcgcc ccgctatatg ctcctgctac
    11221 ataaataccg atcattaccg caaagcccca accaaatgta actactaccc agtttgctcc
    11281 ttgagataat gatttattta atgtcaatcc tgctaaaagg ccgttcccaa acataattaa
    11341 aaccatcgta ccaataaatt ccgccaaata tgctgacata gtttatcctc ctttttaatg
    11401 taaattctaa attatttgtt ctaaaatttc ttttagttct tgatgtgacg gtgtcgtagg
    11461 actagttggt aagcaagcgt ctttcagtgc attcgttgca atttcgtcca tttttgcata
    11521 gactttttct tttgctacac cggcgtctgt caatgtgcgc ggcatttgca tatgttccat
    11581 catcgctaca attctttcgc gaagtaagcg gacagctgtt tcgttcgagt ctgatctgga
    11641 agcaatgcca caaatgcgtg ccatttctgc atatttttgt tctgtttcac gatttttaaa
    11701 ggcgttaaaa cgaatcactg catctagtaa gatcgcattg gctagcccgt gtggtacgtg
    11761 gaactgtgca ccaagttgat gcgcaatact gtgattcaag cctaaattgg cgcagttaaa
    11821 agccattcca gccatagtag aagcattatg cattttttct cgattcgcta aattacgacc
    11881 atcatcataa cagctcgtta agaaacgtaa cgttaattgc acactttttt caccaagagc
    11941 atcggtataa tcgcttgcat ctttagagac ataagcttca attgcgtgtg ttaagacgtc
    12001 catccctgtg ttcgctgtaa tagctggagg taccgtaaca accagttgcg catccaaaat
    12061 agccatatcc ggaattagtt catctaagaa aagcggatat ttaattttcg ttgttggatc
    12121 agtgataacg gttgcggctg taacttctga acccgtaccg ctggtggttg gaattgcaat
    12181 aaaagtactg atattgattt tttccaaacg tttggcgaaa tagtagattc ctttagccgt
    12241 atcaatcgct gaaccaccac caaaagcaat catgacttgc ggttggattt tgcctgcctc
    12301 actaacccct ccagctactt tggaaatagg tggatcaggt acgacatcgg taaaaatatg
    12361 cacattattg gatgtatcta attgtccaat taaaccttga agcccttccc catcagccaa
    12421 aaaacggtca cagataatcc agacattttt atttttaatt tcttttaaaa cttgtaaact
    12481 attcgtacca aaagctactt ttgttttaat ttgaaagctg ttcattcagt ttgcctcctc
    12541 ttaacgaatc gaaaaaccat ctgttaaaac acaacggcga cgtctagcaa aatgacgcgc
    12601 tgtagtggtt ccttctccgg taggcgttgc aatagtgaaa gtagtgctac cttctcctct
    12661 aaagcctaat cccgcaaatg aaggaccatt tttgacaaag atggatgttt gcatatctcg
    12721 tgcagcttta tttaatctag aaatattttg tgaatgcatc gtagctgtgt gatgcaagcc
    12781 ttgctctaac tcaatagcga catcaagcgc ttcgtcaaaa ttaggaactc ttacaacagg
    12841 aacaatcggc atcaataatt ctacagttgc aaaaggatgt gttttttctg tttccacaat
    12901 aattaaacgt ggtgaaaaat cacaaacaat ccccgcttct tttaaaattt ctgaagcact
    12961 ttttccgact agttttttgt ttgttacgcc tttatctgtg acagctactt tttctagttt
    13021 ttgaatatcg cttggattgg tcacatgtag tgcaccattt ttttccattt ggaacattaa
    13081 gaaatctgcg atgctatcaa ctgcaacaat acttttctcc gcaatacata gaatattatg
    13141 gtcaaaagat gcgccgtcta cgatatcagc agctgctttt tcgatgtttg ctgtctcatc
    13201 tacaatagat ggcggattcc cggcacctgc gccaataact tttttaccgg attgcatggc
    13261 ttgaagaact acaccagggc cacctgtaat aacaaggagc ggtactttcg gatgattcat
    13321 catttcttgc gcggcttgaa tagatggttt ttcgactgta acaactaaat tatcaatgcc
    13381 gcaactttca cggacaatcg tattcaactt ttcaatcaac caaagagaaa tatttttcgc
    13441 acctggatgc gggctataaa atactgcatt cccagctgcg agcatgccga ttgtattgca
    13501 aatcaaggtt tccgttgggt tcgtgcttgg tgcaacagct ccgattacgc catatggaga
    13561 aagttcgtaa agcgtcatgc cattatcacc agtagcaact tctgtataca aatcttccac
    13621 acctggcgtt ttttcaatcg ctaacgtgtt tttcaaaatt ttatctgcta catttcccat
    13681 acctgtttca gcaactgctc gcgctgcaat ggattcaatt tctggataaa gtgcttcgcg
    13741 aattgctttc acaacgttgc ggcgttcttc taatgatttt tctttatagt tattttgtgc
    13801 tataactgct gcttgaacgg cctcgtcaac tgtatcaaaa accccacttt tcgcgccttt
    13861 gaccgttgtt tttactggtg catctttttg ttctgctaat ttttctaaaa gaactttttt
    13921 taccagttgt tcgagttcta atgattccat acagaattac cccttctcta tcattgataa
    13981 tgcttttttc gcaatgtgga tatcctcttc cactgatccg ccgctaatcc ccattccacc
    14041 aataatagct ccatcttttc cgtagatagg aacaccaccg ccaaaggtta caatatcacc
    14101 atttgtcagt gtttctaatt gataaagtgg ggctcctggc tgaactgctt ctgttaattt
    14161 ttccgtgctt gttttcatcg ctacggcgga ataggctttt ttcgttgcca gttctgcact
    14221 tactaaaaga gcgtgctcca tccggtaatt aaatctgaca ttaccgtgcg catcgacaat
    14281 agcaagtgtg actggaacgc caatttcttc tgaaacgatg caaacttggt gcattaattt
    14341 ttcacaaaag gaaaaagata aatcgcttgt aaatgacttt tcttggcccg tttgctctaa
    14401 gtatttggca acaatgagct tggttgcctt atcgagcatt tgtctgaaat cttcttctct
    14461 agcaagaata tacaagaaat ccgataagcg atttacaaat tttaataact cttttcggat
    14521 agctgtttgt tctgacaaac gaactaataa tcgctcacca cgcctagcaa cagtccttgc
    14581 gctatgaaga aatgctcctg ctgtgcttga tccaggaaga acaaaactat cgacttttgg
    14641 caattttgca gtgtaatcat caatgacttt ttcaagttga ttgatgtcgt tttctgtaat
    14701 aataattttg ctagcgaggg atgcttcgtg ctctgttgca agttctgcgc aaacgtaaaa
    14761 caactgccgc tccacgtttc taagcaaagt cttattctca gctgaagtca cgaatttttc
    14821 tgctacacta atttctgcat ttagctcatc aaacgagcca tacgtttcga cacggtcatc
    14881 atattttttc acacgattcc catcaaataa tgcagtcgtt cccttatcgc cggttttggt
    14941 ataaatactc acgagttatt cactccttac ttatcaaaac tatcgacaat tgcaataatt
    15001 gccgaatcaa tcgcactatt tggttccgca aaaacacttc tagctgcatt gccacgagca
    15061 acaagcacat actccccaat tcctgcccca acagagtcac acgctacttc ttctgagcgc
    15121 acatgctctc catttgcatc aaccggttgt acaatcatca attttttacc agtaagtgag
    15181 tcttcttttt ttgtggaaac tacacttcct gttatttttg ccataaacat aacgtcactg
    15241 cctttcccgc actgcaatat tattttttgt taaatattca tttgcaagcg gtgtaataag
    15301 ctgcttttta tatttgcaaa gtgtacttcc gcttgggatt accgcgctat caccgtaaca
    15361 aatcacttga ccatttgaat gaaagagtct ctcaccttta tttgtaaaaa ctgggaactc
    15421 tagctgacta agcattgtat aatcaagcca aggttcacca ttatcatata gttcaagctc
    15481 aatggttact ccataatctg tagctttttc gaaccaagca gttaatgatt ctgctcggtt
    15541 tccactgaga attcgctcaa gaaaatgttt gtttacttgt gttaatcgaa tcgttccact
    15601 ttctataaaa atcgcaactg gatcgcgtgg aagtttgctg atagcgatag aagttttatt
    15661 tgtcgcacga agcttcaagc gctggacaat gattttcact aatttttcta tcatagattc
    15721 tcgctccctg aactcatagc aataccaagt ggcgtgacat actgtggata attcggttga
    15781 aaaacaggcg tcttcaaata gctttcaaac gtatctttga actggctata tgcggaagca
    15841 ccgccaacaa tgtaaagtgg ctctgaggga gatttctcga gatgaacacg ggtaatttct
    15901 gccatttttt ccactactgg acgcatcaca gaaaaatgct cactagaatc tttttgctcg
    15961 cgtttattct gctcggcttt ttctactgga acaccgtaat atcccgcaag aacaagcgtc
    16021 atatgcgttc ccccagttgg ttcatctgcg gtataaatta cttcaccatt ttcaaaaacg
    16081 ctgattccag ttgtcccgcc accaacatct acaactgcgc catcttgtaa tcctagaact
    16141 gctgccgctg cggtcggttc atcaatggtg tacagtgctt ccattccggc gctctcaata
    16201 acattggcga ccaccttttt attgtttcct actgtacctg gcgggatggc tccagaagca
    16261 tgtgttaaag ttatacctaa acatttttct gcgcgttctt tcagtcgtgt cacaacctct
    16321 acagactcgc ggtaattgac aacgagacca tcgcgaacag catctgcgaa ttcaaacgct
    16381 ccaaaaagtg gcacatcatg ttcatctaga acaacaaaca cgatggagga agtacctaaa
    16441 tcgacgccaa ctttcacttt ctgatcagca gaaacttttt gtttaatatc tttattcatt
    16501 agcgctgcaa gctgttccat tcgttcattt gctgtttgta gaatatccat ttcagcacct
    16561 ccttatctcg tcacgacttg attatttttg caaagcacgt accagcaata tctgctgcat
    16621 ttgcttcatc cgtatcaata tgcatttctg gtataaattg attgtttact cgaatcgtac
    16681 aatgatttaa aacaagactt cgcatttctg aacctactag aacggatact tcatcgcctt
    16741 gtttcacacc atattcatgc gccacacttt ctggtaaatg gatgtggcgt ttcgcgacaa
    16801 tcgctccttt tggtaagcag atttcgctat gtttcgaaac gagtttgatc ccaggtgtcc
    16861 cgtcaatatc tccggaaacg cggattggaa tcttcatacc aagcattctt gcatccgttt
    16921 tagaaagctc tacttgcgaa aacttccgaa gtggtcctaa aatgcggaca cgatgcagtt
    16981 cccctttttc tgaaacaaca gtaagggttt gttcagcggc gaattcacct ggttgtttga
    17041 gccatttttt cacttgaata ggttcgtttg gaaaaagttg gttatagtca ttttctgtta
    17101 gatggatgtg gcggttagag actccaatag gaatctctgt ttccacacca ctaagtttat
    17161 ctgttactat ttgcttgatt attgctttta attcttctct ttccacgact tatagacctt
    17221 ttggtagcaa cgtttctaca tcattgtgtg gacgtgggat aacgtggata gattgtactt
    17281 cgccaacgtt acgagctgct gctgcgcctg catcggttgc tgcttttact gcaccaacat
    17341 caccgcgaac cataacagtt acaagacctg aaccgatttt ttcataccct actagtgata
    17401 catttgctgc ttttaccatt gcgtcagctg cttcaattgc gccaacaaga cctttagttt
    17461 caatcattcc aagtgcatta ttcattatta tttcctcctc aaattgggtt tacttctctt
    17521 cttcaaaatg gatacaatct tgtcttggat ccccttttac tcgtgggcaa agcgggtcat
    17581 gacatagatt gcaagtcgct tctgccggga cttcggtttc ttccactttt tctgtttcaa
    17641 ccattacttc cggctgttct ggctctattt cttcttttgg ccaaaatact gtaaaaatct
    17701 cttcccctgg tcgaggaatg acttttttcg caataaaact gtctgaggct attgcggttt
    17761 gttcgcctgc ttcaagcgcc gcattcacag cagcaacatc accttccact ttcacggtaa
    17821 tccagccaaa accttttgct ttttccgtgt ctacaagttg gatattagct acttttgcca
    17881 ttgtatctgc tacggttatc gctgaagcaa gtcctttaat ttcaatcatt ccaattgctt
    17941 gatgcattcc ttcacctcct tatttaaaag gtacaccctt gacaagtcgc gccgcattca
    18001 ttcccatatt tcgctggttt tctagtgtgg ttgcgcaaaa acgatacgct gaaaatagtg
    18061 gtttatctgg gggtaaatta cgataatgaa tcactaaatg atcatttttc agcgtaaccc
    18121 ctactagaag cggagaactc gcagatgctc gaaatgctgc ttgcacttcg tctttcaaag
    18181 acataatttc taattcacat ggaatgcctt cttcttctat tccaaataaa acttgtttaa
    18241 tactgtctgg attcgcgtct acatctgcat gaaaataaat tgctggctta ctaacaactg
    18301 gaatcatgcc ttagcacctc cagctagaat taagcctgtt gcaactgcat ttctagggcc
    18361 ttctttacca cgaatattcc cacggccagc aacgagtgaa taatgagaaa gtgcatcggt
    18421 aattaattgt ggaatctcaa aatcaagggc tgatcctcca acaattacga caaatggaat
    18481 atctcgaata ttcccagttg ggctgacata ttttaaagcg cggatggtat tcgttacaaa
    18541 gacacgctcc ttagctgaac ggcgaattaa cttgattttt tcaattgata catccccagg
    18601 tattggcaca aagccatctg gttttacaat caccactttg gcaaaaactg ttggagaaag
    18661 cggcgtatca aaaaattgca ctgtgccatc ttcatgccga atgtggaaaa tactttcaac
    18721 tttagcaagc ggatattttt taatatcttc ggctaaataa cggtcttcaa ggccaatttc
    18781 tgactggata atcatcgtta ccatatcgcc agcgccggct aaatgagttg cgataatttc
    18841 tccttttccg ttgataatcg aggcatctgt ggatccagca cctaaatcta aaatggcaag
    18901 tggagtatta gttcccggtg tagtaagcgc tccgagaatg gcagcctctg cttctgcacc
    18961 accaattttg acgcttactt gcagttcttg ttcgatttct gaggcgatgg ctgccatttg
    19021 caagtgatca ctttttacca tggaggcaat accaaccgct tgttccatgg aaaactcacc
    19081 tgcaagccca ccttgaacgt ctactggaac aaatgtatcc acagctagca aatcttgaat
    19141 aaaaatatca gctggtaatt tatctgttag cccagccatc gtttggcgca ctttttctag
    19201 catgccaccg atatttgttc ctggttctcc gctagcattg tcgagttttg gaagtgacat
    19261 aatggcttgc atgattttct cagaaccttc tgcgacattg acacgctgcg ttctggatcc
    19321 tgattgaagt tcgatatgcc ccgctggtat tgttcgagct ttgacatcac cttctggcgt
    19381 tttaatcacc accgccgaac gattgccaat taaagctcgt gccacaggaa tgatattttt
    19441 cgtttcatct gaattcaaat gaaatactgt cgcaatacca tatgggttag aaatggtttc
    19501 aatgactttt ccgggagctg caacttcgac agctgctaac atatcgaccg gcactttatc
    19561 aataaaacca acttcatcga caatcggaat cttatggttt agtcggttat gcacgagaac
    19621 cccatcatct gcttgaagaa ttgcagctgt gatttgatag ccattttcga cgtaagtatt
    19681 aatttgcttt gctgcatctt caaaatcgac tgttttcggg ataatcacaa tgtagtcctc
    19741 atcttttgat ttagatgtaa cgtcatccaa cagcaccgtc acacctgaac ccataccaag
    19801 tccccctggt gttttaggat tgtgaccaat cattgtagac tcagtaatga ttgtttctgt
    19861 aatagtttcc attgccacat cgccaatcac tggtgtcgct tcattgatac ggatttcggc
    19921 taagttctcg gttgtcgcat ttactttctc taaagcaagt cgcaacgctt taaaaatccc
    19981 gtgaagattt tgttttgttc ctttgatacc ggttgtgtcc gtaatagcac tagcaacaaa
    20041 cgctacttcc ttcgaatagt ttgccatcgc aagtgccact tccgttgtag aattcccgat
    20101 atcaatccct gcaatatact tcattcattt caccgcattt cctacataat cgcgagcaaa
    20161 aggagaattt taattatcgc cttttaattt cttacgctct tgataaagct gtgctgcttc
    20221 acgaacataa ttagaacaga tagttgcatg ataaacactc tctaattcat ccgcaattgc
    20281 aagtaattct tctcttgagg aacgatacgg acgcattgca ttataaattt ctaaaatgcg
    20341 ttcatctgga acgatcgtta gctctgctgc acgttcgaaa ttattcgcga gtgttgcacg
    20401 tccggcatct cttgctactt gtgcttgcat tttaagcgtt tccgctgtta cacgaacatc
    20461 ttccggtttg attgtgccat ctagaacact tttcaacgta atgtcgtcta atgattttga
    20521 tgtcgatgtt tttacaagtt ctggacgttt tgttccgagt ggataatctc gtactgtcag
    20581 tgtatctccg ctcacttttt gagaagttgt tgtggagact gcgccactat ttacttcttg
    20641 taaaatattt ctaaccatat tttctagtgc ttcttgattc atcattttca cctcactatt
    20701 agtttacttg taattcgact gcgtttttcc cttgaacaac atgttttgtt tctttgatat
    20761 gaagtaaagc tgctttggct tggaatttcg gacgagccat ttgatcattg accattggca
    20821 ctggatttgg tgattcacct ttggcatatt tcgccgcgtt tttaccaatt gctcggtatg
    20881 tttctagcgt aattaatggc gcttgcggga atagctctaa gttagaaagt ggttgtaaat
    20941 ctttttggtg gattaatgct gtaccgcgcg actgaatgcc gatacaaatg ccagaaccac
    21001 ttaatttgtc gccttctact gcaacgaaag ctacgtcaga agaacggaat acacgaacca
    21061 cacgtgcttt taacccttct tcttcaatac ctgcaatcac ttctcgtaaa atttgtttat
    21121 gtggaacacc gacaatattt tttgtttgat atttaccaaa agctggcgcg accgcaataa
    21181 caacttcatc tttttgtcta cccggctccg cgtccccaac ttctgttaaa aagctttcat
    21241 ccgaaactgc aacacttggc tgttcttttt ggaaagaaac tttatcttct tttagctgta
    21301 attcatctag tacttccgag ataattccgc ggagtacctt ttcgttaatt tcaaccatgt
    21361 ctcttaatcc tcctttataa aaaatgggaa gtagcttatt ctaattcgtt tgcatcaact
    21421 gcaacagcga tatcttttaa tttttcccag cgttcgccct ctaagcgata accagttcca
    21481 ggacctgcat aatcatttaa gtcattgacg gaactaatga cattccagtc tttatcaatg
    21541 atggcagatg tatgaaggaa gtccccagat acacgttgtt tcaacatatt tagtacactt
    21601 tcagcaacat catcgaatcc gccagcagat aacgctttaa caacatccag accagtaaca
    21661 ccacggtcca tcatttcagc agctgcttta atatcttcta ccatgttacg ttctggcata
    21721 tctttacttc cacgtgcata cgttgctgct tctacttccg catcggttac ttctggaaga
    21781 cctaatttat caaagacagc ttgaattaca cgtgccgctt tatttctaac tgcaacgact
    21841 tcttcttcgg taactggcgt taaaccaccg tctactttta aatcacgttg caaaatattg
    21901 taatcatcaa agtcatctgc atcaaaattg gaaccagcaa acatattgtc atagttaggt
    21961 gttgcactgt aaccagagga aatataatct gttcctggta aaaattgcat caataaacga
    22021 gctgtacgac gaatatccga gtgcgagaat gtttggtcgt taccagaagc tacttctaga
    22081 tctaacatta cggcaattaa attctctgca agaaccgctc taataccact tggtacggct
    22141 cccggaattc cgatacaact aatcgaacca ttttgtaacc cttgaacacc agccgctttc
    22201 gtaatgaaaa tacagcgaga ttcaagataa agcatcgatt taccttctgc gtaacccatt
    22261 tgaacttcag aaccagttcc ggatgtgaag cgcattttca aaccgcgaga cgcgtaagca
    22321 cttgccaaaa tacctttgga ccaaggtgta tcgtctccgt ctgtaaatac aggttctgta
    22381 ccataaacag aaatcgtttc tgcataacaa gttaaaccac gcataccgag ttctaattct
    22441 gttgcttctt cgagagaaca ttgcgttaat acgccaccac ggccagtttg cgaacctact
    22501 aataagctaa gcgcgttaaa aggtgcataa cgaactaccg caacggttgt ttcttgctcg
    22561 tcaaaaccac gaattgctgc ttctgccgca tctgcagcaa tttgaacagg attatcacgc
    22621 aagtttgtta cgtgggcctg agttgttggt gttctgcgag agcgcatttt ttgcatcgac
    22681 atcatcattt cgacaacgtt catttgtgaa actacttcta ctatttttgc cggtgtcata
    22741 gctgttgtaa gtaaaacgat tttttcccgt ggcacatttg ggtcgcaaag catatttgcg
    22801 agcttcacag aatccatttg cataacttct tccgcacgag ataaatcgac gccatattta
    22861 gcgatgaaat ggtcaattaa gtcaaagtca gcgagttttt tgctgtccat ttcgactact
    22921 tttccatttt ctattttaat gcttggtttc ggatcattcg ggctttccat tgcgattagg
    22981 ccttcttcaa tccattcttt tacaaaacca tcttgattga ccgggcgttt tgctaattct
    23041 tcaaagcgtt ttgatttcat cagtcgttac cctccgttct aaatgtagga tggacgatca
    23101 tttttcggtt catcccctaa agctccaagt aattttttac caatttcacg tgctgaaata
    23161 acagcttgac ggactgcacc agaatctcca gaaatacaaa gaatcacttc attggagaaa
    23221 cttgttccat ctgctggcga ggaatatgca acgacatcta cgttagcgga tttcactgca
    23281 gtatctgcca taacaacgcc aatcccagcc ggtgcaccaa ccataagacc gaatgctttt
    23341 cctacaggtg cgccgaatgc tgtattaagt gcatgacttg ctcgcgctgt atattgaagt
    23401 tcgatgtgtc cagcttcgtt gccgtaaaca tctccgaaag ttttatctaa ttcattcagt
    23461 gcaacttcta ctgcacgttt gacatcagaa acatcatcac caccaaagat aattaaagaa
    23521 ccgtgacccg caccgccttt tgtatcacgt ggtaattcga tttttactac ttctgtattt
    23581 gttgctttta cagcttcatc tgctgccata atatgtgggc ctgcaccagt acgggctcct
    23641 aaaataccta tagaacggta agacttttca agcttcattg cttctaaaag ttgtccgtct
    23701 acattcgcaa tcactaggcc gattgtatct cctattgctg ttcctacaaa ttctgttaat
    23761 tgaactgctt tttcactcat ttgacgtgat cctccatcct ctactagttt ttccggggca
    23821 tcattaaccg tttccattac ctgttttaga atttcgtcaa ttagtttatt ttgctcactc
    23881 atctgacttc accctcactg gtaaaatttc ttccacatca gtatgcggac gaggaataac
    23941 atgtgtactc atcacggtac ctacatttct tgctgctgcc gctcctgctt ctgtcgctgc
    24001 tttcaccgca ccaacatcgc cacgaaccat gacagtaacc agtccagacc cgattttttc
    24061 gtaccctgtt aatgttacat tagctgattt aaccatggcg tcagcggctt caatggcgcc
    24121 gactagccct ttagtttcaa ctaagcctag tgcttcttgc atgggtgtac ctccttctca
    24181 aaataagtat tttactctct cagtataggc aatccggaat ataaatagtt gccgcttcca
    24241 aatagaaaaa aagaagacgc caatcgtgtt ttaacacaat tttgcgcctc caaaaaaaat
    24301 aacgacaaaa agccatccaa taatgcatgg tttgggcttt ctcttatgaa attactctta
    24361 gcaatatatt gttatcttca tggcaagaaa atgtaagcgc attataaata tgctatacta
    24421 agaacgacag aaacacgcca agtctcgccg aaaggggaat agctatgtta ctacagtcca
    24481 aaagcaacga aatgctcatt gaaaaagtaa tggatgagtt ctcagccgca accagtttag
    24541 cctccgttgt tgtagatata cacggtaccg aagtttctag attatgtaac tttactcctt
    24601 tttgccaact tattcgctcc aatcccaaat atcgctccct ttgccaaaaa tgtgatatgt
    24661 ttggtggact ggaagcctcc aaaaccggaa agcctttaat ttatcgatgt cacgccgggt
    24721 taacagattt ctcagttccc atcgtcgtcg aaaaccaact tagcggattt ttacttagtg
    24781 gccaggttat ttgtgaagaa agtagcgaag ttggtaatat tcaagcagaa gaaaccgatt
    24841 ggaaaaatga taaagagctc atctccgcat ttcgctctgt ccctgttttc agctccaaga
    24901 aaattaattc ttctgccgaa atgctcacga ttatctccca gtattacttg aaatccgaaa
    24961 tggaaaaaag ccgggaagag caaaagcaaa aaattgtttt tcatcatgca aaaatagcgc
    25021 atcatgaaga aaataaagaa attcggaaag cacttaagta tatcgagaaa aatctcaacc
    25081 gaccgattac acttgatgaa gtggcaagtc atgtgtacct tagctcttat tattttagta
    25141 agttattcaa aaaagaaatg aatgtgaatt tcatcaatta tgtgaaccaa aagaaaatgt
    25201 cacttgccaa agaaatgttg aaaaatccac gtttgtccat tgataatatc gcacggaacc
    25261 taggcttcac acaaacaagc tatttctgta aagtcttccg gaaagagttt gaagttacgc
    25321 caaaaggcta ccgcgaaaca ttaaaataag ttttatctaa aagtcatgtt ctcttccctt
    25381 taggaatatg acttttttgt tgcctgaaaa acaaaaaaac tttcatccgt catcgaatga
    25441 gagtttatgc acagcaaata agctatacga cccgcatacg ctttttagga ccccgaaaaa
    25501 gagttgcttc cggcttattt ggcgagtatc ctgacttggc ttcatccaac aatcgaacct
    25561 tcccatacgc taaaaacgta cagtggctat ctcgattctt gtccacctta cagttgcggg
    25621 ggcagtttcg gcatcgcacc gaattcctct ttcagaaatg tacatacatt ccaccaacat
    25681 aagacctatt taactaccta catcttacca caaagtattt ataaaaaaag cgttttcatc
    25741 tgaaacaaca aaaatctact attgattaga aataagaaaa tgttgagatt tgttgtccca
    25801 gagcgaataa catccttgct taaaatcgat atcccaatat tgtgctatag tttgtttttg
    25861 taaaaaaagc gcaatgactc gtaaaacacc gagatgaccc acgagcaaca ccgtatcaag
    25921 ttgctgccat ttttccattt cttcttctaa tatcgcaact actcgctcat aaaatatcgg
    25981 aaaactttcc ccatttggaa atagtgccgt ttgccagtta ttacagtatt c
//
LOCUS       DABQVC010000015        25231 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.015,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000015 DABQVC010000000
VERSION     DABQVC010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 25231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25231
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.015"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..3987
                     /gene="gltB"
                     /locus_tag="IBJ56_000432"
     CDS             <1..3987
                     /gene="gltB"
                     /locus_tag="IBJ56_000432"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HAM3416716.1"
                     /translation="GMLLPEQINQYYLDLADPAYVSAFALVHSRFSTNTFPSWERAHP
                     YRYLIHNGEINTQRGNVNWMKAREKRAESDLLGEDLAKLLPIIDESGSDSATLDNALE
                     FLVQAGRSLPHAAMMLIPEPWDKNPHMTDPKRAFYEYHSTLMEPWDGPTSISFTNGRV
                     IGTILDRNGLRPARYYETKDHTIIYSSETGVVPVDPSEIIRKETVGAGTMLLIDLEEG
                     RIVTDAELKEELTTEKPYREWLEAEMTEIADLATADLHYEAMDKSERFKKQRAFGYTQ
                     DELNKILIPMVTEKKDPMGAMGYDAPLAVLSQRPQVLFNYFKQLFAQVTNPPIDGIRE
                     ETVTSAMTLLGDEGNILNPTAQNANRIRLKTPILSRKEFAALEQQTKFAQPTVTLPIL
                     FKAEERDGLEARLESLFVEADEKIAAGAELLILSDDGVNADWIGIPSLLAVSGLHHHL
                     VKAGTRTQVSIVVKTAEARDVHQCALLIGYGADAVFPSLAIDTFDGLIKEGRMKGFTL
                     DEAESRYIEAITDGILKIMSKMGISTVQSYRGAQIFEAIGIGDDVIKHYFPGTASQIG
                     GIPLEVIAQEAWLRHREAYHDIGYQSFTLNTGGEYQWRSNGEYHVYNPLAIHSLQQAT
                     RENDRETYNLYSDLMQNQNNAFLRGLLTFTSDRKPIPLDEVEPAEAIFKRFKSGAMSY
                     GSISQEAHEALAIAMNRIGGKSNSGEGGENPNRFTPDENGDWRRSAIKQIASGRFGVT
                     SHYLVNAEELQIKMAQGAKPGEGGHLPGNKVYPWISKTRGSTTGVGLISPPPHHDIYS
                     IEDLSQLIFDLKNANQNARINVKLVSKTGIGTIAAGVAKGNADVILVSGYEGGTGAAA
                     RTSIRHAGVPWEIGLAETHQTLLLNGLRNKVVVETDGKLMTGKDVLVAAMLGAEEFGF
                     ATAPLVTLGCVMMRVCHLDTCPVGVATQNPELRKKFSGSADYVVNFFHFIVAEMREMM
                     AELGFRSLTEIIGHKEFLTTHEKKEAHWKAKYIDFSNMLYSDDFYKNQVQYCTKQQDH
                     KIDQTLDMRELVPLIQPALENGEKVTGTFAVRNVDRAIGTIAGSFISKKYGAEGLPED
                     TISLDFVGSAGQSFGAYTPLGMTLRIHGDANDYFGKGLSGGKLIVSPDAKTPIKPHDS
                     AIVGNVTLYGATGGYAYMHGKAGARFAVRNSGATAVVEGIGDNGCEYMTGGAVVVLGE
                     IGENFAAGMSGGVAYLYTNNKQATTAKINHELVNSRSTLNTSELTKLKQLIEQHANLT
                     GSNFAKNILQNWEAEKANFIFVIPNEYEMMLTRITTLEQTGKTHDEAELQAFYEHKDG
                     KLVAGVAK"
     gene            4002..5471
                     /locus_tag="IBJ56_000433"
     CDS             4002..5471
                     /locus_tag="IBJ56_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HAM3416717.1"
                     /translation="MGKATGFMEYDRIPSPGRDPKSRTRDWNEYSLPMPVADLTLQAA
                     RCMDCGVPFCSVGMEIKNGVSGCPLHNLIPEWNDAVYRGDWYEALQLLLKTNNFPEFT
                     GRICPAPCEGGCTVAISEPAVGIKSIEKAIIDRGFEEGWIKPAPPKKRTGKRIAVIGS
                     GPAGLACADQLNKAGHSVTVIEKSDRIGGLLMYGIPTMKLEKEQVTRRVNLMAEEGIE
                     FVTGVAAGTDVTFAELREEYDSIVLATGAGNARDIPLAGRDAAGIHFAVPYLSQSTRD
                     NLDNGGVQTLSAKGKNVVIIGGGDTGADCVATALRQGAKSIYQFGIQDKLPELRDGEN
                     PWPQYPRVFKMDYAHEEAEAVYGRDPREYLINTTSFEKDEAGNLIGLHTVEVEENKAE
                     RKYTPVEGSEKYFEVDMVLIAIGFAGTTEDIFTNFGVGKTDRHTIDAAKGFYRTSEEG
                     VFACGDARHGQSLVVTAIAEGREAAREVDFYLMGETFLP"
     gene            complement(5516..6346)
                     /locus_tag="IBJ56_000434"
     CDS             complement(5516..6346)
                     /locus_tag="IBJ56_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HAM3416718.1"
                     /translation="MNQYRQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEI
                     LKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFGLFLNAMAGYGFAKFK
                     FKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLFRQ
                     FMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIA
                     NDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK
                     "
     gene            complement(6364..7257)
                     /locus_tag="IBJ56_000435"
     CDS             complement(6364..7257)
                     /locus_tag="IBJ56_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3416719.1"
                     /translation="MKQFLNKNTPYLFISPALFLLLLFSLLPILLAFVISFTDIDLVG
                     LADYSKINFVGVDNYVNIMQDPVFLKSIFNTLFYVIIGVPLVIVCSLGIALMINFSQA
                     KIFQFFRLIFYTPSITNVVAVAVVWSYLYNPRFGLLNYLLSFLDLGPVPWLQDPTIAK
                     LSLIILAVWRAIGVNMIIFLAALQGIPREYYEAASLDGANSRQQLFKITVPMLRFAIF
                     FVTVTTMIGWLQFFEEPFVMTEGGPLDSTNSVALFIYQNGFQLSKFGYAAAGSFILFI
                     AIIIITIIQFRIQRKNNDGDI"
     gene            complement(7318..8562)
                     /locus_tag="IBJ56_000436"
     CDS             complement(7318..8562)
                     /locus_tag="IBJ56_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HAM3416720.1"
                     /translation="MKKKMFVVLALVLSLSLVLMACGGSKDDANSGDSKVLNVWAMGD
                     EAKSLKELAQKFTKDTGIEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFV
                     EAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKK
                     VGYNEAPKTWDELSDAALKLSKRGKDMYGFAIDPNEQTTGFIFGRQNGSPLFDKDGQP
                     VFNKKPFVDTVSYLDSFIKNGSAPDTDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDT
                     APDIDGKWATAVLPKKENNESSLGGANLSIFKYSDKKDDALKFMDYMSQPDVQLSWLK
                     DTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQFEEIAQLYGKSWEQIYR
                     GGADVQTQMDTFNDQVEALLKK"
     gene            8991..11162
                     /locus_tag="IBJ56_000437"
     CDS             8991..11162
                     /locus_tag="IBJ56_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase"
                     /protein_id="HAM3416721.1"
                     /translation="MKQEKVQDLVNQMTLDEKIAQCLQLSPFLFKGTNKNAELTGPLL
                     QEMKLTDAHTENAGSVLGSSSALDMIGIQEAYLKTNRLGIPLVFMADVIHGYKTVFPI
                     PLALGCSFDRETVRVMAEVSALEATADGHHVTFSPMLDLVRDPRWGRVMESTGEDPFL
                     NSELGKAMVDGYQGDASKLHENLEQMAACVKHFAAYGAAEAGLEYNTVNMSTRELYQN
                     YLPAYNAAIQAGAKLVMTAFNVVDGIPATMNKWLNRDVLRDEMGFDGVLISDWGAVAE
                     VINHGTARNPKEAAQFSMEAGVDLEMMTTCYIHELKGLIEEGKLSESLLDEAVLRMLT
                     LKNDLGLFEDPYRGLKNNDRTKDILTDDSRGKARAAGIESAVLLENKNRLLPLAKEAK
                     IALVGPLATSPDILGGWNVYGEEKDGINVETGLREVFETVEVVSTEYTELSEEDKVAV
                     KAAVENMDVVVLALGEKNEWGGEAGSLATIRLPEAQYELAKFVQTLGKPVVITLFNGR
                     PLEVKELAESSDALLELWFPGTEAGRVTADLLSGASNPSGKLSMSFPQTTGQIPVYYN
                     HLRTGRPQTPENKGERYVSHYLDIPNEPFYPFGYGKSYSKFELKTSSLPKELNLGESL
                     HVEVTIKNISDIAGKEVIQVYLQDVTASISRPVKELKAFEKVALQAGEEKTVRFELTS
                     EAFSFYNQQLEKVQEPGLHRVFVGTSSEDVDVFEVEVGGYV"
     gene            11159..14419
                     /locus_tag="IBJ56_000438"
     CDS             11159..14419
                     /locus_tag="IBJ56_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellobiose phosphorylase"
                     /protein_id="HAM3416722.1"
                     /translation="MTMLKEIKKADLSAAFYPSGELAWLKWKDIMLNQVIQNPLENRL
                     SQIYVRAHLGDKIEIYPLLSRDAEVGFNENGVEYRGVVGPFRYSVQMHFHTRGWFYDV
                     SVDGDLEFDFVYLQDLGLAEQAAVRTNEAYMSQYIDYHVTEGATGFTVQARQNQPQSE
                     RFPAVQIGALTKIVGYATDGFDIYGTNYKLTSELANLKEKSLPNRVYQYEFAQISLQT
                     ELFTNHGETSFYGYATENQPKASGAPIENLAELKSNISGQSYQTSTKATLNKHIGTPI
                     IGETISDNWLQENFPDRIQEEQQNGDLLSFFTPNYAHVVMREKEAELERPHGSILLDK
                     VDVLNPEATLSATTYMYGAFLSQLVAGNTNMNKWNSHARNPLNILQTSGLRIYIELDS
                     ELRLLGVPSVWETSTNYSTWYYQWNDDLITVKTTLTAESKEAFVTVHSEKGRSYKLVL
                     TNQVTMGTNEYDTTVKKEVKEGIVTYFPAEDSPILETYPALQFRVDGTYNELTDERYF
                     AKEYVGTAGLDVFVFEPSDKATFHVQAKLTDEFSEPTEDLEANNKVIRASYDELTAQF
                     HLNHQSTTAEKLNLTVYWYAHQMLVHYASPHGLEQYSGAAWGTRDVSQGPFEFFLATG
                     NKAVLRKLVLTIFSHQYQDTGDWPQWFMFDKYTSIQQEESHGDVIVWPLKIIGDYMEM
                     SGDTGILEEAIPFVDRESKTFTKEQGTLLEHIELAVETIEARFMKGTALSNYGDGDWD
                     DTLQPANAQLKKNMVSSWTVALTYQTFKRLAAFLPVGEKYETLANNVQADFAKYMTND
                     TDVIPGFLYLEEGKAPVWMIHPEDKDTNIKYRLIPLTRSVISELVDKKQASRNFEIIG
                     EHLLHPDGVRLMSEPAHYAGGVSTHFKRAEQAANFGREVGLQYVHAHIRYIEALAKIG
                     DKSAWHMLDVINPINIKEVVPNAALRQSNTYFSSSDAAFLDRYQAQNEFSRVKEGSIP
                     VKGGWRIYSSGPGIYLHQLISSVLGIRQTEDALIFDPILPEELDGLECHIELDNYPLD
                     LTFESADEGSIVVNGEKQPVENEANLYRTGALVLPKKNLTTKCSQITIKFSKNNRL"
     gene            14467..15432
                     /locus_tag="IBJ56_000439"
     CDS             14467..15432
                     /locus_tag="IBJ56_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HAM3416723.1"
                     /translation="MVGIKDIAKKAGVSISTVSYALNGSPKVTEKTRKRIMTIANELN
                     YIPNMAARTLKTRETKIIGVYLTNYGGIFYGTLLEGLTQTLYKHGYELIACSGTKTHR
                     FLPEKMIDGAIILDANFPSSEIINYANRGHKLVVLDRELTHENVSQVLLDNKGGATLA
                     IDYLSTNFKGDFYVITGPEDSYDARVRLETAKQELARSGDKKVHIIEGDFSEESGEKA
                     AAIITENWKAPVSVFALNDNMAIGMYRYFAGTDLEIGKDVRIIGFDNTDISEYLVPRL
                     ATIEYSKYKWGAVAADKLVELLEGGKAENEIIYTTRISGPSVSNN"
     gene            15492..16475
                     /locus_tag="IBJ56_000440"
     CDS             15492..16475
                     /locus_tag="IBJ56_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAM3416724.1"
                     /translation="MKLGIMGTNWITDSFIEGAINSGEWNLTAVYSRTEEKARAFGEK
                     YGDLTYFTDIEEMGKSDALDAVYIASPNALHYQHAVSLLKNKKHVIVEKPIFSTVAEL
                     EHAHQIARENNVFLFEAARHIQEPNFKRLQENIEKVGTIHGATLAYMKYSSRYDQVLN
                     GEEPNIFSLKFSGGSIVDLGVYPLYSAITLFGEPIKATYFATKLPTGVDGLGPIILEY
                     PTFNITIIQGKNSQSFLPSEIYGQKGTLIVDPLTGIEKITFYDNATKEETELAGPVVA
                     NDMQFEAAEFARIIEQSDRDTYEYLADLSLKVLRVSNELRHQNDIWFDAEK"
     gene            16596..16964
                     /locus_tag="IBJ56_000441"
     CDS             16596..16964
                     /locus_tag="IBJ56_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3416725.1"
                     /translation="MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKL
                     AVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADEISERFLEEARS
                     IGLDDQAAIELLIKRSRNYE"
     gene            16957..17637
                     /locus_tag="IBJ56_000442"
     CDS             16957..17637
                     /locus_tag="IBJ56_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416726.1"
                     /translation="MNENLITITGLTKKYRKRKPLNDINLSLQKGKIIGLLGPNGAGK
                     TTLLNAISGLLKPTSGTINLAEHSRIAYLPSEDILPNMVIRDYFQIYRSFFPDFDHEK
                     AKQMIHTFGINVKENTKYLSKGNAAKVMLALILCRDVDLYLLDEPFSEIDLISRDDLI
                     KSIATFLKEDATLVVTTHLIQDMEMMFDEIIFLKRGKIIEQIDTETLREEYGKSVVDY
                     YREVFGHA"
     gene            17630..18403
                     /locus_tag="IBJ56_000443"
     CDS             17630..18403
                     /locus_tag="IBJ56_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416727.1"
                     /translation="MLKAHWKLEWNAHRYIFFATFVGWLICLLIGLFSKLGNGLLEPL
                     VMESDIDGVVFGSGDGVFIALIGFVGASWLLIWLLLFMAAARSGIYDENRYLFFQTET
                     PIWKILLNKLIIVLIETAILTAGVIVIIISLAIIGGAEISFSVGLTIIFDTFLAIGLN
                     TFSFVCILFLATALSMVPVNGFRVGFIGALIYFVLINAIQVSIGTNFLSKSSSEIHFY
                     YSLFSSVHFNFIQMGFNLLMALVYFFLATKILNKSADLQ"
     gene            18446..19774
                     /locus_tag="IBJ56_000444"
     CDS             18446..19774
                     /locus_tag="IBJ56_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HAM3416728.1"
                     /translation="MTESNIPSFWAEKWQEHGYETPTEIQSAMYQPIKDGADVLAVSP
                     TGTGKTVAYALPTLEKIEAIPKTQWLVLAPSHELVMQITEVIRSWLPSDELTVISLIG
                     GANVKRQIEKLKKKPQIIVASPGRALELIKQKKIKMHEIKTITLDECDQLLRQENFKS
                     TLEIVESAVRDRQLTLVSATKLENPDMFFAQTENTPVMLEVTAKPEELTNVEHLYMDV
                     ESRDKATLLRRISHIKDMRGLVFVKDKPRMEILLEKLHYDKVKAAGIHGEIRKEKRKK
                     YLDDFKKGTLTYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHRSGRTGRMGKSGT
                     VITFANPREIRTLKQYLTIHNLKGKQVRFYQGKLLDGAVPENKIAKKASRPPKKVQKG
                     KKDDVKKPFRKDKPTETAGKRKDKPTNASKPTRNNKPNKFNKKPTNFKRS"
     gene            19908..22586
                     /locus_tag="IBJ56_000445"
     CDS             19908..22586
                     /locus_tag="IBJ56_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HAM3416729.1"
                     /translation="MSSRKEEVLQLLNEKEEKVSAADVAELLQMDRANASRYLNDLFK
                     EKRIDKLPGKPVFYQAIKKAERASQHAGNIQESAFGRLIGSEDSLKVSIQQAKAAILY
                     PPNGLHSLILGRTGTGKSLFAECMYQFAKESETIPADAPFVSFNCADYAQNPQLLFGH
                     IFGVIKGAYTGAEETREGLLKKADGGILFLDEIHRLPPEGQEMLFTFIDKGEFRPLGE
                     SANVHHAQVQIIGATTESPDNFLLETFTRRIPMTITLPSLAERNLEERYQLVEFFLNQ
                     EATRLHQSIRVHRKALIAFLLYHASANVGQLQRDLKLACAKAFLHYKTKTANYILIEQ
                     DDLPIHVQKGLLHLKDEPEKLNRLIDVNKAIFKFVDTSDEFVETEDVHDVYHAIQEKA
                     DQLMKEGKDQSELEEALYVDVDQYFHNYMVQLPTHQTAKEIIAPAVWELTEKVYAMAE
                     EKLNRKYNEKMKFAFSLHLQSTIERVREQKHIIHPDLNNIRKKYPKEFQVAIDLSALI
                     EQELSIEIPFDEIGFLTMFLTEEVVDTSLSQENQVEVIVMMHGRSTATSMVETVQELL
                     SIESGIALDMPLTVEVKAMYEKLKQTVIKLNPVKGVLILSDMGSLTSFGNMLTEELGI
                     RTKTVTMVSTPVVLEAMRKASLGRGLEDIYQSCEQLFENKYKAHVLRAKPVKNAVIFT
                     CFTGEGVAEQLRKVVAPIIDETKIEIIVLQFLHKEAFRERIDQLMEEYNILAIMGSVA
                     FEYRDIPFFSALEVLSEGGLGIVSRILNDEVPYEKLIASLEGNLQAVSSAEQLVYFLR
                     KVISELQLQLNVILESGVDIGMILHLAFLIERVKLGAVDREFPDLNEFAKNHMVEMQI
                     TQQMMENVEIEYDIVIPQSEIAYLTQMMLSNQVEEN"
     gene            22746..23054
                     /locus_tag="IBJ56_000446"
     CDS             22746..23054
                     /locus_tag="IBJ56_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3416730.1"
                     /translation="MNNIMLVCSAGMSTSLLVKKMTEAIEKQQVDAAVIAVAEADFDK
                     YKGNVDVVLLAPQVRFLEKNLKRVLDPLGIPVAIINGIDYGTMDGEKVLNDALAMIEK
                     "
     gene            23124..23426
                     /locus_tag="IBJ56_000447"
     CDS             23124..23426
                     /locus_tag="IBJ56_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HAM3416731.1"
                     /translation="MELEQTIMQLIVHGGNAKSDAMLAIEAAKKGDFDAADEQIKSAE
                     AALLEAHHSQTSLIQGEARGEKAEVSLLLVHAQDHLMNAITFKDLAKEIVDLYRSK"
     gene            23448..24536
                     /locus_tag="IBJ56_000448"
     CDS             23448..24536
                     /locus_tag="IBJ56_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF871 domain-containing protein"
                     /protein_id="HAM3416732.1"
                     /translation="MRKLGISVFPQHVALEESLEYIETAAKYGFSRIFTCLISANDEA
                     EFAKLETICKRAKELGFDVIADVDPTVFESLNITYKELDRFKELGLAGLRLDLGFSGS
                     EEAAMSFDDTDLKIELNISNGTRYVENILSYQANVGNIIGCHNFYPRKYTGLSREHFL
                     RTSKQFKDLNLRTAAFVSSNSGEFGPWFVVDGGLPTMEEHRGVDITVQAKDLWNTGLI
                     DDVIVGNMFASEDELRALSELNRNELQLAVEFLDGATDVEKEIVLTQKHFNRGDASEY
                     VLRSTMTRVNFKQFDFPAHDTNTISKGDVTIDNDGYERYKGEMQVALQEMENSGNTNI
                     VARIVPEERYLLDTILPWQHFRLVEKKK"
     gene            complement(24628..25212)
                     /locus_tag="IBJ56_000449"
     CDS             complement(24628..25212)
                     /locus_tag="IBJ56_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3416733.1"
                     /translation="MNNYEKRTLKKKTAIIQAALSLFGEQGFSDVSIKDIAALADVSQ
                     VSIYNYFGSKEALVGECASIIMQDTITLAEEILASEGTFTQKLERALKLCNAEINLSL
                     SKFISQEASKDAQFITLLVNNINALKNEIYMKYIAIGKQEKIIDNRLSDQSIQLFIEA
                     INGLGFTVPEEELEEKQAEIVQLFLYGLIGKCKE"
BASE COUNT         8335 a         4527 c         5351 g         7018 t
ORIGIN      
        1 ggaatgttac taccagaaca aattaatcaa tactatttag atttagcaga tccagcatat
       61 gtatcggctt ttgcgctagt gcattctcgt ttttcgacga atacttttcc tagttgggag
      121 cgggcgcatc cgtatcgata tttaattcat aacggtgaaa ttaatacgca acgtggtaat
      181 gtcaactgga tgaaagctcg ggaaaaaaga gcagaatctg atttacttgg agaagattta
      241 gccaaattgc taccaattat tgacgaaagt ggtagtgatt cggctacttt ggataatgcc
      301 ttagaatttt tagtgcaggc aggccgttcg ttacctcatg cggcaatgat gcttattcca
      361 gaaccatggg ataaaaatcc gcatatgacg gatccgaaac gtgcttttta cgaatatcat
      421 agtacattaa tggagccgtg ggatgggccg acatccattt cctttacgaa tggtcgagtt
      481 attgggacga ttttggatag aaatggctta cgtccggcgc gttattatga aacgaaagac
      541 catacgatta tttattcttc ggaaacgggt gttgtgccag tggatccgag tgaaattatt
      601 cgcaaagaaa cggttggcgc gggaacgatg ttgttaattg atttagaaga aggacgaatt
      661 gtgacggatg ctgaattaaa agaagaacta acaacggaaa aaccgtaccg tgaatggttg
      721 gaagcagaaa tgacagaaat tgccgattta gcaacagccg atttacatta tgaagcaatg
      781 gataaatcag aacgttttaa aaaacaacgc gcatttggtt acactcaaga tgagttaaat
      841 aaaattttga ttccgatggt aacagagaaa aaagatccaa tgggcgcaat gggttatgac
      901 gcaccacttg ctgttttaag ccaacgacca caagtgttat ttaattactt taaacaactt
      961 tttgcgcaag taaccaaccc tccgattgat gggattcgcg aagaaacggt aacttctgcg
     1021 atgacactac ttggtgatga aggtaatatt ctaaatccaa ctgctcaaaa tgctaaccgg
     1081 attcgcctga aaacaccaat tttatctcga aaagaatttg cggcacttga gcaacaaaca
     1141 aaatttgccc aaccgactgt cactttacca attttattta aggcagagga aagagatggt
     1201 ttagaagctc gcttagaatc attatttgta gaagcagatg aaaaaatcgc agctggggca
     1261 gaattgctca ttttatcaga tgatggggta aatgcggatt ggattggcat tccttctctc
     1321 ttagctgtca gtggattaca tcatcattta gttaaagctg ggacgcgtac acaagtgagt
     1381 attgttgtga aaacagcgga agcgagagat gtccatcaat gtgcgctctt aattggttac
     1441 ggggcagacg cggtatttcc aagtcttgct atcgatacgt ttgacggctt gattaaagaa
     1501 ggacggatga aaggatttac acttgatgag gcggaaagtc gttatattga agcaattaca
     1561 gatggaattc taaaaatcat gtccaaaatg gggatatcta cggtgcaaag ttaccgtggt
     1621 gcccagattt ttgaagcaat cggtattggt gatgatgtaa ttaaacatta tttcccggga
     1681 acagcctcgc aaattggcgg gattccactg gaagttatcg cgcaagaagc ttggctccgt
     1741 catcgcgaag cctatcatga tatcggctac cagagtttca cgcttaatac aggcggggaa
     1801 tatcagtggc gctcaaacgg agaatatcat gtctacaatc cactagcgat tcattctttg
     1861 caacaagcta ctcgagaaaa tgaccgtgaa acgtataatc tttattcaga tttaatgcaa
     1921 aatcaaaata atgccttttt aagaggatta ctcactttta caagtgatcg caagccgatt
     1981 ccactggacg aagtagagcc ggccgaagcc atttttaaac gatttaagtc tggcgcgatg
     2041 tcttatggtt cgattagtca agaagctcat gaagcgcttg ctatcgcaat gaaccgtatc
     2101 ggcgggaaaa gtaatagtgg ggaaggcggc gaaaacccga accgatttac cccggacgaa
     2161 aatggcgatt ggcgtagaag tgctatcaaa caaattgcat ctggtcgttt tggtgtaaca
     2221 agccattact tggtcaatgc agaggaactg caaatcaaga tggctcaagg agcgaaacct
     2281 ggtgaaggtg gacacttgcc tggaaataaa gtctatccat ggatttcgaa aacgcgtggt
     2341 tcaacaactg gtgtaggatt gatttcacca ccgccacatc atgatattta ctcgattgaa
     2401 gatttgtctc aattgatttt cgatttaaaa aatgcaaatc aaaatgcacg tatcaatgtg
     2461 aaactagttt cgaaaactgg tattggtacg attgctgctg gcgtagcgaa ggggaatgcc
     2521 gacgttattt tagtaagcgg ttatgaaggc ggaactggtg cggcggcaag aacaagtatc
     2581 cgtcacgcgg gagtgccgtg ggaaatcggc ttagctgaaa cacaccaaac gctcttgcta
     2641 aatggactta gaaacaaagt cgttgtcgaa acagatggca aactaatgac aggaaaagac
     2701 gttctggttg ccgctatgct cggcgcggaa gaatttggtt ttgcaacggc accactcgta
     2761 acacttggtt gcgtcatgat gcgggtttgt cacttggata catgtccagt aggtgtagcg
     2821 acacaaaatc ctgagctgcg gaaaaaattc agtggttcgg cagattatgt tgtgaacttc
     2881 ttccatttta tcgttgctga aatgcgcgaa atgatggcgg aacttggctt tagaagttta
     2941 acagaaatca ttggacataa agaattttta actactcacg agaaaaaaga agcacattgg
     3001 aaagcaaaat atatcgactt ttcgaatatg ctttatagtg atgattttta taaaaaccaa
     3061 gtccaatatt gcacaaaaca acaagaccac aaaatcgacc aaacgcttga tatgcgcgaa
     3121 cttgtgccat taattcagcc ggcactagaa aacggtgaaa aagtaactgg aactttcgct
     3181 gtacgaaatg ttgaccgcgc gattggaacg attgctggct cctttattag caaaaaatat
     3241 ggtgcagaag gattaccgga agataccatt tcacttgatt ttgttggttc agctggacaa
     3301 agcttcggtg cttatacgcc acttggcatg acgctccgaa ttcacggtga cgccaatgat
     3361 tacttcggaa aaggactttc tggtggcaaa ttgattgtta gtccagatgc taaaacacct
     3421 attaaaccgc atgattccgc gattgtcggg aatgtaacgc tttacggtgc aactggtggt
     3481 tatgcctata tgcacggaaa agcaggtgca cgtttcgctg ttcggaatag tggtgcgaca
     3541 gctgttgtgg aaggcatcgg tgacaatggt tgtgaatata tgacaggcgg tgcagtagtt
     3601 gttctcggtg aaattggtga gaactttgcg gctggaatgt ctggtggagt tgcttatctt
     3661 tatacaaaca ataaacaagc gacgacagcc aaaatcaatc atgaactcgt aaacagccgt
     3721 tctactttaa atacttccga attaactaaa ttaaaacagc tgattgaaca acacgcaaac
     3781 cttacaggaa gcaattttgc taaaaatatt ctgcaaaatt gggaagcaga gaaagcgaat
     3841 tttattttcg tcattccaaa tgaatatgaa atgatgctga cgagaatcac gacgcttgaa
     3901 caaactggaa aaacacatga tgaagctgaa ttacaagctt tttatgaaca taaagacgga
     3961 aaattagttg ccggagtggc gaaatagaga ggagtgaaac catgggaaaa gcaactggat
     4021 ttatggaata tgaccgaatt ccctctccag gacgtgatcc gaaaagccgg acacgtgact
     4081 ggaacgaata tagtttacca atgccggtag cagatttaac attacaagcc gctcgttgca
     4141 tggattgtgg cgtaccgttt tgtagtgtag gaatggaaat taaaaatggt gtttcaggct
     4201 gtccgctgca taatttaatt cccgagtgga acgatgccgt ttatcggggt gactggtatg
     4261 aagccttaca actactctta aaaacaaata attttccaga gtttactggt cgtatttgtc
     4321 cggcaccgtg tgaaggtggc tgtacggtgg caatttcgga acctgctgta gggattaaat
     4381 ccatcgaaaa agcgattatt gaccgaggtt ttgaagaagg ctggattaaa ccggctcctc
     4441 ctaaaaaacg taccggtaaa cgaattgctg tgattgggtc aggaccggct ggacttgcct
     4501 gcgccgatca attaaataaa gctggccata gcgtaacggt cattgaaaaa agtgatcgca
     4561 ttggtggctt attaatgtac ggtattccaa cgatgaaact ggagaaagaa caagtaacgc
     4621 gccgagtgaa cttgatggcg gaagaaggaa tcgaattcgt cacaggtgtt gcagcaggga
     4681 cagatgttac ttttgcagaa ctacgcgaag agtatgattc tatcgttctt gcgacaggag
     4741 cagggaatgc gcgtgatatc ccacttgccg gacgtgatgc agctgggatt cacttcgctg
     4801 ttccgtattt atcgcaaagt acgcgtgata atctggataa cggcggggta caaacacttt
     4861 ctgctaaagg taaaaatgtg gtgattatcg gtggtggaga tacaggtgct gactgtgtgg
     4921 caactgcgct cagacaaggg gcaaaaagta tttatcaatt cggtattcaa gataaactac
     4981 ccgaattgcg tgatggcgaa aacccttggc cgcaatatcc acgtgttttc aaaatggatt
     5041 atgcgcacga agaagcggaa gcagtgtatg gaagagatcc acgtgagtac cttattaata
     5101 caacttcttt tgaaaaagat gaagcaggaa atcttattgg actgcatact gtagaagtag
     5161 aagaaaataa ggcagaaaga aaatatacac ctgtagaagg tagcgaaaaa tactttgaag
     5221 tagatatggt tctaattgcg attggttttg caggaacaac cgaagatatt tttacaaact
     5281 ttggtgtagg aaaaacagat cgtcatacga tagatgctgc taaaggattt taccgcacaa
     5341 gcgaagaggg cgtattcgct tgcggagatg cgcgtcacgg tcaaagttta gttgtaaccg
     5401 cgattgcaga aggacgagaa gcagctcgtg aagtagactt ttacttgatg ggtgaaacat
     5461 ttttaccata ataaaaaaga gcttatccta aatgggtaag ctcttttttg actaattatt
     5521 tcattccaga aacgttgaag ccttttaaaa tgtacttttg gaatgtcatg aaaatcaaga
     5581 taattggaat aaccatgaag gttgctccgg ccatttgtaa ggcgtagttg ctgccatatt
     5641 gaccttttaa taattgaagg ccaactgata gggtgtagaa tttttcgtcg ttggcaatga
     5701 ttaacggcca taagaacgag ttccaaccag cgatgaaagt aagaatacct tgtaccgcaa
     5761 gcacagggcg ggaaataggg ataactatcc gccagaaaat ataaaattca ctagcgccat
     5821 caagtcttgc tgcttcgagt aaatcatcgg atatggtgga cataaattga cggaataaga
     5881 aaattccgaa tgccccaaca agtcctggaa gcacaatccc tgtcatcgta ttcgttaatc
     5941 cagccgcatt aagcagcaag taaaccggaa tcattgttac ttgtcctgga atcatcattg
     6001 tagcaagaac aagataaaat aacttgtttt tccctttaaa tttaaattta gcaaagccgt
     6061 aacccgccat cgcatttaaa aataaaccga aaaacgagaa gaacacaatg attaacgtat
     6121 tttttaagta aatagcaaag tccatttcag taaatagttt ggtgaaatta tctagtgtga
     6181 aagtttctgg ccaaatagta ggtgggattt ttaaaatttc agcatccgtt ttcaaagagg
     6241 agagaaccat ccaaatgaac ggtaaaatca taaagaatcc gccaaccgtt aaaattgtaa
     6301 ttacggcaat ttgagcgccg cgcgattttt gtctatattg attcatttat aaacactcct
     6361 ctcttaaata tccccatcat tatttttgcg ctgaatccgg aattgaataa tcgtgataat
     6421 aataatcgcg ataaacaaga tgaacgatcc agcagcggca taaccaaatt tacttaattg
     6481 gaaaccgttt tgatagataa agagggcaac agagttcgta ctatcaagtg gtccaccttc
     6541 tgtcataacg aacggctcct cgaagaattg caaccaacca atcatcgttg taactgttac
     6601 aaagaaaatg gcgaaacgaa gcattggaac cgtaatttta aataattgtt gacggctatt
     6661 tgctccgtca agggaggctg cttcataata ttcacgtgga atgccttgta gtgcggctaa
     6721 gaaaataatc atatttacac cgattgcccg ccaaacagct aggataatca gtgataattt
     6781 cgcaatagta gggtcttgta accatggaac tggtcctaag tctaaaaacg agagcaaata
     6841 gttaagtaaa ccaaagcgcg gattatataa gtaactccaa acgacagcta cagcaacaac
     6901 gtttgtaatt gaaggagtgt agaagattaa gcggaaaaat tggaaaatct tcgcttgtga
     6961 gaagttaatc atcagcgcaa taccaagcga gcagacgata acaagtggaa cgccaataat
     7021 tacatagaaa agcgtgttaa aaatagattt taaaaatacc gggtcttgca taatattgac
     7081 gtaattgtcc acaccaacaa agttaatttt agagtaatcg gcaagcccga ctaaatcaat
     7141 gtccgtaaaa ctaatgacaa aagcaagcaa aatcggaagt agggaaaaca gaagaagtaa
     7201 aaacagtgct ggcgatataa acaaataggg tgtattttta tttaaaaatt gtttcataac
     7261 atccagtcca ttctaaaagg gcaaatggca gaataaatca tttgcccttt ttatttgtta
     7321 ttttttaaga agtgcttcta cttgatcgtt gaaagtatcc atttgtgttt gtacatctgc
     7381 accaccacga taaatttgtt cccaagattt tccatataat tgagcgattt cctcaaattg
     7441 tgggataagt ggcattggtt cagctgtttt catttgttcg ccgaatactt tgtagtaagg
     7501 gtcatttttc agcatatcat cttcccaagc atccatacga gctggcatgg agtttgtatc
     7561 ttttaaccaa gataattgca catcaggttg actcatgtag tccatgaatt ttagagcatc
     7621 atctttctta tcactatatt tgaaaatgga aaggttagcg ccaccaaggc ttgattcgtt
     7681 attttctttt ttaggtaata ctgcagtagc ccattttccg tcaatgtcag gggcagtgtc
     7741 tttcagtgta ttaaccatcc aaggaccact catgaacatt ggcacaatac cgtcgccgcc
     7801 gaagctttga gaagcatcta aaccaagatc agtatctgga gcggaaccat ttttaatgaa
     7861 actatctaaa taactaacag tgtctacgaa aggtttttta ttgaatactg gttgaccatc
     7921 tttatcgaaa agaggggagc cgttttgacg tccgaaaatg aaaccagtcg tttgttcgtt
     7981 tggatcaatg gcaaagccgt acatatcttt gccacgttta gaaagtttaa gtgcagcgtc
     8041 ggatagttca tcccatgttt ttggagcttc attataacca acttttttca gtaaatcggt
     8101 acggtagaat aatacgcgag tttctgcata ccacggaaca ccgtaagttt tcccgtcaaa
     8161 ttgagtagtt tttactgaac ctgggaaaaa tagatcagaa ttcatatttt tgcttttttc
     8221 gacatctttt gtaatatcaa gtagtgcgcc agcttcgaca aattcaggca tccaagtagt
     8281 tcccatttgg actacatcgg ggccagattt agaagcaacg gctgtaagta atttatcatg
     8341 tgcatttgcc caaggaataa cttgaacttt aacttcaatg ccagtatctt tcgtgaattt
     8401 ttgtgcgagt tcttttagtg acttggcttc atcacccatt gcccaaacat ttaatacttt
     8461 agaatcgccg gaatttgcat catcctttga cccaccacac gccattaata ctaaactaag
     8521 cgacaacact aaagctaaaa cgacaaacat ctttttcttc atgatttttc ctccattttt
     8581 tgtttttttc aaagcaactt gattaactaa aagctgttaa agaataaaaa ctgttgcacg
     8641 gaactagtgc gccgtacggg atgaagcaaa ttgtgaaaat taattcacat acacaatatt
     8701 tcatagaaac gtttcgacaa ggttattata gtatattatg taatcggttt caagtgaatt
     8761 gctattttat ttttacttta tagcgtctga acattgtata tcaatggttt tgcggatata
     8821 aattttttct ggataaactt ttacgaaaac gagatagtat agaagaaaaa gaaaaaaagg
     8881 agcgtttcac catgtgaatg tcgtttttgg ttgactaaag aaaagaaagc gcttatactg
     8941 ttgttatatt tgaatagaaa cgtttcgaaa aaagtgttca ggaggttcct atgaaacaag
     9001 aaaaagtaca ggatttagtc aatcaaatga cgttagatga aaaaatcgct caatgtcttc
     9061 aactttcccc ttttcttttt aaaggtacaa acaaaaatgc agaactaaca gggccgcttc
     9121 ttcaagaaat gaaattgacg gatgcgcata cggaaaatgc gggttcggtg cttggatcaa
     9181 gctcggcgct tgatatgatt ggtattcagg aagcttattt aaaaacgaat cgattaggaa
     9241 ttccgcttgt ttttatggcg gatgtcatac acgggtataa aacggtattt cctattccgc
     9301 ttgcacttgg ttgttctttt gaccgggaga ctgttcgagt gatggcagaa gtttcggcgc
     9361 tcgaagcaac ggcagatggg catcatgtca ctttttcacc aatgcttgat ttagtacggg
     9421 accctcggtg gggacgtgtg atggaatcaa ctggtgagga tccattttta aatagtgaac
     9481 ttggaaaggc aatggtagat ggttaccaag gcgatgcgag taaactacat gaaaacttgg
     9541 agcaaatggc ggcatgtgtc aaacattttg cggcatacgg ggctgcggag gctgggctgg
     9601 aatacaacac agttaatatg tctacgcgcg aactttatca aaattattta ccagcttata
     9661 atgccgcaat acaagctgga gctaaattag tcatgactgc ttttaacgtg gtagacggga
     9721 ttccggcaac aatgaacaaa tggcttaacc gagatgttct acgagacgaa atgggttttg
     9781 acggtgtact tatttctgac tggggcgctg ttgccgaagt aattaatcac ggaacagcca
     9841 gaaatcctaa agaagccgca cagttttcga tggaagcagg cgttgattta gaaatgatga
     9901 cgacttgtta tatccatgaa ttaaaaggtt taattgaaga aggcaaatta tccgaaagcc
     9961 ttttagatga agcagtactt cggatgttaa ctttaaaaaa tgatttaggg ctatttgaag
    10021 atccctatcg cggattaaaa aataacgacc gcacaaaaga tattttaacc gatgatagcc
    10081 gcgggaaagc tcgggcagca ggtattgaat ctgctgtgtt attagaaaat aaaaaccgat
    10141 tacttccact ggctaaagaa gcaaaaattg ccttggttgg tccacttgca acgtcgcctg
    10201 atattctcgg tggttggaat gtatacggtg aagaaaaaga tggcatcaat gttgaaacag
    10261 gtttgcgtga agtatttgaa acggtcgaag tcgtttcaac ggagtacact gaattgtcgg
    10321 aagaagacaa agtggcagtg aaagcggcag tagagaacat ggatgttgtc gtgcttgccc
    10381 taggtgaaaa aaatgaatgg ggcggggaag caggaagtct tgctactata cgcttgccgg
    10441 aagcacaata tgaattagcg aaattcgtcc aaacattagg aaaaccagtt gttattacat
    10501 tatttaatgg tagaccgctc gaagtgaaag agttagcaga atctagtgat gctcttcttg
    10561 aattatggtt cccagggaca gaagcaggcc gtgtcactgc agatttatta agtggtgcaa
    10621 gtaatccttc ggggaaatta tccatgtcat tcccgcaaac aactggtcaa attccggttt
    10681 attataatca tttacgcact ggacgaccac aaacaccgga aaataaaggc gaacgctatg
    10741 tgtcgcatta tcttgatatt ccaaatgaac cattttatcc atttggttac ggaaaaagct
    10801 atagcaaatt cgagttaaaa acaagcagtc ttccgaaaga actaaatcta ggtgaatcac
    10861 tacatgtgga agtaaccatt aaaaacatta gtgatattgc tggaaaagaa gtaatccaag
    10921 tttatttaca agatgtgaca gcgagcattt cacgaccagt caaagaatta aaagcttttg
    10981 aaaaagtagc gcttcaagct ggcgaagaaa aaacagttag atttgaatta acaagcgagg
    11041 cattttcatt ctataaccag cagcttgaaa aagtgcagga accgggactt caccgagttt
    11101 ttgttgggac tagtagtgaa gatgtagacg tttttgaagt ggaagtgggt ggatatgtgt
    11161 gacaatgtta aaagaaatta aaaaagcgga tttatcagcc gcattttatc cgagcggaga
    11221 gcttgcttgg ttaaaatgga aagatattat gttaaatcaa gtgattcaaa atccattaga
    11281 aaaccgcttg tcgcaaatat atgtacgcgc gcatttagga gataaaatag aaatttatcc
    11341 actacttagc agagatgcgg aagttggttt taacgaaaat ggcgtggagt atcgcggtgt
    11401 agttggaccg tttcgttata gtgtgcaaat gcattttcat acgcgcggtt ggttttatga
    11461 tgtctcagtg gatggggatc ttgagtttga ttttgtttac ttacaagact tggggcttgc
    11521 agaacaagca gcagtgagaa caaatgaagc ttatatgtcg caatatattg attatcatgt
    11581 gacagaaggc gcgactggtt tcacggttca agcccgccaa aatcaaccac aaagtgagcg
    11641 tttcccagca gttcaaattg gagcattaac gaaaattgtt gggtatgcaa cagatggttt
    11701 tgatatttat ggaacaaatt ataaactgac tagcgaacta gcgaacctta aggaaaaatc
    11761 attgccaaac cgagtctacc aatatgaatt cgctcaaata tccttacaaa cagagctatt
    11821 tactaatcac ggtgaaacaa gcttttacgg gtatgcaaca gaaaatcaac caaaagcatc
    11881 tggagcacca atcgaaaact tagcagaact aaaaagtaat atttcagggc aatcttacca
    11941 aacaagtact aaagctacac taaacaaaca cataggaaca ccgattatcg gtgaaacaat
    12001 ttctgacaac tggcttcaag agaacttccc agaccgaatt caagaagagc aacaaaacgg
    12061 cgatctactt tcctttttca caccaaatta tgcccatgtt gtgatgcgtg aaaaagaagc
    12121 agaattagaa cgcccgcatg gcagtatttt gcttgataaa gtggatgttt taaatccaga
    12181 agcgacactt tcggcaacaa cgtacatgta tggggcattt ttatcacaat tagttgctgg
    12241 aaatacgaat atgaacaaat ggaatagcca tgcgcgtaat ccgcttaata ttcttcaaac
    12301 aagtggatta agaatttata tcgaattaga ttccgaactt cgactactcg gtgtgccgtc
    12361 tgtctgggaa actagtacaa attactcgac ttggtattat cagtggaatg acgacctaat
    12421 tacggtaaaa accacattaa cagctgaaag taaagaggca ttcgtcactg ttcattcgga
    12481 aaaaggtcgc tcatataaat tagtcttaac aaatcaagta actatgggga caaatgaata
    12541 cgatactacc gtgaaaaaag aagttaaaga aggaatcgtc acttatttcc ctgcagaaga
    12601 ctcgccgatt ttagaaacct atccggcgct tcaattccgc gtagatggaa cttataacga
    12661 actgactgac gaacgttatt ttgcaaaaga atatgtggga acagcaggtt tggatgtgtt
    12721 tgtttttgaa ccaagtgata aagcgacttt ccacgttcaa gcaaaactca ctgatgaatt
    12781 ttctgaacca acggaggatt tagaagcaaa taacaaagta attcgcgcta gctatgacga
    12841 attaactgcg cagttccatt taaatcatca aagtacaaca gcggagaaac tgaacttaac
    12901 ggtttattgg tacgcgcacc aaatgttagt tcactatgct tcaccacatg ggttagaaca
    12961 gtacagcggg gcggcctggg gtacgcgtga tgtgagccaa ggtccatttg aatttttcct
    13021 tgcaacaggc aataaagctg ttttacgtaa gctagtgttg acgatttttt ctcatcaata
    13081 tcaagatact ggggattggc cacaatggtt tatgtttgat aaatatacat cgattcagca
    13141 agaagaaagc catggcgatg ttattgtttg gcctctgaaa attattggtg attacatgga
    13201 aatgagcggg gatacaggga ttttagaaga agctattcct tttgttgatc gcgaatcgaa
    13261 aacctttacg aaagagcaag gaactcttct tgaacacatc gaacttgcag tagaaacgat
    13321 tgaagcccgc tttatgaaag gaacggctct ttctaattac ggcgatggtg actgggatga
    13381 cacacttcaa ccagctaatg cccagctgaa gaaaaacatg gtgtccagct ggacggtcgc
    13441 gctaacatat caaacattta aacgtttagc tgcatttttg ccagtaggtg agaaatacga
    13501 aacattagca aacaatgttc aagcggactt tgcgaaatat atgacaaatg atactgatgt
    13561 tattccaggt ttcctatatt tagaagaagg aaaagcacct gtatggatga ttcacccaga
    13621 agacaaagat acgaatatta aatatcgctt aataccactg acgagaagtg taatttctga
    13681 attagtcgat aaaaagcaag ccagtcgcaa ttttgaaatt attggtgagc atctacttca
    13741 tcctgatggc gtaagattaa tgagtgagcc agcgcattat gctggtggtg taagtactca
    13801 ttttaaacgg gcagagcaag cagccaattt tggtcgagaa gtcggtttgc aatatgtgca
    13861 cgcgcatatt cgttatattg aagctttagc aaaaattggc gataaatccg cttggcatat
    13921 gctggatgtt attaatccaa tcaacataaa agaagttgtc ccaaatgcgg cacttcgtca
    13981 aagtaatact tatttcagta gttctgatgc agcgttttta gatcgctatc aggcgcaaaa
    14041 tgagtttagt cgtgtaaaag aaggtagtat tcctgtgaaa ggcggctggc ggatttattc
    14101 tagtggccca ggaatctatt tacatcaatt aataagttct gttcttggta ttcgccaaac
    14161 ggaagatgcg cttatttttg atccaatttt acctgaagaa ttagatggat tagaatgtca
    14221 tattgaacta gataattatc cgcttgatct tactttcgaa agtgcggatg agggttctat
    14281 tgtcgtgaat ggtgaaaaac aaccagttga aaatgaagcg aatttgtacc gaactggcgc
    14341 actcgtttta ccgaaaaaga atttaacgac aaaatgttca caaatcacga ttaaattttc
    14401 aaaaaataac cgtctctaag gttgttttgt gtataataaa agaaaacaga aaaggatgcg
    14461 attcacgtgg taggaattaa agatatcgcg aaaaaggcag gggtttccat ttcaacagta
    14521 tcctacgcgc ttaatggcag cccgaaagtg accgaaaaaa cgcgaaaacg aattatgacc
    14581 atcgcaaatg aattgaatta tattcccaat atggcagcac gaacgttaaa aacaagagaa
    14641 acaaaaatta tcggcgtcta tttaacgaat tacggcggga ttttttacgg gactttactg
    14701 gaaggtttaa cgcaaacgct atataaacat ggatatgaac tcatcgcttg cagtggcacg
    14761 aaaacacacc gatttttacc cgagaaaatg attgatggcg ctattatttt agatgcgaat
    14821 ttcccgtcta gcgaaatcat taattatgct aatcgtggtc ataaattagt ggtgcttgac
    14881 cgcgaactca cccatgagaa cgtgagccaa gtccttctag ataataaagg cggcgcaacg
    14941 ctagcaattg attatttatc tactaatttt aaaggtgatt tctatgtcat taccggtcca
    15001 gaagattctt atgatgcaag agtcaggctc gaaaccgcga aacaagaact cgctcggtca
    15061 ggtgacaaaa aggtgcatat tattgaagga gacttttccg aagaaagtgg cgaaaaagca
    15121 gcagccatta tcacggaaaa ctggaaggcg cctgtttctg tatttgccct aaatgataac
    15181 atggctattg ggatgtatcg ttattttgca gggacagatt tggaaatcgg caaagacgta
    15241 cgaattattg gctttgataa tacggatata agtgagtatt tggttccacg tcttgctact
    15301 atcgaatact cgaagtacaa atggggcgca gttgccgcag ataaactagt ggaactcctt
    15361 gaaggtggaa aagctgaaaa cgaaataatc tatactacta gaatcagtgg gccatctgtt
    15421 tcaaacaatt agtacgcttt tttccttatt ttaaggtata cttaagataa aatgaaggga
    15481 gctgttggct aatgaaactt ggaattatgg gaacgaactg gattacggat tcttttattg
    15541 aaggtgctat taattcaggt gaatggaatc ttactgcggt atattcgcgc acagaagaaa
    15601 aagcacgcgc atttggagaa aaatatgggg acttgactta tttcacggat atagaagaaa
    15661 tgggcaaatc agatgcactt gatgcggtct acattgcttc tcctaatgcg ctccattatc
    15721 aacatgcggt tagcttactg aaaaataaaa aacatgttat cgtagaaaaa ccgatttttt
    15781 ctaccgtagc cgaattagag catgcgcatc aaattgctcg cgaaaacaat gtctttttat
    15841 ttgaagcagc gcgccacatt caagagccaa acttcaaacg cctacaagaa aacatcgaaa
    15901 aagtaggtac tattcacggt gcaacactag cgtatatgaa gtattcttcc agatacgatc
    15961 aagttttaaa cggtgaagaa ccaaacatct tctccttgaa attttctggc ggatccatcg
    16021 ttgacttagg tgtctatcca ttatattcag cgattacact attcggtgaa cccataaaag
    16081 caacttattt tgccactaaa ttaccaactg gtgtagacgg acttggacca ataattctcg
    16141 aatacccaac attcaatatt actatcattc aagggaaaaa ctcacagtcc ttcctgccaa
    16201 gcgaaattta tggtcaaaaa ggaacactaa ttgtcgatcc acttactgga attgaaaaga
    16261 ttacttttta cgacaacgca acaaaagaag aaacagagct tgctggtcca gttgtagcca
    16321 atgatatgca atttgaagca gcagagtttg ctagaattat cgaacaaagc gaccgagata
    16381 catatgaata cttagcagac ctaagcttga aagtattacg tgtctccaac gaacttcgtc
    16441 accaaaatga catttggttt gacgcagaaa aataattttg aagagctagg aaaaggctac
    16501 catgctgatt cctagttttt ttgtgcttga caataaatga aatccaagtg tactatttac
    16561 ttaatacact agtttcgttt aaaaaggagg taataatgaa tccgaccttt catgcagata
    16621 aaccaatcta tagtcaaatc tctgactgga tgaaaaaaca aatgattaca ggtgaatgga
    16681 aaggggagga taagttgcct tctgttcggg aaatgggcgt aaagcttgca gtaaatccta
    16741 ataccgttag ccgtgcttat caagaattag aacgagcggg ttatatttat gcaaaacgag
    16801 ggatgggatc attcgtcact tccgacaaag cacttttcga ccaattaaaa aaagagttag
    16861 ctgatgaaat ttcagaacgc tttttggaag aagcgaggag catcggttta gatgaccaag
    16921 cagcaattga attactaata aaaaggagcc gcaactatga atgaaaacct gattacaatt
    16981 acgggattaa cgaaaaaata tcgaaaaaga aaaccgttaa atgatattaa cttatctctt
    17041 caaaaaggca agatcatcgg gcttcttggt cctaatggcg cgggaaaaac aactttgtta
    17101 aatgcaattt caggtctact taaaccaaca tctgggacaa taaacctagc tgagcacagc
    17161 agaatagcct atttaccgag tgaagatatt ttacctaata tggttatccg cgactatttt
    17221 caaatttatc gtagcttttt tccggatttt gaccatgaaa aagcaaaaca aatgatccat
    17281 acatttggaa tcaacgtaaa agaaaacacc aaatatttat ccaagggcaa tgctgcaaaa
    17341 gtaatgttgg cccttatttt atgccgagat gtagaccttt atttgctgga tgaaccattt
    17401 tcagaaattg atttgatttc acgtgatgac ctaattaaaa gcatcgcgac ttttcttaaa
    17461 gaagatgcaa cacttgttgt cacaacgcac ttaattcaag atatggaaat gatgtttgat
    17521 gaaattatct ttttgaaacg gggtaaaata atcgaacaaa tagacacaga aacacttcgg
    17581 gaagaatatg ggaaatcagt ggtggattac tatcgggagg tatttgggca tgcttaaagc
    17641 acactggaaa ttagaatgga acgcacatcg ttacatattt tttgctactt ttgttggttg
    17701 gctgatttgt ttactaattg gacttttttc taaattagga aatggcttat tagagccgct
    17761 tgtgatggag tcagacatag acggagttgt attcgggtct ggcgatggtg ttttcatagc
    17821 tttaataggc ttcgttggtg ccagttggtt acttatttgg ttgcttttat ttatggcagc
    17881 agctcgatct ggaatttacg acgaaaaccg ctatttgttt tttcaaacag aaacacctat
    17941 ttggaaaata ctattgaata aattaatcat cgtcttaatc gaaacggcta ttctaacggc
    18001 gggggttatt gtgattataa ttagcttggc gataataggt ggcgcggaga tttctttttc
    18061 agtaggacta actatcattt ttgacacttt tttagcgata ggacttaata ctttttcttt
    18121 cgtctgtatc ctttttctag caacagcttt gagtatggtg ccagtcaatg gtttccgtgt
    18181 tggttttatt ggcgcattaa tctactttgt actaattaat gcaattcaag tatccatcgg
    18241 aacaaatttt ttatctaaaa gtagctcaga aatccatttt tattattccc ttttttcaag
    18301 tgttcatttt aattttatcc agatgggttt taatcttttg atggctcttg tttacttttt
    18361 tctagcaaca aaaattctaa ataaaagtgc agacttgcag taagcatggt atgatacaga
    18421 gaagaactaa taaaggagtc gggtcatgac agaatcaaat atcccaagct tttgggcgga
    18481 aaaatggcaa gaacatggtt atgaaacgcc aacagaaatt caaagcgcaa tgtaccaacc
    18541 aatcaaagac ggtgcagatg tacttgcagt atcaccaact ggaacgggga aaacggtggc
    18601 ttatgcactg ccaacccttg aaaaaataga ggcaattcca aaaacacaat ggcttgtttt
    18661 agcgccatca catgaattag ttatgcaaat cacggaagta attcgttcgt ggttgccaag
    18721 tgatgaactc acagtaatct ctttaatcgg aggagccaat gtcaaacgcc aaatcgaaaa
    18781 attaaagaaa aaaccacaaa ttatcgtagc ctctccaggg cgtgcacttg aactaatcaa
    18841 acaaaagaaa attaaaatgc atgaaattaa aacgattacg ttggacgaat gcgaccaatt
    18901 acttcgccaa gaaaatttta aaagcacact tgagattgtt gaaagtgctg ttcgcgatcg
    18961 ccaattgaca cttgtatctg cgacaaaatt agaaaatccg gacatgtttt ttgcacaaac
    19021 agaaaacaca ccagtaatgc tagaggtaac agcaaaacca gaagaattaa cgaatgtgga
    19081 acacctatac atggatgtgg aatcacgtga taaagctact ttactgcgcc gtatttcgca
    19141 tattaaagac atgcgcggct tagttttcgt aaaagacaaa ccacgaatgg aaattttgct
    19201 agaaaaactt cattacgata aagtaaaagc agctggaatt cacggcgaaa ttcgcaaaga
    19261 aaaacgcaaa aaatatctgg acgactttaa aaaaggcacg ttgacttatt taatcgtgac
    19321 agatgtagcg gctcgtgggc tagacataga agatttacct tacgtgattc actatgactt
    19381 agcagcaagt gaaaaagagt acacgcaccg ttctggacgg actggacgaa tgggtaaatc
    19441 aggtacggtt attactttcg ctaacccacg tgaaataaga acattaaaac aatatttaac
    19501 tatccacaac ttaaaaggga agcaggttcg cttttatcaa gggaagcttc ttgacggcgc
    19561 tgttccagaa aacaaaattg ccaaaaaagc atctagacca ccaaaaaaag ttcaaaaagg
    19621 taaaaaagat gacgtgaaga aaccattccg taaagacaaa ccaacggaaa ctgctggaaa
    19681 acgtaaagat aaaccaacta acgcgtctaa accgacacgt aataataaac caaataaatt
    19741 taacaaaaaa ccaactaatt tcaaaagatc ttaagatgcg ttgaatgttt ttctctcttg
    19801 atagatagga aagcattcgc gcttttttta gttaattttt atcgttgcga ggatgctgtt
    19861 taaaaaggta taatggaaac atagagtttc aaaaaggagt agagtagatg tctagtagaa
    19921 aagaagaagt cctccaactt ctaaacgaaa aagaagaaaa agtatctgct gcagatgtcg
    19981 cagaattgct tcaaatggac agagcaaacg ctagtcgtta tctaaatgat ctttttaaag
    20041 agaaaagaat agacaaactt cctgggaaac cggtatttta tcaagccatt aaaaaagcgg
    20101 aaagagctag ccaacatgcg ggaaatatac aagagtctgc ttttggaaga ttgataggtt
    20161 cagaagatag tttaaaagta agtattcaac aagccaaagc cgccattcta tacccgccaa
    20221 acgggctgca cagcttaatt ctaggacgga cgggtacagg gaaatcactc tttgctgaat
    20281 gtatgtatca atttgcgaaa gaatcggaaa ctatcccggc cgatgcgccg tttgtttcgt
    20341 ttaactgtgc cgactatgca caaaatccac aacttttatt tggtcacatt tttggggtaa
    20401 ttaaaggagc atatacaggg gcagaagaaa cgcgcgaagg tttgctaaaa aaagcagatg
    20461 gcgggatttt attccttgat gaaatccacc gcttgcctcc agaaggtcaa gaaatgctct
    20521 ttacttttat tgataaaggg gaatttcgtc cactaggtga aagcgcgaat gtccaccatg
    20581 cacaagtcca aattattgga gcgacaacag aatcaccaga taatttttta ttagaaacat
    20641 tcacaagacg tattccgatg acaattacct taccatccct tgcagaaaga aatctggaag
    20701 agcgttatca attagtggag tttttcttga accaagaagc tacaagactt caccaatcca
    20761 tacgtgtaca cagaaaagcg ctgattgctt ttttacttta tcatgcaagt gctaacgtcg
    20821 gtcaattgca aagagactta aaactagcct gtgccaaagc atttttacat tataaaacca
    20881 aaacggctaa ttatatatta atcgaacaag atgacttgcc tatccacgtt caaaaaggtt
    20941 tactccactt aaaagacgaa ccagaaaaat taaatcgttt gattgacgtg aacaaagcca
    21001 tttttaaatt tgttgatacg agtgatgaat ttgttgaaac agaagatgtt catgatgttt
    21061 accatgccat ccaagaaaaa gcagatcaat taatgaaaga agggaaggac caaagcgagt
    21121 tagaagaagc actttatgtt gatgtagatc aatatttcca caactacatg gtccagttac
    21181 caacccacca aactgccaaa gaaattattg cgcctgctgt ttgggaatta acagaaaaag
    21241 tatatgccat ggcagaagaa aaactaaatc gcaaatacaa cgaaaaaatg aaatttgctt
    21301 tttctttaca tttacaaagt accatcgaac gagtacggga acaaaagcat atcattcatc
    21361 ctgatttaaa taatattcgc aaaaaatatc caaaagagtt ccaagtagct attgatttat
    21421 ccgcactgat tgaacaagaa ttaagcattg aaattccttt tgacgaaatt gggtttttaa
    21481 cgatgttcct gacagaggaa gtagtagata cgtcactttc tcaagaaaat caagtcgaag
    21541 ttattgtgat gatgcatggc cgttcaactg ctacgagtat ggtggagacg gtacaggaat
    21601 tactgagcat tgaaagcggg attgctcttg atatgccgct cactgttgaa gtaaaagcga
    21661 tgtatgaaaa attaaaacaa acggtcatta agttaaatcc tgtcaaaggc gttctaatcc
    21721 tttctgatat gggttccctc acttctttcg gcaacatgct gaccgaagaa ctgggaatcc
    21781 gtacaaaaac cgttacgatg gtaagtacac cagttgtact ggaagcgatg cggaaagctt
    21841 cacttggtcg tggtttagaa gatatttatc aaagctgtga gcaattattt gaaaataaat
    21901 ataaagcaca tgtcttacgc gctaaacctg tgaaaaatgc ggttatcttc acttgtttta
    21961 ctggagaagg agtagccgaa cagttgcgta aagtcgtagc accaattatt gatgaaacaa
    22021 aaattgaaat tattgtatta caattcttgc ataaagaagc ttttcgggag cgaatcgatc
    22081 aactcatgga agaatataat attctagcca tcatgggatc agtagccttt gaatatcgcg
    22141 atatcccatt ctttagcgca ctggaagttc tatcagaagg tgggttaggg attgtttcta
    22201 gaatattaaa tgatgaagta ccttacgaaa aattaatcgc ttcattagaa ggaaatttac
    22261 aagcagtaag ctctgctgaa caactggttt actttttacg aaaagtaatt tcagaattgc
    22321 aattgcaact taatgttata cttgagtcag gtgtggacat tggtatgatt ctacacttag
    22381 ctttcctcat cgaacgcgtg aaattaggcg ctgtcgaccg ggaattccca gatttaaatg
    22441 aatttgccaa aaatcatatg gtggaaatgc aaattacaca acaaatgatg gaaaacgtag
    22501 aaattgagta tgatatcgta ataccgcaat cagaaatcgc atatttaaca cagatgatgc
    22561 tctcaaacca ggtggaagaa aattaagaaa aaggaatctg ccaagtgtgt attgtcttac
    22621 acacttggct tttttacttg tgtaagcgaa aaactttgta ggcaagcaac aaattagaag
    22681 aaaagttggc acatatcttg catattatat atacgtgcag cttttcaaac taggaggtta
    22741 agttaatgaa taacatcatg ttagtttgtt cggccggtat gtccacaagt ctgctcgtaa
    22801 aaaaaatgac agaagctatc gaaaaacaac aagtggatgc tgctgtaata gcagttgcag
    22861 aagctgattt cgacaagtat aaaggcaacg tagatgttgt tttactcgca ccacaagttc
    22921 ggtttttaga gaagaatttg aagcgagtac tggatccatt aggtattcca gttgcgatca
    22981 ttaatggaat tgactatgga acaatggacg gcgaaaaagt gctaaatgat gcactagcaa
    23041 tgattgagaa ataatctcga gttcgagact gcttgaagag gaattaaaca taagttcgat
    23101 aaatgaaaaa ggatgtgtaa acaatggaat tagaacaaac aattatgcaa ttaatcgtac
    23161 acgggggaaa cgctaaaagt gacgcaatgc tagcaatcga agcggcaaaa aaaggggatt
    23221 ttgacgcggc agatgagcaa atcaaaagtg cagaagcagc actacttgaa gcgcatcatt
    23281 cacaaacttc attaattcaa ggggaagcac gcggcgaaaa agcagaagta tctttactac
    23341 tagttcacgc acaagatcac ttaatgaatg ctattacttt taaagattta gcaaaagaaa
    23401 ttgttgattt ataccgttct aaataagctt ttgaagggat gatttaaatg agaaaattag
    23461 gaatatccgt atttccgcaa cacgtagcgc ttgaagaatc attagaatat attgaaacag
    23521 ctgcaaaata tggttttagc cgtatcttca cttgcttgat ttctgctaat gacgaagcgg
    23581 aatttgctaa attagaaaca atttgcaaac gcgctaaaga actaggattt gatgttattg
    23641 ctgatgttga tccgactgta tttgaatcgc taaatatcac ttataaagaa ttagatcgtt
    23701 tcaaagaact tggactagct ggccttcgtc ttgatctagg cttctccggt tccgaagagg
    23761 cagcaatgtc ctttgatgat acggacttaa aaatcgagct aaacattagt aatggtactc
    23821 gctacgttga aaatatccta tcttaccaag caaacgtagg aaatattatt ggttgtcaca
    23881 acttttatcc aagaaaatac accggtcttt ccagagaaca tttcttacgt acgagtaaac
    23941 aattcaaaga cttaaaccta cgtacagctg ctttcgtttc ttctaacagc ggcgaatttg
    24001 gcccttggtt tgttgtagac ggcggacttc caacaatgga agaacatcgc ggagtggaca
    24061 ttactgtgca agcaaaagac ctttggaaca ctggcctgat tgatgacgtc atcgttggga
    24121 acatgttcgc ttcagaagac gaattacgcg ctttaagcga attaaaccgt aatgaattac
    24181 aattagcagt agagttttta gacggtgcaa cagacgtgga aaaagaaatc gttttaacac
    24241 aaaaacattt caatcgtggc gatgcttccg agtatgtgtt acgttcaaca atgacgcgtg
    24301 ttaatttcaa acaattcgat ttccctgcac atgatacaaa taccatttca aaaggcgatg
    24361 tgactatcga taacgacggc tacgaacgct acaaaggcga aatgcaagta gcacttcaag
    24421 aaatggaaaa ctccggcaac acaaatatcg ttgctcgaat tgttccagaa gaacgttatc
    24481 tactagacac cattctaccg tggcaacatt ttagattggt tgagaagaag aaataataaa
    24541 aattacaagt taaaaaacgt ctgcaatcca tttttcaatg ttgattgcag acgttttatt
    24601 ttgtcgaaaa ttaatatgtt gcttgattta ttctttacat ttcccaatca acccatacaa
    24661 aaacaactgc actatctccg cttgtttctc ctcaagttct tcctctggga ctgtgaaacc
    24721 taaaccatta attgcttcaa taaaaagttg aatagattga tccgaaagac ggttatcaat
    24781 aattttttct tgcttgccga tagcgatgta tttcatataa atctcatttt taagtgcatt
    24841 aatattattc actaacagcg tgataaattg cgcgtctttg cttgcttctt gcgatataaa
    24901 tttacttaaa gacagattta tttctgcatt acagagcttg agagcccgct ctaatttttg
    24961 cgtgaatgtt ccttctgatg ctaaaatttc ttccgctaaa gttatggtat cttgcataat
    25021 aatgctagca cattcaccaa caagcgcttc tttacttcca aaataattat aaatagacac
    25081 ttgcgaaaca tctgcgaggg cggcaatatc tttaatactt acatcagaaa aaccttgttc
    25141 tccaaataat gaaagagctg cctgaataat tgcagtcttc ttttttagcg ttcttttttc
    25201 ataattattc atatcctaaa cacttcccta a
//
LOCUS       DABQVC010000016        24936 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.016,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000016 DABQVC010000000
VERSION     DABQVC010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 24936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24936
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.016"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            225..1085
                     /locus_tag="IBJ56_000450"
     CDS             225..1085
                     /locus_tag="IBJ56_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose transporter GlcU"
                     /protein_id="HAM3416734.1"
                     /translation="MNIMIALIPALLWGTVPLIITKFGGSTRQQTMGMTLGALTFAVI
                     VFFFTDPVYTLKTVGISFITGCLWTVGQMFQLQAFKIIGVSKAMPISTGMQLVGTTLC
                     GVILFHEWDTTLRIILGFIALALIVGGIFLTSYAEKEEDGTNALKQGLITLFISACGY
                     VGLVVLIQGFKIDGINAILPQAIGMVLSALIMTHSGGTEKRFNKRTLLLTIPGIIWAA
                     GNVAMVHANQLVGVATGFSLSQLGVVISTIGGIVLLKEKKTQKEMFFVIVGVVLVVLG
                     GILIGVAKGA"
     gene            1154..3151
                     /gene="metG"
                     /locus_tag="IBJ56_000451"
     CDS             1154..3151
                     /gene="metG"
                     /locus_tag="IBJ56_000451"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HAM3416735.1"
                     /translation="MLPEEKNTFYITTPIYYPSGKAHIGHAYTTVAGDAMARYKRLKG
                     YDVFYLTGTDEHGQKIQAKAKERGISEQEYVDEIAEGFQELWKKLEISNTDFIRTTQD
                     RHKTSVEKIFEQLLEQGDIYLGEYEGWYSVSDEEYFTETQLEEVYKDENGKVIGGKAP
                     SGNEVELVKEESYFFRMSKYADRLVEYYNSHPEFILPESRKNEMINNFIKPGLEDLAV
                     SRTTFDWGIKVPGNPKHVVYVWIDALSNYITALGYNTDNDTKFQKYWPADVQIVGKEI
                     VRFHTIYWPIMLMALDLPLPKMVFGHGWILMKDGKMSKSKGNVVDPYMLIDRYGLDAL
                     RYYLLREVPFGSDGLFTPEDFVDRVNFDLANDLGNLLNRTVAMINKYFDGEIPAYQGN
                     VTEFDQTLVDFKNNVVKEYEGSMDHMQFSVALNQLWSLISRTNKYIDETAPWTLAKDE
                     DKRTELASVMTHLAENLRIIAVLLQPFLTRTPGEIFLQLGLQEENLKKWDSIYGYGEI
                     PAGTTVVKKGTPIFPRLEAEVEVTFIQDEMKGSAPAPAKEAAEVEALETPQIGIEDFD
                     KIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVS
                     NLKPVKLRGLMSEGMILSGEKDGKLSVIEASSALPNGAKVK"
     gene            3316..4530
                     /locus_tag="IBJ56_000452"
     CDS             3316..4530
                     /locus_tag="IBJ56_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HAM3416736.1"
                     /translation="MDILRKRNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMS
                     TLTYILDDLQQEGIILEGAETSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDL
                     NAEIMENTSIPFSSEKKPEEAIELIAKNVKKMCENRDMNHLLGVGIAISGLVNRRKGT
                     VIRSTMLGWENVALEAMLHAYFPDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVG
                     AGLGLSVVINRQIYYGAQGGAGEFGHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGE
                     ELKEAYPTSELKDFHFDKVAKSARAGDEMATELMGKMGEYLGYGIRNIINTFNPEKVI
                     IVGEGLHHRDLFLTKIDEIASQNFFSGAGFETEITTTSLEDPAWLQGAALLVIHQLFQ
                     VPIYEEEQTLLR"
     gene            4566..5444
                     /locus_tag="IBJ56_000453"
     CDS             4566..5444
                     /locus_tag="IBJ56_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3416737.1"
                     /translation="MVGMTRKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWD
                     LVSTIHFTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLR
                     PFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAV
                     IITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVT
                     IISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASAMSWILFIVIF
                     IITIIQNKLQKRWSNY"
     gene            5444..6292
                     /locus_tag="IBJ56_000454"
     CDS             5444..6292
                     /locus_tag="IBJ56_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HAM3416738.1"
                     /translation="MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKT
                     GAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVNSVVVAVVTTLGQMLFCSMAAYA
                     FARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGT
                     FLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLW
                     PLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMA
                     MSGMKE"
     gene            6320..7576
                     /locus_tag="IBJ56_000455"
     CDS             6320..7576
                     /locus_tag="IBJ56_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HAM3416739.1"
                     /translation="MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADG
                     KALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAE
                     KGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKA
                     GVEYPTADWTWKDEEAAAKKLTDAKNKVWGTSQPVTMNEFYKVAAQNGGSIFNEDLTK
                     TTINSPENVAALTHLTNEVTDSKVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMF
                     QDAPFKWDVQVEAGNTQKATHFFANGIGVSKDSDKKEAAFKFASFMSANEEAAKIRID
                     NNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFEK
                     VLNGDSTPEKALKNSEDNINKTMGFK"
     gene            7659..10961
                     /locus_tag="IBJ56_000456"
     CDS             7659..10961
                     /locus_tag="IBJ56_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HAM3416740.1"
                     /translation="MSKFTKLMQGYLHLIEGKNEKIKPILLETKPNFTTDSVLETASW
                     LWLSSKINHYDREEVEPVIAFLVENWNRPEKSIWGSAENDIYLATISSVYSALLDVKN
                     TFPKPELQQTITIIRDYCFDNLLKGDSILTGFNTRKVSTDQLLSVLPFGLFSPEDLVM
                     VAAVGKMEQQLVQDDGVLPYSGAPRVNSFATALMALYFLEKSDQDKALHYLNMAMKME
                     DNDELGAIFIEINQAFRAMESEVTAHISHDPFGHENRYEQQLTERTPHYPETEMHFSA
                     ACEVISEVEPIQVELVLKEKDWTILCEKKEKNDVQIWEALVPPLEEVGEYTYYFRATM
                     KDQTTLTSDDYTVEPIWKHWSEEAAVCETEQGLMVLFKENPSSIIPVEFTAKSDELVI
                     GLKPSFEASNVKTKSSGQLKKDDLEIIVSNNPVRLEVHFKGKLILESHKIYPALQWYT
                     DKTGAINKVKLHLDAPKEEEYYGFGERYNALGQRGNVLDCFVYNQYRDQGTRTYIPMP
                     FYHTNRDYSVFVDTARYTSFDLGNQLADKHTITVEINGCDTDICLLMGDIRSAVANYM
                     KKTGKPAMVPVWALGPWMSSNNWDRESVVRTEVETTQELQIPSTVVVLEQWSDEATYY
                     MFNDAEYDEKAPFEAYNYDEIRFPSWGRWPDPKGMVDYIHDNKMKLILWQIPIQKYLN
                     RQQHPLKDREEAYMIEKGYVVKNPDGSPYRIPENWFTESLIMDFSNEEGKKWWFDKRQ
                     YLIDIGVDGFKTDGGEFVFGEGLQFADGRRGDEMRNLYPNDYVEAYYQFAQQNDGMTF
                     SRAGYTGAQNFPAHWAGDERSTFDAFRRSLIAGLSAGFSGIPFWSFDFAGFNGDIPTA
                     ELFIRSAEMATFCPIMQYHAESKAEFNQDRTPWNIASRTGDDSVIPIYRHFANVRMNI
                     LPYIYNESLKCVETGLPMMRALLLDYKEDPRVSDMYDQYLFGEAMLIAPVIEDGVRSR
                     EVYLPEGTWYDFWNGTKVNGPTLRKCKADKEEIPVFIRGGKAVLCNVDATLKLGSWVG
                     NTVEEYDTPLLKIYVDGDFTEEMTDHLSEKWLVKVTENADEVVVSVQTNTPAYEVEVI
                     GTTKKVQIKKGR"
     gene            10964..13255
                     /locus_tag="IBJ56_000457"
     CDS             10964..13255
                     /locus_tag="IBJ56_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HAM3416741.1"
                     /translation="MDASTSFAILPSNVKQKTAFERKVNQVKTASWANNCLTGTLDIG
                     QFSCYFVNEKIARVTVNPFGEVDLTPSIAAIHDTEKQAAKFTETTDGYELHFADKEII
                     ICKNPFQIIMKQAGKRIFQTEGLAINRYKEHQISIQSEPGTAIFGLGEKTGALNKAGS
                     IISMWNTDVYSPHNKDTVELYQSIPFMIADTAETTYGLFYDNSHRTEFDFQSFEEMYT
                     ILAEGGQANLYVIFGEDTKEVVANYTDLTGKTPLPPKWSLGYHQSRYSYTSEEEVERI
                     ANTFKEKEIPLDCVFMDIHYMDDFRVFTFNPDTFPNGPELIARLREQNIDVVPIVDPG
                     IKKDVDYSVYQEGIKHNYFCTKLEGSIYYGDVWPGVSAFPDFLSTTVQHWWGGLHKFY
                     TDLGIRGIWNDMNEPSVFNESKTMDLDVVHNLDGKNVTHKEAHNLYGLYMSKATFEGL
                     KRLVPNERPFSLTRAGYAGVQRYSAVWTGDNRSHWEHLEMSLPMIMNLGLSGVAFTGA
                     DVGGFSSDCTKEMLIRWTQAGAFLPYFRNHCVQDSIYQEPWAFGADAEKIVKQYIELR
                     YAFLPYIYTEFQKTAESGLPLVRPLYMEFKDERDLIQVNDQFMLGENILVAPIVREGQ
                     VKRLVRLPRGLWFNYWTKEQFVGGDYIIADAPIDTMPIYIKAGTILPVGSSVQNTKET
                     QDLTLEVYLDGDVASGYVYNDDGKSYHYESGAASKTTLTATFKNGEVLINATHQGEAN
                     LQHKVTTIQVFGEKTDKITRAGI"
     gene            13259..14920
                     /locus_tag="IBJ56_000458"
     CDS             13259..14920
                     /locus_tag="IBJ56_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HAM3416742.1"
                     /translation="MKEKDWWKKSVVYQIYPKSFNDSNGDGVGDIQGIIEKLDYLKEL
                     GVDVIWLSPVYDSPQDDNGYDIRDYQKIYEEYGDMATFDQLLQGLHDREMKLVMDLVV
                     NHTSDEHKWFEESRKSKDNPYRDYYFWREENEINNWGSIFSGPAWELDEKTGEYYLHL
                     FSKKQPDLNWENPKLRQDVYNMMKFWLDKGIDGFRMDVINFISKNTDFPDGPVPDGQI
                     YGDAGNDFCNGPRIHEFLQEMNQEVTSKYDVMTVGEMPGASTTDAQIYTNPANNEVDM
                     IFTFEHMNLDSDGDNKWDLKPIYLPDLKENMSEWQVALQENGWNSLYWNNHDQPRIVS
                     RFGNDNRFRVRSAKMLATCLHMMKGTPYIYQGEEIGMTNVHFETLDDYRDIETLNMYK
                     ERKEQGHSHESIMQSIYTKGRDNARTPYQWDNSENAGFTTGTPWLKVNPRYTEINNEE
                     ALKNPDSIFYYYQNLIKLRKTTEIITTGNYRLLLPKDEAIFAYERYTENEKLVVLCNF
                     TEEEQVISDENILNEIQKGSVLVNNVPNIIEGTLRPYEAIVYQIK"
     gene            14993..15790
                     /locus_tag="IBJ56_000459"
     CDS             14993..15790
                     /locus_tag="IBJ56_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HAM3416743.1"
                     /translation="MILLGGILLLFDTHVHLNDEAFDDDIEEVIKRAQENDVTRMAVV
                     GFNKETIDRALELAEKYDFISLIVGWHPTDAITFTDEDLEWLRDLALTHPKVVALGEM
                     GLDYHWDTSPKETQFEVFRKQIRLAKEVNLPIVIHNREATEDVVRILQEEHAEEVGGI
                     MHCFGETVEVMEACLAMNFYISFGGTVTFKNAKLPKIAAQAIPIDRLLIETDAPYLAP
                     TPNRGKRNEPGYVKLVAEKIAELKEMKYSEIATHSTENAKKLFKIKD"
     gene            16082..17302
                     /locus_tag="IBJ56_000460"
     CDS             16082..17302
                     /locus_tag="IBJ56_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF348 domain-containing protein"
                     /protein_id="HAM3416744.1"
                     /translation="MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDIT
                     IVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITI
                     NDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQ
                     NGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKK
                     NEQVKFETVYKEDDSLNKGVEKVVQEGKNGEKVVEYKVTFENGKEKKRDVIKENVTSK
                     KTDKVVVRGTKEKVVATPVSNVSTPSTTSSSSSSSTPSGGKTYRMESTAYSGGGTTAY
                     GINLSANPGLKVIAVDPRIIPLGSKVWVEGYGEAIAGDTGGAIKGNIVDVYFPNESQC
                     YSWGRRMVTVKVLN"
     gene            17404..17979
                     /gene="rnmV"
                     /locus_tag="IBJ56_000461"
     CDS             17404..17979
                     /gene="rnmV"
                     /locus_tag="IBJ56_000461"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HAM3416745.1"
                     /translation="MNGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIE
                     KIRHAQELRGVIIFTDPDFPGEKIRKQIDSAVPGCKHAFINRQDALPKAGRGLGVEHA
                     SSANIREALENFHTSGTPAEKQFISKDILIHLGLLGGAGAKERREKIGNILKIGYTNG
                     KQLQTRLESFAISEDQLVAACQKIMQEEENE"
     gene            17972..18859
                     /gene="rsmA"
                     /locus_tag="IBJ56_000462"
     CDS             17972..18859
                     /gene="rsmA"
                     /locus_tag="IBJ56_000462"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HAM3416746.1"
                     /translation="MSKDIATPGRTTEILKKYGFLFKKSLGQNFLIDSNILTRITDTA
                     EITKETNVIEIGPGIGALTEQLAKTANEVVAFEIDQRLLPILDDTLSAYNNIQVVHGD
                     VLKADVEEVIAEQFAKPDLPLKIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVA
                     DRISAVPSTKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAE
                     VNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETL
                     DIPEFAKLSNFLGDFLKEK"
     gene            18979..19236
                     /locus_tag="IBJ56_000463"
     CDS             18979..19236
                     /locus_tag="IBJ56_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416747.1"
                     /translation="MPKTIASIKTNLDSRLGKALTLKANGGRKKTIERCGILAETYPS
                     VFIVELDQDENNFERVSYSYTDILTDAVELVFTDDNKELAL"
     gene            19375..20256
                     /locus_tag="IBJ56_000464"
     CDS             19375..20256
                     /locus_tag="IBJ56_000464"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HAM3416748.1"
                     /translation="MKISITAPAKINLSLDALYKREDGYHEVEMVMTTIDLADRLYLE
                     RLDEDKIVLDVKAHFIPEDRRNLIYQAALLLKKRFDVKMGVRITIDKHIPVSAGLAGG
                     SSDAAAALKGLNVIWELGLSIEELAEISSEIGSDIAFCVYGGTALATGRGEKISALPN
                     IPGCWIVLAKPSISVSTPTIYKELQVDNVEHPDTQKMIESIKNGDLDGIFASTGNVLE
                     SVTLEKNPQVKRIKDRMLAFGAEAALMSGSGPTVFALIKQYSRAKRVYNGLRGFCEEV
                     YMVRPWSEGENDTNINN"
     gene            20278..21015
                     /gene="chbG"
                     /locus_tag="IBJ56_000465"
     CDS             20278..21015
                     /gene="chbG"
                     /locus_tag="IBJ56_000465"
                     /EC_number="3.5.1.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitin disaccharide deacetylase"
                     /protein_id="HAM3416749.1"
                     /translation="MKIIFNADDFGISPGAVYGILESYKRGVVKSTTLLANSPAFDLA
                     VEVAKENPGLDIGAHLTLTFGSPVLQGLETLTDDDGRFRRNYTSLENGLADVDMNEVE
                     RELTAQIEKILDAGITISHFDTHHSIEPLIYPVQHKLAEKYGVSIRRHSDVSDFGAIK
                     TPDLFATEFYADGVSFETIKKLVQKHIGTNDVVEVMTHPAFIDETLREISSYVEPRIK
                     EVSILTSRELQAYLGQQEVEIISFRDL"
     gene            21179..21997
                     /gene="purR"
                     /locus_tag="IBJ56_000466"
     CDS             21179..21997
                     /gene="purR"
                     /locus_tag="IBJ56_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HAM3416750.1"
                     /translation="MKIRRSERLIDMTQFLLSHPRKLVPLTMFAERYGSAKSSISEDL
                     VIIKKTFEDRGIGTLETVPGAAGGVQYISIAGNDDVLDFVHTLCNRIAEPNRLLPGGY
                     LYLSDLLGEPVTLKAIGKILATKFNNQKIDAIMTVATKGIPIAQAVAEHLSVPFVIVR
                     RDSKVTEGSTVSINYVSGSSKRIEKMELSKRSLAEGSNVVIVDDFMKAGGTINGMKNL
                     LEEFNAHLVGIGVLVESEYAEERLVDDYVSLVKIKNVNMKEKQIEVVDGNYFNS"
     gene            22174..22851
                     /locus_tag="IBJ56_000467"
     CDS             22174..22851
                     /locus_tag="IBJ56_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HAM3416751.1"
                     /translation="MKKWVKWLIVIVIIAVVAVGAVFLLSKNSGSVTQGKLVTAKVKQ
                     GDMKINATGTGAISPVNTQVPDYDELQLVAQMDELDIPNIKKDQEVKVTVTALPDKTY
                     TGKVKEIAEQGQVQNGVSSFSVIISLDKTDDLKAGMTADASILVNEKKDALYVPIEAV
                     QKDSDDKYYVLVPEEKDNGKTKKVKKFVETGLHNEDNIEITKGVKKGEKVILPTQETS
                     TVPGAPS"
     gene            22900..23592
                     /locus_tag="IBJ56_000468"
     CDS             22900..23592
                     /locus_tag="IBJ56_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416752.1"
                     /translation="MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPS
                     GSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKL
                     SAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARAL
                     AGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQ
                     DGKLFHEEATQA"
     gene            23589..24797
                     /locus_tag="IBJ56_000469"
     CDS             23589..24797
                     /locus_tag="IBJ56_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HAM3416753.1"
                     /translation="MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNG
                     VTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNAT
                     FDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGD
                     PIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETK
                     SAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTL
                     TTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVI
                     SVCGGIIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASK
                     LRPIDALRSE"
BASE COUNT         8390 a         4295 c         5253 g         6998 t
ORIGIN      
        1 actcgatttt ggggcgttag tttaattcta gtagcattaa tatggtatat tttgtcgaaa
       61 taatgactaa tgagaatcat aaaaaggtaa atcgttaatt taaactttaa cagtcagcgc
      121 tattaagtac ttttactcag aaaacctcta ccatcttctt gttatttcag ctataatgaa
      181 gtaattgaaa actaaattaa aggattaaca aggaggaaaa cgatttgaac attatgattg
      241 cgctgattcc tgcattactc tggggaacag taccgctaat tattacaaaa tttggcggtt
      301 caacaagaca acaaacgatg ggaatgacac taggggcact cacttttgcg gtaatcgttt
      361 tcttctttac tgacccagtt tatacgctta aaacagtagg aattagtttt ataacagggt
      421 gtttatggac tgtgggtcaa atgttccaac tgcaagcatt caaaattatc ggtgtttcaa
      481 aagcaatgcc gatttctaca gggatgcaat tagtcggaac aacactttgt ggggtaatct
      541 tatttcatga atgggatacg acacttcgga ttattttagg ttttattgca cttgcactaa
      601 ttgttggcgg gattttctta acatcctatg ctgaaaaaga agaagatgga actaacgcat
      661 taaaacaagg tttaatcaca ttattcatat ctgcttgtgg ttatgttggc ttagtcgttc
      721 taattcaagg tttcaaaatc gatggaatta acgcaatctt gccgcaagcg attgggatgg
      781 ttttaagtgc gctaattatg acgcatagcg gtggtacgga aaaacgtttc aataaacgaa
      841 cactcttact tactattcca gggataatct gggcggctgg gaacgttgcg atggttcacg
      901 ctaaccaact tgttggcgtt gcgactggtt tttcactttc gcaactcgga gttgttatct
      961 caactattgg cggaatcgta cttttaaaag aaaagaaaac acaaaaagaa atgttttttg
     1021 ttattgtggg cgtagtttta gtcgttctcg gcgggatttt aatcggcgtt gcaaaaggtg
     1081 cttaattaat tatttcgttt agcgcgaaaa atgatataat gatactaatt gttttatttt
     1141 taaggaggga attgtgttgc ctgaagagaa aaatacgttt tatattacca caccaatcta
     1201 ttatccaagc ggaaaagcgc atatcggcca tgcttatacg actgttgcgg gggacgcgat
     1261 ggctcgttat aaacgcttaa aaggatatga tgtgttttac ttaactggaa cagatgagca
     1321 cggtcaaaaa atccaagcaa aagcgaaaga acgcggaatt tctgaacaag aatacgtgga
     1381 tgaaatcgca gaaggtttcc aagaactttg gaaaaaacta gaaatttcta atacggattt
     1441 tattcgtaca acacaagacc gtcataaaac atcggttgaa aaaatctttg aacaactttt
     1501 agaacaaggc gacatttact taggtgaata cgaaggttgg tactctgttt ctgatgaaga
     1561 atactttaca gaaacacagt tagaagaagt atataaagat gaaaatggta aagtaatcgg
     1621 cggaaaagcc ccaagtggca atgaagtcga actagtgaaa gaagaatcct acttcttccg
     1681 tatgagcaaa tatgcggacc gtttagtaga atattataat tcccatccag aatttatcct
     1741 tcctgaatct agaaaaaatg aaatgattaa taatttcatc aaacctggtt tggaagattt
     1801 agctgtatct agaacaactt ttgattgggg tattaaagtt cctggcaatc caaaacacgt
     1861 tgtttatgta tggattgacg cgctttctaa ctatattact gcgcttgggt ataatacgga
     1921 caatgacacg aaattccaaa aatactggcc tgctgatgta caaatcgttg ggaaagaaat
     1981 cgttcgtttc cacacgattt attggccaat tatgctgatg gcactagact taccacttcc
     2041 aaaaatggtg ttcggccacg gctggattct aatgaaagat ggtaaaatgt ctaaatccaa
     2101 agggaatgta gtagatcctt atatgctgat tgaccgctac ggcctagatg cgcttcgtta
     2161 ttacttatta cgcgaagttc catttggttc agatggttta tttacaccgg aagactttgt
     2221 tgatcgtgtg aactttgatc ttgccaacga tttaggaaac ttacttaatc gtacagtagc
     2281 aatgattaat aagtactttg atggcgaaat tccggcttat caaggcaatg taacagaatt
     2341 cgatcaaacc ttagtggatt tcaaaaacaa tgtggtgaag gaatatgaag gtagcatgga
     2401 tcacatgcaa ttctctgtag ctttaaacca actgtggtca ctaatttctc gtacaaataa
     2461 atatatcgat gaaaccgctc catggacact tgccaaagac gaagataaac gcacagaact
     2521 tgcgagcgta atgactcatt tagcagaaaa cttacgtatt atcgcagtac ttttgcaacc
     2581 attcttaaca agaactccag gcgaaatctt cttacaacta ggtttacaag aagaaaactt
     2641 gaaaaaatgg gatagcatct atggatacgg tgaaattcca gctggcacaa cagtggtgaa
     2701 aaaaggtacg ccaattttcc caagacttga ggcagaagta gaagttactt ttatccaaga
     2761 tgaaatgaaa ggctctgcgc cagctcctgc caaagaagcg gcggaagttg aagcacttga
     2821 aacaccgcaa atcggcattg aagatttcga taaaatcgat cttcgtgttg cagaagtaaa
     2881 acaagtagat aaagtgaaaa aagcagataa acttctttgt ttccaattag acttagggga
     2941 aggaaaactg cgccaagtac tttcaggcat tgcagaattc tatcaaccag aagaactaat
     3001 cggcaaaaaa gttatcgtcg tttctaactt aaaacctgta aaacttcgcg gactaatgag
     3061 tgaaggaatg atactctcag gcgaaaaaga tggtaagcta agtgtaatcg aagcaagtag
     3121 cgcacttcca aatggtgcaa aagtaaaata gtaaaaacga gtcctaattc atttgagtta
     3181 gggctccttt ttttcgccta aaaaaacttt taaaaaaaag attgcatatt gcaaacgatt
     3241 acaatataat gtaactatac ttacttaatt cattgaacga agtaagtggt cggacagaag
     3301 taaaggagcc tgaaaatgga tatcttaaga aaaaggaata aagacttaat taaagacata
     3361 aaccgctaca ccgtgctgaa tttaatccgt gaaaaaggag aaatcacgcg gactgagata
     3421 gccaaaaaat gcgattttgg gatgtctaca ttaacgtata ttttagatga tttacagcaa
     3481 gaaggcatta ttttggaagg tgccgaaaca tcatctactg gaggcagacg tgccaagtta
     3541 gttagattta ataaagatta tggatttgtt gttagtgtca aagttgaaga ggaacaactt
     3601 ctttttgcgt tgaccgattt aaatgcagaa atcatggaaa atacttctat accattttcc
     3661 tcagagaaaa aaccagaaga agcgattgag ttaattgcta aaaatgtgaa aaagatgtgt
     3721 gaaaacagag atatgaacca tttgctagga gttggaattg cgatttccgg cctagttaat
     3781 cgtagaaaag gaacagttat ccgctctact atgttagggt gggaaaatgt cgctttagaa
     3841 gcaatgctac atgcttactt cccagatatt ccagtgtacg tagataaaaa tataaactgc
     3901 tacacactcg cggaactatg gttaggtgaa ggaaaacaat caaataattt tgcaacagtt
     3961 tccgttggag ctggacttgg tttatccgtt gttattaatc gtcaaattta ttatggtgca
     4021 cagggtggag ccggtgaatt tggacataca acgattcaac cgggcggata caaatgtcac
     4081 tgtggtcaaa aaggatgctt agaaatgtac gcatccgaat tttatttccg aaatcgtggc
     4141 gaagaattaa aagaagctta tccaacatca gaattaaagg attttcattt tgataaagta
     4201 gcaaaaagtg ctcgagctgg agacgaaatg gcgacggaac ttatgggtaa aatgggtgaa
     4261 tatttaggat acgggattcg aaatattatt aataccttca atccggaaaa agttatcatt
     4321 gtcggtgaag gcttgcacca tagagactta ttcttaacta aaattgatga aattgcttca
     4381 caaaactttt tttcaggggc tggctttgaa acggaaatta ctacaacttc tttagaggat
     4441 cctgcatggt tacaaggtgc ggctttacta gtcattcacc aattattcca agtgccaatc
     4501 tatgaagaag aacaaacgtt actacgttaa aaagaacata aactatttca ggaggttatt
     4561 tttacatggt tggtatgact agaaagaaaa cactcttttg gctatgcata ttcttgctac
     4621 ccaatttact aggttttctc atttttattg caatcccaat ccttggctcg cttggtatta
     4681 gttttaccga ttgggactta gtgagtacta ttcactttac tggatttgaa aattacaaaa
     4741 ggctatttaa tgacccagaa ttttggaaat cgtttagaaa tacaatcacg ttcatcatcg
     4801 gttatttgcc tagtgtaatg attcttggcc tagcgtgtgc cttgatgttg aaccaaaaaa
     4861 tcaaactaag accatttttc cgagcagtgt acttcttacc cgtaatcact tcatgggtag
     4921 ctgtttcact cgtttggaaa tggctgttca atccttcata cggtttgatc aattacttct
     4981 tatctttaat tggtattgca gggcccaact ggttaacaga tccacaaacg gcgatgattg
     5041 cagttattat tactagtgcg tggaaagata ttggtttcgt tatggtacta ttccttggtg
     5101 gattgcaaaa tatttcacca tcgtattacg aagctgccaa tatggacgga gcatcaaaac
     5161 ttcgccaatt attctctatt actatcccgc ttcttactcc tactacattc tttgtgacga
     5221 taatttcgct tatcaactca ttccaggtgt ttgaccaagt gatgattatg acagaaggtg
     5281 gtccaagtgg agcgacaatg accctagtcc aaaatattta caaccatgca tttagatact
     5341 tcgaaatggg ctatgcttcc gcgatgagtt ggatattgtt tattgttatt ttcatcatta
     5401 caattattca aaataaactt caaaaaaggt ggtccaatta ctaatgaaaa cagaaaaaag
     5461 tggttcacca aaatggcaac tatttaaaaa tattcttacc tatacaatca tctgtcttgg
     5521 tggaattatc atgcttatgc cgtttgtttg gatggtatca actgcattca aaacaggcgc
     5581 agcgaacatg gtattaccgc cgcaatttat tcctaaagaa ccgacaactg cgaacttcac
     5641 tcaagtattt gaaatgttcc caatgttgcg atttttagtt aactccgtgg tcgttgcagt
     5701 tgtaacgaca cttggtcaaa tgctgttttg ttcaatggca gcgtatgctt ttgccagaat
     5761 tcctttctgg ggtcgcgata aattattttt actttactta gcaacaatga tggtgccagc
     5821 tcaagttaca atgattccgc agtttatctt gatgaaacaa tttggctggt tggattcgta
     5881 tgctggtttg attgtacccg cactattcag cgtttttggg acattcttat tacgtcaagc
     5941 attcatggga attccgaaag agctagaaga agctgcattc atggacggtg ccaatcattt
     6001 tactattttc cgaaaagtta tcttaccact tgcaaaacct acttttgcga cactcggaat
     6061 tttaactttt atgcaatctt ggaacagtta tttatggcca ttaatcgtga caagttcaca
     6121 agaaatggca actttacctt taggattatc tcttttacaa ggtagatatg gaacgaatta
     6181 tggcttaatg atggcgggtg tactaattag tgttatcccg attctagcag tgtacctttt
     6241 tgctcaaaaa tatttcatcc aaggaatggc aatgagcgga atgaaagaat aaaaaaccaa
     6301 caaaaaagga gtgttacaaa tgaaaaaagg tttattattg ttaatggtag ttgtactgtc
     6361 tgtatttggt ctttcggctt gcggcggtgg cagtagtagt ggcgataaaa cagaaataac
     6421 gtattatcaa ttctctgcac cagctgatgg aaaagcactt gatgaaatgg taaaagaatt
     6481 tgaaaagcaa aacccggata ttaaagtaaa cgttcaaaca atcgcattta atgattactt
     6541 cacgaagctg caaacgcaaa tcgcaggtgg agatgctcca gatgcttttg aacttaacta
     6601 cgaaacattc atgcaatacg ccgaaaaagg tgttcttgca gatttaacaa gctatatcga
     6661 aaaagataaa gattttgatc catctacact taacaaacaa gcctatgatg ctttcaaata
     6721 tgatggtaaa caatacggaa tggtagaaag tttctccaac gttgtaacaa tttacaataa
     6781 agaccttttt gataaagccg gcgttgaata tccgacagct gactggactt ggaaagacga
     6841 agaagcggca gcaaaaaaat taacagatgc taaaaataaa gtttggggaa cttcccaacc
     6901 agtaacaatg aacgaattct acaaagtagc agcgcaaaat ggtggttcga ttttcaacga
     6961 agacttaacg aaaacaacta tcaacagtcc tgaaaatgtg gcagcattaa ctcacttaac
     7021 aaatgaagta acagattcaa aagtggcgcc ttcaccagct gatttatctg gccaattacc
     7081 agaagattta tttatgaatg gtcaaatcgc aatgcttcac accggtattt ggttgttcga
     7141 tatgttccaa gatgctccgt tcaaatggga tgtacaagta gaagcaggaa acacgcaaaa
     7201 agcaactcac ttcttcgcaa acggcattgg tgtttctaaa gactccgata aaaaagaagc
     7261 agctttcaaa ttcgcttcct tcatgagcgc gaacgaagaa gcagcgaaaa tcagaattga
     7321 taataactgg gaacttccag cgactgaaaa caaagagatt ttacaaccat atttagatgc
     7381 aactcctcca gataacagag aagcagtatt cgaatctcta caatatatgg tattacctcc
     7441 agttgtaaaa gattggaaca aaatcagtga ttatacaaac tctgaattcg aaaaagtatt
     7501 aaatggcgat tctactccag aaaaagcact gaaaaacagc gaagacaaca tcaacaaaac
     7561 aatgggattt aaataagtaa aacgagtggc agggacgttt gtaagtatct ttacaaatta
     7621 gactgccact ttagtatatc caagaaagga aatagaacat gtctaaattc acaaaattaa
     7681 tgcagggtta cttgcattta atagaaggaa aaaacgaaaa aatcaaacca atcctgctgg
     7741 aaacaaaacc taactttaca actgattcag tccttgaaac cgcttcttgg ctatggctta
     7801 gcagtaaaat caatcattat gatagagaag aagtagagcc agtaattgca tttttagttg
     7861 aaaactggaa tcgtcctgaa aagtctattt ggggttcagc tgaaaatgat atttatttag
     7921 caactatttc aagtgtatac tctgcattat tagatgtgaa aaacactttt ccaaaaccgg
     7981 agttacaaca aacgattaca attatccgcg actattgttt tgataattta ttaaaaggcg
     8041 atagcattct tactggtttt aacacgcgga aagtgtcaac cgaccagctt ttatccgtgc
     8101 ttccgtttgg tctattttcg cctgaagatc ttgtaatggt ggcggctgtt ggcaaaatgg
     8161 aacaacaatt agtgcaagat gatggggtat tgccttattc aggagcacca agagttaatt
     8221 cctttgcaac ggctctaatg gcgctatatt tcttagaaaa aagtgaccaa gataaagctt
     8281 tacactattt gaatatggca atgaagatgg aagataatga cgaacttggc gcgattttta
     8341 ttgaaattaa ccaagcattc cgggcgatgg aaagtgaagt gacagcgcat atttcacacg
     8401 atccttttgg gcatgaaaat cgctatgagc aacagttaac tgaacgcacg ccacattatc
     8461 ccgaaacaga aatgcatttt tcggctgcgt gtgaagttat ttctgaagtc gaaccaatcc
     8521 aagtcgaact cgtcttaaaa gagaaagact ggaccattct atgtgagaag aaagaaaaaa
     8581 atgatgtcca aatctgggaa gcgctcgttc caccgttaga agaagttggc gagtatacgt
     8641 attatttccg ggcaacaatg aaagaccaaa ccactttgac atcagatgat tatacagtcg
     8701 aaccaatttg gaaacactgg tcagaggaag cggcagtttg tgaaacagag caaggcttaa
     8761 tggttttatt taaagaaaat ccatcaagta tcatcccggt cgagttcacc gcgaaatcag
     8821 atgaacttgt aatcggatta aaaccttcat ttgaagcgag caatgttaaa acaaaatcat
     8881 ccggccaatt gaaaaaagat gatttagaga ttatcgtttc aaacaatcca gtgcgtctcg
     8941 aagtacattt taaaggcaaa ttaattctag aatcgcataa aatttaccca gcgttacagt
     9001 ggtatacaga taagactggc gcaatcaaca aagtgaaact gcatttagat gctccgaaag
     9061 aagaagagta ttacggcttc ggtgaacgat acaatgcatt aggtcagcgc gggaatgtgc
     9121 ttgattgttt tgtttataat caataccgtg atcaaggaac aagaacctac atcccgatgc
     9181 cgttttatca tacgaatcgt gattatagtg tgttcgttga taccgctcgt tacacaagtt
     9241 ttgatttagg taaccaacta gcggacaagc atacaattac agtagaaata aatggctgtg
     9301 acacagatat ttgtctttta atgggagata ttcgtagtgc agtagcaaat tatatgaaga
     9361 aaactgggaa accggcgatg gtgccagttt gggcgcttgg gccgtggatg tctagtaaca
     9421 actgggaccg tgaatctgtc gttcgaacag aagtggaaac aacgcaagaa ttgcaaatcc
     9481 catcaaccgt tgtcgtgtta gaacaatgga gcgatgaagc gacttattat atgttcaatg
     9541 acgccgaata tgacgaaaaa gccccatttg aagcatataa ttacgatgaa attagattcc
     9601 cttcatgggg tagatggcca gatccaaaag ggatggttga ctatatccat gacaacaaaa
     9661 tgaagttaat tctttggcaa attccgattc aaaaatactt aaatcgccaa caacacccac
     9721 taaaagaccg cgaagaagcc tatatgattg aaaaaggcta tgtagtgaaa aatccggatg
     9781 gctcgccata ccgtattcca gaaaattggt tcacagaaag cttgattatg gatttctcca
     9841 atgaagaagg aaaaaaatgg tggtttgaca aacgacaata cttgattgat attggggtcg
     9901 atggctttaa aacagacggc ggcgaattcg tctttggtga aggtttgcaa tttgctgatg
     9961 gtagacgtgg tgatgaaatg cgtaatcttt atccaaatga ctatgtggaa gcttactacc
    10021 aatttgcaca acaaaatgat ggcatgacat ttagtcgtgc tggctacact ggcgcgcaaa
    10081 acttcccggc gcactgggct ggagacgaac gttccacttt tgatgcattt agaagatcgc
    10141 tcattgctgg actttccgct ggattttcgg gaattccgtt ttggagtttt gactttgcag
    10201 gttttaacgg cgatattccg acggctgagc tattcattcg ttctgctgaa atggctactt
    10261 tctgcccgat tatgcagtat catgctgaaa gtaaagcgga atttaatcaa gaccggacac
    10321 cgtggaatat tgcttcacga actggtgacg attcagttat cccaatttac cgccattttg
    10381 cgaatgttag aatgaatatt ttaccttata tttataatga atcattaaaa tgtgttgaaa
    10441 ctggtttgcc gatgatgcgt gcgcttctgc tggactataa agaagatccg cgtgtttctg
    10501 atatgtatga ccaatactta ttcggagaag caatgctgat cgcaccagta attgaagacg
    10561 gcgtgcgctc cagagaagtt tatctgccag aaggaacttg gtatgatttc tggaatggaa
    10621 caaaagtgaa cggaccaact ttacgaaaat gcaaagcgga taaagaagaa attccagttt
    10681 tcattcgtgg tggaaaagca gtgctatgta atgtggacgc tacattgaaa ctcggctcat
    10741 gggttggcaa cacagtggaa gaatacgata caccactact taaaatttat gtggacggtg
    10801 atttcacaga agaaatgacg gatcacttat ccgaaaaatg gctagtaaaa gtaacggaaa
    10861 atgcggacga agtagttgtt tctgttcaaa caaacacacc ggcatatgaa gttgaagtaa
    10921 tcggcacgac caaaaaagta caaataaaga aagggagata atgatggatg cttccacaag
    10981 ttttgcgatt ctaccatcta atgtaaaaca aaaaacagct ttcgaaagaa aagtaaatca
    11041 agtgaaaacg gctagttggg cgaataattg cctgactggc acacttgata tcggtcagtt
    11101 cagttgctat tttgttaatg aaaaaattgc tcgcgtgacg gtgaacccat ttggagaagt
    11161 ggatttaacg ccttcgattg ctgcgattca cgatacggaa aaacaagcgg ctaaatttac
    11221 agaaacaacg gacggctatg agcttcattt tgcggataaa gagattatta tttgtaaaaa
    11281 tcctttccaa attattatga aacaagctgg gaagcgtatt ttccaaacag aaggattggc
    11341 aattaatcgc tataaagaac accaaatttc gattcaaagc gaaccaggaa ccgcgatttt
    11401 tggtttaggt gaaaaaacgg gtgccttgaa taaagccggt tccattatta gtatgtggaa
    11461 cacggatgta tacagtccac ataataaaga tacagtggag ttataccaat ccattccttt
    11521 catgattgcg gatactgcgg aaacaaccta tggcttattt tatgataatt cgcatcgtac
    11581 agaatttgat ttccaaagtt ttgaagaaat gtatacgatt ttagcagaag gcggacaagc
    11641 gaatttatat gttatttttg gtgaggacac gaaagaagtt gtcgcgaatt acactgattt
    11701 aactggtaaa acaccacttc caccaaaatg gtcattaggt tatcatcaat caaggtatag
    11761 ctacacctcg gaagaagaag tggaacggat tgcgaatact tttaaagaaa aagagattcc
    11821 gcttgactgt gtattcatgg atatacatta catggatgat ttccgcgtat tcacttttaa
    11881 cccggatact tttccaaatg gaccagaatt gattgcgcgt cttcgggaac aaaatattga
    11941 cgttgtacca attgtcgatc cgggaattaa aaaagatgtt gattattctg tttatcaaga
    12001 ggggatcaaa cataattatt tctgcactaa attagaaggt tcgatttatt atggggatgt
    12061 ttggccgggt gtcagtgctt tccctgattt tctaagtaca actgttcaac attggtgggg
    12121 cggtttacac aaattttaca cagatttagg tatacgcggg atttggaatg atatgaatga
    12181 gccgtctgta ttcaatgaaa gtaaaacgat ggatttagat gttgtgcata atctggacgg
    12241 gaaaaatgta acccataaag aagcgcataa tttatatgga ttgtatatga gtaaagctac
    12301 ttttgaaggg ttaaaacggc ttgtgccaaa tgaacgtcca ttttcactca ctcgtgctgg
    12361 ttatgcgggt gttcagcgtt attcggcggt ttggacagga gataatcgta gtcactggga
    12421 gcatttggag atgtcgctgc cgatgattat gaatttagga ttatcgggcg ttgcgtttac
    12481 cggtgctgat gttggtggat tttcttcaga ttgtacgaaa gaaatgttga ttcgttggac
    12541 gcaagctggg gcctttttac catatttcag aaatcactgt gtacaagata gtatttatca
    12601 agagccatgg gcgtttggcg cggatgcaga gaaaattgtg aaacaatata ttgaattgcg
    12661 ctatgccttt ttaccgtata tttatacaga attccaaaaa acggcagaga gtggtttacc
    12721 gctcgttcgg ccgctttata tggagtttaa agatgaacgc gatttaattc aagtgaatga
    12781 tcaatttatg ctaggtgaaa atatcctcgt tgcgccaatc gttcgtgaag gccaagtgaa
    12841 gcgtctagtt cgtttgccaa gagggctttg gtttaattat tggacaaaag agcagttcgt
    12901 gggcggcgac tatattatcg cagacgcgcc gattgatacc atgccaattt acattaaagc
    12961 ggggacaatt ctgccagttg gtagcagcgt tcaaaataca aaagagacgc aagatttgac
    13021 attagaagtt tacttagatg gcgacgtagc aagcggttat gtgtataatg atgatggtaa
    13081 aagttaccat tatgaaagcg gcgcagcatc caaaacaaca ctcacagcta ctttcaaaaa
    13141 tggcgaagta ctaataaatg ctacccatca aggtgaagca aacttacaac ataaagtaac
    13201 tactatacaa gtttttggag aaaaaacaga caaaattaca agggcgggaa tttaatctat
    13261 gaaagaaaaa gattggtgga aaaaaagcgt agtgtaccaa atctatccaa agagttttaa
    13321 tgattcaaat ggtgatggag ttggtgatat tcaaggaatt atcgagaaat tagattattt
    13381 aaaagagcta ggtgtggacg ttatctggtt gtccccagta tacgattcgc ctcaagatga
    13441 caatggttac gatattcgcg attatcaaaa aatttacgaa gagtatggag atatggcgac
    13501 ttttgatcaa ttacttcaag gtttacacga ccgcgaaatg aaacttgtaa tggatcttgt
    13561 tgttaaccat acttctgatg aacacaagtg gtttgaggaa tccagaaaat ccaaagacaa
    13621 cccgtacaga gattactatt tctggcgcga ggaaaacgaa atcaataact ggggctcgat
    13681 tttcagcggt ccagcatggg aattggacga aaaaacaggt gagtactatt tacacctgtt
    13741 ctccaaaaaa cagcctgatt taaactggga aaaccctaaa ttacgccaag atgtatataa
    13801 tatgatgaaa ttctggctag ataaaggcat tgatggcttc cgcatggatg taattaattt
    13861 tatttccaaa aatactgatt tcccagatgg tccagtacca gatggtcaaa tttatggcga
    13921 tgctggcaat gatttttgta atggaccgcg gattcatgag ttcttgcaag aaatgaacca
    13981 agaagttact tctaaatacg atgtgatgac tgttggcgaa atgcctggtg ctagtacaac
    14041 cgacgcgcaa atttacacga atccagcaaa taatgaagtc gatatgattt ttacatttga
    14101 acatatgaac ttagattccg atggcgacaa taaatgggat ctaaaaccaa tctacttacc
    14161 agatttaaaa gaaaatatgt ctgaatggca agtggcgctt caagaaaacg gttggaatag
    14221 cttatattgg aataatcatg accaaccgcg tatcgtttct cgttttggga atgacaatcg
    14281 tttccgcgtt cgttcagcga aaatgcttgc aacttgtttg catatgatga aaggaacgcc
    14341 atatatttat caaggtgaag aaattgggat gacgaatgtt cattttgaaa cgctagatga
    14401 ttaccgtgat atcgaaacgc taaacatgta caaagagcgt aaggagcaag gacacagcca
    14461 tgaaagcatc atgcagtcga tttacacaaa aggccgtgac aatgcgagaa cgccgtacca
    14521 gtgggataat agcgagaatg ctggcttcac aaccggaacg ccttggctta aagtcaaccc
    14581 gcgctataca gaaatcaaca acgaagaagc gctgaaaaac ccagattcca ttttctacta
    14641 ctaccaaaat cttattaagt tacgaaaaac gactgaaatc atcacaactg gtaattatcg
    14701 tttgttatta cctaaagatg aagcgatttt cgcatatgaa cgctacacag aaaatgaaaa
    14761 attagtggtt ttatgtaatt tcacagaaga agaacaagtt atttctgatg aaaacatttt
    14821 gaacgaaatc caaaaaggtt ccgtgcttgt aaacaatgtt cctaatatta tagaaggaac
    14881 tttacgacct tacgaagcaa tcgtttatca aatcaagtaa atctcaggaa agccaccaat
    14941 tgctaggtgg ctttttttgt atgcatcaaa aattatagta taatagaagg aaatgatttt
    15001 attaggagga attctcttgc tatttgatac gcatgtacac ctcaatgacg aggcttttga
    15061 tgatgatata gaagaagtaa taaaacgcgc acaggaaaac gatgtgactc gcatggccgt
    15121 ggtgggcttt aataaagaaa caattgaccg agcgcttgaa ttagccgaga aatatgattt
    15181 tatctcatta atcgtcggct ggcatcccac agacgctatt accttcacag atgaagattt
    15241 agaatggctc cgcgatttag cacttacaca cccgaaagta gttgctttag gcgaaatggg
    15301 cttagattat cactgggata cttcgccaaa agaaacgcaa tttgaggttt ttagaaaaca
    15361 aatccgttta gcgaaagaag tgaatttacc gatagttatt cacaaccgcg aagcaacaga
    15421 agatgttgtt cgtattttgc aagaagagca cgctgaagaa gtaggtggaa ttatgcattg
    15481 ctttggtgaa actgtcgaag taatggaagc atgtctagcg atgaattttt acatttcatt
    15541 cggaggaaca gtcactttta aaaacgcaaa attaccaaaa attgcagctc aagctatacc
    15601 aattgaccgt ttattaattg aaactgacgc gccgtatctc gctccaaccc caaatcgcgg
    15661 aaaaagaaat gaacccggat acgtcaagtt agttgccgaa aaaattgcag aactgaaaga
    15721 aatgaaatat agtgaaatcg ctacgcactc aacagaaaac gcaaaaaaac tatttaaaat
    15781 aaaagattga ttgtaacaca attgtaatat aaggaccagt ctgtaaccca atcttaagct
    15841 tcacggagat aaaaatgatg actgggacaa aaacccttat tttatgccta cgaccagaga
    15901 tgtagaaaaa tgacacattt ctgttacatt tgacacttta aaagaataat atttttaaaa
    15961 acggctctat atcaacgttt tttgttaaag tttgcgaagg tgtgaacaat ctgtataaaa
    16021 aattgacagt tcttccctcc cctgtatata atcactagcg aagtagaaag gggagaaata
    16081 catgaccatg gaaaacagca gtaacgtagc ccaatcatca aaatggaaat taccaatcat
    16141 gattgcagga tttgttattg tagtagcatt ggttttttat ttcgttttcg aaggaactaa
    16201 aaacgatatc actatagtaa acgctggtga aaaaattgaa tcaagaacac atgcgaaaac
    16261 tgtttcagaa gcattagacg aagcaggtat taaagtaagt gaacgcgatg aaattgcgcc
    16321 aggcaaaaat gcagaaatca aagacggcat ggaaattaaa tatttgccag ctcgtcaaat
    16381 tacaataaat gataatggta ctaaaaaaga cgtttggagc acaaaagcaa acgtagcaga
    16441 cttgcttaaa gatgaaaata ttacaactcg tccgcaagat gtattaaacg tagcattaga
    16501 tactaaattg aaaaatggcc ttgaagttaa cattaatcgt gccattcaac tttccttaca
    16561 aaacggagca aaaaaagata cagtatggac aacaaaaaca aaagttagtg atttactagc
    16621 tgagaaaaat attaaacttg atcaagatga ccgtgtgtca cctgcaaaag acagtaactt
    16681 aaaagaaaaa atgactgtag aagttacata tgtcaattca aaagcagaaa agaaaaatga
    16741 acaagttaaa ttcgaaacag tatataaaga agacgatagc ctaaacaaag gcgttgaaaa
    16801 agtcgttcaa gaaggtaaaa acggcgaaaa agttgttgag tataaagtaa catttgaaaa
    16861 tggcaaagag aaaaaacgtg atgtcattaa agaaaatgtc acttctaaaa aaactgataa
    16921 agtagttgta cgtggcacga aagaaaaagt ggtagcaaca ccagtttcta acgtatctac
    16981 tccaagtaca acgtcatcat catcatcatc atcaactcca tcaggtggta aaacatacag
    17041 aatggaatct actgcatatt caggtggcgg tactacagct tatggtatca acctaagtgc
    17101 caaccctgga ctaaaagtaa ttgcggttga tccacgaatt attccacttg gctctaaagt
    17161 ttgggttgag ggatacggag aagcaatcgc tggagatact ggcggcgcta tcaaaggaaa
    17221 tatcgttgac gtgtatttcc caaatgaaag tcagtgctat tcatggggta gaagaatggt
    17281 gactgtcaaa gtgttaaact aaattcgtat aaaaacgagg ctgactcata gggcctcgtt
    17341 ttttctttgt ccaaaatgtg gtatgatata tttacttatt ttataaaaaa ggatgtagta
    17401 attatgaacg ggaagcctgt aatacatgaa tttatagtcg tagaaggacg ggacgataca
    17461 acggcaatta atcgttcagt tattgctgat accattgaga ctaatggatc tgccctttca
    17521 caagaaacaa tagaaaagat tagacatgca caagaacttc gcggcgttat tatttttaca
    17581 gatccagatt ttcccggtga aaaaatccga aaacaaattg actcagcggt acctggctgt
    17641 aaacacgctt ttatcaatcg ccaagacgct ttgccaaaag caggtcgtgg ccttggagtg
    17701 gaacatgcca gtagcgctaa tattcgggaa gcactcgaaa acttccatac aagtgggacg
    17761 cctgcagaaa aacaatttat ctccaaagat attcttattc atctcggtct tcttggagga
    17821 gcgggagcga aagaacgccg agaaaaaatc ggtaatatac taaaaattgg ctatacaaac
    17881 ggaaagcaac tgcaaaccag actagaatca tttgcaatca gtgaagacca gttagtagcc
    17941 gcgtgccaaa agattatgca ggaggaagaa aatgagtaaa gatattgcaa ctcccggaag
    18001 aacgacagaa atcctaaaga agtatggttt cttatttaaa aaaagtctgg gtcaaaactt
    18061 tttaatcgac agtaacattt tgacgcggat tacagataca gccgaaataa caaaagaaac
    18121 aaatgtcatc gaaatcggac caggtatcgg cgcgctaaca gaacaattag caaaaacggc
    18181 gaacgaagta gttgcttttg aaattgatca acgtttactg ccaattcttg acgatacgct
    18241 aagtgcatac aataatatcc aagtggtcca cggagacgtg ctaaaagcag atgtggagga
    18301 agttatcgca gagcaattcg cgaagccaga tctacctctg aaaatcgtag ccaaccttcc
    18361 gtattacgta actacaccga ttattttaaa attactccat gacaatattc cggcagattc
    18421 gatgacgttt atgctccaaa aggaagttgc ggaccggata agcgcagttc caagcacgaa
    18481 aagctacgga agcctaacaa tcgctatcca attttacatg gaagcagaac tagcctttat
    18541 cgtgccaaaa actgtcttca tgccgcaacc gaatgttgat tccgcagtaa ttcatctgaa
    18601 gcgtcgcaaa gaaccattag ctgaagtaaa cgacgaagaa tttttctttg aagtaacaag
    18661 agcttcgttt gctcagagaa gaaaaacgct ttggaataat ttagcttcaa aattcccggc
    18721 tttaaaacca cgcaaagacg agttggtaga aggtctaaat gctattggga tagacttaat
    18781 ccgtcgtgga gaaacgttgg atattccgga atttgctaaa ttaagcaact ttttaggtga
    18841 ttttttaaag gaaaaataat ttttttcaaa aaaagcgctt tcttagttga cagttagccc
    18901 ttccaactgt taaaatattt ggttattgat ttcggagccg aactatgcta taatggatat
    18961 tagtgaggtg gaaaataaat gccaaaaacc attgcaagca ttaagacgaa tttagattct
    19021 agattaggta aagcattgac attgaaagca aacggtggtc gtaagaaaac gattgaacgt
    19081 tgcggtatcc tagctgaaac atatccatcc gttttcattg tggagcttga tcaagatgaa
    19141 aacaactttg aaagagtatc ctatagttac acggatatct taacagacgc agtagaactt
    19201 gtatttacag atgataataa agaattagct ttataataaa gctgaagtag ccgaaccata
    19261 tagcgtggtt cggtttttgc tatacataga agttgttttg ggccgctagc tacatatttt
    19321 ttctttcata tgatagaata gaaaaagaga ttttgaacgc ggaggccaag aaaaatgaaa
    19381 ataagcatta cagcaccagc taaaattaat ctttcacttg atgcgctgta caaacgtgag
    19441 gacggctatc atgaagtgga aatggtgatg acaacaatcg accttgctga tagattatac
    19501 ttagaacgct tagacgaaga caaaattgtg ctggatgtaa aggcacactt tattccagaa
    19561 gatcgtcgca atttaattta tcaagcagcc ctccttttaa agaagcgttt tgacgtaaag
    19621 atgggtgtgc gcattacaat tgataagcac attcctgttt ctgcgggtct tgctggtggt
    19681 agttcagatg cagctgcagc gctcaaagga ttaaatgtca tttgggaact tggtctttca
    19741 atagaagaat tagccgaaat tagttcggaa attggttctg atatcgcttt ttgcgtatac
    19801 ggcggaacag cgctagcaac tgggcgcggg gaaaagattt ctgcgttacc taatattcct
    19861 ggttgttgga ttgtgcttgc taaaccgagc attagcgtgt ctaccccgac tatctataaa
    19921 gaacttcaag tagataacgt agaacaccca gacacacaaa aaatgattga atccattaaa
    19981 aatggcgatt tagacgggat atttgcgtct acaggaaatg tattagagtc tgtgacatta
    20041 gaaaaaaatc cgcaagttaa acgaataaaa gatcggatgt tagcgtttgg tgctgaggcg
    20101 gccctaatga gtggtagcgg tccgacagtg tttgcgctta tcaaacagta ctccagagca
    20161 aaacgtgtct ataacggctt gcgtggcttt tgtgaggaag tttatatggt tagaccatgg
    20221 agtgaaggcg agaacgatac aaatataaat aattaatgaa tgagaggggt caaagaaatg
    20281 aaaattattt ttaatgcaga tgattttgga attagcccgg gagcagttta tggtatttta
    20341 gagtcttata agcgaggcgt tgtgaaatct accacgcttc ttgctaatag cccggcattt
    20401 gatttggcag ttgaagttgc gaaagaaaac ccaggtctcg atattggtgc gcatttgacc
    20461 ctgacgttcg gttctccagt ccttcaaggt ttagaaacgc taacggatga tgatgggcgt
    20521 ttccgcagaa attatacctc acttgaaaac ggcttagctg atgtagatat gaatgaggtg
    20581 gagcgcgagt taactgcaca aatcgagaaa attttagatg caggaatcac tatttctcat
    20641 tttgatacac atcattcaat tgagccgcta atttatcccg tacaacataa acttgcggaa
    20701 aaatacggtg tgagcattcg acgtcattct gatgtttcgg acttcggtgc tataaaaact
    20761 cctgacttat tcgctacgga gttttatgca gacggtgtat cttttgaaac gattaaaaaa
    20821 ttagtacaaa agcatatcgg aacgaatgat gtagtcgaag tgatgactca tccggcattt
    20881 attgatgaaa cgttgcgcga aatatctagt tacgtagagc cgcgcatcaa agaagtttca
    20941 attctaactt caagagaact acaagcatat ttaggccaac aagaagtaga gattattagt
    21001 ttccgcgatt tataagagca tgggcctgtc aaaggatgtt tatttggcag gcttttcgtt
    21061 aggttaaaat aataaatgtt gtcaatttta tagaaaacgt tttataatag agaaaatacg
    21121 gacaaaatac gtgaaatagc tttttaatat acggaatttt atcaaaggga gagagattat
    21181 gaagattcgt cgcagtgaac gattaattga tatgacgcag tttctattat cgcatccgcg
    21241 aaagttagtg ccgcttacga tgtttgctga acgttatggc tcagctaagt cttctattag
    21301 tgaagatttg gttatcataa agaaaacatt tgaagacaga gggattggta cgctcgaaac
    21361 tgttccgggt gctgctggtg gtgtgcaata tatttcgata gcgggaaatg acgatgtgct
    21421 ggattttgtg catacgctat gtaatagaat tgcggagcca aaccgtttgc ttccaggggg
    21481 ctatttgtac ttatctgatt tacttggaga accagtaacg ctcaaagcaa ttggtaaaat
    21541 tttagcaacg aaattcaata accaaaaaat agatgcgatt atgactgttg cgactaaagg
    21601 gattccgatt gcacaagcgg ttgctgaaca tttaagtgtc ccctttgtta tcgtacgtcg
    21661 tgatagcaaa gtgacagaag gctcaactgt aagcattaac tatgtttcag gttcatccaa
    21721 acgaatcgaa aaaatggaat tatccaaacg aagcttagct gaaggctcta atgtagtaat
    21781 tgtggatgac tttatgaaag ctggaggaac aattaatggt atgaaaaatc tgctagaaga
    21841 attcaacgcg catttagttg gaattggcgt gttagttgaa tccgaatatg cggaagagcg
    21901 cttagtggat gattacgtat ctcttgtaaa aataaaaaat gtgaacatga aagaaaaaca
    21961 aatcgaagtt gttgatggga attactttaa tagttgattc taaaccctgg aaaatattct
    22021 ggggtttttc tttttttggg gggcgaattg ctactaaaaa caaatcagtc ttccgatgta
    22081 cttcactcag ttaactttta tggtagaatg aattctatcg ttactacata aaattcaagg
    22141 cttctagact ttaggagcag aaggagaaca ttcatgaaaa agtgggttaa atggttaatt
    22201 gttatcgtaa ttatcgcagt agtagccgtt ggtgcggttt tcttgctgtc gaaaaatagt
    22261 ggctccgtaa cacaaggaaa attagttaca gccaaagtaa aacaaggaga tatgaaaatc
    22321 aatgctacag gaacaggcgc gatttctccg gtaaacacac aagttccaga ttacgatgaa
    22381 cttcaattag tagcgcaaat ggacgaactt gatattccta acatcaagaa agaccaagaa
    22441 gtaaaagtca cagtaacagc actacctgac aaaacttata caggaaaagt gaaagaaatc
    22501 gcagaacaag gtcaagtaca aaatggtgtg tctagcttct ctgtaatcat ttctcttgat
    22561 aaaacagacg atttaaaagc gggtatgact gctgatgctt ccattttagt aaatgagaaa
    22621 aaagatgcgc tatacgttcc aattgaagct gttcaaaaag acagtgacga caaatattac
    22681 gtattagttc cagaagaaaa agacaatggg aaaacgaaaa aagtgaagaa atttgtagaa
    22741 actggtcttc ataatgaaga taatatcgaa atcactaaag gtgttaaaaa aggcgaaaaa
    22801 gtaatccttc ctacacaaga aacttctacg gttcctggtg ctcctagcta agttttttgt
    22861 aagtacaaat cagacaaatt gtatgaagga gggataaaca tgccaaaacc gctaattgac
    22921 atgaaaaatt taacaaaaac gtatacgcta ggcggagaaa cttttaaagc attagacgat
    22981 gttactttta ccgttgagca aggcgagttt ttatccatcg ttggtccgtc cggttccggt
    23041 aaatccactt taatgaatat gattggttgt ttggatgttc cggatgaagg cagctatcac
    23101 cttgatgatg tagatgtttt taaactgagc gataataaac tatccgaaat cagaaataaa
    23161 aaaattggct ttatttttca gcagtttaat ttgcttccaa aattatctgc ctttgaaaat
    23221 gtggaactac cactaattta tgcaggacta agtgtttctg cacgagaaaa agccgcaatc
    23281 gaatgtttag aaaaagtagg cttacttgaa aaacgtagaa acttaccaac gcaactttct
    23341 ggtggccaac agcaacgtgt ggctatcgca agagcactcg ccggcaaacc gcaaattttg
    23401 ctagcagatg agccaactgg tgcgctcgat tcgaaaacag gtaaagaagt aatgggaatc
    23461 ctacaagaat tgaatcgtgc tggaaacacc atcgttatga ttacgcatga tccaacaatc
    23521 gcctcatacg gtacaagaag tatccgtatt caagatggta aattattcca tgaggaggcg
    23581 acgcaagcat gaatgttctc caaagcatga aaatggcatg gaaacaatta aaggcaagta
    23641 aattaaggtc ttttctaacc atgctaggta ttattattgg tgtcgcatcc gttattcttt
    23701 tagtatctct agggaatggt gtaacgcaag aagttgatga ccaaatgggc gatttgggtt
    23761 cgaatttaat tacagtagtt aatagctctg ttaatccaaa cgacaaatat acgtatgatg
    23821 aagtaatgaa atatcaaaac attgatggag tcaaaagcgt ttctccagaa ttatctggac
    23881 aagtcaatgc aacttttgat tataagaatt caagtaataa ggtgataggc acgaatgacc
    23941 aatataaggc cgcgcgtagc ctagaaatga aggaagggcg tttcctacta ccgattgata
    24001 ccgaatatgg ccagaaagta gctgtaatag gctctacggt agcaagtgat ctatttggtt
    24061 ttggggatcc gattggcgaa accattagat taaacggaat gccttacaaa gttgttggtg
    24121 tcttgaaaga aaaaggcgcg tctatgatgg gatctagcga tgaccaaatc tttattccga
    24181 tttcttccgc tcaaaggctc ctaaaagata caaatgtccg tacaatctat gtagaaacaa
    24241 aatctgccga agatgttgat tttgtagtaa acacactaga atcacgtctt gcgattaaat
    24301 ttggtgacga aaaagaacaa gaaaaaaatg cgtcatccgc acaaatggga ccatcttatc
    24361 aagtcattaa tcaacaagag attctcaatg ctttcaacac gattagtaca acgctaacta
    24421 ctgcgcttgg tgcgattgct gctatttcac ttgttgttgg tggtattgga attatgaata
    24481 ttatgctagt ttctgttagt gagcgaacga gagagattgg tataagaaaa gcgctcggag
    24541 ctaaaaaacg agccatcctg ttacaattcc taattgaatc cattgttatt agtgtctgtg
    24601 gtgggattat cggtattatt atcggggtct caggagcgct catatttggc tcagtcgcag
    24661 gtatatcgtc aggaataact gcaggaacca ttatcttctc cttcgtattc tcactatgta
    24721 tcggagtgat atttggtatc gcacctgcta ataaagcttc gaaattaaga ccaattgacg
    24781 cattaagatc cgaataaata aaagaagcct gaaataagct gtttcgggct tcttttttta
    24841 ctaaaattag ctactaagtt gtcttgtcat ctatatttaa tctttttgtc acaattaaac
    24901 gctttcaata gccggttttg gtaaaaaatt tagaat
//
LOCUS       DABQVC010000017        24798 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.017,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000017 DABQVC010000000
VERSION     DABQVC010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 24798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24798
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.017"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            167..1936
                     /locus_tag="IBJ56_000470"
     CDS             167..1936
                     /locus_tag="IBJ56_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3416754.1"
                     /translation="MKIYKALGWFFKENWKSYAFGVTILFTIALLQLVPPQIIGYTVD
                     AVTNDSLTKDKLIKWMIILVVAAILAYGGRYVWRMLIFGSDNKLQRTLRLRLFEHFTK
                     MSPFFFQRYRTGDLMAHATNDITAIQQVAGIGVLTLSDSVLTGGTVIATMAITIDWRL
                     TLIALLPMPFMVLGSSILGKKLHDRFHGAQAAFSMLNDKTQESISGIKVTRTFGQEKE
                     DIQDFAKQTKEVVQKNISVAKVDAMFDPMISIIVGISFVLSLGFGAKFVVDGELTIGQ
                     VIAFSNYLFLLIWPMLAFGFLYNIIQRGNASYDRVQHLLAEKEDVLDQEGALDTVPVG
                     DLQVAMDKFTYPDESEPVLSDIHFELKAGETLGIVGRTGSGKTSLLKLLMREYDTYEG
                     KIAFANVKIQDYTVRALREAIGYVPQDQFLFSTTVRDNIRFGKPDAPQEEVTKIAKLV
                     AVDEDILGFENGYDTIVGERGVSLSGGQKQRLAIARALIMNPELLILDDALSAVDAKT
                     EEQILANLKENRSDKTTIISAHRLSSVEHANLIIVIDKGQIVERGTHKELMALDGWYA
                     EMFHEQQLEEALEEGGAADGSDE"
     gene            1920..3725
                     /locus_tag="IBJ56_000471"
     CDS             1920..3725
                     /locus_tag="IBJ56_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416755.1"
                     /translation="MEAMNEQDEMLVMSGKEHREVLKRMLSYTKYHIPSLIWTGVLVL
                     LVTLADVFAPILIKIFLDDYLTPMNLEMQALLILGAGYLGLTIGKSVVWYFQLLFFQK
                     IALEIVQQMRIDIFTKLHSLGMRYFDKTPAGSIVSRVTNDTEAVKDMFINVLSTAIQS
                     LFMLVGIYAAMFALNVQLALYSLLLFPLIVFIIFVYRKYSSQFYRARREKLSQLNAKI
                     AESISGMSIVQQFNQERRLVKEFEKINKDYYDVGMKNIKFNALLLGPAIDLIYALAVV
                     IILSFFGAESLIGPVAIGTIYAFISYFDRFLEAIYNVMERLAMYQEAITAASRVFRIM
                     DETEEVPAQLNDPEAKITRAKIEFKDVSFAYEGGRDVLKNISFTAEPGQTVALVGHTG
                     SGKSSIINLMMRFYEFERGDILIDGKSIKSHEITELRKKTGLVLQDSFMFYGDINTNI
                     RLYDKSITDEQIVDAAKFVQADGFIQTLSDEYNHKVIERGASFSSGQRQLISFARTVV
                     TNPQILVLDEATANIDTETESLIQTGLKRMREGRTTIAIAHRLSTIKDADLILVLSKG
                     RIIERGTHDTLIAEEGVYHSMYQLQNSGMDLDEAL"
     gene            3806..4294
                     /locus_tag="IBJ56_000472"
     CDS             3806..4294
                     /locus_tag="IBJ56_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcdC family protein"
                     /protein_id="HAM3416756.1"
                     /translation="MSLIISIIITLVFGAGIIMIRMKASKRPASVKGIIIPPIMMSTG
                     ALMFVIPFFRVSWVDILEAIAMGLVFSVILIWTTKFEIRHKYVFIKRTKAFPVILMGL
                     LLIRIFIKYWISGSLEVGELSGMFWIMAFAMIVPWRIVMYFQYKNTEKELNKVEVSGE
                     YE"
     gene            4468..4983
                     /locus_tag="IBJ56_000473"
     CDS             4468..4983
                     /locus_tag="IBJ56_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416757.1"
                     /translation="MKKWLLVVLTLALGLSLAACSGSNSSDKKEDTKKETTSDKDKVL
                     NYYMDLVDVVNENNGDYNAYVGAVGADPKPSEADLAALAKPASESALKVSEALASEKT
                     PDLGKSTDDFKAAVKQLSDAYKLEADALKASGRDTTKADEAMAKADEAIAGVLKDAGL
                     NPSSITTDTAS"
     gene            complement(5025..5633)
                     /locus_tag="IBJ56_000474"
     CDS             complement(5025..5633)
                     /locus_tag="IBJ56_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HAM3416758.1"
                     /translation="MFYHFAKNLVHFILIIIGGRFQVQNKDKIIEAPYVVVSTHTSWI
                     EILYLGFALSPTPVHYMAKQELFKGKFLNWLMTHLNAFPVNRDNPGPSAIKAPIRMLK
                     SGKVVGIFPSGTRKTTNLHLKRGAVTIAHKAKVPMLPAVYDGPKTFGEILKRKKIIIR
                     FGDPVLFNDTELDQKELLEVKSQELMATFEQLQNEINQTKNK"
     gene            5749..6873
                     /locus_tag="IBJ56_000475"
     CDS             5749..6873
                     /locus_tag="IBJ56_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HAM3416759.1"
                     /translation="MKFLHTADLHLGKIVSGVSMLAEQEYILAQITKIAEEEQVDALI
                     LAGDLYDRAVPPADAVKVLNDILVKWNVELGIPIFAISGNHDSAERLAFGSQWYESSK
                     LYMKGKCTSQFEAISFMDAEVWLVPYHEPAIIREAFADNSIRSFEDAMQAVTKQIRSK
                     WDTSKAQILVGHAFVSGGIPSDSERQLAIGNVDRVSTDCFDGFTYTALGHLHHPHAIR
                     HPSIFYSGSPLKYSFSEANDHKSVRIVELEGKELVSVTERFLTPKHDMRIISGTLAEL
                     TENLVENPDDFFQVNLMDEGALIDPMGKLRQFYPNILHLERKKQTLKETQDNFEEIMK
                     KDDLELFGQFFEHVNGTELTETQKQKLADVFEQARKGDAE"
     gene            6870..9941
                     /locus_tag="IBJ56_000476"
     CDS             6870..9941
                     /locus_tag="IBJ56_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HAM3416760.1"
                     /translation="MRPIKLTMQAFGAYAKKEVIDFEKLGTEQIFVISGKTGAGKSTI
                     FDAISFAIFGKANTFDRESFSMRSHFATDKEITEVTLAFRLKDKIYQINRIPQQEIAK
                     QRGNGTTTSPQKAELYELIGDEMKLLASSVRDVNAKMEELIQLNVDQFRQILMIPQGE
                     FRELLVSDSKEKEVILQRLAHTAYYEKVENLLWEKQKQAEILVVEARKKVAELAELSL
                     PDGEVSGKTTSEISVLQNEAIQKEQAILTELENKLSIIRKQTSEAVEKVTLAKEQLLD
                     WQNLDKYTEEVATLEAEKDFYQTMEVRMEAAKRASNLQSQDALCIRLKEQLETAEQTE
                     KQVALEAEQVKAQFSHAKKQKEALAEKEAELEINKRTLFQLEEMEPKILELETVLIQK
                     RRAELDWKKTTTLLEKIIDKEQKIATELQSVEARLAEINKAELMYLEVINKRTTLEAR
                     IEKEQELVNKRIKMEEWDAAKQTEEQTLAQLLIEKAEMERTIKQEETKLEKEQAATIA
                     AHLHEGDACPVCGSQSHPVLAKFGETADLETLEIAKAKLQEKQLVLTTTEKAISQLEW
                     QLNEWADMKEQSLAEIQQTLAENIQLATNLREQITQLQSEVAQKETVQATLESLKNRQ
                     NETLTEKNKMALEVEKLHQQVQLTEGKRTYLEQSIPDELRDKAVFDNKMKELSSKIET
                     HIKQAEQIDALFRQAEKETTRLESTLHSAQKTTVDAKEALQVQREIFKEAMKQNDFLS
                     YDAYKQALLSVEELKNLEEKLAEYERKRHLAVSRQADLKEKLQNKQKPNMEQLEFIMK
                     EKQLELSQSEENTMKQREFVAKRKELVENYQNSIQAVEQAEENYADIGLLADAARGKN
                     ARRLTFERYILAMFLDTIIHRANHRLSKMTSGRFELQRKMEKAKGNVQSGLELEVFDE
                     YTGLTRHVKTLSGGESFKTSLALALSLAEVVQEMAGGISLETMFIDEGFGTLDPESLE
                     AAVECLLETQENGRLVGIISHVPELKERISARLEVTATNHGSTTKFITASS"
     gene            10025..13243
                     /locus_tag="IBJ56_000477"
     CDS             10025..13243
                     /locus_tag="IBJ56_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HAM3416761.1"
                     /translation="MEHFTAIQNKMIPYSVKQAGKKLMEDGEIIQFREKDASDHFSTY
                     FIDQNVVEDAGNENYACSCADFQLNAICKHIYATHLKMEKEKQKAAKQDFKNRILTQE
                     SNTLLSLFQQNMAQQLEVEEDNTNKTPLQTQYIIRLKPDDSSYIMTIEVKVGTERTYV
                     VKNMNTFLAAIRDRQWLVFTKNFAYDPNEHFFLEEDKQILDKLLQISEIAKMYDTDSF
                     YWSKSYAEEKNLTIPPSMASDLLELLTERDTTCIIMKERVEDIKYRGINVRHDNLDFI
                     FELKKSAEDKYQLEMEDLQQAIFFEAYQLLFFDGTFFIPAKEVWESLKPLMEFHKVTK
                     NEVVQFSESQLSEVISYVLPALQKSGKLKLDDSIEDRITQQPLDCKLFIALEYGEHTL
                     RLEYHYGNQLFDPFATSEEENEKIMIRDVEKEARVMNIIESAPVHFSGTKMVVNKQEK
                     DLYQFYYRTIPKLAEYAEIYMEDGLEEMVEENVRPVTTLDVSGDNDYLSVSFDFKGIP
                     EEEVQNVLESLREKRSYHRLKSGRFLSLESENYKQMEDVLQMLEVRKKDVQANMQVPL
                     YRGMQIYDILGAGAQDEHHKFSRSFRELLTDITTQSEDSFALPKGLKAELRDYQLTGF
                     EWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEDNPNLKPVLIITPASLLYNWQS
                     ELEKFAPAIPVTVLHGTKQSRIAEMEEMKHGHVYLISYPSLRQDIVHFADVAFSSVII
                     DESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF
                     KEIPYDNIAKMIRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKTIYLAYLEKIQAD
                     LEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQLFDTIQTARENGK
                     RILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLISLK
                     AGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIF
                     DLQKKKQALVDELIQPGEQMLGKLSTEEIKQILQLDNGRDDK"
     gene            13243..13665
                     /locus_tag="IBJ56_000478"
     CDS             13243..13665
                     /locus_tag="IBJ56_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter"
                     /protein_id="HAM3416762.1"
                     /translation="MKKWEVFAVQNVEAAEEIISKLVSEGYEKEDISVLAKSKHNKNL
                     ETLAEKENIEIERPVNEEAFGIISGILQSLSGAIVIPQAYNPKYGALYAAGPFAKWFS
                     KTDDKSVKRLLEDFDLTAEQVDKMIENLHADNILIFAR"
     gene            13689..14492
                     /locus_tag="IBJ56_000479"
     CDS             13689..14492
                     /locus_tag="IBJ56_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HAM3416763.1"
                     /translation="MQIKEFLISRRSELVNMFYENYYSETDEFKLRLSSGEEEASIRA
                     LSTASCGMIIDVITGVKERDFESIGKRRFNDKTDIRKIHQHMSEVEKYIITSLVKWKE
                     TENVFYSDADIIQFMLAIKDTLSSIQQQLLEGFMQENRNQVAAQRKEIIQLSTRIIPI
                     TDSIGVLPIVGSLDDDRGYFMKEKAVESADKLNLDTIVIDFSSAVLKDDFATKHMEDM
                     IQSFKLIGLVPILSGMRPSFAQRTIQVGSNISKLESFGSLEQALTNLGV"
     gene            14647..17349
                     /gene="acnA"
                     /locus_tag="IBJ56_000480"
     CDS             14647..17349
                     /gene="acnA"
                     /locus_tag="IBJ56_000480"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HAM3416764.1"
                     /translation="MTNWKEKAKASFQLNDKTYHYYKLKTLEEDKLTNIEKLPYSVRV
                     LLESVLRQADGRVIKDSHVEDLAHWSKDGNEGEVPFKPARVILQDFTGVPAVVDLASL
                     RKAMADLGGDPEKINPEIPVDLVVDHSVQVDSYANPEALKINMELEFKRNMERYQFLN
                     WAQKAFDNYRAVPPATGIVHQVNLEYLANVVIANEVADGEFVAFPDSLVGTDSHTTMI
                     NGIGVLGWGVGGIEAEAGMLGQPSYFPIPEVIGVKLLGALPNGATATDFALKVTQVLR
                     EQKVVGKFVEFYGPGVATLPLADRATVANMAPEYGATCGFFPVDKEALNYLKLTGRDK
                     EQIELVEAYLEANDLFFTPEKVEPNYTQIVEIDLSAIEPNLAGPKRPQDLIPLSKMKE
                     TFRESITAKAGNQGFGLDKSALDKEVTVTFGNGDQSTMKTGSVAIAAITSCTNTSNPY
                     VMLSAGLVAKKAVEKGLEVPKFVKTSLAPGSKVVTGYLEKAGLLPYLEKLGFDLVGYG
                     CTTCIGNSGPLKEEIEEAIQDSDLLVSAVLSGNRNFEGRIHALVKANFLASPPLVVAY
                     ALAGTTNVDMLTEPIGRGNNGEEVFLDDIWPSSEEVKALVEETVTPELFREQYAHVFD
                     ENEAWNAIETTEDALYKWDENSTYIANPPFFDNLAKEAGKVESLSGLRVIGKFGDSVT
                     TDHISPAGAIGKDTPAGKFLQEEGVAIRDFNSYGSRRGHHDVMMRGTFANIRIKNQIA
                     PGTEGGYTTYWPTGEVMSIYDASRKYIENNTGLVILAGDDYGMGSSRDWAAKGTNLLG
                     IKTVIAKSYERIHRSNLVMMGVLPLQFQPGEDAETLGLTGSESLQVEIGEEVAPRDLV
                     KVTAVREDGSSFTFEALARFDSEVEIDYYRHGGILPMVLRGKLK"
     gene            17449..17682
                     /locus_tag="IBJ56_000481"
     CDS             17449..17682
                     /locus_tag="IBJ56_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416765.1"
                     /translation="MRYQKISFIVTGIIAAVIGYLIFTSNYHPDVPNWLLFLFLALSI
                     AVAVSQWKEKRLIWSCVGLFVAVLISVYYILTI"
     gene            17695..18276
                     /locus_tag="IBJ56_000482"
     CDS             17695..18276
                     /locus_tag="IBJ56_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HAM3416766.1"
                     /translation="MSEELRCPWSINDPFELEYHDTEWCVPSKNDTYLFEMLNLEGAQ
                     AGLSWRLILHKRKAYQEAFFHFDIDKCARLTDDELATIVEEAAIVKNRLKVKAVRTNA
                     LATQKVQAEFGSFANYIWGFTNNERIINEWQGMGEVPASTELSEKISKDLKKRGFKFV
                     GPVIVYSYLQAIGILDDHLRSCPFHTFNREATK"
     gene            18273..19247
                     /locus_tag="IBJ56_000483"
     CDS             18273..19247
                     /locus_tag="IBJ56_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HAM3416767.1"
                     /translation="MIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVKRLTDMGFKVT
                     FGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNSNQLLPYLDYELISE
                     NPKILCGFSDITALATAIYTQTELITYSGAHFSSFSMEKGLDYVMDSFSKCLLQKEPF
                     ALKESAAWSDDEWYLDQENRNFIPNEGLVVMQPGEAEGIIIGGNLCTLNLLQGTEYMP
                     NLAGTILFIEDDFMTVPETFDRDLESLLSQPGADEIEGLVIGRFQQKTAMTAEKLAYI
                     IETKTALQKIPVISGADFGHTQPIATFPIGGTARIDTNQTDKIQIIRH"
     gene            complement(19284..20351)
                     /locus_tag="IBJ56_000484"
     CDS             complement(19284..20351)
                     /locus_tag="IBJ56_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAM3416768.1"
                     /translation="MIALVKNEFTKLFSRKSSWIMQIVLFVAVLALALLMFFVSKIDT
                     SGIEGGDASNAGITAYYDDKGAPVSEEEYWNSADKDGNPTYKSETLSLTDSVAYLKTQ
                     EQAAPTKEAKETIQKQIDFYQAYVDADEKPASNSAGISSADFFASLGSSGAVATMLVV
                     VVASIIVATEFSGGTIKLLLTRPYSRSQILFSKYVMCIVYSIISSITLLVASFIFSFI
                     LPKQSIFMPLSPSTGAMTAFEHAWMLLGTNFLLMIVYATIAFFFSSVVRSQALAVGVG
                     VGVLFSGGIIRQLLPLAIEKYDWMKWIIFNLLSLNDTVGGSKIAGGLADWQIIAGLGV
                     YTAIILFFTFFLFKKRDVALS"
     gene            complement(20348..21268)
                     /locus_tag="IBJ56_000485"
     CDS             complement(20348..21268)
                     /locus_tag="IBJ56_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416769.1"
                     /translation="MTETVLKLEHVTKKIGQKNIVHDISFDIHKGEVFGLLGPNGAGK
                     TTIIRSIVGLIRRSEGTVFINGKNVDTEYKAAISEVGAIIENPEFYMYMSGWANLKQF
                     ARMSQKNITDEHVREIVELVKLTGAINQKVKTYSLGMRQRLGVAQALIHSPALLILDE
                     PTNGLDPQGMAEFRTLIRDLATNGTSVLISSHLLSEIQQITDRFAIINKGVLTHIEKM
                     SDLIENHVAAYKLKVSDPEATKTVLATLPVKLVAQNEDLFKIEVAHEDVHLIARALIQ
                     ANIDLLEMVPLQASLEERFLELTKGGGAEV"
     gene            complement(21352..21780)
                     /locus_tag="IBJ56_000486"
     CDS             complement(21352..21780)
                     /locus_tag="IBJ56_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HAM3416770.1"
                     /translation="MIQATVPYFTFDGEATEALDFYKKVFQAEITQMRYFHELEGFSG
                     DKKQGERILHARLTKDEKDLFYFSDTLEGETDAGNRLALAVNFSSEADFVHAFVLLSK
                     TGTIEIPIQNTFWDAKYAKVIDHYSIDWHLNLENESTTKV"
     gene            complement(21903..24503)
                     /gene="adhE"
                     /locus_tag="IBJ56_000487"
                     /gene_synonym="adhC"
     CDS             complement(21903..24503)
                     /gene="adhE"
                     /locus_tag="IBJ56_000487"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HAM3416771.1"
                     /translation="MAIKENAAQEVLEVQKVIDRLADNGQKALKAFESYNQEQVDNIV
                     HAMALAGLDQHMPLAKLAVEETGRGLYEDKCIKNIFATEYIWNNIKNNKTVGVINEDV
                     QTGVIEIAEPVGVVAGVTPVTNPTSTTLFKAIIAIKTRNPIIFAFHPSAQRCSSAAAK
                     VVYDAAIAAGAPEHCIQWVEKPSLEATKQLMNHDKVALVLATGGAGMVKSAYSTGKPA
                     LGVGPGNVPAYIDKTAKIKRSVNDIILSKSFDQGMICASEQAVIVDKEVAKEVKAEME
                     ANKCYFVKGAEFKKLESYVINPEKGTLNPDVVGKSPAWIANQAGFKVPEDTKILVAEI
                     KGVGDKYPLSHEKLSPVLAFIEAANQAEAFDRCEEMLVYGGLGHSAVIHSTDKEVQKA
                     FGIRMKACRIIVNAPSAQGGIGDIYNGFIPSLTLGCGSYGKNSVSQNVSATNLLNVKR
                     IADRRNNMQWFKLPPKIFFEKYSTQYLQKMEGVERVFIVTDPGMVQFKYVDVVIEHLK
                     KRGNDVAYQVFADVEPDPSDVTVYKGAELMKDFKPDTIIALGGGSAMDAAKGMWLFYE
                     HPEASFFGLKQKFLDIRKRTFKYPKLGGKAKFVAIPTTSGTGSEVTPFAVITDKENNI
                     KYPLADYELTPDVAIVDAQYVTTVPAHITADTGMDVLTHAIESYVSVMASDYTRGLSI
                     RAIELVFENLRESVLTGDPDAREKMHNASALAGMAFANAFLGINHSLAHKIGPEFHIP
                     HGRANAILMPHVIRYNALKPKKHALFPRYESFRADEDYARISRIIGFPAATTEEGVKS
                     LVDEIIKLGKDVGIDMSLKGQNVAKKDLDAVVDTLADRAFMDQCTTANPKQPLVSELK
                     EIYLEAYKGV"
BASE COUNT         8019 a         4334 c         5243 g         7202 t
ORIGIN      
        1 tttatttcac cggatcattt cacgaacaag ggaactctcc tttaatttgg ttttatttta
       61 tacaaagtgg tgacaaataa atatattttt tcgggtaata atgggcagaa ataggtccat
      121 tatttttatt tgtccaattt taaggagaaa agggagggat tgttgtttga aaatttataa
      181 agcattgggt tggtttttta aagaaaattg gaaatcttat gcatttggag taaccatttt
      241 gtttacgatt gcgcttttac agttagttcc gccgcaaatt attggctata cggttgatgc
      301 cgtaacgaac gactcactga caaaagacaa attgattaaa tggatgatta ttctagttgt
      361 agcagcgatt cttgcatacg gtggtcgcta tgtttggcgg atgttaattt ttggttctga
      421 taataaatta caacgcactt tacgtttacg attatttgaa cattttacca agatgtcgcc
      481 atttttcttt caacgttatc gtactgggga tttaatggcc catgcgacga atgatattac
      541 agctattcaa caagttgcgg ggattggcgt tttgacccta tcagattctg ttctaacagg
      601 gggaacggtt attgcgacaa tggcaataac gattgattgg cgcctaacct tgattgcatt
      661 acttccaatg ccgtttatgg tactcggaag ttcgatttta ggtaaaaagt tgcacgaccg
      721 tttccacgga gcacaagccg ctttttcaat gttgaatgat aaaacgcaag agagtatttc
      781 tggcattaaa gtaacacgga catttggaca agagaaagaa gatattcaag attttgcaaa
      841 acaaaccaaa gaagtcgttc aaaaaaatat ttctgtcgct aaagtggatg cgatgtttga
      901 tccgatgatt tccattattg tggggatttc atttgttctt tcactaggat ttggcgcgaa
      961 attcgttgtg gatggagagt tgactattgg acaagtgatt gctttttcga actacttatt
     1021 cttattaatt tggccgatgt tagcatttgg atttttgtac aatattattc aacgcgggaa
     1081 tgcttcttat gatcgtgtgc aacatttact cgccgaaaaa gaagatgtac ttgaccagga
     1141 gggcgcacta gatacggttc cagttgggga cttacaagtt gcaatggaca aatttaccta
     1201 tcctgatgag agtgaaccag tcttgtcaga tattcatttt gaattaaaag ctggggaaac
     1261 actgggtatt gttggtcgaa ctggttctgg gaaaacatcc ttattaaagc ttttaatgcg
     1321 agaatatgat acgtatgaag gtaagattgc ttttgctaac gtgaaaattc aagactatac
     1381 ggttcgagct ttacgagaag caattggcta tgtgccgcaa gatcagtttt tattctccac
     1441 aacggtacga gataatattc gttttggaaa accagatgca ccgcaagaag aagtgacgaa
     1501 gattgcaaag cttgtggctg tagatgaaga tattcttggt tttgaaaatg gctatgatac
     1561 gattgtcggc gagcgcgggg tttcactctc tggtggtcag aagcagcgtc ttgctatcgc
     1621 acgagcgcta attatgaatc ctgaattgct tattttagat gatgcacttt cggcagtaga
     1681 tgcgaaaaca gaagaacaaa ttttagctaa tttaaaagag aatcgttcgg ataaaacgac
     1741 aatcattagc gcacacagac ttagctctgt cgaacatgcg aatctaatta tcgtgattga
     1801 taaagggcag atcgtggaac gtggaacgca taaggaacta atggctttag atggctggta
     1861 tgcagaaatg ttccacgagc aacaactgga agaagcacta gaagaagggg gtgcagcaga
     1921 tggaagcgat gaatgaacaa gatgaaatgt tagtgatgtc cggtaaagaa catcgcgagg
     1981 ttttaaaaag aatgcttagt tataccaaat atcatattcc gagtttgatt tggacaggtg
     2041 tgcttgttct tctcgtaacg cttgcggatg tctttgcacc aatcttgatt aagatatttt
     2101 tggatgatta tttaacaccg atgaatttgg aaatgcaggc tttgctaatt cttggtgcgg
     2161 gatatttggg acttacgatt gggaaatcag ttgtttggta tttccaactg ctgttcttcc
     2221 aaaaaatcgc gcttgaaatt gtgcaacaaa tgcggattga tatttttaca aaacttcatt
     2281 cgctaggtat gcgttatttt gacaaaacgc ctgcaggaag cattgtgtcg cgcgtgacaa
     2341 atgataccga agcggtgaaa gatatgttta ttaatgtgct ttcaacagcg atccaaagtt
     2401 tgtttatgct tgtagggatt tatgcggcga tgtttgcgct caatgttcaa ttagcgttat
     2461 atagtttgct gttattccca cttattgtct ttattatttt tgtttaccgg aaatacagtt
     2521 cgcagtttta ccgggcgaga cgagaaaaat taagtcaatt aaatgcaaaa attgctgagt
     2581 cgatttcagg aatgtcgata gttcaacaat ttaatcaaga gcgtcgttta gtaaaagaat
     2641 ttgagaaaat caataaagat tactatgacg tcggaatgaa aaatatcaaa tttaatgcgc
     2701 tattacttgg accggcgatt gatttgattt acgcgttggc tgtagtgatt attcttagtt
     2761 tctttggtgc agagtcatta ataggaccgg tagcgattgg tacaatttat gcctttatta
     2821 gttactttga tcgtttttta gaagcgattt ataatgtaat ggaacggcta gcaatgtatc
     2881 aagaggcgat tacggcggct tcccgagtat ttcgtattat ggatgaaaca gaagaagtgc
     2941 cagcccaatt gaacgatcca gaggcaaaaa tcacacgcgc taaaattgag tttaaagatg
     3001 tttcgtttgc ttatgaaggt gggcgtgacg ttcttaaaaa tattagcttt acggctgaac
     3061 caggacaaac ggtggcgctt gttggccata ctgggagcgg gaaaagttcc attatcaatt
     3121 taatgatgcg tttttatgaa tttgaacgtg gcgatatttt aattgatggt aagtcgatta
     3181 agtctcacga aattacagaa ctgcgtaaga aaactggact agttttgcaa gatagtttta
     3241 tgttttatgg ggatattaat acaaatattc gcctctacga taaaagcatt acagatgaac
     3301 aaattgtgga tgctgcgaaa tttgttcaag cggatggctt tattcaaaca ttatccgatg
     3361 agtacaacca taaagtgatt gagcgagggg cttcgttttc aagtgggcaa agacagctga
     3421 tttcatttgc cagaacggtt gtgacgaatc cgcaaattct cgttttagac gaagcgacag
     3481 cgaatattga tactgaaaca gaaagcttaa ttcaaactgg gttaaaacga atgagagaag
     3541 gacgtacgac gattgcgatt gcgcatcgac tttcgacaat taaggatgcc gatttaattt
     3601 tagttttatc taaaggacga attattgaac gtggtacaca tgatacacta atcgcagaag
     3661 aaggagtgta ccattccatg tatcaattac aaaatagcgg aatggattta gacgaagcac
     3721 tttaagcaga gaagtttatt tcaaacggta aaaggaatat aatgaggagc gaagtgttac
     3781 agcagattag tagggggaat taaaagtgtc attaatcatt tcaattatca ttacacttgt
     3841 ttttggagct ggaattatca tgataagaat gaaagcatcg aagcgtccag caagtgtgaa
     3901 agggattatc ataccaccaa ttatgatgtc aacaggcgct ctcatgtttg ttattccttt
     3961 tttccgtgtt tcgtgggtag atattttaga agctatagca atggggcttg tgttttctgt
     4021 tattttaatt tggacaacaa aattcgaaat tcgtcataag tacgtattta ttaaacgtac
     4081 aaaagctttt ccagttattt tgatgggact gttactcatt cgaatcttca tcaagtactg
     4141 gattagtggt agtctggaag tgggagagtt gtctggaatg ttctggataa tggcgtttgc
     4201 gatgattgta ccttggcgaa ttgtgatgta tttccaatat aaaaatactg aaaaagagct
     4261 taataaagta gaagttagtg gagagtacga ataatagtga aagcattttc taaaacagct
     4321 tgaattattc cgtatgaata gcttataatg aataatgtta catcgtgagt aatgttactt
     4381 gccggatggg tgaagcatat ccgagactga cgcggccagt tacaaaaggg cttccgagtt
     4441 tggcttgaaa aaaaggagga catcatcttg aaaaaatggt tattagtagt tttaacttta
     4501 gcactaggat tgtcgcttgc ggcttgttcc ggttctaaca gttctgacaa aaaagaagac
     4561 acaaaaaaag aaacaacaag tgataaagac aaagtactaa attattacat ggacttagta
     4621 gacgttgtta atgaaaacaa tggcgattac aacgcttatg taggagcagt tggcgcagat
     4681 cctaaaccat ctgaagcaga ccttgcagct cttgcgaaac cagctagtga atcagcactt
     4741 aaagtatctg aagcacttgc tagtgaaaaa acaccagacc ttggtaaatc cacagatgat
     4801 ttcaaagcag ctgtgaaaca attaagtgat gcttacaaat tagaagcaga cgcacttaaa
     4861 gctagtggtc gtgatacaac aaaagcagac gaagcgatgg caaaagcgga cgaagcaatt
     4921 gctggcgtat taaaagatgc tggacttaat ccttcaagca ttacaactga tacagcttcc
     4981 tgataataaa aaagacagtt tcctaatgga agctgtcttt tttattattt attttttgtt
     5041 tgattaattt cattttgaag ttgttcaaaa gtcgccatta attcttgaga tttaacttct
     5101 agtagctctt tttggtcaag ttcggtatca ttgaataata ccggatcgcc aaaacgaata
     5161 atgatttttt tgcgttttaa aatttctcca aatgtttttg gcccatcata aacggcaggt
     5221 agcattggaa cttttgcttt atgagcgata gttactgcac cgcgttttaa atgaaggttg
     5281 gtcgtttttc tagttccact cgggaaaatc ccaactactt taccggattt taacatccgg
     5341 attggggctt taatggcgct tggtccgggg ttatcgcgat tgactggaaa ggcgttaagg
     5401 tgcgtcatga gccagttaag gaatttacct ttgaaaagct cttgtttcgc catataatgt
     5461 accggtgttg gcgatagggc gaaaccgagg tataagattt caatccatga cgtatgcgtg
     5521 gacacaacaa cgtatggtgc ttcaatgatt ttgtctttgt tttgtacttg aaatcgtcca
     5581 ccaataataa ttaaaataaa atgaacgagg ttttttgcga aatgataaaa caacttcttc
     5641 actcccagta ttgctagtta tttttttaaa ctatatctag tatacttaaa attgacgagt
     5701 tttgcattaa aaataaataa tctctgagaa aaagaaatga ggtaaccgat gaaattttta
     5761 catacagctg atttgcattt aggaaaaatt gtatctggcg tatcgatgct agcagagcaa
     5821 gaatatattt tggcacaaat aacgaagatt gccgaggaag aacaagtcga cgcacttatt
     5881 ttagcaggag atttatatga ccgcgccgtg ccgcctgcgg atgcggtgaa agtgctaaat
     5941 gatattttag tgaaatggaa tgtagaacta ggtattccga tatttgccat tagcgggaat
     6001 catgacagtg cggagcggct tgcttttgga agtcagtggt atgaaagtag caagttgtat
     6061 atgaaaggaa aatgtacctc gcagtttgaa gcgatttctt ttatggatgc cgaagtgtgg
     6121 cttgtaccat atcacgaacc agcaattatt cgggaagctt ttgcagataa ttcgattcgc
     6181 agttttgagg acgctatgca agccgtgacg aaacaaattc ggtccaaatg ggatacaagc
     6241 aaggcgcaga ttttggttgg acatgcgttc gtttctggcg gtattccgag tgattccgaa
     6301 cgacaactag caattggaaa tgtggaccgt gtttctacgg attgttttga tggttttaca
     6361 tatactgcac tcgggcactt gcaccatccg catgcgattc ggcacccgtc tatcttttat
     6421 agtggatctc ctttaaagta ttcattttca gaagcaaatg atcacaaaag cgtgcggatt
     6481 gtggaactgg aaggaaaaga actggttagc gtgacggagc gctttctaac accaaaacat
     6541 gatatgcgca ttatttctgg aacgctagcg gaactgacag aaaatttagt ggaaaatcct
     6601 gatgactttt ttcaagtgaa tttaatggat gaaggtgctt taattgatcc gatggggaaa
     6661 ttgcgccaat tttatccaaa tattttacat ttagaacgta aaaagcaaac attaaaagaa
     6721 acgcaagata actttgaaga aatcatgaaa aaagatgatt tagagctatt tggtcaattt
     6781 tttgaacatg ttaatgggac agaattaacg gaaacacaaa aacaaaagtt agcggatgtt
     6841 tttgaacaag cgaggaaggg ggatgcggaa tgagaccgat taaattaacg atgcaagctt
     6901 ttggagccta tgccaaaaaa gaagtcattg attttgaaaa gcttggaacg gagcaaattt
     6961 ttgtgatttc tggtaaaaca ggagctggga aatcgacaat ttttgatgcg attagttttg
     7021 caatttttgg gaaagcgaac acatttgata gggaaagttt ttcgatgcga agtcattttg
     7081 cgacggataa agaaataacg gaagtaacgc tagcttttag attgaaggac aagatttacc
     7141 aaattaaccg cattcctcag caggaaattg ccaaacaacg cggaaacgga acaaccactt
     7201 cgccgcaaaa agcagaatta tatgagttga ttggtgacga aatgaagttg cttgcaagtt
     7261 ccgtgcgcga tgttaatgca aaaatggaag aattaattca acttaatgtg gatcagttta
     7321 gacaaatttt gatgattcct caaggcgaat ttagagaact gctcgtatcg gatagtaaag
     7381 aaaaagaagt catattgcaa cggttagcgc atactgctta ctatgaaaaa gtggaaaatt
     7441 tgttatggga aaagcagaag caagccgaaa tcttggttgt agaagcacgt aaaaaagtag
     7501 cggaacttgc tgaacttagt ttaccggatg gggaagtttc tggaaagaca acgagtgaaa
     7561 tcagcgtgtt gcaaaacgag gccattcaaa aagaacaagc aattttaacg gaattagaaa
     7621 ataaattaag tattattcgg aaacaaacaa gtgaagctgt cgaaaaagtg acgcttgcga
     7681 aagaacaact gcttgattgg caaaatttgg ataagtatac agaagaagtt gcgacactag
     7741 aagcggagaa agatttttat caaacaatgg aagttcgtat ggaggctgcg aaaagagcaa
     7801 gcaaccttca atcccaagat gcactttgta ttcgtttaaa agaacaatta gaaacagccg
     7861 aacaaacaga aaaacaagta gcacttgagg cagaacaggt aaaagcccaa ttttcacatg
     7921 cgaaaaaaca aaaagaagct cttgccgaaa aagaagcaga attagaaata aacaaacgaa
     7981 cacttttcca attagaagaa atggaaccga aaatattgga attagaaaca gtcttgatcc
     8041 aaaaaagacg cgccgaatta gactggaaaa aaacaacgac ccttttagaa aaaataatcg
     8101 acaaggaaca aaaaatagcc acagaactgc aatcagttga ggcgcgatta gcggaaataa
     8161 acaaagccga gctcatgtat ttagaagtta ttaacaaacg gacaacatta gaagccagga
     8221 tagagaaaga acaagaattg gttaataaaa ggataaaaat ggaggagtgg gatgcagcaa
     8281 aacaaactga agaacaaaca ttagcacaac ttttaataga aaaagcggaa atggaaagaa
     8341 cgattaaaca ggaagaaaca aaactagaaa aagaacaagc ggcgacaatc gcagcgcatt
     8401 tgcatgaagg agatgcttgt cctgtctgtg gttcacagtc acacccagta ctcgcaaaat
     8461 ttggagaaac agctgacctt gaaacactcg aaatagcaaa agcaaagcta caagaaaaac
     8521 aattagtgct tactacgacg gaaaaagcta tcagtcaact cgaatggcaa cttaatgaat
     8581 gggcagatat gaaagagcaa agtttagccg aaatacaaca aactttagct gaaaatatcc
     8641 aactagctac taatctgaga gagcaaataa cccagttgca atccgaagta gctcaaaaag
     8701 aaactgtcca agcgacatta gaatcattga aaaacagaca aaatgaaacg ctaaccgaaa
     8761 aaaataagat ggctctcgaa gtagaaaagt tgcatcaaca agtgcaacta acggaaggga
     8821 aacgaactta tttggaacaa tccattcccg acgagttgcg agataaggct gttttcgata
     8881 acaaaatgaa agaactaagc tcaaaaatcg aaacacatat caaacaagcc gaacagattg
     8941 atgcgttgtt tagacaggca gaaaaagaaa caaccagact agaatccacg ttacattcag
     9001 cgcaaaaaac aacggtggat gcgaaagaag ccttacaagt acagcgcgaa attttcaaag
     9061 aagccatgaa acaaaatgat tttttatcct atgatgcgta taaacaagct ttgttatcag
     9121 tagaagaact aaaaaactta gaagaaaaac tggccgaata cgagcgaaaa cgccatttag
     9181 ctgtatcacg ccaagctgat ttaaaagaaa aactccaaaa caaacaaaaa ccaaatatgg
     9241 aacaactaga attcattatg aaagagaaac aactcgaact tagccaatca gaagaaaata
     9301 caatgaaaca acgcgaattc gttgcaaaaa gaaaagaact tgtcgaaaac taccaaaaca
     9361 gtattcaggc agtggaacaa gccgaagaaa attatgcgga tattggctta ctagctgatg
     9421 cagcgcgtgg taaaaatgcc cggagattaa cgtttgaacg atatatttta gcgatgtttt
     9481 tagacacgat tattcaccgc gccaaccacc gtttatccaa aatgacaagc ggtcgttttg
     9541 aactacagcg gaaaatggaa aaagcaaaag gaaatgtcca aagtggctta gaacttgaag
     9601 tttttgatga gtatacagga ttaactcgac atgtaaaaac actttcggga ggagaaagct
     9661 tcaaaacttc tttagcgctt gcattatcac tcgcagaagt cgttcaagaa atggcaggtg
     9721 ggatttcact tgaaacgatg tttattgatg aaggattcgg tacgcttgat cctgaatcac
     9781 ttgaagccgc tgtagaatgc ttactggaaa cacaagaaaa tggccgctta gttgggatta
     9841 tttcccatgt accagaacta aaagaacgaa tttccgcaag gctagaagta accgcaacaa
     9901 atcacggaag taccactaaa tttattactg caagtagcta aaagaccgca tgcgttgccg
     9961 tccctcgtct tttcctatat aatagtagtt tagagtaatg gacggttttg ggaggaagaa
    10021 agtaatggag cactttacag caattcaaaa taaaatgatc ccatatagtg tgaagcaggc
    10081 tggaaagaaa ctgatggaag acggagaaat cattcagttt cgtgaaaaag atgcatcaga
    10141 ccatttttca acgtatttta ttgatcaaaa tgtcgtagaa gatgcaggta atgaaaatta
    10201 tgcgtgtagt tgtgccgatt ttcaattgaa cgcgatttgc aaacacatct acgcaaccca
    10261 tctgaaaatg gaaaaagaaa agcaaaaagc agccaaacaa gattttaaaa atcgaattct
    10321 cacgcaagaa tcaaatacac ttctttccct ttttcaacaa aatatggcgc aacagctcga
    10381 agtagaagag gacaatacga ataaaacgcc actccaaacg cagtatatca ttcgtttaaa
    10441 acccgatgat tctagttata tcatgactat tgaagtcaaa gttggcacag aacggaccta
    10501 tgttgtaaaa aatatgaata catttttagc cgcaattcgc gacaggcagt ggcttgtttt
    10561 cactaagaat tttgcttacg atccaaacga gcatttcttt cttgaggaag acaaacaaat
    10621 tttggataaa ctactgcaaa tcagtgaaat tgccaaaatg tatgatacag attcttttta
    10681 ttggtccaaa tcttacgcag aagagaaaaa cctaacgatt ccaccgagta tggcgagcga
    10741 cctgttagaa ctactcacag aacgcgatac gacgtgcatt attatgaaag aacgcgtaga
    10801 agatattaaa tatcgcggta tcaatgtgcg ccacgacaac cttgatttca tttttgaact
    10861 caaaaaaagt gcagaagata aataccaact agaaatggaa gacttacaac aagcaatctt
    10921 ttttgaagcc taccaacttc ttttctttga cggtaccttt ttcataccgg caaaagaagt
    10981 gtgggaatct ttaaaaccat taatggaatt tcataaagtt acaaaaaatg aagtggtaca
    11041 attttcagag tcgcaattaa gtgaagtcat ttcctacgta ttaccagcct tacagaaaag
    11101 cggaaagtta aaactggatg actcgattga agaccggatt acgcaacagc cgcttgattg
    11161 taaattattt attgccctcg aatacgggga gcacacgttg cgcctggaat accattatgg
    11221 caatcagctt ttcgatccat ttgcaacatc agaagaagaa aacgaaaaaa tcatgatacg
    11281 tgatgtcgaa aaagaagccc gtgtgatgaa tattatcgaa agcgcccctg ttcatttttc
    11341 tggaacaaaa atggtcgtca ataaacaaga aaaggatttg tatcaatttt attatcgcac
    11401 cattccaaaa ctagcagagt acgcagagat ttatatggaa gacggtctcg aagaaatggt
    11461 agaagagaat gtgcgcccag ttacgacact ggatgtttct ggtgataacg attatctttc
    11521 tgtttcgttt gatttcaaag gtattccgga agaagaagtg caaaatgtcc tagaatcttt
    11581 gcgtgaaaaa cgtagctatc atcgtctgaa aagtggtcgt ttcttatcgc ttgaatcaga
    11641 aaactacaaa caaatggaag atgtactcca aatgttagaa gtgcgtaaga aagatgtcca
    11701 agcaaacatg caagtaccgc tttatcgtgg gatgcaaatt tatgatattt taggagcagg
    11761 agcacaagat gaacatcata aattcagtcg ttctttccgc gaattgctta cagatattac
    11821 gacgcaatcc gaagacagct ttgcgttacc aaaaggatta aaagcagagt tgcgcgatta
    11881 tcaactaact ggtttcgaat ggatgaaatc acttgcgaag tataatcttg gtggtatttt
    11941 agcagatgat atggggcttg gtaaaacggt gcaaacgatt agttttctag catctgagtt
    12001 agaagataat cctaacttaa aaccagtctt aattattacg ccagcatcac tactttataa
    12061 ctggcaaagc gaattagaaa aatttgcgcc agctattcca gtgaccgttt tacatggaac
    12121 gaaacaatcc cggatagccg aaatggaaga aatgaagcat ggccatgtct acttgatttc
    12181 gtatccatcg ttacgccaag atattgtcca ttttgcagat gtcgcttttt caagtgttat
    12241 tattgacgaa tcacaagcta tcaagaatta tcatacgaag gcctctcaag ctgtgcgcgc
    12301 tttgaaacgc aatcatgtat tcgcgctcag tggaacgccg cttgaaaaca gcatcgatga
    12361 actatgggct attttccaaa cattaatgcc aggatttttc ccttcattgc gcaaatttaa
    12421 agaaatacct tacgacaaca ttgctaaaat gattcgtcca ttcttactac gtcgactaaa
    12481 acaagatgtc gtcaaagaac taccagataa aattgaaacc aacctttatt ctgaattaac
    12541 cgatgagcaa aaaacaatat acttagctta tttagaaaaa attcaagctg atttagaagc
    12601 aagcaatggt aatgcttccg aagaacgaat caaattactc gcaggattaa cccgtttacg
    12661 ccaaatttgc tgtgatccga gcctttttgt ggaaaattat caaggtgaat ctggtaaatt
    12721 actacagtta tttgatacaa tacaaacagc aagagaaaac ggtaaacgca ttctcctatt
    12781 ttcccaattc acgggtatgc ttggaattat tcgccaaaaa ctagaagaag atggacaaac
    12841 acttttctac atggatggta aaactccatc gaaaacaaga ctagatatgg ttaatgcttt
    12901 taacgaaggg gagaatgata ttttcttgat ttccttaaaa gctggtggaa ccgggctcaa
    12961 tcttgttggc gcggataccg tgattttata cgatttatgg tggaatccgg ctgtagaaga
    13021 acaagctacc ggacgtgcac atcgaatcgg gcaaaaacgc gttgtccaag tgttccggat
    13081 gatcactaaa ggaacgatag aagaacgaat ttttgatttg caaaagaaaa aacaagcgct
    13141 agtggacgaa ctaatccaac caggcgaaca aatgctaggc aaattaagta ccgaagaaat
    13201 taaacaaatt ttacaattgg ataatggaag ggatgacaaa taatgaaaaa gtgggaagta
    13261 ttcgcagttc aaaatgttga ggcagcagag gaaatcatca gcaaattagt aagtgagggc
    13321 tatgaaaaag aagatatttc tgttctagcc aaatcaaaac acaacaagaa cctagaaact
    13381 ttagcagaaa aagaaaatat cgaaatcgaa cgtcccgtaa atgaagaggc tttcggtatt
    13441 atttctggaa tcctccaatc tctaagtgga gccattgtta ttccacaagc ttacaatccc
    13501 aaatacggtg ctttgtatgc tgccggtccc tttgccaaat ggttctcgaa aacagacgat
    13561 aaatctgtaa aaagattatt agaagacttt gatttaacag cggaacaagt ggataaaatg
    13621 attgaaaatt tacatgcaga taacatctta atttttgcaa gataatatcg gtgaaaaagg
    13681 agaagtttat gcaaattaag gaatttttga ttagtcgtcg ttcagagtta gtgaatatgt
    13741 tttatgaaaa ttattatagt gaaacagatg aatttaaatt aagacttagt agcggggaag
    13801 aggaagcctc cattcgtgcg ctgagtaccg catcatgtgg gatgattatt gatgtaataa
    13861 ctggtgtgaa ggaacgcgac tttgaaagta tcggtaagag acgtttcaat gataaaaccg
    13921 atattagaaa aatccatcaa catatgagtg aagtcgaaaa atatatcatc actagcttag
    13981 tcaaatggaa ggaaacagaa aatgttttct attcagatgc tgacattatc caatttatgc
    14041 ttgccataaa agatacactt tcgtcgattc agcaacagtt attagaagga tttatgcaag
    14101 aaaatagaaa tcaagtcgca gcacagcgaa aagaaataat tcagttatcc acacgaatta
    14161 ttcctatcac tgattctatc ggcgtcttac caattgttgg tagtttggat gacgataggg
    14221 gctatttcat gaaagaaaaa gcagtagaat ctgcggataa gctgaattta gatacgattg
    14281 tcattgattt ttccagtgct gtattaaaag atgatttcgc aaccaaacat atggaggata
    14341 tgattcaatc ttttaaatta attggcttag taccaatact ttctggtatg cgcccaagtt
    14401 tcgctcaacg cacaatccaa gttggttcaa atatttccaa actcgaatca tttggctctt
    14461 tagaacaagc attaaccaat ttaggtgttt aaagtacaga tgaatggcac tcgttgtcat
    14521 tcattttttt gttataagaa aaagttatcg aattatagcg gattctcttt gtttacttat
    14581 cgcccgtttt taagtacaat agatgagaga gaccaatcgt ttcaagaatt gaaggaggaa
    14641 acgtggatga ctaattggaa agaaaaagca aaagcatcat ttcaactaaa cgacaaaacg
    14701 tatcattatt acaaacttaa aaccttagaa gaggacaagc ttacaaacat cgagaaatta
    14761 ccttattctg tacgtgtttt acttgaatcc gttttaagac aagcagatgg cagagtaatt
    14821 aaggactcac atgtagaaga tttagcccat tggtctaaag atggaaacga aggcgaagta
    14881 ccattcaaac cagcccgtgt tattttacaa gatttcacag gtgttcctgc agtggttgat
    14941 ttagcttctt tacgtaaagc catggcagat cttggcggcg accctgaaaa aatcaatccg
    15001 gaaatcccgg tcgatttagt cgtcgatcac tcggtgcaag tagacagcta tgcgaatcca
    15061 gaagcactga aaatcaatat ggaactcgaa ttcaagcgca acatggaacg ttaccagttt
    15121 ttaaattggg cgcaaaaagc atttgataac tatcgcgcag taccacctgc aacaggtatc
    15181 gttcaccaag ttaacttaga gtatttagca aacgtcgtta ttgcgaatga agtagcagac
    15241 ggcgaatttg tagcgtttcc agattccctt gtcggaacag atagccatac gacgatgatt
    15301 aacggtattg gtgtattagg ttggggcgtg ggcggtattg aagcagaagc cggcatgctc
    15361 ggtcaaccat cttacttccc aattccagaa gttatcggtg tgaaattgct aggtgcttta
    15421 ccaaacggcg caacagcaac tgattttgct ttaaaagtaa cccaagtctt acgggaacaa
    15481 aaagtagtag gtaaatttgt tgaattttat ggtccgggtg ttgcgacact tccgcttgct
    15541 gaccgtgcaa ccgttgcgaa tatggctcca gaatacggtg caacttgtgg gttcttccca
    15601 gtagataaag aagcccttaa ttatttaaaa ctaactggtc gtgacaaaga acaaattgag
    15661 ctagtagaag cttatttaga agcaaacgat ttattcttca cacctgaaaa agtagaacca
    15721 aactacacgc aaatcgtgga aatcgatctt tccgcgattg aaccaaactt ggcggggcca
    15781 aaacgtcccc aagatttgat ccctctttcg aaaatgaaag aaacattccg ggaatcgatt
    15841 actgccaaag caggcaacca aggtttcgga ctagataaat cagccttaga caaagaagta
    15901 accgttactt ttggcaatgg cgatcaatcc actatgaaaa ctggttcggt tgcaatcgcg
    15961 gcgattacaa gttgtacgaa cacttctaac ccatatgtta tgttaagcgc tggtttagtt
    16021 gctaaaaaag cagtcgaaaa aggcttagaa gtaccaaaat tcgtaaaaac atccttggcg
    16081 ccaggctcta aagttgtaac aggttacttg gaaaaagccg gcttacttcc atatttagaa
    16141 aaacttgggt ttgaccttgt tggctatggt tgtacgacgt gtatcggtaa ttctggtccg
    16201 ttaaaagaag aaattgaaga agcaatacaa gacagtgatt tgcttgtttc tgcggtatta
    16261 agtggtaacc gtaactttga agggcgtatt catgcacttg tgaaagcaaa cttcctagct
    16321 tcaccaccac tagtcgttgc ctatgcgctc gctgggacaa caaatgtcga catgctaaca
    16381 gaaccaattg gacgcggtaa taatggcgaa gaagtcttct tagacgatat ttggccaagt
    16441 tcagaagaag tgaaggcatt agtagaagaa acggtaacac cagaactttt ccgtgaacaa
    16501 tatgctcatg tatttgatga aaacgaagct tggaatgcga ttgagacaac agaagatgcc
    16561 ctatacaaat gggatgaaaa ctctacgtat attgcgaacc caccattctt tgataattta
    16621 gcgaaagaag ctggcaaagt agaaagctta tctggcctcc gcgttattgg taaatttggt
    16681 gattctgtta caaccgatca tatttcacca gccggagcaa tcggcaaaga taccccagct
    16741 gggaaattcc ttcaagaaga aggcgtggca attcgtgatt tcaactcata cggttctcgt
    16801 cgcggtcatc atgatgtgat gatgcgcggg acatttgcga atattcgtat taaaaatcaa
    16861 atcgcaccag gtacagaagg tggctatacg acttactggc caactggcga agtgatgtca
    16921 atttatgatg cttctagaaa atatatcgaa aataatactg gtttagtcat tcttgctggt
    16981 gacgattatg gaatgggatc ctctcgtgac tgggctgcca aaggaacgaa cttgctagga
    17041 attaaaacag ttatcgcgaa aagctatgaa cggattcatc gttctaacct tgttatgatg
    17101 ggtgttttac cacttcagtt ccaaccaggt gaagacgcag aaacgcttgg tttaacaggt
    17161 tcagaaagct tgcaagtgga aatcggtgaa gaggtagcgc caagagacct tgtaaaagta
    17221 accgctgttc gtgaagacgg ctcaagcttc acttttgaag cacttgcacg ttttgactct
    17281 gaagtagaaa ttgactatta ccgtcacggc ggaattttac caatggttct tcgtggcaaa
    17341 ttgaaataac tttaaaaaga ggcgagcaat aaagttcgtc tcttttttat ttttgcttgc
    17401 aaaaacagaa cgtatgtttt attattggtt aataggaggc ttgagcgaat gaggtatcag
    17461 aaaatcagtt ttatagtgac tggaataatt gcagcagtaa tagggtatct tatttttacg
    17521 agcaactatc accccgacgt tccaaactgg ctactctttt tatttttagc attaagcatt
    17581 gctgtggcag ttagtcagtg gaaagagaaa cgactaattt ggagttgcgt cggactattt
    17641 gtggctgttt tgatcagtgt gtattacatt ttaactatat aggaggaact cgctttgtct
    17701 gaagaattac gttgcccttg gtcgattaat gacccgtttg aactagaata tcatgataca
    17761 gaatggtgtg ttccgagtaa aaacgacaca tatttatttg aaatgctcaa tttagaggga
    17821 gcacaagctg gactctcatg gagattaatt ttacataaaa gaaaagccta tcaagaagct
    17881 ttttttcact ttgatattga taaatgtgca cgcctaacag acgatgagct ggcgacgatt
    17941 gtcgaagaag cggctattgt aaagaatcgc cttaaagtga aagcagttcg tacaaatgcc
    18001 ctagctacgc aaaaagtcca agctgaattc ggctcatttg caaactatat ttggggtttt
    18061 acgaataatg agcgtattat taatgaatgg caaggcatgg gagaggtccc tgcaagcaca
    18121 gaactatcag aaaaaatcag taaagattta aagaaacgtg gttttaagtt tgttggccct
    18181 gtaattgtgt attcttattt acaagctatt gggattttgg atgaccattt acgttcatgc
    18241 ccatttcata catttaatag ggaggcgacg aaatgattcc agcgaaatta aaacaagggg
    18301 atgaaattcg gattattgca ccaagtcgtt ctatcggtat tatggctgac aatcaagtgg
    18361 aaattgccgt taagcgccta acggacatgg gttttaaagt cacttttggc gaacatgtag
    18421 cagaaatgga ttgcatgatg agttcaagca ttcgttcgcg agttgctgat atccatgaag
    18481 cctttaatga ttcgagtgtc aaagcgattt tgacggttat tggtggtttt aatagcaatc
    18541 aattgttgcc atatttggat tatgagttaa tttcggaaaa tcctaaaatt ttatgtggtt
    18601 tctccgatat cacggcatta gcaaccgcta tttatacgca aacggaactt atcacttatt
    18661 caggcgctca tttttcaagt ttttcaatgg agaaagggct ggactacgta atggactcat
    18721 ttagcaagtg tttattgcaa aaagagccgt ttgcgcttaa agaaagtgct gcatggagtg
    18781 acgatgaatg gtatttggac caagagaaca gaaattttat tccgaatgag ggattagttg
    18841 ttatgcaacc tggagaggca gaaggaatca tcattggcgg gaacttatgt acgcttaatt
    18901 tactccaagg aaccgagtac atgcctaact tagcaggtac cattttattt attgaagatg
    18961 attttatgac tgttccagaa acattcgacc gggatttgga atcgctatta agtcaacccg
    19021 gtgcagatga gatagaaggg ctggtaatcg gtcgtttcca acagaagaca gcgatgacag
    19081 cggagaaatt agcatatatt attgaaacaa aaacggcatt acaaaaaatc ccagttatat
    19141 ctggtgcgga ttttggtcat acacagccaa ttgcgacatt cccgattggc ggaactgcaa
    19201 gaattgatac aaatcagacc gataaaattc aaattattag gcattaaaaa aaggctgtcc
    19261 aatgcggaca gcctttttaa tatttaactt aaagcgacat ctcgtttttt gaataagaag
    19321 aaagtgaaga aaaggataat cgctgtataa acacctagac cggcgattat ttgccaatct
    19381 gctaggccac cggcgatttt agaaccgcca actgtgtcat ttaggctgag caagttgaag
    19441 ataatccatt tcatccaatc gtatttttcg atagcgagag gtagtaattg gcgaataatt
    19501 ccaccggaga atagtacacc aacgccgaca ccaactgcaa gtgcttgtga acgaacgaca
    19561 gaggagaaga agaaagcaat agttgcgtat acgatcatca gtaagaagtt cgtaccaagt
    19621 agcatccacg catgttcgaa agcagtcatt gcacccgttg aaggggagag cggcataaaa
    19681 atagattgtt ttggtaaaat aaatgaaaag ataaagctag ctacaagtaa tgtgatagag
    19741 ctaataatgc tgtaaacgat acacattacg tatttggaaa atagtatctg acttctagaa
    19801 taaggacgtg tcagtaaaag tttgattgtc ccaccagaaa actctgttgc aacgatgata
    19861 cttgctacaa caacaacaag cattgtcgca acggctcctg agctacctaa tgaagcgaag
    19921 aaatctgcgc ttgaaatacc tgctgaatta ctagcgggtt tttcatctgc atcgacataa
    19981 gcttggtaaa aatcaatttg tttttggata gtttctttgg cttcttttgt tggagccgct
    20041 tgttcttgtg tttttaagta agcaacagaa tcagttaaag ataacgtttc agatttatac
    20101 gtaggattac catctttatc tgcggagttc caatattctt cttcgctaac cggggcacct
    20161 ttatcgtcat agtaagcagt aataccagca ttacttgcgt cgccgccttc gataccacta
    20221 gtatctattt tactaacaaa aaacataaga agagcaagag ctaaaactgc tacaaataag
    20281 acgatttgca taatccaact tgattttctg gaaaataatt tggtaaattc attttttact
    20341 aatgctatca tacttctgca cctccacctt tagttaattc gaggaatcgt tcttcaaggg
    20401 aggcttgaag tggaaccatt tctaataaat caatatttgc ttggataagc gcacgagcaa
    20461 ttagatgtac atcttcgtga gccacttcga ttttgaatag atcctcattt tgagcaacaa
    20521 gcttgactgg gagtgtagcg agaacggttt tagttgcttc gggatcgcta acttttagtt
    20581 tataagcagc gacatgattt tcaattaggt cgctcatttt ttcgatgtgc gttagaacac
    20641 ctttgttaat aatcgcaaat cgatccgtaa tttgttggat ttcgctaagt aaatggctag
    20701 aaattaaaac agaagtacca tttgtcgcta aatcgcgaat cagcgttctg aattcggcca
    20761 taccttgtgg atcaagtccg tttgttggtt catctaagat aagtaaagca gggctatgaa
    20821 ttaaagcttg cgcaacacct aaacgttgac gcataccgag agaatatgtt tttactttct
    20881 gattaattgc gccagtaagc tttacaagtt caacgatttc acgaacgtgt tcgtcagtaa
    20941 tatttttttg actcatacgt gcgaattgct ttaagtttgc ccatccagac atatacatat
    21001 aaaattctgg attttcaata atagcaccta cttctgaaat cgctgcttta tattctgtgt
    21061 cgacattttt accattaata aaaacggtac cttctgagcg acgaattaaa ccaacgatag
    21121 agcggattat agttgtctta ccagcaccgt ttgggccaag taaaccaaat acttctcctt
    21181 tatgtatgtc aaagctgata tcgtggacaa tatttttttg tccgattttt ttcgtgacat
    21241 gttctaattt taaaactgtc tcagtcatga actcactcct ttttttctct cactactaaa
    21301 attgtactat tttttagttc taattacatt cggctagagg acgggaaaaa atcatacttt
    21361 agtagtagac tcattttcta agttaaggtg ccaatctatg ctgtaatgat cgattacttt
    21421 cgcgtatttt gcgtcccaaa atgtattttg aatcggaatt tcgatggtgc cggttttgga
    21481 tagtaggaca aaggcatgta caaaatctgc ttccgaacta aaattcaccg caagtgctag
    21541 gcgattgccc gcgtctgttt cgccttcgag cgtgtcggag aaataaaata aatctttctc
    21601 gtctttcgta agtcttgcat ggaggattcg ttctccttgt tttttatctc ctgagaatcc
    21661 ttccagctcg tgaaaataac gcatttgcgt aatttctgct tgaaacactt ttttataaaa
    21721 atctagtgct tctgtggcct ccccgtcaaa agtaaagtag ggaaccgttg cttgtatcat
    21781 taaatcaact ccattcttgt tccattatac taattttagt actaaagcga aagcgcaagc
    21841 cctgggatgg acttgcgctt tcttctaact ttatatatta atggtggaca agttagctag
    21901 tttcaaacac ctttgtaagc ttctaggtag atttctttga gttcacttac aagtggttgt
    21961 ttagggttgg cagtagtaca ttggtccatg aatgcgcgat ctgcaagtgt atctacaact
    22021 gcatccaaat cttttttagc aacattttgt cctttaagac tcatgtcgat accaacgtct
    22081 ttaccaagtt tgatgatttc atctacaagt gatttaacgc cttcttctgt agttgctgca
    22141 gggaagccga taatacgaga gatacgagca taatcttcat cagcacggaa gctttcatat
    22201 ctagggaata acgcatgttt tttaggttta agtgcgttat aacgaataac atgtggcata
    22261 aggattgcat tcgcacgacc gtgaggaatg tggaattcag gtccaatttt gtgtgccaag
    22321 ctgtggttaa ttcctaggaa cgcatttgca aacgccatac cagctagggc agaagcatta
    22381 tgcatttttt cacgcgcatc tggatcacca gtaagaacag attcacgtaa gttttcaaat
    22441 acaagttcga ttgcgcggat agataatcca cgagtataat cgcttgccat tacggataca
    22501 taagattcaa ttgcgtgagt tagaacgtcc ataccagtgt cagcagtaat gtgtgctgga
    22561 acagtagtta catattgtgc atcaacaatc gcaacgtctg gagttagttc ataatcagca
    22621 agagggtatt taatgttgtt ttctttgtct gtaataaccg caaatggagt tacttcagaa
    22681 cctgtaccac ttgttgttgg aattgcaacg aatttcgctt ttccaccaag tttaggatat
    22741 ttgaaagtac gtttacggat atctaagaat ttttgtttca atccgaagaa tgaagcttct
    22801 gggtgttcat agaataacca catacctttg gcagcatcca ttgcggaacc accaccaaga
    22861 gcgataattg tatcaggttt gaagtctttc attagttctg cacctttgta aactgttacg
    22921 tcagatggat ctggttcaac gtcagcaaat acttggtaag ctacatcgtt gccacgtttt
    22981 ttcaggtgtt cgattacgac atccacgtat ttgaattgaa ccattcctgg gtcagttacg
    23041 ataaatacgc gttcaacgcc ttccattttt tgaaggtatt gagtggaata tttttcaaag
    23101 aaaatttttg gtggaagttt gaaccattgc atattatttc tccgatccgc gatacgttta
    23161 acgttcagca agttagtcgc acttacattt tgtgatacag agtttttacc gtaagatcca
    23221 caacctagtg ttagggaagg gatgaagccg ttataaatgt caccgatacc gccttgtgcg
    23281 cttggtgcat ttacgatgat acggcaagct ttcatacgaa taccaaatgc tttttgaact
    23341 tctttatccg tagagtgaat aactgcggag tgtccaagtc ctccgtatac taacatttct
    23401 tcacaacgat cgaatgcttc tgcttggtta gcagcttcga tgaatgcaag aactgggctt
    23461 aatttttcgt gagatagtgg gtatttgtcg ccaacacctt taatttcagc tacaaggatt
    23521 tttgtatctt ctggaacttt gaagccagct tgatttgcaa tccatgcagg ggatttacca
    23581 actacatctg ggttaagtgt tcctttttca ggattgatta cgtagctttc taattttttg
    23641 aattcagcgc ctttaacgaa gtagcatttg tttgcttcca tttcagcttt aacttcttta
    23701 gcgacttctt tatccacgat gactgcttgt tcagaagcac aaatcatacc ttggtcaaaa
    23761 gatttagaaa gaataatgtc attaacagaa cgtttaattt tggctgtttt gtcaatgtaa
    23821 gctggtacgt tacctggtcc aacacctagt gcaggtttac cagtagagta tgctgattta
    23881 accattccag caccaccagt tgcaagtaca agtgctactt tatcgtgatt cattaattgt
    23941 ttcgttgctt ctagagaagg tttttctacc cattgaatac aatgttctgg tgctccagct
    24001 gcaattgctg catcgtatac aactttcgct gctgcagatg aacaacgctg tgcacttgga
    24061 tggaaagcaa agatgattgg gttacgtgtt ttgatagcga taattgcttt gaaaagagta
    24121 gtggatgttg ggttagttac aggtgtaacc ccggcaacaa ctccaactgg ttcagcaatt
    24181 tcaatcacac cagtttgtac atcttcatta ataacgccta ctgttttgtt gtttttaatg
    24241 ttgttccaaa tatattctgt cgcgaagatg tttttaatac atttatcttc gtataatcca
    24301 cgtccagttt cttctactgc taattttgca aggggcatat gttggtcaag tccggcaagt
    24361 gccattgcgt gaacgatatt gtctacttgt tcttgattgt aactttcaaa tgctttcaat
    24421 gctttttgtc cattgtctgc taatctgtca atcacttttt gaacttctaa tacttcttgg
    24481 gccgcatttt ctttaattgc cattttccag aacctcctaa tatttgttcg ggacttaaaa
    24541 tgtccatagt agacttttaa cgtccctgat aatccaaaaa aatttagctt gttgctttgc
    24601 cgtattcttt tgttttattt gattacaccg ttagtataat ccatcaataa aagtttgtcc
    24661 agtgtttcac gtgaaaaact tcacaaattg acaaagatgg ttgaaaagtc ctttcggaaa
    24721 agcttttttt agttaattag gcatggttta tatgagtgtt tttatcattg gaatttaagc
    24781 tgattatcat ttgaaaac
//
LOCUS       DABQVC010000018        23392 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.018,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000018 DABQVC010000000
VERSION     DABQVC010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23392
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.018"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            246..1286
                     /gene="rsgA"
                     /locus_tag="IBJ56_000488"
     CDS             246..1286
                     /gene="rsgA"
                     /locus_tag="IBJ56_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HAM3416772.1"
                     /translation="MTLEQYGFTNFFKEQKIAATSSYGRVTAVFRDYYRVITENEEFL
                     ASLKRGNFYELSSTSLPAVGDFVEVSSDAQILSVLERKTVFSRMNKDSEEQLIAANFD
                     YALIVMSLNHDFNLNRLERYLTVAWDSGATPIIILTKADLVEDLTAFAQQLETVAYGV
                     PAYYVDNLSHHGFEALERDLKPNSTLVLLGSSGVGKSSFINSLAGTDLMKTAGIREDD
                     SKGKHTTTHREMHLLTNGWIVIDTPGMREFGVGFNQAGLETTFSDVEELAEGCRFHDC
                     SHTQEPGCAVKAALEDGTLTMQHYENWLKLQREMAYHARKNSPALARQERDRWKVIQK
                     SLRTHLKTRPKK"
     gene            complement(1325..3496)
                     /gene="pnp"
                     /locus_tag="IBJ56_000489"
     CDS             complement(1325..3496)
                     /gene="pnp"
                     /locus_tag="IBJ56_000489"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HAM3416773.1"
                     /translation="MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAA
                     VGSKKPRPGDFFPLTVNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLF
                     AEGFRNEVQITSTVFSVDQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKY
                     VINPTIEQAEKSDISLTVAGTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQ
                     QQIIAAVGKEKREIELFVSDPELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEI
                     LESYKAKELENEAEILGEVAHILEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVG
                     MLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEYKRFMHHYNFPQFSVGET
                     GPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQASICGSTL
                     AMLDAGVPIKAPVAGIAMGLVKLGDDYTILSDIQGMEDHFGDMDFKVAGTKDGITALQ
                     MDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPKIITLNIKPEK
                     IKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVG
                     EVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVD
                     QQGRVNLSRKALLEKKEQPEGDKKPQAEKKFYPKTKKPESK"
     gene            complement(3744..4013)
                     /gene="rpsO"
                     /locus_tag="IBJ56_000490"
     CDS             complement(3744..4013)
                     /gene="rpsO"
                     /locus_tag="IBJ56_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011066003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HAM3416774.1"
                     /translation="MALTQERKNEIIAEYRVHDTDTGSPEVQIAVLTAEINSLNEHVR
                     VHKKDHHSYRGLMKMVGHRRNLLTYLRKKDVQRYRELIKRLGLRR"
     gene            complement(4150..5094)
                     /locus_tag="IBJ56_000491"
     CDS             complement(4150..5094)
                     /locus_tag="IBJ56_000491"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HAM3416775.1"
                     /translation="MKTIYLHHPITTDEWTDINKVMALGFFDGVHLGHQAVIKKAKQI
                     AEKKGLQTAVLTFDPHPSVVLSNIRKQVKYLTPLEDKAEKMAELGVDIMYVVRFTTQF
                     SELSPQAFVDNYLVALHVQHVVAGFDYSYGKKGEGKMTDLAKYADGRFEVTIVDKQTA
                     ASDKISSTNIRRAIIEGELEEANQLLGYPYTTKGTVIHGDKRGRTIGFPTANIRVNED
                     YLIPKLGVYAVKFRVNGETHLGMASIGYNITFKDDQALSIEVYILDFHREIYGEEAEI
                     EWYQFFRPELKFNGVEGLIAQLEKDEQDTRAFFANLED"
     gene            complement(5164..6078)
                     /gene="truB"
                     /locus_tag="IBJ56_000492"
     CDS             complement(5164..6078)
                     /gene="truB"
                     /locus_tag="IBJ56_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HAM3416776.1"
                     /translation="MNGIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGV
                     LPICIGRATKLAEYVTDEGKVYVAEITLGKSTTTEDATGETVMTKELADISADELQAA
                     LTKLTGKITQIPPMFSAVKVNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNE
                     ANPTFQLEISCGKGTYIRTLAVMIGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDE
                     MMQASDSSFLYPLEKGIESMAKLVIDEEIHAKVLNGGLLPKSLFIEVENEPRAALIFK
                     DKLTAINKPHPEKNELWKPEKVIELHQA"
     gene            complement(6174..6518)
                     /gene="rbfA"
                     /locus_tag="IBJ56_000493"
     CDS             complement(6174..6518)
                     /gene="rbfA"
                     /locus_tag="IBJ56_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HAM3416777.1"
                     /translation="MNVRANRVSEQMKKELGDILNRKIKDPRLGFVTVTGVDVTGDLQ
                     EAKVFISILGTDKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNR
                     IDELLRDLNNDQ"
     gene            complement(6535..6813)
                     /locus_tag="IBJ56_000494"
     CDS             complement(6535..6813)
                     /locus_tag="IBJ56_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF503 domain-containing protein"
                     /protein_id="HAM3416778.1"
                     /translation="MIQSVVSEFFMQEPQNLKEKRAILKRIVTRAKQKFNISIAETDY
                     QDLWQRAEISFAIVSSSHIQAEKEAREVLAFLDSFPEWERAETVMEKL"
     gene            complement(6810..9158)
                     /gene="infB"
                     /locus_tag="IBJ56_000495"
     CDS             complement(6810..9158)
                     /gene="infB"
                     /locus_tag="IBJ56_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HAM3416779.1"
                     /translation="MSKVRVYEYAKEHQVSSKKVIEALKDLGIEVANHMSTINENALR
                     QLDNAIDGTNKKAEAPKKETTSNENGNSKGPNKPNMTNSNEKSNKPNNPAGQANKPAT
                     ANKSQGAKPATNKPANTSKQTQSSGNQQQAGGQKRNNNNNSNRPGGGNPNRPGGNNRP
                     NRGGNFNNKGRNTKKKGKLNHSTVPPTPPKPKELPEKIVFSESLTVAELAKKLYREPS
                     ELIKKLFMLGVVATINQSLDKDAIELICDDYGVQVEEEIKVDVTDLDVYFENELNEAV
                     DESKLVERPPVVTIMGHVDHGKTTLLDSLRNTKVTLGEAGGITQHIGAYQLEIHDKKI
                     TFLDTPGHAAFTAMRARGAQITDITILVVAADDGVMPQTIEAINHAKAAGMPIIVAVN
                     KIDKPQANPDRVMQELTEYELVPEAWGGDTIFAPISAKFGEGLENLLDMILLVSEVEE
                     LKANPDRRAIGSVIEAELDKGRGPVATLLVQDGTLNIGDPIVVGNTFGRVRAMVNDLG
                     RRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTARNIGETRASRALVAQRSATNRV
                     SLDNLFEHMKAGEMKEVNVIIKADVQGSVEALAASLRKIDVEGVNVKIIHTAVGAINE
                     SDITLAAASNAIVIGFNVRPTAQAREAAENESVDIRLHRVIYKAIDEIEAAMKGMLDP
                     EFQEKIIGQAQVRQTINVSKVGTIAGCYVTDGKITRDSGVRIIRDGIVVFEGEIATLK
                     RFKDDAKEVAKGYECGITVQNFNDIKEDDVIEAYVMEEIERK"
     gene            complement(9181..9480)
                     /locus_tag="IBJ56_000496"
     CDS             complement(9181..9480)
                     /locus_tag="IBJ56_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ family RNA-binding protein"
                     /protein_id="HAM3416780.1"
                     /translation="MDKKALSLLGLANRARKITTGEELVLKAVRNGKAKMVLISEDIS
                     EKTEKTIRNKCEYYNVVVKKAGTREMIGGAIGKDTRAIVAILDKGFAVKLAELLG"
     gene            complement(9473..9757)
                     /locus_tag="IBJ56_000497"
     CDS             complement(9473..9757)
                     /locus_tag="IBJ56_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HAM3416781.1"
                     /translation="MRNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPG
                     RGFYIIKSVEVCEKAKKKNAIFHQLKMPEQESFYDELITYVKSLEEPTNG"
     gene            complement(9772..10890)
                     /gene="nusA"
                     /locus_tag="IBJ56_000498"
     CDS             complement(9772..10890)
                     /gene="nusA"
                     /locus_tag="IBJ56_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HAM3416782.1"
                     /translation="MSTELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQN
                     VRVDLNMENGSIRVLARKEAVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDF
                     GRIAAQTAKQVVTQRVREAERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAI
                     LSQNEQMPNETYHAHDRIKVYLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDG
                     VVEIKSVAREAGDRSKISVYTANEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWS
                     EDPFTFVANALSPSKVLDVIVNEADQATTVIVPDYQLSLAIGKRGQNARLAAKLTGWK
                     IDIKSETVATELGIYPRNDVEAPEVEDAESETYTEDEE"
     gene            complement(10920..11387)
                     /gene="rimP"
                     /locus_tag="IBJ56_000499"
     CDS             complement(10920..11387)
                     /gene="rimP"
                     /locus_tag="IBJ56_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HAM3416783.1"
                     /translation="MSKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKD
                     GGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHV
                     TSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF"
     gene            complement(11569..15903)
                     /locus_tag="IBJ56_000500"
     CDS             complement(11569..15903)
                     /locus_tag="IBJ56_000500"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HAM3416784.1"
                     /translation="MTAKEEEKQERFQLLMTQIGLQDVTTYEEFTKDAKIEKLVADKK
                     NKTWQFHLHVPQIFPAALFHMMDVGMKRAFSQIAETEMQIVPENQTIDETLIQDYWNL
                     IVEPIGKQSPMIGKLLMEQKPTFKEPHFIEVAVHNDMEEATIQQRFQTKIIESYGKAG
                     FPRLAMKMHLLDQSETEEYKAFALAKQEEDQKKAAEAVQVMQKRQAEGQSGGGGAAPL
                     TGPFQIGYKIKDDEEVKRLGDIYDEERRITVQGLIFATEIRELRSGRSLLQFKITDYT
                     SSMIIKMFSRDNEDAAMFQNLKKGMWVKVRGSVQNDTFVRDLIMMAQDVNEIAGVKRL
                     DTAEEKRAELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAG
                     QKYGLKVIFGIEANLIDDGVPIAYNDQHIALEDATYCVFDVETTGLSAVYDTIIELAG
                     VKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDDMVKGSDPIDVVLKRFKEWSGDDI
                     LVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFLYPHFKNHRLNTLTKKFNII
                     LEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIY
                     AQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQK
                     GMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVA
                     TGNVHYKDPVDKIYRKILIHSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKE
                     IVVTNANLVVDWMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEAR
                     LEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVGSRGSVGSSFVATMTEITEVNPLP
                     PHYLCPNCKDSEFFDDGSVGSGFDLPDKNCPHCGTPYQKEGQDIPFETFLGFKGDKVP
                     DIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYERDMNMTIRG
                     AEIDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH
                     SIHDNVLKLDILGHDDPTAIRMLQDLSGIDPKTIPTDDPDVMKLFGSTESLGVKSADI
                     DSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVWLGNAEELIKNKTC
                     ELPDVIGCRDDIMVFLIYQGLESSLAFKIMESVRKGKGLTEEMEEAMMANKVPLWYIE
                     SCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEA
                     VKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDS
                     LIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQRGKVSKTIIQYMDDQGCLEGLP
                     DQNQLSLF"
     gene            complement(16009..17715)
                     /locus_tag="IBJ56_000501"
     CDS             complement(16009..17715)
                     /locus_tag="IBJ56_000501"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007474535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HAM3416785.1"
                     /translation="MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLP
                     LATLMLRKIETIIREELEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASR
                     DFALGPTHEEVITALLRDEVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDA
                     YSFHATSESLDEVYNLMHQAYSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGE
                     DTIAYSDASDYAANTEMAPVLYMEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEK
                     TMKSMLYQVDDEVIMVLVRGDHEVNDIKIKNALDATNVELVDPAVAVELLGANFGSLG
                     PINVPENTRVFADNAVKDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDL
                     SPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILS
                     AIAEQSNDENGFVWDKQISPFDLHLIPVNVKSEEQVAFAETLYSSLQDAGFSVLIDDR
                     AERAGVKFADADLIGLPIRITVGKKAAEGVVEVKIRKTGEMIEVRQDELLNTLPILFG
                     DK"
     gene            complement(17756..19018)
                     /gene="rseP"
                     /locus_tag="IBJ56_000502"
     CDS             complement(17756..19018)
                     /gene="rseP"
                     /locus_tag="IBJ56_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HAM3416786.1"
                     /translation="MTTIIAFIFVFGLIVFFHELGHFLFAKRAGIMVKDFSIGFGPKI
                     FAYRKKETQYTIRLLPIGGYVRMAGEDGEEIELKPGYRVGLELTPEETVSKIIVNGKD
                     QYVNAQPIEVSLCDLEKELFIEGYEDYDDTKKVRYQVERDALVIDDKIETMITPYDRS
                     FNAKSLGNRAMTIFAGPLFNFILAILIFTALAFVQGGVPSTDNTLGNVLPDGAAAEAG
                     LKKGDEVLSINGKETKSWTDIVQSVSENPGKTLDFKIERDGKTQDIDVKPATQKENGK
                     DVGKIGVETPMDSSFTAKITNGFTQTWNWIVQIFTILGNMFTGGFSLDMLNGPVGIYT
                     STQQVVQYGFMTVLNWTAVLSINLGIVNLLPLPALDGGRLMFFLYELVRGKPIDPKKE
                     GIIHFAGFALLMVLMILVTWNDIQRAFF"
     gene            complement(19032..20174)
                     /locus_tag="IBJ56_000503"
     CDS             complement(19032..20174)
                     /locus_tag="IBJ56_000503"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HAM3416787.1"
                     /translation="MKKIILLGATGSIGTQTLAIIRENPEKFQIVALSFGRNMERGRA
                     IIKEFKPKMVAVWHTRDRVILEAEFPNVKFFNGLEGLREVATYLDGDVLLNAVMGSVG
                     LLPTLDAIEAGKAIAIANKETLVTAGHLVMRAAKEKNISLLPVDSEHSAILQALNGEN
                     TERIEKLVLTASGGSFRDKTREQLSEVTVKEALKHPNWNMGNKLTIDSATMFNKGLEV
                     MEAHWLFGVDYDDIEVVIQRESIIHSMVQFVDGSFIAQLGTPDMRMPIQYALTYPDRL
                     YIPYEKEFRITDFSALHFEKVDYERFPALKLAYNAGKIGGTMPTVLNAANEIAVAGFL
                     NGQVAFYNIEALVENAMNRHTSISDPDLDTILQVDQETRAYVKTLL"
     gene            complement(20189..20977)
                     /locus_tag="IBJ56_000504"
     CDS             complement(20189..20977)
                     /locus_tag="IBJ56_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HAM3416788.1"
                     /translation="MKTRIITAVVALIFFIPFVVYGGIPFELLSILLATIALYEVLVM
                     TKQRIFSMNGIITLLLMWLVVVPDRYLDFLETLHITEMEVIFILMALLLANTVFSRNK
                     FHFDQVGICMVAAFYTGFGFHYLALTREAGLMYVLFALFIVWSTDTGAYFIGKAIGKH
                     KLAPNVSPNKTVEGFIGGIVCALVIAGGFYYFAELPGNIALVLALLVFLSIFGQLGDL
                     VESALKRFYGVKDSGKILPGHGGILDRFDSLLFVLPLLHILQII"
     gene            complement(20991..21749)
                     /locus_tag="IBJ56_000505"
     CDS             complement(20991..21749)
                     /locus_tag="IBJ56_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HAM3416789.1"
                     /translation="MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLP
                     RIAGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSF
                     VPELIEENVRVNVMGYRENLPNHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITA
                     AKEAMKELEFEGKSADDLTEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYS
                     EFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL"
     gene            complement(21980..22537)
                     /gene="frr"
                     /locus_tag="IBJ56_000506"
     CDS             complement(21980..22537)
                     /gene="frr"
                     /locus_tag="IBJ56_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HAM3416790.1"
                     /translation="MSKEVLSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDY
                     YGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSI
                     PQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDV
                     QKLTDESIKNIDSITKDKEAEILEV"
     gene            complement(22537..23265)
                     /locus_tag="IBJ56_000507"
     CDS             complement(22537..23265)
                     /locus_tag="IBJ56_000507"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HAM3416791.1"
                     /translation="MDTPDYKRVVLKLSGEALAGNDGFGINPSVVNLISAQIKEVVEL
                     GVEVAIVVGGGNIWRGKLGSEMGMDRAAADQMGMLATIMNSLSLQDSLENIGVATRVQ
                     TSIDMRQIAEPYIRRKAIRHLEKGRVVIFAGGTGNPYFSTDTAAALRAAEIEADVILM
                     AKNNVDGVYNADPKLDENAKKYEELSYLDVIKEGLEVMDTTASSLSMDNDIPLIVFSF
                     TEQGNNIKRVILGEKIGTTVRGKK"
BASE COUNT         6564 a         4988 c         4086 g         7754 t
ORIGIN      
        1 agtacattcg tgatggtagt tataatctca aaagtgatat gagctatgaa acgattgcta
       61 aaattttaac gcataaaaat taatacaaaa aaaggaaata agtctagagc ttgtttcctt
      121 ttttgtgtta ttatttaaga aagaaaggat gatgaattat ggcaattgta aaaatggaaa
      181 acctcataat taatacgggg gtattttacc tatagaatgc tcccaactac aaaggagcga
      241 aaacattgac attagaacaa tacggtttta caaatttttt taaagaacaa aagatagctg
      301 ctacctcctc ttatggtaga gttacggcgg tatttagaga ttattatcgc gttattacgg
      361 agaatgaaga atttttagca tcattgaaac gtggaaattt ttatgaacta tcctctactt
      421 cccttcccgc tgttggtgat tttgtagagg tcagtagcga tgcgcaaata ctctctgtac
      481 tagagcgtaa aacggtcttt tctcggatga ataaagactc agaggaacaa ttgattgcag
      541 cgaattttga ttatgctctc attgtgatga gtttgaatca tgactttaat ttgaatcgat
      601 tagagcgtta tttgacggtt gcttgggata gtggtgcaac accgattatc attttaacaa
      661 aagcagattt agtggaggat ttaacagcct ttgctcagca gctcgagaca gttgcttatg
      721 gcgttccagc atactatgtg gataatttat cacatcatgg ttttgaagct ttagaacgcg
      781 atttaaagcc gaatagtacg cttgttttgc ttggctcttc cggtgtcgga aaatcttctt
      841 ttattaattc gcttgcaggt actgatttaa tgaaaactgc tggtatccgc gaagatgata
      901 gtaaaggaaa acatacgacg acacataggg aaatgcattt gcttacgaat gggtggattg
      961 tgattgatac acctggaatg cgtgaattcg gtgttggttt taaccaagct ggattagaaa
     1021 ccactttctc ggatgtagag gaattggctg aaggatgtcg ttttcacgat tgctctcata
     1081 cacaagaacc aggttgcgct gtaaaagcag cattagaaga tggcacttta actatgcaac
     1141 actacgaaaa ttggttgaaa ttgcagcgag aaatggctta tcacgctcga aaaaatagcc
     1201 ctgctctcgc aagacaagaa cgtgaccgct ggaaagttat tcaaaaatca cttcggacac
     1261 atttaaaaac acgtccaaaa aaatagtaaa aaaagcaagt agctcaggct acttgctttt
     1321 tgtattattt agattctggt tttttcgttt taggatagaa ttttttctct gcttgtggtt
     1381 ttttatcgcc ttctggttgt tcttttttct caagcaaagc tttacgtgat aagttaacgc
     1441 gaccttgttg gtctacttcg ataactttaa cagtaacttc atcacctagt tttaggatat
     1501 cttctacttt accaacacgt tcatgtgcta attcagaaat gtgaactaag ccatctgtac
     1561 ctttgaataa ttcaacaaat gcgccaaatt tttcgatacg acgaacttta ccagtataaa
     1621 cttctcccac ttccacttca cgaacgatgt cttcgatgat agcaattgct ttacggttca
     1681 ttgcttgatc ttgagaagca atgtacactg taccatcttg ttcgatatca atttttacgc
     1741 cagtttcatc aataattgca ttgatttgtt ttccaccagg tccaataaca tctttgattt
     1801 tctcaggttt gatgttaagt gtaatgattt ttggagcata agcagaaagt tcttcacgtg
     1861 gtgcgctaat tgtgctagtc aagtgttcta gaatgtgtag gcgcccttct tttgcttgtg
     1921 ttaatgcttc gtccaaaatt tggcggctta agccatcaat cttgatgtcc atttgaagtg
     1981 ctgtgatacc atcttttgtt ccagcaactt taaagtccat atcgccaaag tgatcttcca
     2041 taccttggat atcagaaaga atggtgtaat catcgccaag tttgacaaga cccattgcga
     2101 tacctgcaac tggcgcttta attggaacac cagcatcaag cattgcaagt gtagaaccac
     2161 aaatacttgc ttgcgaacta gagccattag attcaagaac ttcagatact aaacggattg
     2221 tgtacgggaa ttcctcttcg gaaggaataa catattgtaa cgcacgttca cctaatgcac
     2281 cgtgaccgat ttcacgacga cctggagcac gacgaggacc tgtttcccca acactaaatt
     2341 gcgggaagtt ataatgatgc ataaagcgtt tgtactcttc tgtccctaaa ccatcaatga
     2401 tttggtgttc acgaagcggt gccagtgtac atacacttag agcttgtgtt tgaccacgag
     2461 tgaataaacc tgaaccatgg acacgaggaa gcataccaac ttcagaagaa agtggacgaa
     2521 tttcgtttac tttacgacca tctggacgga ttttatcttg agaaattaaa cgacgcattt
     2581 cgtctttttc gatcatttca agaatatgag ctacttcgcc aagaatttct gcttcgtttt
     2641 ctaattcttt tgctttatag ctttctaaaa tttcttcttt tacttcttca atagcagctt
     2701 cacgtgcttt tttctcttct gttttgatag ctgctttcat tttaccttca cttgctgctt
     2761 ttacttctgc ttcaagttca ggatcgctta cgaaaagttc aatttcgcgt ttttctttac
     2821 caactgcagc gataatttgt tgttggaatt cacaaagacg tttaatttct tcgtgaccga
     2881 acatgattgc ttcaagcatt gcttcttctg aaacttcttt cgctccagct tctaccatgt
     2941 tgattgcatc ataagttcct gcaacggtta agctaatatc acttttttct gcttgttcga
     3001 tagttgggtt gataacgtat tttccatcga tacgacccac atccacacca gcgatcggtc
     3061 cttcaaatgg aatatcggaa ataactaatg caacagaaga gccaagcatt gctgccattt
     3121 ctggagaaca atcttgatcc acactgaaaa cagtagatgt aatttgaact tcattacgga
     3181 aaccttctgc aaataatgga cggattggac ggtcaattag acgcgctgtt aatgtcgcac
     3241 ggtcactagg acgtccttca cgttttaaaa atccaccggg aactttacca acggagtaca
     3301 ttttttcttc atagttaact gttagtggga aaaagtcgcc tggacgtggt tttttagaac
     3361 ctactgccgc tgttaaaacg accgtatcgc cgtaacgaat taaggctgct ccacttgctt
     3421 gttttgctaa ttgacctact tcgacagata atgtcttacc tgcccattct gttgaaaata
     3481 cttgtttttc agacatattt taatctcctt tgattaggaa aaacacgaac cagaaacttt
     3541 accatgcata agaatgttca cgcacacttt agattttcta aagcacacat gaatccaaaa
     3601 acctgctaaa aatagcgatt tttgaagcac gtttttggat tcatgcgata aagtttcatt
     3661 tcttcggcgt gttttccaaa atttagtata gttaatactc aaaaaaaagc gggaactttt
     3721 ggtatcccgc tttcgtctgg tttttatcga cgtaaaccta aacgtttgat aagttcgcgg
     3781 taacgttgaa catctttttt acgtaggtaa gttaataggt tacgacggtg acctaccatt
     3841 ttcattaatc cacggtaaga gtgatgatct tttttgtgta cgcgaacgtg ttcatttaag
     3901 ctattgattt cagcagttaa tacagcgatt tgtacttctg gtgaaccagt atctgtatca
     3961 tggacacggt actctgcaat aatttcattt ttgcgttctt gagttaaagc catttctttc
     4021 cacctccttc taaaatatcc ccaattactg agccaagcgt cggtgagtcg caaaagccaa
     4081 gtaatggttc tgttcgtaca gatttaaaga tacactattt aggctctaaa agcaagcaga
     4141 aatagtcgtt taatcctcta aattagcaaa aaatgctctt gtatcttgtt cgtctttttc
     4201 taactgagca atcaaacctt ctaccccatt aaatttaagt tctggtcgga aaaattgata
     4261 ccattcaatt tctgcttctt cgccgtaaat ttcgcggtga aaatctagaa tatatacttc
     4321 aatggacagc gcttgatcgt ctttaaacgt gatattgtag ccaatgctag ccatccccaa
     4381 atgagtttcc ccgttcacgc gaaattttac tgcatagaca ccaagtttcg gaatcaagta
     4441 atcttcattt acacggatat tcgctgttgg aaaaccaatt gttctacctc gtttatctcc
     4501 gtgaatgacg gttccttttg ttgtatatgg atagcctagt agttgatttg cttcttctaa
     4561 ctcgccttct ataatcgcac gtctgatatt tgttgagcta attttatcac ttgcagcagt
     4621 ttgtttatca acaatcgtaa cttcaaaacg accatcagca tatttagcca aatcagtcat
     4681 tttcccttcg ccttttttac cgtaagaata gtcgaaacca gctaccacat gctgtacatg
     4741 caaagcgact aaataattat ccacaaaggc ttgcggagat agctcggaaa actgtgttgt
     4801 aaagcgaact acatacataa tatctacgcc aagttcagcc attttttccg ctttatcttc
     4861 aagtggtgtg aggtatttca cttgtttgcg gatattactt aaaacaacgg atgggtgcgg
     4921 atcaaaagtt aatactgctg tttgaaggcc ttttttttca gcaatttgtt tcgctttttt
     4981 aatgacagct tgatgaccta aatgcacgcc atcgaaaaag ccaagtgcca ttactttgtt
     5041 tatgtcagtc cactcgtccg ttgtaatcgg atgatgtaag taaatcgtct tcatttttgc
     5101 cacttctcct ctaaattcga attcctctca tatcataata taagaaagct atagtcgcaa
     5161 taactatgct tgatgtaact cgatgacttt ttctggtttc caaagttcat ttttctctgg
     5221 atgaggtttg ttaattgctg ttaatttatc tttgaagata agtgcggcac gaggctcatt
     5281 ctccacctct ataaataatg attttggtaa aaggccgcca tttaaaactt tcgcatggat
     5341 ttcttcatca atcactaatt tggccatgga ttcaatgcct ttttcaagtg gatataaaaa
     5401 gctgctatca ctcgcttgca tcatttcgtc aatttctgcc agtgttaagc aatcttcttt
     5461 tttgaaaaag ccgctacgag tccgttctag tttggacatg tgcgctggat atcctaataa
     5521 ttcaccaatc ataactgcaa gtgtgcgaat ataagtacct tttccacaag atatttctaa
     5581 ctgaaaagtc ggattcgctt catttagcgt agcctcgcca tctaagcgag ttaacgaata
     5641 aatatccact tgcctggatg ggcgttccac ctctatacca gctcttgcat attcatacaa
     5701 tttcttgcca ttgactttta cagcagaaaa cataggggga atttgagtaa tttttccagt
     5761 caatttagtg agcgcggctt gaagttcatc agcggaaatg tctgctaatt ccttggtcat
     5821 aaccgtttca ccagtcgcat cttccgttgt agtcgatttg cctaaagtta tttctgctac
     5881 gtagactttt ccttcatctg ttacgtattc tgctagtttc gtcgcacggc cgatacaaat
     5941 tggaagtaca ccctctactt ctggatccag cgtgccagtg tgtccaactt ttttcgtatg
     6001 taaaatcttt cttaatttaa aaacgcaatc atgacttgtc atcccgcgtt ctttccacag
     6061 tgggataatg ccgttcatca agctcctcct tttaagaaaa aaagtttaag acaattccca
     6121 cttatatccc gtttgaatga gaagataaag ggactgcctt aaacttttat ttattattga
     6181 tcgttattta agtcgcgaag caattcatcg attcgatttc cgtaagcgat ggaattatct
     6241 atttcaaaag acatttctgg aactttacga agtcgaatac ggcgaccgat ttcagagcgg
     6301 ataaagccat gcgctttcgc aagtgcgagt aacgtatttt ctttttcctt atctgtacca
     6361 agaatggaaa tgaacacctt agcttcttgt aaatcaccag taacatcaac tcctgttaca
     6421 gtaacaaaac ctaagcgcgg gtctttaatt ttacgattta aaatatcgcc caattctttt
     6481 ttcatttgct cactgacacg atttgctcga acgttcaagt gtattcacct ctttttataa
     6541 cttctccata actgtctcgg cgcgttccca ctcaggaaaa gaatcaagaa aagcaagtac
     6601 ttctctggct tctttttctg cttggatgtg cgaggaagat acgatagcaa agctaatttc
     6661 cgctcgctgc cataaatcct gataatccgt ttcagcaatg gagatattga atttttgttt
     6721 tgctctcgtt actattcgtt tcaggatagc tcgtttttct ttgaggtttt gcggttcctg
     6781 catgaaaaat tcactaacga ctgattgaat cattttcttt caatttcttc cataacgtac
     6841 gcttcaatga catcatcttc tttgatatcg ttgaagtttt gtactgtgat accacattcg
     6901 tatccttttg caacttcttt cgcatcatct ttaaagcgtt taagtgtagc aatttcgcct
     6961 tcaaagacaa caattccgtc acggataata cgaacgccac tatcacgagt aattttacca
     7021 tctgttacgt aacagccggc aattgtaccc actttggaaa cattgattgt ttgacgaact
     7081 tgcgcttgac caataatttt ttcttggaat tctggatcaa gcatcccttt catcgctgct
     7141 tcaatttcat caatggcttt atagataaca cggtgtaaac gaatgtctac actttcgttt
     7201 tctgctgctt cacgagcttg agcggttgga cgaacattaa atccaataac aattgcatta
     7261 gaagctgcag caagtgtgat atctgattca ttgatagcac caacagcagt atgaataatt
     7321 ttaacgttaa caccctctac atcaattttg cgaagagatg cagcaagagc ctctacagaa
     7381 ccttgaacgt ctgctttaat aataacgtta acttctttca tttcgccagc tttcatatgt
     7441 tcaaataagt tgtctaaact tacgcggttg gttgcagaac gttgcgctac taacgcacgg
     7501 cttgcacgag tttcaccgat gtttcttgct gttttttcat cttcaaaaac aacaaagcga
     7561 tcgccagctt gcggcacatc atttaatcca gtgatttcaa ctggtgtact tggaccaact
     7621 tttttcacgc gacggcctaa atcattgacc attgcacgaa cacgaccaaa cgtgttacca
     7681 acaacaattg gatctccgat attaagtgtt ccgtcttgta ctagtaaagt cgcgactgga
     7741 ccacggcctt tatcaagttc tgcttcgatg acagaaccga tagcacgacg gtcagggttt
     7801 gcttttaatt cttctacttc agaaacaagt aaaatcatat ctaacaagtt ttcaagacct
     7861 tcaccgaatt tagctgagat tggcgcgaaa attgtatcgc caccccatgc ttcaggaact
     7921 aattcatatt ctgttagttc ttgcattacg cggtcagggt ttgcttgtgg tttatcaatt
     7981 ttgttgacag caacaataat tggcattccc gcagcttttg cgtggttgat tgcttcaatt
     8041 gtttgtggca taacaccatc atctgctgct acaactaaaa tcgtaatatc cgtgatttgc
     8101 gcaccacgag cacgcattgc agtaaaggca gcatgtcccg gtgtatcaag gaaagtgatt
     8161 tttttgtcat ggatttcaag ttggtaagca ccgatatgtt gggtgatacc accagcttct
     8221 cctaaagtaa cttttgtatt acgaagggaa tctagtaatg ttgttttacc atggtcaacg
     8281 tgtcccataa tagtaacaac tggtgggcgt tcaacaagtt tagactcgtc aaccgcttca
     8341 tttagttcat tttcaaagta cacatctaaa tctgttacat cgactttaat ttcttcttct
     8401 acttgcacac cgtagtcatc acaaattagt tcgattgcat ctttatctaa tgattggtta
     8461 atcgttgcaa caacaccaag cataaatagt tttttgatta gttcagatgg ttctctgtat
     8521 aattttttcg ctaattccgc tactgttaga gattcgctga acacaatttt ttcaggaagt
     8581 tcttttggtt ttggcggagt tggcggtact gtactgtggt ttagcttccc tttcttcttc
     8641 gtgttacgac ctttattatt aaaattgccg ccacgattcg ggcgattgtt accgcctgga
     8701 cggtttggat tgccgccgcc tgggcgattg ctgttgttat tgttgttgcg tttttgtccg
     8761 ccagcttgtt gttggttacc acttgattgt gtttgtttac ttgtgtttgc tggtttgttt
     8821 gtcgctggtt ttgcaccttg gcttttgttt gcagttgctg gtttattagc ttgccctgct
     8881 gggttatttg gtttattcga tttttcatta ctatttgtca tatttggttt gtttggcccc
     8941 ttactatttc cattttcgtt gctagtagtt tctttctttg gtgcttcggc ttttttattt
     9001 gtgccatcaa tggcattatc taattgtctt aatgcatttt cattaatcgt ggacatgtga
     9061 tttgccactt caatacctaa gtcttttaat gcttcaatga cttttttgct tgatacttga
     9121 tgttcttttg cgtattcata tacacgaact ttactcatgt cgtacacctc cgtataagat
     9181 tcaaccgagt aattctgcta atttaacagc aaatccttta tcaagtatgg caactattgc
     9241 acgtgtgtct ttgccgattg caccccctat catttcccgg gtaccggctt ttttcacgac
     9301 aacattgtag tattcacact tgttgcggat tgttttctcg gttttttcgg atatatcttc
     9361 tgaaatgaga accatttttg ctttcccatt tctaactgct tttagtacta attcttcacc
     9421 agtggtaatt ttacgtgctc ggttagcgag gcctaataag gaaagtgctt ttttatccat
     9481 tcgttggttc ctcgagagac ttcacataag taattaactc atcataaaag gactcttgtt
     9541 ccggcatttt tagttgatga aaaatggcgt ttttcttttt cgctttttcg catacttcta
     9601 cacttttaat aatgtagaaa ccgcgtccag gtgctttgcc tgtaggatct atcgtaagcg
     9661 ctccgtcttt cgaatacgca atacgaagaa gttcgccttt tggcaagcgt tcaccggtaa
     9721 taatacattt tcgaaggggg atttttttat tacgcatgat aattctcctt tttactcttc
     9781 atcttctgta taagtttcgc tctctgcatc ttccacttct ggcgcttcta cgtcattacg
     9841 aggatagatg cctagttcag ttgcaactgt ttcactttta atatcaattt tccaaccagt
     9901 tagttttgct gctaaacggg cattttgacc acgtttacca attgctagtg ataactgata
     9961 gtctggtacg attaccgttg ttgcttggtc tgcttcgttc acaataacat ctaacacttt
    10021 ggaagggcta agtgcattgg ctacgaatgt gaaaggatct tctgaccatt caacgatatc
    10081 gattttttcg cctttaagtt cattgacgat cgtttggaca cgtgcgcctt ttggtcctac
    10141 acatgcgcca actggatcta cttcttcatt tgcagtgtaa acagagattt tagaacgatc
    10201 tcctgcttcg cgtgcaacag acttgatttc tacaacgccg tcatagattt caggtacttc
    10261 catttcaaaa agacgtttca gtaagccagg gtgtgtacgg gatacaaaaa tttgcggccc
    10321 ttttgtcgtc ttttctactt ttgttaaata tactttgatg cggtcatgtg catgataagt
    10381 ttcgtttggc atttgctcgt tttgggacaa aattgcttcg attttaccaa ggtttacata
    10441 gataaaacga gaatcttgac gttcaacaat accagtcata atatcatctt cgcgatcgat
    10501 aaattcatcg taaatgatgc cacgttccgc ttcacgaaca cgttgggtta caacttgttt
    10561 cgctgtttga gctgcgatac ggccaaaatc ttttggtgtt acttcaagct ccacgacgtc
    10621 acctggtttg tatactggat tcagtttgtg tgcttcttcc atagagattt caaggcgaga
    10681 atcaaatact tgttctactg cttcttttct agctaaaaca cggatagaac cattttccat
    10741 atttaaatct acacgtacgt tttgtgcatc tttgaagttt cttttatatg cagaagtaag
    10801 agcagcttca attgcttcta ctaaaacctc tcttgaaata cctttatcat gttctaacac
    10861 atgaagagca tctaataatt ctgtgctcat tttttattca gctccttatt ctttgctttt
    10921 taaaattgaa ttgcgagtct tgctttggct actttgtctt taggaatttc acaagtgatt
    10981 ttgcgtgttt tgtccgtgat agtaataacg agtgttgtcc cgtcataact aacaagcgtt
    11041 ccttcccaca ttttacggcc atcaattggt tcatatgaag taacgtgaac atatttactt
    11101 accgcatttt caaaatcttg ctctttcttc agtggacgtt cagccccagg agaagatact
    11161 tctaaaaagt agttttgtgt aatggggtca ttttcgtcca ttttttcact aactttttcg
    11221 ctcacggctg cgcattcatc gatatctacg ccaccatctt tgtcaataaa aattcgtaaa
    11281 aaccaatttg gaccttcttt ttcaaaggca atatctacga gttctagttg aagttcatcc
    11341 gtgattggtg taacaattgc ttctacttgt tctagtactt tactcatttc agcctcctta
    11401 agagatacgc ttttccagct aattcgtccc ctacttctgc cacaggtgac tctttgacag
    11461 atttgcaaaa cgaaagcgtg ggcattggcc cacgcttggc tgagttatcg tagtatttct
    11521 taaataagtt tatcacaaat tgtgactaca agcaagtttt gcccattttt agaatagtga
    11581 caactgattt tgatcaggca atccttccaa gcatccttga tcatccatgt actgaatgat
    11641 tgttttggat acttttccgc gctgttgtaa gtcttctttc gacaaaaact ctccattttc
    11701 acgagcggca actatttgtt ttgctacatt ggttccaaga cttggaatcg cattgaatgg
    11761 cggaataagt gagtctccgt caataatgaa ctcatcagca gacgatttat acaaatcaac
    11821 tttttggaaa tggaatcctc gagctagcat ttcattcgca atttctaaaa cggttaataa
    11881 gtttttctct ttcgttgaag cttccatccc tttatcattt acttctttca tggttgcttt
    11941 cacggcttct tttccgttta ccatcgatgt taaatcgaaa tcatcggcac gaacggtgaa
    12001 ataagttgca taaaaatata gtggataatg tactttgaaa taagcaatcc ggactgccat
    12061 taaaacgtaa gcggcagcat gggctttagg gaacatgtat ttgatttttt tacaagattc
    12121 aatgtaccaa agtggcactt tattcgccat cattgcttct tccatttctt ccgttaagcc
    12181 tttcccttta cgcacagact ccatgatctt aaaggctaat gaactttcta gcccttgata
    12241 aattaggaaa accataatat catcacgaca accaattaca tctggcagtt cgcatgtttt
    12301 gtttttgatt aattcttccg catttccaag ccaaacgtcc gtcccgtggg aaagaccaga
    12361 gatttgtact agctcagaaa atgttgttgg tttagtttgt tctagcattt gtcttacaaa
    12421 acgcgtccca aattcaggga ttcctaatgt tcctgttttt gaatcaatat ctgcagactt
    12481 aacaccaagt gactctgtag acccaaatag tttcatgaca tctggatcat cggttggaat
    12541 cgtttttgga tcgataccgc ttaaatcctg taacatccgg atagcagtcg gatcatcgtg
    12601 tccaagtata tctaatttta atacgttatc atgaatcgaa tggaagtcaa aatgggtcgt
    12661 tttccattct gagtccgtcg catcagctgg gaactgcacc ggtgtaaaat cgtaaacatc
    12721 catataatct ggaataacga taataccacc tggatgttgc ccggtagttc gtttaacgcc
    12781 tgtacaccca gcgacgagtc gatcaatttc tgccccgcga atagtcatat tcatatcgcg
    12841 ttcataattt cgaacataac caaaagcggt tttctctgca acggtaccaa tcgtccccgc
    12901 acggaaaacg taatcctcac caaaaatttc ttttgtataa gcatgggcta ccggttgata
    12961 atcccctgag aagttcaagt caatatcggg tactttatcc cctttaaatc ctaagaaagt
    13021 ttcgaaagga atatcttggc cttctttttg ataaggggtt ccgcagtgcg ggcaattttt
    13081 atccggtaag tcaaaaccag aaccaaccga accatcatca aagaactcag aatccttaca
    13141 attcgggcaa agataatgtg gtggaagtgg gtttacttcg gtaatttccg tcattgtagc
    13201 aacgaaagaa gaaccgaccg atccccgcga accaaccaga tagccatcta caagtgattt
    13261 cttaacaagc ttatgtgaaa tgagataaat aactgcgaaa ccatggccga taatactttt
    13321 cagctctttt tctagtctag cttccacgat ttctggcagt ttctcaccat aaagttgatg
    13381 tgccatcgca taactcatat ttcgaacttc gtcttctgca ccatcaattt ttggtgtata
    13441 taattcgtct ttgattggtt taaggtcttc catccaatca acgactaaat tcgcattagt
    13501 tacaacaatt tcttttgctt tttcttcacc aaggaaggca aattctttca acatttcatc
    13561 cgttgtacgg aaatgaacat caggtaattc agcccgatta agcggatttg ctcctccttg
    13621 cgaatggatt aaaattttac gataaatttt atccactgga tctttgtaat gtacattacc
    13681 tgttgcaacg acaggttttc cagttttctc accgacgcgg acgatatttt tcaatatttc
    13741 ttctaaagct ttttcgtcac gaactagttc acgttcaata agcggtgcat aaactggctt
    13801 cggttgaact tcgatgaaat catagaactc cgctactttt tctgcagctt gcatcccttt
    13861 ttgcatcatt gcttcaaata attctccttg gctacaagca gttccaataa ttaagccttc
    13921 gcgtaatttt tttagctgag agcgaggaat acgaggcaca cggtaaaagt aattaatatt
    13981 ggacatcgta attaatttaa agagattctt caaaccaaca gccgtttgtg cgtaaattgt
    14041 ggcgtggaat ggtcgcgcgc gcttgtatgc gtcgccttct cccatatagt catttaaaga
    14101 atcgtgaaaa tcgatgttgt gcatttcttt cgcatcttta attaacttcc aagccaaata
    14161 cgctgtagct tccgcatcaa aaacagcccg gtgatgttgt tcaagaataa tattgaattt
    14221 ctttgtcaaa gtattcaagc ggtgattttt aaaatgtggg taaagaaaac gtgctaattc
    14281 taatgtatcg acaaccgcat tttctgcttt ttctagtcca actttttcat aagcagtgtt
    14341 aataaaaccc atgtcaaaag aagcattatg ggccacaaga atatcatcac cgctccattc
    14401 tttaaatctt tttaaaacaa catcaattgg atcagaacct tttaccatgt catctgtaat
    14461 accagttaaa ttaatagtgg ttgcagaaag cgggtgtcca ggatcaataa aagcttcaaa
    14521 tttatcaata atttcaccat ttttcatttt tacgccagca agttcgataa tcgtatcata
    14581 aacggcggat aaacctgttg tttcaacgtc aaatacgcaa tatgttgcat cttccaaagc
    14641 aatatgttga tcgttataag cgattggcac accatcatct ataagatttg cttcgatgcc
    14701 aaaaataacc tttaagccat acttttgccc tgctccatac gcttctggga aagattgggc
    14761 aacagagtga tcagtaatag caatcgcttt atgtccccaa tcagcagctt gtttgaacag
    14821 tgaatcaaca gatgaagtgg catccatttg actcattgga gaatgaagat gtagttctgc
    14881 gcgtttttct tcagcagtat caagacgctt cactccagcg atttcattga catcttgcgc
    14941 catcatgatt aagtcccgca cgaaagtatc gttttgaacg cttcctctaa ctttaaccca
    15001 catacctttt ttcaaattct ggaacatcgc cgcatcctcg ttatcacgag aaaacatttt
    15061 tataatcatt gaacttgtat aatcagtaat tttgaattgt aacaaactac gaccactgcg
    15121 aagctctcta atttctgtcg cgaagattaa gccttgaacg gtaatacgtc gctcctcatc
    15181 ataaatgtcc ccaagacgtt taacttcttc atcgtcttta attttataac caatttggaa
    15241 cggaccagtt agtggagcag ctccaccgcc accgctttgc ccttctgctt gtcgtttttg
    15301 cataacttgc acagcttcag cggctttttt ctgatcttct tcttgtttgg ccagtgcaaa
    15361 agctttatat tcctctgttt cagactggtc aagcaagtgc attttcatgg caaggcgtgg
    15421 aaatccagct ttcccgtaac tttcaataat tttcgtctgg aatcgttgct gaatagtcgc
    15481 ttcttccatg tcattatgaa ccgctacttc aataaaatga ggttctttaa atgtaggttt
    15541 ttgctccatt aaaagctttc caatcatcgg tgactgcttc ccaattggct ctacgattaa
    15601 gttccaataa tcctgaatga gtgtttcgtc aattgtttga ttttctggaa caatttgcat
    15661 ttctgtttcc gcaatttggc tgaacgcacg cttcattcca acatccatca tatggaaaag
    15721 tgctgctgga aaaatttgtg gaacgtgtaa atgaaattgc catgttttat ttttcttgtc
    15781 ggcaacgagt ttttcgattt tagcatcttt tgtaaattct tcgtaagttg ttacatcttg
    15841 taaaccgatt tgtgtcatta acagctgaaa tcgttcttgt ttttcttcct cttttgcagt
    15901 cattccgaat aacacccctt catttaaatt tataaaagcc agatgtccct cataacccgt
    15961 ttttatagga acgagtgaag tttcatctgg cacgaattgc tcaataaatt atttatctcc
    16021 aaagagtata ggcagcgtgt ttagtaactc atcttgacga acttcaatca tttcgccagt
    16081 ttttctgatt ttcacttcaa ctacgccttc tgctgctttt ttacctactg taatacgaat
    16141 cggtaagcca attaaatctg catcagcaaa tttaactcca gcacgctctg cacgatcatc
    16201 gattaacaca ctgaacccag catcttgtaa agagctataa agtgtttcgg caaaagcaac
    16261 ttgctcttcg ctcttcacat taacgggaat taaatgtaaa tcaaatgggc taatttgttt
    16321 atcccaaaca aaaccatttt catcatttga ttgttcagca atggcagata aaatacgtga
    16381 tacgccaatt ccgtaacaac ccataataat tggctgtgct cgaccatttt catctaaaat
    16441 agttgcattc attgcttcac tatacttcgt tccaagtttg aaaatatgcc caacttcgat
    16501 gccttcagca aacttgatta cgccttgacc atctggagat aaatcaccaa cttgaatcat
    16561 ccgtaaatca aaatagctag taacggagaa atcgcgatct ggattcacgt taatataatg
    16621 gaaaccatct tcgtttgcac caactaccgc attaacgata tctttcacag cattatctgc
    16681 aaagacgcgc gtgttttcag gaacattgat tggtcctagg gaaccaaaat tagctcctaa
    16741 tagttcaaca gcaacagctg gatccactaa ttctacattg gttgcatcta atgcattttt
    16801 gattttaata tcatttactt catggtcacc gcgaacgaga accattatga cttcatcatc
    16861 gacttgataa agcatcgatt tcattgtttt ttcaattggt acttctaaaa actcaacgat
    16921 atcagcaatc gatttttgat caggagtcgc aactttctcc atatcttttt ctagttcatg
    16981 cgattttttc tccatatata aaactggagc catttctgtg ttggcagcat aatcggaagc
    17041 atcgctataa gcaattgtat cctcgccaat atcagataat gccataaatt cttttgattc
    17101 attcccaccg atagaaccag aatccgcaat aacagaacgg aactcaagac cacatctagt
    17161 gaagatattc gaataagctt ggtgcattaa gttatacact tcatccaaac tttcactggt
    17221 tgcgtggaaa gaataggcat ctttcattat gaattcgcga ccacgtaata gaccgaagcg
    17281 tggacgtttt tcatcccgga acttagtttg aatttggtat aaagtaagcg gcaaacgttt
    17341 gtaagattta acttcatcgc gtaaaagtgc agttataact tcttcatggg ttggcccaag
    17401 cgcaaagtcg cgagaagcgc ggtcttttag gcgcattaat tctgggccgt aatcgttcca
    17461 gcgaccagac tcctgccaaa gttccgcagg ctgaagcgca ggcattaaca gttctgcagc
    17521 gccaattgct tctagctctt cacgaataat tgtttcgatt tttcgtaaca tcaatgttgc
    17581 aagtggtaaa taactataaa tcccactagc cgtttgtctt ataaaaccag cacgaagaag
    17641 taattggtga ctctttactt ctgcatccgc tggtacttct tttaatgttg gtataaatgt
    17701 catcgtttga cgcatttaaa acaccccttt ttccctttat tagtctatct cttttttaga
    17761 aaaatgcacg ttgaatatcg ttccatgtca caagaatcat cagaaccatt aaaagtgcaa
    17821 atccagcaaa atggataatg ccttcttttt tagggtcaat tggtttgccg cgaacgagtt
    17881 cgtataagaa gaacattaaa cgtccgccat ctagtgctgg taacggtagt aagttaacaa
    17941 ttcctaagtt aatacttaaa acagccgtcc agtttagtac agtcataaag ccatattgaa
    18001 cgacttgttg cgtacttgtg taaatcccta ctgggccatt tagcatatcg agcgaaaatc
    18061 cgccagtaaa catgtttcct agaatcgtaa atatttgtac aatccaattc catgtttgcg
    18121 taaatccatt cgtaatttta gcagtaaaag aggagtccat tggtgtctct acaccgattt
    18181 ttcctacgtc tttgccattt tctttttgtg ttgcgggttt gacatcgata tcttgtgtct
    18241 tgccatctcg ctcaattttg aagtcaagtg tttttccggg gttttccgaa acactttgaa
    18301 caatatcggt ccaagatttc gtttcttttc cattgatgga aagaacctca tccccttttt
    18361 ttagaccagc ttcagcagca gccccgtccg gtagaacatt cccaagcgta ttatcggtgc
    18421 ttggaacgcc cccttgtaca aaagcaagtg ctgtgaaaat taaaatagct aaaataaagt
    18481 taaaaagcgg tccagcaaaa atggtcattg cccggtttcc taatgattta gcattaaaag
    18541 aacggtcata tggcgtaatc atcgtttcga ttttatcatc aatcactaag gcatcacgct
    18601 ctacctgata gcgaactttc ttggtgtcat cgtaatcttc gtagccttca atgaaaagtt
    18661 ctttctctaa atcacagaga gaaacttcta ttggctgcgc gtttacatat tgatctttac
    18721 cattaacaat gattttgcta accgtttctt ccggagttaa ttctagccct actcggtaac
    18781 caggttttag ctcgatttcc tcgccatctt ccccagccat ccgaacgtaa ccaccaatcg
    18841 gcaataagcg aatcgtatat tgcgtttctt ttttacgata agcaaaaatt ttcggtccaa
    18901 aaccaattga aaagtctttt accataattc cagcacgttt tgcaaaaaga aaatgtccta
    18961 gttcatggaa aaatacaatc agtccgaata cgaaaataaa agcaataata gttgtcaaaa
    19021 tagcttcacc tctataaaag tgtctttaca tacgcgcgtg tttcttgatc gacttgtaaa
    19081 atggtatcca agtcagggtc agaaatgcta gtatgacgat tcattgcatt ctcaacaagt
    19141 gcttcaatat tataaaaagc cacctgtcca tttaaaaagc cagccacagc aatttcattt
    19201 gccgcattca aaactgtcgg cattgttcca cctattttac cagcattata cgcgagtttc
    19261 aatgccggaa atctttcata atccactttt tcaaaatgaa gtgcggaaaa atcagtaatc
    19321 cggaattctt tttcatacgg tatataaagt ctgtcgggat aggttaaagc gtattgaatt
    19381 ggcatccgca tatctggtgt accaagttgc gcaatgaaac ttccatccac gaactgaacc
    19441 atagaatgga taatactttc gcgctggata acgacttcta tatcatcgta gtccacacca
    19501 aacagccagt gcgcctccat cacttctaaa cccttgttaa acatcgtcgc tgaatcaatt
    19561 gttaatttat tccccatatt ccagttcgga tgttttaacg cttctttcac cgtaacctcg
    19621 ctgagttgtt ccctcgtctt atctcggaaa cttccaccgc tcgctgtcaa aactagtttt
    19681 tcgattcttt ccgtattttc tccgtttaat gcttgtaaaa tagcagaatg ttcgctatca
    19741 acaggtaata gtgaaatgtt tttttctttc gccgcacgca tgactaaatg tccagccgta
    19801 acaagcgttt ctttattagc aattgcaatg gccttcccag cttcgattgc atctaatgtc
    19861 ggaagtaagc caacgctccc cataactgca tttaaaagca catctccatc taaataggtc
    19921 gctacttctc taagcccttc taaaccatta aaaaatttca cgtttgggaa ttctgcttct
    19981 aatatcacac gatctctcgt atgccaaaca gcgaccattt tgggtttaaa ttcttttata
    20041 atcgccctac cacgttccat attacgccca aaactaagcg caacaatttg aaatttttca
    20101 gggttttcgc gaatgattgc aagcgtttgt gttccaatag aaccagttgc acctagcaaa
    20161 ataatttttt tcattatccc atctccaatt aaataatttg aagtatatgt agcagaggta
    20221 aaacgaacaa caagctatca aagcggtcta aaataccacc atgccctggt aagattttcc
    20281 cagaatcttt tacaccataa aagcgtttca aagcagattc gaccaagtct cccaactgtc
    20341 caaaaataga aagaaagact aaaagcgcta gtacgagtgc aatatttcct ggtagctcag
    20401 caaaataata aaagccccca gcaatgacaa gtgcacatac aatcccgccg ataaaccctt
    20461 ccaccgtttt gtttgggcta acattcggag ctaatttgtg ttttccaatc gcttttccaa
    20521 taaaataagc ccctgtatca gttgaccaaa caataaataa agcaaaaagt acatacatta
    20581 acccagcttc acgagttaat gccaagtaat ggaaaccaaa tcctgtataa aaagcggcaa
    20641 ccatacaaat accaacttga tcaaaatgga atttatttcg tgaaaataca gtattagcga
    20701 gtaataaagc cattaaaata aaaataactt ccatttcagt aatatgcagt gtttctaaaa
    20761 agtccaaata tctatctggc acgacaacta accacattaa tagtaaagta attattccat
    20821 tcatcgaaaa aattcgttgt tttgtcatta caagtacttc atataaagca atcgttgcta
    20881 gtaaaatact taatagttca aatggaattc ctccgtagac aacgaatgga ataaaaaata
    20941 taagcgcaac aactgcagta ataattctcg ttttcaatct tttttcctcc ctagagccct
    21001 ccaaaacgac gtgaccggtt ttgatattca ataattgcct gtaaaaaatc ttcttttgaa
    21061 aaatcaggcc aatgtgtatc cgtaaaataa aactcactat acgccagttg ccatagcata
    21121 aaattactta atctaagctc cccactcgtc cgaatcaaca agtcaggatc acccaaaccg
    21181 ctactcatca aatgatcatt taatttttct tctgtcagat catctgcact tttcccttca
    21241 aactctaatt ctttcatcgc ttctttggca gcagtaataa tttctgaacg tccaccgtag
    21301 ttaagtgcaa agttaagcgt aagccctgtg caatgcgctg tatcagctat ggctttctct
    21361 acggcacgca tcgtatgatt aggtaaattt tctctgtacc ccatcacatt aacacgaaca
    21421 ttttcttcaa tcaactctgg tacaaaagag tcaaaaaatt ctacaggaag tttcattaaa
    21481 aaatccactt catctgtagg tctcttccaa ttttcagttg aaaatgcata aagcgttaaa
    21541 acatcgatgc caattgcatt agcataacgt gtcactcgct ttacgacatc cataccttct
    21601 ttatgcccag caatgcgcgg caaaaaacgt ttcttcgccc accttccatt cccatccatg
    21661 ataatagcta catggcgcgg gataggtaaa tcttctgcaa gttcactatt taatatattt
    21721 tcatcttgtc gaaatagctt tttaaacatc ataaatcctc caattgatac acttcttaga
    21781 gcatgtctat acctataata acaaaaaaga atcaattaat gtactaaaaa ttccatgtga
    21841 acagatgaga gtttcatgag agcgatggaa ttgcccatta aaaaacattc ctaacccaac
    21901 acatatggaa agaattagga atgtcgcttc aacttaaaag gtgtttaacc ctatttgtta
    21961 ctatttgtaa aagtatcaat taaacttcta agatttccgc ttctttgtct ttcgtgatgc
    22021 tatcgatgtt cttgatgctt tcatctgtta atttttgaac gtcttcacca taagaacgca
    22081 aatcatcttc tgtgatgtcg ccattttttt ctagtttttt caattcttca ttagcttcac
    22141 gacgaatgtt acggacagca actttcgctt cttcagcttc ttttttcact tctttaacca
    22201 actctttacg acgttcttcc gttaattgtg gaatagataa acgtagcaca gaaccatcat
    22261 tatttggagt caaacctaaa tctgatttca aaattgcttt ttcaatttca cctaaaatag
    22321 ttttatcgta aggtgtaatt agtaacattc tagcttcagg aacgctgata gaagccattt
    22381 ggttcactgg agtagctgct ccgtaataat ctacagataa acggtcaagt aatgatgcat
    22441 tcgcacgacc agcgcggatt gtacctaatt gtcttgttaa tgcttgttct gctttttcca
    22501 ttttttcttt ggatttcgat aatacttctt tactcattat tttttccccc taacagtagt
    22561 cccgattttt tcacctaaaa taacacgttt aatattattg ccttgttctg taaacgagaa
    22621 gacgattaat ggaatatcgt tgtccatact tagagaggac gcagttgtat ccataacttc
    22681 caatccttct ttaatcacat caaggtaaga taactcttcg tattttttcg cattttcatc
    22741 tagttttgga tcagcattgt agacaccatc tacattattt ttcgccatta agataacatc
    22801 tgcttcgatt tcagccgctc taagtgctgc cgctgtatct gtggagaagt atgggttacc
    22861 tgttccacct gcaaaaataa cgacgcgacc tttttcaagg tggcgaatcg cttttcgacg
    22921 aatgtacggc tcagcaattt ggcgcatatc aatggaagtt tgcacacgcg ttgctactcc
    22981 aatgttttca agggaatctt gtaaagacaa ggaattcatg atagtcgcaa gcatacccat
    23041 ttggtcggcc gctgcacggt ccattcccat ttcactacca agtttaccgc gccagatatt
    23101 cccgccgcca acaacgatag ctacctctac tcctagttct actacttctt tgatttgagc
    23161 agaaatcaaa ttgaccacgc tcggattaat tccaaagcca tcatttccgg caagtgcttc
    23221 accgcttaat tttaatacaa ctcgtttata atctggggta tccataatag cctccatttt
    23281 catattctat tcatagatag aagagttttc catccaccat tatctattct actaaaaagc
    23341 tggctattac aaaagtgttt tctaccaaaa aataaaaaaa catttaaatt ta
//
LOCUS       DABQVC010000019        23114 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.019,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000019 DABQVC010000000
VERSION     DABQVC010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23114
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.019"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            111..260
                     /gene="rpmG"
                     /locus_tag="IBJ56_000508"
     CDS             111..260
                     /gene="rpmG"
                     /locus_tag="IBJ56_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HAM3416792.1"
                     /translation="MRVNITLECTECGDRNYITTKNKRENPERIELKKYCPRLRRVTL
                     HRETK"
     gene            316..855
                     /locus_tag="IBJ56_000509"
     CDS             316..855
                     /locus_tag="IBJ56_000509"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HAM3416793.1"
                     /translation="MEDKRLIREKILRNLNSLDRVEHRERSIRLAEKLFLLPEWENAK
                     VVGITLARHPEIETEAIILQAKKEGKTILIPKTYYPSKKMEFKKMDSIHPLIKSKFGI
                     LEPNELAETVDKKVIDLLIVPGVAFNKDHYRIGFGGGFYDRFLTDFQGHTVSLYLYEQ
                     QIEFTPEKHDEPVSILIGG"
     gene            954..2492
                     /locus_tag="IBJ56_000510"
     CDS             954..2492
                     /locus_tag="IBJ56_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HAM3416794.1"
                     /translation="MSFQEQYVFWRLTNYFLGVEKYRLIHLHEEKQELWLENTSQKKR
                     PVIRIQMKELSWANVVERDVTHTLHVTENLRKQMGRLKLPLVNIYITPFEPMGDISPF
                     FGQSIASPNEKVKLENILLANEQMRDHLDTLVKTLELPEEAFVLPNEITKELVAKERE
                     QVIAYITTKVNEEQKVARNSKPIVTYTFIGLLVVAFLWLSFQGGTTNSFNLIKWGGKF
                     NPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLGGIC
                     GNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIGVSIASLVAINLLIDV
                     FSSQIDIAGHIGGLVGGFLLAGALSLPKQFFHWRRLAYGISLFGVAVLFLYFGYQKGE
                     QPYDPMQANVAVQQYLQEQNKKEATKITDNLISSGSADGYSYTYAASIALQDKQIDKA
                     ETMAKEAINIDKDIPEAHYYLSVCYRVKGDMPNAIKEANSARELSSNPFFDSYYDELE
                     KIKE"
     gene            2505..2717
                     /locus_tag="IBJ56_000511"
     CDS             2505..2717
                     /locus_tag="IBJ56_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgQ family protein"
                     /protein_id="HAM3416795.1"
                     /translation="MKTVYDVAQLLRKHGIIVYLGKRQYDIEMMEYEITELFKHNILD
                     RETFARARSILKQELIKEQRKNSSLN"
     gene            2742..3710
                     /locus_tag="IBJ56_000512"
     CDS             2742..3710
                     /locus_tag="IBJ56_000512"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HAM3416796.1"
                     /translation="MNKKLIGVDLGGTTAKLAILTKEGDIEEKWTIDTNIEDKGAHIV
                     KNIGDSINQKLTDLQLDNDIFYGIGMGTPGTVNYETGTVKGAYNLGWADEQNVSQDLE
                     NITGLKIILDNDANVAALGERWKGAGEGGANVVFVTLGTGVGGGIFAEGKILHGIRGA
                     AGEIGHVTVVPENGYDCTCGKKGCLETVASATGIVRVAKDLAKEYTGKSALKDAINND
                     ETITSKLIFELGAEDDALANETIDKISFYLALALSHIGNMLNPEKIIIGGGVSAAGDQ
                     LLTPVKTYFETMVFPAVKESTKLSIATKGNDAGIIGAAWLALPSED"
     gene            3850..4941
                     /locus_tag="IBJ56_000513"
     CDS             3850..4941
                     /locus_tag="IBJ56_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416797.1"
                     /translation="MKKSNVFLLITLLVGLVFISFGCSEEKETPKKTAKEVQGVQIKT
                     KEFQRVVGWLSKDSVLLQTKKSGVTYFEELNIYNEKKRPIFNTKESISEVQISPDYRN
                     ILLYSAESAEKATMRIIALNDGSTVASRSTKPLTTTFYWNDESPEKIMFVSYSPEWNF
                     QIENWDYTLSQLDKIDVTSPFISWYGDNLVISNNKDKPDDELGNLYLQDIRDNATKNL
                     IVANIMQFAVHDNVLLTIEKNSDEKLLYDFRTLGFQNFFSYNAAREYDELGTFVPYFD
                     TNFDKNTFLTFVPYKSAKIGSGAKEYKLVKIDPTNKKESTILELMDNQPILSYEKGDL
                     VLYGYLFDKVIDTKTGKMYNLINTPTKSF"
     gene            complement(4959..5276)
                     /locus_tag="IBJ56_000514"
     CDS             complement(4959..5276)
                     /locus_tag="IBJ56_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComG"
                     /protein_id="HAM3416798.1"
                     /translation="MKTNAFTLPFTIFIALISILIVTGTASIFKTQIQYEKMIQNYYL
                     ASTKLNLAFIEIKETTSLSHQFKINFKGAKIDCQATDNQLTEFNCQITLENGYTLAKT
                     TSP"
     gene            complement(5273..5740)
                     /locus_tag="IBJ56_000515"
     CDS             complement(5273..5740)
                     /locus_tag="IBJ56_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComGF family competence protein"
                     /protein_id="HAM3416799.1"
                     /translation="MQKINRKKNVSFRNGSPAFTLLETILSITIILSISSLIPLFFQC
                     YNKTIQISNIDQTTEWQLFLIQTRLELEKATNIQIDRNKLSFSNGKDLITYSKYNDLV
                     RRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP"
     gene            complement(5703..5987)
                     /locus_tag="IBJ56_000516"
     CDS             complement(5703..5987)
                     /locus_tag="IBJ56_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HAM3416800.1"
                     /translation="MNKINGFSLVESMVSLLLFSMVCSFLLPTAMTIFEKLDYQKETS
                     RVYQEIYEHSELLRHKSVPVNFKDERIESFHYQGGIQICAKNKSEEKCIF"
     gene            complement(5980..6402)
                     /locus_tag="IBJ56_000517"
     CDS             complement(5980..6402)
                     /locus_tag="IBJ56_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HAM3416801.1"
                     /translation="MKINGFTLLEMLLVLTISFTLITLTIFPISSTLSTLREKQLLEE
                     IKATIYYAQINAVATKQDTFISFDPMRNQLITYTNSKTLAILPFSQTLTLTQPKIGNF
                     RFSSTDGSINRFSTIHLTSSTNNYKLIFQIGKGRFRIE"
     gene            complement(6399..6722)
                     /locus_tag="IBJ56_000518"
     CDS             complement(6399..6722)
                     /locus_tag="IBJ56_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAM3416802.1"
                     /translation="MFKKKIDWRDERGFTLVEMLIVLLVVSVLLLLTIPNIVSQSKSI
                     NDKGCEAFISMVQGQVQSYQLDKNSIPSVADLVSGGYLKANQKSCPNGNSIKIDSSGN
                     VSEKK"
     gene            complement(6737..7768)
                     /locus_tag="IBJ56_000519"
     CDS             complement(6737..7768)
                     /locus_tag="IBJ56_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HAM3416803.1"
                     /translation="MVFFQRTNWKEDGEFLIRVASLLEKGFSLDATISYLSITSPKYR
                     KRYEQIITSLANGNSFSYALSKNGFPEFICSQLHYASSHGYFLQTIHETGVHMKRKAE
                     EKNALMKTFQYPLVLFSTVILVFFLLRIFLLPKFELLFTQLSTNGTVGTKFTYFLLEK
                     IPVLLGIFLLSLFLIFSFLIRKQKQKNAYDRAYFYCRIPYIRQFSRIHYSQYLSRELG
                     YLLKSGLSITHIMHLFAQEESPAFFQAIARQILPTLEQGLSLTKALEKMPIFERELYY
                     IAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIYLSILY
                     PMFSMVNQI"
     gene            complement(7746..8768)
                     /locus_tag="IBJ56_000520"
     CDS             complement(7746..8768)
                     /locus_tag="IBJ56_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HAM3416804.1"
                     /translation="MPQKMTEHIITQALRVHASDVHIHPLSNRYLLRLRVNGTLIPLL
                     YLPIDVGEKLISFLKFQAALDISEKRRPQSGSFEKNTNTEKIAIRLSTMPSKDFHESM
                     VIRIFRYKYPIPFLKSSVFPRSTNQIQQQCKNQTGLFLFSGSTGSGKSSSMYSLVSSI
                     ENKDEMQIITIEDPVEHHSPGFLQIEVNEKASITYAPIIRSVLRHDPDILIIGEIRDA
                     ETAKIVVRAALTGHLVLSTVHAGDAYGVLLRLLEFGISSEELAQCLLGISFQKLTHLV
                     CTFCGEKCHPFCTHLHRKRTAIYEVLTQQEIKAYFQSNKQQIKPKYPIKRTFEKGVAY
                     GFFSAH"
     regulatory      9132..9223
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            9307..10395
                     /gene="gcvT"
                     /locus_tag="IBJ56_000521"
     CDS             9307..10395
                     /gene="gcvT"
                     /locus_tag="IBJ56_000521"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HAM3416805.1"
                     /translation="MTELLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEAVRT
                     DAGLFDVSHMGEILVKGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVV
                     YKKSETEYILVVNAANTDKDFEWMVKNIRGDVSVTNVSSEYGQLALQGPNAEKILAKL
                     TDVDLSSISFFGFVEDADVAGVKTIISRSGYTGEDGFEIYMPSADAGKVFEAILAEGV
                     APIGLGARDTLRLEAVLALYGQELSKDITPLEAGLNFAVKLKKEADFIGKEALIKQKE
                     AGLNRKLVGIELIERGIPRHDYPVFLNEEEIGIVTSGTQSPTLGTNIGLALIDTAYTE
                     IGQEVEVGIRNKKVKAKIVPTPFYKRAK"
     gene            10411..11757
                     /locus_tag="IBJ56_000522"
     CDS             10411..11757
                     /locus_tag="IBJ56_000522"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HAM3416806.1"
                     /translation="MAKHRYLPMTEQDEKEMLDVIGVKSIDDLFQDIPEKIRFKRDYD
                     LKPAKSEPALLRELSKLASKNANTTEYASFLGAGVYSHYIPTVVDHVISRSEFYTAYT
                     PYQPEISQGELQAIFEFQTMIAELTGMDLANSSMYDGGTALAEAAMLASGHTKRKKIL
                     ISGAVHPESSNVLKTYATGQHIEVEVIPELDGKTDIEALKKALSDDIAGFVVQYPNFY
                     GQVEPLAELEKLVHENNSLLLVSSNPLSLGLLTPPGEFGADIVVGDSQVFGIPESFGG
                     PHCGFFAVTNKLMRKVPGRLVGETVDENGKRGYVLTLQAREQHIRRDKATSNICSNQA
                     LNALASSVAMATLGKTGLVEMAKQNLDKSHYAKQKFREKGFEVLFSDGFFNEFVVKLS
                     KPIKEVNESLLDEGIIGGYDLGFYEEKYENHMLVAVTEMRTKEEIDAFVASLEGAK"
     gene            11754..13220
                     /locus_tag="IBJ56_000523"
     CDS             11754..13220
                     /locus_tag="IBJ56_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase subunit 2"
                     /protein_id="HAM3416807.1"
                     /translation="MNLEETMPLVFERSIPGRIGFSLPESDVPETKASDYFEQAYIRS
                     VPADLPELSELEIMRHYTNLSNHNFGVDSGFYPLGSCTMKYNPKINEKVARFPGFANI
                     HPNQPESSVQGALELLYDLQTSLVEITGMDEVTLQPAAGAHGEWTGLMLIRAFHEKNG
                     DTKRTKVIIPDSAHGTNPASAAVAGFDVVTVKSNEKGLVDVADLKKVVGEDTAALMLT
                     NPNTLGLFEKDIVEMAEIVHEAGGKLYYDGANLNAIMAKVRPGDMGFDVVHLNLHKTF
                     TGPHGGGGPGSGPIGVKKELIPFLPTPVLTKKEEGYSFDYNYPDSIGRVKPYYGNFGI
                     NVRAYTYIRTMGPDGLKLVTEYAVLNANYMMRKLQEAYDLPFDQVCKHEFVLSGNRQK
                     KLGVRTVDIAKRLLDHNFHPPTVYFPLIVGEAIMIEPTETESKETLDSFIDTMLKIAK
                     EAEENPEIVQEAPHSTYVKRLDETRAARKPILRYQKEV"
     gene            complement(13260..13640)
                     /locus_tag="IBJ56_000524"
     CDS             complement(13260..13640)
                     /locus_tag="IBJ56_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HAM3416808.1"
                     /translation="MISWIIAIIILVILLGYEIYQFVMRRKAVKVLTEEEFKKGYRKA
                     QLIDVREPNEFDAGHILGARNIPVTQMKNRTTEIRQDLPVYLYCQTAQRSNRAAIMLY
                     KRGYKQVYQLKGGYRKWTGKTKSK"
     gene            complement(13702..13974)
                     /locus_tag="IBJ56_000525"
     CDS             complement(13702..13974)
                     /locus_tag="IBJ56_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416809.1"
                     /translation="MKKYPLIVIILLALVGIGLLMGGFKSFFTLIISVLIGALIFTLL
                     LRFFTNRKTDSNYQKAVKQSKNLHDPKKKTKKKRKSSFKVIDGGKK"
     gene            complement(13987..14952)
                     /locus_tag="IBJ56_000526"
     CDS             complement(13987..14952)
                     /locus_tag="IBJ56_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1385 domain-containing protein"
                     /protein_id="HAM3416810.1"
                     /translation="MSKQNVPSYGGQAVVEGVMFGGRKQTVTAIRRIDGSLEYFYLEK
                     NSPVWVMRMKKIPFLRGIVALIESSAIGSKHLAFATDRYDEDPNNPVEEEKIEKKESK
                     VAMWLGVAVIGILSFVFAKFVMTLIPVFLAELFRPIVPGDTAQVFLESLFKLILLLTY
                     IFAVSQTPIIKRVFQYHGSEHKVINCYEEKLPLTVENVQKQSRLHYRCGSSFILFTVI
                     VGMFIYLLVPTDPLWLRVVDRILLIPVVLGVAFEVLQLTNKCRNIPVLKYLGVPGLWL
                     QLLTTKEPSDDQVEVAIASFNELLRVEKEGAPVDVTEPDNLELLE"
     gene            15132..16193
                     /locus_tag="IBJ56_000527"
     CDS             15132..16193
                     /locus_tag="IBJ56_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HAM3416811.1"
                     /translation="MSKLTKIQETLGKEKIEAVLVTSEFNRRYVSGFTGTSGVALILP
                     EKAYFVTDFRYTEQAAKQAEGYEIVQHTGPIFDTVEDLLIKNDTKTLHFEADYVTVSE
                     FKQMERVFNRQLIPLTGFFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAE
                     IEVSNELEFFMRRAGATSSSFDTIVASGVRSALPHGVASDKKIEVGDFVTMDYGCYYD
                     GYCSDMTRTIAVGEPAEKLKEIYQITLDAQLKVIDSLKPGMTGIEADAIARDYIASFG
                     YGDAFGHSLGHGIGLEIHEGPNLSFKSPQKLEVGHVVTDEPGIYLPGIGGVRIEDDLL
                     ITETGNEILIHSPKELIIL"
     gene            16296..16853
                     /gene="efp"
                     /locus_tag="IBJ56_000528"
     CDS             16296..16853
                     /gene="efp"
                     /locus_tag="IBJ56_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HAM3416812.1"
                     /translation="MISVNDFKTGLTIEVDNGIWRVLDFQHVKPGKGAAFVRSKLRNL
                     RTGAIQEKTFRGGEKVAKAQIDNRKMAYLYADGTNHVFMDNESYEQIELPEDQIAHEL
                     KFLKENMEINIIMYQGETIGIDLPNTVELVVTATDPGIKGDTSSGGSKPATLETGLVV
                     QVPFFVNEGDKLVINTTEAAYVSRA"
     gene            17012..17491
                     /gene="accB"
                     /locus_tag="IBJ56_000529"
     CDS             17012..17491
                     /gene="accB"
                     /locus_tag="IBJ56_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HAM3416813.1"
                     /translation="MLSIDEIKQLIELIDESTLDEFELETKDSKILLKKNKTVVAAAV
                     QEAPIAITQAPAQAAPVAQAQTAAPQTEANTAEDASLEVITSPMVGTFYASASPEDAN
                     FVSVGSKVSAQSVVCIVEAMKLFNEITADIDGEIAEILVSSGELVEFGQPLFKVRKK"
     gene            17505..18869
                     /gene="accC"
                     /locus_tag="IBJ56_000530"
     CDS             17505..18869
                     /gene="accC"
                     /locus_tag="IBJ56_000530"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HAM3416814.1"
                     /translation="MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADKEALHIQL
                     ADEAYCVGPAATKDSYLNMSNIISLAVLTNCDAIHPGYGFLAENADFAELCEDCNITF
                     IGPSASAISQMGTKDVARETMRKAGVPIVPGSQGIVKDVEDGKKIAKKIGYPVIIKAT
                     AGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNH
                     GNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEF
                     IFDHHENNFYFMEMNTRIQVEHPVTELVTGVDLVKQQFLVASGEELQIKQADVKLTGW
                     AMECRINAENPEKNFMPAPGEIKFYLPPGGLGVRIDSAAYPNYKIPPYYDSMIAKVIC
                     YAETREEVIQKMKRALSEFAIDGIPSTIPFHLRVLDNDVFLSGDFNTKFLEQNDVMNL
                     SKEG"
     gene            18873..19280
                     /locus_tag="IBJ56_000531"
     CDS             18873..19280
                     /locus_tag="IBJ56_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HAM3416815.1"
                     /translation="MAYTKDLRKQNDAPLGKIEIAPEVIGVIAGLAASEIENVAYMQG
                     GFATEMREKFSGAVNYRKGVKVELTEEGILIELYCSVLFGATIPLVAQNIQDAVRDTI
                     FNMTGLNVLEINVHIVGVQFEKTETLSFDDFEL"
     gene            19311..19697
                     /gene="nusB"
                     /locus_tag="IBJ56_000532"
     CDS             19311..19697
                     /gene="nusB"
                     /locus_tag="IBJ56_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HAM3416816.1"
                     /translation="MKRREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEKLV
                     EGVMANKAEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIE
                     IAKIYSDEKSSKFINGVLANIAPEDK"
     gene            19794..20648
                     /gene="folD"
                     /locus_tag="IBJ56_000533"
     CDS             19794..20648
                     /gene="folD"
                     /locus_tag="IBJ56_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HAM3416817.1"
                     /translation="MGEIIDGKKLAKEIQEKVTREVAELVKEGKKPGLAVVLVGDNQA
                     SRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEH
                     ISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQIEGKRA
                     VVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDY
                     IKPGAVVIDVGMDRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKA
                     AKRIWKMN"
     gene            20667..22019
                     /locus_tag="IBJ56_000534"
     CDS             20667..22019
                     /locus_tag="IBJ56_000534"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HAM3416818.1"
                     /translation="MEQDKYLTVAAITKYIEKKFEVDPYMKQVFVRGEISNLKQPASG
                     HLYFTVKDEFAMLRSVMFHKAVQKIGFVPEDGMNVLITGRIGVFTKAGRYQFYAEHME
                     PDGVGALYIQLEQLKSQLEKEGLFAETHKKVLPSFPSKVAVVTSKTGAAVRDILTTIH
                     RRMPSVEVIVYPTIVQGEKAAQKIVENIGKINQRNDIDVMIIGRGGGSLEELWAFNEE
                     PVVRAVYDSDVPVISAVGHETDFALSDFSADVRAATPTAAAELAVPDYRDLEERLAER
                     KYRLLAVTRQALERKERSLEQLKQHLILNGPKHQLEQQMERTDYFSERLNNAFSKQIF
                     VKQTVFDRLNDRLHYYHPNKEIELQKEQMALRLQALEKAMKQLLKDKQQSFFRQIDAL
                     EHLSPLSLLKRGFGVTYKENMLVKSVQELEVGDNIQVKMQGGQIEALITAKEEDISGN
                     "
     gene            22009..22236
                     /locus_tag="IBJ56_000535"
     CDS             22009..22236
                     /locus_tag="IBJ56_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HAM3416819.1"
                     /translation="MATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTK
                     LCQDKLQSAEKRMAKVVTDAGEEIPFEADGE"
     gene            22239..>23114
                     /locus_tag="IBJ56_000536"
     CDS             22239..>23114
                     /locus_tag="IBJ56_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HAM3416820.1"
                     /translation="MQDLTLFLEQYKKVIDESLFKEISERNIEPRLKESMLYSVQAGG
                     KRIRPMLVFATLQALKVNPLLGVKTATALEMIHTYSLIHDDLPAMDNDDYRRGKYTNH
                     KVFGDATAILAGDALLTLAFSILAEDENLSFETRIALINQISFSSGAEGMVGGQLADM
                     EAENKQVTLEELSSIHARKTGELLIFAVTSAAKIAEADPEQTKRLRIFAENIGIGFQI
                     SDDILDVIGDETKMGKKTGVDAFLNKSTYPGLLTLDGAKRALNEHVAIAKSALSGHDF
                     DDEILLKLADLIALRE"
BASE COUNT         7850 a         3718 c         4651 g         6895 t
ORIGIN      
        1 aaagaaaata aaaagaaaat gcatagagtc cttgcaacaa ctgattaaaa atgatattat
       61 tatacaggtt tagtaaataa attcgtcagt cggagttgga gggaaaaata atgcgcgtta
      121 atattacttt agaatgcact gaatgcggtg atcgtaatta catcactact aaaaataagc
      181 gtgaaaatcc ggaacgtatt gaattaaaaa aatattgtcc aagattacgc cgtgtaactt
      241 tacaccgcga aactaagtaa gcagcaggat ctccattctg ttgctttttt tattaacaaa
      301 aagggggaag ccaaaatgga agacaaacga ctgatacgcg agaaaatctt acggaatttg
      361 aatagccttg atagagtaga acatcgcgaa cgttctatta gattagcgga aaaactattt
      421 ttattaccag aatgggaaaa tgcaaaggtt gttggtatca cattagcaag acaccctgaa
      481 atcgaaacag aagcaatcat cctacaagca aaaaaagaag ggaaaaccat tttaattcca
      541 aaaacatatt atcctagcaa aaaaatggag tttaaaaaga tggattcgat acatccttta
      601 ataaaatcta agtttggtat tttagaacca aatgaattag cagaaacagt tgataaaaaa
      661 gtaattgact tactaattgt tcctggagtt gcctttaata aagatcatta tagaatcggt
      721 tttggcggag gattttacga tagattttta acggattttc aaggacatac agtgtccttg
      781 tacctttatg aacaacaaat agagtttaca cctgaaaagc atgacgaacc agtttctatt
      841 ttaattggag gataaggaaa aataattcta tagaaaatag ggtggattgt ttacaacacc
      901 cttttttttg cgtatagtag taaatataat ttgtaatgaa agcagggaat tttttgagct
      961 tccaagaaca atatgtcttc tggcgcctaa ctaattattt cttgggtgtt gaaaaatacc
     1021 gtttaatcca tcttcacgag gagaaacaag aactttggtt ggaaaataca agccagaaaa
     1081 aaagaccagt catccgtata cagatgaaag aattaagttg ggctaatgtg gtggaacgcg
     1141 atgtgacaca cactttacac gttaccgaaa atcttcgtaa gcaaatgggg cgcttgaaat
     1201 tgcctcttgt gaatatttat ataacaccat ttgaaccaat gggtgatatt tcgccttttt
     1261 ttgggcagtc aattgcttct ccaaatgaaa aagtgaaatt agaaaatatt ttactcgcga
     1321 acgaacaaat gagagatcat ctagacacac tcgttaaaac tttagaatta ccagaagaag
     1381 catttgttct tccaaatgaa ataacgaaag agctagtagc aaaagaacga gagcaagtaa
     1441 tcgcgtatat tactactaaa gtaaatgaag aacaaaaagt tgctaggaat tcaaaaccaa
     1501 tagttacgta tacgttcatt ggtcttttgg ttgtagcgtt tttgtggctt tctttccaag
     1561 gtggaactac caattcattt aacttaatta aatggggcgg gaaattcaac ccacttatat
     1621 atgctgggga atggtggcgc tttatttcac cgatttttct tcatagtgga ttaatgcatt
     1681 tagcttccaa tgcagttatg ctttatattg taggtgcttg ggcagagcgt atttatggta
     1741 aatggcgata tgttctaatt cttctcttag gaggaatatg cggaaacata gccagttttg
     1801 cattaaatat gaatttatct gttggtgcaa gtactgcagt atttgcagta atgggcgcgt
     1861 tactttattt ggttgtttta aaaccaaatc tttatgcaaa aacaattggc gtcagtatcg
     1921 cgtcacttgt cgcaattaat ttgttaattg atgtattttc tagtcagatt gatattgctg
     1981 gacatattgg tggtcttgta ggtggtttct tgcttgccgg agcattatcg ttaccaaaac
     2041 aatttttcca ttggcgacga cttgcatatg gcatttcact ttttggtgta gctgttttat
     2101 ttttgtattt tggctaccaa aaaggagaac aaccatatga tccgatgcag gctaatgtag
     2161 cagtacaaca ataccttcaa gaacaaaata aaaaagaagc aaccaagatt accgataatt
     2221 taatttctag cggaagtgct gacggctatt catatacgta tgctgcatct atcgctttac
     2281 aagataagca aatagacaaa gcagaaacaa tggctaaaga agcaattaat atcgacaaag
     2341 acatcccaga agctcattat tatttatctg tttgctatag agtaaaaggc gatatgccaa
     2401 atgcaattaa agaagcgaac agtgctagag agttatccag caatccattt tttgattctt
     2461 attacgatga gttagaaaaa atcaaagaat aagaggtttt taatgtgaaa acagtttatg
     2521 atgttgccca attactaaga aagcatggca ttattgttta tttaggaaaa cgacaatatg
     2581 acatcgaaat gatggaatat gagataacag aactttttaa acataatatt ttagatagag
     2641 aaacttttgc tagagctaga agtatattga aacaagaatt aattaaagaa caacgaaaaa
     2701 atagtagttt aaattaaatt gattataagg agaacagcag aatgaacaaa aaattaattg
     2761 gtgtagattt aggcgggaca acagcaaaat tagctatttt aacaaaagaa ggcgacattg
     2821 aagaaaaatg gacaattgat acaaatattg aagataaggg cgcccacatt gttaaaaaca
     2881 ttggggattc tatcaatcaa aaattaacgg acttacaact ggataatgat attttttatg
     2941 gtattggtat gggaactcca ggtactgtaa attatgaaac aggtactgta aaaggtgcgt
     3001 acaacttagg ctgggcagat gaacaaaatg ttagtcaaga tttagaaaat attactggtt
     3061 taaaaatcat attagataat gatgctaatg ttgccgctct tggtgaacgc tggaaaggcg
     3121 caggcgaagg tggggctaat gtcgttttcg taacacttgg aacaggcgtt ggcgggggaa
     3181 ttttcgcaga aggcaaaatt ttacatggta ttcgcggagc agctggtgaa attgggcatg
     3241 taacagtagt tcctgagaat ggttatgatt gtacctgtgg caaaaaaggc tgtttagaaa
     3301 ctgtcgcatc agcaacagga atcgttcgag tagcgaaaga tttagcgaaa gagtatactg
     3361 gtaaatccgc acttaaagat gcaataaata acgatgaaac aattacttct aaattgattt
     3421 ttgaactagg agcagaagat gatgctttag caaatgaaac aattgataaa atttctttct
     3481 atttggcttt agcgctcagt catattggaa acatgttaaa tccagagaag attattattg
     3541 gtggtggcgt ttcagcagca ggcgatcaat tattaacacc ggttaaaact tattttgaga
     3601 caatggtttt cccagctgtt aaagaatcca ctaaattatc tattgcgaca aaagggaatg
     3661 acgcagggat aattggagct gcatggttag cgctaccaag tgaagattaa tattaatatt
     3721 aatttgtata agctacaata acactccatt attgtagctt gttttataaa gctaatcttt
     3781 ctataacgca ttgttttagc ttcctttgaa aagggtaaaa ttttagcata gagagattgg
     3841 aggccagaga tgaaaaaatc aaatgttttt ttgctgatta ccttattagt cggattggtt
     3901 tttatctctt ttggttgctc ggaggaaaaa gaaacgccaa aaaagactgc aaaagaagta
     3961 caaggtgttc aaatcaaaac caaagaattc cagcgagtag ttggttggtt gtcaaaagat
     4021 tctgttttgc tgcaaaccaa aaaatctgga gttacgtatt ttgaagaatt gaatatttac
     4081 aatgaaaaga aaagaccaat ctttaatacg aaggaatcta tttctgaagt gcaaattagt
     4141 ccagattatc gaaacatctt actttattct gctgaatcag ctgaaaaagc cacgatgcga
     4201 ataatcgctt tgaatgatgg ttcaactgtt gcttcacgtt caacaaaacc tctgacgacg
     4261 acattttatt ggaatgatga gtcacctgaa aaaatcatgt ttgtctcata tagtccagaa
     4321 tggaattttc aaatagaaaa ttgggactat acgttgagtc aactggataa aatagatgtc
     4381 acgtcacctt ttatttcctg gtacggagat aatttggtga tttcgaacaa taaagacaaa
     4441 ccggatgatg aattaggaaa cctttattta caagacatta gagataacgc tactaaaaat
     4501 ttaattgtag ctaatattat gcaatttgct gttcacgata atgtactgct tactattgaa
     4561 aaaaactctg atgaaaaatt attatacgat tttagaacac tgggatttca aaatttcttt
     4621 tcgtataatg ctgcacgaga atacgatgaa ttagggactt ttgttccgta ttttgataca
     4681 aattttgata agaatacttt tctaacattt gttccatata aaagcgctaa aattggcagc
     4741 ggagcaaaag agtataagtt agtaaaaatt gatccaacga acaaaaaaga atcgactatc
     4801 ttggaattaa tggataacca acctatttta tcttatgaaa aaggggattt agttctctat
     4861 ggttatttat ttgataaggt aatcgatacg aaaacaggta aaatgtataa tttaattaat
     4921 acaccaacta aatcttttta aaacaacgag ttccttcttt aagggctcgt tgtttttgct
     4981 aatgtatagc cgttttctag tgtgatttga cagttgaatt ctgttagttg attatccgtc
     5041 gcctggcaat ctatctttgc gcctttgaaa tttattttaa attgatgtga aagtgaggtt
     5101 gtttccttaa tttctatgaa agctaaattt agtttagtgg aggctaaata ataattttga
     5161 atcatttttt catattgtat ttgtgtctta aagatagaag cagtaccagt aacgattaaa
     5221 attgaaataa gcgcaatgaa aatggtaaat gggagcgtaa atgcattagt cttcatggat
     5281 tggataccac ttctggtaat gcgaatacag atgtatatat ctgagtatta gagtcttgca
     5341 ccgttaaatg aagttgtttt tctttcttga ttaattgata atctttcaca ttagtaagca
     5401 atggttcatg tccttttcca tttacttgtc gacgaactaa atcattatat ttggaatagg
     5461 tgataagatc tttgccatta ctaaaagaaa gcttattcct atcaatctga atattagtcg
     5521 ctttttctaa ttctagacga gtttgaatga gaaaaagttg ccattctgtt gtctgatcaa
     5581 tgttactaat ctggatagtc ttgttatagc attgaaaaaa taatggaatg agcgagctaa
     5641 tacttaaaat gatcgtaata gacaagattg tttcaagaag agtgaaagca ggtgagccat
     5701 ttctaaaaga tacatttttc ttccgattta ttttttgcac aaatttggat acctccttga
     5761 taatggaaac tttcgatacg ttcatcctta aagttaactg gaacgctttt gtgccgtaat
     5821 agttcgctat gttcgtaaat ttcttgatag actctgctag tttctttttg atagtctagt
     5881 ttttcaaaaa tagtcattgc tgtgggtaat agaaaactac aaaccattga aaaaaggaga
     5941 agtgaaacca tgctttcaac taaagagaat ccgttaattt tattcaattc taaaacgccc
     6001 ctttccgatt tgaaatatta gcttgtagtt atttgtcgaa cttgtcaggt gaattgttga
     6061 aaaacgatta atggatccat ctgtactcga gaaacgaaaa tttcctattt ttggttgtgt
     6121 taaagttaac gtctgtgaga atggaaggat agcaagtgtt tttgagttag tatatgtgat
     6181 gagttggttt ctcattggat caaatgaaat aaacgtatct tgctttgttg ctacagcatt
     6241 tatttgcgca tagtaaatgg tggcttttat ttcttctagt agttgtttct ccctaagcgt
     6301 ggataatgta cttgaaatag gaaagatggt taatgtgatt agtgtaaagc tgatagttag
     6361 tacaagtaac atttctaata aagtaaatcc atttattttc attttttctc agaaacattt
     6421 cctgagctat ctatcttgat gctatttcca ttaggacaag atttttggtt agcttttaga
     6481 taacctccac ttactaaatc agctacagaa gggattgaat ttttatctaa ttggtaggac
     6541 tgaacttgac cttgaaccat tgaaataaag gcctcgcatc ctttatcgtt gattgactta
     6601 ctttgtgata ctatgttggg aatagtaagg agtaacaaaa cactaaccac taacaataca
     6661 attaacatct ccaccaaagt aaagcctcgc tcatctcgcc aatcaatttt ctttttaaac
     6721 attaaaactc ctccttttaa atttgattta ccatagaaaa catgggatat aaaatggata
     6781 aataaatgga tacaattaaa ataccaataa caataaaaac aattggttgg ataaatgaaa
     6841 ataatttttc ggtcttttga agtgatttct gatgacataa gttataataa aataaaaatt
     6901 cttctgctaa attaccattt ttttcaccgt ggatagcaat gtaataaagt tctctttcaa
     6961 atataggcat tttttctagt gcttttgtta gtgataatcc ttgttcaagc gtaggaagga
     7021 tttgcctggc gattgcttga aagaatgcgg gcgattcttc ttgcgcgaag aggtgcataa
     7081 tatgcgttat agataaaccg cttttcagca gatatccaag ttcgcgcgaa aggtattgcg
     7141 aataatgaat tcttgaaaat tggcgaatat atggaattcg acaataaaaa taagctcggt
     7201 cgtaagcatt tttttgcttt tgttttcgaa taaggaaact gaagattaga aaaaggctaa
     7261 gtaaaaaaat tcctaataaa actggaattt tttcaagcag gaaataagtg aatttagttc
     7321 cgactgtgcc gttagttgat aattgtgtaa ataaaagttc gaatttaggt aagagaaaaa
     7381 ttcgaagcaa gaagaacacc agaataacag tagagaataa gactagtgga tattggaagg
     7441 tcttcattaa tgcgtttttt tcctccgctt ttcttttcat atggacgccg gtttcgtgaa
     7501 ttgtttgcaa aaagtaaccg tgactagaag cataatgaag ttgtgaacaa atgaattcag
     7561 gaaatccgtt ttttgaaaga gcataggaaa aagaatttcc gtttgcaagt gaagtgataa
     7621 tttgttcata tcttttgcga tatttgggcg aagtaatgct taaatagcta atggtcgcat
     7681 ctaatgagaa tcccttttcg agtaaactgg caactctaat taaaaattct ccgtcctctt
     7741 tccaattagt gcgctgaaaa aaaaccatag gcaactcctt tctcgaatgt tcttttaata
     7801 gggtatttag gcttaatctg ctgtttatta gattggaaat aggcttttat ctcttgttgc
     7861 gtaagaactt catagatagc tgttcttttt cggtgcaaat gtgtacaaaa gggatggcat
     7921 ttttctccgc agaaggtgca aactaggtgt gtcagcttct gaaaactgat tcctagtaag
     7981 cattgcgcta attcttctga gctaataccg aattcaagta atcttaataa aactccgtaa
     8041 gcatctccgg catgaaccgt gcttaaaact aagtgaccgg ttaatgcagc acgaacaact
     8101 attttagcgg tttctgcatc gcgtatttcc ccgataatta aaatatcagg atcatggcgt
     8161 aagacggagc gaatgatggg tgcataggta atgcttgcct tttcgttcac ttcgatttgg
     8221 agaaagccgg gagaatgatg ttcaacagga tcttcaattg taatgatttg catttcatct
     8281 ttattttcta tagaagaaac aaggctatac atagaactgg acttaccact acctgtgcta
     8341 ccggaaaaaa gaaacaagcc tgtttggttt ttacactgtt gttgaatttg attagtggat
     8401 ctaggaaaaa cactagattt taaaaatggg atagggtact tgtaacgaaa aattcgaatg
     8461 accatgcttt catgaaaatc tttgctaggc atagtagaaa gccgtatagc aattttttct
     8521 gtgtttgtat ttttttcaaa gctaccagat tgaggtcgtc ttttttcgct tatatccaaa
     8581 gctgcttgga atttaagaaa agatattaac ttttccccta catctattgg aaggtaaaga
     8641 agcggaatca atgtcccgtt tacccgaaga cggagtaagt aacggtttga gagtggatga
     8701 atatgaacat cacttgcatg gacacgtaat gcttgagtta tgatgtgttc tgtcattttt
     8761 tgcggcataa gaacctcctt acaagtcata ttcctcaaaa gtaaacaaaa tcctttgtgt
     8821 cccaatcttt cacaaaaacg aaaatagtat tttctaaatg caaaagtagc atttcaagct
     8881 aaaataatat tgaaagtggt attttagaag caaataagtg aataaaaaat ttttttcgat
     8941 tttgatgatt ttcacaatct atgtgcaatg aataacaagc gtataattaa acggtaatat
     9001 cgcaataaag cccttacatt ccgaaccaat atcaaaaata aagaaaattt aagctttaaa
     9061 actaattatt tgccgaacaa tacaactcat gataagctat agaaaaggca aatacataat
     9121 agaattagcg ggtgaatgta agcagagaga ctgcgaaaag cggcgccgac ggggaaagca
     9181 tgtattatgt gaaactctca ggcaaaagga tgtttacggg acgcaactct ggagtcattt
     9241 ttgtgttacg acagggctta tgaaccatat aagccttttt gttatgtgaa aaaggaggat
     9301 ataattatga cagagttact aaaaacaccg attcatccac tttatgcaaa atatggtgcg
     9361 aaaaccattg attttggtgg atgggattta ccggtacaat ttgctggtat aaaagcagaa
     9421 catgaggccg tgcgaactga tgcagggcta tttgatgtgt ctcacatggg agaaattcta
     9481 gtaaaaggac cggatagtac ttcttattta cagtatttgt taaccaatga cattgaaaaa
     9541 ataaaaatcg gaaaagcaca atataatatt atgtgctatg aaactggtgg aacagtggac
     9601 gatttagtag tttacaagaa atcagaaacg gaatacatac ttgttgtcaa tgcagcaaat
     9661 acggataagg attttgaatg gatggttaaa aatattcgcg gggatgtttc tgttaccaat
     9721 gtatcttcgg aatatggaca attagcactt caagggccaa acgcagaaaa aattctcgca
     9781 aaactaacgg atgtagattt aagttcgatt agcttctttg gatttgtgga ggatgcggat
     9841 gtagcaggag tgaaaacaat catttcaaga agtggctata ctggagaaga tggatttgaa
     9901 atttatatgc caagcgctga tgcaggaaaa gtttttgagg caattttagc tgaaggagta
     9961 gctccaattg gtttaggtgc acgggataca ttgcgcttag aggcggtact tgcgctttat
    10021 gggcaagaat tgagcaagga cattacacca cttgaagcag ggcttaattt tgctgttaaa
    10081 ttaaaaaaag aagcagattt tataggtaaa gaagcgctta ttaaacaaaa agaagcaggg
    10141 ctgaatagaa aactagttgg tattgaatta attgaacgag gtattccgcg tcacgattat
    10201 ccagtatttc taaatgagga agaaattggc attgtgactt ctggtaccca atcacccaca
    10261 cttggaacaa atattggtct tgctctaatt gatacagctt acacagaaat aggtcaagaa
    10321 gtagaagtag gtataagaaa caaaaaagta aaagcgaaaa tagtaccaac accattttat
    10381 aaacgcgcaa agtaaaaagg aggaagtaat atggcaaaac atcgttattt accaatgaca
    10441 gagcaagatg aaaaggaaat gcttgatgta ataggggtta agtcaattga tgacttattt
    10501 caagatattc cagaaaaaat tagatttaaa cgagattatg atttaaaacc agcaaaatct
    10561 gaacctgcac ttttacgcga attatcgaaa cttgcttcta aaaatgctaa tactactgaa
    10621 tatgcgtctt ttttaggggc tggagtttat agtcattaca ttccaactgt agtcgatcac
    10681 gttatttctc gctcagaatt ttatacagca tatacgcctt atcaacctga aatttcgcaa
    10741 ggagagttgc aggcaatctt tgaattccaa acgatgattg cggaacttac tggaatggac
    10801 ttggctaatt cctctatgta tgatggtgga acagcgcttg cagaagcagc gatgctagca
    10861 agtggacata caaagcgcaa aaaaattctc atttccggag ctgttcaccc ggaaagtagc
    10921 aatgttttaa aaacctatgc aactggccaa cacattgaag tagaagttat tccagaacta
    10981 gatggaaaaa cagacattga ggcgctaaaa aaagctcttt cagatgatat tgcgggtttt
    11041 gttgtacaat atccaaactt ctatggacaa gtggaacctt tggctgaact tgaaaaatta
    11101 gtgcatgaaa ataattcttt attacttgta tcgagcaatc cgttgtctct aggtttgtta
    11161 acaccaccag gagaatttgg tgcagatatt gttgtgggtg attcgcaagt atttggtatc
    11221 ccagaatcat ttggtggacc gcattgtgga ttctttgcag taacaaataa attaatgcgt
    11281 aaagttcctg gacgtttagt tggggaaacc gtagacgaga acgggaagcg tgggtatgta
    11341 ctaacattac aagcacgcga acaacatatt cgccgtgata aagcgacgtc taatatttgt
    11401 tccaatcaag cattgaatgc attagcttct tctgtcgcaa tggcaaccct tggaaaaaca
    11461 ggtcttgtag aaatggcaaa acaaaactta gataaatctc attatgccaa acaaaaattc
    11521 cgtgaaaaag gctttgaagt tctattttca gatggctttt tcaatgaatt tgttgtaaaa
    11581 ctttcgaaac caatcaaaga agtgaatgaa tcacttttag atgaagggat tattggtggg
    11641 tatgaccttg gtttttatga ggaaaaatat gaaaaccata tgcttgtagc tgttactgaa
    11701 atgcggacaa aagaggaaat tgatgccttt gtggcgagct tggagggtgc aaaatgaatt
    11761 tagaagaaac gatgccatta gtgtttgaac gttctattcc aggaagaatt ggctttagtt
    11821 taccagaaag cgatgttcca gaaacaaaag ccagtgatta ttttgaacaa gcgtatattc
    11881 gttctgtacc agcagatttg cctgaattaa gcgagcttga aatcatgcgt cattatacca
    11941 atttatccaa tcataacttt ggtgttgatt ctggttttta tccgcttggc tcttgtacga
    12001 tgaaatataa cccaaaaatc aatgaaaaag ttgcacgctt tcctggtttc gctaatatcc
    12061 atccaaacca accagaaagc tctgtccaag gcgcgctaga actactgtat gatttgcaaa
    12121 caagcttagt tgaaattaca ggaatggatg aagtaacgct acaaccagct gctggagcac
    12181 acggagaatg gacgggatta atgctcattc gtgcattcca tgaaaagaat ggggatacaa
    12241 aacgaacaaa agtaatcatc ccagactctg cacatggaac aaaccctgca tctgcagcag
    12301 tagcgggctt cgatgttgtc acggtgaaat cgaatgaaaa aggacttgtc gatgtagctg
    12361 atttgaaaaa agtagtaggc gaagacacgg ccgcactaat gctcacaaac ccaaatacac
    12421 ttggtctttt tgaaaaagat attgttgaaa tggcggaaat tgttcatgaa gctggcggga
    12481 aattgtacta tgatggtgcc aatttaaatg ctattatggc gaaagttaga ccaggagaca
    12541 tgggctttga tgttgttcat ttgaatttac acaaaacatt tactggtcct cacggtggtg
    12601 gcggtcctgg ttctggccca attggcgtga aaaaggaatt aataccattc ttaccaacac
    12661 cagtccttac gaaaaaagaa gaaggatact cgtttgatta taactatcct gactctattg
    12721 gacgagtgaa accttattat ggcaacttcg gcatcaatgt tcgcgcgtat acgtatattc
    12781 gcacaatggg tccggatggc ttgaaattgg tgacagaata tgccgtttta aatgccaact
    12841 atatgatgcg taaactgcaa gaagcctatg atttaccatt tgatcaagtt tgtaaacacg
    12901 aatttgtttt aagtggtaat agacagaaga aacttggcgt aagaactgtt gatattgcga
    12961 aacgattgct agatcacaat ttccatccgc caacagttta ttttccgcta attgttggtg
    13021 aagcaatcat gattgaaccg actgaaacag aatcgaaaga aactctagat tctttcattg
    13081 atacgatgtt aaaaattgcg aaagaagcgg aagaaaatcc tgaaatcgtc caagaagcgc
    13141 cacatagcac ctatgtgaaa cgactagacg aaacacgcgc tgctagaaaa ccgattttac
    13201 gttatcaaaa agaagtataa aaaaaacctt gctgtgaatt tccacagcaa ggttttttct
    13261 tatttagatt tagtttttcc tgtccattta cggtagccgc ctttaagctg ataaacttgt
    13321 ttgtatccgc gtttataaag cataattgct gcacggttac tacgttgtgc tgtttggcag
    13381 tataagtaaa ctggtaaatc ttgacgaatt tctgttgtcc ggtttttcat ttgtgtaact
    13441 gggatatttc tagctccaag aatatgtcca gcatcgaatt catttggctc gcgaacatca
    13501 attaactgtg ctttacgata acctttttta aattcttctt ctgttaaaac ttttactgct
    13561 ttgcgacgca ttacaaactg gtaaatttcg tatcctagaa gaataaccag aatgataatt
    13621 gctataatcc aactaatcaa ttgtgtaaac ccctttcatc ctgaaaactg ctttttttaa
    13681 agcatccttt tctattataa cttatttttt gccaccatca atcactttga aagaagattt
    13741 tcgttttttc ttcgtttttt tcttcggatc atgtaaattt ttcgattgtt ttactgcttt
    13801 ttggtaatta ctgtcagttt ttctatttgt gaaaaaccgc agtagaaggg tgaaaataag
    13861 tgccccgatt aatacggaaa taattaaggt gaaaaatgat ttaaaaccac ccattaaaag
    13921 cccaatacca acaagcgcaa gtaaaataat aactatgagg ggatacttct tcaaattaat
    13981 ccactcctat tctaaaagtt ccagattatc tggctcagtt acatctactg gtgcaccttc
    14041 tttttccact cgtaaaagct cattaaagga tgcaatggca acctcaactt gatcatcaga
    14101 cggttctttt gttgtaagaa gttgtagcca taaacccggg acacctaaat atttaagaac
    14161 tgggatatta cggcatttat tagttaattg aagtacttca aaagctacac caagcacaac
    14221 aggaataagt aaaatccggt cgaccacacg aagccaaaga ggatcggttg gtactaacaa
    14281 ataaataaac ataccaacaa taactgtaaa taaaataaaa ctactaccac aacgataatg
    14341 aagtcgcgat tgtttctgta cattttcaac cgttaaaggt aatttttctt cgtaacaatt
    14401 tattacctta tgctcagaac cgtgatattg aaaaactcgt ttaataatag gggtctgaga
    14461 aaccgcgaaa atataggtta atagaagaat taatttgaaa agactctcta aaaatacttg
    14521 cgccgtatca cctggtacga taggacggaa taattccgct aaaaatacag ggatgagcgt
    14581 catgacaaat tttgcaaaga cgaaagataa aataccgatg acggcaacac caagccacat
    14641 cgcgactttc gattctttct tttcaatttt ttcttcttct actgggttat ttggatcttc
    14701 gtcatatcgg tctgttgcaa aagcgaggtg tttggaaccg atagcgctag attcaattaa
    14761 tgcaacaatt cctcttaaaa aagggatttt cttcatacgc ataacccaaa ccggactatt
    14821 tttttctaaa taaaaatatt ctaatgaacc atctatacgt ctaattgctg ttacggtctg
    14881 ttttctgccg ccaaacatga cgccttcaac tacagcttga ccgccatatg atggtacgtt
    14941 ttgtttgctc aaagttttca ccagcctatt catgtttact aatatgttat tttacgctaa
    15001 aaatagtttt tcgtatagcg caaaacgcct aaaaaaagtt attttttcta aattgtgata
    15061 aaatagtttc gaacgcgtct aataatgcga tttttgcgcg cctaaaattt gataaaagtg
    15121 ggggaataaa aatgtctaaa ttaactaaaa ttcaagaaac gctgggcaag gaaaagatag
    15181 aagcagttct tgtcacaagt gagtttaata gaaggtatgt atcaggtttc actggaacaa
    15241 gtggtgtggc gctaatttta cctgaaaaag cttattttgt aactgatttc agatatacgg
    15301 aacaagcagc aaaacaagca gaaggatacg aaattgtaca acatactggt ccgatttttg
    15361 atacagtaga agatttatta attaaaaatg atacaaaaac actacatttt gaagcggatt
    15421 atgtgaccgt atctgaattt aaacaaatgg agcgcgtatt taatcgtcaa ttaatcccac
    15481 ttactggctt ctttgaagaa atgcgtaaag tgaaaacagc aagtgaacta aaagcaatcc
    15541 gcacagcttg tgatattgct gatgcagctt ttgcacatat cattcaattt atcaaaccag
    15601 gcatggctga aatcgaagta tctaatgaac tagaattctt tatgagacgt gcgggagcta
    15661 cttcctcgtc gtttgataca attgtcgcat ctggtgttcg ttctgcgtta ccgcatggtg
    15721 ttgcttcgga taaaaaaatc gaagttggcg atttcgttac aatggattac ggctgttact
    15781 atgacggtta ttgttcagat atgacaagaa ctatcgcggt cggtgaacct gctgaaaaat
    15841 taaaagaaat ttaccaaatt acgttagatg cgcaattaaa agtaatcgat agcttaaaac
    15901 caggtatgac tggaattgaa gcagatgcta ttgcacgtga ttatattgct tcttttggct
    15961 atggcgatgc atttggacat tctttaggac atggtattgg actagaaatt cacgaaggac
    16021 ctaatttatc ctttaagagc cctcaaaaac tagaagtcgg acatgttgtg acggatgaac
    16081 caggaattta tttaccagga atcggtggcg ttagaattga agatgatctc ttaattacag
    16141 aaacaggtaa tgagatttta attcattcac caaaagaatt aattatttta taaaattcct
    16201 ttgtaacttt gtgtgtttta tggttaaata aggaagaatg agcagtttta atatgctcca
    16261 aataaagata ctttgcaaat tacaggagga aaaacatgat ttcagtaaat gactttaaaa
    16321 cagggttaac aatagaagta gataatggta tttggcgtgt gctagatttt caacatgtaa
    16381 aacccggaaa aggagcagca ttcgttcgtt ccaaattacg taaccttcgt acaggtgcaa
    16441 tccaagaaaa aacattccgt ggtggcgaaa aagtagcaaa agcgcaaatc gacaaccgta
    16501 aaatggccta cttgtatgct gacggcacaa atcacgtatt catggacaat gagtcttatg
    16561 aacaaattga gcttccagaa gaccaaattg ctcatgaact taaattccta aaagaaaata
    16621 tggaaattaa tattatcatg tatcaaggcg aaacaatcgg tattgattta cctaacacag
    16681 tagaattagt tgttactgca actgatcctg gaattaaagg tgatacttct tcaggcggtt
    16741 ctaaaccagc cacgcttgaa actggtcttg ttgtccaagt gccatttttc gttaatgaag
    16801 gagacaaact agtaattaat acaaccgaag cagcgtatgt ttctcgggcg taagcaagaa
    16861 tcgtttacta cagctggagt taattcttca gctgtttttc tatttcttag cgcttccagt
    16921 acaccttttg aataaaaagt atggtacaat aaggacaatg cgtgattcat gcaatttttt
    16981 atttttagta ttattaagga gtgtaaatgg tatgttatca atagatgaaa ttaaacagct
    17041 aatcgagctg attgacgagt caaccctaga tgaatttgag ttagaaacga aagatagtaa
    17101 gattttgctt aaaaagaata aaacagttgt tgctgcagca gttcaagaag caccaattgc
    17161 tatcacacaa gcaccagctc aggcagcacc agtagcacaa gctcaaacag ctgctcctca
    17221 aacagaagca aatacagcgg aagatgctag tttagaagtc attacatcgc caatggttgg
    17281 gactttttac gcatctgctt caccagaaga tgctaatttt gttagcgttg gatctaaagt
    17341 atctgcgcaa tctgttgtat gtattgtaga agcaatgaaa ttattcaatg aaattactgc
    17401 tgatattgac ggagaaatcg cagaaattct tgtttcaagt ggcgaattag tcgaatttgg
    17461 acaaccacta ttcaaagtta gaaaaaaata aggggtcgaa aaacatgatt aaaaaagtac
    17521 tggtagcgaa ccgtggagaa atcgctgtcc gtatcattcg cgctgcaaaa gaacttggag
    17581 tggagacagt ggcgatttat tcggaagcag ataaagaagc gctacatatt cagctggcgg
    17641 atgaagctta ttgtgtaggt cccgcagcaa caaaagatag ttatttaaat atgtccaaca
    17701 ttattagtct tgcagtttta acgaactgtg atgctattca cccaggctat ggtttcttag
    17761 ccgaaaatgc agatttcgcg gagttatgcg aagactgtaa tattactttt atcggaccaa
    17821 gtgcttccgc tatttcgcaa atgggaacaa aagatgtagc ccgcgaaacg atgcgtaaag
    17881 caggtgttcc aatcgttcct ggttcgcagg gaatcgttaa ggatgtagaa gatggcaaaa
    17941 aaatcgctaa gaaaatcggt tatccggtta tcattaaagc aacagctggc ggtggcggta
    18001 aaggtatccg tgtagcagaa aatgaagaaa aattaatttc tggcattcaa actacccaac
    18061 aagaagccga agccgcattt ggtgatcctg gcgtttactt agaaaagtat attcaagatt
    18121 tccgccatgt agaaattcaa gtgcttgctg ataaccatgg taacgttatt catttaggag
    18181 aacgtgattg tagtattcaa cgtcgcttac aaaagctaat tgaagaatca ccatcacctg
    18241 ccattgatga aaaaactcgc caaaaaatgg gaaaagctgc tgttaaagct gccaaagccg
    18301 tgaattattc tggcgcagga acgattgaat tcattttcga tcaccatgaa aataattttt
    18361 actttatgga aatgaatacg cgtatccaag tagaacaccc ggtaaccgag cttgttactg
    18421 gtgttgattt agtgaaacaa caatttctag ttgcttctgg ggaagaacta caaattaaac
    18481 aagcagatgt gaaattaaca ggttgggcga tggaatgtcg aattaacgct gaaaatccag
    18541 agaaaaactt tatgccagct ccaggtgaaa ttaaatttta tcttcctcca ggtggcttag
    18601 gtgttcgaat tgactcagca gcatatccaa actacaaaat cccgccatac tatgattcga
    18661 tgattgccaa agtaatctgt tatgcggaaa cacgggaaga agtgattcaa aaaatgaaac
    18721 gtgcgttgtc cgaatttgcc attgatggca ttccttcaac gattccgttc catttacgtg
    18781 tattagataa tgatgtgttt ttatcaggcg acttcaatac caaattcttg gagcaaaacg
    18841 atgtaatgaa tctttctaag gagggctaaa taatggctta tacaaaagat ttgcgtaaac
    18901 aaaatgatgc accgcttggc aaaattgaga ttgcacctga agtaattggc gtaattgctg
    18961 gtcttgctgc aagtgaaatc gaaaatgttg cttatatgca aggtggcttt gcgacagaaa
    19021 tgcgtgagaa attcagtggt gctgtaaact accgtaaggg cgtaaaagta gaactaaccg
    19081 aagaaggaat tctaatcgaa ctttattgtt cagtcttatt tggcgcaact attccacttg
    19141 ttgctcaaaa tattcaagat gctgtcagag ataccatttt taatatgact ggtttaaatg
    19201 tacttgaaat caacgttcat atcgttggtg tacaatttga aaaaacagaa acactttcct
    19261 tcgatgattt tgagctataa aattcaagga acaaaaggag cagctttaac atgaaaagaa
    19321 gagaagcgcg cgagaaagca cttcaagcac tattccaaat agagctaaac gaaatgtcgc
    19381 tagatcaagc tattaaaaac atcatggaag acgagcaaga cgactatatg gaaaaattag
    19441 tcgaaggcgt aatggcgaat aaagctgaaa ttgatgctat cattgagcct aatttagata
    19501 attggcgcat ggatcgtttg agtaaagtcg atctatcctt acttcgacta agtgtctatg
    19561 aaattaagta cttggatgat gtgccaaata gagttagttt gaatgaatcc atcgaaattg
    19621 caaaaattta cagtgatgaa aaatcaagta aatttattaa tggcgtactt gctaatattg
    19681 caccggaaga taaataagct tgattgagtg caagggaaat ctcttgcact cccttatttc
    19741 gtgatttttt aagaataatt acgtgcaact tatttttaaa gggggcaata ctcatgggag
    19801 aaattattga tggcaaaaag ttagcaaaag aaattcaaga aaaagtaaca agagaagtag
    19861 ctgaattagt aaaagaaggt aagaaaccag ggcttgctgt tgtgctcgtt ggcgacaatc
    19921 aagcatctcg tacatatgta agaaataaac aaaaacggac agaagaagcg gggatgaaat
    19981 ccgttttaat tgaacttcca gaaaatgtaa cagaagaaaa attactatct gttgtagagg
    20041 agcttaacga agataaaact attcatggca tactcgtgca gttaccacta ccagaacaca
    20101 tttcagaaga aaaagtaatt gatactatta gctatgacaa agatgttgac ggtttccatc
    20161 cagtgaatgt aggtaattta ttcatcggaa aagattcttt tgttccttgt acaccagcag
    20221 gaattattga acttataaaa tcgaccggca ctcaaataga aggcaaacgc gctgttgtta
    20281 ttggtagaag taacatcgta gggaaaccag tagctcaatt actgttaaat gaaaacgcga
    20341 cagtaaccat tgcgcatagc cgtacaaaag atttaccaca agtagcgaaa gaagcggata
    20401 ttcttgttgt agcaacaggt ttagctaaat ttgtgaaaaa agactatatc aaaccaggtg
    20461 cggttgttat tgatgttggc atggatcgcg acgaaaataa taagttatgc ggtgatgtgg
    20521 actttgatga tgtggtagaa gaagcaggat ttatcacgcc ggtaccaggt ggcgttggcc
    20581 cgatgacaat cacaatgcta cttgcgaaca cattaaaagc agcaaaacgc atttggaaaa
    20641 tgaattgatt aattggatgt gaaatgatgg agcaagataa atatttgacg gtagcagcaa
    20701 taaccaaata tatcgaaaaa aagtttgaag tagatcccta catgaagcaa gtttttgtgc
    20761 gcggtgaaat ttctaattta aaacaaccag cgagtggaca tctatatttt acggtaaaag
    20821 atgaatttgc gatgcttcgt tctgtcatgt ttcacaaagc agttcaaaaa attggttttg
    20881 tcccagaaga tggtatgaat gtccttatca caggacgaat tggcgtattt acaaaagctg
    20941 gtcgctatca gttctatgca gaacatatgg aaccagatgg tgtcggagcg ctttatattc
    21001 aattagagca attaaaatcg caattggaaa aggaagggct ttttgcggaa acgcataaaa
    21061 aagtgcttcc ttctttcccg tctaaagtcg ctgtcgttac gtccaaaact ggtgcggctg
    21121 ttcgtgatat actaaccacc attcatcgaa gaatgccttc tgtggaagtg attgtttatc
    21181 caactattgt tcaaggggag aaagcggctc aaaaaattgt cgaaaacatt ggcaagatta
    21241 atcagcgaaa tgatattgat gttatgatta ttgggcgtgg tggtggttcg cttgaagaac
    21301 tatgggcttt taatgaagaa cctgttgttc gagcagtata tgattccgat gtacctgtaa
    21361 tttcagcggt cggacatgaa actgattttg cgttaagtga tttttctgca gatgtacgag
    21421 ccgcaacgcc aactgcggcg gcagaacttg ctgttccaga ttatcgcgat ttagaagaac
    21481 gattagcaga acgtaaatac cgtttgctcg cagtcaccag acaagcatta gaaagaaaag
    21541 aacggtcact agagcaactt aaacaacact tgattttaaa tggtccgaaa catcaattag
    21601 aacagcaaat ggaacgtaca gattattttt ccgaacgatt aaataatgct ttttctaaac
    21661 aaatatttgt taagcaaaca gtttttgacc gattaaatga tcgcctacat tattaccatc
    21721 cgaataaaga aattgaacta caaaaagaac agatggcact acgacttcaa gcattagaaa
    21781 aagcgatgaa acaacttttg aaagacaaac aacaatcttt ctttcggcaa atagatgcgc
    21841 tagaacatct gagtcctctt tctttattga aacgaggatt tggtgtaacg tataaagaga
    21901 atatgctggt taaatcagtg caggagcttg aagtcggcga taatatccaa gtgaaaatgc
    21961 aaggcggaca gatagaggca ctcattaccg cgaaggagga agatataagt ggcaactaaa
    22021 aagaaaactt ttgaagaagc aattgcagaa ttagaaacaa tcgtagaagc actcgaaaat
    22081 ggtagtgcct cacttgaaga ttctcttgat atgtaccaaa aaggaatcga actaacaaaa
    22141 ttgtgccaag ataaattaca atcagcagaa aaacgaatgg caaaagtagt cacagatgca
    22201 ggagaagaaa ttccttttga agcggatggt gaataaattt gcaagattta accctttttc
    22261 tagaacaata taaaaaagtg attgatgagt cgctttttaa agaaataagc gagcgaaata
    22321 tcgaacctag actaaaagag tccatgttat attctgttca agcaggtgga aaacggattc
    22381 gtcccatgct agtttttgct acacttcaag ccttaaaagt aaatccgctt ttaggtgtga
    22441 aaacagcaac ggcattagaa atgattcata cgtatagcct gatccatgat gatttaccag
    22501 caatggataa tgatgactat cgtcgcggca aatatactaa tcataaagtt tttggggatg
    22561 caactgcgat tttggcagga gacgctttac taacgcttgc tttttctatt ttagcggaag
    22621 acgaaaattt atcttttgaa acacgcatag ctttgattaa tcaaattagt tttagtagtg
    22681 gtgcagaagg aatggttggc ggtcaacttg cagatatgga ggcagaaaac aaacaagtga
    22741 cattagaaga actatcatcc atccatgcac ggaaaacagg cgaattatta atttttgccg
    22801 taacttctgc tgcgaaaatt gcagaagctg acccagaaca aacgaaaaga ttacggattt
    22861 ttgcggaaaa tattgggatt ggattccaaa tcagtgacga tattttagat gttattggtg
    22921 atgaaacaaa aatgggtaaa aagacagggg tcgacgcttt tctgaacaaa agtacctatc
    22981 ccggattact cacgcttgat ggtgccaaaa gggcattaaa tgagcatgtt gcgattgcaa
    23041 agtcagcgct ttcagggcat gattttgatg atgaaattct cttgaaactt gctgatttaa
    23101 tcgcacttag agaa
//
LOCUS       DABQVC010000020        22778 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.020,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000020 DABQVC010000000
VERSION     DABQVC010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 22778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22778
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.020"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            65..445
                     /locus_tag="IBJ56_000537"
     CDS             65..445
                     /locus_tag="IBJ56_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416821.1"
                     /translation="MRKIPIFTVLVAILLFGGYYLYQHASSKVDVTFNFVVDQKSKNN
                     TITGKIDGAGNKSITLPLSEESWDAVKKGNRYNVEATFYNKNKISSSEAKELDGPFWS
                     NDSNRGLLVNKVHVENIQELSDDF"
     gene            complement(485..2260)
                     /gene="aspS"
                     /locus_tag="IBJ56_000538"
     CDS             complement(485..2260)
                     /gene="aspS"
                     /locus_tag="IBJ56_000538"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HAM3416822.1"
                     /translation="MEKRTSYCGELNEAHIGQSVVLHGWVQKRRDLGGLIFIDLRDRE
                     GIVQVVFNPEFSKEALEIADSVRNEFVVTIKGTVHARGEKAINEKLATGKVEVLAEEI
                     TILNTSKTPPFYIEDGVNVSDELRLKYRYLDLRRPEMNNIFKMRHTVTRTFRNKLDAL
                     GFFDIETPYLTKSTPEGARDYLVPSRVYPGNFYALPQSPQILKQLLMTAGFDKYYQIV
                     RCFRDEDLRGDRQPEFTQIDLETSFLTKEEIQAITEDMLVDVVKEAKNITIDKPFPRM
                     TYKEAMDRFGSDKPDIRFGLELQNVSDVVKDVDFKVFQSAIENGGEVKAINAKAAAAN
                     FSRKDLDALGVFVANYGAKGLAWLKVEAGELKGPIAKFFPEEKATELKASLQAEDGDL
                     LLFAADKADIVAASLGALRNKLGKELNLINEEELAFLWVTDWPLFEYDEEAGRYVSAH
                     HPFTLPKEEDIPLLETDSSKVMAEAYDIVLNGYEIGGGSLRIYKKEVQESMFRALGFT
                     DESAKEQFGFLMDALEYGTPPHGGIALGLDRIVMILAGRNNLRDTIAFPKTGSAVDPL
                     TNAPGEVSEAQLAELKLETVKKETN"
     gene            complement(2262..3539)
                     /locus_tag="IBJ56_000539"
     CDS             complement(2262..3539)
                     /locus_tag="IBJ56_000539"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HAM3416823.1"
                     /translation="MDLQLPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVF
                     EHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQP
                     IKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLINI
                     KLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLI
                     QSAPSILDFLNEESVAYFENVKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEG
                     FGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIKIPAKKPLEVYV
                     ITAQPEAELKAVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQ
                     TGNYQLKNMETGEQEAVSETTILEKLINTKGEN"
     gene            3990..5273
                     /locus_tag="IBJ56_000540"
     CDS             3990..5273
                     /locus_tag="IBJ56_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HAM3416824.1"
                     /translation="MKNKFIFITVVSILLIAAGIFTTIAMANANSVVVKAEVLNVRSG
                     PGLAYDVTSQARKNEVLRVVGEENQWYKVQLDNGNSGWVASWLVENTDVSAASNSVAI
                     VSSDGGLNVREKPSTSSKALGLLNNGDQVTVTSQQNGWAQIQYNGTSAWVSSDYLTIR
                     ESVTKVDESELQTVTIRDDSTNIRNKPSRDGAVIEKANSGQGFAIQGVQGDWYKIRTT
                     SGEEGYVANWVVDVSDKGQTSSPRSKTTKLSEATIVIDPGHGGNDPGAKGSNGTIEKE
                     MTLKTAKQLKQKLEARGAKVILTRNSDKYVSLKGRTNIAAENNADVFISIHFDSLEDA
                     SKGVSGQTTYYYDNSDKSLAESINTTLGKDLPTTNRGARVGDYYVVRENSQPAVLLEL
                     GYLSSAKDESNINSASYRSQIAESVTDGLSNYFSN"
     gene            complement(5311..5763)
                     /locus_tag="IBJ56_000541"
     CDS             complement(5311..5763)
                     /locus_tag="IBJ56_000541"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HAM3416825.1"
                     /translation="MRVLLQRCYEASVSVEEEVISEIAGGLCLLVGFTHKDTPETVDY
                     MAKKIVGLRIFEDESEKMNISLAERGGAILSVSQFTLYADVSRGKRPSFTKSAPAEKA
                     ETLYDLFNQKLTEAGFIVETGVFGAMMDVKIVNHGPVTIMLDSDEMRK"
     gene            complement(5779..7995)
                     /locus_tag="IBJ56_000542"
     CDS             complement(5779..7995)
                     /locus_tag="IBJ56_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HAM3416826.1"
                     /translation="MAKEQNLTAEQVIDMASHYMNQEHLALVKKAYEFARDSHKEQFR
                     KSGEPYIIHPIQVAGILVELKMDPSTVASGFLHDVVEDTPVTLADLEEVFGSEVAMLV
                     DGVTKLGKIKYKSHEEQQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQ
                     RRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRIVHLMKQKRDARERYL
                     HDVIDGVNENLDELNIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVSSIK
                     DCYAVLGIIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQ
                     IAEYGVAAHWAYKEGKVVNSKTSFDNKLTWFREILEYQNESDNAEEFMESLKLDLFSD
                     VVYVFTPKGDVYELPNGSVPLDFAYRVHTEIGNKTIGAKINGKIVTLDYKLKTGDIID
                     ILTSKHSYGPSRDWLKLVQTSQARNKIKQFFKRQAKEENVEKGRDLVEKEIRQLGFES
                     KKIMTPENLRKLADKLNFSHEDDLFAAVGYNGITALQVANRLTEKLRKERELEAETEK
                     LLTQSENKPSNSDANNEKLKIKHNAGVVVQGVGNLLIRLSRCCNPVPGDAIVGYITKG
                     RGISIHRQDCPNVQAIEPERLIEVDWEDADSQAKNDYNVDIEIYGYNRNGLLNDILQV
                     INSLTSNINGVNAKVDNNKMATLVVTLQIHNINHLQRVVDKIKQIPDVYTVRRLMN"
     gene            complement(8201..8722)
                     /locus_tag="IBJ56_000543"
     CDS             complement(8201..8722)
                     /locus_tag="IBJ56_000543"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HAM3416827.1"
                     /translation="MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIV
                     EYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTN
                     KLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHK
                     KLNGYDRLILMQL"
     gene            complement(8712..11063)
                     /gene="recJ"
                     /locus_tag="IBJ56_000544"
     CDS             complement(8712..11063)
                     /gene="recJ"
                     /locus_tag="IBJ56_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HAM3416828.1"
                     /translation="MIHSKYLWNIEGAAEDKASQLAEQLKISLPLAKLLWKRKITTQG
                     QFDKFFHPEKYESYDPFLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMK
                     TLRHLGANAEFYIPNRFTEGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEI
                     GLDVIVTDHHEPREVMPEAVAVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPKEL
                     LDLVAVGTVADLVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIG
                     FGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAME
                     AIEAKETLGNVLVVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSV
                     DAFHLYQALDKHRDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEASFLSEEDFRPAL
                     KIEEKINIADVSVAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTML
                     ATEENDATLDSIGFGVGDLVEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHW
                     QLFDVRNKSEWARILQEQTESRVFVCFEERTIGTLGEKNYILVDEKADFTADFQTEEL
                     VFADMPTKTELVETIVRETKPERIFVHFDAAEGNQIPAIPDRLAFAELYSLIKKFQPF
                     PIEKYTPRLMQKFGWNKEQIDFMSKVFFDLEFAKMESGQIIINEVVEKRNLDESLVYQ
                     QKVEEITTRKKLLYSNYTELHSWMESMMETSIYPNAEELENGN"
     gene            complement(11168..11512)
                     /locus_tag="IBJ56_000545"
     CDS             complement(11168..11512)
                     /locus_tag="IBJ56_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HAM3416829.1"
                     /translation="MKENKVQWQVIAGIILALIIAIFAVINVDPVEVNFLFAQAEWPL
                     ILIILGSVLCGCLIIFFLNIAKSRGMKKQVKQLTSEKAELERQLAAAKAMKTHSSKVE
                     TRDTENVVDTTK"
     gene            complement(11610..13874)
                     /locus_tag="IBJ56_000546"
     CDS             complement(11610..13874)
                     /locus_tag="IBJ56_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecDF"
                     /protein_id="HAM3416830.1"
                     /translation="MVKKSKIVIFFLVVAIIFGAVFGTAKMVMQNINLGLDLQGGFEV
                     LYEVSPADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQE
                     EARKMLSTTAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASV
                     TKTILAEAPDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFT
                     TEEAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAV
                     YRLPGVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKE
                     EIKVGRSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILV
                     SFLTAVWGSRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFV
                     KHHRLFLSIFAAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAI
                     DMPSDDIVFQGSGSKTAVVSYKGTLSQNDVAKFKNYFEDKYKHEPSISTVSPTVGKEL
                     AKNGFWALGVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFI
                     AAVLTVIGYSINDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILT
                     VIFTVLALVLFGSESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKKGPIST
                     VKKKKPRNNGQPVV"
     gene            complement(13975..14265)
                     /locus_tag="IBJ56_000547"
     CDS             complement(13975..14265)
                     /locus_tag="IBJ56_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416831.1"
                     /translation="MDTFSEWYEDLAPAISIKVEDFHILGYREIKASHIWAFLTEEKW
                     KNEPTPALHERINDVMQMNIGQLMQFIMTTAEQESNNHVSQADSMLQPNVED"
     gene            complement(14408..14737)
                     /gene="yajC"
                     /locus_tag="IBJ56_000548"
     CDS             complement(14408..14737)
                     /gene="yajC"
                     /locus_tag="IBJ56_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HAM3416832.1"
                     /translation="MGGIVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDK
                     IITIGGLHGIVEAIEDGTVILKCGNSKLTFDRNAIRTVLEKGNAVSNPVVAETTSDDT
                     EVVEDNK"
     gene            complement(14771..15910)
                     /gene="tgt"
                     /locus_tag="IBJ56_000549"
     CDS             complement(14771..15910)
                     /gene="tgt"
                     /locus_tag="IBJ56_000549"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HAM3416833.1"
                     /translation="MSAIRYELIKTDKQTGARLGKIHTPHGTFDTPMFMPVGTLATVK
                     TMSPEELKAMGAGIILSNTYHLWLRPGEELIREAGGLHKFMNWDQPILTDSGGFQVFS
                     LSKMRDIKEEGVHFRNHLNGDKLFLSPEKAIQIQNALGSDIMMSFDECPPYPASHEYM
                     KKSVERTSRWAERGLKAHVRPEDQGLFGIVQGGAYEDLRAQSAKDLVSLDFPGYSIGG
                     LSVGEPKDVMNRVLEHTTPLLPANKPRYLMGVGSPDSLIDGVIRGVDMFDCVLPTRIA
                     RNGTCMTSSGRLVIKNAKFTHDFRPIDENCDCYTCKNYSRAYIRHLIRCEETFGIRLT
                     TYHNLHFLLNLMKQVRGAIMEDRLADFREEFFEQYGFNRPDAKNF"
     gene            complement(15997..17025)
                     /gene="queA"
                     /locus_tag="IBJ56_000550"
     CDS             complement(15997..17025)
                     /gene="queA"
                     /locus_tag="IBJ56_000550"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HAM3416834.1"
                     /translation="MKVEDFDFDLPEELIAQTPLLDRTSSRLMVLDKKSGDIKDQHFT
                     DIISYLNEGDALVLNDTRVLPARLHGIKDETGAHIEVLLLKQKEGNAWETLVKPAKRI
                     RKGATITFGDGALKAICLEELEHGGRILEFSYEGIFYEVLEQLGEMPLPPYIKEQLAD
                     QDRYQTVYAKENGSAAAPTAGLHFTEDLLAKISAKGVEIIFVTLHVGLGTFRPVDVED
                     TTNHKMHSEFYRLTEESAERINKIKAQGGKVVAVGTTSIRTLETIASRHDGKLVAESG
                     WTEIFISPGYTFQAVDALITNFHLPKSTLIMLVSALSDRTKILAAYNHAVEEQYRFFS
                     FGDAMFIH"
     gene            complement(17029..18036)
                     /gene="ruvB"
                     /locus_tag="IBJ56_000551"
     CDS             complement(17029..18036)
                     /gene="ruvB"
                     /locus_tag="IBJ56_000551"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HAM3416835.1"
                     /translation="MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFI
                     EAATLRNEALDHVLLYGPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTS
                     LEPGDVLFIDEIHRLSRAIEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGAT
                     TRAGLLSAPLRDRFGVIDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGT
                     PRIANRLLKRVRDFAQVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFR
                     GGPVGLDTIAASIGEERETIEDMQEPYLLQIGFLQRTPRGRIATETAYNHLGISYEKE
                     V"
     gene            complement(18052..18657)
                     /gene="ruvA"
                     /locus_tag="IBJ56_000552"
     CDS             complement(18052..18657)
                     /gene="ruvA"
                     /locus_tag="IBJ56_000552"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HAM3416836.1"
                     /translation="MYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRLEGTEA
                     QVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIE
                     SEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAV
                     LALEALGYSTRELKKVIPKLSKEEDLTSDAYIKLALQLMTK"
     gene            complement(18781..19716)
                     /locus_tag="IBJ56_000553"
     CDS             complement(18781..19716)
                     /locus_tag="IBJ56_000553"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HAM3416837.1"
                     /translation="MKPRKVMIIGAGNVGTAAAHAFVNQKFVEELILVDLNKERVEGN
                     RKDLADAAAFMPGKMDITVRDASDCADVDIAVITVTAGPLKEGQTRLDELRSTSRIVS
                     SIVPEMMKGGFNGIFLIATNPCDIITYQVWKLSGLPRERVLGTGVWLDTTRLRRLLAE
                     KLDIAAQSIDAFILGEHGDSQFPVWSHSSIYGKPVNEYSVEKLGEALDLKQIGETARD
                     TGFEIYHQKGCTEYGIGGTIVEICRHIFSGSQRALTVSCVLDGEYGESGLAIGVPAVL
                     SQNGVKEIISLKLDEKEKEAFANSVAVIKKSIQSI"
     gene            complement(19786..20511)
                     /locus_tag="IBJ56_000554"
     CDS             complement(19786..20511)
                     /locus_tag="IBJ56_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAM3416838.1"
                     /translation="MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNL
                     NPSLRLVMDKAKAVNMPNDNIKRAIDKAAGNTSGENYDEVTYEGYAPGGIAVLVHALT
                     DNKNRTSTNVRVAFNKNGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEA
                     GADDVEVSEDVFEIFTDPATFPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQF
                     DKMLEALEDDDDVQEVYTNAEIN"
     gene            complement(20622..21470)
                     /gene="pheA"
                     /locus_tag="IBJ56_000555"
     CDS             complement(20622..21470)
                     /gene="pheA"
                     /locus_tag="IBJ56_000555"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011702338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HAM3416839.1"
                     /translation="MKIAYLGPAASFTHAAAAKAFPKEEMIAKSTIPDCIMAIEKEDV
                     DVAVVPIENTIEGSVNITLDYLFHFSSVPVVAEIVLPIAQHLMVHPAHVSAWKSVQKV
                     MSHPQALAQCHTFLQAELYGVEREVTPSTAYAAKWVSNNPTELVAAIAPRMAANEYGL
                     EIVKENAQDLELNQTRFFVLSRKPVSILLPKEEEKTSISVILPNNMPGALHKVLSTFA
                     WRDIDLSKIESRPLKTSLGEYFFLIDVLSEGKETLVTNALDEITLLGGTANKLGTYHV
                     HRLQTT"
     gene            complement(21537..>22778)
                     /gene="obgE"
                     /locus_tag="IBJ56_000556"
     CDS             complement(21537..>22778)
                     /gene="obgE"
                     /locus_tag="IBJ56_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HAM3416840.1"
                     /translation="DGMVAFRREKFVPNGGPAGGDGGKGADVVFVVDEGLRTLVDFRF
                     KRIFKAEHGEHGMSKSMHGRGAEDLVVKVPQGTIVKDIDTGEIIADLVAHGQRAVIAK
                     AGRGGRGNKRFATPANPAPELSENGEPGQERNVQLELKVLADVGLVGFPSVGKSTLLS
                     VVSAARPKIAAYHFTTIVPNLGMVDAGDGRSFVMADLPGLIEGASQGVGLGHQFLRHI
                     ERTRVIVHVIDMSGSEGRVPYEDYMAINNELEQYNLRLMERPQIIVANKMDMPDAEEN
                     LNEFKTKIAEDIPVFPISAVTKTGLRELLLAIADKLETTPEFPLNEILEQEDEDTVLY
                     KYVAEEPDFEISREPDGTFVLSGAKIERLFTMTNFERDASISRFARQLRAMGVDEALR
                     KRGAKDGDIVRLLDYEFEFMD"
BASE COUNT         6570 a         4905 c         3876 g         7427 t
ORIGIN      
        1 gcttttacac ttataatgaa aaaggaagaa cgtttagaac agataaggag gcgcgaaatt
       61 ccctatgcgt aaaatcccca ttttcaccgt tctagtagct atcctgcttt ttggcggtta
      121 ttatctttat caacacgctt cgtcaaaagt agacgttacc tttaatttcg tggtggacca
      181 aaaatcaaaa aacaatacca tcactggcaa aattgatggc gctggaaaca aatcaattac
      241 actaccactt tctgaagaga gttgggatgc agtaaaaaaa gggaatcgct acaatgtgga
      301 agccactttt tataataaaa ataaaatcag ctccagtgaa gcgaaagaat tggacggccc
      361 attctggtcc aatgattcca atcgagggtt attagttaat aaagtacacg ttgaaaacat
      421 tcaagaatta agtgatgatt tttaaaacga aaagaaggtg agcatttgcg ctcaccttct
      481 ttttttagtt tgtttctttt ttcactgtct cgagtttcaa ctctgctagc tgtgcttcac
      541 tcacttcacc tggtgcattt gttagcggat ccactgcact acctgtttta gggaatgcta
      601 ttgtgtcacg caagttattt cggccagcta agatcataac gatacgatct aatccaagcg
      661 cgataccacc atgaggcggt gtaccatatt ctaacgcatc cattaggaag ccaaattgtt
      721 ctttcgctga ttcatccgta aagccaagtg cacggaacat cgattcttgc acttcttttt
      781 tataaatccg taatgaacct ccgccgattt catatccatt taatacgata tcataagctt
      841 ctgccattac tttagaagag tccgtttcaa gaagtggaat atcttcttct tttggtaaag
      901 tgaatggatg atgcgcagat acatagcgcc ctgcttcttc atcatattca aataacggcc
      961 aatcagtcac ccataagaaa gcaagttctt cttcattgat taagtttaac tctttaccaa
     1021 gtttattacg aagcgccccc agtgatgctg caacgatatc tgctttatca gctgcaaata
     1081 gtaataaatc gccatcttct gcttgtagag atgcttttag ttctgttgct ttttcttcag
     1141 ggaagaattt agcaatcggg cctttcagtt caccagcctc tacttttaac caagcaagac
     1201 cttttgcccc gtagttagca acaaaaacac ctagtgcatc taaatctttg cgtgaaaaat
     1261 tagctgcggc tgcttttgca ttgattgctt tcacttctcc accattttcg attgcggatt
     1321 ggaaaacttt aaaatcaaca tcttttacga catcggatac attttgtaat tctaaaccaa
     1381 aacgaatatc cggtttatca ctgccaaaac gatccattgc ttctttatat gtcatacgag
     1441 gaaacggttt gtcgatagta atatttttcg cttctttcac tacatctact aacatatctt
     1501 ccgtaatcgc ttggatttct tctttcgtta aaaagctagt ctctaaatcg atttgtgtaa
     1561 attcaggttg acggtcaccg cgcaaatcct catcgcggaa gcaacgtacg atttggtaat
     1621 atttatcaaa cccagcagtc attagtaact gttttaaaat ttgcggagat tgtggcaatg
     1681 catagaagtt accagggtaa acacgacttg gtacaagata atcgcgtgca ccttctggcg
     1741 tacttttcgt taaataaggt gtttcaatat caaagaatcc gagtgcatcc agcttattgc
     1801 ggaacgttct cgttaccgtg tgacgcattt tgaaaatgtt gttcatttcc gggcgtcgta
     1861 agtctaaata acggtatttc aaacgcaatt catccgaaac attcacgcca tcttcaatat
     1921 aaaatggtgg tgttttagac gtatttaaaa tggtaatttc ttctgctaaa acttctactt
     1981 taccagttgc taatttttca ttgatagctt tttcaccacg agcatggact gtccctttaa
     2041 tagtaacaac aaattcattt cgaacactat cagcgatttc aagcgcttct ttcgaaaatt
     2101 caggattgaa aacaacttgg acaattcctt cgcgatcacg taaatcaata aaaattaaac
     2161 cacctaagtc gcgtcttttt tgcacccacc catgaaggac aacactttga ccaatatgcg
     2221 cttcgtttaa ttcaccgcag taacttgtac gtttttccat tttaattctc ccccttggtg
     2281 tttattaatt tttctagtat agttgtttca gacacagctt cttgctcgcc tgtttccata
     2341 tttttcaatt gataattgcc tgtttgtaat tcttcttcac caagaataat ggtatatacg
     2401 gcattttttc tattggcgtc ttttagttgt gctttgaatt tacgttttaa gtaatctttt
     2461 tctgcactaa tgccgttttg tcttaattta tttacgagtg ttacggcttt tagttctgct
     2521 tccggttgcg ctgtaatcac ataaacctct aacggttttt tcgcaggtat tttgatgtcc
     2581 gctttttcta gcgccagtaa aatacgttcc acaccaatac caaagcccat tcctggtgta
     2641 tctgggccac caaactctct cactaaaccg tgatatcttc cgccaccaca aagcgttgtt
     2701 ttcgcaccaa atccttcttc tacgctcata atttcaaatg tcgtatggtt ataataatct
     2761 aaaccacgaa ccatcgttga atcaatttca aacggaatct ctagcgcatt taagtatttt
     2821 tttacatttt caaaataggc aacagattct tcatttaaaa agtccagaat agatggtgcc
     2881 gattgaatta gtggattgtc atgatctttt ttacagtcta aaatacgcag tggatttttg
     2941 tgtaaccgca cttggcattc cgcacaaaat tcatcaatat gtggttcaaa atgcgcaacc
     3001 agggcttccc ggtgttttag acgactttct ttatcaccaa gactattaat gaccaattta
     3061 atatttatta gaccaatttt tcggaaaaac tccattgcta gtgaaattac ttctacatca
     3121 atagaaggat catcacttcc aagcgcctca atgcccattt gagtaaactg gcgttgtctt
     3181 ccgccttgtg gacgttcata acgaaacatt ggctcattat aatacatttt gattggttgg
     3241 cttacttcgc cgtataattt atgctcaaca aaagcacgaa caacagaagc ggtcccctct
     3301 ggtctcagcg ttaaacttct gccaccctta tcttggaaag tgtacatttc ttttgatacg
     3361 atatcggtgg aatcaccaac cccgcgttca aataattctg tatgttcaaa aacaggtgtt
     3421 ctaatttctt catattgata gttctcacac acttttttaa actctgtctc taaaaaatgc
     3481 catttactaa cctcttctgg caaaatatct cgtgtccctc tcggtaattg caaatccatc
     3541 accataagcc tcctttttca cttcaaaata taaagaaaaa cccccgtcac ttgttataaa
     3601 aaacaaggga cgagagtttg tttacacccg tggtaccacc ctaattagaa ctactaatga
     3661 gtcctcactt aagtcagtta acgcctgaat acgttcttgc ttactgtttt caacaagaaa
     3721 cctcgagagt gtcttttcag aaaatgtgac tatctttatc ctttcagcca aatgggataa
     3781 attctctgta tagcatggat ttccttactt ttctctgtcg ctagttttaa atatgaatta
     3841 ttctaagatt actaaaaaca cactgaaaag tcaacatttt gccagttttt ttataaaaaa
     3901 ccactttcta gttccatgaa agcgcatttt atggtaacat tttactgtca gataaaagtt
     3961 tatgagtata tgggtggtgt tagctttaaa tgaagaataa attcattttt atcaccgttg
     4021 tctccatttt attgattgca gcaggtattt ttacaaccat agcaatggcg aacgcgaatt
     4081 ccgtagtcgt caaagcagaa gtcttgaatg tccgcagcgg tcctggttta gcatatgatg
     4141 taacgagcca agccagaaaa aatgaagtac tccgggtagt cggtgaagaa aatcaatggt
     4201 acaaagttca gttagataac ggaaatagcg gttgggttgc aagctggtta gtagaaaaca
     4261 ctgatgtcag cgcagcaagt aacagtgtcg ctatcgtttc ttctgacggc ggtttgaatg
     4321 tacgtgaaaa accaagtacc tcaagtaaag cacttggatt gctaaataat ggtgatcaag
     4381 taacagttac tagccaacaa aacggctggg cgcaaatcca atataacggt acaagcgcat
     4441 gggttagctc cgattactta acgattcgtg aatctgttac aaaagtagat gaaagtgagc
     4501 tacaaacagt aaccattcgc gatgactcca ctaatattag aaataagcca agtcgtgatg
     4561 gcgccgtcat cgaaaaagca aattctggtc aagggttcgc tattcaagga gtacaaggtg
     4621 actggtataa gatacgtacg acaagcggcg aagaaggtta tgtagctaac tgggtagtcg
     4681 atgtttctga caaaggtcaa acatccagcc ctcgaagcaa aacaaccaaa ttatccgaag
     4741 caaccatcgt tattgacccc ggacacggtg gcaacgatcc gggcgctaaa gggtcaaatg
     4801 gcacaattga aaaagaaatg actttgaaga cagcaaaaca attaaaacaa aaattagaag
     4861 ctagaggcgc taaagtaatc ctaacgagaa acagtgataa atatgtctct ctaaaaggaa
     4921 gaacaaatat agctgccgaa aataatgcag atgtgtttat tagtattcac tttgatagct
     4981 tagaagacgc gagcaaaggg gtaagcgggc aaacaactta ttattatgat aatagtgata
     5041 aatcgcttgc tgaaagtatt aatactacgc tcgggaaaga cctccctact actaatcgtg
     5101 gtgcaagagt cggcgattat tatgtagtca gagaaaattc tcaacccgca gtccttctag
     5161 aacttggtta tctaagttct gcaaaagatg aaagtaatat caactcagca tcatacagaa
     5221 gccaaatcgc tgaatcagta acagatggcc tatctaatta cttctctaat taaaaaaaac
     5281 aatcattcag gagactgaat gattgttttt ttatttacgc atttcatctg aatcgagcat
     5341 tattgttact ggaccgtgat tgacaatttt cacatccatc attgcgccaa atactccagt
     5401 ttcaacaata aaacccgctt ctgtaagttt ttgattaaat aagtcataca gtgtttctgc
     5461 tttttctgct ggggcggatt ttgtaaagct tggacgtttt cctctactta catcagcgta
     5521 taaagtgaac tgggaaacgc taagaatcgc gccgcctcgt tctgctaaag aaatattcat
     5581 cttctcggat tcatcttcaa aaattcgtaa tccaacgatt ttttttgcca tatagtccac
     5641 ggtttctggg gtatctttat gggtgaatcc aactaataaa caaagacctc cagctatttc
     5701 gctaatgact tcctcctcca cactcacgga agcttcataa caccgttgca gtagtacacg
     5761 catcgcttct ccactccttt agttcattaa tcttctcact gtataaacat ctggaatttg
     5821 ttttatttta tccactacac gttgtaaatg attaatatta tgaatctgta gcgtgaccac
     5881 taatgttgcc atcttgttgt tatcaacctt agcattgacg ccgttaatat tggaagttag
     5941 actgttaatc acttgtagaa tatcatttag caaaccgtta cgattatagc cataaatttc
     6001 gatgtctaca ttatagtcat ttttcgcttg tgaatcagca tcttcccagt ccacttcgat
     6061 cagccgctct ggttcaatag cttgaacatt tgggcaatct tgacgatgta tagaaatgcc
     6121 tcgacctttt gtaatataac caacgatagc atcaccaggc actggattac aacatctgga
     6181 tagtcgaatc aatagattac ctactccttg aacaactact cctgcattat gcttaatctt
     6241 cagtttctca ttgttagcat ctgaattcga aggtttattt tctgattgcg tcaataactt
     6301 ctctgtttct gcttctaatt cacgttcttt tcgaagtttt tctgttaagc ggttagctac
     6361 ttgtaaagct gtaatgccat tataaccaac agctgcaaac aaatcatctt catgcgaaaa
     6421 atttagttta tcagctaatt tacgaagatt ttctggcgtc ataatttttt tcgattcgaa
     6481 tccaagttgt ctaatttctt tctcaactaa atcgcgacct ttttcgacat tctcttcttt
     6541 tgcttgtcgt ttgaaaaatt gtttaatttt atttcgcgct tgcgaagttt gaactaattt
     6601 aagccagtcg cgacttgggc cgtaagaatg tttggacgtt aaaatatcaa taatatcgcc
     6661 cgtttttaat ttatagtcga gtgtcacaat ttttccgtta attttagccc cgattgtttt
     6721 gtttccgatt tcggtatgga cacggtaagc aaaatcgagt ggtacagagc catttggtaa
     6781 ctcgtacaca tcgccttttg gagtaaatac gtaaacaaca tccgaaaata agtcgagttt
     6841 caagctttcc ataaactctt ccgcattatc cgattcattt tgatattcta aaatttctcg
     6901 gaaccatgtt aatttattat cgaatgaagt tttggaatta accactttgc cttctttata
     6961 ggcccagtgt gccgcaaccc cgtattcagc gatttggtgc atttcgtgcg ttctaatttg
     7021 aacttcaagc ggttctcctt gaggccctat aaccgtcgtg tgaatcgatt gatacatatt
     7081 cgacttcggc atcgcaatat aatctttaaa gcgacctggc atcggtttcc agcgcgtatg
     7141 aataatacca agaacagcat agcaatcctt gatactacta actacaattc gaacagccaa
     7201 caaatcataa atttcgttaa attgtttatt ttgttcgctc attttccggt aaatcgaata
     7261 aatatgtttt ggtcttccag aaatatccgc ttgaatattg agttcatcta gattttcatt
     7321 cacaccgtca atcacatcat gcaaataacg ctctcttgca tcccgctttt gtttcattaa
     7381 gtgaacgatg cgataatatt gttgtggatt taaataacgc agcgctgtat cttccagctc
     7441 ccatttcact cgcgaaatac ccaagcgatg tgcaagtggc gcaaaaattt ctaatgtttc
     7501 gttcgcaatt ctacgttgtt tttccacggg caaatgtttt aatgtccgca tattatgcaa
     7561 acggtccgcc agtttgatta aaataacgcg aatatcctgc gccatcgcaa tgaacatttt
     7621 ccgatgattt tcagcttgtt gttcttcgtg tgatttatat ttaattttac caagtttcgt
     7681 tactccgtct actagcatgg caacttcact gccaaaaact tcttctaaat ccgctagtgt
     7741 gactggcgta tcttccacga catcatgtaa aaatccagat gcaacggtcg atggatccat
     7801 ttttaattcg actaaaatgc cggcaacttg aattggatga ataatatacg gctcacctga
     7861 tttacgaaat tgctctttat gagaatcgcg cgcaaattca tacgcttttt ttacgagcgc
     7921 tagatgttcc tgattcatat aatgagaagc catatcgatg acctgctcag ctgtcagatt
     7981 ttgttctttc gccatttaca ttcaccctct tatctccatg tcatatatac aacttaaaaa
     8041 cacccaaaaa ctgagtgttc taaaaaatat tcttgtttaa tattatagca tgagccgtct
     8101 ttgtttagaa agcacttttc cttgattttt cacattttct ggcagttttc agctttttaa
     8161 tcaaaaaact acccctaaaa taataggagt agtttgattt ttataattgc ataaggatta
     8221 aacggtcgta accatttaat tttttatgtc cttctagctc ttttagttcg attaagaaag
     8281 cacaaccagc aacaataccg cctaattctt ctacaagttt gatagttgct tcgattgttc
     8341 caccagttgc aagtaaatca tctgtaatta aaacgcgttg ccccggttta atcgcatcac
     8401 tatgcataga taatttattc gtaccatatt ctaaatcgta ttccatttcg attgtttcac
     8461 gaggaagttt tcctggttta cgaacaggcg caaaaccaat tcctaacgca taagcaactg
     8521 ggcagccgat aataaagcca cgtgcttctg gtccaacaat aatatcaatt tttaattctt
     8581 ttgcgtattc cacaatttta tctgtagcaa aacgatatgc ttctccgtca ttcataaggg
     8641 gtgtgatgtc tttaaataca atcccttttt tgggccaatc gttcacaatc gctacataat
     8701 cttgtaaatc tttaatttcc attttctagt tcctccgcat tcgggtaaat tgatgtttcc
     8761 atcattgatt ccatccaact atgaagttcc gtatagttag agtacaacag tttttttctt
     8821 gtagttattt cttctacctt ttgttgataa acaagtgatt cgtccagatt acgtttttca
     8881 acaacttcat taataataat ctgaccactt tccattttag caaattctaa atcaaaaaac
     8941 acctttgaca tgaaatctat ttgctcttta ttccagccaa acttttgcat tagccgtggt
     9001 gtgtactttt caattggaaa tggttggaat tttttgatga gactatatag ctcagcaaag
     9061 gctaaccggt ctggaattgc tggaatttga ttcccctctg ctgcatcaaa atggacaaaa
     9121 atacgctctg gtttcgtttc acgaacaatc gtttccacta attcagtctt cgttggcata
     9181 tccgcaaaaa caagttcttc tgtctggaaa tccgccgtaa aatcagcttt ttcatccact
     9241 aaaatatagt ttttttctcc aagcgtgcca atcgttcttt cttcaaaaca aacaaaaact
     9301 cttgattctg tttgttcttg gagaatccta gcccactcag atttattacg tacatcgaaa
     9361 agttgccaat gcgagatgtg aatgtccatc atgcgtagtt gtggtttttt cacattattc
     9421 cattcattga tggataattc cccaaccacg tccacggctg catttggaga aattttttct
     9481 accaaatcgc ctacaccaaa tccgatagaa tctaaagtgg catcattttc ctctgtagca
     9541 agcattgttt ttaaatgggt tttatctgcc ccaattcttt tcgttccttt taaatgcata
     9601 ttttctaaca agaaaattgg tttagggtta tccattccaa aaggagctaa tttttcaagt
     9661 tgagcaataa atgctacgga aacatccgca atatttattt tctcttctat tttcaaggct
     9721 gggcggaaat cttcttcaga aagaaaactc gcttcttctt gtaatttagc ttctaattct
     9781 gttagatttt cagcgggcaa tgtaagaccc gcagccattg gatgcccacc aaatgcagtc
     9841 attaaatcac gatgtttatc aagcgcttga tacaaatgaa atgcatcgac gcttcgacca
     9901 gatcctttgg caattccagt aactggatca attcctagta caatcgccgg acgagaatat
     9961 gttccaacta atttagaagc aactatccct aaaatccctg tattccaacc ctctccgtaa
    10021 acaacgagca catttcctaa tgtttctttt gcctcaattg cctccatcgc gagcttcgtt
    10081 gtatcaacaa ctatttgttt acgttcttta ttcgcatcat caatttcttc tgctaagaaa
    10141 agtgcttctt ctggatcctc tgttaaaagt aaatccgccg ctggatctgc tgggcctaaa
    10201 cgaccaacag cattcagtcg tggagctaaa ccaaagccaa tagtttcttc cgtagcctct
    10261 tctaacttca aactagcttt tttagctaac actgaaagtc caaggttcgc ggattcgcgc
    10321 aattggcgca atccaagttg gacaagtaag cgattttcat ctgttaaaga aactaaatct
    10381 gccaccgttc caactgcaac taaatcaagc aattctttcg gttcttctcc aagtaatgca
    10441 tgcgataact tataagcaac acccacaccc gctaattcat caaaaggata agctgactta
    10501 ggatgcttcg gatgaattac tgcaacagct tccggcataa cttcccgtgg ttcatggtga
    10561 tccgtcacaa taacatctaa accaatctct ttggcatgcg tcattacttc aagcgccgca
    10621 ataccattat caaccgtaat aattaaatcc gttccttggt ttttagccat atcaaaagca
    10681 gtgatatttg gaccataacc ttccgtaaaa cgattaggaa tataaaattc agcatttgct
    10741 cctaaatgcc gcagtgtttt cattaaaacg gcaatactag taactccatc tgcatcataa
    10801 tctccgtaaa ctaaaatctg ctcatttagt tctatcgctc gcttaattct agcaaccgca
    10861 agatccattt cagcaaataa aaatgggtca tagctttcat atttttctgg gtggaaaaat
    10921 ttatcgaatt gtccttgcgt tgtaattttt cttttccaaa gtagttttgc aagtggaagc
    10981 gaaattttta gctgttctgc taattggctt gctttgtctt ccgccgctcc ctcgatattc
    11041 cataagtatt ttgaatgaat cacattaccc cacctctcaa ccttcctatt atatcgaaaa
    11101 tcactagaaa aaccaagagg aatcttctaa caaaaaacgc caacatattt tgtcagcgtc
    11161 ccatttttta tttagttgtg tctaccacat tttctgtatc acgtgtttct actttagatg
    11221 aatgagtttt cattgcttta gcagctgcta gttggcgttc taattctgct ttttcggatg
    11281 ttaattgttt tacttgtttc ttcattccac gcgatttcgc gatatttaag aaaaagataa
    11341 ttaaacaacc acaaagaaca gagcctaaaa taattaaaat taatggccac tccgcttgcg
    11401 caaataaaaa gtttacttct actggatcta cattaataac tgcaaaaata gcaataatga
    11461 gtgctaaaat aatccccgca attacttgcc actgtacttt attttctttc atgttttttc
    11521 tcctccttgc acaattatct tattatttac ccgtttctag gctattaaaa acgaccgaat
    11581 ctctttttat gaaattcggc cgttcgtttt tatacgacag gttgcccgtt attacgtggt
    11641 tttttctttt taactgtgct aattgggcct ttttttcgta gttgtcgtgc tttgaatacg
    11701 taccacaatt gcattgccat aaagatggag gagaatacac tcgaaacaag tccaacaagt
    11761 aaggcgatgg agaagttcag aatagactca ctaccaaata gtacaagtgc cagtacggtg
    11821 aaaataaccg ttaaaatggt attaattgaa cgagtgaatg tttggcgtaa tgctttatta
    11881 accgcattcg caatttcttc tttcgttttg aaacgttgca tcttcatact aatatcccgt
    11941 atccggtcgg cggtgactat cgtgtcatta atggaataac cgataaccgt cagcaccgcg
    12001 gcaatgaagg ttaagtcaac ctccagcctt gttacactga agaatatgaa gatgataaat
    12061 gcgtcgaata gtaaggacag aatcgccgca atacccatat aaaattcaaa ccggactgca
    12121 atataaagta caatcagcac agacgccaca ccgagtgccc agaagccatt tttggcaagt
    12181 tctttaccga cagttggtga aacggtacta atgcttggtt cgtgcttata cttgtcctca
    12241 aaatagtttt taaatttagc tacatcattt tgtgataatg tccctttata agaaacaacg
    12301 gctgttttag accctgatcc ttggaaaaca atatcatccg atggcatatc aatcgcatct
    12361 aaatctttct taatttgcgt ttctgtcagc gtttgattag ctgttacttc cgctcgtgtc
    12421 ccactggcaa agtcaatacc tagatttagc ctaaatatgg agagaataac aataccgaca
    12481 ataacaattg cagcaaaaat agataagaac agacgatgat gttttacaaa atcaaagcga
    12541 tcaaagtgtg tttttaagct aaagctatta attccctcat gtaaattatg aatatctttt
    12601 cgtttaactg caaagaatcc tggtttattg ttaagccaat tacttttcac taataagcct
    12661 aataagaatc ttgatcccca aacggctgtc aagaagctga ctaaaatact aatgattaga
    12721 accgtagcaa aacctttgat ggagcttgtt ccaaagtaga agagaaccgc agctacgata
    12781 agtgtcgtca agttaccatc taaaatcgca cggaatgctt ctttaccgcc gacctcaaaa
    12841 gccgctttcg tcgacctacc gactttgatt tcttctttta tccgctcgta ggttattacg
    12901 ttcgcgtcaa cagccatacc tatccccaga atcaaacctg caatccctgg taaagtaagt
    12961 gttgcgttaa gcagactcag tattaatagt actaaataag tgtatgcaac taaagtgata
    13021 caagcaataa cgcctggtaa acggtaaact gccatcatga aaataaagat agcaatgacc
    13081 ccaataatac cagctaaaat tgtttcttgt aacgcatctt gcccaaattg agcaccaaca
    13141 gatgtcgagt aaacttcttt cattttaaca gggagtgcac cagagtttag caaatcagct
    13201 aaatcttttg cttcttccgt tgtgaaactt ccggaaattt ctactttatc tgtatcaagc
    13261 acgctactaa cgtttggtgc tgataagtaa gctgggtctt tcttctcgcg ttctgttttg
    13321 tatttttgtc cttctttcca atctaaccaa ataactaatt gattgtcagg cgcttccgct
    13381 agtattgttt ttgttacact agcaaattta tctgcacttt ttagttttag cgtaacgatt
    13441 gggttgttgc ttgaatcgaa agcttgtttg gcaccgcccg caactaagtc actaccattc
    13501 atcatcatct tgtcatttgc atctctaaat gataattggg ctgtggttga tagcattttt
    13561 cgtgcttctt cctgatcagt taccccagca agttgaacac gaatacggtt atccccttcg
    13621 atttgaatac ttggttcagc tacacctaat gaattgatac gcttgtcgag tgaagttacc
    13681 gtatctgtca atgtttgttt ggatacagtt cctttgccat cagctggtga aacttcatat
    13741 agaacttcga atcccccttg aagatccaag cctaggttga tgttttgcat aaccattttt
    13801 gcggtaccaa atacagcacc aaagataatt gcaactacta gaaagaaaat aactatctta
    13861 ctctttttta ccatttctgt ttcgttcctc cctcatctaa accataacaa atcccagtct
    13921 aacaacaaat acttctattt tatgtatgaa acccaagcat ttgctaacag gctgttaatc
    13981 ttccacattt ggttgaagca tactatctgc ttgagaaaca tggttattag attcttgttc
    14041 agctgttgtc ataataaatt gcattaattg tccaatattc atttgcataa catcatttat
    14101 acgttcatgc aaagcagggg ttggttcatt cttccacttt tcttctgtta aaaatgccca
    14161 aatgtggctt gccttgattt ctcggtaacc taaaatatga aaatcttcca cttttattga
    14221 aatcgctggc gctaaatctt cataccattc cgaaaatgta tccatatcaa gtcgtcccct
    14281 ttcttaaaca ataagcatat tcccatttta tctaaaaaaa gcttaaatgg gaagtataag
    14341 ctctattttt atggttaaaa aatgccattt caccgtttaa agggaaatgg catttttatt
    14401 tcaagtatta tttgttgtct tctacaactt cagtgtcatc agaagttgtt tctgctacaa
    14461 ctggattaga aactgcatta cctttttcaa gtacagttct gattgcgtta cggtcaaaag
    14521 ttaatttgct gtttccgcat ttcaaaatga ctgtgccatc ttcaattgct tcaacaatac
    14581 cgtgaagtcc accaatagta ataattttat caccttttgc taaactactt tgcatatttt
    14641 gtacttcttt ttgacgtttt tgttgaggtc tgattaataa gaagtaaaac aaaacgatca
    14701 tcaagataat tggtataaat gttacaatac cgcccatatt ttccaactcc tttcgatact
    14761 ttatatatat ttagaaattt tttgcatcag gacgattgaa tccatattgc tcaaaaaatt
    14821 cttccctaaa atcagcaaga cgatcttcca taatagcgcc acgaacttgc ttcattaagt
    14881 ttaacagaaa atgaagatta tgataagttg taagtcgaat tccaaatgtt tcctcacaac
    14941 gaatcaagtg tcgaatgtat gcacgtgagt aatttttaca agtataacag tcacaatttt
    15001 catcaattgg acggaaatca tgggtaaact tagcattttt aataactaag cgaccactag
    15061 atgtcataca agtaccattt cgtgcaatac gtgtgggaag aacacagtca aacatgtcca
    15121 ctcctcgaat tacgccatca atcaatgagt caggcgaacc tactcccatt agataacgtg
    15181 gtttattagc tggtagtagt ggtgtcgtgt gttccaaaac gcgattcatc acgtcttttg
    15241 gttcaccaac agacaatcca ccaattgagt atccagggaa atctagagat accagatctt
    15301 tcgcactttg cgcacgtaaa tcttcgtaag ctccaccttg gacgataccg aacaaacctt
    15361 ggtcttctgg tctaacgtgc gcttttaagc cacgttcagc ccagcgagat gttctttcta
    15421 ctgatttctt catatattca tgcgacgctg gatatggtgg acattcgtca aaactcatca
    15481 tgatgtcaga tccaagcgca ttttgaattt gaatcgcttt ttctggtgat aggaaaagtt
    15541 tgtctccgtt taaatggtta cggaaatgaa cgccttcttc tttgatatca cgcattttac
    15601 tcaaactaaa cacctgaaaa ccacctgaat ccgttaagat tggttgatcc cagttcataa
    15661 atttatgtag tccgcccgct tctcggataa gttcttctcc aggacgcaac cataaatgat
    15721 acgtattgct taaaataata cctgcaccca tggcttttaa ttcttcgggt gacattgttt
    15781 ttaccgtcgc aagcgtgcca actggcataa acataggtgt atcaaatgtg ccgtgcggtg
    15841 tatggatttt accaagacga gcacctgttt gtttatctgt tttaattagt tcataacgaa
    15901 tggcagacat gtgttacctc tttcttattt actctattca ctagcataac gaaaattacc
    15961 aatgaaaaca agcttttcta ttaatttttt cgcaatttaa tgaataaaca tggcatcgcc
    16021 aaaactaaag aagcgatatt gttcttctac agcatgatta taggctgcta aaattttcgt
    16081 gcggtccgat aaagcagaca cgagcataat taatgttgat tttggtaaat ggaaattcgt
    16141 tattagtgca tctactgcct gaaaagtata ccctggggaa atgaagatct ctgtccaacc
    16201 tgattcagcc actagtttgc cgtcatgacg actcgcaatt gtttctaatg ttcggataga
    16261 agtcgttcca actgcaacaa cttttccgcc ttgtgctttg attttattaa ttcgctcagc
    16321 agattcttct gttaaacgat aaaattcaga atgcatttta tgattggtag tatcttctac
    16381 gtccactggg cggaatgttc cgagccctac atgaagcgtc acgaaaatga tttctacacc
    16441 ttttgcgcta attttcgcca gtaaatcttc tgtaaaatga aggcccgctg tcggcgctgc
    16501 tgctgaacca ttctctttcg catagacggt ttgataacga tcctgatcag caagttgttc
    16561 tttaatgtat ggtggaagtg gcatctcgcc aagttgttct aaaacttcat aaaaaatgcc
    16621 ttcataagaa aattctaaaa tccgaccacc atgctcgagc tcttccaagc aaatcgcttt
    16681 taaagcacca tcaccaaaag taatggtagc accttttcga attcttttgg caggttttac
    16741 taaagtttcc catgcattgc cttctttttg tttcaaaagg agcacttcaa tgtgcgcgcc
    16801 agtttcatct ttaataccat gcagccttgc tgggagaaca cgtgtgtcat ttaatactag
    16861 tgcatcccct tcgtttaaat agctgataat atcagtgaaa tgttggtctt ttatgtcacc
    16921 tgacttttta tcaagcacca ttagccggct tgaagtccgg tctaatagtg gggtttgtgc
    16981 gattaattct tctggtaaat caaaatcgaa atcttctact ttcatgcttt atacctcttt
    17041 ttcataactt attcctaaat ggttatacgc cgtttcagtt gcgattcttc cgcgcggcgt
    17101 cctttgtaga aaaccgattt gtagtaaata tggttcttgc atatcttcaa tggtttctcg
    17161 ttcttctcca atacttgcag cgattgtatc cagtccaact ggaccgcctc taaatgattg
    17221 gataattgtg tggagcaatt tttggtcaat ggtatctaat cctcttggat ctacttgaag
    17281 caaagtaagt gcttctttcg ctagcttttc tgttaccgtt ccgtttcctc gaacttgcgc
    17341 gaaatcacgt acccgtttta ataaacgatt ggcaatccgt ggggttcctc ttgaacgtct
    17401 agctatttca cgtgcaccaa gatcatcaat ctttgtatct aatatattcg aagttctgag
    17461 tacaatttct gttaactgct cttctgtata aaattccaag tggtcaatta cgccaaaacg
    17521 atctctgagt ggtgccgata aaagtcccgc tcgtgtggta gctccaatca atgtaaatgg
    17581 tggtaagtct agacgaacag agcgcgcagt tggacctgtt ccaatcacaa tatccaaaca
    17641 ataatcttcc attgccggat ataaaatttc ttcaatcgct ctcgataaac gatggatttc
    17701 atcaataaat aaaacatccc ctggctcaag gcttgttaaa attgtcgcca agtcacctgg
    17761 tcgttcaatt gctggtccac tcgttgtttt aatttgactc cccatttcag ctgcaataac
    17821 cattgcaagc gttgttttac caagccctgg aggtccgtat aaaagcacgt gatccaaggc
    17881 ttcattccgg agtgtggcag cttctataaa aactgttaaa ttattcttta ctttgtcttg
    17941 cccaatatat tgtgaaaggt tctgtggccg caaactagtt tcaaaagata cttcttctgc
    18001 gtctaccgtt tcacttgaaa taattcgttc atccatgcca caagctcctc tctattttgt
    18061 cattaattgt agtgctagct tgatatatgc gtcgcttgtt aggtcttctt cttttgacaa
    18121 ttttggtatt acttttttta gttctcgcgt gctataaccg agcgcttcta aagctaatac
    18181 agcttcttct aattgcggag aaagtccagc aaccatatcg ttttctggag caacataaac
    18241 aatttcgctc gcgacaacat cagctagttt gcctttcaaa tcaagaatga tttggcgtgc
    18301 tgttttttta ccaacgcttg gaaatttggt taaataaaca tcgtcttcgg attcaatagc
    18361 agaaatcagt ggaacgacat cgcctgaagc aataatagct agcgcgcttt ttggtccaat
    18421 gcccgaaaca ctcaataatt ttttgaataa ataacgttct tctgttgttt gaaaaccgaa
    18481 tagagaaata ttatcctccc gcacatgttg atacaaaaag acttgcgctt ctgtaccttc
    18541 taatcgttga aaggaaaacg ggtttcctgt aattatttga tagccgattt gtcctgcctc
    18601 gacaacaata tattcgggtg taatcgtcgt aacggttcct tttatgtaat cgtacaattt
    18661 attcgtcctc tcttcatttc acgtcataca ttatatgata gcataaaacg gaacgtctgt
    18721 actagttttt gtttataaaa gaaacgctta tttagtttac ataataatat tattgacacc
    18781 ttaaatagat tgaatacttt ttttaataac cgccacagaa ttcgcaaatg cttctttttc
    18841 tttctcatct aattttaaag agatgatttc ttttacacca ttttgactta aaacggctgg
    18901 aactccgata gctagaccac tttctccgta ttcgccatcg agcacacaag acaccgttaa
    18961 agcacgctgg ctcccactaa atatatggcg acaaatctcg acaatcgtac cacctatgcc
    19021 gtattctgtg cagccttttt ggtggtagat ttcaaaacca gtatcccgag cagtttcacc
    19081 tatttgtttc aaatctagtg cctcgcctag tttttccaca ctatattcat tcactggttt
    19141 accataaata gatgaatggg accacacggg gaattgagaa tctccgtgct caccaaggat
    19201 aaaagcatcg atactttgag cagcaatatc tagtttttct gcgagtaaac ggcgtaacct
    19261 tgttgtatca agccataccc ccgttccgag tactcgttct cttggtaaac cggacaattt
    19321 ccacacttgg tatgtgatga tatcacacgg attcgtcgcg attaagaaaa taccattaaa
    19381 cccgcctttc atcatctcgg gcacaatgct tgaaacgatt cttgaagtac ttctcagttc
    19441 gtctaaacga gtttgtcctt cttttaaagg accagcagtt acagtgatta cagcgatatc
    19501 tacatctgca caatcgctcg catcacgaac agtaatatcc attttaccag gcataaatgc
    19561 agctgcatca gccaagtctt tccgattccc ttctacacgt tctttattta aatctacaag
    19621 aattaactct tccacaaatt tttgattaac aaatgcgtgt gctgcagctg ttcctacatt
    19681 tccagctcca attatcatta ctttacgcgg tttcatattt tcttcctcct agtgattcat
    19741 ataaaacacc cctattcaaa ttgtccgaaa aaggggtgtg ttgacttaat ttatctctgc
    19801 gttcgtataa acttcttgca cgtcatcatc atcttcaagt gcttctaaca ttttatcaaa
    19861 ttgtgtttga ttattttctg caacttcatt ataaaccgtt ggaaacatgg ataattcagc
    19921 agtagcaaaa gtgtacccgg cttcttgcaa agcctctttc acttccggaa aagtagccgg
    19981 atcagtaaaa atttcaaata catcttcgct tacttccaca tcatctgccc ctgcttcaat
    20041 agcctccagc atgaattcct cttcgtccac atctaaacct tcgcgtaaaa taacaagata
    20101 acctttacga tcaaacatat agctcacact accggtttca ccaagacttc caccgttttt
    20161 attaaaagct acacgaacat tggtgctcgt acgattttta ttatctgtaa gcgcatggac
    20221 aagaaccgca attcctcccg gcgcatatcc ttcataggtt acttcatcat aattttcgcc
    20281 actcgtatta ccagcagctt tatcaatagc tcgcttaata ttatcgttcg gcatgttgac
    20341 cgcttttgct ttatccataa ctaatcggag tgacgggttt aaattcggat caggaccttt
    20401 tttcgctgca acaaaaattt ctctcgctaa tttttggaat actttggaac gcttagaatc
    20461 ttgtgcattt tttctacctt gaatattatt ccattttgaa tgtcctgaca tatatttcac
    20521 tccttttaga tttagtaaag cttttctcct acaaattcta acgtaaaaag ggaggaatcg
    20581 caataaaaaa gttaccgcaa aaaattgcga taactcttta tttaagtcgt ttgtaagcgg
    20641 tgaacgtgat aagttccaag tttatttgcc gttccaccta aaagtgttat ttcatcaagc
    20701 gcattagtta cgagcgtttc tttcccttct gaaagtacat caatcaagaa aaagtactcg
    20761 cctaatgagg ttttaagcgg tcttgattcg attttactta aatcaatatc ccgccaagca
    20821 aacgtagata agactttatg taacgcacct ggcatattgt taggcaaaat aacagaaata
    20881 gacgtttttt cttcttcttt tggtaataaa attgaaacag gtttacgact taaaacaaaa
    20941 aatcttgttt gatttaattc caagtcttgc gcattttctt tgacgatttc aagcccgtac
    21001 tcattcgccg ccatgcgtgg tgcaatagct gcgacaagtt ctgtcggatt attactaacc
    21061 cattttgcag cataggctgt agaaggtgta acttcacgct ctactccata taattctgct
    21121 tgaagaaatg tatgacactg ggcaagtgct tgtgggtggg acattacttt ttgcactgat
    21181 ttccaagcgg atacgtgtgc tggatgaacc attaaatgtt gcgcaatcgg gagaacaatc
    21241 tccgctacta cagggacact tgaaaaatga aataagtagt ccagcgtgat atttacgctt
    21301 ccttcaatcg tattttcaat tggaacaaca gccacatcca cgtcttcctt ttcaattgcc
    21361 ataatacaat ctggaatcgt actcttagct atcatctctt cttttggaaa agcctttgct
    21421 gctgccgcgt gtgtaaaaga tgctgctggg cctaaataag caattttcat tttcaactct
    21481 ccttttatcg tagctaggaa aaaagcgtgc gccaactaat tggcgcagca ctttatttaa
    21541 tccataaatt caaattcata atcaagcagg cgaacgatat cgccgtcttt agcaccacgt
    21601 tttctaagcg cctcatcaac acccattgca cgaagctgac gagcaaaacg actaatagat
    21661 gcatcgcgct cgaagtttgt catcgtgaat aagcgttcaa tttttgcacc acttagtaca
    21721 aaagtaccgt ctggctctct agagatctcg aagtcaggtt cttcagcaac atatttgtaa
    21781 agaactgtat cttcgtcttc ttgttccaaa atttcattaa gtggaaattc tggagttgtt
    21841 tctaatttat ccgcaatagc aagaagtaat tcgcgaagtc ccgtttttgt taccgcagaa
    21901 attgggaata ccggaatatc ttcagcaatt tttgttttaa attcgtttaa attttcttct
    21961 gcatctggca tatccatttt attagctaca ataatttgtg gacgttccat taggcgcaag
    22021 ttgtactgtt caagttcatt attgatagcc atatagtctt cgtatggaac gcgtccttct
    22081 gagcccgaca tatcaatgac atgcacgata acacgtgttc tttcgatatg acgtaagaat
    22141 tgatgcccta aaccaacacc ttgactagcg ccttcaatta gacccggtaa atcggccata
    22201 acaaagctac gaccatctcc tgcgtcaacc attcctaagt ttggaacaat cgtcgtaaag
    22261 tgatacgcag cgatttttgg tctcgcagca gaaacaacag ataatagggt tgatttaccg
    22321 acacttggga aaccaactaa accaacatct gctaacactt taagttctaa ttgcacattt
    22381 cgttcttgtc caggttctcc gttttcagaa agttctggag ccggatttgc tggtgttgca
    22441 aagcgtttgt taccacgtcc gccacgtcca gcttttgcaa taactgcgcg ttgaccatgt
    22501 gcgactaaat cagcaataat ctcacccgta tcaatatctt ttacaatggt tccttgtggt
    22561 actttgacaa ctaaatcttc tgcgccgcgt ccatgcatac ttttactcat gccatgttcg
    22621 ccgtgctctg ctttaaagat tcgtttaaag cggaaatcaa ccaatgtacg cagaccttca
    22681 tctactacaa atacaacgtc tgctccttta ccaccgtcac cgccagcagg accaccgttt
    22741 ggtacaaatt tttcgcgacg gaatgctacc ataccgtc
//
LOCUS       DABQVC010000021        22601 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.021,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000021 DABQVC010000000
VERSION     DABQVC010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 22601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22601
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.021"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..322)
                     /locus_tag="IBJ56_000557"
     CDS             complement(<1..322)
                     /locus_tag="IBJ56_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416841.1"
                     /translation="MDNKLEFTTIDEYITQAPPETKEVLQKIRETIKAAAPEATEKIS
                     YQMPTFYLEGNLVHFAVAKNHYGFYPASSGIAAFESKLGNYKHSKGAVQFPIKEEVPY
                     ELIKE"
     gene            complement(377..862)
                     /locus_tag="IBJ56_000558"
     CDS             complement(377..862)
                     /locus_tag="IBJ56_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HAM3416842.1"
                     /translation="MEPINHFFEWAKNNNWQVDLSAVEKNLPEQILKRYGKLPDAYKA
                     FYRQLNLCSNVGDTCWFLLEEDFLENEDDAFSWNSFEQMSLEAAEGDTNLENEVKLFW
                     NAHLPIMMSVGGCYEYYAITLNDGNIVHGSEPEFEESSIVADSFADFLLKIVAGEIVI
                     S"
     gene            complement(878..1318)
                     /locus_tag="IBJ56_000559"
     CDS             complement(878..1318)
                     /locus_tag="IBJ56_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADAR family protein"
                     /protein_id="HAM3416843.1"
                     /translation="MKVIHFYSENADYGCFSNFSLHPIVIDGVTYPTTEHYFQAQKFI
                     DKKIIKKVINTKKPIDAAKLGRNRDFPLRKGWESMKDEVMLKAIRAKVAQHSEVKEML
                     LTTENAILVEHTENDHYWGDGGDGSGKNRLGKILMKVRDEWNSK"
     gene            complement(1471..1558)
                     /locus_tag="IBJ56_000560"
     tRNA            complement(1471..1558)
                     /locus_tag="IBJ56_000560"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1522..1524),aa:Ser,seq:gct)
     gene            complement(1562..1634)
                     /locus_tag="IBJ56_000561"
     tRNA            complement(1562..1634)
                     /locus_tag="IBJ56_000561"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1599..1601),aa:Asn,seq:gtt)
     gene            complement(1687..2154)
                     /locus_tag="IBJ56_000562"
     CDS             complement(1687..2154)
                     /locus_tag="IBJ56_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HAM3416844.1"
                     /translation="MNQAELQRHMEEVSLQFFQKEFRHQAVFNARLRTTGGRYLLKSH
                     NIEMNPKYLENFGLAYFIGIMKHELCHYHLHLEKKGYQHRDQDFRELLKKVDAPRFCA
                     TIPREITMHEYTCKSCGKSFLRQRRFNVNRYRCGSCGGKLIQTGSKKIYTENA"
     gene            complement(2154..4331)
                     /locus_tag="IBJ56_000563"
     CDS             complement(2154..4331)
                     /locus_tag="IBJ56_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HAM3416845.1"
                     /translation="MEQMQDKIIKLVQKSLTYKPAQINAVIKLMEEGNTVPFIARYRK
                     EMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLIDEQGKLTDELRAAITKAEKHQAL
                     EDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSNADPLKEAANYISEEKEVESAEA
                     ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMI
                     GKVASHRILAFNRGEKEDILRVQVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAIMDA
                     YKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKGKIILGVDPAFRTGC
                     KFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYKVEVIAIGNGTASRETEQ
                     FIVEVIRESKSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLA
                     ELVKIDPKSVGVGQYQHDVAQKRLNETLTFVVETAVNQVGVNVNTASASLLQYVAGLN
                     KTVANNIRKYREENGSFASRKELKKVPRLGAKSYEQSIGFLRILEGENPLDKTAIHPE
                     SYKAAEQIVKAAGFGLKDIGSEDLKAALQALSIPEEAEKLSIGKETMRDIIDNLIAPG
                     RDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLS
                     NSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMLNPNGSVK"
     gene            complement(4402..6033)
                     /locus_tag="IBJ56_000564"
     CDS             complement(4402..6033)
                     /locus_tag="IBJ56_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HAM3416846.1"
                     /translation="MKKVWLNSVKDYTWARFRKDLLAGIIVGIIALPLAMSFAIASGV
                     SPEYGIYSSFVAGIIVSIFGGSKFQIAGPTGAFIPVLLGIVLTYGYQDLLVAGMMAGV
                     LLCLMGIFKIGTLIKFIPRPVTIGFTAGIAVTIFMGQVGNFLGLTGMEKHESFVANMN
                     EIWLHLDSWNFYSVFISCICMLVLFIFPKILPRIPAPLIGLVITTAIAMLFFPDALPT
                     IGSAYGDIPSTFPPFEFPDMTFANMSKLIGPAFVIAMLGGIESLLSAVVADGMTNTKH
                     NSNRELIGQGIANIVTPMFGGIPATGAIARTATNINNGATSRVSGVIHGIFVLLTLLV
                     LAPVAVNIPIAAMAPILMLVAWNMSERKTFQHIIKLKSGDTLVLIITFLLTVFASLTV
                     AVEVGLLLAVVLFAKQMGSSMQIEEIEPEGAEIAPHLHEKISIFTIRGPLFFGAAQIF
                     QQNIIKAIHVKPKYLILRMGKVPIIDATAEGYFHQIEKEFSKQGGQILITGLTDKAKE
                     SLKGSGLYDRIGEEHFFSHTEDAIHYAENALNKGD"
     gene            complement(6238..6837)
                     /locus_tag="IBJ56_000565"
     CDS             complement(6238..6837)
                     /locus_tag="IBJ56_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HAM3416847.1"
                     /translation="MNKAVESNNLFVFQRSKALQQYCGDVYYTHEDENGFLYVLSDGL
                     GSGLEANRAAKATVDAIKEDIHADITDMLEKANQAVSGLRGAAIAIIKGDYLTKTLYY
                     TGMGNIRFYMIGMEDKLIFPLSGSGFLSGRKQKYRLQSFKYKPGSKFLMHSDGLVLSR
                     VRKSLESPLCVVKIGHLIERNILDIPTDDVTFMVGKFPE"
     gene            complement(6838..7617)
                     /gene="sigB"
                     /locus_tag="IBJ56_000566"
     CDS             complement(6838..7617)
                     /gene="sigB"
                     /locus_tag="IBJ56_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigB"
                     /protein_id="HAM3416848.1"
                     /translation="MPKVSQPDKEAKEKVYIWIAAYQENGDQDAQYNLVVHYKNLVES
                     IARKYSQGKSFHEDLVQVGNIGLLGAIRRYDATFGKSFEAFAVPTIVGEIKRFLRDKT
                     WSVHVPRRIKELGPKIKNAVEELTRELQSSPQISDIADFIGVTEEEVLEAMEMGKSYQ
                     ALSVDHSIEADSDGSTITLLDVVGGTDDGFERVNQRMLLEKVLPVLDEREQKILQFTF
                     IENRSQKETGELLDISQMHVSRIQRQAIKKLREALQNEEVE"
     gene            complement(7595..8068)
                     /gene="rsbW"
                     /locus_tag="IBJ56_000567"
     CDS             complement(7595..8068)
                     /gene="rsbW"
                     /locus_tag="IBJ56_000567"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma B factor RsbW"
                     /protein_id="HAM3416849.1"
                     /translation="MATMHDKITLQLPAKPEYVSLGRLSLSGIASRAGFSYEAIEDLK
                     IAVSEAITNSVKHAFKGEDDGEITVEYLIYEDKLEVRVSDNGTSFDLETRKQEIGPYE
                     VGEDAEMMRIGGLGLFLIETLMDDVKLYYDEGVSVVMTKYINEKQVEENAKSIST"
     gene            complement(8052..8396)
                     /locus_tag="IBJ56_000568"
     CDS             complement(8052..8396)
                     /locus_tag="IBJ56_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464419.1"
                     /note="This anti-anti-sigma factor, or anti-sigma factor
                     antagonist, belongs to a family that includes
                     characterized members SpoIIAA, RsbV, RsfA, and RsfB;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor antagonist"
                     /protein_id="HAM3416850.1"
                     /translation="MNISIEIKERDTDHIDIFVAGEIDAYTAPKVKEALEVYQVKEGI
                     VLRIDLTEVSYMDSTGLGVFVGAFKSLRQRQSELVLFGLSDRLFRLFEITGLSDIIEI
                     KNVEGEMNGNNA"
     gene            complement(8546..9550)
                     /locus_tag="IBJ56_000569"
     CDS             complement(8546..9550)
                     /locus_tag="IBJ56_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HAM3416851.1"
                     /translation="MEKAFEGKYRDILIQYLEHQDEEILYTCEKLSREAMEERVSPEE
                     IVHLHRSVLELYGKELPDFVRLSFDVLLEIMVGYGLAYMEHLSLRTEQKELRSEIAQA
                     EDMQKTLMKTEVPEHDELDFGVISVAARQMSGDYYSFTEEGDKQIGIALADVIGKGIP
                     AAFSISMIKYALAGMTGDDRKPSIVLESLNQVAEENINDNMFITMFYGLYHEDTHLFE
                     YGSAGHELGLYYQHKENSFSDLYAKGLPLGVDKNAVYRQFDKKIEVGDAIFIMSDGVT
                     ETRTANGFLEREELTEIIAAHISLSAEKMVHAIYDQLVKMQNFELHDDFTLICIKRTK
                     "
     gene            complement(9567..9977)
                     /locus_tag="IBJ56_000570"
     CDS             complement(9567..9977)
                     /locus_tag="IBJ56_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma regulatory factor"
                     /protein_id="HAM3416852.1"
                     /translation="MTFQSCVKIINEWDIVAARQLGRKISKEIGFGTVDQARITTAIS
                     ELARNIFLYAGRGEICIEKVNESGKQGMIIVAKDKGPGIVDIRKVMQDGYTTSGGLGA
                     GLPGVKRLMDSFDIESSIEGDSKGTVITTTKWVR"
     gene            complement(9980..10336)
                     /locus_tag="IBJ56_000571"
     CDS             complement(9980..10336)
                     /locus_tag="IBJ56_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HAM3416853.1"
                     /translation="MGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGV
                     VIDITSIDFIDSFIAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSA
                     MDLESGLEKLKQELGE"
     gene            complement(10342..11178)
                     /locus_tag="IBJ56_000572"
     CDS             complement(10342..11178)
                     /locus_tag="IBJ56_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HAM3416854.1"
                     /translation="MYKDFANFIRTNKADLLNDWMNEMEKQSDQLINDIAKEAMYEET
                     SKEFVDLIVSNVTENGSKFNEKLDDFAEKVVHLGWPIHFVTTGLRVFGLLVYTAMRDE
                     DLFLKREEKPEDDAYYRFETWLSSMYNKVVTAYADTWEKTVSIQKSALQELSAPLLPI
                     FEKISVMPLIGTIDTERAKLIIENLLIGVVKNRSEVVLIDITGVPVVDTMVAHHIIQA
                     SEAVRLVGCQAMLVGIRPEIAQTIVNLGIELDQIITTNTMKKGMERALALTNREIVEK
                     EG"
     gene            complement(11429..11776)
                     /locus_tag="IBJ56_000573"
     CDS             complement(11429..11776)
                     /locus_tag="IBJ56_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003253417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HAM3416855.1"
                     /translation="MMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIV
                     AAITAKIQKAKLPTHVEATRKDGFERDSVILLEQIRTIDKQRLTDKITHLDEDLMAKV
                     NKALEVSLGVVEF"
     gene            complement(11780..12058)
                     /locus_tag="IBJ56_000574"
     CDS             complement(11780..12058)
                     /locus_tag="IBJ56_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family ribbon-helix-helix protein"
                     /protein_id="HAM3416856.1"
                     /translation="MLEKEKRMIISVELTQEMIQELDVVVEKEKMGRSEVIMEATQQF
                     LQEKRARELRDEMERGYAEMATINFAIACECTHVEAEAEDRNISILGG"
     gene            complement(12264..13370)
                     /locus_tag="IBJ56_000575"
     CDS             complement(12264..13370)
                     /locus_tag="IBJ56_000575"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HAM3416857.1"
                     /translation="MVTGWHRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAY
                     GHGIIEVARTAKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKEDANLAAKNH
                     ISLTVFREDWLEDLTLEAPLRIHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEG
                     IYTHFATADQLETSYFEQQLAKFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRF
                     GISMYGLTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEREWVA
                     TLPIGYADGLIRHYSGFHVLVDGELAPIIGRVCMDQTIIKLPREFQTGSKVTIIGTDH
                     GNTITADDAAHYLDTINYEVTCLLNERIPRKYIH"
     gene            complement(13389..13745)
                     /locus_tag="IBJ56_000576"
     CDS             complement(13389..13745)
                     /locus_tag="IBJ56_000576"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HAM3416858.1"
                     /translation="MIKGIGLDMIDLERVKQVVEKNPRFIERVLTEKEIKQFEKYEGN
                     RKIEFLAGRFAAKEAYAKANGTGFGKHLSFTDVEILQVEDGRPHVTLPVKSGENVFVS
                     ITHTARSAAAQVIIEI"
     gene            complement(13747..15126)
                     /locus_tag="IBJ56_000577"
     CDS             complement(13747..15126)
                     /locus_tag="IBJ56_000577"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HAM3416859.1"
                     /translation="MKHIVIIGGGLSGLAAAYELQKTHPNYTWELVEKDKKLGGKFET
                     VKRDGFLIEKGPDSFLARKPAGVGLVKDLGLEDKLIANATGRSYIYHQKALHPIPEGS
                     VMGIPTDKEALLASTLVSEIGKARALQEPTMERNNQEQDQALGEFFEARFGKELVKTI
                     IEPLLSGIYAGDIYKMSLRATFPQFEQAVKKYGNLMDGLKESSMQTTGTKATIGAFRT
                     LEGGLDALPKAIAAALPKENLHTAKQATNITKKNSSYEISFVDGDKMEADGVIIAATH
                     DALIHLLAEKTTEPFAGQPLTTLATVSLAYNEQDVPILPDGTGYLVARTAPYKTTACT
                     WVQKKWPHMVPENKMLLRGFVGKAGETWLEQASDEAIVSAVLRDYAEMMDLHAAPLFY
                     EVSRMKSAMPQYLVNHQDRLKQLKKNIKADYPGVYFAGMSYEGVGIPDCIAGAQTAAK
                     ELVDYLEEV"
     gene            complement(15276..16751)
                     /locus_tag="IBJ56_000578"
     CDS             complement(15276..16751)
                     /locus_tag="IBJ56_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HAM3416860.1"
                     /translation="MFEERRLHPIALIKEIITNVRRNIVPIVVGLFSVFRAINSNGYL
                     PDWAVYLIIVIVILLILTPAVLKYITYKYTLEDQGIRIKYGLIFRKNTYIPYERIQTV
                     QKKQWFFFIPFNVCQILIETAGGNGKTEADLVAVPVGVVDELNDLRDGKKRDIQEAVP
                     ETEETTVEVAEAPEKTVMLQTKQLILMAVTSGGVFGTLLIVLAFMQQFREVIPTDWME
                     AQAEELWKMGIIVLIVLIVLILLVLWGISIVTTLFKYFQFKLMKYPNSLVVEKGLLER
                     NHTTISLSRIQGITIIESPLRQMLGLVAVKVTTAGNSGDEKLSGDILLLPIMKKALAL
                     KTLKEMLPDYLFEIEKMERAPKASLRRFLQIYLIWTIIPAAVASILFFPLGLISIILP
                     VLAGIKGVTSYRATGVFTDKHTLLVQSRPIFSKLTHIIRKERIQGLSLRQSIWMEKGG
                     SRHLNVWLKSGSTSAEAYVRYINQDLAIKVYNWYSPSKTIN"
     gene            complement(16744..17226)
                     /locus_tag="IBJ56_000579"
     CDS             complement(16744..17226)
                     /locus_tag="IBJ56_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HAM3416861.1"
                     /translation="MELDNLEKKLPEKIKTVWRQTEGIAVLTFLLCSVVAAIILYYAG
                     ASVWWSAIGFGLTVLYAAFIYLFIIPFRFARWSYQIKPDEMEIQHGIIFRSRVLIPMI
                     RIQHVETEQGPLLRRQKLVSLSITTAAKTHKIEAVNESESDELRHHILELVKVAKEDV
                     "
     gene            17359..17835
                     /locus_tag="IBJ56_000580"
     CDS             17359..17835
                     /locus_tag="IBJ56_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416862.1"
                     /translation="MKKKGYILLIIALLSLTLNWLPEIAHAQKEATGTTYTTATTNEL
                     MDMFLPYSIQNPYIETTKNSAELMFVTEEAATITTETNNQTQSIAGSTENHQFALANL
                     QPGNNLVTITATMTDGTSESKTITINLPEKPKKNSKSFHDHSKNQQVTHRKKGHLL"
     gene            complement(17881..19269)
                     /locus_tag="IBJ56_000581"
     CDS             complement(17881..19269)
                     /locus_tag="IBJ56_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HAM3416863.1"
                     /translation="MKKRWLVFAIICLIITGFLSPKAEAATDYGSSFFTNVSLQNQNG
                     EQTTNFKENSKVRVAYDFVITQPVASGETMTLTIPNQLKLINYGGFPLMDSQGNTIAN
                     ATVDQATGTITLTFTDYVNTHTDLSGSLFYNATFNSKNIQTDQVNPIAFPVKNSTQTI
                     NAFISKVNTGGGTGSPTIVFKQGRMDDKDLSILHWTVTLNNALTPIDNSVYTDTLGSG
                     QNLLGSATIKYRDANKKVITTNIQPITLDADRNFELSIGTLNNQSVVITYDTKITTKQ
                     KSYTNKATLSGDNLEAVSRNATVNDYGSGGQGTGTPPAPPVKEEPPFIPAEKQPIEKT
                     VETDFGPLEIVKDSEQNGKIKVIYKVKDGDTLPGVANKFDVSVAEIKDWNNLTSDTLQ
                     AGQKLQLTIEKTLLSKITIPPVQKVTSTTSVDGVVKATGVLPHTGDSNPFIPFVTGVS
                     LVALGFTFGRRN"
     gene            complement(19387..20154)
                     /locus_tag="IBJ56_000582"
     CDS             complement(19387..20154)
                     /locus_tag="IBJ56_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HAM3416864.1"
                     /translation="MNIKEKIAVQLYSVRKEMERDLEGTLRKMHEIGFRYVQLDGMRG
                     NDPSEVRRLLQKYELKVIGMHIKHDRFMNDLDGIIEEAYFFDCKTVFDKYIEEEDQTT
                     AGYTATKAALINAAEKLHPLGFRIGLHNPEYDFNECIHGRRVMDYITDPVDGICIYAE
                     PDTYWIRAAGHDETEFIKRYSGRAPIVHMKDFVSGFELEDMDNNLVEIGQGEVDFRAI
                     IEWGEANGVEYYCIEQDRSKRAMFETLEASYQYLLQL"
     gene            complement(20172..21125)
                     /locus_tag="IBJ56_000583"
     CDS             complement(20172..21125)
                     /locus_tag="IBJ56_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAM3416865.1"
                     /translation="MEKIIVNGRKNGQKIEIACSNLVMGAGDFLRADNMDFAGPVLDQ
                     YFEMGGNIFDTARHYRHSEKAIGAWMNMRGNRDSVIIQTKGGHPVREASDVPRVTPEA
                     IHEDISVSLDTLQTDHVELFALHRDNPDVEVGPIMEAMHKEVEDGRVYAIGLSNWELP
                     RIIEANEYAVSHGLTPLSFNSPNFSLAKVNRPRWENCVSASEEMIRWHEATNLPLFSW
                     SSQAGGFFSGRFSEEDTRDTEMVEVYYSEANWERYSRAKQLANQKGCTPIQISLAYVL
                     TQSFPTAAVIGPENATELQSSVAAAGIKLTASEVDWLDLKA"
     gene            complement(21125..21853)
                     /locus_tag="IBJ56_000584"
     CDS             complement(21125..21853)
                     /locus_tag="IBJ56_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HAM3416866.1"
                     /translation="MKLIINENEQLVAQTVSQRIIELVKEKPASLICIAGGDTPLLTI
                     EAIIKANQTGEVDFSETQFVGLDEWVGLGRETKGSCIQTLYDAFFDRLKNVSSEQICF
                     FDGKATSLTDECARVDKFIDDRGGMDFILLGIGLNGHIGFNEPFVPVDVNCHVVELDD
                     VTKRVMSKYFDTDLPLTHGISLGMQQILAAKEIYLVATGEKKIDIVKQVVEKEPTVAI
                     PATLVKDSNTTLVVDKIAASGVEA"
     gene            complement(21874..>22601)
                     /locus_tag="IBJ56_000585"
     CDS             complement(21874..>22601)
                     /locus_tag="IBJ56_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3416867.1"
                     /translation="LMQSVTSGQIIPEAFTTMLAPAINSIDTPYAVFLICFLEMLFWF
                     IGLNGYAILIGFVLPFMTQYLGANAAAYAAGEPIPHVFAPNFWDYFMGFSGSGITGAL
                     VILALFSKSRELKAVGKVSVVPAIFTISEPVVFGLPICFNPYLFIPFVLGTPILAVGQ
                     WFVFHFGWVRPPIANVGGTPIPLAQYLATMDWRAIILIIFVLAAAVCMYYPFFKMYEK
                     SLIKEEEVVSERQAAHDALDLDF"
BASE COUNT         6270 a         4981 c         3856 g         7494 t
ORIGIN      
        1 tttctttaat taattcataa ggaacttctt ctttgattgg aaactgtaca gcaccttttg
       61 aatgcttgta atttccgagt ttagattcga atgccgcaat accactagag gctggataaa
      121 acccgtagtg atttttcgca acagcaaagt gcaccaagtt tccttccaaa taaaaagtcg
      181 gcatttgata actgattttt tctgttgctt ccggtgcagc tgctttaatc gtttctctga
      241 ttttttgcaa cacttctttt gtttccggtg gcgcttgggt aatatattca tcaatcgttg
      301 taaattctag tttattatcc atagtcgatt cctttctgaa acgtttttct tattatagca
      361 aatttcctaa ttaattttaa cttatcacta tttctccagc cacgattttc agtaaaaaat
      421 ccgcgaacga gtctgctaca atcgaacttt cttcaaactc tggttccgaa ccatgaacaa
      481 tatttccgtc atttaaagta atagcataat attcataaca accgccaaca ctcatcataa
      541 ttggtaaatg tgcattccaa aatagtttta cttcattttc taagtttgta tcgccttctg
      601 ctgcttctaa actcatttgt tcaaaagaat tccacgaaaa ggcgtcatcc tcattctcta
      661 aaaaatcttc ttccaacaaa aaccaacaag tgtcacccac attgctacag aggttaagtt
      721 gtctataaaa ggccttatat gcatctggca actttccata tctctttaaa atctgctctg
      781 gcaagttttt ctctacagca gacaaatcta cttgccaatt attattttta gcccattcaa
      841 aaaaatgatt tattggttcc atttaagcta cctcccacta tttagagttc cattcgtctc
      901 tgactttcat caaaatcttg cctagacgat tttttccaga gccatctccg ccgtcgcccc
      961 aataatgatc attttccgta tgttccacta aaatagcatt ctctgtggtt aaaagcattt
     1021 ctttcacttc cgaatgttgc gctacttttg ctctgattgc ttttaacatc acttcgtctt
     1081 tcatactttc ccagcctttt cgcagtggaa agtctctatt tctacccaat tttgctgcat
     1141 ctattggttt tttcgtatta attacttttt taataatttt tttatctata aatttttgtg
     1201 cttggaaata gtgttctgtg gttgggtaag tcacgccgtc tatgacaatt ggatgtaaag
     1261 agaaattaga gaaacagcca tagtccgcat tttcactata aaaatggata accttcattt
     1321 tgcacctccg agtatttacg ttatgttatt tgcaacttga gcttatcttt caaaataact
     1381 ttagcataca tatagacgca aatctatcgc tatttttccg taaaaaaaga cactgcttag
     1441 tttcctaaac aatgtcttta taagttatta cggagaagga gggatttgaa ccctcgcgcc
     1501 gcgcgagcga cctataccct tagcaggggc acctcttcag ccacttgagt acttccccaa
     1561 actccacagg caggactcga acctgcgacc gatcggttaa cagccgattg ctctaccaac
     1621 tgagctactg tggaattatc tgacttccac tagtatacgc agaacttagc aaaattgcaa
     1681 gacttttcat gcgttttctg tataaatttt cttggaacct gtttgtatta attttccacc
     1741 acaactgcca cagcgataac ggttcacatt gaatctgcgt tgtcttaaaa aggacttccc
     1801 gcaacttttg catgtatatt catgcatggt aatttcacgt ggtatcgttg cacaaaatct
     1861 cggtgcgtct acttttttta ataactcacg gaaatcttga tcgcgatgct gatagccttt
     1921 tttctctaaa tgaaggtgat aatgacatag ttcgtgcttc ataatcccga taaagtacgc
     1981 taatccaaag ttttctaggt acttggggtt catttcgata ttatgacttt ttagcaaata
     2041 acgtccccca gtggttcgta agcgcgcatt aaacacggct tggtgacgaa attctttttg
     2101 gaaaaattgc agtgacactt cttccatgtg tcgctgcaat tctgcttgat tcattattta
     2161 acacttccat taggattaag catagttaaa gcaatacggt ttttctttgt atctacttca
     2221 tctacccaaa cagttacaac gtctcctact gaaacgacat ccatcgggtt tttaacaaaa
     2281 gaattgctta gtttcgaaat atgcacaagg ccgtcttgtt tcacgccaat atcaacaaat
     2341 gcgccaaagt caactacgtt ccgaacggtt ccttgtaatt ccatgccttg ctttaaatct
     2401 tccatcgaaa taacatcttg ttttaaaagt ggtgctggaa gttcgtcacg aaggtcacga
     2461 ccaggagcaa ttaaattatc aatgatatcg cgcatggttt ctttaccaat gcttaatttc
     2521 tctgcttctt ctgggatact aagcgcttga agtgcggctt ttaaatcttc gctaccaata
     2581 tctttcaatc cgaaaccagc tgcttttaca atttgttcag ctgccttata actttccggg
     2641 tgaatggcgg ttttatcaag cggattttca ccttccaaaa tacgtaagaa accgatactt
     2701 tgttcatacg attttgcccc aagacgaggt acttttttca actctttacg agaagcgaac
     2761 gagccgtttt cttcgcgata tttacggata ttatttgcga ctgtcttgtt taagccagca
     2821 acatattgta acaaagaagc cgaggccgta ttaacgttta cgcccacttg gttaacggcc
     2881 gtttcaacga cgaaagttag tgtttcattt aaacgttttt gcgctacgtc atgttgatat
     2941 tgccctacgc ctacagattt tggatcgatt ttcacaagtt cagctagcgg atcttgcaaa
     3001 cgacgaccaa tcgaaacagc gctacgctct tctacttgat agtctgggaa ttcttcgcgg
     3061 gccgtttcac tcgctgaata aacactcgca ccagcttcat tgacgataca ataataagca
     3121 ttcgatttcg attcacgaat cacttccaca ataaattgct ctgtttcacg tgaggctgtt
     3181 ccgttaccaa ttgcgataac ttccactttg tatgtggata aaatctccgc aattttttgt
     3241 ttggcttccg gacggcgtgc ttttgctgta tgtggataaa caacgccaat ttctagtact
     3301 ttccccgttt gatctaatac agagaattta caacctgttc taaaagccgg atcgacccca
     3361 agaatgattt ttccttttaa aggtggttgt aaaagtagtt tgcgcaagtt ctcggagaaa
     3421 atatggatgg cttgttcttc gcctttttct gttagttcac cgcgaatttc acgttcaatt
     3481 gccggtccga taaagcgttt ataagcatcc attatagctt cttctacgta tggtcgtgtt
     3541 gcagaattac ggttttggat aactttttca aataaatatt ggaaaatttt tgtcgtatct
     3601 acttggactt gtacacgtaa aatgtcttct ttctctccgc ggttaaatgc aaggatgcgg
     3661 tgacttgcta ctttgccaat catttcgtta aattcataat acatttcgta aacgcctttt
     3721 tcgtctgctt cggcgttttt cgctctggat tcaatcatcc caaatttgcg cgtaaagtta
     3781 cgaatccact cacggaaact aggctcatca ctgatttgtt ccgcgatgat ttcatgtgcg
     3841 ccgagtaaag cagcttctgc tgactccact tctttttctt ctgaaatata gtttgccgct
     3901 tctttcagtg ggtccgcgtt acttgggaag ctcattagcc aatcagcaag cggttctaat
     3961 cctttttctt tcgcaatcgt tgcttttgtg cgtttctttt gtttgtaagg acggtataaa
     4021 tcttcgagcg cttgatgttt ttccgctttg gtaattgccg ctctcagttc gtctgttaat
     4081 tttccttgtt catctattag gcgaataatt tcttctttac gattttctaa ttttgttaca
     4141 tattcaaagg tttcttcgat atcacggatt tctacttcat ctaagctacc agtcatttct
     4201 ttacggtacc gcgcgataaa tggaactgtg ttgccttctt ccattaattt gataacggca
     4261 ttgatttgcg ctggtttata cgttagcgat ttttggacta gttttattat tttatcttgc
     4321 atttgttcca tacttgatag cctccaatta tttcattatc tactaagtgt aacataatta
     4381 cgtttcaact gacaaaagct atcagtctcc cttatttaaa gcattttccg cataatgaat
     4441 cgcatcttcg gtatgggaaa agaagtgttc ttcgccgatt cggtcgtaaa gcccgctacc
     4501 cttcaaactt tctttcgctt tatctgttag tccagtaatc aaaatttgcc cgccttgctt
     4561 cgaaaattct ttttcaattt ggtggaaata gccttctgcc gtagcatcaa taatcggcac
     4621 tttccccatt cgcaagataa gatattttgg tttaacatgg attgctttga taatattttg
     4681 ttggaaaatc tgtgctgcac caaagaaaag cggcccacga atagtaaaaa tactaatttt
     4741 ctcgtgtaaa tgaggagcaa tttcggcgcc ttctggttcg atttcttcaa tttgcatcga
     4801 acttcccatt tgtttagcga aaagcaccac tgccagcagt aaaccaactt cgacggccac
     4861 agttaagctt gcaaatactg ttaataaaaa ggtaataatt agcactaaag tatcgcccga
     4921 tttcaactta ataatgtgct ggaaggtttt tcgttcactc atattccaag caactagcat
     4981 taaaatcggt gccattgcag caattggaat attgacagct actggtgcaa gtacaagtaa
     5041 agtgagtaaa acgaaaatcc cgtggataac gccagagaca cggctagttg cgccattatt
     5101 aatgttggtt gccgttcttg cgatagctcc cgttgcggga attccgccga acattggcgt
     5161 tacaatattt gcgatacctt gcccaatgag ctcgcgatta ctattgtgtt ttgtattcgt
     5221 cattccatct gccacaaccg ctgaaagaag tgattcaatc ccgccgagca tcgcaataac
     5281 aaaagctggc ccaatcaatt tactcatatt cgcaaaagtc atatcgggaa attcaaacgg
     5341 aggaaaagta ctcggaatat ctccatacgc tgacccaatc gtcggaagcg catccgggaa
     5401 aaatagcatc gcaatcgccg tcgtaatcac aagtccaata agtggtgctg gaattctcgg
     5461 taaaatttta ggaaaaataa ataagacaag catacaaata caggaaatga acacactata
     5521 gaaattccat gaatctaaat gtaaccagat ctcattcata ttcgcgacaa atgattcatg
     5581 tttttccata cctgttaaac cgaggaagtt ccccacttgc cccataaaaa tcgtgacagc
     5641 aatcccggct gtaaatccga tagttacagg acgcgggata aatttaatta aagtcccaat
     5701 tttaaaaatc cccattaagc aaagtaagac ccctgccatc attccagcaa cgagtaaatc
     5761 ttggtaccca taagttaata cgattcctag taaaactgga ataaaagcac cagttggacc
     5821 agcaatttga aacttcgagc ccccgaaaat agaaacgatt attcccgcta caaaactcga
     5881 ataaatccca tattctggac ttacacctga tgcaatcgcg aaggacatcg ctagtggtaa
     5941 agctataatg cccacgataa ttcccgcaag caagtctttc ctaaatctcg cccacgtata
     6001 atcttttaca ctattcaacc aaactttctt caatttgctc cttctctctt atttatattt
     6061 taatccgcgc gaaaaaacgc aaagcaagat tgcttcacgc ttattaagtg atatttatca
     6121 catgatgaag tataaaaaac tagcgctcta ttctaatata ccataaatag actaagttct
     6181 catgtccatt aagaaaaaac accttttaaa ctaggaatca tttaaaaggt gtttttgtta
     6241 ttccggaaat ttcccaacca taaaagtaac atcatctgtt ggaatatcta atatattacg
     6301 ctcgattaaa tgcccgattt tcactacaca aagtggcgat tctaggcttt ttctaacgcg
     6361 agaaagaaca agtccatctg aatgcattaa aaacttactg cctggtttat atttaaacga
     6421 ttgcaaccga tatttctgtt ttcgaccgga caaaaatcca gagccagaaa gcggaaaaat
     6481 aagcttatct tccatcccaa tcatataaaa acgaatatta cccataccag tataataaag
     6541 ggtcttcgtt aagtagtcac ctttaataat agctatcgca gcacctcgaa gtcctgaaac
     6601 agcctggttc gctttttcga gcatatcggt aatatctgca tggatatcct cttttatggc
     6661 atcaacggtc gctttggcag ctctattagc ttcgagcccg cttccaagtc catcagaaag
     6721 aacatacaga aaaccatttt cgtcttcatg ggtataataa acatccccgc agtattgttg
     6781 taatgcttta gaacgttgaa atacaaataa attatttgat tcaactgcct tgttcattta
     6841 ctccacttcc tcattctgca acgcctctcg aagtttttta atagcttgac gttggattct
     6901 agacacatgc atttgtgata tatcgagtag ttcacccgtt tctttttgac tgcgattttc
     6961 aataaatgta aattgcaaaa tcttctgttc tcgctcatct aaaacaggga gaactttctc
     7021 taagagcata cgttgattca cacgttcaaa tccatcatcc gtaccaccaa caacatctaa
     7081 taaggtaatt gtacttccat ccgaatcagc ttcaatcgaa tgatctacag aaagcgcttg
     7141 gtagcttttt cccatctcca ttgcttctaa aacttcttct tccgtgacac cgatgaaatc
     7201 agcaatgtcg ctaatttgcg gcgagctttg taattctctc gtcagctctt ctacggcatt
     7261 tttaattttc ggacctaatt ctttgattcg gcgcggcaca tgcacactcc atgttttatc
     7321 acgtaaaaat cgtttaattt cgccaacaat ggttggtaca gcaaatgctt caaagctttt
     7381 cccaaacgtc gcatcatatc ttctaatagc tccaagtaag ccaatatttc caacttgaac
     7441 taaatcttca tgaaaagatt taccttggga atatttgcga gcaatagact ctactaggtt
     7501 tttgtaatga acaactaaat tatattgggc gtcttgatcg ccattttctt ggtaagcggc
     7561 aatccatata tagacttttt ctttcgcctc tttatcaggt tgagatactt ttggcattct
     7621 cctccacctg cttttcatta atatatttgg tcattacgac agaaacccct tcatcataat
     7681 aaagtttcac gtcatccatt aatgtttcaa ttaaaaataa acctagacct ccgatacgca
     7741 tcatctccgc atcttcccct acctcatatg ggccaatttc ttgtttacgg gtttctaagt
     7801 cgaagcttgt tccattatca gaaacacgaa cttctaattt gtcttcataa ataagatatt
     7861 ctactgtaat ctcaccatca tcttctcctt taaatgcgtg ctttacagaa ttagtgatgg
     7921 cttcacttac ggctattttc aaatcttcaa ttgcttcata agaaaatcct gcgcgacttg
     7981 caattcctga taatgaaagt ctacctaaac taacatattc aggcttggca ggaagttgta
     8041 atgtaatttt gtcatgcatt gttgccattc atttcaccct ctacattttt gatttcaatg
     8101 atatctgaca atcctgtgat ttcaaacaat cggaaaagtc ggtcgcttaa accaaacaag
     8161 acaagttcac tttggcgttg acgtaagctt ttaaacgctc ctacaaatac gcctaatccg
     8221 gtactatcca tataacttac ttctgttaaa tcgattcgaa gtactatacc ctcttttact
     8281 tgatatactt caagtgcttc ttttaccttt ggcgctgtat aagcatcgat ctccccagca
     8341 acaaatatgt ctatgtggtc agtatcacgt tcttttattt ctatactaat attcatcact
     8401 tcaccccatc taattttaag tatactgtcg attttaccct aactaataaa attaaaacat
     8461 tcaaaaataa aaacgctcca ctctttaaat acgtttactc accagtaaat gctctctaaa
     8521 gaatgaggta cgtcttcact tcttcttatt tagttcgctt aatacaaata agcgtaaagt
     8581 catcatgcaa ctcaaagttt tgcattttaa ctaattgatc ataaatcgca tgaaccattt
     8641 tttcagcaga taatgaaata tgcgctgcta taatttctgt taactcttca cgttcaagaa
     8701 aaccattggc tgttcttgtt tctgttacac catctgacat aataaatata gcgtccccca
     8761 cttcaatttt cttatcaaat tgacggtaga cagcattttt atctacaccc agtggtaaac
     8821 ctttggcgta taaatcagaa aagctgtttt ctttatgttg atagtagagg cccagctcat
     8881 gaccggctga accatattca aacaaatgtg tatcttcgtg ataaagcccg taaaacatcg
     8941 tgataaacat attgtcgtta atattttctt ctgctacttg gtttaatgat tcgagtacga
     9001 tagatggttt tctgtcgtcc ccagtcattc cagctagtgc gtattttatc atggaaatac
     9061 taaatgcggc tggaattcct ttaccaataa catcagcaag cgcgatacca atttgtttgt
     9121 caccttcttc tgtaaagcta tagtagtcac cgctcatttg tctagctgcg acgctaataa
     9181 ctccaaaatc aagttcatcg tgttccggta cctctgtttt cattaacgtt ttttgcatat
     9241 cttctgcttg agcgatttca ctacgtaatt ctttttgctc ggttcttaga ctaagatgct
     9301 ccatataagc taagccgtag cctaccatta tttctagtag tacatcaaat gataatcgta
     9361 caaaatccgg caactctttt ccgtatagtt caagaaccga gcgatgtaaa tggacaattt
     9421 cttctggtga tactcgctct tccatagctt ctctggataa tttttcgcaa gtataaagaa
     9481 tttcttcatc ttgatgttct aaatactgaa taagaatatc acggtatttt ccctcaaaag
     9541 ctttttccat ttttttctag ctctccttac cgaacccatt tcgttgttgt aattaccgtt
     9601 cctttagaat cgccttcaat actggattca atatcaaaac tgtccattaa acgtttgact
     9661 cctggaagcc ctgctccaag tccgcccgat gttgtataac catcttgcat tacttttctt
     9721 atgtctacaa tacctggacc tttgtctttg gcaacaataa tcatcccttg tttaccagat
     9781 tcatttactt tttcgataca gatttctcct cgtccagcat aaaggaaaat atttctagct
     9841 aattcactga tggcagttgt aattcttgct tggtcaacgg ttccaaagcc aatttctttg
     9901 gatatttttc tacctagttg cctagcagct acaatgtccc attcattaat tatctttaca
     9961 caggattgga atgtcatgtt cattccccca attcctgttt aagtttttcc agaccacttt
    10021 caaggtccat cgccgaaagt actccgctaa acgtaattcc gagttcaatt agtgtaatcg
    10081 caactgctgg ctgtatccca gttacaacca cttttgcacc cattagttta gacatactta
    10141 ctacatctcc aagaattttt gcaataaatg aatcaataaa atcgatggaa gttatatcaa
    10201 tgactactcc tctggccgac gtttcatgga tttttgcaag caaatcttcc tggaattcta
    10261 ccgcagtatg atcatctaat tcactctgga tagaaattaa taaacattca cctaacttta
    10321 agattggtat ccccacagta ttcacccctc tttttctact atctctctgt tcgtcaaggc
    10381 tagcgcacgc tccatgcctt ttttcattgt gttggtcgtg ataatttgat ctaattcaat
    10441 tcctaagtta acgattgttt gcgcgatttc tggtctaata cctacaagca tcgcctgaca
    10501 gccgacaagt ctaaccgctt cggacgcttg aataatatgg tgcgcaacca ttgtatcaac
    10561 aacaggaact cccgtaatat caatcaaaac cacttctgac cgatttttta caacacctat
    10621 taataaattt tctatgatta acttggctct ttccgtgtca atcgtcccaa ttaacggcat
    10681 tacagaaatt ttttcaaata ttggcaaaag tggtgccgat aattcctgta gtgcactttt
    10741 ttggatagaa actgtctttt cccacgtatc cgcgtaggct gtgaccactt tgttatacat
    10801 ggaggaaagc catgtttcaa agcgataata ggcatcatct tcaggttttt cttctctctt
    10861 taaaaataaa tcttcatctc tcattgctgt atatactaaa agcccaaaaa cacgtaggcc
    10921 agtggtaaca aaatgaatcg gccaacctag gtggaccact ttctctgcaa aatcatctag
    10981 tttttcgttg aacttagaac cgttttcggt aacattcgaa acaattaaat ccacaaattc
    11041 tttgctagtt tcttcgtaca ttgcttcttt tgcaatgtca ttgattagct gatctgattg
    11101 tttctccatt tcgttcatcc agtcattcag taagtctgct ttatttgtac ggatgaagtt
    11161 tgcaaaatct ttatacatca gttattttcc aacctttctc cactattaac aaaattttct
    11221 ctcttattgt gcggtttgct taactgcctt ttaaaaaaga cattagaaac aaatttagcg
    11281 agtatgttga tacgcgttgt ttgtaggttt ctgatgtcct tactgtttct tcagagcagt
    11341 taattatttc attatgtatt aaacttatta ttttacgtca gacccttttg tcctgcattc
    11401 atcattgtat gttatttttt aggatggatt aaaattctac tactcctaga ctgacttcaa
    11461 gtgccttgtt taccttggcc attaaatctt cgtccaaatg tgtaattttg tctgtcaggc
    11521 gctgtttgtc aatcgttcta atttgttcta aaagaatgac agaatctctc tcaaagccat
    11581 ctttacgagt agcttccacg tgtgttggca attttgcttt ttgaattttt gcagttattg
    11641 ctgccacgat cacagttgga ctgaatctat taccaatatc attttgaatg atgagaacag
    11701 gccgtattcc cccttgctcg cttccgacca cgggggaaag gtccgcgtag tatacgtcac
    11761 cacgcttcac catcagccat taacctccta aaatactaat attcctgtct tctgcttctg
    11821 cttcgacatg ggtacactcg catgcgatag cgaaattaat tgtcgccatt tctgcatagc
    11881 cgcgctccat ctcgtctctt aattcgcgag cccttttctc ttgtaaaaac tgttgcgttg
    11941 cttccattat aacttcactc cgccccattt tttctttttc tacaactacg tcgagttctt
    12001 gtatcatttc ctgtgtcagt tctacggata ttatcatccg cttttctttc tctaacacgt
    12061 gtcacacccc caaagcctcg tacctgtaag taacaactat atcgtaccat tatcacgcct
    12121 tgaagaaaag agttatttcg cattttattg ttaagaatat tacagttcta gctgatatac
    12181 tctcttaagt cctatatata gctataaagt ttcatatgtt agattataaa cgcttcttct
    12241 aaaaaaagca cgaatattac cttctaatgg atgtattttc taggtatacg ctcatttaac
    12301 agacaagtaa cctcataatt tattgtatct aaatagtgag cggcatcatc tgctgttatc
    12361 gtgtttccat ggtccgtgcc aattatcgtt acttttgaac cagtttgaaa ttcgcgcggt
    12421 agttttatga tggtttgatc catacaaacg cgtcctataa ttggggctag ttccccgtct
    12481 actaaaacat gaaatccgct gtaatgacga atcaacccat ctgcatagcc aatcggtaac
    12541 gttgcaaccc attctcgttc tgttgcagtg taggttgctc cgtagctaac actatcacct
    12601 ggtgcgagtt ctttcacatg aaccatttcg gtatagagtg caagggctgg tttaagctca
    12661 aatggtaagc tagttttgat ttcggtggaa ggggttaacc cgtacatcga tataccaaag
    12721 cgaatcgcat caaacccgat ttgtggctgt aataatgaag cagctgaatt ggctgtatga
    12781 acatacgttg ggcgattttt taaactcgtt aaaatggttt ggaacttagc taattgttgt
    12841 tcgaaataac tagtttcaag ttgatcagct gttgcaaaat gcgtgtagat accttctagt
    12901 tgtagttggt tgtctttagc aattgtcgtt tcgattcgcc ttgcttcgtc ggttgtacga
    12961 atcccaagac gccccatacc gctatctact tttaaatgaa tgcgaagtgg cgcttctaag
    13021 gttaggtcct ctagccagtc ctctctaaaa acagtgaggg aaatgtggtt tttggccgct
    13081 aaatttgcat cttcttttct agttgcgcca agtacaagaa taaagtcatc ttgaaaccca
    13141 gcttctctaa gagccaacgc ctcatctaaa atggcaacac agaaaccttt tgctccagct
    13201 tctttcgctg ttctagcaac ttcgataatt ccgtgaccat atgcattagc tttgactact
    13261 gcccataaat ccacattttc tggaagttta ttttgttcat tttttatatt ttcgcgaatt
    13321 gctgcgcggt ctatctcaat ccatgtagga cgatgccagc ctgtcaccat gattgttcac
    13381 tttcctttct aaatttcaat tatcacttga gctgcggctg atctagctgt gtgggtaatg
    13441 ctcacaaaaa cgttttcacc tgatttgact ggtaaagtaa catggggtcg cccatcttct
    13501 acttgcaaaa tttctacatc cgtaaaactt aaatgtttgc caaaaccagt tccattcgcc
    13561 ttagcatatg cttcttttgc tgcaaaacgc ccagctaaaa attcgatttt gcgattacct
    13621 tcgtattttt caaattgctt aatttctttt tctgttaaaa cacgttcgat aaagcgtgga
    13681 ttcttttcca cgacttgttt tacacgttct aaatcaatca tatctagtcc gattccttta
    13741 atcatgttac acctcttcca agtaatctac taattcctta gcggctgttt gagctcctgc
    13801 gatgcaatca ggaataccca caccttcgta gctcattcct gcaaaataaa cccctgggta
    13861 atctgctttg atgttctttt tcaattgttt tagtcggtcc tggtgattaa ctaagtattg
    13921 aggcattgcg gatttcattc ggcttacttc ataaaaaagt ggcgcggcgt gaaggtccat
    13981 catttccgca taatctctca aaacagctga aacgattgct tcatcacttg cttgctctaa
    14041 ccaagtttct cccgctttcc caacaaagcc tcgtagtaac attttatttt ctggtaccat
    14101 atgcggccat tttttctgca cccatgtaca agcagtggtt ttatatgggg cggttctggc
    14161 aactagatag cctgttccat ctggtaaaat cggtacatct tgttcattgt atgctaatga
    14221 gacagttgcg agagtcgtaa gcggttgtcc cgcgaatggt tctgtcgttt tttctgctaa
    14281 taaatgaatt agcgcatcat gtgtggcagc gataatgacg ccatctgcct ccattttatc
    14341 gccatctaca aaagaaattt cgtaagagct attctttttc gtaatgttcg ttgcttgttt
    14401 tgctgtatgc aaattttctt ttggaagtgc ggcggcaatg gcttttggta acgcatctag
    14461 cccgccttct aatgttcgaa aagcaccaat agtagctttt gtccctgtcg tttgcatgct
    14521 actttctttt aagccatcca tcaaattccc atatttttta actgcttgtt cgaattgtgg
    14581 aaaagtggcg cgtaaactca ttttgtatat atctccggca taaattcctg ataaaagtgg
    14641 ttcgataatt gttttgacta attctttacc gaatcgcgct tcaaagaatt cgccaagtgc
    14701 ttgatcttgt tcttgattat ttcgttccat tgttggttct tgaagtgcgc gagctttccc
    14761 aatttcggat acgagtgtac tagctagcaa tgcttcttta tctgttggaa ttcccatcac
    14821 tgagccttct ggaatcggat gaagtgcttt ttggtggtaa atgtaggatc ttcctgtcgc
    14881 gttcgcaatc agtttatctt cgagtcctaa atccttcact aagcctacac cagctggttt
    14941 tcttgctaaa aaggagtctg gtcctttttc aattaaaaat ccgtcccgtt taaccgtttc
    15001 aaatttcccg cctagttttt tgtctttttc tactaattcc cacgtataat tcggatgtgt
    15061 tttttgtagt tcatacgctg ctgcaagccc tgataagccg cctccgataa tgactatatg
    15121 tttcactact taaccaatcc tctctatcta ctctttcgtt tattctatct attttaccag
    15181 atttcagggt aattgaacaa aaaataaaag aacagccatt tccaaaatta cagtcgctat
    15241 tgatcagcga tttttaggaa atgacgtgtt cttttttaat ttattgtttt ggacgggctg
    15301 taccaattgt ataccttgat agctaagtct tgattgatat agcgaacata agcttcagcg
    15361 cttgtacttc ctgatttaag ccaaacattt aagtgccttg atccgccttt ttccatccaa
    15421 atgctttgtc ttaagcttaa accttgaatt cgctctttgc ggataatgtg cgttaacttg
    15481 gagaaaattg ggcgtgactg gacaaggagt gtgtgcttat ctgtgaaaac tccggttgcg
    15541 cggtagctgg ttaccccttt tatccctgct aaaactggca aaataatact aattaagccg
    15601 agtgggaaaa ataaaatact tgctactgcg gctgggataa ttgtccagat caagtaaatc
    15661 tgcaaaaatc tgcgcaaact ggcttttgga gcacgttcca ttttttctat ttcaaataaa
    15721 taatctggta gcatttcttt taatgttttt aaagccaacg cttttttcat aataggcaaa
    15781 agtaaaatgt caccggatag tttttcatca cccgagttcc ctgcagtagt aactttgacc
    15841 gctactaagc cgagcatttg tcgtagtggt gattcaataa tggtgattcc ttgaatacgc
    15901 gaaagtgaaa tggttgtatg gtttcgttct aatagtcctt tttctacaac aagtgaattg
    15961 ggatatttca tcaatttgaa ctggaaatac ttgaacaatg tcgtcacaat tgatattccc
    16021 cataatacca aaagaatcaa gacaattaat acaattagta cgataatgcc cattttccat
    16081 aactcttctg cttgagcttc catccagtct gtcgggatga cttctcggaa ttgttgcatg
    16141 aatgctagaa cgataaggag cgtcccgaaa acgccgccgg atgttactgc cattaaaata
    16201 agctgttttg tttgtagcat gaccgttttt tctggtgctt ctgccacttc tactgtggtt
    16261 tcctcggttt ctggcacggc ttcttggatg tctctctttt taccgtcgcg taaatcattt
    16321 aattcgtcta ctacgccaac tgggacagcg actaaatcgg cttctgtttt cccgttaccg
    16381 ccagctgttt cgattaaaat ttggcagaca ttaaatggga taaagaaaaa ccattgtttc
    16441 ttttggacgg tttggatgcg ctcgtaaggt atgtatgtat tttttcgaaa aatcaaaccg
    16501 tatttgatgc gaatcccttg gtcttcgagg gtgtatttgt aggttatgta ttttaagact
    16561 gcgggggtta aaatgagtaa tataacgatg acaataatta aatatacagc ccagtccggc
    16621 aaataaccgt tactattaat ggcgcggaaa acggaaaata aaccgacgac gataggaaca
    16681 atattgcgtc ttacgttcgt aataatttct ttaatgaggg caatcggatg gaggcgtctt
    16741 tcttcaaaca tcttctttcg ccaccttcac aagttcaaga atatgatgtc taagttcatc
    16801 tgattcagac tcgtttaccg cttcaatctt atgtgttttt gcagcagttg taatcgataa
    16861 agaaacgagt ttttgtcttc taagtagcgg accttgctcc gtttccacgt gttgaatgcg
    16921 aatcatcgga attaagacac gacttctaaa aataatgccg tgctgaattt ccatttcgtc
    16981 tggtttaatc tggtagctcc aacgtgcaaa acgaaacgga ataatgaata agtaaataaa
    17041 ggcagcataa agtaccgtta atccaaaacc gatcgcactc caccacaccg aagctcctgc
    17101 ataatacaaa atgattgccg ctacaaccga acaaagtaga aaagtaagaa cagcaattcc
    17161 ctccgtttgc cgccaaactg ttttaatttt ctccggtaat ttcttttcta aattatcaag
    17221 ttccattgct ctactccttt tttcttttat cttacgttaa aaacagctaa attggtagcg
    17281 attttttaaa tctatcatgt tttattcata gtttgttcat atttcttttt tataatataa
    17341 caagaagagg tgagaaggat gaagaaaaaa ggttatattc tattaataat agcgctttta
    17401 tcactaacgt taaactggct tccggagatt gcccacgcgc aaaaagaagc aacaggaact
    17461 acttatacaa ctgcaaccac aaacgaatta atggatatgt ttctacctta ctccatccaa
    17521 aatccttata ttgaaacgac aaaaaatagc gcggaattaa tgtttgtaac agaggaagcc
    17581 gccacgatta ccaccgaaac aaataatcaa acgcaatcaa ttgctggtag caccgaaaac
    17641 catcaatttg cattagctaa tttgcaacct ggaaataatt tagtgacaat cacagcgaca
    17701 atgacagatg ggactagtga gagcaaaaca atcaccataa accttccaga gaaaccaaag
    17761 aaaaactcta aatcgtttca tgatcattct aaaaaccaac aagtgacgca tcgaaaaaaa
    17821 gggcacttat tataataaaa aaggaagcac tcattcataa gaagagtgct tcctttttcg
    17881 ttaatttcta cgtccaaatg taaaaccaag tgctactaaa cttacccctg ttacaaatgg
    17941 gataaacggg ttcgaatccc cagtatgagg taaaacccct gttgctttta cgacaccgtc
    18001 tacgcttgtt gtgctagtca ctttttgcac aggtggaatg gtgattttgg ataagagtgt
    18061 tttttcaatc gttagttgta atttttgacc ggcttgtaaa gtatccgatg tgagattgtt
    18121 ccagtcttta atttctgcaa cagagacatc aaacttatta gctactccag gtaatgtatc
    18181 gccatctttc actttataga tgactttaat tttaccattt tgttcggaat ctttaacgat
    18241 ttcaagtgga ccaaaatctg tttcgactgt tttttcaatc ggttgctttt cagccggaat
    18301 aaatggtggt tcttctttaa ccggtggcgc tggcggggtt cctgttcctt gtccaccgct
    18361 accgtaatca ttcactgtcg catttctcga aacagcctct aggttatcac cggatagcgt
    18421 tgctttattc gtatagcttt tttgtttcgt cgtaattttc gtatcataag taatgacaac
    18481 agattgatta tttaacgttc caatagataa ttcaaaattg cgatctgcat ccagcgtaat
    18541 tggctggata ttggtagtta tcactttttt gttggcatcg cggtatttga ttgttgcact
    18601 tccaagcaga ttttgccctg agccaagcgt atccgtgtaa acggaattat caataggtgt
    18661 caacgcatta tttaaagtaa cagtccaatg taaaatactc aagtctttat catccattcg
    18721 cccttgttta aaaacgattg ttggtgagcc cgtaccgcca ccagtattaa ctttgctaat
    18781 aaaggcgttt atcgtttggg tcgaattttt caccggaaat gcgattggat ttacttgatc
    18841 tgtttgaata tttttgctgt taaaagttgc gttataaaag aggctgccac ttaaatctgt
    18901 atgtgtattt acatagtcgg taaaagttaa tgtaatggtt cccgttgctt gatcaacggt
    18961 tgcatttgcg atcgtgtttc cttgcgaatc cataagaggg aatccgccat aattaattaa
    19021 ttttagctga ttaggaatag taagcgtcat tgtttctccg cttgcaactg gctgtgtaat
    19081 aacgaaatca tacgccactc gcactttact attttcctta aaattcgttg tttgctcccc
    19141 gttttgattt tgtaatgata cattagtaaa aaaactgctg ccgtaatctg ttgcagcttc
    19201 tgcttttggg cttaaaaatc cagtgataat taaacatata attgcaaata ctaaccatct
    19261 ttttttcatt ttgtttcatt cccccttaaa acatctatct ttatagttcc cacaacttgc
    19321 ttgttaaaaa ccgtacaatg attttgcgca caaaaaaacg ccagaacaag tctgacgttt
    19381 ttctttttat agctgcaata aatattggta actggcttct agtgtttcga acatagctcg
    19441 tttggatcta tcttgctcaa tgcaatagta ctcgactccg tttgcttcgc cccattcaat
    19501 aatagcgcga aaatccactt caccttgccc tatttcgact aaattattat ccatatcttc
    19561 tagttcaaaa ccgctcacaa aatctttcat atgcacaatc ggcgcgcggc cgctgtagcg
    19621 tttaataaat tctgtttcat catgtccagc tgcgcgaatc cagtaagtat caggttcagc
    19681 ataaatacaa ataccgtcaa ctgggtcggt aatataatcc atcactctgc gaccatgaat
    19741 gcattcattg aaatcgtatt ccggattatg aagaccaatg cgaaaaccta gtggatgtag
    19801 tttttccgcc gcattaatta acgccgcttt tgttgccgtg tagcccgctg tcgtttggtc
    19861 ctcttcttca atatatttgt caaaaacagt tttacaatca aagaaataag cttcttcaat
    19921 gatgccatcc aaatcattca taaaacgatc atgcttgatg tgcatgccga tcacttttaa
    19981 ctcatatttt tgcagtaaac gacgtacctc gcttggatca ttgccacgca taccatcaag
    20041 ttgcacatat cgaaagccga tttcatgcat tttccggagc gtaccttcta aatcgcgctc
    20101 catttctttt cgtacagaat aaagttggac tgctattttt tcttttatat tcattgtttc
    20161 tccgcctttc cttatgcctt taaatccagc caatcaacct cagacgctgt taatttaatc
    20221 ccggccgctg caacggaaga ttgaagttcc gtagcatttt ccggaccgat gacagcggct
    20281 gtcgggaatg attgcgttaa tacataagca agcgaaattt ggattggagt gcaacctttt
    20341 tggttagcta gttgcttggc acgactgtat ctttcccagt ttgcctcact ataataaact
    20401 tcgaccattt ccgtatcgcg cgtgtcttcc tcagaaaatc taccagagaa aaatccgcct
    20461 gcttgtgatg accaagaaaa tagtggcaaa ttcgtcgcct catgccagcg aatcatctct
    20521 tcactcgccg aaacacaatt ttcccagcgt ggtcgattca cttttgccaa actaaaatta
    20581 gggctgttaa agcttagtgg cgtcaatcca tggctcactg catattcatt cgcttcgata
    20641 atacgcggga gctcccagtt tgaaagtccg atagcataaa cgcggccatc ttccacttct
    20701 ttatgcatcg cctccataat aggacccact tctacatctg gattgtcgcg atgaagtgcg
    20761 aataattcaa catgatctgt ttgtagcgta tctaaactaa ccgaaatatc ttcgtgaatt
    20821 gcttccggag taacccgcgg cacgtcgctt gcttcccgaa ctggatgccc gcctttcgtt
    20881 tggataatga cactatcacg atttcctctc atattcatcc acgcgccaat cgctttttca
    20941 ctatggcgat aatggcgcgc cgtatcaaaa atatttccac ccatttcaaa atattgatct
    21001 agtactggac ccgcaaaatc catattatct gcacgtaaga aatctcctgc acccatcact
    21061 aaattagagc aagctatctc gattttttgt ccattttttc tgccgttaac gataattttt
    21121 tccattatgc ttccacccca ctcgcggcaa ttttatcgac tacaagtgtt gtattcgaat
    21181 cttttacgag tgttgcagga atcgctactg tcggttcttt ttccactact tgtttcacga
    21241 tatcaatttt tttctcgcca gttgctacta aatatatttc tttcgccgct aaaatttgtt
    21301 gcataccaag agaaattccg tgtgttagtg gcaaatctgt atcaaaatat ttgctcatga
    21361 cgcgtttcgt tacatcatca agttccacga catgacagtt cacatctact ggcacaaatg
    21421 gctcgttgaa gccaatatgc ccattaagtc caatccccag caaaataaaa tccattccgc
    21481 cacggtcgtc gataaacttg tctacacgag cgcattcatc cgttaagctc gttgctttcc
    21541 catcgaaaaa gcaaatttgt tcactagaaa catttttcaa acggtcgaaa aatgcatcat
    21601 agagtgtttg gatacagcta ccttttgttt cgcgtccaag gccaacccat tcatccaaac
    21661 caacaaattg cgtctcacta aaatctactt cgcccgtttg attcgcttta ataatcgctt
    21721 ctattgttag taaaggcgtg tccccaccag cgatacaaat taaacttgca ggtttttctt
    21781 ttaccaattc aatgattctt tggctcactg tttgcgccac gagttgttca ttttcattaa
    21841 taattaattt cattttaaaa tcaacctttc ttattagaaa tccaagtcta gtgcatcgtg
    21901 cgcagcttgg cgttctgata caacttcttc ttctttaatc aagctcttct catacatttt
    21961 gaagaacgga tagtacatac aaacggctgc tgcgagaacg aagatgatta aaataatcgc
    22021 gcgccaatcc atcgtcgcca aatactgcgc gagtggaatc ggtgtaccgc caacattcgc
    22081 aatcggcgga cgaacccaac caaagtggaa cacaaaccat tgccctactg ctaaaattgg
    22141 cgtcccaagt acgaatggaa taaataaata cggattaaaa cagattggca aaccgaatac
    22201 aactggttca gaaattgtga aaatcgctgg aacaaccgac acttttccga ccgcttttaa
    22261 ttctcttgat ttactaaata gcgcaaggat aactaatgca cctgtaatac cagaaccaga
    22321 gaagcccatg aagtaatccc agaagtttgg cgcaaatacg tgcggaattg gttctcctgc
    22381 cgcatatgca gccgcgttcg ctcctaaata ttgtgtcata aatggaagca caaaaccaat
    22441 caaaatcgca taaccattta ggccgataaa ccagaatagc atttcaagga aacaaataag
    22501 gaaaaccgca taaggcgtat caatactatt aatcgccgga gctagcatcg tcgtaaaggc
    22561 ttccggaatg atttgaccgc tagtgacact ttgcattaaa a
//
LOCUS       DABQVC010000022        22324 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.022,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000022 DABQVC010000000
VERSION     DABQVC010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 22324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22324
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.022"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            23..1099
                     /locus_tag="IBJ56_000586"
     CDS             23..1099
                     /locus_tag="IBJ56_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416868.1"
                     /translation="MKKAIMAATIFVLLLATLSGCSSPKSDFTAALQKTAENRQYTTN
                     VTFQVNNLSESYIKKLGPEIDLNQLKKSNIQYKISVDSDSASSYSASSIHWKGKKPLD
                     LTIHALQNSDDGKAYIPVSDFYDASDSISSLLPDSAARIFNQVLDQNKDLESKYLNLF
                     ETIQNFSNQTIDTETVDRQAKVLKKMEETAGIAIYSYLNDLDDQHFTSKDNGDIVLKL
                     SKNEISDLVNSVITKLDDNGSVVALIGEIDGSTQKAAKKKWNNAQKSIQSSLKALTEN
                     KAQTLDFKLTLTPDSKKGFSKAIITTNFEDTKTKDLMDFTTTIDMLDYEKVPPMPEGK
                     EIVSKKELDKAISDGLKLYLSSAQ"
     gene            complement(1141..1971)
                     /locus_tag="IBJ56_000587"
     CDS             complement(1141..1971)
                     /locus_tag="IBJ56_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HAM3416869.1"
                     /translation="MKKVLGFIFTLSLVLVLTACGGSSDKASSSKDDNQLVVGASNTP
                     HAQILEQAKPILKDKGIDLKIVKYTDYVMPNKALEEGDLDANYFQHKPYLELEEKEKG
                     YKFADVGAIHIEPMGIYSKKVKDIKDLKDGAQVLLSNSKSDWPRVIGIFVDNGLLTLK
                     DGVKPQDATFDDIKDNPKNLKFKYDFDPAYLMTAYNNEEGDVVAINSNFVVDQGLNPS
                     KDAIAIESKDSPYANIVVTTEKKKDDKNIKELVKVLHSKEIQDYITKEWDGAVVPVDK
                     "
     gene            complement(2036..2710)
                     /locus_tag="IBJ56_000588"
     CDS             complement(2036..2710)
                     /locus_tag="IBJ56_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3416870.1"
                     /translation="MTKLQELFPNVDFQMMWVATQETLYMTLVSLFAVFLLGIVLGLL
                     LFLTNNKKHAGARILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGTVIGPKAALPA
                     LIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVT
                     AISLVGFTAMAGVIGAGGLGNTAYLEGFQRGQPDVTVLATIIILIIVFIFQFIGDFLT
                     KRTDKR"
     gene            complement(2707..3729)
                     /locus_tag="IBJ56_000589"
     CDS             complement(2707..3729)
                     /locus_tag="IBJ56_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HAM3416871.1"
                     /translation="MITLQNVVKEYTSRNNKVLAVDHVDLEIEQGEIFGVVGYSGAGK
                     STLIRMFNGLELPSAGTVEVDNLLISQIRGSKLRKARQQIGMIFQHFNLLWSRTVAEN
                     IAFPLEIAGVRGEKRRFRVNELIRLVGLEGKENAYPSELSGGQKQRVGIARALANNPK
                     VLLCDEATSALDPQTTDEVLELLLDINKRLHLTIIVITHEMHVIRKICNRVAVMENGK
                     VVELGDVLDVFRHPQEKVTQRFVRQVTDSDETEELIHLLLDNYAEGKIVKLLFMSENA
                     TQPVISQVAKENDVMLNVLHGNLTQTQNGAYGTLYVQVLGTEDAINASLTQLRQLKVE
                     TEVLER"
     regulatory      complement(3819..3937)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            complement(4046..4234)
                     /locus_tag="IBJ56_000590"
     CDS             complement(4046..4234)
                     /locus_tag="IBJ56_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416872.1"
                     /translation="MKKHIVLIVVACITVIAVFMYIVQINNSELKYQNRAQIKIASQM
                     ASQNEQTDNSIISEITYK"
     gene            complement(4313..5455)
                     /locus_tag="IBJ56_000591"
     CDS             complement(4313..5455)
                     /locus_tag="IBJ56_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HAM3416873.1"
                     /translation="MKSKLELLFTKISHVMNVWQATFFAAVSWILALITIQTIYLWSI
                     SIRDDSLFLREVSQAIVQLFGTNKYTRIMQSFWMMSLKFLIIFLIACLFFAFFYRLMR
                     QRILKKQLRTINFALNDGKPVDTESFVPEIQELERNIENMRERQKKLMQQEEQAQQAR
                     NDLITNVSHDLRTPLTSILGYLSYIHEDRYRDEIELRYYTELVYGKARHLHKLIDDLF
                     SYTRLDSVDYQLKKDELDIIELLRQLVAEYDGRAAERNMQIVEHFDANKLIIGGDGNQ
                     IMRLFENLFSNALRYGEGNKQIDVSAKKEDNMAVVRVTNYGEEIPNVDLPYLFERFYK
                     VDKNRTTTGTGLGLAIAKSIVEKHGGIVTAESKKRQTSFIVKLPLI"
     gene            complement(5445..6140)
                     /locus_tag="IBJ56_000592"
     CDS             complement(5445..6140)
                     /locus_tag="IBJ56_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3416874.1"
                     /translation="MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQE
                     KQPTLVILDIMMPEMNGLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMV
                     KPFNPLELSVRVKAILRRMQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTT
                     SEFDILFLLASEPGRVFSSEYIFEKIWQEKALGASKTVMVHISNLRDKLREAMGGENV
                     IKTIWGVGYKIEI"
     gene            complement(6215..7090)
                     /locus_tag="IBJ56_000593"
     CDS             complement(6215..7090)
                     /locus_tag="IBJ56_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HAM3416875.1"
                     /translation="MNHSNLTILSVCSNFVIVVLKLIVGFFTGSVAVISEGIHSSMDL
                     FASIITFFSIRISNQPADEDHPYGHGKAENIAGTIETLLIFVAGIWIIVESVNKLVNP
                     HEIRFPALGIMVMLFGAIVNIIVSRIIKKAADEANSVAMKSNALHLYTDVFTSLGIAL
                     SLFLVYITGWLWLDPVIAILTAFYIMYEAYKLLKESFPPLMDKRLSADEEEAIKQIIL
                     AHKARFIEFHDFRSRRAGAEEYIDFHLVVSSSMTIESAHSLCDEIEAEIMNFYAKAEV
                     LIHLEPEEERVLTRI"
     gene            complement(7282..7566)
                     /locus_tag="IBJ56_000594"
     CDS             complement(7282..7566)
                     /locus_tag="IBJ56_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HAM3416876.1"
                     /translation="MRTAQKNGEDFVVFFFTPMCGSCQIASRLVDVVLESDEVHTEVV
                     KVDLNYVPDIAQNLEITSVPALVKFRNGQPADLSYQLHDATAIFEFLYSE"
     gene            complement(7651..8028)
                     /gene="gcvH"
                     /locus_tag="IBJ56_000595"
     CDS             complement(7651..8028)
                     /gene="gcvH"
                     /locus_tag="IBJ56_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HAM3416877.1"
                     /translation="MSLPKDLLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELP
                     EVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILK
                     LEEVEEADVKALLSSDDYEKVLD"
     gene            complement(8069..8422)
                     /locus_tag="IBJ56_000596"
     CDS             complement(8069..8422)
                     /locus_tag="IBJ56_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HAM3416878.1"
                     /translation="MINFYWYPKCSTCKKAKAWLENEHVDFNEVDIKTETPTAEEIQK
                     WHEVSGLPIRRFFNTSGIKYRELGLKDKLDTLSPEEAYKLLASDGMLIKRPLTTNGKE
                     VTLGFKEEEFEATWK"
     gene            complement(8579..9754)
                     /gene="rodA"
                     /locus_tag="IBJ56_000597"
     CDS             complement(8579..9754)
                     /gene="rodA"
                     /locus_tag="IBJ56_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HAM3416879.1"
                     /translation="MNQQNKLAGRIDYGIVLSMMLLMIISLVSIYSAQLTNNQYDANF
                     VVKQAMWFVVSTFAIIVVMQLDYDRLTKWAYYFYGLGLFLLVFVLLFGKEVKGAKSWI
                     VIPFLGNIQPSEVVKVILIVVLAKVIWDHNRTYKVHRFSYDAWLLLKIGLFTLMPLIL
                     IMLQPDLGTALVFIAIMSGMILISGITWKIIVPLFGSIAAIGTALIWMVIYHQNWLTS
                     LGFKPYQFERITTWINPENDPQGGGYQVLRAMTAIGSGQISGNGAGYDAIAIPENHND
                     FIFTIVAGDYGFIGASILLAIYFLLIYQIIRVAPDVGVPFYSYICTGVVMMLMFHVLE
                     NVGMNIGLLPITGIPLPFISYGGSALLGNMMAVGLVLGIRFNFKKSMFEVKEENHAS"
     gene            complement(9830..10999)
                     /gene="rodA"
                     /locus_tag="IBJ56_000598"
     CDS             complement(9830..10999)
                     /gene="rodA"
                     /locus_tag="IBJ56_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HAM3416880.1"
                     /translation="MARNRKKAVRIDYSIIFLMMLLCIIGLVAIYVAGLVNDQYTNNF
                     LLQQSIWIVISTGVVVVIVLFFDYDKLQWAAYYLYGIGNLLLVLVLIVGDERKGSKSW
                     ISIGSLGSLQPSELMKSFLILALAKVIWDHNKKYKLHTVSLDMQLLLKIGIVSILPLG
                     LVALQPDLGTILVFIAIIIGMVFISGVTWKILLPVFSSIALIGGTLIYLVMYNQEFLQ
                     KLGFKPYQFKRITSWLRPEEDPLGDGMQLLRSMQAIGSGQLQGNGIGNQAIAIPENHN
                     DFIFSIIGGNFGFIGGCVLIMLYFLLIYQIIRVALDINIPFYSYICTGVCSMILFHVL
                     ENIGMTIGLLPITGIPLLFVSYGGSSLLGAFMALGLVLSARYNAPEVNLGKENRF"
     gene            complement(11141..11932)
                     /locus_tag="IBJ56_000599"
     CDS             complement(11141..11932)
                     /locus_tag="IBJ56_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3416881.1"
                     /translation="MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKS
                     TMLRLMMRLLTPDSGEIFLNDKNITEIPSKDLAKKMTMLSQAPEGLVDVMVHDLVAYG
                     RLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTP
                     ILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDHVFVCENGQ
                     LVKDGSPTEVFTTELLREVFHITADITEKDGKQHIHPLASTRFEY"
     gene            complement(11929..12939)
                     /locus_tag="IBJ56_000600"
     CDS             complement(11929..12939)
                     /locus_tag="IBJ56_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HAM3416882.1"
                     /translation="MTTVKAHDPRRKRRRITFIVVIILLILAFFYGLTTGSVKITYSD
                     AWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGV
                     SAGGGFVAILMTLAFPALASFVPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGVAI
                     NAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRS
                     SNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLII
                     GNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQRGRV
                     AS"
     gene            complement(12939..13910)
                     /locus_tag="IBJ56_000601"
     CDS             complement(12939..13910)
                     /locus_tag="IBJ56_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAM3416883.1"
                     /translation="MKKITILTLSITAALLLASCGNDTATDTNNETTKTENKSQAALT
                     ITDMAGRDVSFDKKPERIIALTNADMNIIYALGGTVVGRQTTDASGVPDGAKKATEVG
                     NTHDLNLEKIASLGADAIVASSEQNLKDVPAMEGVGPKVVLTGANSIDEIKKQTAVLG
                     ELLGKETKAKELEANIDQKVAEVKKKQQGKKVRSLLVLGAPGSNYAALPSSLSGNVLE
                     IAGGENVAKDFKGVENFPQYASMNVEKIVAADPEVIFLMIHGGDEKETEAAFKKEMKQ
                     NEAWNSTSAVKNDHIVVLPAELFGTNPGIKIDQALDYMTDEINKVDN"
     gene            14066..14230
                     /locus_tag="IBJ56_000602"
     CDS             14066..14230
                     /locus_tag="IBJ56_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416884.1"
                     /translation="MTDNLFPNLAHENCKETMPPVTTEQFKEAAILEKNRKIEEILNI
                     VDKKKPSIKK"
     gene            14363..15121
                     /locus_tag="IBJ56_000603"
     CDS             14363..15121
                     /locus_tag="IBJ56_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HAM3416885.1"
                     /translation="MAILELNFKSVCLAMQTSVTVILPETDALYHGSIPKYKTLYILH
                     GLSNNHTTYVRNTNIERYATEKGLAVVMPAADHSFYSNMVHGRDFFEFVSTELPHVMK
                     NWFPLSDKKEDTFIAGHSMGGYGAFKVALTFPEKFQAAASMSGVMDINYIIKEDCFEN
                     FSTRAITGEMASQTGTENDLFHLLETNLQNQVPLPALFQNCGTEDFLYEDNLRFRDFA
                     LEKNAPLEYREGPGDHDWDFWDKSIKEIIDWLPL"
     gene            complement(15161..16564)
                     /locus_tag="IBJ56_000604"
     CDS             complement(15161..16564)
                     /locus_tag="IBJ56_000604"
                     /EC_number="4.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HAM3416886.1"
                     /translation="MLYSEDDKRKQESYRIPLFGSEEESTSIPKYVLKKEPMEPRIAY
                     QLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCV
                     NILADLWNAPKDMSYLGTSTVGSSEACMLGGLAMKFRWRNHAEKRGLDIQAKRPNLII
                     SSGYQVCWEKFCVYWDVDMRVVPMDKEHLSIDVDKVFDLVDEYTIGIVGILGITYTGK
                     FDDIQLLDEKVEAYNEANEHQLVIHVDGASGAMFTPFVNPELPWDFRLKNVVSINTSG
                     HKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFL
                     RYGFEGYREIHEKTKKTALYLAKSVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLY
                     DLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAVDFEDALHNLEHA
                     RVLYHDKERNDSYGFTH"
     gene            16691..16999
                     /locus_tag="IBJ56_000605"
     CDS             16691..16999
                     /locus_tag="IBJ56_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416887.1"
                     /translation="MFDLIFPLLLIILGVIYRVNPPKNKESRFSYRTKASLKNEISWQ
                     KAHQSLGIYWIVIGVSLLVLSLVLAFIPMHAFIRSSILLTTSIFAVLLSVILVEKKLQ
                     "
     gene            complement(17062..17916)
                     /locus_tag="IBJ56_000606"
     CDS             complement(17062..17916)
                     /locus_tag="IBJ56_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HAM3416888.1"
                     /translation="MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKI
                     EKTFVMETHELSEKLSELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHIN
                     FAVSRYNQGINLKNALLWEIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHI
                     VNARQDGQQMHMTVAMTQIVQDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLR
                     KEIVDSGDDFLYEQVQIKYPEAFKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTE
                     RNTIIKEE"
     gene            18184..18594
                     /locus_tag="IBJ56_000607"
     CDS             18184..18594
                     /locus_tag="IBJ56_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAM3416889.1"
                     /translation="MATRSEQIFINLPVKDLQATVAFFTELGYEFNPQFTDENATQML
                     IGDNIFAMLLKEDFFQTFHKEGIADTTKAREVLITITQDSRQAVDTLVDHALKIGAKP
                     AGETQDYDFMYSRSFLDLDNHLWEIAYLDESALQ"
     gene            complement(18617..19129)
                     /locus_tag="IBJ56_000608"
     CDS             complement(18617..19129)
                     /locus_tag="IBJ56_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClbS/DfsB family four-helix bundle protein"
                     /protein_id="HAM3416890.1"
                     /translation="MVRPKNKVELLQQSTEKYQQLNDLINSIPKEKQQLTFPFEDRDK
                     NIRDVVIHLHEWHKMALDWYEVGMGGKKPLMPAEGYTWKTTPELNLVIWQKYQETDLA
                     QARELLDETHNKEMVLIAGHSEEELFTKKYYKWTNTTSLGAIFISSTSSHYDWAIKKI
                     RKFKKAAGIK"
     gene            19253..19594
                     /locus_tag="IBJ56_000609"
     CDS             19253..19594
                     /locus_tag="IBJ56_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HAM3416891.1"
                     /translation="MKKIVILIISLLLLVGIGFGVYYFKNANHIGADVSYVKITTDGE
                     KGKNVSFNYSYTMPAYDEAGKETEVTFSADKNLRKGAYLKLYIKEDKGVTSYEEVPEK
                     EVPSKAAEKLK"
     gene            complement(19627..20010)
                     /locus_tag="IBJ56_000610"
     CDS             complement(19627..20010)
                     /locus_tag="IBJ56_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAM3416892.1"
                     /translation="MILQENIEIFGKKIRVNNDNFSPIAELWGDVMVDKPAGDIFAVY
                     SNYASDYKGDYDLLVGTKDWDEEKSVLIKAGDYLVFSVDNASHKGVEETWQKIWARDS
                     ELKRAYKTDFEWYHTSGEIDIYISI"
     gene            complement(20066..20962)
                     /locus_tag="IBJ56_000611"
     CDS             complement(20066..20962)
                     /locus_tag="IBJ56_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HAM3416893.1"
                     /translation="MKLERILAILVMILERKVLASELAEKFEVSTRTIYRDMDTLLYA
                     GFPVVALPGKNGGFTMLDTYKLATFTFSEAEKQILLEALEARSEFMLNDSHEILREKI
                     TLLQTEKPTSKHIFFDSATQHRQQIEAEVKRKIAYIQKAFTTNKQLKITYIAMSGAET
                     TREISPQKLNLMDGSWYLEAYCHKRAAIRHFKLTRITSLKEIGKSIMYVEETEHQPAE
                     MKKIVLEFPKNQLGKLLDYFLQEEMETGDDYVRVSFFYDLERNIIPFLLMFGSAVKIL
                     EPASLQKDYKSEVEKLYFNLNC"
     gene            complement(21007..21576)
                     /locus_tag="IBJ56_000612"
     CDS             complement(21007..21576)
                     /locus_tag="IBJ56_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HAM3416894.1"
                     /translation="MRSLRKIVIILIIIGFMYLLIVAAFMFSGSRTKPSENADTVLIL
                     GAKVNGTPAVPSLVLQERLDAAVAYLNEYPKAKVIVSGGQGADESATEASVMEEYLVN
                     EGIARKRIETETKSKRTEENIKYSNAKFNLGKTVIVTSDYHMYRALMLAKRQGIDASG
                     LPATSKTFAKYKGMMREVLSITYAWVFDH"
     gene            complement(21752..22171)
                     /locus_tag="IBJ56_000613"
     CDS             complement(21752..22171)
                     /locus_tag="IBJ56_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416895.1"
                     /translation="MYRLLSIAFFLIAVICLLFPWMASGIDAATFELVYEPAYKLIWM
                     QPIIIVGYLGFLCTIFIPKFQRGKNRIVPSIGILILVIGLLNLAVRPLFGFDSFTFSI
                     IATYVSELVEPAFLIAVSASILSLIMYAIYLKKPENL"
BASE COUNT         6952 a         4857 c         3552 g         6963 t
ORIGIN      
        1 ttattgaagg agaatttaaa atatgaagaa agcaataatg gctgcgacca tctttgtatt
       61 gcttttagcc acgttatccg ggtgtagctc ccctaaatct gacttcactg ccgccttgca
      121 aaaaacagct gaaaaccgac aatatacaac aaatgtgaca ttccaagtaa ataacctctc
      181 agaaagttac ataaaaaaac ttggtcctga aatcgactta aatcaactta aaaaatcgaa
      241 catccaatat aaaatttctg ttgatagtga ttccgcatct tcctacagcg catcttctat
      301 tcactggaaa ggaaaaaaac cacttgattt aacaatacat gcacttcaaa acagcgatga
      361 cggaaaagct tatattcctg tatctgattt ctacgacgct tctgatagca tctccagttt
      421 attaccggat tcagcagcta gaattttcaa ccaggtacta gatcaaaaca aagacttgga
      481 gtcgaagtat ttaaacctat tcgaaacaat tcaaaatttt tccaatcaaa caattgatac
      541 agaaactgta gaccgccaag caaaagtatt gaaaaaaatg gaagaaactg ccggcattgc
      601 gatttatagt tatctaaacg acctagatga ccaacacttc acttcaaaag ataatggtga
      661 catcgtccta aaattatcta aaaacgagat tagcgattta gttaattccg ttatcaccaa
      721 acttgatgat aacggaagtg ttgtagcact tattggagaa attgacggta gcactcaaaa
      781 agcagcaaag aaaaaatgga acaatgctca aaaaagtatc caatcatcct taaaagctct
      841 aacagaaaac aaagcacaaa cattagattt caaattaaca ttaactcctg acagcaaaaa
      901 aggatttagt aaagcgatta tcactactaa ttttgaagat accaaaacaa aagacttaat
      961 ggacttcaca acaacgattg atatgctaga ctacgaaaaa gttcctccaa tgccagaagg
     1021 aaaagaaatt gtatccaaaa aagaattgga taaagccatt tccgatggac tgaaattata
     1081 tttaagtagc gctcaataaa aaaatccttt taccgaaacg gtaaaaggat tttttctatt
     1141 ttatttatcc actggaacaa cagcgccgtc ccattctttc gtaatgtaat cttgaatttc
     1201 ttttgaatga agtactttta ctagctcttt aatgttttta tcatcttttt tcttttctgt
     1261 tgttacaacg atattcgcat aaggagagtc tttactttcg attgcaatag cgtctttaga
     1321 agggtttaag ccttgatcta caacaaagtt agagttaatc gctacaacgt cgccttcttc
     1381 gttattgtag gcagtcatca agtaagctgg atcaaaatcg tatttgaatt tcaagttttt
     1441 cggattgtct ttaatatcat caaaagttgc atcctgtggt ttcacgccat ctttcagcgt
     1501 taatagtccg ttatccacaa aaataccaat aacacgcggc caatcagatt ttgagttaga
     1561 aagtaaaact tgcgcgccgt cttttagatc tttaatgtct ttaacttttt tagagtagat
     1621 acccattggt tcgatgtgaa tcgcgccaac atcagcaaat ttgtagcctt tttctttttc
     1681 ttctagttca agatatggtt tatgttggaa gtagttagca tctaaatcgc cttcttctag
     1741 cgctttgtta ggcataacgt aatctgtata tttaacaatt ttcaagtcaa tccctttatc
     1801 ttttaaaatt ggttttgctt gttctaagat ttgggcatgt ggtgtattgg acgcacccac
     1861 taccaattgg ttatcgtctt tactagatga agctttatct gaggagccac cgcaagctgt
     1921 aagtactaaa actaaactta atgtgaaaat gaaaccaaga acctttttca tgaaattctc
     1981 tccttttttg cggggattcc gcgttttttt atataaattt cttcatatac attggttagc
     2041 gtttgtcggt tcgttttgtt aagaagtcgc cgataaactg gaaaataaag acgataatta
     2101 agataataat tgtcgcaagt actgttacat caggttgtcc acgttggaac ccttcaagat
     2161 aggcagtatt cccaagaccg cctgcgccaa tgacaccagc catcgcggta aaaccaacga
     2221 gcgaaattgc tgtcactgtg ataccggaaa taatcgctgg taaggcttct gggatgagca
     2281 ctttaccaat aatggtaaac atgttcgcgc ccatagattt ggctgcttcg ataactcctt
     2341 tgtccacttc acgaaaggca atttctacca tccgaccata aaacggagca gcagagataa
     2401 tcaaagctgg aagtgccgct ttcggcccaa ttacagttcc gacaagcgat tttgtcatcg
     2461 gtaatagtaa tacaattaaa ataataaaag gaatcgagcg gaacacattg actaaaatgg
     2521 ctgtaatcca gtaaagaatg cgcgctccgg catgtttttt attgttagtt aaaaatagta
     2581 ataatcctaa cacaatcccg agtaaaaaaa ccgcaaataa tgaaacaagc gtcatgtata
     2641 atgtttcttg tgttgcgacc cacatcattt gaaaatcaac atttggaaat aattcttgta
     2701 atttcgtcat cgttctaaca cttccgtttc tactttaagt tgacgtagct gtgttagact
     2761 cgcatttatc gcatcttctg tacctaaaac ttgtacataa agcgttccgt atgcgccatt
     2821 ttgcgtttgc gttaagttcc cgtggagaac atttagcata acatcatttt cttttgctac
     2881 ttgagaaatg actggttgag ttgcattttc gctcataaag agtaatttaa caatttttcc
     2941 ttctgcataa ttatcgagta atagatggat taattcttct gtttcgtctg aatcggttac
     3001 ttggcggacg aagcgctgtg ttactttttc ttgtggatga cggaaaacat ctaaaacatc
     3061 accgagttca acaacttttc cgttttccat tactgcgaca cgattacata ttttccggat
     3121 aacgtgcatt tcatgggtga taacgatgat agttaaatgg aggcgtttgt taatatctag
     3181 gaggagttct aaaacttcat cggtagtttg tggatctagt gcggaagttg cttcatcaca
     3241 aagcaatact tttgggttgt tcgccagcgc tcttgcgata ccgacacgct gcttttgacc
     3301 gccgcttagc tcagatggat aggcattttc ttttccttcc aagccaacaa ggcggatgag
     3361 ttcatttact cgaaaacgtc ttttttcacc tcgtacacct gcaatttcta gtggaaacgc
     3421 gatattttct gccactgtac gtgaccataa taaattaaaa tgttgaaaaa tcattccaat
     3481 ttgctgacga gcttttctaa gcttactacc gcgaatctgg ctaataagta aattgtctac
     3541 ttccaccgtc ccggcactcg gtagttccag tccgttaaac atccggatta gcgtactttt
     3601 accagctcca gaatatccaa ctactccaaa aatctcgcct tgttcaattt ctaaatcgac
     3661 atggtcgact gcgagaactt tattgtttct ggacgtgtat tcttttacaa cgttttgtaa
     3721 cgtaatcatc tctatcacct tttctacatt ctgatataca aaaaaacctt tctgctgatg
     3781 agcagaaagg cagcattttt tcaaatggac taacttcctt ctcatctttc agaacaatta
     3841 gttgttctgc atgacttagc accttaaaca cataatgaat tattgtttag gttgctgggt
     3901 ttcacagggc atttccctcc accactctgg ataagatttc tacatattat taaatcactt
     3961 catttgtgac tatagtgacg tttcttgttt tttcatatta ccttgtctag tagactttgt
     4021 caataacttt ctcacttatg ttaatttatt tgtaagttat ttcactaata atactattat
     4081 ctgtctgttc attctgacta gccatttgag aggctatttt aatttgggcc ctattttgat
     4141 atttgagttc gctattatta atttgaacta tgtacataaa taccgcaata accgtaatac
     4201 aagcaacaac aattaaaaca atatgttttt tcattttcct ctcctccgtg atttatattc
     4261 tacagaaaga acataaatca cgcggaaaga aacttttaag aattgttaaa gattaaatta
     4321 gtggcagttt aacgataaaa ctggtttggc gttttttgct ttcggcagta acaattccgc
     4381 catgtttttc aacaatagat ttagcaatcg caaggcctaa tccggttcca gtcgtcgtcc
     4441 gatttttatc tactttgtaa aagcgctcga acaagtaagg taaatcgaca ttaggaattt
     4501 cttcaccata attcgttacg cgcacaacag ccatattatc ttctttctta gcactaacat
     4561 caatttgttt gttgccttct ccgtatctaa gggcattcga aaataaattc tcaaataagc
     4621 gcatgatttg gttgccatca ccgccaataa ttagtttgtt agcatcaaaa tgttcgacaa
     4681 tctgcatatt tcgttctgca gctcgcccgt cgtactccgc cactaattgc cgtagcaact
     4741 caataatgtc taactcatct ttctttagtt ggtaatccac gctatcgagc cttgtataag
     4801 aaaacaaatc atcaataagt ttgtgcaagt gacgcgcttt cccgtacaca agctcggtgt
     4861 aataacgcag ctcaatttca tcgcgataac ggtcttcatg tatataactt aaatagccta
     4921 aaatggatgt aagtggtgtt cgcaaatcat gcgaaacatt cgtaatcaaa tcatttctgg
     4981 cttgctgggc ctgttcttcc tgctgcatta attttttctg ccgttcccgc atattttcga
     5041 tgttacgttc cagttcttga atttccggca caaaactttc tgtgtcaact ggcttcccgt
     5101 cgttaagcgc aaaattaatc gtacgcagtt gttttttcaa aattctttga cgcatcaaac
     5161 gatagaaaaa agcaaagaat agacaagcta ttaaaaagat aatcagaaat tttagcgaca
     5221 tcatccaaaa agattgcatg attcgcgtat atttattcgt tccaaataat tgaacaatag
     5281 cttgtgacac ttcccgtaaa aacaaagaat catcccgaat ggaaatgctc cataaataaa
     5341 tagtttggat ggtaatcaac gccaaaatcc aagaaacagc tgcaaaaaaa gtcgcctgcc
     5401 aaacattcat cacatggcta attttcgtaa acaacagttc cagtttagat ttcaattttg
     5461 taccctactc cccaaatagt cttaatcaca ttttctccac ccatagcctc gcgtaactta
     5521 tcacgcaaat tactaatatg gaccattact gtcttactcg ctccaagggc cttttcttgc
     5581 caaatcttct caaaaatata ttctgaacta aaaacgcgcc ctggctcact cgctagtaaa
     5641 aatagaatat caaactcaga agtcgtcaaa tgaagttctt tgccactaac agttacaacg
     5701 tgaaggccac ggtcaactac tatcggccca atgatgactt tatcttgact aacaggctct
     5761 gcttgactca tttgctgcat tcttcttaga atagctttca cgcgtacaga aagctctaat
     5821 ggattgaatg gcttgaccat ataatcgtcc gcacctgtta aaagacccat gattttgtcg
     5881 ttgtcttcag ccttggcact aagcattagg atgggagtca aaatcccatt atctctcatt
     5941 aatcggcata cttctaagcc gttcatttca ggcatcataa tatctaatat cactaaagtt
     6001 ggctgttttt cttgaactaa acgccatact tccgcaccat cataagcttg ataaatcgta
     6061 tatccttcat tttgtaaata taattttact aaatcaacaa tttctttgtc atcatcagca
     6121 attaaaatag aagttgtcat actcattgtc ctttccagtc ttatttctac ctattgtaac
     6181 actttagcaa caaatcgaat agaaagagct cggattaaat tctggtaaga acccgttctt
     6241 cttccggctc taagtggata aggacttccg ctttagcata aaaattcata atctctgcct
     6301 caatttcgtc acatagcgaa tgagcacttt caatcgtcat cgatgaagat acaactaaat
     6361 gaaaatcaat atactcttct gctcctgccc gtctcgagcg aaaatcatga aattcaataa
     6421 atcttgcttt atgagccaaa ataatttgct tgatagcctc ttcttcatcc gcagacaagc
     6481 gtttgtccat taatggaggg aaagactctt ttaacaattt ataagcctca tacatgatat
     6541 aaaacgccgt taaaatcgcg atgacaggat ctaaccaaag ccagccggtt atgtatacaa
     6601 ggaacaaact aagcgcaatc ccaagcgatg tgaacacgtc tgtatataaa tgtaatgcat
     6661 tggatttcat cgctactgaa ttagcttcat cagccgcttt tttgatgata cgagacacga
     6721 taatattcac gatagcgcca aaaagcatta ccataatacc aagcgctgga aaacgaattt
     6781 cgtgaggatt tacaagttta ttaactgatt ccacaatgat ccaaatcccc gctacaaaaa
     6841 taagtaaagt ttcaatggtt cccgcaatat tctctgcttt tccatgtcca tatggatggt
     6901 cttcatcggc cggttgatta gaaatccgaa tcgagaagaa agtgatgatt gacgcaaata
     6961 agtccatgga cgagtgaatc ccttccgata tcactgccac agaacctgta aaaaagccga
     7021 caatcaattt aagtacaaca ataacaaaat tactacacac agataaaata gtaagattag
     7081 aatggttcat aaaaaagcct ccgatatttt atgtttcact aaaaatttct ctttataaaa
     7141 cactaattta acaactcgaa ttatcttacc acaagcagcc aaattgtgtc tatagcaacg
     7201 tttttagcta aatacagttc tatatcggga gcgaaacttt tttgctccag ggcaaaattt
     7261 aacacagaaa aaatccctgt attactcact atacaggaat tcaaaaatgg ccgttgcatc
     7321 atgtaattgg tagcttaaat cggccggttg accgttccta aatttaacta gcgccgggac
     7381 tgatgtaatt tcaagatttt gcgcaatatc aggcacataa tttaaatcta ctttcacaac
     7441 ttctgtatga acctcgtccg attctaaaac cacatccaca aggcggcttg ctatttgaca
     7501 gctaccacac attggagtaa aaaagaaaac aacgaagtcc tcaccgtttt tttgcgccgt
     7561 ccgcaaacgt tctttttccc aaatttccag gaaaaacgcc tcctatcaaa aaagaccagc
     7621 ttcggttatc ccaagccggc ctcctaaaaa ttaatctaat actttttcgt aatcgtcact
     7681 tgataaaaga gcctttacat ccgcttcttc tacttcttca agttttaaaa tccagcctgt
     7741 atcgtatgga ttgctattaa ttaattctgg ttcatcttct aatgtttcgt taacagcaac
     7801 tactttacca gttactggtg cataaaaatc agatactgtt tttacagact caatgctacc
     7861 aatagagtcg cctttagcta cagtgtcgcc aacctctggc aattcaacaa atacgatatc
     7921 ccctaattga tcttgagcaa agtccgtaat cccaataaca taactaccct cgtctgcttt
     7981 cacccattca tgttcttctg tgtacaataa gtcttttggt aaactcattt tcaaaactcc
     8041 tcctttttcg tgcaattatc tatattgact atttccaagt tgcttcaaat tcttcttctt
     8101 tgaaaccaag cgtcacttct ttgccgttcg tagttagtgg gcgtttgatt aacataccgt
     8161 ctgatgcaag taacttataa gcttcttccg gcgaaagtgt atctaattta tctttcagtc
     8221 caagttcgcg gtatttaata ccacttgtgt taaagaaacg gcggattgga agcccgctta
     8281 cttcatgcca tttttgtatt tcttccgcag ttggcgtttc tgtcttaata tctacttcat
     8341 taaaatcaac atgctcattt tcaagccatg cttttgcttt cttacaggtg ctacattttg
     8401 gataccaata aaaattaatc attttgcctc tccctccgat tgcattctac tactatcata
     8461 gtgcattttt tccgaaagta caaatggcaa cacttagaaa aaaacagagc atttgaaagc
     8521 gtattcattc gtggttttaa aaatacaaaa gccattttcg acttctgtat tttctttttt
     8581 aagacgcgtg attttcttct ttcacttcaa acatcgattt tttaaagtta aaccttatcc
     8641 cgagcaccag gccaacagcc atcatgttcc cgagcaaggc gctaccaccg taactaataa
     8701 acggaagcgg gatacctgta attggtagta agccgatatt catccccaca ttttctagta
     8761 cgtggaacat taacatcatt acaacccccg tacaaatgta agagtaaaac ggtacgccaa
     8821 catccggcgc cacacgaata atttgataaa ttaataagaa ataaattgct aataaaatac
     8881 tagctccaat aaagccataa tctccggcta caatcgtaaa aataaagtca ttgtgatttt
     8941 ctggaattgc aatggcatca tatcccgcac cgttcccaga aatctgacca gaaccaattg
     9001 ctgtcatcgc tcgcagcact tgataacccc cgccttgagg atcattctcc ggattaatcc
     9061 acgtcgtaat ccgctcaaat tgatagggtt tgaagcctag actcgtcagc caattttggt
     9121 gataaataac catccaaata agcgccgtcc caattgccgc aatcgaacca aaaagtggca
     9181 cgataatttt ccatgtaatt ccggaaataa gaatcattcc cgacataata gcgataaata
     9241 caagcgcggt ccctaaatcg ggttgcagca tgataagaat aagcggcatt aatgtaaata
     9301 agccaatctt taaaagtaac caagcatcat aactaaagcg gtggacctta taagttcggt
     9361 tatgatccca aatcactttt gctaaaacga caattaagat aaccttaaca acctcagatg
     9421 gctgaatgtt ccctaagaac gggataacaa tccagctctt tgctcctttt acttctttcc
     9481 caaaaagcaa tacaaatacg agtaaaaata gacctagtcc gtaaaagtag taagcccatt
     9541 tcgtcagacg atcataatct agttgcatca cgacaataat tgcaaatgtc gacactacaa
     9601 accacatggc ttgtttgacc acaaagtttg catcatattg attatttgtt aattgcgcac
     9661 tataaatgga caccaaactg attatcatga gtaacatcat agataggaca atcccgtaat
     9721 caatgcgtcc agctagttta ttttgttgat tcattattta attactcctt actggttggt
     9781 ttgtataaac aaaacgaacg ctttctccca aacagtttaa aaaagaaaat cagaaacgat
     9841 tttctttccc taagttaact tctggagcat tgtatctcgc cgataacacg agcccaagtg
     9901 ccataaatgc accaagaagt gagcttcccc cataactgac aaaaagtagc ggaataccgg
     9961 taattggaag aagaccaatt gtcatcccga tattttctaa aacatggaac aaaatcatcg
    10021 agcaaacacc cgtacaaata tacgaataaa aaggaatatt aatatctaat gccactcgaa
    10081 ttatttggta aatcagtaaa aagtataaca taataagtac acagccacca atgaaaccaa
    10141 aattcccacc aataatggag aaaataaaat cattatggtt ttccgggatc gcaatggctt
    10201 gattaccgat tccattccct tgtaactgcc cagaaccaat cgcttgcatc gaccgaagta
    10261 gctgcattcc gtcaccaagt ggatcctctt ccggccttaa ccaagaagta atccgtttaa
    10321 attggtaagg tttaaatcct agtttttgta agaactcttg attatacata actaagtaga
    10381 ttaatgtccc accaatgagc gcaatcgaac taaaaactgg taataaaatt ttccaagtaa
    10441 caccactaat aaataccata ccgataataa tagcaataaa tactagaatc gtcccaaggt
    10501 ctggttgaag tgctacaaga ccaagcggaa gaatagaaac aatacctatt tttaacagta
    10561 actgcatatc taagctcacg gtatgtaatt tatatttttt attatggtcc caaatgactt
    10621 ttgcaagtgc taaaatcaaa aaacttttca ttaattccga tggttgcaag ctcccaagcg
    10681 atccgatact aatccagctc ttggatcctt ttcgctcgtc accaacgata agtacgagta
    10741 caagcaataa gtttcctatc ccataaagat aatacgccgc ccattgcaac ttatcatagt
    10801 cgaaaaaaag tacaataaca acaacgaccc cagtagaaat aacaatccaa atagactgtt
    10861 gcaataagaa attatttgta tattggtcgt taacaagccc cgcgacataa atcgctacta
    10921 gaccaataat acacagcaac atcattaaaa atataatcga ataatctatt cgaactgcct
    10981 tttttctatt tctggccatt attttccgtc cttttgtgtt tgaatttaaa tgtaaaaaag
    11041 ctgctattct taaaaagagc aacagccttc atctattata ataaagttta ccttggatag
    11101 gaagcttttt caccaaattc taatcttctt tctgttttct ttaatattca aaacgagtcg
    11161 aagcaagtgg atgaatatgc tgctttccgt ctttttcggt aatatccgcc gtaatatgaa
    11221 aaacctcgcg aagaagctct gtcgtgaaaa cttctgtagg cgagccatct ttgactaatt
    11281 gtccattttc gcatacaaaa acatggtcac tgtaaattgc tgcctgattt aaatcatgta
    11341 aaacgagcac gatagttaaa ttatattctt tatttaaatg cacgagtaaa tctaaaagct
    11401 ccagttgatg cgcaatatct aaataagtcg tgggctcatc tagtaataaa atcggtgttt
    11461 tttgtgcaag agccatggcg agccaagcgc gttgtctttc tccgcctgat aacgaatgta
    11521 gcgggcgata agccaattct tctaagttgc acactttaat agcccagtga atgaccgcct
    11581 cgtcctcctc ttgcaaagtg gagagccagc ttcggtgcgg caaacggcca tacgccacta
    11641 aatcatgcac catcacatct accaaacctt ctggagcttg tgataacatc gtcatttttt
    11701 tcgctaaatc tttagatggg atttcagtaa tgtttttatc atttaagaaa atctccccgc
    11761 tatccggtgt caaaaggcgc atcatcaaac gcagcatagt cgattttccc gagccgtttg
    11821 gaccgataag cgtagtgatt ttcccttctg gaatactcgc gctcacgttt ttcatttcga
    11881 aatctctttt acgtgagaaa gaaacatttt ttagttctaa tgctgatttc atgaagcaac
    11941 cctccctctt tgaagtaaga ataagaagaa tggtgcgcct atcattgcaa gcaggattcc
    12001 aacaggaagc tcgatggatc cgaaccaact tctagctgct gtatcagcaa agccaactaa
    12061 taaagccccg ccgagtgcgg atagtggcag taagtattta tagtcatttc caatgatcaa
    12121 acggaaaata tgtggcacaa caagtccaac aaagccaata agtccagcta cactaaccgc
    12181 aaccccactg agaaaggccg ccaacattat aataaaaaag cgatgccgtt ccacagaaaa
    12241 gccaagtaat ttcgccgcat catccccaag tagcaataca ttagaagaac gaatcgcaaa
    12301 accacttaaa acaaacccga ccagcatata cggccaaatc atatccaaat gataccaact
    12361 ttttccggaa agtgtccctg tcatccaaga aataacactt tgaacccggt tgctataaag
    12421 caccattacg ccagacgtca tcgcaccaat aaacgcatta atcgccaccc cagacaaaat
    12481 tacacgtaaa ggagaaacac cgcgatccca tgcaagcaaa taaatcaaaa tagctgttcc
    12541 aaacgcccct aaaaacgcac caatcggcac aaaggaagct aacgcaggaa atgctaatgt
    12601 cattaaaatg gccacgaagc caccaccggc tgaaacccca attacgcctg ggtcagctaa
    12661 tggattccgc atcacgcctt gcagcaagca tccagcaatc gccagcgctg ctcctactaa
    12721 gaaagcaatt aataaccgcg gcaagcgcaa gttccaaatc aattggttcg ctaggtcact
    12781 tcccccgcca gttagcgtct gccaagcatc actatatgta attttcacgg accccgttgt
    12841 cagtccgtag aaaaaagcta aaataagtaa aatgattact acaataaaag ttatccgtct
    12901 acgttttcgc cgcggatcat gcgccttcac agttgtcatt agttatccac cttatttatc
    12961 tcatctgtca tataatccaa tgcttgatca atcttaattc caggatttgt tccgaatagc
    13021 tctgcaggaa gtacgacaat atgatcattt ttaacggcgc ttgttgaatt ccaagcttca
    13081 ttttgtttca tttctttctt gaatgctgct tctgtttctt tttcgtcccc accgtgaatc
    13141 attaagaaaa tcacttccgg gtcagcagca acaatctttt ctacgttcat cgaagcgtat
    13201 tgtgggaagt tttcaacgcc tttaaaatct ttcgctacat tttctccacc agcaatttct
    13261 aaaacatttc cacttaatga ggatggtagc gccgcgtaat tactgccagg agcccctaga
    13321 acaagtaatg agcgcacttt tttaccttgt tgcttcttct tcacttccgc cactttttgg
    13381 tcaatattcg cttctaactc tttggctttt gtctctttgc ctaaaagctc gccaagcacg
    13441 gctgtttgtt ttttaatttc gtcaattgag ttggctccgg tcaacacgac tttcggtccg
    13501 acgccttcca tcgcaggaac atcttttaag ttttgttctg aacttgcgac aatagcatca
    13561 gcaccaagag aggcaatttt ttctaaattc aaatcatggg tattgcccac ttctgtagct
    13621 ttcttcgcac catctggaac accactcgcg tctgttgttt ggcgacctac caccgttcca
    13681 ccaagtgcat agataatatt catatccgca ttcgtcagtg cgataatccg ttctggtttt
    13741 ttatcaaaag aaacatcacg cccagccata tctgttatcg ttagagccgc ttgcgattta
    13801 ttttccgttt tagttgtttc attattcgta tcagttgccg tatcatttcc acacgatgca
    13861 aggagtagtg cggctgttat acttaacgtc aatatagtta ttttcttcat aattcccctc
    13921 cacaacactg tccttttcat tttactaaat tataacacga tattcaaaaa gacgaacccc
    13981 taattgagaa ttattttcat ctatgttcaa ataatcgata tttcctagcc gatactttat
    14041 aattaactta aggaggcgat gaaaaatgac cgataatctt tttcctaatc tagcgcatga
    14101 aaattgcaaa gaaacgatgc ccccagtcac aacagaacaa ttcaaagaag cagccattct
    14161 cgaaaagaat cgcaaaatcg aagaaatctt aaacatcgtt gataaaaaga aaccaagtat
    14221 taaaaaataa cgaggacctg ttcgcgcagg ttctttattt tacgtttaat tccgagttaa
    14281 ctcataagat aagttatatt tattttattt cgctcaaaaa tcatgtatac tagaaaaaaa
    14341 gacacgtcag gaggccccta cattggctat tttagaactt aatttcaaat cagtttgttt
    14401 agctatgcaa acaagtgtaa cggtgatttt gcctgaaaca gatgcacttt atcatggctc
    14461 aattccgaaa tataaaacat tatatattct tcacggtttg tcgaataacc acactactta
    14521 tgtacgcaat acaaatatcg aacgctatgc cactgaaaaa gggctcgctg ttgtcatgcc
    14581 cgcagcagat catagctttt attctaacat ggttcatggt cgcgactttt ttgagtttgt
    14641 tagtacggaa ctgccgcacg ttatgaaaaa ctggttccca ctttcagata aaaaagaaga
    14701 tacttttata gctggtcatt ccatgggagg ttacggtgcg ttcaaggttg cacttacttt
    14761 tccagaaaaa ttccaagccg cggccagtat gtccggcgtc atggatatta attatatcat
    14821 taaagaagac tgcttcgaaa atttcagcac gcgtgccatc acgggtgaaa tggctagcca
    14881 aactggtacg gaaaatgatt tatttcattt attagaaact aatctccaaa accaagtgcc
    14941 attaccagcc cttttccaaa attgtggcac ggaagatttt ctatatgaag ataatcttcg
    15001 tttccgagat tttgcgcttg agaaaaatgc tccgctagag tatcgcgaag gccccggtga
    15061 ccatgattgg gatttttggg ataagagtat caaagaaatt atcgactggc ttccacttta
    15121 ataaaaagaa gactcggact caccatccaa gtcttctttt ttagtgcgta aatccgtatg
    15181 agtcgttgcg ttctttgtca tgatacagca ctctagcatg ttccagatta tgaagcgcgt
    15241 cttcaaaatc aaccgcaaac tcttcagcca cgttatagcc taagtccgcc cgacaaacaa
    15301 accgttgaat aatcgtatca cttaaatcgg ccggaagtgg ataggctgga acttgccatc
    15361 ctttcattaa aagctgatca gccaagtcat atagcgtcca ctctacatcc agtccttctt
    15421 tcattttgta acaaacaatc ggtaaattag cgccatcatt aataatttca aagtagccac
    15481 ttttttctac actttttgcc aagtaaaggg ctgttttctt tgttttttca tgaatttctc
    15541 ggtaaccttc aaaaccatat cgtaaaaaat tataatattg accaataatt tgactggcac
    15601 tacgagagaa gttaatcgcc atcgtcggca tcgaaccacc taagtagctg acttcaaata
    15661 taagctcttt tggtaaatat tctttgtctt tccataaaat ccaaccaacg ccaggataaa
    15721 ccaatccgta tttatgaccg gaagtattta tagaaacaac atttttaagg cggaaatccc
    15781 aaggtaattc cggatttaca aatggtgtaa acatcgcgcc acttgctccg tcaacatgaa
    15841 tgactaattg atgctcgttc gcttcattat atgcttctac tttttcatct aataattgaa
    15901 tatcatcaaa tttaccagta taagtaatgc ctaaaatccc gacaatccca attgtgtatt
    15961 catcaaccaa atcaaacact ttatctacat cgatactgag atgctcttta tccattggca
    16021 caacacgcat atctacatcc cagtacacac agaatttttc ccaacatact tggtagcctg
    16081 atgaaataat taagttcggt cgtttcgctt gaatatctag acctcgtttt tccgcatggt
    16141 tacgccagcg aaatttcatt gccaaaccgc caagcataca cgcttccgaa gagcctactg
    16201 tcgaagtccc caagtaagac atatcttttg gagcattcca caaatcggct aaaatattga
    16261 cgcagcgatt ttccagttca gctgtttgcg gatattcgga tttatcaatt gcatttttct
    16321 cgagcgtttc tgccatcagt atttctgcct ctttttccat gtatgtctga caaaaagttg
    16381 ctaagttttg ccgcgcattt ccctcatcca tcaactggtc tttcactagt tggtacgcaa
    16441 tacgtggttc catcggttcc ttttttaata catatttcgg gatactcgtg ctttcttcct
    16501 cagatccaaa gagtgggatt cgataacttt cctgttttcg cttgtcgtct tcactataaa
    16561 gcatcttttt tcctccttta aaataactga tcaccttctc tcaccaatac ccattaaacc
    16621 ttagagacaa accgttcaat ttttcacaat aatttgttat actacgatgg tacttataag
    16681 gaggttcgtt atgtttgatt taatttttcc acttttactt attattctcg gtgtcatcta
    16741 tcgggtgaat ccacctaaaa ataaagaaag tcgctttagt tatcgaacga aagcatcttt
    16801 aaaaaatgaa atctcttggc aaaaagcgca tcaatctcta ggaatctact ggatagttat
    16861 cggggtttct cttctagttt tgtcacttgt acttgctttt atcccgatgc atgcctttat
    16921 tcgtagctcg attttattaa caacaagtat ttttgccgta ttactttctg tcattttagt
    16981 agaaaaaaaa ctacaataaa aaaaagcacc gcgctaagca gtacttttct gtaatccatt
    17041 acatataagt ccaaaaaaat tttactcttc ttttataatt gtatttcgtt cggtgacacg
    17101 ataaatatga atagtaaggt agacacgctc gtctctcgtt agttctgtat gatgcgtatt
    17161 tattaaatag gcatcaattt ttttcgtaca tttaaaagct tctggatatt taatttgcac
    17221 ttgttcatat aaaaagtcat cgccggaatc gacaatctct tttcgaagca aacgttgcgc
    17281 gaaatactgt aaatgtgtaa taaaacgcgt gtaattcagt gaagtttcat ccaataccat
    17341 accataatga tacgtaacaa tacttaatat atcttgaaca atttgagtca tcgctacagt
    17401 catgtgcatc tgttgcccat cttgtctagc atttacaatg tgaagcgcga taaaaccagc
    17461 ttcatcctca tctaaacgaa ttccaacttc ttgctcgata aaatctagtg ctttcattcc
    17521 caccaaatac tctgcgtgat aaaatcgttt tatttcccat aataatgcgt ttttcaaatt
    17581 aataccttga ttataccgtg acacagcgaa gttaatatga tcagttaggg tcaaataaat
    17641 attgtcactt aaatctgttt ccaaagtttc ttgcgcatac tgaaccacgt catccgcaac
    17701 acgtaaatgt ttcagtggaa tctcactaag taactcagag agcttttctg aaagttcatg
    17761 tgtttccatt acgaatgttt tttcaatctt ggatacctcc acctcatctc caagtttctt
    17821 ttgaaaagca agaccacgac ccatcactac agactccttg ccacttttac cctcggcgat
    17881 tacaacattg ttattcagta tttttttgat aatcatgcat tttcacctct ttcaaaagaa
    17941 aaaaacccaa actaattcca atgctattaa tatcaaaata gcacttgaat taattcaggt
    18001 tttgcccgcc ttagcagtaa caatcctatg cttttctcta acattatagt acaaaaagaa
    18061 accgattaca agtggttttt tgatattcaa ttttggttta ctttatatct tccctacttt
    18121 accacaactt attcattgac atgtagtttt ctgcatgcta tttttggctg gaggtgataa
    18181 attatggcaa cacgctcgga acaaattttt attaatttgc ctgtaaaaga tttacaagca
    18241 accgtcgctt ttttcacaga acttggctac gaattcaatc cgcaattcac agacgaaaat
    18301 gctacccaaa tgctcatcgg agacaatatt ttcgccatgc tcttgaaaga agatttcttc
    18361 cagactttcc ataaagaagg catcgctgac acaacaaaag cacgcgaagt cctcatcacc
    18421 atcacccaag atagccgcca agcagtcgat acgctggtcg atcatgcact aaaaatcggc
    18481 gcaaaaccag caggcgaaac acaagactac gactttatgt atagcagaag ttttcttgac
    18541 ttagacaacc atctatggga aatcgcttat ttagacgaat ccgctttaca ataattacaa
    18601 aaaaagccgt tggaattcat ttgattccag cggctttctt gaatttccgt atttttttaa
    18661 tcgcccagtc gtaatgactt gatgtgcttg aaataaatat ggcgcctagt gaagttgtat
    18721 tggtccattt ataatatttt tttgtaaata gttcttcctc cgaatgccct gcaattaaaa
    18781 ccatttcttt gttatgggtt tcatccagta attcccttgc ttgcgctaaa tcagtctctt
    18841 ggtatttctg ccaaatgacc aaatttagct ctggtgtcgt tttccacgta taaccttctg
    18901 ctggcatcaa tggtttcttt ccacccattc caacttcata ccaatccagc gccatcttat
    18961 gccattcgtg caaatgtatt acgacatccc gaatattttt atcccggtct tcaaatggaa
    19021 acgtgagctg ttgcttttct tttggaatag agttgattaa atcgttcaat tgttggtact
    19081 tttccgtgct ttgttgaagt aattctactt tgttctttgg tcttaccata gaaacattac
    19141 ccctttctaa caattatgta agtttaaatt atcattttgt cgctttacgc gagggattta
    19201 catgtcattt ccctatacaa taaaggtaac acttttgcaa aggatgatgg atatgaaaaa
    19261 aatcgttata cttattataa gcttactatt actcgttggg attggattcg gtgtatatta
    19321 ctttaaaaat gccaatcata taggtgcaga cgtatcatat gttaaaatca caacggacgg
    19381 cgaaaaaggc aaaaacgtaa gcttcaacta ttcctataca atgccagcat atgatgaagc
    19441 cgggaaagaa acagaagtta ctttttctgc agacaaaaat ttacgcaaag gtgcttattt
    19501 aaaattgtat attaaagaag acaaaggcgt aacttcctat gaagaagtcc cagaaaaaga
    19561 agttccctct aaagcagcag aaaaacttaa ataatcaccc aatctcctcc ttgcgagggg
    19621 attttttcat attgaaatat atatatctat ctcgccactc gtatgatacc attcaaaatc
    19681 tgttttgtac gctcgtttta attcactatc tcgcgcccaa atcttctgcc aagtttcttc
    19741 cacgccttta tgactcgcat tatctacaga aaaaactaaa taatctccag ctttaattaa
    19801 gacactcttc tcttcatccc agtcttttgt tcctaccaac aaatcatagt cacctttgta
    19861 atcacttgca taattactat ataccgcaaa aatatctcct gcaggcttat ctaccattac
    19921 atcaccccaa agctctgcaa tcggactaaa attatcattg tttacacgta tctttttccc
    19981 aaaaatctct atattttctt gtaaaatcat tatttgccgc ctccttttaa aaccattata
    20041 gcgaacaaaa cctgacaact atctgtcaac aattcaaatt aaaataaagt ttttccactt
    20101 cggatttgta gtctttttga agcgatgcag gttctaaaat tttcacggca cttccaaaca
    20161 tcaataaaaa cggtattata ttgcgctcca aatcatagaa aaagcttaca cggacataat
    20221 cgtctccagt ctccatttct tcttgcaaaa aataatccaa caatttcccg agctgatttt
    20281 tcggaaattc caacacaatt ttcttcattt ctgcaggctg gtgctccgtt tcttcaacgt
    20341 acataatcga tttacctatt tctttcaaag aagttattcg cgttaattta aaatgacgaa
    20401 tcgctgctct tttgtggcaa taggcttcta aataccaact tccatccatc aagtttaatt
    20461 tttgcggcga aatctcccgc gttgtttccg cgccactcat agcgatatac gtaattttaa
    20521 gttgtttatt tgtcgtaaaa gctttctgga tataagcgat tttccgtttc acttccgctt
    20581 caatttgctg gcgatgttgt gtcgctgaat caaagaaaat atgcttgcta gttggttttt
    20641 cagtctgtaa tagcgtgatt ttttctcgca aaatctcgtg gctatcattc agcataaact
    20701 ccgaacgcgc ctctaatgcc tcaagcaaaa tctgtttttc cgcctccgaa aaagtaaatg
    20761 tcgccagctt atatgtatcg agcattgtga acccgccgtt ttttcccggc aaagcaacaa
    20821 ctggaaatcc cgcataaagt agcgtatcca tatcgcgata aatcgtcctt gtgcttactt
    20881 caaatttttc agccagctca cttgccagca cttttcgctc caagatcatg actagtattg
    20941 ctaaaatccg ttctagtttc accccaaaac ctccaacacc ttttagcttt attataccat
    21001 gcactattag tgatcaaaaa cccatgcata tgtgatggat aaaacttctc gcatcattcc
    21061 tttatacttt gcaaacgtct ttgatgttgc aggaaggcct gatgcatcaa tcccttgacg
    21121 ctttgctaac attagcgctc tatacatatg ataatcactt gtcacaatca ctgtttttcc
    21181 taaattaaat ttcgcattac tatatttaat attctcttct gttctcttag atttcgtttc
    21241 cgtttcaatc cgctttcttg caattccttc attaaccaaa tattcttcca taacggaagc
    21301 ttcagtcgca ctttcatcag ccccttggcc accactaaca atcactttcg cctttggata
    21361 ttcgtttaaa taagcgactg ccgcatccaa tctttcttgc aaaactaatg aaggaactgc
    21421 tggggtccca ttcacttttg cacctaaaat caacactgta tcagcatttt cacttggttt
    21481 cgtcctagaa ccactaaaca taaaggccgc gacgattaat aaatacataa aaccaattat
    21541 gattaaaata atgacaattt tcctcagact tctcatctag ttcgtcctcc ctacttctta
    21601 attaatagct tagcagaaga ttttaaataa aagagaaaga aataatcaag ttaagggaaa
    21661 ttaaaaaaac accccgaaac agttttgagg tgtttttgca ttattagttc tactaaaaat
    21721 actcacatgt gattgattct attcagtatt atcataaatt ctccggcttt tttaaatata
    21781 tcgcatacat aattaaagat aaaatacttg ctgacaccgc gatgagaaat gctggttcta
    21841 ctaattcaga gacataagta gctataatac taaaggtgaa tgaatcaaat ccaaataatg
    21901 gccgaactgc caaattaagt aaacctataa ccaatattaa aattcctata gatggtacaa
    21961 ttctattttt acctcgctga aattttggaa taaatatagt acacaaaaat cccaaatatc
    22021 ccacaatgat gattggttgc atccaaatta atttataagc aggctcatat actaattcaa
    22081 atgttgctgc atctatcccg ctagccatcc acgggaacaa caaacaaatt actgctatta
    22141 aaaaaaatgc aatgcttaat aatctataca taagcaaacc tcctcccttg gtacatatta
    22201 gcataaaaag ttaatgtata aaaaaactgc tcaagaatgg cttttcttcg ttttaaataa
    22261 gcaaaaaaat gtttttttat agtaattatt acactttatg tgttgaattt gctcttttta
    22321 gata
//
LOCUS       DABQVC010000023        22284 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.023,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000023 DABQVC010000000
VERSION     DABQVC010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 22284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22284
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.023"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..583
                     /locus_tag="IBJ56_000614"
     CDS             <1..583
                     /locus_tag="IBJ56_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase PrsA"
                     /protein_id="HAM3416896.1"
                     /translation="FKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDITVRHILV
                     DDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYAL
                     ENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAALKKE
                     LKAANIDIKDSDLKDAFADYTSTSSTSSTTTSN"
     gene            complement(665..991)
                     /locus_tag="IBJ56_000615"
     CDS             complement(665..991)
                     /locus_tag="IBJ56_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HAM3416897.1"
                     /translation="MALSSYTLFVIVGCGLVTFIPRVLPFIFVRKLQLPDVVIRYLSY
                     VPLCILTALFVQSLLITRENGFPGINIENLLASLPTILTAILTKNLMWIVIIGIISMA
                     MIRLFA"
     gene            complement(982..1689)
                     /locus_tag="IBJ56_000616"
     CDS             complement(982..1689)
                     /locus_tag="IBJ56_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HAM3416898.1"
                     /translation="MEKENELSFYDGVRACLPTVLGYAGIGIAAGVVGKASHLSLLEV
                     TLLAIIVYAGAAQFIISGLLLLQSPISAIIFTTFLINSRHFLMSMAEAPHFKKYSLWN
                     NIGIGALLTDETFGVSMNQIGNKKPVSAKWMHGINVTAYLAWIVACIVGAFIGNWLPN
                     PEQFGLDFALSAMFIGLLYLQVVSDKSKKISTSLFVMILVAVFLILFMRVMTPELAIL
                     TATLLGCLMGVIIERWR"
     gene            complement(1725..2831)
                     /gene="ispG"
                     /locus_tag="IBJ56_000617"
                     /gene_synonym="gcpE"
     CDS             complement(1725..2831)
                     /gene="ispG"
                     /locus_tag="IBJ56_000617"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HAM3416899.1"
                     /translation="MNERIFRENTRPVQVGNLTIGGSEELTIQSMTTTKTHDVEATVA
                     EIHRLEEVGCQIVRVACPDERAANALSAIKKRIHIPLVADIHFDYRLALKAIDAGVDK
                     IRINPGNIGRRDRVEKVVNAAKAKNIPIRIGVNAGSLEKKIIQKYGYPTAEGMVESAL
                     AHIKILEDLDFYDIIVSLKASDVNLAIEAYDKASRAFNYPLHLGITESGTQFAGGIKS
                     AAGLGAILSLGIGNTLRVSLSADPVEEIKVAREVLKSFGLSSNAAMLISCPTCGRIEI
                     DLIRIANEVENYIATIKAPIKVAVLGCAVNGPGEAREADIGIAGSNGEGLLFRHGKII
                     RKVPEAIMVEELKKEIDILAEEYFEKKTDLESLR"
     gene            complement(2943..3743)
                     /locus_tag="IBJ56_000618"
     CDS             complement(2943..3743)
                     /locus_tag="IBJ56_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1189 domain-containing protein"
                     /protein_id="HAM3416900.1"
                     /translation="MNIFKRFWKSLYSPADIASFRNDKIRKSIVYIIVLSFVTFLPLA
                     YFTNITTKNALKVGEETITNEIPDFKVTDGKLVLTDKNAKNIPISIDQDELHIYFDAS
                     GTLDKDDVDNKIASYDSAVAFLSDSIYITAAGVSQSVSYDTAGISDKSDLVHLYNSIE
                     SLAKYFIPIALLVLFIFTLGSVFFRVALYALFGFILSGFGRTGIAFRQNWMIASYSIT
                     LAAVFTMIMEALQIIVPFGMEINMVVSMIFVFLAIRSIPPSEPTILEK"
     gene            4045..4653
                     /locus_tag="IBJ56_000619"
     CDS             4045..4653
                     /locus_tag="IBJ56_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HAM3416901.1"
                     /translation="MTYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVA
                     GHPELASKSVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGNLK
                     AAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDGKLEIVSTANQDSPLSDGKTPV
                     LGLDVWEHAYYLKFQNRRPEYIDTFWNVINWDEANKRFDAAK"
     gene            4783..6948
                     /locus_tag="IBJ56_000620"
     CDS             4783..6948
                     /locus_tag="IBJ56_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HAM3416902.1"
                     /translation="MKLNFRKKKKDSTKKKRAIIPLRLNILFFIIFILFSVLILRLGI
                     VQIVQGDTYKRQLEETDNVTVSKNVPRGSIYDRNYNLLVGNSAVKSITYTRSQQTQTA
                     ETLHVAQTLEKLITVEPEKLTDRDLKDYWILTHQTESLNRLSAKEQALDSSKAYKIQV
                     DKVTKEDIASLTSEDLKVATIYKKMTTGYAMTESVVKNKDVTDEEIARVSENMDSLPG
                     VDTTTDWNRYYTYDETLRSILGSVSTAKEGLPKDKAEYYLSQGYSRNDRVGKSYLEAQ
                     YESVLAGSKSQSESVLDSKGNIIETVNKYEGSKGKDLVLSVDVEFQKAVEEILKKNIK
                     QGKQYAGSDLFDRAFVVAMDPYSGEVLALAGQKLNDKGEFEDYSLGTFTTAYAMGSAV
                     KGSTILGGIMDGAITNKTVFTDQPIVLKGTKPKSSWFNRTGAGNRPLDPVGALEISSN
                     SYMYQVAMKMGGANYVPNGPLRAPLSTFDDMRYYYNQFGLGVKTGIDLPGEQTGYKGD
                     DQTIGKILDFAIGQYDSYTPLQMAQYVSTIANGGSRIAPSMVKEIRNPSTNGDSVGTL
                     ATANEPKVLNKIGVSESDIKTVQQGFYEVTHGSTGTARTVFTSSDYDVAGKTGTADAF
                     YDGPKEGNKMASVWNTTFVGYAPVEKPEIAISVVVPWIYRPYGTDQKTNMKISKEVFD
                     KYFELKKERSESKKDTSKVEQPINNKEAAAKAQSEQTEN"
     gene            7146..8189
                     /locus_tag="IBJ56_000621"
     CDS             7146..8189
                     /locus_tag="IBJ56_000621"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HAM3416903.1"
                     /translation="MTKSYHVAVVGATGAVGTQMIELLEEAATFKIKQVSFLSSIRSA
                     GKKLSFRGEEVTIQEATPESFEGVDIALFSAGGSVSKALAKEAVKRGAIVIDNTSAYR
                     MDPTVPLVVPEVNEKALFSHKGIIANPNCSTIQMVAALEPIREAFGLNRIIVSTYQAV
                     SGSGVSAIQELKDGSRAVLDNKEFTPQIMPVKGDKKHYPIAFNALPQIDVFTENDYTY
                     EEMKMINETKKIMEDNTIKVSATCVRIPVVSGHSESVYIEVDKEGITAKEIQNELKNA
                     PGIVLEDDPANQVYPQAVQAAGKKEVFVGRIRADIDDPKGFHMWIVSDNLLKGAAWNS
                     IQIAESLVKLAII"
     gene            8201..9412
                     /gene="dapG"
                     /locus_tag="IBJ56_000622"
     CDS             8201..9412
                     /gene="dapG"
                     /locus_tag="IBJ56_000622"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HAM3416904.1"
                     /translation="MKIIVQKFGGTSVQNEKSRLMAFNHIKQVLKEGYKVVVVVSAIG
                     RYGDPYATDTLLELIGAKNTKLTAREQDTLLSVGETISASVFTNMLKEANIKAEAFSG
                     GQAGIITSDDHLNAKITEVDTARLKDALTNLDVAVVAGFQGITANGDISTLGRGGSDT
                     SAAALGVSLQADYIDIFTDVDGMMTADPRIVEHARSLPQVSYNEVSNMAYQGAKVIHP
                     RAVEIAMTAKIPMRIRSTYLESTGTLVTSLTNDSDHFDVKERIVTGVAHVTNLTQISV
                     QTDTVKAQQLAFKILADAGISLDFINISTNSVIFTVPEEKSHVVKQLLEDADLQTTVR
                     QACAKVSIVGAGITGVPGVTAKIVGALSEKNIPILQSADSHTTIWVLVKEEDLISAVN
                     ALHDVFCLEIK"
     gene            9427..10308
                     /gene="dapA"
                     /locus_tag="IBJ56_000623"
     CDS             9427..10308
                     /gene="dapA"
                     /locus_tag="IBJ56_000623"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HAM3416905.1"
                     /translation="MDLGKVITAMVTPIHPEKDKVCKKRIHHLVNHLIKNGSDGLVIA
                     GTTGESPTLSHDEKIKLFRQVIETNDGRAKLIAGTGSNNTAETIAFTKEVAELGGIDA
                     VLIVAPYYNKPNQDGLYAHFAAVSEASDLPVVIYNIPGRSVVNIEPETIIRLAKLPNI
                     VGVKESSGNLDNISKIIAETSDDFQVYSGDDSLTLPILAVGGNGVISVASHVVGNEMQ
                     EMIQAFERGEVQKAAQIHRELLPLMNGLFSVPNPAPTKYLLNQQGISVGPVRLPLVDL
                     NAEQGTKLQAILEGLSK"
     gene            10328..11995
                     /locus_tag="IBJ56_000624"
     CDS             10328..11995
                     /locus_tag="IBJ56_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HAM3416906.1"
                     /translation="MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPE
                     NELLGIDIVIPDFKYLEENKDRVKAVFLTHGHEDAIGALPYLLQKIKAPVYGTELTIA
                     LAKSALKEHRKLRFKNFHVVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIV
                     YTGDFKFDQSAKDGYASDLSHIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRH
                     AFRMADGRIIVACVASNLIRLQQVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIE
                     EDLIVPLKELKKYSDDEITIIETGNLGEPIQSLQLMTKGNHPQFNIKPGDTVYITTTP
                     SPSLETMMAKTMDMLYKAGAKVLTMSNNLFISGHASQEDLKLMINLLKPRYFVPVHGE
                     YRMLISHAKLAHEVGMAKSEVFIVGKGEILEYKNDKMTAGNRVYSGNTLIDGLGVGDV
                     GNIVLRDRKLLSEDGIFIVVVTLNRKSKTITSGPEIISRGFIYVRESEHLIEESSKVV
                     TKIVEKNLQETGFEWAKLKQDIRDQLNRYLFEQTKRRPMILPIIMEV"
     gene            12084..13424
                     /locus_tag="IBJ56_000625"
     CDS             12084..13424
                     /locus_tag="IBJ56_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAM3416907.1"
                     /translation="MAKFTYDVVIIGSGASGTTVAFEAQAAGLKVAIVEERSWGGTCV
                     LRGCDPKKVLVGAREARNLSTRLRGKGIKQAATISWTDLMAFKETFVENVPESRLENF
                     QEAGIETFFGAASFQDSHSLQVGDDLIQANKIVIATGATPSTLKVEGQEYIQTSDDFL
                     SLEKLPDSVVFIGGGYISFEFASIALATGREVHIIHHNSEPLKKFDPDFVAALVSNMK
                     EEGIHFHFDTDITKVENKGEKLHIHGKDGFSLQTDLIIGATGRKPNIAHLSLENANID
                     YTKKGIIVNEKLQTTNNPHIYACGDVAATKGAPLTPVVSMEAAFVAKNVIGGDEKMIY
                     PAIPSVVFTSPKLASIGISAEEAKAHPEKYQIKNHDTTNWYTYKRTNEQIALAKIIED
                     RESGQIKGAHFLSEEADYMINYVAILMKANLTLADLQSVIFAYPSPASDLTALN"
     gene            13477..14127
                     /locus_tag="IBJ56_000626"
     CDS             13477..14127
                     /locus_tag="IBJ56_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416908.1"
                     /translation="MEIWIIAGICAFLIFIAGIVILFFPARRKIGAILTSAGMLLMVG
                     SIIGIIVSFSHYQQVQNDVFNYSSKGTSQATPEETKTYKVNFEDSADNIKKKITTVTV
                     EKKETYSTSASKPVDGSITIALEITNNAVKTLETYPNQGQLEANKLDLNGGDAVLSNF
                     DTTEIKPGETAKGKIVFPVDNLDKVSDISWISYSFLSYLKDSSTPITTETGKIELK"
     gene            complement(14166..15767)
                     /locus_tag="IBJ56_000627"
     CDS             complement(14166..15767)
                     /locus_tag="IBJ56_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3416909.1"
                     /translation="MLTVNNVGLRYGDKKLFEDVSIKFLPGNCYGLIGANGAGKSTFL
                     KVLSGELDSQSGNVHIGSGERLAVLRQDHFQYDNELVLNTVIMGHERLYKIMDEKNAI
                     YMKEDFSDEDGIRAAELEGEFAELDGWEAESDAAVLLNGLGIPTDLHGKLMKDLTGGE
                     KVKVLLAQALFGKPDILLLDEPTNHLDIRAIHWLEEFLINFDNTVIVVSHDRHFLNKV
                     CTHIADLDFSKIKLYVGNYDFWYESSQLAQTMMGDRNKKKEEKMKELQDFIARFSANA
                     SKSKQATSRKKMLEKITLEDIQPSSRRYPFIQFKPDREVGNDLLTVTNLSKTIDGVKI
                     LDNLSFSINRNDKVALVGDDEVAKTVLFQILAGEMEPDEGSYKWGITTSQSYFPKDNS
                     EFFEENDMSLVEWLRQFSPEDDSEAFLRGFLGRMLFSGDEVLKKVRVLSGGEKVRCML
                     SKMMLSGSNVLLLDEPTNHLDLESITALNNGLEAFKGAMIFASHDHQLLQTIATRIIN
                     LSKDQFYNKEISYDEYLKEVMNVAE"
     gene            15907..16290
                     /locus_tag="IBJ56_000628"
     CDS             15907..16290
                     /locus_tag="IBJ56_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HAM3416910.1"
                     /translation="MNYEQILQEKVALCLTLQAAKETFPFDKKTHALTVGGKIFALIH
                     MYHGDLYVSVKCQPEKIDLLRDEYLSIKPGYHLNKKHWITLVINENYDVEAETEFALI
                     KNSYQLIFDKLPKKAQNTVRFSAID"
     regulatory      16360..16470
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            16538..17098
                     /gene="thiT"
                     /locus_tag="IBJ56_000629"
     CDS             16538..17098
                     /gene="thiT"
                     /locus_tag="IBJ56_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupled thiamine transporter ThiT"
                     /protein_id="HAM3416911.1"
                     /translation="MQNKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYV
                     IAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRS
                     NLAANQLKKAIEWAWGTMIIGGVARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGAS
                     CLGTVLVSGIIISILLKTSPKLFLPK"
     gene            17391..18584
                     /locus_tag="IBJ56_000630"
     CDS             17391..18584
                     /locus_tag="IBJ56_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464953.1"
                     /note="Members of the family are the ATP-binding subunit
                     of ABC transporters for substrates such as betaine,
                     L-proline or other amino acids, choline, carnitine, etc.
                     The substrate specificity is best determined from the
                     substrate-binding subunit, rather than this subunit, as it
                     interacts with the permease subunit and not with substrate
                     directly; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="betaine/proline/choline family ABC transporter
                     ATP-binding protein"
                     /protein_id="HAM3416912.1"
                     /translation="MLKFEHVTKTYKGGKKAVNDLTLNIDKGEFVCFIGPSGCGKTTT
                     MKMINRLIEPTEGKIFINDKDIMAEDPVKLRRSIGYVIQQIGLMPHMTIRENIVLVPK
                     LLKWSEEKKQERAKELIKLVDLPEEFLDRYPYELSGGQQQRIGVLRALAAEQNLILMD
                     EPFGALDPITRDSLQEEFKNLQKELGKTIIFVTHDMDEAIKLADRIVIMKAGEIVQFD
                     TPDEILRNPANSFVEDFIGKDRLIEAKPDVTQVAQIMNTNPVSITADKSLQAAITVMK
                     EKRVDTLLVVDEGNVLKGFIDVEQIDLNRRTATSVMDIIEKNVFYVYEDTLLRDTVQR
                     ILKRGYKYIPVVDKDKRLVGIVTRASLVDIVYDSIWGTVEDATENQEEQADSKTTEPE
                     MKQEG"
     gene            18588..19244
                     /locus_tag="IBJ56_000631"
     CDS             18588..19244
                     /locus_tag="IBJ56_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3416913.1"
                     /translation="MDAIVTFFQENGHNLLVQTWQHLFISLSAVILGIAVAVPTGILL
                     TRSPKVANFVIGVVSVLQTVPSLAILAFIIPFLGVGTLPAIIALFIYALLPILRNTFI
                     GVRGVDKNLIESGRGMGMTNWQLIINVEIPNSISVIMAGIRLSAVYVIAWATLASYIG
                     AGGLGDFIFNGLNLYRPDLILGGAIPVTILALVVEFALGKLEYRLTPKAIREAREGGE
                     "
     gene            19246..20172
                     /locus_tag="IBJ56_000632"
     CDS             19246..20172
                     /locus_tag="IBJ56_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3416914.1"
                     /translation="MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATT
                     ESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDITATRYTGTDLVGPL
                     GEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMR
                     KVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALG
                     YSTDGRIPTYNLKLLKDDKKFFPPYDASALATDEILKKHPELKTTINKLKGKISTEEM
                     QKLNYEADGKLKEPSIVAQEFLQKNNYFEGKN"
     gene            20187..20858
                     /locus_tag="IBJ56_000633"
     CDS             20187..20858
                     /locus_tag="IBJ56_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3416915.1"
                     /translation="MDTLKQLIDYYQTNGSYVMEEFWRHFLMSAYGVIFAAIIAIPLG
                     VYIARKKRLAGWVIQIANIIQTIPALAMLAVLMLIMGLGTNTVVLSLFLYSLLPILKN
                     TYTGIRNVDGALLESGKAMGMTKWQVLRLIEMPLALSVIMAGIRNALVIAIGVAAIGT
                     FVGAGGLGDIIVRGTNATNGTAIILAGAIPTAVMAILADVLLGGVERTLNPVKNKRKS
                     LTEAL"
     gene            20971..>22284
                     /locus_tag="IBJ56_000634"
     CDS             20971..>22284
                     /locus_tag="IBJ56_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HAM3416916.1"
                     /translation="MKKDKTERTKQSWRKAQNAPSLSEVNNSVAIPKNAKFFRKLFAF
                     MGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGR
                     DLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLLFGIPLIWGVCITAL
                     DIFLVLFLQHKGFRYIEVIVITLMVTILVCFGAEMVMSHPDMQAIAKGFIPQSEIVTN
                     PAMLYIALGILGATVMPHNLYLHSSIVQTRQYARTKEGKKEAIRFSFIDSTFSLTIAL
                     LINASILILAAAAFYTTGQHNVAGIEDAYKLLNPTLGSSIASTVFAVALLASGQNSTL
                     TGTLAGQIVMEGFLNIRLKPVVRRLLTRVLAIVPAVIITALYGANGINELLIFSQVIL
                     SMQLSFAVIPLVMFTSDKQKMGEFVNPTWLKIISWAVAIFIAVLNI"
BASE COUNT         7480 a         4079 c         4221 g         6504 t
ORIGIN      
        1 tttcaaagaa aatttagagt ataatttact tgttcaaaaa gcaacagaag caaacatgaa
       61 tgtaagtgaa agcaagctaa aaacctacta caaaacttgg gaaccagata ttactgtgcg
      121 ccatatttta gtagacgatg aagctacagc gaaagaaatt caaacgaaat taaaaaatgg
      181 tgaaaaattc actgatttag ctaaagaata ttctacagat acagcaacta gtacaaatgg
      241 tgggctttta gatccatttg gtcccggtga aatggacgaa acatttgaaa aagcagccta
      301 tgcattagaa aataaagatg atgtaagtgg cattgtgaaa tctacctacg gatatcactt
      361 gatccaatta gtgaagaaaa cagaaaaagg cacttacgct aaagaaaaag caaacgtaaa
      421 agccgcatat attgaatctc aattaaccac agaaaatatg acagctgcac tcaaaaaaga
      481 gttaaaagct gctaatattg atattaaaga tagtgattta aaagatgcat ttgcagatta
      541 cacaagtaca tcttcaacaa gttccacaac aacatctaac taatattact tcggatccac
      601 ctatacaaaa agccctttac tggttttgat tcccgtcaaa aacacactcc agtaaagggc
      661 ttttctatgc aaataaacga atcattgcca tggaaataat tccaataata acaatccaca
      721 ttaaattttt agtcaaaata gctgttagaa tggtaggaag tgatgcgagt aaattctcta
      781 tattaattcc tggaaaacca ttttcccttg taattaataa actttgaacg aacagcgcag
      841 tgaggataca aagggggaca tacgataaat aacgaatcac tacatctgga agctgtaatt
      901 tacgcacaaa tataaacggc aagacacgcg gtataaacgt cacaagtcca catccaacaa
      961 tgacaaataa agtataggaa cttaacgcca tctttctata atcactccca tcaaacatcc
     1021 gagtaaggtt gcagttaaaa tagctagttc tggcgtcatc acacgcataa agagaattaa
     1081 aaatacagcg actagtatca tgacgaacaa actcgtactt atttttttgc ttttatcact
     1141 cactacttgt aaatatagca aaccgataaa cattgcagac aacgcaaagt ctaaaccaaa
     1201 ttgttctgga tttgggagcc agttgccaat aaatgcccca acgatacaag cgacaatcca
     1261 tgccaagtag gcagttacat ttattccgtg catccattta gcactaacag gttttttatt
     1321 accaatctga ttcatcgaaa ccccaaacgt ttcatccgtc agaagggcac caatcccaat
     1381 attattccac aaagaatact tcttaaaatg aggagcttcc gccatactca ttaaaaaatg
     1441 ccttgaatta attaaaaaag tagtaaaaat gattgctgat atcggacttt gtagtaataa
     1501 caaaccagaa ataataaatt gcgccgcacc tgcataaacg ataatcgcaa gtagcgtcac
     1561 ttctaaaagg cttaaatggg atgcttttcc tactactcct gcagcgatac caatcccagc
     1621 ataaccaagg acggtaggaa ggcaggctct aacaccatca taaaaactaa gctcattttc
     1681 tttttccaac aaaaatcccc cttgaaacaa aaaccccgat acgattatct aaggctttcc
     1741 aaatctgttt tcttttcaaa atattcttct gccaaaatat caatttcttt cttaagttct
     1801 tctaccataa tggcttctgg tacttttcgg atgattttac catgtctaaa aagaaggcct
     1861 tctccatttg aaccagcaat tccgatatct gcttcgcgag cttctccggg accgttgacc
     1921 gcacagccaa gcacggctac tttaatcgga gctttaatcg ttgctatgta attttccact
     1981 tcattagcga tacgaatcaa atcaatctct attcgaccgc aagtagggca ggagataagc
     2041 atggcggcat tcgaggaaag gccaaacgat tttaaaacct cccgggccac ttttatctct
     2101 tccacaggat cagcactcaa agatacccgt aatgtatttc caatgcccaa actgagtatc
     2161 gctcctaaac cagcagcact ttttattcct ccagcaaact gcgtaccaga ttctgtaatt
     2221 ccaagatgta gaggataatt aaatgcgcga ctagctttat cataagcttc aattgctaaa
     2281 ttcacatcag aagctttcaa agaaacaatg atatcataaa aatctaaatc ttcgagaatt
     2341 ttaatatggg caagtgcact ttctaccatt ccttcagcag tagggtaacc gtatttttga
     2401 ataattttct tttctaaact accagcatta accccaatac ggattggaat attttttgct
     2461 ttagcagcat taaccacttt ttccactcga tcacggcgac cgatgttacc aggattaatc
     2521 cggattttgt caacacctgc atcaatagct ttaagtgcta gtcggtaatc aaaatgaata
     2581 tctgccacaa gaggaatatg aatccttttc ttgatggcac taagagcatt ggctgcacgc
     2641 tcatcaggac aagcaactcg cacaatctga caacccacct cttctaatcg gtgaatttcc
     2701 gctactgttg cttcgacatc atgtgtcttt gtagtagtca tgctttggat agttaattcc
     2761 tcactaccac caatagttaa attacctact tggactggcc gagtgttttc gcgaaagatt
     2821 ctttcattca aagagaccgc tcctttagac tagcttttat tttttatcat accattttca
     2881 tgaaacaaaa tcacgtgaat gatgccacaa aaaagccacc tgcgtgagca agtggctatc
     2941 atttatttct ctaaaattgt aggctcgctt ggaggaattg aacgaatcgc aaggaaaaca
     3001 aaaatcatac tcacgaccat attaatttcc attccaaaag gaacaataat ttgtaaagct
     3061 tccataatca tagtgaaaac tgctgccagg gtaatactgt aagaagcaat catccaattt
     3121 tggcggaagg cgataccagt tcggccaaat ccagaaagga taaatccgaa aagtgcatac
     3181 agtgctactc ggaagaagac cgagcctaac gtaaagataa agagcactag taaagcaatt
     3241 ggaataaagt atttagctaa agactcaatc gaattatata aatgaactaa atctgactta
     3301 tcactaattc ctgctgtgtc ataactaaca gattgcgaaa caccagctgc agtaatataa
     3361 atactatctg aaagaaaagc taccgcgcta tcataagaag cgattttatt atctacatca
     3421 tccttatcca gtgttccaga agcatcaaaa taaatatgta gttcatcttg atcaatcgag
     3481 ataggtatat tctttgcatt tttatctgtt aacactaatt tgccatcagt cactttaaaa
     3541 tcggggattt cattggtgat agtttcttcg ccaactttaa gtgcattttt tgttgtaatg
     3601 tttgtaaaat atgctaatgg aaggaatgtt acaaatgata aaacaataat gtacacgata
     3661 cttttcctaa ttttatcatt tcgaaacgat gctatatccg caggggagta taaactcttc
     3721 cagaagcgtt taaaaatatt cattcttttt tcaacacctc gcctaatggt ttaacttttg
     3781 agtttcaggg aaaaagatac atgtatgtgc aaaagaacgt actttttcca cctaaactta
     3841 atcatagctc gaaatggttg caaaatcaat gttgaaacat cactgagcag aaaaattgca
     3901 agcatttcag gagcatggta ggctaaatgg tgtaagaaga aactgttttt aaggttgata
     3961 gtagttctat tgaaatagga catgaaactt ttgccttata cgtcatttct tttcacgtaa
     4021 aaacaataca aggaggaatt tttaatgact tacgaattac ctaaattacc ttatacttat
     4081 gatgctttgg agccgaattt tgataaagaa actatggaaa ttcactatac aaagcaccac
     4141 aatacttatg tgacaaaact aaatgaagcg gttgctggtc atcctgaact tgcaagcaaa
     4201 tctgtggaag aattagtagc taacttagat agcgttcctg aagatattcg cggcgctgtc
     4261 cgtaaccacg gtggcggtca tgctaaccat acattattct ggtctattct tagcccaaat
     4321 ggtggcggcg ctccaactgg taatttaaaa gcagcaatcg aaagcgaatt cggtactttt
     4381 gacgaattta aagaaaaatt caatgcagct gctgcagcac gttttggttc tggctgggct
     4441 tggctagtag ttaatgatgg caaattagaa atcgtttcta cagctaacca agattctcca
     4501 ctaagcgatg gcaaaacacc tgttcttggc ttagatgttt gggaacatgc ttactacctt
     4561 aaattccaaa atcgtcgtcc tgaatatatc gacacatttt ggaatgttat taactgggat
     4621 gaagctaaca aacgttttga cgcagctaaa taataatcac aagactcact tcggtgggtc
     4681 tttttttatt tctaatgaat ttctaatgaa cttacagtgg aaaaatcatg ttatttcagc
     4741 tacaataggg aaaggtatta ttgaaaagtg aggtaactat gcgtgaaact aaattttaga
     4801 aaaaagaaaa aagattccac taagaagaaa cgcgccatca ttccactacg tttaaatatt
     4861 ctattcttta ttatttttat attattctcc gtgttaattt tacgtcttgg tattgttcaa
     4921 attgtgcaag gggatacgta caaacgtcaa ttagaagaaa cagataacgt aacagtttcc
     4981 aaaaacgtac cacgtggtag catttatgac cgaaattaca atttgctggt tggtaattca
     5041 gcggttaaat ctattactta cacacgtagt caacaaacac agactgcaga aactctacat
     5101 gtagcccaaa cattagaaaa gctaattact gtcgagcctg aaaagttaac tgaccgtgat
     5161 ttgaaagatt actggatttt aacgcatcaa accgaatcgc taaaccgctt atcagcgaaa
     5221 gaacaagcgc ttgattcatc taaagcctac aaaatccaag ttgacaaagt gacaaaagaa
     5281 gatatcgcta gcttgaccag tgaagactta aaagtagcaa ccatctataa gaaaatgaca
     5341 actggatatg ctatgactga atctgttgtg aaaaataaag atgtaacaga cgaagaaatc
     5401 gcacgtgtca gtgaaaatat ggacagttta cctggtgtag atactactac agactggaat
     5461 cgttattaca catatgatga aactttacgc tcaattttag gttctgtttc cacagctaaa
     5521 gaaggtctac caaaagacaa agcggaatac tacttatctc aaggatatag tcgtaatgat
     5581 cgcgttggta aaagctatct agaagctcaa tatgaaagtg tgctcgctgg atcaaaatct
     5641 caatcagaaa gcgtacttga ttctaaaggt aatattattg aaactgtcaa caaatacgaa
     5701 ggctccaaag ggaaagattt agttctttct gttgatgttg aatttcaaaa agcagtagaa
     5761 gaaattctca aaaaaaacat caaacaaggt aaacaatatg ctggttcaga tttatttgac
     5821 cgcgcattcg ttgttgccat ggatccatat tctggagaag tccttgcatt agcaggacag
     5881 aaactaaatg acaagggcga gtttgaagat tattcccttg gtacatttac aactgcctac
     5941 gcaatgggct ctgctgtcaa aggttctact atccttggtg gtattatgga cggtgctatt
     6001 acaaacaaaa ctgttttcac tgaccaacca attgtactaa aaggaacaaa accaaagagc
     6061 tcatggttta acagaaccgg agctggtaat agaccacttg accctgtagg agctttagaa
     6121 atttcttcta actcctatat gtaccaagtt gcaatgaaaa tgggtggcgc aaactatgta
     6181 ccaaacggac ctcttagagc accacttagc acctttgacg atatgcgtta ctactacaac
     6241 caattcggtc taggtgtaaa aactggcatc gaccttccag gtgaacaaac tggttataaa
     6301 ggggacgacc aaacaatcgg taaaattctc gatttcgcta tcggacaata tgactcctac
     6361 acaccacttc aaatggctca atatgtttct actattgcca atgggggctc aagaatcgct
     6421 cctagtatgg taaaagaaat tagaaatcca agtactaatg gtgactctgt cggaacactt
     6481 gcaacagcta atgaaccaaa agtattaaat aaaatcggtg tttctgaaag tgatatcaaa
     6541 acagtacaac aaggcttcta tgaagtaaca catggttcaa caggtaccgc aagaactgtt
     6601 ttcacttcaa gtgattacga tgtcgctggt aaaacaggca ccgcagatgc gttctatgat
     6661 ggaccaaaag aaggtaacaa aatggccagt gtttggaata caacattcgt cggttatgcg
     6721 ccagtggaaa aaccggaaat agcaatttcc gttgttgttc cttggattta tcgtccatat
     6781 ggtacggacc aaaaaacaaa tatgaaaatc tccaaagaag tattcgacaa atacttcgaa
     6841 cttaaaaaag aacgctctga atcgaaaaaa gatacttcaa aagtagaaca accaattaac
     6901 aacaaagaag ctgctgcgaa agcacaatca gaacaaaccg aaaattaatc aaaaaccact
     6961 ttcatttatt tggaagtggt ttttttattt caaactaaca aacaatttaa aaaaatagtt
     7021 gctaatgcgt agaaaaaact gcgaaaaggc tttgtttatg gtatgataaa gtaagtgtaa
     7081 aattaaccag atttctgttt ttaggcagga atacgaggat taaattgaag gaggaattgt
     7141 aaactatgac aaaaagctat catgtcgcag ttgtaggtgc aactggtgca gttggtaccc
     7201 aaatgattga attactagaa gaggcggcga cttttaagat aaagcaagtt tcattcttgt
     7261 cttctattcg ttctgctgga aaaaaactat ccttccgtgg tgaagaagta actattcaag
     7321 aagccacacc tgaaagtttt gaaggcgtag atatcgcttt atttagcgct ggtggttctg
     7381 tatcgaaagc acttgcgaaa gaagcagtta aacgtggagc tatcgttatt gataacacga
     7441 gtgcatatcg tatggatcca acagttcctt tagtcgttcc agaagtgaat gaaaaagcac
     7501 ttttctcaca taagggtatt attgctaatc ctaactgttc cactattcag atggtagcag
     7561 ccctcgaacc gattcgagaa gcattcggct taaatcgtat tattgtttcc acttatcaag
     7621 ctgtttctgg ctctggtgta agcgcgattc aagaattaaa agatggtagc agagcagttt
     7681 tagataacaa agaattcact ccacaaatca tgcccgttaa aggggacaaa aaacattatc
     7741 caattgcttt taatgcattg ccacaaattg acgttttcac agagaatgac tatacatacg
     7801 aagaaatgaa aatgatcaat gaaacaaaaa aaatcatgga agacaacaca ataaaagttt
     7861 ctgctacgtg cgttcgtatc ccagtagtta gcggacactc tgaaagtgtt tatatcgaag
     7921 tggataaaga aggcataact gctaaagaaa tccaaaatga actaaaaaac gcacctggta
     7981 ttgtcctaga agatgaccca gcaaatcaag tttacccaca agctgttcaa gctgcaggta
     8041 agaaggaagt cttcgttggt cgtattcgtg ctgacattga cgatcctaaa ggttttcata
     8101 tgtggattgt ttctgacaac ttactaaaag gtgccgcatg gaattcgatt caaatagctg
     8161 aaagtttagt taaactagcg attatttaga ggtgtaagta atgaaaatta ttgtccaaaa
     8221 atttggcgga acatccgtac aaaatgaaaa atcacgtttg atggcattca atcatatcaa
     8281 acaagtacta aaagaaggat ataaagttgt tgttgtcgtt tcagccattg gtagatacgg
     8341 agatccttat gcgacagaca cactattaga acttattggt gctaaaaata caaagctaac
     8401 agcaagagaa caagatactt tactctctgt aggcgaaact atttcagcat ctgtatttac
     8461 caatatgtta aaagaagcaa atattaaagc agaggcgttt tctggtggtc aagcaggcat
     8521 cattacatca gacgaccatt taaatgcaaa aatcacagaa gtggatacag ctcgtttgaa
     8581 agatgcatta acgaaccttg atgtagctgt agttgctggc ttccaaggta ttactgcaaa
     8641 tggggatatt tccacattag gacgcggagg aagtgataca tccgcagcgg ctctaggagt
     8701 ttcgttacaa gcagactata ttgatatctt tacagatgta gatggaatga tgacagccga
     8761 tccacgtatt gtagaacacg cacgttcact tccacaagta agctataacg aagtaagtaa
     8821 tatggcttac caaggagcaa aagttatcca tccacgtgca gtcgaaatcg cgatgacagc
     8881 aaaaatccct atgcgaatcc gttctactta tttggaaagc actggaacac ttgttacttc
     8941 attaaccaat gattcagatc attttgacgt gaaagaacga atagtaaccg gtgtagcaca
     9001 tgtaaccaat ttaacacaaa tatccgtaca aacagatacg gtaaaagcgc aacaactcgc
     9061 ttttaaaata ttagcagatg caggaatcag ccttgatttc attaacatct ctaccaactc
     9121 tgtcattttt acggtgccag aagaaaaatc tcatgtagta aaacaactat tagaagatgc
     9181 agacttacaa acaactgtac gacaagcttg tgcgaaagtt tctattgttg gcgccggaat
     9241 cacaggcgtt cccggtgtta ctgcaaaaat cgttggcgca ttatctgaaa aaaatatccc
     9301 tattttacaa tcagcggata gtcatactac tatttgggta ttagtaaaag aagaggactt
     9361 aatttcagca gtcaatgccc ttcatgacgt attttgtttg gaaattaagt aaggaggaaa
     9421 tgaaagatgg atttagggaa agtaattaca gcaatggtga caccaattca cccagagaaa
     9481 gataaagtat gcaaaaaaag aattcatcat ctcgtgaatc acttaatcaa aaatggctca
     9541 gacggtttag taatcgctgg aacaactggc gaatctccaa ctttatccca tgatgaaaaa
     9601 ataaaattat tccgccaagt aattgaaaca aatgacggac gtgcaaaatt aattgctgga
     9661 acaggctcca ataacacagc tgaaacaatt gcttttacaa aagaagttgc tgaactcggt
     9721 ggaattgacg ctgttttaat cgttgcaccg tattacaata aaccaaatca agatgggtta
     9781 tacgcgcact ttgctgcggt ttctgaagct tctgatttac ctgtagttat ctataatatt
     9841 ccgggtcgta gtgtggttaa tatcgagcca gaaacaatta tccgcctagc aaaattacct
     9901 aatattgttg gtgtaaaaga atctagcggt aacttggata atataagtaa aatcattgct
     9961 gaaacctcag acgatttcca agtatacagt ggggatgata gcttaacttt accaatcctt
    10021 gcagttggtg gaaacggcgt tatttctgtt gctagccatg ttgtaggaaa tgaaatgcaa
    10081 gaaatgattc aagcatttga gcgtggagaa gttcaaaaag ctgctcaaat ccaccgagaa
    10141 ttattgccac tcatgaacgg tttattctct gtaccaaacc cagcaccgac aaaatattta
    10201 ctcaatcaac aaggcattag cgttgggcct gtaagactac cacttgtaga tttgaatgct
    10261 gaacaaggaa cgaaattaca agctatatta gaaggacttt ctaaatagtt caaaggaggt
    10321 ctacgctttg acaataaaaa aagcgaaaaa cataaaaatc attccactcg gcggtgtcga
    10381 tgaaagtggc aaaaatttat atgtagtaga aatagacgaa gatatcttta tattagatgc
    10441 gggcttaatg ttcccagaaa atgaattact aggaattgat attgttattc cagatttcaa
    10501 atatttagaa gaaaataaag atcgtgtaaa agctgttttc ctaacacacg gtcacgaaga
    10561 tgcaattgga gcattgccat acttgcttca aaaaatcaaa gcaccagttt atggtacaga
    10621 attaacgata gcactggcaa aatcagcact taaagaacac cgtaaactac gcttcaagaa
    10681 tttccatgtc gttaacgaag aaacaacttt atccttttca aaaattgatg tttccttttt
    10741 ccgtacaacg cacactattc ctgattctgt tgggattgtt cttgaaacaa gcgaaggatc
    10801 tattgtttat acaggggatt tcaaattcga tcaatcagcg aaggacggct atgcttctga
    10861 tttaagccac attgcagaat ttggcgaaaa aggggtacta gctttacttt cagatagttc
    10921 agaggctgag caccctggaa caacgtctag cgatagttta attgaagaag agatcagaca
    10981 tgcttttaga atggcagatg gcagaattat cgttgcttgt gtagcttcta atttaattcg
    11041 cttacaacaa gtactcgatg catccgttgc aaccaaacgt aaagtcgcta ttgttggtaa
    11101 agaattagag cgcgttttcg aaattgctgg cagtttaggt aaaatcgtca ttgaagaaga
    11161 cttaattgtt ccgttaaaag aacttaaaaa atatagcgat gacgaaatta ctattattga
    11221 aacaggtaat ctaggagaac caattcaatc attacaatta atgactaaag gaaatcatcc
    11281 acaattcaac atcaaacctg gtgatactgt ttacattacg acgacgccat caccatctct
    11341 tgaaacaatg atggctaaaa caatggatat gctctataaa gcaggcgcga aagtgctcac
    11401 tatgagtaac aatctattca tctctggcca tgcaagccaa gaagatttaa aattaatgat
    11461 taacttatta aaaccaagat attttgttcc agttcacgga gaatatcgca tgttaatcag
    11521 tcacgctaaa ttagctcatg aagttggtat ggcaaaatca gaagtattta tcgtaggtaa
    11581 aggtgaaatt ttagaatata aaaatgataa aatgacagct ggtaatcgcg tatactctgg
    11641 taatacttta attgatggtt taggtgttgg tgatgttggt aacatcgtgc tacgcgaccg
    11701 taaattgctc tcagaagacg ggattttcat tgttgtagta acacttaatc gtaaatcaaa
    11761 aaccattact tcaggaccag aaatcatttc acgtggcttt atttatgtga gagaatcaga
    11821 acatttgatt gaagaatctt ccaaagttgt tacaaaaatt gttgaaaaaa atcttcaaga
    11881 aaccggcttt gaatgggcga aattaaaaca agacattcgt gaccaattaa atcgctactt
    11941 atttgaacaa acaaaacgac gtccaatgat tttaccaatt attatggaag tctagaatga
    12001 actgctacac attcgtgtgt ggcagttttt ttcgtttgaa agtgaaatca gacgggaaaa
    12061 caagctagga aggagtgatt taaatggcaa aatttacata tgatgtagta ataatcggaa
    12121 gtggcgcaag tggtacaacg gtagcatttg aagcacaggc agctggatta aaagtagcaa
    12181 ttgtagagga gcggagttgg ggtggaacgt gtgtcctcag aggatgcgac cctaaaaaag
    12241 ttctcgtcgg agcaagagaa gcaagaaatc tttctaccag acttcgcggc aaaggtatta
    12301 agcaagcagc gacaattagc tggacagatt taatggcatt taaagaaact tttgttgaga
    12361 atgtgccaga aagtcgtttg gaaaactttc aagaagccgg gattgaaaca ttctttggtg
    12421 cagctagttt ccaagattcc cattccttac aagtcggcga tgatttaata caagctaata
    12481 aaattgtcat cgcaacagga gcaacaccaa gcacgttaaa agtagaaggg caagaataca
    12541 ttcaaaccag tgatgatttt ttatcacttg aaaaactccc tgattctgtc gtgtttattg
    12601 gtggtggcta tatttcattt gaatttgcct ccatagcact cgcaacaggg agagaagtgc
    12661 atattatcca ccataatagt gaacctttaa aaaaatttga tcctgatttc gtggctgcat
    12721 tagtgtccaa tatgaaagaa gaaggtatcc atttccattt tgacacagat attacgaagg
    12781 ttgaaaataa gggggaaaaa ctgcatattc atggcaaaga tggattttca ttacagacag
    12841 atttaattat tggggcaact ggtagaaaac caaatatcgc gcatttatca ttggaaaatg
    12901 ccaacattga ctacactaaa aaaggcatta tcgttaatga aaaacttcaa accactaata
    12961 accctcatat ctacgcatgt ggcgatgtcg cggcaacaaa aggagcacct ttaacacccg
    13021 ttgtcagcat ggaagcagca tttgttgcta aaaatgtcat tggcggcgac gaaaaaatga
    13081 tttatccagc aataccaagc gtcgttttta cgagccccaa actggcaagc attggtataa
    13141 gcgcagaaga agcaaaagcg catccagaaa aatatcaaat taaaaatcac gacacaacaa
    13201 attggtatac ttataaacga accaatgaac aaattgcgct cgcaaaaatc attgaagata
    13261 gagagtcggg gcaaatcaaa ggcgctcatt ttcttagtga agaagcagat tatatgataa
    13321 attacgttgc catcttaatg aaagctaatc taactttggc tgatttacaa tctgttatat
    13381 ttgcctatcc atctccagca agtgacttaa ctgctttgaa ctagaggcta aatatgttat
    13441 agtgagggag aaattcgcat aaaaggagca aataagatgg aaatttggat cattgccgga
    13501 atatgtgctt tcttaatttt tatcgcaggt atcgtaattt tatttttccc agccagacgg
    13561 aagattggag ctattttaac tagtgcaggg atgttattaa tggttggctc cattattggt
    13621 atcattgtta gtttttcaca ttatcagcaa gtacaaaatg atgtgtttaa ttattcttct
    13681 aaaggaacaa gtcaagctac cccagaagaa acgaagacgt ataaagttaa ctttgaagat
    13741 tccgcagata atattaagaa aaaaatcact actgtgacgg tcgaaaaaaa agaaacttat
    13801 tcaacatccg caagtaagcc agtagacggt agtattacta tcgctttaga aattaccaac
    13861 aatgcagtta aaactctcga aacctatcca aaccaaggac aactagaggc aaacaagtta
    13921 gatttaaatg gaggagacgc tgttttatct aattttgata caactgaaat taagcctggc
    13981 gaaactgcca aaggaaaaat cgtttttccc gtagataatt tagacaaagt ttctgatatt
    14041 tcatggattt cttatagttt tctaagctat ctgaaagatt catccacacc aatcacgaca
    14101 gaaactggca aaatcgaact aaaataaaaa caatatcccg aaaatgggat attgtttttt
    14161 tgtcattatt ctgctacgtt cattacttct tttagatact catcataaga aatttcttta
    14221 ttgtaaaatt ggtcttttga taagttaatg atgcgcgttg cgattgtttg taataactga
    14281 tgatcatgag aagcaaaaat cattgcgcct ttaaatgctt ccaagccgtt attcaatgct
    14341 gtaatggatt ctaagtccaa gtggttagta ggttcgtcta gtaaaagaac gttagaacct
    14401 gaaagcatca ttttggataa catacaacga actttttctc caccagataa gacgcgtact
    14461 tttttaagta cttcatcgcc actgaatagc atacgaccaa ggaagccgcg taagaatgct
    14521 tcactgtcat cttctggaga gaattgacgt aaccattcta caagactcat gtcgttttct
    14581 tcaaagaact ctgagttatc tttcgggaaa tagctttggc ttgttgtaat tccccattta
    14641 taactaccct catcaggttc catttcacca gcaaggattt ggaaaagaac tgttttagca
    14701 acctcatcat cgccaactaa agcaactttg tcatttcgat taatcgagaa agaaagatta
    14761 tcaagaatct tcacaccatc gattgtttta gacaagtttg ttactgttag aaggtcattt
    14821 ccaacttcac ggtctggttt gaactgaatg aaagggtaac gacgactaga aggttgaata
    14881 tcttccagcg tgattttttc gagcattttt ttacgacttg ttgcttgttt tgatttcgat
    14941 gcgttcgcac tgaaacgagc aataaagtct tgtaattctt tcattttttc ttcttttttc
    15001 ttgttacgat cgcccatcat tgtttgagct aattggcttg attcatacca gaaatcatag
    15061 tttccgacat ataatttaat tttgctgaaa tcaagatccg caatgtgcgt acacacttta
    15121 tttaagaagt gacggtcatg ggatactacg ataacagtat tatcaaagtt gattaaaaat
    15181 tcttctaacc agtgaatcgc acggatgtca aggtggttgg taggctcatc cagaagtaag
    15241 atatctggtt taccgaataa agcttgtgca agaagcactt tcactttttc tccaccagtt
    15301 aaatctttca ttagttttcc gtgtaagtca gtagggatac ctaggccgtt taataaaaca
    15361 gcagcgtcag attctgcttc ccaaccatct aattcagcaa attcgccttc tagttctgca
    15421 gcgcggatac catcttcatc actgaaatct tctttcatat aaatggcatt tttttcgtcc
    15481 ataattttgt atagacgttc atgtcccatg attactgtgt taagaactag ttcattatca
    15541 tactgaaaat gatcttggcg aaggacagct agacgctcac ctgaaccaat atgcacatta
    15601 ccactttgtg aatcaagctc gccagaaagc acttttagga acgttgattt accagcacca
    15661 ttcgctccaa taagaccata acagttacct ggtaaaaatt taatcgaaac atcttcaaat
    15721 agctttttat cgccgtagcg taagccaaca ttatttacag ttaacatttt cttcctccaa
    15781 tactaagtta cttcttcttg aaatcagaaa aagcacaatt actactattt taacatggtt
    15841 agtgtagcaa agaaagcata cacacataaa taaatgttat aatatcaaaa taaggaggag
    15901 agccggatga attacgaaca aattttacaa gaaaaagtcg cgctttgtct gactttgcaa
    15961 gctgccaaag aaacatttcc gtttgataaa aaaacgcacg ctttaacagt tggtgggaag
    16021 atatttgcgc tcatacatat gtatcacggg gatttatatg ttagcgttaa atgtcagcct
    16081 gaaaaaattg atttgttgcg tgatgaatat ttgagcataa aaccaggtta ccatttaaat
    16141 aaaaagcatt ggattacact tgtaataaat gaaaattacg atgtggaagc agaaactgaa
    16201 tttgccttaa tcaaaaatag ttatcagctt atttttgata aactaccgaa aaaagcacaa
    16261 aatactgtaa gattttctgc aattgattaa agaaaacaaa taattcttta caaaaaaaca
    16321 tctcatgcta taatgattgt tgtacgataa tttcatagac gttaccacag ggggggcttc
    16381 ttagctgaga ttgagtccac gtgtttttgg attctgaccc tttgaacctg ttcgttaata
    16441 cgagcgtagg gattgtggcg attgcatttc taacaataga aactgctttc ttctggggta
    16501 cgtttttgac caaaaagaag aggggagttt attttttatg caaaacaaac gattaatcat
    16561 tttacttgag tgtgctatct ttgctgcagt tgcgatggta ttaagtttca tcccgctaga
    16621 cattggttcc agtttttcca tctcgcttgg aatgattcca atgtatgtta tcgcgattcg
    16681 acgcggtttt tgggcggctg gattcgcagg attgttatgg gggttactac atttcttaac
    16741 aggtaaggca tatatattaa tgccctccca ggcaattatt gagtatattt tggcattcag
    16801 ttttattgct ttcagcggtg tctttagcaa gcaagttcga agtaatttag ctgctaatca
    16861 actcaaaaaa gcaattgaat gggcgtgggg aaccatgatt attggaggag tagctcgata
    16921 tttttggcac tatgtcgcag gagtattatt ctggggtgct tatgcatttc aaggttgggg
    16981 agcacaacta ttttcaatcg tgatgaatgg agctagttgc cttggtaccg tccttgtttc
    17041 aggtatcatt atttcgatat tattgaagac ttcaccaaaa ttatttttac caaaataacc
    17101 aaaaggtcca gaagcaattg cttttgggcc tttttaagtg tgttataatt aaataaatac
    17161 tatattgcag cttattacaa tgctcatttt cacgattacg agtttagcat cgatgtcaca
    17221 cgtgccacaa gtacgaaatc atcttgttta gtaacttccg tttgaatgta acactgtctt
    17281 taagctgttt ttttgtattt aaaaagttta aatctatact agttagggaa attagttacc
    17341 gattgccaat ttttttggta ttggtaaaga aaaaatggag gtgtgtaagc gtgttaaaat
    17401 tcgaacacgt aacaaagact tataaagggg gcaaaaaagc agttaatgat ctaacactaa
    17461 acatcgataa aggagaattt gtttgtttta tcggtccaag tggttgtggg aaaacgacaa
    17521 caatgaagat gattaaccgg cttattgaac ctacagaagg aaaaatattt attaatgata
    17581 aagacatcat ggcggaagat cccgtcaaac taagacgttc tattggttat gttattcagc
    17641 aaattggctt gatgccacat atgacgattc gtgaaaatat cgtccttgta ccaaaattac
    17701 ttaaatggtc cgaagagaaa aaacaagaac gggcaaaaga attaattaaa ttagtagatt
    17761 taccagaaga gtttttggac cgttaccctt acgaattaag tggtggacag cagcaacgta
    17821 tcggtgtttt aagagcgctt gcagcagagc aaaacttaat tctgatggat gaaccttttg
    17881 gagcactaga tccaattact cgtgattccc tacaagaaga attcaaaaat ttgcaaaaag
    17941 aacttggcaa gacgattatt tttgttaccc atgatatgga tgaagcgatt aaactggcgg
    18001 accgtatcgt cattatgaaa gctggtgaaa ttgttcaatt tgatactcca gatgaaattt
    18061 tgcgtaaccc tgcgaattcg tttgtagaag atttcatcgg taaagatcgc ttaattgaag
    18121 cgaaaccaga tgttacacaa gtagcacaaa tcatgaacac aaatccagtc tctattacag
    18181 cggacaaatc actccaagct gcgattactg tgatgaaaga gaaacgagta gatacattac
    18241 ttgttgtcga tgaaggtaac gtgttgaaag gatttatcga tgtagagcaa attgatttaa
    18301 atcgtcgtac ggcaacttct gtcatggata tcatcgagaa aaatgtcttt tatgtgtatg
    18361 aagatacctt gcttcgcgat actgtacaac ggattctaaa acgcggctat aaatacattc
    18421 ctgtagtgga taaagataaa cgacttgtcg gaattgttac tcgtgccagc ttagtggata
    18481 tcgtgtatga ctccatttgg ggtacggtag aagatgcgac agaaaatcag gaggaacagg
    18541 cggattccaa aacgacagaa ccagaaatga agcaggaggg ataagctatg gacgcaattg
    18601 ttacattttt ccaagaaaac ggccataact tgcttgttca aacatggcaa catttattta
    18661 tctccttatc tgctgttatt ttaggtattg cggttgcagt accaactggg attttactta
    18721 cacgctcacc aaaagtagca aattttgtaa ttggtgttgt tagtgttttg caaaccgttc
    18781 cttctcttgc cattttggcg tttattattc cgtttcttgg tgttggtaca ttaccagcga
    18841 ttattgcgtt atttatttac gcacttttac caattttacg aaacacgttt attggtgttc
    18901 gaggagtcga caaaaattta attgaatctg gtcgcggcat ggggatgacg aattggcaac
    18961 taattattaa tgtcgaaatt cctaactcca tttccgttat tatggctggt attcgtttat
    19021 ctgcagtata tgttatcgct tgggcaacgc ttgcttctta cattggagct ggtggactag
    19081 gagactttat ttttaatggt ttaaacttat accgccccga tttaattctt ggtggggcaa
    19141 ttcctgttac cattttagcc cttgtagtag aattcgcgct tggaaaatta gaatatcgtc
    19201 taactccaaa agccatccgc gaagctcggg aagggggaga ataacatgaa gaaaaaattt
    19261 atcgcgttat tcagcgtatt actactaact agttctcttt tcttatctag ctgttcttta
    19321 ccaggacttg gaggcagttc caaagatact attcgcatcg gtgcaatggc aacaactgaa
    19381 tctcaaatcg tttcgaatat tttaaaagaa ttaattgaac atgatactgg cctaaaagta
    19441 gaaatcgtca acaaccttgg atcaactatc gttcagcacc aagcgatgtt aaatggggac
    19501 gtagatatta ctgcaacaag atataccggt acagatttag ttggtccact tggtgaagaa
    19561 gcaattaaag atccagaaaa agctttagca gctgttaaga aaggttttga agaacgtttc
    19621 caccaaacct ggtttgattc ttacggtttt gctaatacgt atgtgtttat ggtacgccaa
    19681 gacactgcga aaaaatacaa tttaaacacc gtaagtgata tgcgaaaagt agaaaatgag
    19741 ctcactgctg gtgtcgataa ttcttggatg gaacgtgaag gcgatggcta taaagcattt
    19801 tcaaaagcct atgatatcga attcaagaaa attttcccaa tgcaaatcgg cttgatttac
    19861 acagcactta aaaacaatca aatggatgtg gcgcttggtt attcaacaga cggacgtatc
    19921 ccaacttaca atttaaaact attaaaagat gataaaaaat tcttcccacc atatgatgct
    19981 tcagctctag caacagatga aattttaaag aaacatccag aattaaaaac gactatcaat
    20041 aaattaaaag gtaaaatttc gacagaagaa atgcaaaaac ttaattatga agcggatggc
    20101 aaattgaaag aaccgtccat cgtagcgcaa gaattcttgc aaaaaaataa ttactttgaa
    20161 ggtaaaaact aaggaggtgc caaaagatgg acacattaaa acaattaatt gattattacc
    20221 aaacaaatgg aagttatgtc atggaagagt tctggcggca tttcttgatg agtgcttacg
    20281 gagttatctt cgcagcaatc atcgcaatac cgctcggagt atatattgca agaaaaaaac
    20341 gcttagctgg ctgggttatc caaatcgcta atatcatcca aacaattccg gcactagcaa
    20401 tgttagccgt acttatgctt ataatgggct tagggacgaa tacagtcgtc ttatccttat
    20461 tcctatattc tttactacca attctaaaaa acacctatac gggcattaga aacgttgatg
    20521 gcgcactttt agaatctggt aaagcgatgg ggatgacaaa atggcaagta ctacgcctca
    20581 tagaaatgcc actcgcatta tctgttatta tggcaggtat tcgaaatgca cttgttattg
    20641 ctattggtgt agcggcaatt gggacattcg ttggagcagg aggtctcggt gatattattg
    20701 tacgcggaac aaatgcaaca aatggtactg ctatcatttt agctggtgct atcccaaccg
    20761 cagttatggc catattagcc gatgtacttc tcggtggggt cgaacgcaca ctaaacccag
    20821 ttaaaaacaa aagaaaatca ctaaccgaag ccttataaaa atatacgaaa acacaaccta
    20881 tcatttctat aaaacggttg tgtttttcgt ttgacaaaga atgtttcccg tagtaaactt
    20941 tttatcataa acgaaagaag gtcagggagc atgaaaaagg ataaaacaga acgtacaaaa
    21001 caaagctgga gaaaagcaca gaatgctccc agcttaagcg aagtaaataa ttccgtagct
    21061 attcctaaaa acgcaaaatt tttccgtaaa ttatttgcct ttatgggtcc aggtgcactt
    21121 attgcggtcg gctatgtcga tccagggaac tgggcaacat ctattgccgg cgggtcagag
    21181 tttggttaca cattgttatc cgttatttta atttctaata ttctagccgt tttattacaa
    21241 tcacttgcat caaaattagg cattgtcacc ggtcgcgatt tagcccaagc ttcaagtgat
    21301 cacttttcta aaccatttgg attcgttctt tggattttag ctgaattagc gattatagca
    21361 acagatatcg cagaagtcat cggtagtgcg attgcgctta atttactatt tgggattcca
    21421 ttaatttggg gagtttgtat tactgcatta gatatttttc tcgtattatt tttacaacat
    21481 aaaggtttcc gctacataga agttattgtt attactttaa tggttacgat tcttgtatgt
    21541 tttggtgcgg aaatggtgat gtctcatcct gatatgcaag caatagcaaa aggttttatt
    21601 ccacaatcag aaattgttac taatccagct atgctttata ttgcacttgg tattcttggg
    21661 gcaacagtga tgccacataa tttatatttg cattcatcta ttgttcaaac cagacaatac
    21721 gctcgaacaa aagaagggaa gaaagaagcg attcgttttt cctttatcga ttccactttt
    21781 tctttaacga ttgcattatt aatcaatgca tcgattttaa ttttagcggc tgccgctttt
    21841 tatacgaccg gtcagcataa tgtcgctggt attgaggatg cttacaaatt actcaatcca
    21901 acacttggaa gcagtatcgc cagcactgtt tttgcagtag cattactcgc atcagggcaa
    21961 aattctactt taacaggaac attagctggt caaatcgtca tggaaggttt ccttaatatc
    22021 cgtttaaaac cagtagtgcg ccgtttgtta acacgtgtac ttgcaatcgt tccagctgtt
    22081 attatcacag cactttacgg ggcaaatggt atcaatgaac tactcatttt tagccaagtt
    22141 attctatcaa tgcaattatc gttcgcagtt atcccattag ttatgttcac aagtgataaa
    22201 caaaagatgg gcgaattcgt caatccaaca tggttaaaaa tcatttcttg ggctgtcgcc
    22261 atttttattg cagtcttaaa catc
//
LOCUS       DABQVC010000024        21244 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.024,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000024 DABQVC010000000
VERSION     DABQVC010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 21244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21244
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.024"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(21..1199)
                     /locus_tag="IBJ56_000635"
     CDS             complement(21..1199)
                     /locus_tag="IBJ56_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-splicing ligase RtcB"
                     /protein_id="HAM3416917.1"
                     /translation="MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMP
                     DTHGGKGCVIGTTMTIQDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERV
                     PSGSKTHDKPVDEFDLEGIVAPIHRGWVARSIGTLGGGNHFIEVNQGSDGIYLVIHSG
                     SRVLGKEIAEYHQEVAYKRLDILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYD
                     LSYVTGSDLNNYLNDMEIAQKFAARNRYVMAETILKAMKWDKAVVSAFDCVHNYIDID
                     NHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQ
                     ISLESYQAAMKDVWTTSVSKKTIDEAPKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA
                     "
     gene            complement(1545..2150)
                     /locus_tag="IBJ56_000636"
     CDS             complement(1545..2150)
                     /locus_tag="IBJ56_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAM3416918.1"
                     /translation="MTNNHYYTNDETIKHNRKTWQVMLKGFNMSFTSDNGVFSKNTVD
                     FGSKLLIESFELETKIGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKEN
                     AEINKITNTHIYESSVYDSVTANDYQAIISNPPIRAGKRIVHAILEGAYDHLQETGEL
                     WIVIQKKQGGPSAEKKMEEVFGNVETVAKGKGYFIFKSVKN"
     gene            complement(2293..2655)
                     /gene="rplL"
                     /locus_tag="IBJ56_000637"
     CDS             complement(2293..2655)
                     /gene="rplL"
                     /locus_tag="IBJ56_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HAM3416919.1"
                     /translation="MALNIEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAA
                     GGAAAEQTEFTVELASAGDSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKEE
                     AEEIKAKLEEVGANVEVK"
     gene            complement(2734..3234)
                     /locus_tag="IBJ56_000638"
     CDS             complement(2734..3234)
                     /locus_tag="IBJ56_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HAM3416920.1"
                     /translation="MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITELRKQ
                     LRDAGIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSNEDVVAPAKILNDFAKD
                     HEALEIKAGVIEGKVASLEEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQ
                     KEGQEA"
     gene            complement(3482..4171)
                     /gene="rplA"
                     /locus_tag="IBJ56_000639"
     CDS             complement(3482..4171)
                     /gene="rplA"
                     /locus_tag="IBJ56_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HAM3416921.1"
                     /translation="MAKKGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEV
                     AFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVE
                     KINQGWFEFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGK
                     VEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTF
                     GPGIKVDPASL"
     gene            complement(4211..4636)
                     /gene="rplK"
                     /locus_tag="IBJ56_000640"
     CDS             complement(4211..4636)
                     /gene="rplK"
                     /locus_tag="IBJ56_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HAM3416922.1"
                     /translation="MAKKVIKEVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA
                     RTADQAGLIIPVVITVFEDRSFTFITKTPPAAVLLKKAAKVEKGSGEPNKTKVASVTR
                     AQVQEIAETKMPDLNAANVESAMLMVEGTARSMGITIQD"
     gene            complement(4763..5233)
                     /locus_tag="IBJ56_000641"
     CDS             complement(4763..5233)
                     /locus_tag="IBJ56_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416923.1"
                     /translation="MDKAKQIYLEFKREADFLELDFPLFLGDGPGFGELCMDYSEQDG
                     YMLYGYERGKRNSEFKTTDFDEFKYEVFLHICWYMGMEFELRHRKEDMRHDDNILETD
                     TRKIAFEKTLQLLKMVNPAWIDKAAQGYTAYLNLWRENKNVYFDKEAMEFKVNS"
     gene            complement(5288..5821)
                     /gene="nusG"
                     /locus_tag="IBJ56_000642"
     CDS             complement(5288..5821)
                     /gene="nusG"
                     /locus_tag="IBJ56_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HAM3416924.1"
                     /translation="MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEE
                     ETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLL
                     PEEADRILKSMGMVEKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNM
                     FGRETPVEVDFNQIEKL"
     gene            complement(5951..6130)
                     /gene="secE"
                     /locus_tag="IBJ56_000643"
     CDS             complement(5951..6130)
                     /gene="secE"
                     /locus_tag="IBJ56_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HAM3416925.1"
                     /translation="MSAIARFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFF
                     MLIDFGIEQIIKLIV"
     gene            complement(6150..6299)
                     /gene="rpmG"
                     /locus_tag="IBJ56_000644"
     CDS             complement(6150..6299)
                     /gene="rpmG"
                     /locus_tag="IBJ56_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HAM3416926.1"
                     /translation="MKKKTSLACSECGSRNYTVNVSGTQKETRLEVKKFCRHCNKHTL
                     HRETK"
     gene            complement(6403..7008)
                     /locus_tag="IBJ56_000645"
     CDS             complement(6403..7008)
                     /locus_tag="IBJ56_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sporulation sigma factor SigH"
                     /protein_id="HAM3416927.1"
                     /translation="MDNSVNQEELAMLELARSGDTEALEYFFSKYQSVIYWKSTQYFL
                     QGAERDDLIQEAMIGLFKAIRDYDKTKEASFRSFAEMCINRQLLSAVKRASRQKNIPL
                     NNSVSLDTPIAEDDMDWTLLDVISEKAAETPEDFLIKNEDLTHVARQLEQVTSEFEKE
                     VLKQYLEGKSYQEMALFFNKKEKAIDNALQRVKKKMMKQLE"
     gene            complement(7089..7601)
                     /locus_tag="IBJ56_000646"
     CDS             complement(7089..7601)
                     /locus_tag="IBJ56_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HAM3416928.1"
                     /translation="MEQILLVDGYNVIGAWPELSFLKDRDLEAARDKLVEWMAEYQSY
                     TGYRVVVVFDAQFVRGVKRKSKKYQVEVVFTHEDETADEYIEQKAIEWKNVRTQIMVA
                     TSDYTEQWAIFGQGALRISSRELLFEIQEMSKQIGQKIKRIQEEMPKSNLNLDSDVIS
                     QLEKWRRGEE"
     gene            complement(7604..8359)
                     /gene="rlmB"
                     /locus_tag="IBJ56_000647"
     CDS             complement(7604..8359)
                     /gene="rlmB"
                     /locus_tag="IBJ56_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HAM3416929.1"
                     /translation="MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVL
                     TLAKERKIQVQFVPKQKIEKVVSGAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFI
                     ILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTN
                     MVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLV
                     HLPMRGKVTSLNASVAASLLLYEVYRKRFPLEK"
     gene            complement(8359..8769)
                     /locus_tag="IBJ56_000648"
     CDS             complement(8359..8769)
                     /locus_tag="IBJ56_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HAM3416930.1"
                     /translation="MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHK
                     TATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSF
                     EAVLGYLYLAGELDRLQEWMEKALEIVEKGVETN"
     gene            complement(8773..10188)
                     /locus_tag="IBJ56_000649"
     CDS             complement(8773..10188)
                     /locus_tag="IBJ56_000649"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HAM3416931.1"
                     /translation="MSIQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARP
                     IIVFDTVRRYFTYRGYDVKFVSNFTDVDDKLIRAANELKLTVPEVADRFIGAYFDDVD
                     QLNVAKATVNPRVTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQEL
                     SELQHGARVEYNERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLG
                     DTIDIHAGGQDLVFPHHEDEIAQSEAATGKTFANYWMHNAFLNIDGEKMSKSLGNFIT
                     LHDVLKDNDPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDD
                     GEYVEEAHEDEWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSI
                     NVLREFLSMMRLFAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRD
                     ILKEKNIILEDTAQGTRFRRG"
     gene            complement(10195..10809)
                     /gene="cysE"
                     /locus_tag="IBJ56_000650"
     CDS             complement(10195..10809)
                     /gene="cysE"
                     /locus_tag="IBJ56_000650"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HAM3416932.1"
                     /translation="MPTRLKEDIATIIKNDPATKSFFDAFLTNPGLHALWWHRVANFF
                     YRHKMVLFGKVLSQNARFWTNIEIHPGATIGRRLFIDHGAGIVIGETAEIGDDVTIFH
                     GVTLGGTGKDCGKRHPTVGDGALVSAGAKVLGPVEIGAGARIGAGAVVLKDVPPGATV
                     VGIPAKVVRLNGRTVGHAVPKMDELTLRIAELENIVEKLLKEKE"
     gene            complement(11209..12684)
                     /locus_tag="IBJ56_000651"
     CDS             complement(11209..12684)
                     /locus_tag="IBJ56_000651"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HAM3416933.1"
                     /translation="MSETKRVRVRYAPSPTGFLHIGNARTALFNYLFARHNDGDFIIR
                     IEDTDAKRNIADGEESQMTNLKWLGMDWDEGVDVPGKYGPYRQSERQSIYEPLIQQLL
                     DEGLAYKCYCTEEELDAEREKQKANGEMPRYSGKCRHLTKEQQAEKEAQGFKPSIRFK
                     VPANETITFNDMVKDDVSFESNGIGDFVIAKKDGIPTYNFAVAVDDHLMEISHVLRGD
                     DHISNTPKQILIYNAFGWEPPIFGHMTLIVNESRRKLSKRDGSIIQFIEQYRDLGYLP
                     EALFNFIAMLGWSPEGEEEIFSKEEFIKMFDPKRLSKSPALFDNVKLTWVNNQYVKKL
                     PLNDVVELSLPHLQKAGVVSAELDQAELDWVHKLVSLYHEQMSYGAEIVPLSEMFFAD
                     AESITFDEEETAVLAEETVPTVISAFKKELEALEVLEAAEVKAAIKRVQKETGVKGKG
                     LFMPIRIVTTGEMHGPELPLAIEVLGREKVLNRLDTWLKNN"
     gene            complement(12703..13176)
                     /locus_tag="IBJ56_000652"
     CDS             complement(12703..13176)
                     /locus_tag="IBJ56_000652"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HAM3416934.1"
                     /translation="MIRIGQGYDVHKLAYDRELIVGGIKIPYEKGLLGHSDADVLLHA
                     ITDAIIGAIGAGDIGHFFPDTDMAFKDADSAELLEEIWQKVEADGFRLGNLDATIIAE
                     KPKMAPYVEQMKLRIAELLHADSAQVNVKATTTEKLGFTGREEGIASLAVVLLEK"
     gene            complement(13169..13867)
                     /gene="ispD"
                     /locus_tag="IBJ56_000653"
     CDS             complement(13169..13867)
                     /gene="ispD"
                     /locus_tag="IBJ56_000653"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HAM3416935.1"
                     /translation="MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADN
                     RCSKVIVVCQEEERKHVKELMSQLNVAESRIEIVKGGSERQYSVAAGLERCGTERVVL
                     VHDGARPFITLDIIDRLLIGVEQSKAAICAVKVKDTVKRVVKGVVQETVDRENLWQVQ
                     TPQAFELPILRKAHQLARKEQFLGTDEASLVERLPCPVAIVQGSYYNIKLTTPEDMPL
                     AKAILGELGGIAND"
     gene            complement(13887..14960)
                     /locus_tag="IBJ56_000654"
     CDS             complement(13887..14960)
                     /locus_tag="IBJ56_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN/TRAM domain-containing protein"
                     /protein_id="HAM3416936.1"
                     /translation="MLTWVIRVCFLILGGTTGVFSLPALWVKLGIGHILLINNPYTDA
                     LIGALIFYLITFWAVKYVEAALNWLEEKLAKIAIATLVYGGLGLFVGLVIAFFASNAL
                     SQTNIPLLNSVVPVILTLVLGYLGFRIGISRRNEFGNFVNNRNAKKRTPEEEKTEEKS
                     KKTYKILDTSVIIDGRIADILTTGFLDGTVVIPLFVLAELQHIADSSDTLKRTRGRRG
                     LDILNRIQKEEAIQVEMYEGDFEDTPEVDSKLVKLAKVMGGIVVTNDYNLNKVCEFQN
                     VPVLNINDLANAVKPVVLPGEKMTVLMVKDGKEHNQGVAYLDDGTMIVVEDGRKFINE
                     TIQVEVTSVLQTSAGRMIFAKPS"
     gene            complement(15093..16466)
                     /gene="radA"
                     /locus_tag="IBJ56_000655"
     CDS             complement(15093..16466)
                     /gene="radA"
                     /locus_tag="IBJ56_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HAM3416937.1"
                     /translation="MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKK
                     SRSAFNHTGEPSKATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIG
                     KSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
                     TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVT
                     KEGAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEV
                     ANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKV
                     SLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCF
                     IGELGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEA
                     LKKALPD"
     gene            complement(16613..19075)
                     /locus_tag="IBJ56_000656"
     CDS             complement(16613..19075)
                     /locus_tag="IBJ56_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HAM3416938.1"
                     /translation="MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEG
                     IAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTY
                     VGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP
                     TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE
                     GLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILF
                     IDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYRKYIEKDAALERRFQ
                     PIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAID
                     VIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKDAAVQGQEFEKAASLRDKEQKLKK
                     SLEETKANWQEKQGLDHSEVTEEIVAEVVASWTGIPVAKLAETETNKLLNMEKLLHER
                     VIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDED
                     SMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPD
                     VFNMLLQVLDDGRLTDSKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHK
                     AMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQIVTLLTAQLTKRLAERDIHV
                     KLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDG
                     KLEVRKKDAPKKKTTAKKVKTK"
     gene            complement(19104..20126)
                     /locus_tag="IBJ56_000657"
     CDS             complement(19104..20126)
                     /locus_tag="IBJ56_000657"
                     /EC_number="2.7.14.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein arginine kinase"
                     /protein_id="HAM3416939.1"
                     /translation="MNVFEPRLSSWLENAGDDDDVVLSSRIRLARNLKDEQFPVYEQK
                     EEIVDNIAEVFDDNFTLIKMNQISLLQKALLVEKHLISPYMMNKSEYGAVLLNEEENV
                     SIMLNEEDHLRIQCMTPGLRLFDALEAALQIDGYVEEKLSYAFDKEFGYLTSCVTNIG
                     TGMRASVMVHLPGLVTTKRIKSVIEAIRSLGFVVRGIYGEGSMPASNIFQVSNQVTLG
                     KTETEIVEDLTQVIEQIIMQERVARTTLKQKFHIALEDRVFRSYGLLMNCRIISMKEA
                     SDAISDIRLGVELGFFEHISRQKMNELVLFSQPAFLRREAGRDMDELEEKVIRAKVIR
                     EILGDK"
     gene            complement(20123..20641)
                     /locus_tag="IBJ56_000658"
     CDS             complement(20123..20641)
                     /locus_tag="IBJ56_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease"
                     /protein_id="HAM3416940.1"
                     /translation="MICQRCGENKAVIALQQLNELGKVESLYLCENCATDEALSSEKD
                     LVKAMDTFSEVALDFLTLLQKEENAQKEVVCENCHLSFEEFLKTNRVGCPECYSAFEA
                     QLVPIIGRVQNGYKKHVGKVPAEVERAEGVQNEISRLQEKLAQLVENEEFEEAAVVRD
                     EIKALKAGGEDK"
     gene            complement(20654..21112)
                     /locus_tag="IBJ56_000659"
     CDS             complement(20654..21112)
                     /locus_tag="IBJ56_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HAM3416941.1"
                     /translation="MKNISDVIEAYLKQVLESSEAVEIKRSEIADKFECVPSQINYVI
                     NTRFTMERGYIVESKRGGGGYIRIIKVKMNDKLQLLEAIISMVHDKKVSQSFSEDVIL
                     RLLEEEVITKKEARLMVAALDREVLILPLPDRDILRSRILEAMLVALKYD"
BASE COUNT         5947 a         5048 c         3239 g         7010 t
ORIGIN      
        1 tatatgctgc ttcttttcca tcatgctttg aaattgtata acggtttaat tatttcttga
       61 atctccatcg tatcttctac atcagcaagt aattgtttag cagatttata ggcttttgga
      121 gcttcatcaa ttgttttttt agaaacagaa gtagtccaaa cgtctttcat tgctgcctga
      181 tagctttcta aactgatttg cgcttttgct ttagaacgac ttagcatcct tcccgccccg
      241 tgcggcgccg agtaattcca atctgcattt cctttacccg ttgcaagaat gctgccatcg
      301 cgcatattaa gtggaacgat aatttgctct ccaagctgag cagatgtcgc accttttcta
      361 agcatgtggt tatcaatatc aatgtaatta tgcacacaat caaacgctga aacaactgct
      421 ttatcccact tcatcgcttt taaaatagtt tctgccatga cgtaacgatt acgcgctgca
      481 aatttttgtg caatttccat gtcatttaaa taattgttta aatcagagcc cgtcacatag
      541 gataagtcat aatccaattt cacttgctca cgctcaccgt tcaagttgtt ggccatttct
      601 aaattgccgc gttttttcgc agcagttgcg tctaatttca attctttacg caatatgtct
      661 aatcttttat aagctacttc ttggtggtat tctgcaattt ctttaccaag cacccgactt
      721 ccactatgga ttacaaggta aataccatca gagccttgat tcacttcaat aaaatggttc
      781 ccgccaccaa gcgtccctat acttctagct acccagccgc gatgaattgg cgcaactata
      841 ccttccaaat caaattcatc tacaggctta tcgtgtgttt tgcttccaga tggcactcgt
      901 tcgcgaataa ctttatctag cttatcaaag tccattttta acttgccagg ttttagtttc
      961 actacataca gtccgcaacc gatgtctact ccaaccaaat tcggtacaat tttatcttga
     1021 attgtcattg tcgttccaat cacacaacct ttaccaccgt gcgtgtcggg catgatccga
     1081 atcttactat ccttcgcaaa cggttgatta cacagcgtaa taatttgccc gatggtattg
     1141 tcgtccacat tatctgtaaa aactttcgct tcgttatatt ttccttttaa tgttagcatt
     1201 tctattcctc attttctgtt taatagagaa atgaaaatct ccgcttctct tcctagctgt
     1261 taaaattctc cagttctcct attgtcattc gactcacctc tttcaaattt atttttaggt
     1321 aaaaaaaagt ccctcaatca agaaagattg aaggacgtaa cttttaacgg acgctacctt
     1381 gaaaagacac cggttggcta tgcaggaacg ttaaagaaat acctattatc ttctgtcttg
     1441 attggttgtt tttttctagt atatttttca ttctaagcat atccctcagt cctttcttgg
     1501 taaaatgtat ttctatatta gcacgtttcc gcacttgata caacttaatt tttaacgctt
     1561 ttgaaaataa aatagccctt accttttgcc actgtttcaa cgttgccgaa aacttcttcc
     1621 attttctttt cagcagatgg gccgccttgt ttcttttgaa taacaatcca aagttctccg
     1681 gtttcttgca agtgatcgta agcaccttct aaaatcgcat gaactattct tttccctgca
     1741 cgaattggcg gattactaat aatcgcttgg taatcgttcg cagttacgct atcataaacc
     1801 gaactttcat agatatgcgt attcgtaatt ttattgattt ccgcattttc tttcgcaagt
     1861 tccagtgcgc gcaaattaac gtccaccatt tcaatttggc tatcagggaa cgctttcgct
     1921 accgttaacc ccatcggacc atagccacaa ccaacatcca agatttttcc tattttcgtt
     1981 tctaactcaa aagactcaat caataatttc gaaccaaaat cgaccgtatt tttggaaaac
     2041 acgccattgt cacttgtaaa actcatatta aaacctttta acatcacttg ccatgttttt
     2101 cggttgtgtt taattgtttc gtcgtttgtg tagtaatgat tgttagtcaa gaaccgcacc
     2161 ttcctttcgt atctctagct attttagcat aaaatcttac tcggatgtag catttttggt
     2221 aactcatctt aaacttgatt aattgcaata aaaaagacct tagataacaa gtatctaagg
     2281 tctttaagtt aattacttaa cttctacgtt agcgccaact tcttcaagtt tagctttgat
     2341 ttcttcagct tcttctttag caacgccttc tttaagagct ttaggagcgt tatcaactaa
     2401 ttctttagct tcttttaagc caagaccagt gatttcacga accactttga ttactttgat
     2461 tttagaatct ccagcagaag ctagttctac agtgaattca gtttgctcag cagcagcgcc
     2521 accagcagca gctacagcta caggtgctgc agcagttacg ccaaattctt cttcgattgc
     2581 ttttactaaa tcgttaagtt ctaatacaga tgcttctttt acggaagcaa tgatttcttc
     2641 aatgtttaaa gccattttga aattcctcca ataatataat tttttcggat ttaaccgaga
     2701 tttgtttgta gggtttcccc tgggtagaac agattatgct tcttgtcctt ctttttggtc
     2761 agcaacagct ttagtagcga tagcaagacc gcgaactgga gcttgaagta cgttgcaaag
     2821 catagatagc aatccttcgc gtgatggaag tgttgcaagt gctttaattt cttcaagaga
     2881 agcaacttta ccttcaataa caccggcttt gatttctagt gcttcatgat ctttagcgaa
     2941 atcgttaaga attttcgcag gcgcaactac gtcttcatta ctgaatgcga ttgcgttagg
     3001 accagttagt gctccttcta aaccttcata accgttagct tcaacagcac ggcgagttag
     3061 tgagtttttg taaactttaa actcaatacc agcatcacgc aattgtttac gtaattcagt
     3121 gatttcgcca acgtttaagc cgcggtaatc aacaattact gtagacgcac tagctgataa
     3181 ttttgtttta atttcttcta ctgcactttg tttagcttca agaactttac tcatttttcc
     3241 acctccgtcc aacaattaaa tctaattaaa cagacacaag ttccgtttga tcagcaacaa
     3301 aaaacctctg acaccgtaga catcagaggt ttttgtaaaa tgcacgcgga cgcacacttc
     3361 aaaagaaatc cctcgggtgg caaatttaag cgataaacgc gccaactgtc tacggtaagg
     3421 atatttgatt gtttcaacta gcctatctta tcaaaagaca aggggctggt caagttaaat
     3481 tttataagct agctgggtcg actttgattc caggtccgaa agtagttgtt acggaaagat
     3541 ttttcacgta agtacctttc gcagcagcag gttttgcttt ttgtagaacg tcattcacag
     3601 tacggaagtt ttctactagt ttagcagcat caaaagatac tttaccgatt gcagcgtgga
     3661 cgttaccagc tttatcaaca cggtattcta ctttaccagc tttaatttcg ttaactgctt
     3721 tagttacgtc catagttact gtaccagttt tagggtttgg cattaaacct tttggtccaa
     3781 ggacacggcc taatttacca acttcaccca tcatgtcagg tgtagcaacg ataacgtcaa
     3841 attcaaacca accttggttg attttttcaa cgaattcaga ttcaccaacg taatcagctc
     3901 cagcagcctc agcttcttta gctttttcac cttttgcgaa tactaatacg cgttgagttt
     3961 taccagtacc gtttggtaat acaacagcac cgcggatttg ttggtccgct tttttagggt
     4021 caacgccaag acggaatgct acttcaacag ttgcatcgaa tttagcgaag tcaatttttt
     4081 tagcaagttc aactgcttct tctgcagtgt aaactttgtt tgcatcaatt tgttttaaag
     4141 catcttgata ctttttgcct ttcttagcca tttcttttcc tccttaattg tcaaattgtg
     4201 aaacacacga ttagtcttgg atagtgatac ccatagaacg tgcagtacct tcaaccatta
     4261 gcattgcaga ttcaacattt gcagcgttaa ggtctggcat ttttgtttca gcaatttcct
     4321 gtacttgagc gcgagttaca gatgcaactt ttgttttgtt tggttcaccg gatccttttt
     4381 ccactttagc tgctttttta agtaatacag ctgctggtgg agttttagtg atgaacgtaa
     4441 acgaacggtc ttcaaataca gtgatcacaa caggaataat aagaccagct tgatcggctg
     4501 tgcgagcgtt aaactcttta cagaatccca tgatgtttac gccagcttga cctaatgcag
     4561 gtccaactgg aggtgcagga tttgctttac ctgctggaat ttgaagttta acttctttaa
     4621 tcactttttt tgccacgaga catacctcct taagtccgtg atgtggttga ctggggctga
     4681 tatttcccct cccacgttaa aacatacgtc aaaaacgtac ttatatatga taccatttta
     4741 aatgtgtagt tgcaagatta ttttatgaat ttactttaaa ttccattgct tctttatcga
     4801 aataaacatt tttattttca cgccataaat tcaaatacgc cgtgtaacct tgtgctgctt
     4861 tatctatcca tgccggattc accattttta gtagttgtaa tgttttttca aaagcgattt
     4921 ttctggtgtc tgtttctaaa atattatcgt cgtgccgcat gtcttctttc cggtggcgca
     4981 gttcaaactc cattcccata taccaacaaa tatgcaagaa aacctcatat ttaaattcgt
     5041 caaagtctgt tgttttaaat tcactatttc gtttgccacg ttcgtaacca tagagcatat
     5101 agccatcttg ttcactataa tccatacaaa gctcgccaaa acctggcccg tcacctaaaa
     5161 acaacgggaa atcgagctct aaaaaatcgg cttctcgttt aaattccaga taaatctgct
     5221 ttgctttgtc cattttgtcg cctccctaat aaaacaacct ccacaaataa tgtagaggtt
     5281 gcacatttta aagtttttcg atttggttga aatccacttc gactggcgtt tcacgtccga
     5341 acatgttaac catgactttc gctttacctt tgtcgttgtc catttcgtcc actttaccgg
     5401 aaaagtcagc gaatggtcct tctttgacca taactgtttc accaatttca aagtcagctt
     5461 ctgcacgttt ttcaaccatg cccatgcttt taagaatgcg atctgcttct tctggaagta
     5521 atggtgttgg ctttgatcca gaacctgctg aaccaacgaa gcctgtaaca cctggagtat
     5581 tacgaactac ataccaagaa tcatctgtca taacgatttc tactagtaca taaccaggga
     5641 aaactttacg tttaattgtt tttgttttac catttttcac ttctgtttct tcttcttccg
     5701 gtacgataac gcggaagatt ttatctgaca tgcccattga ctctacacgt ttttctaagt
     5761 ttgctttgac tttattttca taaccggagt aagtatgaac tacataccaa tttttttcca
     5821 ttatttagtt ggcagcaatc ctattttgcc gccatcctcc ttttagtata atccaaaata
     5881 aaaaacccga aagttgtacg ggttttgtct caagtaatag tatatcatta tctttgtaaa
     5941 attcctagca ctacacgata agtttaataa tttgttcgat accgaaatca attaacataa
     6001 agaataaagc aaataaaact actgtaataa ctactgttac tgtgtaggtt aaaagttctt
     6061 ttctagttgg ccacgtaact ttgtgcattt cggatgaaac attccgaaag aatcttgcta
     6121 ttgcagacat accaaaacct ccatatcgtc tattttgttt ctcgatgtaa tgtatgttta
     6181 ttgcagtgtc ggcagaattt cttcacttct aaacgcgttt ctttctgcgt cccgctaaca
     6241 ttgactgtat agtttcttga accacactca gaacaagcga gggatgtttt cttcttcata
     6301 aattatctca actccgcaat cattaaatat gccatgccaa aaaataggca catttcatcc
     6361 atataaatat aacatctggc tcttagctag tcaattgttt tttcattcta gctgtttcat
     6421 cattttcttt tttacacgtt gtaaggcatt atcgattgct ttctcttttt tgttgaagaa
     6481 aagcgccatt tcttgatagc tcttaccttc taaatattgt tttaatactt ctttttcaaa
     6541 ttcgcttgtg acttgttcta gttgacgcgc tacatgcgtt aaatcttcgt ttttgattaa
     6601 aaagtcttct ggggtttcgg ctgctttttc ggaaatcacg tctaataaag tccagtccat
     6661 atcatcctca gctattggtg tatctaatga aacagaatta ttaagcggaa tattcttctg
     6721 tctagacgcc cgcttcaccg ccgaaagaag ctgtctgtta atacacattt ctgcaaaaga
     6781 tcgaaaagaa gcttcttttg ttttatcgta atcccgaatt gctttgaaaa ggccaatcat
     6841 cgcttcttga attaaatcgt cccgctccgc accttgcaga aaatattggg ttgatttcca
     6901 gtaaataaca gactgatact tactgaaaaa atattctaac gcttctgtat caccgcttct
     6961 cgctagttca agcatcgcaa gttcttcttg gttcactgaa ttatccacta ggctaatcgg
     7021 ctcctttacg acaggatttc ttctatggtt gctccattat acatagtcaa aaacataccg
     7081 tcaatccctt actcctcgcc tcttctccac ttttcgagct gtgaaatgac atcagaatcc
     7141 agattaaggt ttgatttcgg catttcttcc tgaattcgct tgattttctg tccgatttgt
     7201 ttactcattt cttgaatttc aaaaagtaac tctcgggatg aaattcgtag tgctccttgt
     7261 ccaaaaatag cccactgttc tgtataatca gatgttgcta ccataatttg cgtccgcacg
     7321 tttttccatt caatcgcttt ttgttcgatg tactcatctg ccgtttcatc ctcatgcgta
     7381 aaaacgactt ctacctgata cttcttactt ttacgcttca cgccccggac aaactgtgca
     7441 tcaaaaacga ccacaacccg atatcctgta taactttgat attccgccat ccattcaaca
     7501 agtttatctc ttgccgcttc caaatcacga tcttttaaga aactaagttc tggccatgcc
     7561 ccaatcacat tatatccgtc aacaagcaga atttgttcca tctttatttc tccagaggga
     7621 aacgtttccg ataaacttca taaagtaaca aactagctgc aacagatgca ttaagtgatg
     7681 taacttttcc acgcattggt aaatgaacga ggaaatcaca tttttcacgt actaagcggc
     7741 tcatgccaaa cccttcgcta ccaataacaa tagcaagcgg catatccaca tccatcgtcc
     7801 ggtaatcgct actacctttc gcatctgttc caaaaatcca aagcccgcgt ttttgtagtt
     7861 cttccattgt ccgtaccata ttcgtcacgc gaaccactgg tacatattcc atcgccccag
     7921 tacttgcttt ggctacagtt tgcgtcaaac ctacagaacg acgtttcgga ataataatcc
     7981 catgtgctcc aacagaatct gctgtacgca taattgatcc taagttgtgt ggatcttcta
     8041 attcatccaa aataatgaaa aatggcattt catctttcgc ttcagcagca gcgaataaat
     8101 cgtctaactc cgcatattga taagccgcca cttgagctgc aacaccctga tgcgctccac
     8161 tcactacttt ttcaattttt tgtttgggta caaattgaac ttggattttc cgttctttcg
     8221 ctaatgttaa gacttgtttt aatacgcctt tttgtgaacc ttcttgcacg tatattttat
     8281 ggatatctct atcagatcgt aatacttcaa gaacaggatt tctcccgcca atccactctt
     8341 gctcattttc ttgttccatt agttggtttc cactcctttt tctactattt caagcgcctt
     8401 ttccatccat tcttgtaaac gatccaactc accggctaag taaagataac ctagcactgc
     8461 ttcaaaagat gtggacatac tgtaagttcc agggtcagta tttttaggca ctgtatacga
     8521 cttggcatta cgcccacgct ttgcaattct atcttcttct tccgtcaaaa aaccttccgc
     8581 aatcatagct tttagcgcca cagcttgccc ttttgcagaa acgaattttg tcgccgtttt
     8641 gtgtaactga ttcggttttg tctttccagc agcaagtaaa tattcgcgaa taaatttttc
     8701 ataaactgcg tcacccatgt aagcaagcgc gaggccatta agttgtttgt attctttcac
     8761 ttctgccatg atttaccccc gtctaaaccg cgtgccttgc gcagtgtctt ccaaaataat
     8821 atttttttct tttaaaatgt ctcgaatttc atcagcacgt gcaaaattac gttcgtttcg
     8881 cgcttgcaga cgttcttcaa ttaacgcttc tacttcgcta tcatccagcg aatcagtttg
     8941 cgtattttct aatttcaagc ctaatacttc cgcaaacaaa cgcatcatgc ttaagaattc
     9001 gcgcagaaca ttgatagaaa cagtttcttt agccaaataa atattggcac gctttgcaag
     9061 ttcgtgaaaa gtagtaattg catttgccgt attgaaatca tcatccatat catcttcaaa
     9121 agcttgtttt aattccgtta gctgttctag ccactcgtcc tcatgcgctt cttccacata
     9181 ttcaccgtca tctgtttgaa tacgatgatc aatattttgg tatgcaatca ttaaccgttc
     9241 caaaccattt ttcgcatctt ctaaaattgc atcattcagt gtaattggct tccggtaatg
     9301 tacagatagc atgaagaaac gaatcacatt tggatcattg tcttttagca catcatgcag
     9361 cgtaataaaa ttcccaagtg atttggacat tttttcccca tcaatattta aaaaggcatt
     9421 atgcatccag tagttcgcga acgttttccc agttgccgct tcggattgag caatctcatc
     9481 ctcatggtga gggaatacta aatcttgccc acccgcatga atatcaatcg tgtcaccaag
     9541 atattttttc gcaagcgccg agcattcaat atgccaaccc gggcgcccat taccaaacgg
     9601 actttcccag aaaatttcac ccggtttagc cgctttccaa agggtgaaat caagttcatc
     9661 ttgcttacgc tcattatatt caacccgagc cccgtgctgc aattccgata attcttggcc
     9721 agatagtttc ccgtaatctt tgaatttttt cgtccggaaa tacacatcac cagccgactc
     9781 atacgcatag cctttttcaa ttagcgtact gatcaattga ataatttcat ccatattctc
     9841 cgttacacgt ggattcacag tcgctttcgc cacattcagt tgatctacat catcaaagta
     9901 agccccaata aaacgatccg ccacttcggg aaccgtcaac tttagctcat ttgccgcacg
     9961 aattaattta tcatccacat ccgtaaaatt agacacgaat ttcacatcat aaccacgata
    10021 cgtaaaataa cgtcgaactg tatcgaaaac aataattggc cgcgcattcc cgatatgaat
    10081 gtagttatac acagtcggtc cgcaaacgta cattttcact tcgccatctt tgagtggttt
    10141 aaaaggctct ttctctcgtt ttaacgtatt aaaaatttgt atcgacaatc agatctactc
    10201 cttttccttc aaaagttttt ctactatatt ttctaattcc gcaattcgta atgtcagttc
    10261 atccatttta ggaaccgcat gtcctaccgt acgaccattc aaacgaacaa ccttagcagg
    10321 aatcccaaca accgttgcgc ctggaggtac atcttttaaa acgacagctc ctgctccaat
    10381 acgcgctcct gctccaattt ccaccggccc aagtactttc gctcctgccg aaacaagcgc
    10441 cccgtcaccg acagttggat ggcgtttccc gcaatctttt ccagttccac ctagcgtaac
    10501 tccgtggaat atcgttacat catccccaat ttctgctgtt tcaccaataa caattcctgc
    10561 accatgatca ataaaaagcc ttctaccaat agttgcgcct ggatgaatct ctatattagt
    10621 ccagaaacga gcgttctgcg ataatacttt tccaaacaaa accattttat gacgataaaa
    10681 aaagttcgcc acacgatgcc accaaagtgc gtgcaatccc ggattcgtta aaaaagcatc
    10741 aaaaaagctt ttcgtcgcag ggtcattctt tataattgtt gcaatatctt cttttaagcg
    10801 agttggcatt ttgttgcctc cttattcaag ttcgtacatt ttttcattgg aacctacgcc
    10861 aacaaaaaaa gcccctccga tacagagacg ctttgcgcgg ttccactctg acttgagtac
    10921 tgccaatttt agcaaatact ccaactctag gggtgggggt aacgacccac atttcgtctg
    10981 acgatactaa atttcccatc agaattcagg gaggcatttc aggagtgttc agctaagtcg
    11041 cttccagcca tggcgactct ctctataaac ttagaattcc gtacttcttc ccatcatcac
    11101 tttttccgta tatttagttc tattataaca gcaataaaat tccttgcaac tgaaatatat
    11161 caaaataaaa aagcaccccg caaatagccg agatgctttc attcaaaatt aattattttt
    11221 caaccatgta tccaaacgat taagcacttt ttcacgacca agaacttcga ttgcaagtgg
    11281 caattcagga ccatgcattt cacccgttgt cacaatacga attggcataa ataaaccttt
    11341 accttttacg cccgtttctt tttgaacccg cttgattgcc gcttttactt ccgcagcttc
    11401 tagaacttct agtgcttcta attctttttt gaatgctgaa ataacagttg gaactgtctc
    11461 ttccgcaagc actgctgtct cttcttcatc aaacgtaatt gactctgcat ccgcaaagaa
    11521 catttctgaa agtggcacaa tttccgcacc atagctcatt tgctcatgat aaagtgacac
    11581 taatttgtgc acccaatcaa gttcagcttg atctaactca gcagatacaa cacctgcttt
    11641 ttgtaaatgc ggtagcgata gttctactac atcatttagt ggtaattttt tcacatattg
    11701 gttattcacc caagtcaatt taacattatc aaataatgct ggtgatttag ataaacgctt
    11761 cggatcaaac attttaatga attcttcttt agagaaaatt tcttcttccc cttctggaga
    11821 ccaaccaagc atagcaataa agttaaacaa agcttctggt aaatatccta aatcgcgata
    11881 ttgttcgata aattgaataa tcgaaccgtc acgtttactt aatttacgtc tgctctcatt
    11941 cacaataagt gtcatatgac caaaaattgg cggctcccag ccaaatgcat tataaatcaa
    12001 aatttgctta ggcgtattcg aaatatggtc atccccacga agaacatgag agatttccat
    12061 taaatggtca tccactgcta cagcaaagtt ataagtcgga attccatctt ttttcgcaat
    12121 aacaaaatcg cctattccat ttgattcaaa agaaacatcg tctttcacca tatcgttaaa
    12181 agtgattgtt tcatttgctg gcactttgaa acgaatactt ggtttaaaac cttgcgcttc
    12241 tttctccgct tgttgttctt ttgttaaatg acgacatttc ccgctataac gaggcatttc
    12301 accgtttgct ttttgttttt cacgttcagc atccagctct tcttccgtac aataacattt
    12361 ataagccaaa ccttcatcca gaagttgttg aattaacggt tcataaatgg attgacgttc
    12421 cgattgacgg taaggtccgt attttccagg aacatccaca ccttcatccc agtccatacc
    12481 tagccatttc aaatttgtca tctgactttc ttcaccgtca gctatgttac gtttcgcatc
    12541 cgtgtcttca attcgaatga taaaatctcc atcattatgt cttgcaaata aatagttaaa
    12601 tagggcagta cgcgcattcc caatatgcaa aaatccagtt ggacttggtg cataacgtac
    12661 acgtactcgt tttgtttcac tcacaattat tcactccttc aattattttt caagtaagac
    12721 aacggctaga cttgcgatgc cttcttcccg accagtaaac cctaatttct ctgtcgtagt
    12781 cgcctttaca ttaacttggg ctgaatccgc atgtagcaac tccgcaattc gaagcttcat
    12841 ttgctccaca tatggcgcca tttttggctt ttcagcaata atagtagcat ctagatttcc
    12901 aagacgaaaa ccatccgcct ctaccttctg ccaaatttcc tcaagtagct cagctgaatc
    12961 cgcatcttta aaagccatat ctgtgtccgg aaaaaaatga ccaatatcac cagcgccaat
    13021 tgcgcctatg atagcatcag taatagcatg aagaagtaca tccgcatcac tgtgacctag
    13081 taaccctttc tcataaggaa ttttaatccc gccaacaatc agttctcggt cataagcaag
    13141 tttatgtaca tcataacctt ggccaattct aatcatttgc tatccctcca agttccccta
    13201 aaatcgcctt agcgagcggc atatcttcag gagttgtcag cttaatatta taatagcttc
    13261 cttggacaat agcaacagga caaggaagtc gctcaaccag actagcttca tccgttccta
    13321 aaaactgttc ttttcgagca agctgatgcg cttttcgtaa aataggcagt tcaaaagctt
    13381 gcggcgtttg aacttgccaa agattttcac ggtcaacagt ttcttgaacg acacctttca
    13441 ccactcgttt caccgtatct tttactttta ctgcacaaat cgcggcttta ctttgctcta
    13501 caccaattaa taatcgatca ataatatcta acgtgataaa cggtcttgcg ccatcatgta
    13561 ctaagacaac ccgctctgtc ccacaacgtt caagacctgc tgccacacta tattggcgtt
    13621 cacttccacc tttcacaatc tcaattcggc tttcagcaac gttaagctga ctcattaatt
    13681 ctttcacatg ctttctttcc tcttcttgac acacaacaat cactttggaa caacgattat
    13741 ctgctaaaaa aggacgcaag gcatgaatga aaattggttc accaactaac tctagccaca
    13801 ttttattttt ctgggcattc atacgtttcc cttgacctgc cgctaaaaaa accaactcat
    13861 aattcatgct tatttcctcc ttctaatcag gatggtttag caaaaatcat tcttcctgct
    13921 gatgtttgaa gtacactcgt tacttccact tgaattgttt cattaataaa tttacgacca
    13981 tcttctacaa caatcattgt tccatcatct aaatatgcaa cgccttgatt gtgttcttta
    14041 ccatctttca ccataagaac agtcattttc tcacctggca aaacaactgg ttttacagca
    14101 ttcgccaaat cattaatatt taaaaccggt acattttgga attcacatac tttgttcaaa
    14161 ttataatcat ttgtaacaac aataccgccc attactttag caagtttcac aagtttacta
    14221 tccacttctg gcgtatcttc aaaatcacct tcatacattt ccacttgaat agcctcttct
    14281 ttttggattc gatttaaaat atctaatccc cggcgccctc ttgtacgttt aagcgtatcg
    14341 gatgaatccg caatatgctg aagttcggct aacacaaata gtggaataac caccgttcca
    14401 tctaaaaatc cagtagtcaa aatgtctgca atacgaccat caataattac actcgtatcc
    14461 aaaattttat atgttttctt agatttctct tctgttttct cttcttctgg tgttcttttc
    14521 tttgcatttc tgttattgac aaaatttcca aattcgttgc gacgactaat tccgatacgg
    14581 aaccctaaat aacctagaac taatgttaaa ataactggta ctactgaatt taaaagcgga
    14641 atatttgttt gacttaatgc attgctcgcg aaaaacgcaa tgaccaaacc tacaaataaa
    14701 ccaagtcccc cataaacaag ggttgcaata gcaattttag ctaacttttc ctctaaccaa
    14761 ttaagtgcgg cttctacata tttcaccgcc cagaaagtaa taagataaaa tataagtgca
    14821 ccaatcagag catcagtata aggattatta attagcagaa tgtgacctat tccaagtttc
    14881 acccatagag caggtagtga aaagactccc gttgtcccac ctagaattaa aaaacacact
    14941 cgaattaccc atgtaagcat ttagtttcct cctttccatt tttaatttat atatataatt
    15001 gggctattac caaatataca tatagcacta ttttacacta ttaaaagact ataccgcaaa
    15061 tagtactcac ggaatcaacg aagtatttag ttttaatctg gtaaagcttt cttcaaagct
    15121 tctccaatcg tttccacccc aaccacttgc acgtctttcg gtattttcca attaccttcg
    15181 ttatttttag gaataaaaat tcgcttaaag ccaagttttg cggcttcttg tacgcgttgt
    15241 tcaattcttg caacacgacg aatctcacct gtaagtccaa gttctccaat aaagcaatcc
    15301 gtacttcttg ttggtttatc acgatagcta gatgcaacac tgactgcaac cgccaaatcc
    15361 actgcaggtt catccaattt aaccccacca gctgctttca aataagcatc ttggttttgc
    15421 aacattaaac ctactcgctt ttctaaaaca gccataatta gcgaaacttt attatagtct
    15481 attcctgtcg ccattcgctt agcattacca aacatcgtag gcgaaacaag cgcttgtatt
    15541 tccacaagga cggggcgagt tccttccata gaagctacaa ccgttgaacc tgaagcgcct
    15601 tcaagacgtt cttccaagaa cacttcggaa ggattagcaa cttctacaag tccaacatct
    15661 cgcatttcaa atatacccat ttcattagtg gaaccaaaac ggtttttcac tgcacgcaaa
    15721 atccggtaag catgatgacg ctccccttca aaataaagca cagtatcaac catatgttca
    15781 agtaggcgcg gccccgcaat agcaccttcc tttgttacat gtccaacaat aaagattgca
    15841 atgttttgca ttttagcaat tcgcatcaat gtcgctgtac attccctaac ttgcgaaaca
    15901 ctccccgctg cacttgtaac atcgggatga taaacagtct gaatggagtc aatgactaca
    15961 aaatcaggct tcacaaaatc aatcgtttct tgaactgctt ctaaatttgt ttctgcatac
    16021 acatataaat tatctcccga aacttgcaag cgttccgccc gcagcttcgt ttgtttgata
    16081 gattcttctc ctgatatata caatactttt ttatttgtga gcgtcagttg agctgaaact
    16141 tgcagtaata aagtcgactt cccgatacca ggatccccac cgacaagtac catagatcct
    16201 ggaaccacac ctccgccaag aactctattt aactccggca tattggtttc gacacgtttt
    16261 tctgtttcac ttgctatttg agtaattgga gtcgctttcg aaggttctcc cgtatgatta
    16321 aaagctgagc gtgatttttt tgacggctcc aaagcttcta ccatctgatt ccactcgttg
    16381 caattcggac attttcccat ccattttgcc gattcatatc cacatgcctg acacacaaat
    16441 ttggttgtcc tttttgcttt agccatttct acatccctcc atacatatgc tccattttac
    16501 cacagatcat ctgttcgcgt taatcctttt catcaaattc gtttttttga cacgaatcct
    16561 gatttttcca taaaaaacct cccttcaaaa ttgattaagg gaggcgtgtt tgttatttag
    16621 tttttacctt ttttgcagtt gttttctttt ttggtgcgtc tttttttcta acctctaact
    16681 tgccatcttt tacaccaatt tccacgtaat cgcctacttt aatgttacca cgaagtaatt
    16741 cttcagaaag catatcttcc acttcttttt gaatagctcg tttcaaagga cgggctccgt
    16801 attctggatc gtatccgtct ttagcaattt tggatttcgc accttcagtt aatttcacat
    16861 gaatatcgcg ttcggctaat cgttttgtta attgagcagt cagcaaagta acaatttgtt
    16921 tcaattcttt ttcttgtagc gaatggaata caattgtttc atcaattcgg ttgataaact
    16981 ctggccggaa cgcctgtttt aaatcttgta aaacacggtg ctccatagct ttatggtctt
    17041 taagcggatc aataacatta aagcccattg atttatcttg tttcatttct tgagccccaa
    17101 tattggaagt cataatgatg accgtatttc taaaatcaac cacccgtcct ttagaatcag
    17161 tcaaacgacc atcgtcaagc acttgtagca acatattaaa tacatccgga tgcgcttttt
    17221 caatttcatc taaaagaact actgaataag gtttttgacg aactttttct gtcagttgcc
    17281 caccttcttc atagcctaca taacctggag gagccccaac taaacgagca gtcgagaatt
    17341 tctccatgta ctcagacatg tcaattcgaa tcatcgaatc ctcatcgcca aacatagact
    17401 cagcaagcgc gcgagcaagt tctgttttcc caacaccagt aggtccaagg aaaataaagg
    17461 aaccaattgg acgcttagga tctttaagtc cagcacgagc tctacgtaca gctagcgaaa
    17521 cagctttcac cgcagcatct tgcccaatca cgcgttcatg taaaagtttc tccatattta
    17581 aaagtttatt tgtctctgtt tccgcaagtt ttgcaactgg aatcccagtc caacttgcaa
    17641 caacttcagc aacaatctct tctgttactt cactatggtc aagcccttgc ttttcttgcc
    17701 aattcgcttt tgtttcttct aatgattttt taagtttttg ttctttatcg cgtaatgacg
    17761 ctgctttttc aaattcttgc ccttgaacag ccgcatcttt ttcttttttc aaatcggata
    17821 aattgttttc catttctttt acattttttg gcgttgtaaa agatttcaaa cgtactttag
    17881 aaccagattc atcaataaca tcaatcgctt tatccggtaa gaaacggtct gaaatgtacc
    17941 gatcagatag acgaacagca gcctcaagcg cttcatcagt aatcgcaaca cggtgatgcg
    18001 cctcataacg atcacgcaac ccatgtaaaa tttgaatgga ttcttctaca gttggctcat
    18061 ctactttaat cggttggaaa cgtctctcaa gtgcagcatc tttttcaata tatttacggt
    18121 actcatccag tgttgttgca ccaatacatt gcaactcacc acgagctaga ggcggcttca
    18181 agatattcga ggcatcaatc gcaccttccg ctccaccagc accaattaag gtatgcaatt
    18241 catcaataaa tagaataaca ttgccggctt gacgaatctc atccattact tttttcaaac
    18301 ggtcttcaaa ttcaccacga tattttgtcc ctgccacaac agtccccata tccagtgtca
    18361 ttacacgttt tccacgtaaa gtctcaggca cttcattacg aacaatttgt tgcgctagtc
    18421 cttctgcaat cgctgtttta ccaacaccag gttctccaat aagtactggg ttattcttcg
    18481 tccgacgact aagcacttca atcacacgtt ggatttcttt agaacggcca ataaccggat
    18541 ccaaattatc ttcccgagca ataactgtta aatcacgtgc caaactatct aaagtcggtg
    18601 tagcctgtgt atttgtttgt cttcctgccc cagtagcatc cccgccgcct aagagctgta
    18661 aaacttgctg acgagcttta ttcaaactaa taccaagatt acttaaaact cgagccgcaa
    18721 ctccttcgcc ttcacgaata agccccagta agatatgttc tgttccaaca taagtatgcc
    18781 ctaatttacg agcctcatcc atggacagtt caattacttt tttcgcacga ggtgtatatt
    18841 ggatcgtcgt cacagctttt tccccatgac caattaatcc ttctacctct tgctgcactt
    18901 tttcagaact aattcccagt tcatagagag ctttcgccgc aattccttcg ccttctctta
    18961 caagccctaa taaaatatgt tctgttccta aattactatg attcaaacgc atcgcctctt
    19021 cttgtgacaa cgcgagtact ttctgagctc tttgcgtaaa tcgtccaaac atcattgttg
    19081 tttcctcctt atcgtaagcc tcatcattta tcgcccaaaa tctcgcgaat cactttggcc
    19141 cgtattactt tctcttctaa ttcatccata tctcgtcctg cttctcttct caaaaaagct
    19201 ggttgcgaga atagtaccaa ttcattcatt ttttggcgag aaatatgctc gaaaaatcct
    19261 aattctacac caagccgtat atccgatata gcatctgaag cttctttcat agaaataatt
    19321 cgacaattca tcaataaacc atatgatcta aaaactctat cctcaagtgc aatatgaaat
    19381 ttttgcttta atgtagttct agcaacacgc tcttgcatga taatttgttc aatgacttgc
    19441 gttaaatctt ccacaatttc tgtttccgtt ttaccgagag ttacttgatt tgagacctgg
    19501 aaaatattac ttgcaggcat gctaccttct ccgtatatac ctcttaccac aaaacctagg
    19561 ctcctaatcg cttcaatcac acttttaatc ctttttgttg tcacgagtcc cggtaaatgc
    19621 accattactg aagcgcgcat accagtcccg atattagtca cacaactcgt caaatatcca
    19681 aactctttat caaaagcata actaagcttc tcttccacat aaccatcaat ttgcaacgct
    19741 gcctctaacg catcaaataa tctcaaaccc ggcgtcatgc actgtatccg caaatgatct
    19801 tcctcattca acataatact cacattttct tcctcattta aaagaaccgc accatattca
    19861 cttttattca tcatataagg actaattaaa tgtttttcca ccaaaagcgc cttttgtaac
    19921 aaagaaattt gattcatttt aatcaaagta aaattatcat caaaaacttc ggcaatatta
    19981 tcaacaatct cttccttctg ctcataaact ggaaactgtt catccttcaa attcctagca
    20041 agcctaatac gtgagcttaa aacaacatca tcgtcatcac cagcattttc taaccaagaa
    20101 ctcagccgcg gttcaaatac attcatttat cctcacctcc agctttcaaa gccttgattt
    20161 catcacggac aacagcagct tcctcaaact cctcattttc aactagctgt gctagctttt
    20221 cttgtaagcg actaatttca ttttgaacac cttccgcacg ttcaacttct gcaggaacct
    20281 taccaacatg ttttttatat ccattttgca ctcgaccaat aatcggtact aactgtgcct
    20341 caaaagccga ataacactcc gggcacccaa ctcgattagt ctttaaaaac tcttcaaaac
    20401 taagatggca attctcacaa acaacctctt tctgcgcatt ttcttctttt tgcaaaagcg
    20461 ttaagaagtc aagagcaacc tcactaaaag tatccatcgc tttaaccaaa tctttttccg
    20521 aagagagagc ttcgtccgta gcacaattct cacataggta caatgactcc actttcccaa
    20581 gctcatttaa ttgttgcaag gcaataactg ctttattttc tccacatctt tgacaaatca
    20641 tcgtcatcac accttaatca tatttcaaag caactaacat cgcctctaaa atcctacttc
    20701 tcaaaatatc tctatcgggt aaaggtaaaa ttaaaacttc cctgtccaat gccgccacca
    20761 ttaatcttgc ttctttcttc gttattactt cttcttcaag caatctcaaa ataacatctt
    20821 cagaaaatga ttgagagacc tttttatcat gaaccattga aatgattgct tctaacaatt
    20881 gaagtttatc attcattttc actttaataa tcctaatata gccaccacca ccacgtttac
    20941 tttcaacgat ataccctcgt tccattgtaa atctagtgtt tattacataa ttaatttgtg
    21001 aaggtacaca ttcaaactta tctgcaattt cacttctttt aatttcgact gcttcacttg
    21061 attccaatac ttgtttcaaa taagcttcta taacatcaga aatgtttttc attataagga
    21121 atctcctttc tgttttttgc aaatcattga ctttgactat ttttgacttt aattatacta
    21181 gatatcccta cctattagca atttatttat cttttacaaa caaaaaaagc cctaaataat
    21241 tagg
//
LOCUS       DABQVC010000025        20939 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.025,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000025 DABQVC010000000
VERSION     DABQVC010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20939
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.025"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            88..173
                     /locus_tag="IBJ56_000660"
     tRNA            88..173
                     /locus_tag="IBJ56_000660"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:122..124,aa:Leu,seq:taa)
     gene            183..256
                     /locus_tag="IBJ56_000661"
     tRNA            183..256
                     /locus_tag="IBJ56_000661"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:217..219,aa:Arg,seq:acg)
     gene            267..340
                     /locus_tag="IBJ56_000662"
     tRNA            267..340
                     /locus_tag="IBJ56_000662"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:301..303,aa:Pro,seq:tgg)
     gene            363..435
                     /locus_tag="IBJ56_000663"
     tRNA            363..435
                     /locus_tag="IBJ56_000663"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:396..398,aa:Ala,seq:tgc)
     gene            478..551
                     /locus_tag="IBJ56_000664"
     tRNA            478..551
                     /locus_tag="IBJ56_000664"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:512..514,aa:Met,seq:cat)
     gene            563..636
                     /locus_tag="IBJ56_000665"
     tRNA            563..636
                     /locus_tag="IBJ56_000665"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:597..599,aa:Ile,seq:cat)
     gene            659..748
                     /locus_tag="IBJ56_000666"
     tRNA            659..748
                     /locus_tag="IBJ56_000666"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:695..697,aa:Ser,seq:tga)
     gene            791..864
                     /locus_tag="IBJ56_000667"
     tRNA            791..864
                     /locus_tag="IBJ56_000667"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:825..827,aa:Met,seq:cat)
     gene            869..944
                     /locus_tag="IBJ56_000668"
     tRNA            869..944
                     /locus_tag="IBJ56_000668"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:902..904,aa:Asp,seq:gtc)
     gene            949..1021
                     /locus_tag="IBJ56_000669"
     tRNA            949..1021
                     /locus_tag="IBJ56_000669"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:982..984,aa:Phe,seq:gaa)
     gene            1050..1122
                     /locus_tag="IBJ56_000670"
     tRNA            1050..1122
                     /locus_tag="IBJ56_000670"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1083..1085,aa:His,seq:gtg)
     gene            1147..1217
                     /locus_tag="IBJ56_000671"
     tRNA            1147..1217
                     /locus_tag="IBJ56_000671"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1179..1181,aa:Gly,seq:tcc)
     gene            1243..1316
                     /locus_tag="IBJ56_000672"
     tRNA            1243..1316
                     /locus_tag="IBJ56_000672"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1277..1279,aa:Ile,seq:gat)
     gene            1323..1395
                     /locus_tag="IBJ56_000673"
     tRNA            1323..1395
                     /locus_tag="IBJ56_000673"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1356..1358,aa:Asn,seq:gtt)
     gene            1430..1520
                     /locus_tag="IBJ56_000674"
     tRNA            1430..1520
                     /locus_tag="IBJ56_000674"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1464..1466,aa:Ser,seq:gct)
     gene            1526..1597
                     /locus_tag="IBJ56_000675"
     tRNA            1526..1597
                     /locus_tag="IBJ56_000675"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1559..1561,aa:Glu,seq:ttc)
     gene            1662..2837
                     /locus_tag="IBJ56_000676"
     CDS             1662..2837
                     /locus_tag="IBJ56_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3416942.1"
                     /translation="MGAKGKFWILTMVVAISGLSQGVLLPLIAIILEEKGISAGINGF
                     HATGIYLGVLLISPFIEAPLHKYGYKPIILVGGGLVAVSILAFPIWFNLYFWFILRLL
                     IGVGDHMLHFSSQTWIGAMSDPSKRGRNMAIYGLFFSLGFAIGPQLVNLAKINANLPF
                     FLSGILVLIAWGLVWFVRNDFVAEKAVIRKISFWGSLKRFSDVFKLAWVAMIPPFLYG
                     ILETGLNATFPVVGLRDGLDTMMIAMVISSFSVGTIIFQVPIGIVSDKFGRGKVLPLL
                     TGAGAVVFMLTAFVKIPVLYVVFFFVLGILLGSLYSLGLSYMTDLTPLELLPAGNILV
                     GMCFSLGSIIGPSATGMMIGIFGNQIFYFVVAGILVLGCLLLVFGARKDALEKKMGN"
     regulatory      2915..3021
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            3128..5425
                     /gene="metE"
                     /locus_tag="IBJ56_000677"
     CDS             3128..5425
                     /gene="metE"
                     /locus_tag="IBJ56_000677"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HAM3416943.1"
                     /translation="MVKAISSNLGYPRLGEKREWKRALEKFWNGTISEKELLAETKIL
                     RLHALKKQQDKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHDGGKVSLNTYFDIAR
                     GKNDAVASEMTKWFNTNYHYIVPELADAEPKVLDNRALYYYEEAKKELGIEGKPVLVG
                     PITYLKLGKGSDAKSFEVLLDKFIPAYVEILKELEAAGAKWVQIDEPYLATSFDKKEI
                     ALFEKVYQAFQTAVPNLKIELQTYFESLDYYEEVVNLPVAAIGIDFVHDHGDSIKALK
                     AHGFPEDKYLAAGVVDGRNVWRSDLDAKLELLTEIANYVADGKLIVQPSNSLLHVPVT
                     KLSEPDLDEVILGGLSFADQKLEEITILTKALTNGAESVAAELEESRAAVTALNESSH
                     RNNLEVQEAIANLKNVRVDRELPFAERIKLQHAWLKLPLFPTTTIGSFPQSPEVRKTR
                     ADWLKGNITDAEYNAFIEKETARWIKIQEDLDIDVLVHGEFERTDMVEYFGQKLAGFQ
                     ATKFGWVQSYGSRAVRPPLIYGDVAFTEEITVKESVYAQSLTKRPVKGMLTAPVTIIN
                     WSFVRDDVPESVVANQVGLALRKEVEALERNGIKVIQVDEPALREGLPLKQARWQKYL
                     DDAVYSFKLTTASVQNDTQIHTHMCYSDFDDIIDTISALDADVISIETSRSHGEIIST
                     FEEVTYDKEIGLGVYDIHSPRVPTVTEIQDNIRRALRAIDAKQFWINPDCGLKTRKEP
                     ETIAALQDMIKATKEVRAEYQVLEK"
     gene            5447..6571
                     /locus_tag="IBJ56_000678"
     CDS             5447..6571
                     /locus_tag="IBJ56_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAM3416944.1"
                     /translation="MAKLKQETIAAQIGNRKCERTGAVNMPVYFSTAYQHADLGVSTG
                     YDYTRTGNPTRDALQEALAELENGTHAFATSSGMSAIQLVFQLFKTGEHIISSQDLYE
                     GTFRYFEQFGAQYNIGFSYWDGAEIADLEKLVRPETKAIFIETPTNPLMQETDIAAVS
                     EWAGAHDLLVIVDNTFYTPILQQPLTLGADIVIHSATKYLGGHNDVLAGAVIVKEERL
                     GNFFFNQLNATGAVLSPFDSWLLIRGLKTLVLRVRQHQANAEKIAAFLESHELVEEVR
                     YPGRGGMISFFIQDAALVSPLLKELELFTFAESLGGVESLITYPTTQTHADIPEELRN
                     SYGLTDKLLRISVGIEASEDLIADLSKALDAVLEGVSARG"
     gene            6564..7736
                     /gene="metC"
                     /locus_tag="IBJ56_000679"
     CDS             6564..7736
                     /gene="metC"
                     /locus_tag="IBJ56_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HAM3416945.1"
                     /translation="MANEYAQDTAVIKASLGIDKETGALNTPIHLSSTFHQHDFDNYH
                     AYDYARSGNPTREKVEQAIAELEGGTNGFAFASGMAAVSAALFTLSKGDHFIIAKDVY
                     GGTFRFVEQVLPRFGITHTFVDTTNIDEVAKAFQANTKLVYLETPSNPLLHVTDIRTV
                     AKLAKANGCYTFVDNTFLTPLIQKPLELGADLVIHSATKFLGGHSDILAGLIVTNNPN
                     LAEAVYFLQNSTGGVLGVQDSWLLLRGLKTLSVRMKAGTETAEKIALFLNAEPDVVAV
                     HYPWLPSHAGYDIQVEQATSGGAVLSFDLGSEEAVRELVTHLELPVFSVSLGAVESIL
                     SYPAKMSHAAVPEEERLAQGITPGLLRFSAGLEDADDLIADLKQALSFIKKGSVAK"
     gene            7733..9586
                     /locus_tag="IBJ56_000680"
     CDS             7733..9586
                     /locus_tag="IBJ56_000680"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HAM3416946.1"
                     /translation="MNLRKDLSEKVLIADGAMGTLLYSYGVDRSFEELNLSHPEDIVA
                     IHKAYIGAGADIIQTNTYGANYIKLARYGLEDEVKRINQAAIRLAKEAARGTGTYIFG
                     TIGGINGAVDARLPAAPLEEIKRSFREQLYCFLLDGVDAILLETYYDLDELKTVLKIL
                     RETTDLPVVANVSMHEPGILQNGKKLPDALEELIALGADVVGINCRLGPYHMARALET
                     VPLYDNAYLAVYPNASLPEMQEGKVIYQSDTDYFEHYGEVFRQEGARIIGGCCGTTPD
                     HIRALRKGLETTKPILEKEVRPILELVPEEVEDVDSGERLLDKVKERLTILVELDPPR
                     TFDTTKFFEGAQALDEAGVDAITISDNSLATPRISNMALASILKHEYGIKPLIHLTTR
                     DHNLVGMHSHVMGFHKLGLHDVLAITGDPTKVGDFPGASSVFDLRSVELVQLIKKFND
                     GISYTGKSLKEKARFHVGAAFNPNVLNLEKAVRLIERKVEYGADYIITQPIYDVNKAI
                     LLKEALQKANIDVPLFIGVMPLLSSRNAEFLHNEVPGIRLTDDVRERMREAEEHGHAN
                     EEGMAIARELVDAICEHFQGIYIITPFLRYDLSIELAKYAQNKQQVQIGSK"
     gene            complement(9620..10558)
                     /locus_tag="IBJ56_000681"
     CDS             complement(9620..10558)
                     /locus_tag="IBJ56_000681"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HAM3416947.1"
                     /translation="MANASKSALTKQTGFQKWWTLLRPHTLVASFVPVFLGTSVAMSY
                     TSFHFTRFIVMLIACFFIQTSANLFNEYFDYKKGQDDEHSVGNGGAIVRNGMRPGFIL
                     FLAIFLYILSILGGVYLSIELNWYVGLLGAICMLVGFLYTGGPYPIAYTPFGEIMAGF
                     FMGGIITFISFYIQAEFISSFIVYVSIPVMVLVGNLLLANSIRDLVPDKKNGRLTLAI
                     LLGRKWATVLFAAAFLFSYVFEIALIFTQDAPWWTLLILLSLPEAIRAVRRFIGKTSP
                     ITMVPAMKSTSKALTIFGITLALAYLLSLLSRNLFM"
     gene            10733..12121
                     /locus_tag="IBJ56_000682"
     CDS             10733..12121
                     /locus_tag="IBJ56_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HAM3416948.1"
                     /translation="MNTKLPLDLFNQAKRSASQDQPALFSWVTELDELVSPVKLFKKA
                     GTAFKGERFFWQNPEMTLTMTGFGVTKQFLAEKKKDAFLGLQEKIEKRLRTSVTNATV
                     DATGPIYFGGFAFDPERDTEKEWQSFKDGLFYLPLFMLTNKDGKSYLTVNLSIYSDDT
                     ESKLEAVFNQWQKIIHQEVNEAEMALLTDFKEIGKDHFLETASEIIDMINHSEDVKKV
                     VLARRMGLRFQRQVDSAIILENMLATQENSYFFLIEKGTGVFFGATPERLLAVNGDEI
                     HSSCVAGSTERGATEEADEALGNALLKDAKNLREHSYVVQMMEETLKPFTTGLSLSSQ
                     PVLLKNRDIQHLYMNITAKKKPDVSMLEMVKALHPTPALGGLPQKMGLAIIRMKEEMD
                     RGFYGAPIGWVDLKGSGEFAVAIRSGLIVDSQGLIYAGCGIVGDSVPKEELQETAVKF
                     QPMLRVLGGIKK"
     gene            12118..13860
                     /gene="menD"
                     /locus_tag="IBJ56_000683"
     CDS             12118..13860
                     /gene="menD"
                     /locus_tag="IBJ56_000683"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HAM3416949.1"
                     /translation="MTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAE
                     HPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLI
                     VLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDI
                     AMKTPRGPVHLNFPLREPLVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTE
                     CTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAF
                     LKEAEIMDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDM
                     IHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAE
                     LRRLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASVVF
                     QPMLLLIGDLSFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLF
                     GTSTELDFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIEVKTNRHENKANHQ
                     ALWVKIADALKALD"
     gene            13862..14689
                     /gene="menH"
                     /locus_tag="IBJ56_000684"
     CDS             13862..14689
                     /gene="menH"
                     /locus_tag="IBJ56_000684"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HAM3416950.1"
                     /translation="MLVNGRHYHLTTAISGEKPALLMLHGFTGTSETFQDSISGLKEH
                     FNIIAPDLLGHGNTASPEEISPYTMENICEDLAGILHQLNISRCFVLGYSMGGRVATA
                     FAATFPKRVRGLILVSSSPGLEQADIRESRVAADNRLADWIEEEGLVPFVDYWENLAL
                     FASQKVLSPEMKRRIRSERLSQNSHGLAMSLRGMGTGKQPSYWNCLANFTFPVLLITG
                     ALDEKFEKIAQEMHQLLPNSTHVSIQEAGHAVYLEQPNSFSSQLNYWLEDILKEEEK"
     gene            14686..15504
                     /gene="menB"
                     /locus_tag="IBJ56_000685"
     CDS             14686..15504
                     /gene="menB"
                     /locus_tag="IBJ56_000685"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HAM3416951.1"
                     /translation="MSFNWQTEKVYEEIKYESYEGIAKITINRPEVHNAFTPKTVTEM
                     IDAFNLARDNSNLGVIILTGEGEKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLI
                     RVIPKPVIAMVAGWSIGGGNVLQLVCDLTIAADNAKFGQTGPNVGSFDAGYGSGYLAR
                     VIGHKKAKEVWFMCRQYTADEALEMGWINTVVPVADLEKETVAWAKEMLQKSPTALRF
                     IKAAFNADTDGLAGIQQLAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP"
     gene            15520..16929
                     /gene="menE"
                     /locus_tag="IBJ56_000686"
     CDS             15520..16929
                     /gene="menE"
                     /locus_tag="IBJ56_000686"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HAM3416952.1"
                     /translation="MDMTNWLQKRVRLSPKETALVFEGKEETFEEISEAVKQLAGKLF
                     ALGIRKDEMVALLGKNDRMTFLLIHALQQLGAVTLFLNNRLTKKEISFQLANAEVKHV
                     IVADSLVDKVATGISYATLAETDYEAPALLETWDLSRAASVMYTSGTTGKPKGVVQTY
                     ENHWWSAVASVLNLGLTEKDSWLCAVPIFHISGLSIMMRSVIYGIPVYLEEHFDEEKI
                     TQLLESGKISTISVVTSMLERLLKIHSGSYHPNVRTVLLGGGPASKAVLEICKQRDIP
                     LVQSFGMTETASQIVTLPPKDALNKIGSSGKALFPAEVKIADDGEILLKGPSITPGYL
                     HNKKATEASFVDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVISEY
                     EGVKEVAVIGKPDDKWGSVPVAFIVAEETFDEAELRLICETNLAGYKIPKQITIVEKL
                     PKTASGKIQRNKLKERHSM"
     gene            complement(16947..17900)
                     /locus_tag="IBJ56_000687"
     CDS             complement(16947..17900)
                     /locus_tag="IBJ56_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HAM3416953.1"
                     /translation="MRKKYLIALTVLFSALLILTGCSDESDKKATKSDQLTVYTTVYP
                     LQYLTEQIGGEYVDVHSIYPPGSDAHSFEPTQKDMMKIADSDLFFYIGLGMEGFVDKA
                     EKTLANEHVSFVPTAEKLDLPKDPDAAEEHDHESEEEHEHGDINPHVWLNPVYMEQMA
                     TVVKDKLIKEMPDQKETFEKNYQAVEKKLKKLDQDFRTVTKEAKQKDFVTAHAAYSYW
                     ETEYGLHQIPIAGVSTSDEPSQKKLKSIVEKIEAEKIPYIMLEQNTNSKIADVIQQET
                     NTKTLTLHNLETLTQKDLDQKRDYLSIMNDNLKALKEGLNY"
     gene            complement(18051..18317)
                     /gene="yidD"
                     /locus_tag="IBJ56_000688"
     CDS             complement(18051..18317)
                     /gene="yidD"
                     /locus_tag="IBJ56_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HAM3416954.1"
                     /translation="MKKILIGGIRLYQKYISRFTPATCRFYPTCSAYGIEAIQTHGAL
                     KGSYLAIRRISKCHPFHKGGLDFVPPKKEKNADSEHSCKAHHHH"
     gene            18391..18864
                     /gene="ytkD"
                     /locus_tag="IBJ56_000689"
     CDS             18391..18864
                     /gene="ytkD"
                     /locus_tag="IBJ56_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase YtkD"
                     /protein_id="HAM3416955.1"
                     /translation="MFIYNDTLGNKVTIYFEAQENNPDDVLIIPKTEDGWLFTEHKIR
                     GLEFPGGKGEPGETNLDAAKRELMEETGAISDELHFVADYLVESEERTFTKRVYAADV
                     ISIESLDDYLETKGPVIILGELSRFILQPAFSFFMRDAGMVQIVQQAERILNDKN"
     gene            18915..19157
                     /locus_tag="IBJ56_000690"
     CDS             18915..19157
                     /locus_tag="IBJ56_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2584 domain-containing protein"
                     /protein_id="HAM3416956.1"
                     /translation="MGMPLEVNTMIVTKGKEKRISDNFFELEKLGYRIYPIDVPIAVR
                     KTKEGETLGEAIPRKLVWENNKTIIKYELIALNSSN"
     gene            19174..20085
                     /locus_tag="IBJ56_000691"
     CDS             19174..20085
                     /locus_tag="IBJ56_000691"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HAM3416957.1"
                     /translation="MKRKVGIIGTGHVGSDVAFSLVTQGICDEIVLIDKIETKAESEA
                     LELRDMASMTNSYTTITSNDWSALGDADVIVMAVGPETLLREDRMEELVETSRSVAEI
                     VPKIIASGFKGIFVNITNPCDVITMLIQKLSGFDHSRVFGTGTSLDTARMRRVVGEAL
                     HINPKSVEGYVLGEHGESQFVAWSTVKIGGVSITDYKTTTQLDLPALKDAVRGGGWNI
                     LMGKGWTSFGIATAAAGIVDAILTDAKQVFPLAVFSEKTNTYIGQPAIIGANGVIDIL
                     EPKLTTDEVANFNASAEVIKTAFQLIE"
     gene            20180..>20939
                     /locus_tag="IBJ56_000692"
     CDS             20180..>20939
                     /locus_tag="IBJ56_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HAM3416958.1"
                     /translation="MKSKFFTGMMIFLLALICLTGMKAEAKSVGDISPDDISPEISDN
                     RFQSAEGKVLPNFEVDMSISDQSNGKLSIDEDFELTSDGDIILIGTVQGQYIQGTPIL
                     NENGQLNKIPNRDQGIIMRVDRTTKKVEWARVVNYEDGNYNSQYAADKWFSSYKSITT
                     NSSKSAFYVGGEVVNYYGDSGGGSTLIVKSIDANGNFQIAHKSYVSYGVPSRSDLTYA
                     YFMDIQMEGNTLIMSASARYAAQGKQFIRYTLEPA"
BASE COUNT         6180 a         3452 c         5041 g         6266 t
ORIGIN      
        1 ggaagtagtt cagtggtaga acatcacctt gccaaggtgg gggtcgcggg ttcgaacccc
       61 gtcttccgct ccatatttta tagcaacgcc ggggtggcgg aactggcaga cgcacaggac
      121 ttaaaatcct gcggatagtg atatccgtac cggttcgatt ccggtcctcg gcacttttat
      181 ttgcgcccat agctcaactg gatagagtac ttgactacga atcaagcggt tagaggttcg
      241 actcctcttg ggcgcacttt attaaacggg aagtagctca gcttggtaga gcacttggtt
      301 tgggaccaag gggtcgcagg ttcgaatcct gtcttcccga tagtttaatc ccttattatt
      361 atggggcctt agctcagctg ggagagcgcc tgctttgcac gcaggaggtc agcggttcga
      421 tcccgctagg ctccacttgc ttcacattta agtagaaaat agttgcctta ttattatggc
      481 ggtgtagctc agctggctag agcattcggt tcatacccga aaggtcgtgg gttcgactcc
      541 ctccgccgct attttcaatc ttggaccttt agctcagttg gttagagcag acggctcata
      601 accgtccggt cgcaggttcg agtcctgcaa ggtccacttg tcactttatt attatcatgg
      661 aggaataccc aagtctggct gaagggatcg gtcttgaaaa ccgacaggcg ggtaataccg
      721 cgcgggggtt cgaatccctc ttcctccgtt tttcacttgt gatatgtgga ctaaaattta
      781 atattattgt cgcggggtgg agcagtctgg tagctcgtcg ggctcataac ccgaaggtcg
      841 taggttcaaa tcctgccccc gcaatagtgg ttccgtggtg taggggttaa catgcctgcc
      901 tgtcacgcag gagatcgcgg gttcaaatcc cgtcgggacc gccattatgg cttggtagct
      961 cagttggtag agcacttgat tgaagctcaa ggtgtcggca gttcgattct gtcccaagcc
     1021 attctttttt taaacatttt tgccttatgg cggatatggc gaagtggtta acgcacctga
     1081 ttgtggttca ggcattcgtg ggttcgattc ccattatccg ccctttgttt ttaaaaatta
     1141 tattatgcgg gtgtagttta gtggtaaaac tacagccttc caagctgttg tcgtgggttc
     1201 gattcccatc acccgctttt taccatgaat atagttttac tggggcctat agctcagctg
     1261 gttagagcgc acgcctgata agcgtgaggt cgatggttcg agtccattta ggcccatttt
     1321 attccacagt agctcagttg gtagagcaat cggctgttaa ccgatcggtc gcaggttcga
     1381 gtcctgcctg tggagttatt ctttcaataa gaataagttt tttatatctg gggaagtact
     1441 caagtggctg aagaggcgcc cctgctaagg gtgtaggtcg ctcgcgcggc gcgagggttc
     1501 aaatccctcc ttctccgcca gatatggccc gttggtcaag cggttaagac accgcccttt
     1561 cacggcggta acacgggttc gaatcccgta cgggtcatcc taaagaacaa tgtcaatttg
     1621 tgacattgtt tttttattta gtaaagtttt ggaggtatct aatgggggct aaagggaagt
     1681 tttggatttt gacgatggtt gttgccattt caggattgtc acagggggtt ttattacctc
     1741 ttattgcgat aatattagaa gagaaaggta taagtgcagg aattaatggg tttcatgcta
     1801 cgggaatcta tttaggagtt ttacttattt ctccatttat tgaggcccca cttcataaat
     1861 atggttataa gccgattatt ttagttgggg gaggactagt tgcggtttcg attttggctt
     1921 ttccaatttg gtttaattta tatttttggt ttatattaag gttgcttatt ggtgtggggg
     1981 atcatatgtt acatttttct tcgcagactt ggattggggc gatgagtgat ccaagtaaac
     2041 gtggccggaa tatggctatt tatgggttgt ttttctcatt aggatttgcg attgggccac
     2101 aattggttaa tttggcaaaa ataaatgcga acttgccttt ctttttatct ggaattttag
     2161 ttttgatagc ttggggactc gtttggtttg ttcgtaatga ctttgttgct gaaaaggctg
     2221 taattcgaaa aatatctttt tggggtagtt tgaaacgttt ttcggatgta tttaaattgg
     2281 cttgggtagc gatgattcca ccgtttttat atggaatttt ggagactgga cttaatgcga
     2341 cttttccggt tgttgggttg cgcgatgggc tcgatacgat gatgatagcg atggttattt
     2401 cttctttttc ggtagggacg attatttttc aggtgcctat tgggattgtt agtgataagt
     2461 ttggacgagg aaaagtttta cctcttttga cgggagcagg agcagttgtt tttatgttga
     2521 cagcatttgt taagatacca gttttatatg tggttttctt ctttgttttg gggattttac
     2581 ttggatcttt atactcgctt ggattatctt atatgacgga tttaacgcca cttgaattgc
     2641 ttccggctgg gaatattttg gttggcatgt gcttcagttt ggggagcatt attgggccga
     2701 gcgcgactgg aatgatgatc gggatttttg gaaatcaaat attttatttt gtagtagccg
     2761 gaatccttgt gcttggctgt ttgttgctag tatttggagc tcggaaagat gcacttgaaa
     2821 agaaaatggg aaattaatga ttgacagttt ttaggtgcaa gtggtatgat gatttcaatc
     2881 caatttaagt gattaaaaaa aactaaataa attactctta ttatgagtgg tagagggact
     2941 ggcccgttga aacccagcaa cctttcaatt cgttgaaaag gtgctaaatc ctgcgaagtg
     3001 tgatgcttcg agagataaga gagacttaaa aagtttcact gtatttgtgt atcgaaactt
     3061 ccaaacctct ctagttctct agggaggttt tttattggca aaaaatggag aggataaggt
     3121 gataagtatg gtaaaggcaa ttagttcaaa cttggggtat ccgagacttg gagagaaacg
     3181 tgaatggaaa cgtgcactag aaaagttttg gaatggcaca atttcagaaa aggaattatt
     3241 ggcggaaaca aagattctaa gattacatgc gctaaaaaaa caacaagata aagggattga
     3301 tttgattcca gttggtgact ttagttttta tgatcaagtg cttgatacga gtgttacatt
     3361 tgggattatt ccaaaacgtt ttcagcatga tggagggaaa gtttcgctaa atacatattt
     3421 tgatattgca cgtggtaaaa atgacgcggt ggcctctgaa atgactaaat ggtttaatac
     3481 gaactatcac tatattgttc cagaactcgc tgatgcggag ccgaaagtgt tggataatcg
     3541 ggcactatac tattacgaag aagcgaagaa agagcttggt attgaaggaa aaccagtgct
     3601 tgttgggcca attacttatt taaaacttgg aaaaggtagc gatgcaaaaa gttttgaagt
     3661 attgttagat aaatttattc cggcgtatgt agagattttg aaagaacttg aggcagctgg
     3721 tgccaagtgg gtgcaaattg acgagccata tcttgcaact agttttgata aaaaagaaat
     3781 tgcgttattt gaaaaagtat atcaagcgtt tcaaacggca gttccaaatt tgaaaataga
     3841 gttacaaact tattttgaaa gtttggatta ttatgaagag gttgttaatt taccagttgc
     3901 ggcgattggg attgactttg ttcatgatca tggtgattcg ataaaagcgt taaaagctca
     3961 cggatttccg gaagataagt atttagcggc cggtgtggtg gatggacgga atgtttggcg
     4021 tagtgacttg gatgctaaac tggaactact tacggagatt gcgaattatg tggcggatgg
     4081 aaaattgatt gttcaacctt ctaattcatt gctccatgta ccagtgacga agttaagtga
     4141 gccagatttg gatgaagtga ttcttggtgg cttatcattt gctgatcaaa aattagagga
     4201 gattactatt ttgacgaagg ctttgacgaa tggtgcggaa agtgtggcag ctgaactaga
     4261 agaatctcgt gcagcagtga cggcgctcaa tgaatctagc catcgaaata atttagaagt
     4321 tcaagaagcg attgctaatt tgaaaaatgt gcgggtggac cgggagttgc catttgcgga
     4381 acggattaag ttgcaacatg cttggttgaa attaccgctt ttcccaacga caacaatcgg
     4441 aagttttcca caatcaccgg aagttcggaa gacgcgcgct gactggttaa aagggaacat
     4501 aaccgatgca gaatataatg cttttattga aaaagaaacg gctcgctgga ttaaaattca
     4561 agaggatttg gatattgatg tattagttca cggggaattt gaacggacag atatggtgga
     4621 atatttcggg caaaaattgg ctggtttcca agcaactaaa tttggatggg tacagtctta
     4681 tggttcgaga gcggttcgtc caccacttat ctacggggat gttgctttta cagaggaaat
     4741 taccgtgaaa gaaagtgtct atgcccagtc gttaacgaag cgcccagtga agggaatgct
     4801 aacggcgccg gtgacaatta ttaattggag ttttgttcgt gatgatgtgc cggagagtgt
     4861 agttgcaaat caggttggac ttgcgcttcg taaagaagta gaagcgttag aacgtaatgg
     4921 cattaaagtt atccaagtgg atgagccagc tttacgtgaa ggtttaccat taaaacaagc
     4981 aagatggcaa aaatatttag atgatgcagt ttattcgttt aaattaacga ctgcttcggt
     5041 ccaaaatgat acgcaaattc atacgcatat gtgttattcg gactttgacg atattattga
     5101 tacgattagt gctctagatg cggatgttat ttcgattgaa acgtcaagaa gtcacgggga
     5161 gataatttcg acatttgagg aagtgacgta tgataaggaa attggccttg gggtttatga
     5221 tattcatagt ccacgcgttc cgactgtgac tgaaatccaa gacaatattc gccgagcgtt
     5281 acgtgcaatt gatgcaaaac aattttggat taacccagat tgtgggttga aaacgcgtaa
     5341 agagcctgaa acgattgcgg cacttcaaga tatgattaaa gcgactaaag aagttcgtgc
     5401 ggaatatcaa gtattagaga aataaaggaa tggaggagag gtaattatgg caaagctgaa
     5461 acaagagacg atagcagcgc aaattggaaa tagaaaatgt gaaagaacgg gtgctgtcaa
     5521 tatgccagtc tacttctcta cagcttacca gcatgccgat cttggagtgt caacggggta
     5581 tgattatact agaactggaa atccgacgcg agatgcttta caggaagcgc tcgcggaact
     5641 agaaaatgga acgcatgctt ttgcaacgag ttcagggatg agtgcgattc aacttgtttt
     5701 ccagcttttt aaaactggcg aacatattat tagttcacag gatttgtacg aggggacttt
     5761 tagatatttt gaacagtttg gtgcgcaata taatattgga ttttcgtatt gggacggggc
     5821 ggagattgct gatttggaga aattagttcg tccggaaacg aaggcgattt ttattgagac
     5881 accaacaaat cctttaatgc aggaaacaga tattgcggct gtgtctgaat gggcaggtgc
     5941 gcatgattta cttgtgattg tggataatac attttataca ccaattttac aacagccgtt
     6001 aactttgggc gcggatattg tgattcatag tgcgacgaag tatcttggtg ggcataatga
     6061 tgtgcttgct ggggcggtta ttgtaaaaga ggagcgactt gggaatttct tttttaatca
     6121 gttaaatgcg acgggtgcag tgctatcgcc atttgatagt tggttattga ttcgtggcct
     6181 taagacgctg gttttgcgtg taagacaaca tcaagcgaat gcagagaaaa tcgcggcgtt
     6241 tttggaatca catgaattgg tggaggaagt tcgttatcca gggcgcggtg ggatgattag
     6301 tttctttatt caagatgcgg cgctcgtatc gccacttttg aaagaacttg agttatttac
     6361 ttttgcggaa agtttaggcg gggtggagag tttgattact tatccaacaa cacaaacgca
     6421 cgcagatatt cctgaagagt tgcggaattc ttatggactt acagacaaat tattgcgcat
     6481 ttcggttgga attgaagcta gtgaagattt gattgctgat ttatctaagg cactcgatgc
     6541 ggttttggaa ggggtgagcg ctcgtggcta atgaatatgc gcaagatacg gctgtgatta
     6601 aagcgagcct cgggattgat aaagagacag gtgcgcttaa tacgccaatt catttatcgt
     6661 ctactttcca tcagcatgac tttgataatt atcacgctta tgattatgcg agaagtggga
     6721 acccaacgag agaaaaagtg gaacaagcga ttgcggaact ggaaggtggt acgaatggtt
     6781 ttgcctttgc tagtggaatg gcggctgttt ctgcagcgct ctttactctt tctaagggag
     6841 accattttat cattgcgaaa gatgtgtacg gcgggacgtt tcgttttgtg gagcaagtgt
     6901 tgccgcgttt tgggattacg catacttttg ttgatacgac aaatattgac gaagttgcga
     6961 aggcatttca agcgaatacg aaactggttt acttggaaac accttctaat ccgttgctgc
     7021 atgtgacaga tattcggact gttgcaaaac ttgcgaaagc gaatgggtgt tatacgtttg
     7081 ttgataatac atttttgacg ccgttaattc aaaaaccgtt agaattaggt gcagacttgg
     7141 ttattcatag tgcgacgaaa tttcttggag ggcatagtga tattttggcg gggctaattg
     7201 tcaccaataa tcctaatctg gctgaagcag tgtacttttt gcaaaattcg actggtgggg
     7261 ttcttggagt gcaggattcg tggttgttat tgcgcggact aaaaacactt tctgtgcgga
     7321 tgaaggctgg gacggaaaca gcggagaaaa ttgcgctatt tttaaatgcg gagccagatg
     7381 tggtggcagt gcattatccg tggttacctt ctcatgcggg ttatgacatt caagtggaac
     7441 aggcgacaag tggcggggcc gttttatcgt ttgatttagg cagtgaggaa gctgtgcgag
     7501 aactagtaac acatttggaa ttgccggtat tttctgtgag tttgggcgcg gtggagagta
     7561 ttctttctta cccggctaaa atgtctcatg cggctgttcc ggaagaggag cgtttggcgc
     7621 aaggaattac gccaggatta ttacgttttt cagctggact agaagatgcc gatgacttga
     7681 ttgctgattt aaaacaagca ctttctttca ttaagaaggg aagtgttgcg aaatgaattt
     7741 aagaaaagat ttaagtgaaa aagtattaat tgctgacggc gcgatgggca ctttgcttta
     7801 ttcttatgga gtggatcgtt cgtttgaaga gctaaatttg tctcatccgg aagatattgt
     7861 tgcgattcat aaagcatata ttggtgctgg ggcggatatt attcaaacga atacgtatgg
     7921 tgcaaattat attaaattag cgcgatatgg tttagaagat gaagtgaagc gtattaatca
     7981 agcagccatt cggttagcaa aggaagcggc aagagggact ggaacgtata tttttgggac
     8041 gattggtgga ataaatggcg cagtggatgc aagacttcca gcggctccac tcgaagaaat
     8101 caagcgaagt tttagggagc agctatactg ttttttgtta gatggtgtgg atgcgatttt
     8161 gctggaaacg tattatgatt tagatgagct taaaacagtg ttgaaaattc ttcgtgagac
     8221 tactgattta ccggtagttg cgaatgtctc tatgcatgag ccgggtattc ttcaaaacgg
     8281 gaaaaaattg ccggatgcgc tggaagaact tattgcgctt ggagcggatg tagttggtat
     8341 taattgccga cttggtcctt accatatggc gcgtgctctt gaaacagtgc cgttgtatga
     8401 taatgcttat ttggcagttt atcccaatgc tagtttgcca gagatgcaag aaggaaaagt
     8461 gatttatcag tctgacacgg attattttga acattatggg gaggtttttc ggcaagaagg
     8521 tgctcggatt attggtggtt gttgtggcac gacgccagat catattcgtg ctttacgaaa
     8581 aggccttgaa acaacaaaac ccattttgga aaaagaagtt cggccgatat tggaacttgt
     8641 tccagaagaa gtggaggatg tggattctgg tgaacgtttg cttgataaag tgaaggaacg
     8701 tttaacgatt ttggttgaac tagatccgcc gaggactttt gatacgacga aattttttga
     8761 aggagcccag gcacttgacg aggcaggcgt tgatgcgatt acgatttcgg ataattcgct
     8821 tgccacgccg cggattagta atatggcgct agcttcgatt ttgaagcatg aatatggtat
     8881 taaaccactc attcatttga cgacgcggga tcataatttg gttgggatgc attcgcatgt
     8941 gatgggattt cataaattgg ggctgcatga tgtgcttgcg attacaggtg atccaactaa
     9001 agtaggtgat ttccctggag cgtcttcggt gtttgattta aggtctgtgg aattagttca
     9061 gctaattaaa aagttcaatg atgggatttc ttatactggg aaatcactga aagaaaaggc
     9121 acgattccat gttggagcgg catttaatcc gaatgtgctg aacttagaga aagcggttag
     9181 gttaattgag cgaaaagtgg aatatggtgc cgattatatt attacacagc caatttatga
     9241 tgtgaataaa gctatcttat taaaagaagc cttgcaaaaa gcaaatattg atgtgccact
     9301 ttttattggg gttatgccat tattgtctag tcggaatgcg gaatttctgc ataatgaggt
     9361 tcccgggatt cgtttgacag atgatgtgcg ggagcgaatg agagaggcgg aagagcacgg
     9421 tcatgcaaat gaagaaggca tggcaattgc tcgtgaatta gtggatgcga tttgtgagca
     9481 tttccaaggg atttatatta ttacgccatt tttacgatat gatttatcga tagaattagc
     9541 gaaatatgcc caaaataaac agcaagtcca aattgggtct aaataaaaaa actggttgtc
     9601 acgaggacaa ccagtttttt tacatgaata aatttctgga taatagactt aaaaggtaag
     9661 caagggccaa tgtaatacca aagatagtta atgctttaga tgtggatttc atggctggga
     9721 ccattgtaat cggcgaagtt ttgccgatga aacgacgcac ggcgcgaata gcttctggca
     9781 aactaagtaa aatcagaagc gtccaccacg gagcatcttg tgtgaaaata agggcgattt
     9841 caaatacgta actgaataga aaagcagctg caaaaagaac ggttgcccat ttgcgaccta
     9901 gcaagatagc taaggttaaa cgaccatttt tcttatcagg tactaaatca cgaatactat
     9961 tagcaagtag caagttacca acgagcacca ttactggaat cgatacgtat acgataaacg
    10021 aactaataaa ttctgcttga atatagaagg aaatgaaagt aataattccc cccataaaga
    10081 atcctgccat aatttcacca aatggcgtat aagcaatagg ataaggtcct cccgtataaa
    10141 gaaagccaac aagcatacat attgcgccaa gtaatcctac ataccaatta agttcaatgg
    10201 ataaataaac accaccgaga attgataata tgtataagaa aattgctagg aataaaataa
    10261 atcctgggcg cataccattt cggacgatag caccaccatt tcctaccgag tgctcatcat
    10321 cttgcccttt tttataatca aaatattcat tgaatagatt ggcggatgtt tgtataaaga
    10381 aacaagcaat tagcataacg ataaaacgtg taaaatgaaa actggtgtag ctcattgcga
    10441 ctgatgttcc aagaaatact ggaacgaaag aggctacaag tgtatggggg cgaagtaatg
    10501 tccaccattt ttgaaatcca gtttgttttg taagtgcaga ttttgaggca ttagccatgt
    10561 ttttctctcc tttttcactt ccatatgttt cagatgtcta cccttcattt tagggaaata
    10621 ttgcaagaac gtcaataatt aataacgaaa tgaaagaaaa aacgcaaacc aagcagttta
    10681 gctctatttt tggtataata gaagatgtga atgtaaaagg agagataagc atatgaatac
    10741 taaattgcct cttgatttat ttaatcaagc gaaacgtagc gcaagccaag atcaaccggc
    10801 tctatttagc tgggtaactg agttagatga attagtgtct ccagtcaaat tgtttaaaaa
    10861 agctggcacg gcttttaaag gtgagcgttt tttctggcaa aatccagaaa tgacactgac
    10921 catgaccggt tttggtgtaa cgaaacaatt tttggcggag aagaaaaaag atgcttttct
    10981 tggactgcaa gagaaaattg agaagagact gcgaactagt gtaaccaatg caaccgtaga
    11041 tgctactgga ccaatttact ttggtggttt tgcctttgat cctgagcgtg atacagagaa
    11101 agaatggcaa agttttaaag atggcttgtt ttatttacca ctatttatgt taacgaataa
    11161 agatggtaaa agttacttaa ccgttaattt gtctatctac tctgatgata cggaaagcaa
    11221 attagaagct gtttttaatc aatggcaaaa aatcattcat caagaggtta atgaagctga
    11281 aatggcatta cttacagatt ttaaggagat tggcaaagac catttcctag aaactgcgag
    11341 tgaaattatc gatatgatta atcattcaga agacgtaaaa aaagtggttc tagctagacg
    11401 aatgggcttg cgtttccagc gccaagtaga tagtgccatt attttggaaa atatgctagc
    11461 aacacaagaa aatagttatt tcttccttat tgaaaaggga acaggggtct ttttcggggc
    11521 aactcctgaa agattacttg cggtcaatgg ggatgaaatt cattcgtcat gtgtagctgg
    11581 ttctacggag cgcggcgcta ccgaagaagc ggacgaagca cttggaaatg cgctgttaaa
    11641 agatgcgaaa aacttgcgag agcattctta tgtagtgcaa atgatggaag aaacattaaa
    11701 accatttaca acaggattgt cgttatctag ccaaccagta cttctgaaaa atcgtgatat
    11761 tcaacatcta tatatgaata ttaccgcgaa gaaaaaacca gatgtttcca tgcttgaaat
    11821 ggtaaaagct cttcatccaa cgccagctct tggcggttta cctcaaaaaa tgggattagc
    11881 cattattcgg atgaaagaag aaatggatcg tggtttctac ggagcaccga ttggctgggt
    11941 tgacttaaaa ggttctggtg agtttgctgt ggccattcgt tcaggcttaa ttgtcgattc
    12001 gcaggggtta atctatgctg gttgcgggat tgttggagat tctgtaccaa aagaagaatt
    12061 acaagaaacg gcagtaaaat tccagccgat gttacgcgta ttaggaggca taaagaaatg
    12121 acaaaccacg aacaagtgct gacagattat ttagctgcat ttattgagga gcttgtgcaa
    12181 gccggtgtga aagaagcaat tattagcccg ggttcacgtt ccactccgct tgcactgatg
    12241 atggcagagc atccgatttt gaagatttat gtggatgttg acgaacgctc ggctggcttt
    12301 tttgctttag gtctagcgaa agcatcgaaa cgtccagttg ttctactttg tacttcagga
    12361 acggcagctg caaactattt tccagcagtt gctgaagcta atttatcaca aatcccattg
    12421 attgttttaa ctgctgatcg tccacatgag cttcgaaatg ttggagcacc acaagcgatg
    12481 gatcagttgc atttatatgg ttcacatgtc aaggatttta cggatatggc acttcctgaa
    12541 aacagtgaag aaatgcttcg ctatgcaaaa tggcatggaa gtcgcgcggt ggatattgca
    12601 atgaaaactc cacgtggccc tgtgcacctc aatttcccat tacgcgaacc gcttgtgcca
    12661 attctagaac cttcaccgtt cacagctacc ggaaaaaaac atcatcacgt acatatttat
    12721 tatacgcatg aagtattgga cgatagctcg attcaaaaaa tggtgacaga atgcactggt
    12781 aaaaaaggcg tattcgtcgt tggtccaatc gataagaaag aattggagca gccaatggtt
    12841 gatttagcga aaaaactagg ttggccgatt ttagctgatc cgctttctgg actccgttct
    12901 tacggggcgc tagatgaagt agtgattgac caatatgatg cattcttaaa agaagcagag
    12961 attatggata aattaacacc agaagtagtt attcgttttg gaagtatgcc agtttctaaa
    13021 ccactgaaaa actggttaga acaactttca gatattcgtt tttatgtggt ggatccgggt
    13081 gctgcttgga aagatccgat taaagcggta acagacatga ttcactgtga tgaacgattt
    13141 ttactagata tcatgcaaca aaatatgcct gatgatgcga aagatgcagc gtggttaaat
    13201 ggatggacat cgtataataa agtggcacga gaaatcgttt tggctgaaat ggcgaacaca
    13261 accattttgg aagaaggtaa gatagttgcg gaattacgcc gtttgttacc ggacaaagcg
    13321 ggactcttta ttggtaatag tatgccgatt cgcgatgttg acacgtactt ttcacaaatt
    13381 gataagaaaa taaaaatgct agcaaatcgc ggggctaatg gtattgacgg agttgtttct
    13441 tcggcgttag gtgctagtgt tgtcttccaa ccaatgcttt tactaattgg tgatttatcc
    13501 ttttatcatg atatgaacgg gttacttatg gcgaaaaaat ataagatgaa cctaacgatt
    13561 gtgattgtta ataatgatgg cggcgggata ttctcgttct tacctcaagc aaacgagccg
    13621 aagtattttg aatcattatt tggtacatct actgaacttg atttccgttt tgcagctgct
    13681 ttttatgatg cagattatca cgaggctaag tcggtagatg aactagaaga agcaatcgat
    13741 aaagctagct accataaagg tttggatatt attgaagtga aaacaaatcg tcatgaaaat
    13801 aaagcaaatc atcaagcact ttgggttaaa attgcggacg cgttaaaggc attagattaa
    13861 tatgctagta aacggtcgac attatcatct gacaactgct ataagtggag aaaagccagc
    13921 tttactgatg ttacatggtt ttactggaac aagcgaaaca tttcaagata gtatttcagg
    13981 tttgaaagaa cattttaata ttattgcgcc agatttactt gggcacggaa ataccgcaag
    14041 cccagaagaa atatcgcctt acactatgga aaatatttgc gaggatttag ctggaatttt
    14101 acatcaatta aatatcagta gatgttttgt acttggctat tcgatgggcg ggcgggtcgc
    14161 gactgcgttt gcagcaacct ttccaaaaag ggtgcgtgga cttattttag ttagtagctc
    14221 tcctggcctt gaacaagcag atatccgaga aagccgtgtt gcggctgata atcgtttggc
    14281 agactggatt gaagaagagg gcttggtgcc ttttgtggac tactgggaaa atttagcttt
    14341 gtttgcttca caaaaagttt tgtctcctga aatgaaaaga agaattaggt cagaacggct
    14401 atcgcaaaac tcgcatggtt tagcaatgag tctacgtggg atggggaccg gaaaacaacc
    14461 atcttactgg aactgtttag cgaactttac ttttccagtg ctactcatta ccggtgcttt
    14521 agatgagaag tttgaaaaaa tcgcgcagga aatgcatcaa cttttaccaa atagtacgca
    14581 tgtttcaatt caagaagcgg ggcatgcagt ttatttagaa caaccaaaca gcttttcaag
    14641 tcagcttaat tactggctgg aagatatttt gaaggaggaa gaaaaatgag ttttaattgg
    14701 caaacagaaa aagtatatga ggaaatcaaa tatgaaagtt acgaaggaat cgcgaaaatt
    14761 acgattaatc gtccagaagt acataatgca tttacaccaa aaacagtaac agagatgatt
    14821 gatgcattta acttagcgcg tgataattcg aatcttggcg tgattatttt aacaggggaa
    14881 ggcgaaaaag ctttctgttc tggcggagac caaaaagttc gcggtcatgg tgggtatgtt
    14941 ggcgatgacc aaatcccacg tttgaatgtt cttgatttac aacgtttaat tcgtgttatt
    15001 ccaaagccag ttattgcgat ggttgcgggc tggtccattg gtggaggtaa tgttcttcaa
    15061 ttggtatgtg acttaacaat tgcagcagat aatgcaaaat ttggtcaaac aggaccgaat
    15121 gttggtagct ttgatgctgg ttatggttct ggctatttag cacgtgttat tggacataag
    15181 aaagcgaaag aagtttggtt tatgtgccgt caatatacag cggatgaagc gctagaaatg
    15241 ggctggatta acactgttgt tccagtagca gatttagaaa aagaaacagt agcttgggca
    15301 aaagaaatgc tacaaaaaag tccaactgcc ttgcgtttca tcaaagcagc tttcaatgca
    15361 gatacagatg gtttagcggg tattcagcaa ttagctggtg acgcaacact tctatattac
    15421 acaaccgatg aagccaaaga aggtcgcgat gcctttaaag aaaaacgtga tccagacttt
    15481 gaccaatttc caaaattccc ttgatttgaa ggtgtaaaaa tggacatgac aaactggctt
    15541 caaaaacgag tgcggctttc tcctaaagag accgcactcg tttttgaagg aaaagaagaa
    15601 acatttgaag aaataagtga agcagtaaaa caacttgcgg gtaagttatt cgcgttaggg
    15661 attagaaaag acgagatggt tgctttgcta gggaaaaatg atcggatgac ttttttactc
    15721 attcatgctc tgcaacaact tggtgcggtc actttatttc tgaataatcg tttgacgaaa
    15781 aaagagatat cgtttcaact cgcgaacgct gaggtaaaac atgtgattgt agcggattcg
    15841 ttagtagata aggtagccac tggaattagt tatgctactt tggcagaaac ggattatgaa
    15901 gcgccagcgt tgttagaaac atgggactta tctcgcgcgg cttctgttat gtatacatca
    15961 gggacaacag ggaaaccaaa aggtgttgtg caaacttacg aaaatcactg gtggagtgct
    16021 gttgcttcgg tgctgaattt aggtttaacc gagaaagata gctggctctg tgctgtgccg
    16081 atttttcata ttagtggttt atcgattatg atgcgttcgg ttatttacgg aattcccgta
    16141 tatttggaag agcatttcga tgaagaaaaa attacgcaat tgcttgaaag tggtaaaatt
    16201 tctacgattt cggtcgtgac ttctatgctg gaacgcttgt tgaaaataca cagcggaagt
    16261 tatcatccca atgttcgaac cgttttactg ggcggcgggc ctgctagtaa agctgttttg
    16321 gaaatttgca aacagcgtga tattccctta gtgcagtcat tcgggatgac agaaacagct
    16381 tcacaaatcg ttactttacc accaaaagat gccttaaata aaattggttc ttcaggtaaa
    16441 gcgttatttc cagcagaagt gaaaattgcg gatgacggag aaattttact aaaaggacca
    16501 tcgattacac ctggatattt acataataaa aaagcgacag aagcttcgtt tgtggatggt
    16561 tggttcaaaa ctggtgatat tggctatttg gatgaagaag gctttttatt tgtgttagag
    16621 cgtcgttctg atttgattat ttcgggagga gagaacattt atcctactga aatagaacat
    16681 gtcatttccg agtatgaggg cgtgaaagaa gtggctgtta tcggtaagcc tgacgataaa
    16741 tggggtagtg ttcccgtcgc ttttatcgtt gcagaagaaa catttgatga agctgaatta
    16801 cggcttatct gtgaaacaaa tttggctggt tataaaatcc ctaaacaaat aacgattgtc
    16861 gaaaagctac ctaaaacagc atctggaaaa attcaacgca ataaattaaa agaaaggcac
    16921 tctatgtaaa cagagcgcct ttctttttaa taattaagac cttcttttaa tgcttttaaa
    16981 ttatcgttca taatggaaag ataatcacgt ttttgatcta agtctttttg cgtaagtgtt
    17041 tctaaattgt ggagtgtcag tgtttttgta tttgtttctt gttgaataac atctgctatt
    17101 tttgagttag tgttttgttc taacataata tatgggattt tctctgcttc gattttttca
    17161 acgatagatt ttaatttctt ttgagaaggt tcatcacttg ttgatacacc ggcaatagga
    17221 atttggtgca gaccatattc tgtttcccag tagctatagg ctgcatgtgc tgtcacgaag
    17281 tctttttgtt ttgcttcctt tgtaactgtg cggaaatctt gatctagctt tttcaatttt
    17341 ttttcgacag cctggtaatt tttttcgaaa gtttcttttt gatcgggcat ttctttgatt
    17401 aatttatctt ttacaactgt tgccatttgt tccatgtata caggatttaa ccatacgtgc
    17461 gggttaatgt cgccatgttc gtgttcttct tcgctttcgt ggtcatgttc ttctgcggca
    17521 tctggatctt ttggcaagtc taatttttca gcggtaggga cgaaagagac atgttcattc
    17581 gcgagtgttt tttccgcttt gtccacaaat ccttccatac ccagtccgat atagaagaat
    17641 aaatcactat cggcaatttt catcatatct ttttgggtgg gttcgaagct atgggcgtca
    17701 gaacctggtg ggtaaatgct atgaacatct acatactcac cgccgatttg ttctgttaaa
    17761 tactgcaaag ggtaaacggt tgtataaact gttaattgat cactctttgt cgctttttta
    17821 tcgctctcat ctgagcagcc agtaagtatg agtaatgctg aaaatagtac agttaaggca
    17881 ataagatact tttttctcaa tcttttcact cctctaaatc gaaaataatt cttgtttaaa
    17941 taatatacga atcgtagcaa ttacgattta tagtccgaat ttgataatac cttattctgt
    18001 cttaaaaagc aagaaaaaaa tgaaccggca aaaaccgatt catgatatga ttaatggtga
    18061 tggtgagctt tacaggaatg ctcggaatca gcattcttct cttttttggg tggcacaaaa
    18121 tctagtccgc ctttatgaaa cgggtggcat ttagaaatac gtctaatcgc aaggtaacta
    18181 ccttttaaag cgccatgtgt ctgtatcgct tcgattccat aggcagaaca agttggataa
    18241 aaacgacaag tagccggagt gaaacgcgaa atatattttt gataaagtcg gattcctccg
    18301 ataagaattt ttttcattga ttttcaccct ctaaatttca gcttacatac agcttaccac
    18361 atttttgaaa aaagaaaagg aagtgagttt ttgtttattt ataatgatac acttggaaac
    18421 aaagttacaa tctattttga agcacaggaa aataatccag acgatgtgct cattatacct
    18481 aaaacagagg acggttggct ttttaccgaa cacaaaattc gtgggcttga attccctggt
    18541 ggaaaaggtg aaccaggaga aacaaattta gacgcagcga aacgcgagct catggaagag
    18601 acgggcgcaa ttagtgatga acttcatttt gtagctgatt atttggtcga atcagaggaa
    18661 cgaacgttta ctaaacgagt ttatgcggcg gatgttattt ccattgaatc actagatgat
    18721 taccttgaaa caaaaggccc tgtcatcatt ctaggggagt taagtcgatt cattttacaa
    18781 ccggctttta gcttttttat gcgagatgcg ggaatggtcc aaattgtgca acaagctgag
    18841 cgaatcttaa atgataaaaa ctagtcaaat aggggcaatc tctgctatga ttaaagaaac
    18901 tggaggtggg aaaattgggt atgccactag aggtaaacac aatgattgta acaaaaggaa
    18961 aagaaaagcg aatttctgat aatttctttg aactagaaaa attaggttat cggatttatc
    19021 caattgatgt gccaatcgca gtacgtaaaa caaaagaagg cgaaacactt ggagaagcaa
    19081 tccctcgtaa actcgtgtgg gaaaataata aaactatcat taaatatgaa ttaatcgcat
    19141 taaattcaag taattaattg tggaggggat tttttgaaac ggaaggttgg aataattggt
    19201 actggtcatg ttgggagcga cgtggctttt tccctcgtaa ctcaagggat ttgtgatgaa
    19261 attgtgttaa tagataaaat cgaaactaaa gcagaaagtg aagcgttaga actgcgcgat
    19321 atggcttcga tgacgaattc gtatactaca ataacttcga atgactggag cgcactaggt
    19381 gatgccgatg tcattgtcat ggctgttggt ccagaaacgt tactgcgcga ggatcgtatg
    19441 gaagagctcg ttgaaacaag tcggtcagtg gctgagattg taccaaaaat tatcgcatcg
    19501 gggtttaaag ggatttttgt gaatattacg aatccatgtg atgtgattac gatgcttatt
    19561 cagaaattat ctgggtttga tcattcacga gtatttggga cgggaacatc acttgataca
    19621 gcaagaatga gacgagtagt aggagaagca ttacatatta atccaaagag tgtggaagga
    19681 tacgttcttg gcgagcatgg tgaatcacaa ttcgttgctt ggtctacggt gaaaattggc
    19741 ggggtaagca tcacggatta taaaacaaca acacaacttg atttaccagc attaaaagat
    19801 gcagttcgtg gtggtggttg gaatatttta atgggcaaag gctggacgag ttttggaata
    19861 gccacagctg cagcggggat tgtcgatgcg attttaacag atgctaaaca agtttttcca
    19921 ttagctgtat tttccgaaaa aacaaatacg tacatcggac aaccagcaat cattggtgca
    19981 aatggcgtga tagatatttt agaaccgaaa ctaactacag atgaagtggc taattttaat
    20041 gcatcagctg aagttattaa aacagctttt cagttaattg aataattagt ttgccatgga
    20101 gaaaataggg gaataaaatg gcaatagctt ttgaaatggg gaaaacaaat gggggtttat
    20161 aaaagggaga tggggatgaa tgaaaagtaa attttttaca ggtatgatga tttttttgct
    20221 agcattaatt tgtcttactg gaatgaaagc agaagcaaaa tcggtgggag atatttctcc
    20281 agatgatatt tcaccggaaa tttcggataa tcgctttcaa tctgcagaag ggaaagtttt
    20341 gcctaatttt gaggtagaca tgtcaattag tgatcaaagt aacgggaaat tatcgattga
    20401 tgaggatttt gaattaacct cagatggtga tattattttg attggaacag tgcaaggtca
    20461 gtacatacaa ggaaccccca ttttaaatga aaatgggcaa ttaaataaaa ttccaaaccg
    20521 tgatcaaggg attataatgc gtgtcgatcg aaccacaaaa aaagtggagt gggcacgtgt
    20581 tgttaactat gaggacggta attacaattc acaatatgca gctgacaaat ggtttagttc
    20641 gtataaatcg attacaacca actcgagtaa atctgccttt tatgttggcg gggaagtagt
    20701 caattattac ggtgattctg gtggtggtag tacattaatt gtaaaatcaa ttgatgcaaa
    20761 tggtaacttt caaatagccc ataaatcata cgttagttac ggtgttccat caagatcaga
    20821 tctaacctat gcctatttta tggatattca aatggaaggt aacacattaa tcatgtcagc
    20881 ttcagctagg tatgctgctc aagggaaaca gtttattcgg tatactttag aaccagctt
//
LOCUS       DABQVC010000026        20733 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.026,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000026 DABQVC010000000
VERSION     DABQVC010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20733
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.026"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            1..335
                     /locus_tag="IBJ56_000693"
                     /pseudo
     CDS             1..335
                     /locus_tag="IBJ56_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466365.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
     gene            complement(379..451)
                     /locus_tag="IBJ56_000694"
     tRNA            complement(379..451)
                     /locus_tag="IBJ56_000694"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(416..418),aa:Val,seq:gac)
     gene            complement(472..1497)
                     /locus_tag="IBJ56_000695"
     CDS             complement(472..1497)
                     /locus_tag="IBJ56_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HAM3416959.1"
                     /translation="MASTIYDIAKHAGVSKSTVSRVLNNQANISEESRKKVLEAIDEL
                     NYQPSKLARALTSSGFDAIMVISNRSTTTTTGNPFFSEIIQSISTQAELENFDLILQT
                     AKNSEDELKKCLSKIQEKMIKGIIMLSSPADEDFFHQLDPYNIPIVVTGKVEGHYKNI
                     YSVDTDNFGDSYALTKHLIKQGHQKIACIHAPLDYHVSIDRLAGFRSCLFDHQLDLRN
                     DWIIDSGYSIEDSYKAALRLMEGPDKPTAVFATDDLKVLSIYKMAADKNLQIPADFSV
                     IGYNDKVASSFLSPPLTSIDIPINKLGKKATNLLFRLIHQDKNVPKTTIIKTEMIERE
                     SIQKINV"
     gene            1724..3424
                     /locus_tag="IBJ56_000696"
     CDS             1724..3424
                     /locus_tag="IBJ56_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HAM3416960.1"
                     /translation="MTNLRKRLSRLYAEDVVDSLAARIEARVQQTQQRKLTRKDQWDE
                     KDIVLITYGDQFKEESKKTLKTFKKMYDSYLKSTFEVVHFLPFYPYSSDDGFSVIDYK
                     AVNPELGDWEDIKEMEQSARLMFDFVCNHMSAKSDWFKRYLAGDEEFRNFFVEMDPKT
                     DLSSVTRPRATPVLTPFQFDSGKVGHIWTTFSEDQIDLNFASPEVLYKMIDVLMFYLE
                     EGAEYVRLDAVGFMWKVPGTSSIHLEETHEIVKLFRDLVDIAAPGTIIITETNVPHVD
                     NISYFGNGEKEAHMVYQFPLPPLVLHAIHHGNAEFLRNWAKNLELPEGKRTFFNFLAS
                     HDGIGLNPVRGIIPEAEILALVNDLEEEGALVSYKQNPDGSKSPYEINVTYMDALSKQ
                     ADTDDLRMSRFLVAHAVLMSIPGVPAVYVQSILGSRNDYSGVETTGHNRSINRKKYDL
                     AEITAELEQRGSLRKATYDALTKLISTRKAESLFHPEIPMEVLESTAELFVVKRSSDV
                     ESIILIHNLSEKEVSYSLDSGVYTNLYTGSTVTGSDSIKLSGYEFCWLKTKNYREEQK
                     "
     gene            3421..4713
                     /locus_tag="IBJ56_000697"
     CDS             3421..4713
                     /locus_tag="IBJ56_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HAM3416961.1"
                     /translation="MKKKSLVLLVVVLVLSAVLAACGGKESSSKEVTIEFMHSSVEKE
                     RLDVINKLIADFEKENPTIKIKQIPVEEDAFNTKVVTLARSGKLPAVMEVSQDFAKVM
                     DKDELIDQDAVKEVIDSVGEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKAL
                     ADAGFEEPKNWADIEKVAKKFTNKADKKYGIAIPTAESTMSEQAFSQFALSNKANVLD
                     AKGNVTIDTPEMKEALQYYKDLSAYTMPGSNDVTEIKDAFMNGTVPMAMYSTYILPSV
                     YEEGDPKNIGFAIPEEKEKAVYGTVSGLTISAGLDDEQKKATKKFVEYLSQPENMATW
                     VLMSPGGAQPVNKEVVEQKAYKENEVIKSFGELPNEIAASFNDIQVFGLVDGKNLTKM
                     GDITSSGIIAQMVNNVTVGGGDVSADLKAAQKKAEEGK"
     gene            4789..5670
                     /locus_tag="IBJ56_000698"
     CDS             4789..5670
                     /locus_tag="IBJ56_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3416962.1"
                     /translation="MKTKVYKRSDFKLAMILLAPSFVLLAALVLYPMISNIQISFLDM
                     PLNPNIKSVFIGLQNYIDILKDPEFYKSLGLTVAYTVLVVVGSTGMGLLVAIFFNREF
                     RFRRTARSLIILSYVTPSISLIFAWKYMFNNGYGVINFMTVDVLHLFKEAPLWFDNPV
                     SSFFLVTFFAIWRYFPYAFISFLAILQTVDKSLYEAADMDGANIWDKFKIVTLPAIMP
                     VLATVITLRAIWMFYMFTDVYLLTNKVNILGVYLYKTAFAFNDLGKAAAISVILFVII
                     FVVIIFARKRVDLNGGK"
     gene            5657..6508
                     /locus_tag="IBJ56_000699"
     CDS             5657..6508
                     /locus_tag="IBJ56_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HAM3416963.1"
                     /translation="MAVSSKKSKRTKKIAFYVTMVAFLCITLFPFAIMLMTSFKSSKE
                     AISTHPTFFPKEFTFQHYIDIFNPDIFPFLTYFKNSLVVSVFAAGIAVVLGILGAYAL
                     SKLRFKGRMTINASFYTVYMFSGILLIVPLFKIISSLGLYDTETALIITMVVQTLPTA
                     VFMLKSYFDTIPTDIEEAAMMDGLNRFQIILRIIVPLAISGIVSVFVYCFMVAWNDYL
                     FASIFLSSAEKFTLPIGLNTLFSTPDYIWGRMMAASLVTALPVVIMYAISERFIKGNL
                     TDGGVKG"
     gene            6527..7579
                     /locus_tag="IBJ56_000700"
     CDS             6527..7579
                     /locus_tag="IBJ56_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase"
                     /protein_id="HAM3416964.1"
                     /translation="MKKLVATAPRVAELVEYNDREVLEDEVKIKVQFASPKHGTEVVD
                     FRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVECGSKVTEYELG
                     DIVCSYGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYDPAQFAMSGVRDAHVRAGDY
                     VVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEV
                     KRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFPEGFNLGREAHFNN
                     AKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMK
                     YVDQQPDLSIKMGITL"
     gene            7592..8386
                     /locus_tag="IBJ56_000701"
     CDS             7592..8386
                     /locus_tag="IBJ56_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HAM3416965.1"
                     /translation="MKLGTQNQAFFPENIEEKFAYVKEMGFEGFEIDGKLLVENLDEV
                     KKAIEKTGLPVSTACGGYDGWIGDFIEERRLNGLEEIKAILEALAEVGGQGIVVPAAW
                     GMFTYRLPPMVSPRSQAGDFKAVSESLVYLDKIAGETGTKVYLEPLNRYQDHMINLLS
                     DAQKYIDENELKNVEIIADFYHMNIEEDSIPTVLETYKDSIGHIHVADNHRYQPGSGS
                     LDFKTSFDQLKKNGYNGFLTFECRVRSENPEQAYKDALAHLKSCLI"
     gene            8443..9474
                     /locus_tag="IBJ56_000702"
     CDS             8443..9474
                     /locus_tag="IBJ56_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAM3416966.1"
                     /translation="MKKRVAIIGAGQVAEKVHAAYYKTRNELELVAVCDPSLERGEEF
                     RANNGFEKHYATAEEMFAVEKIDIISICTPNRFHFDNVMLSLANGAAVMCEKPPAMSA
                     AEAKAMWELAEEKGAILAYDFHHRFSSEAQFLKRNSALLGEIYCVKATALRRSGVPGW
                     GTFTNKEMQGGGPLIDMGIHMLDAAMFVLGFPKVKKVTAKSFQKIGTKKSAGTFGSWD
                     PEKYTVEDSLFGFIELENGGLIELDTSFALHIKPESALNVDFFGDLAGGSLYPAEIYT
                     DNAGEFQLLEKLGQLEENKHENSMKAFVDSVLGAGKVELAGAEQGYIIQKIVESLYES
                     AEKGESVSL"
     gene            9471..11648
                     /locus_tag="IBJ56_000703"
     CDS             9471..11648
                     /locus_tag="IBJ56_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HAM3416967.1"
                     /translation="MKKIIEKEFALNYLNKYGSQMTVGNGYLGVRGALEEEYPEQVRG
                     MYVAGIYNRPSGSLSSELVNLPDVTRFQVMLDGENFSMQAGKVHAYERYLDMNTGELI
                     RKITWESSAGKKYQLNFHRFVSKAAKHVIAAKVEIMPLSGAAKVKVKTGIDAQQTNFG
                     TQQLAELSLRIFDEKLMVGEYETIESKQHITIATKVNKKGIFTAKNRQLMTEVEQEIA
                     ENQLFTLEKISMVKTSLDQVDAELPNTTYAELKRASETLWADFWEHAGVRVESTNDFD
                     QFALDFACYHLEIMTPKDDFRCSVGAKGLTGEGYKGHVFWDTEIFIMPFFLYNKPEIA
                     KQLLKYRYLHLKEAKEKATKNGYNGALFPWESAFSGEEETPEFAAINIRTGTRQKVAS
                     AISEHHLVADIAYAVCEYETATKDAQFMKECGSELLLETAEFWLSRATNRNGRLEILD
                     VIGPDEYTEHIDNNTYTNYMAHYNVKKALEWNKDNADFVARAEAFLEKIYLPVANESG
                     LIPQDDTFLEKDWINLDKYKAAQGTQGILLDYSRQEVNELQILKQADLVMLFYLFPRM
                     FAPDAVKQNLDYYENRTIHDSSLSKAIHAIVENRTGNRAQAYQFFQEACLIDLGNEPH
                     SSDDGLHAASLGAIWLAVVFGFAGIDTSGELLEIAPNIPDSWQSVAFEFSWKGEKILV
                     EIAQNRLHLSKSTKSVLELVIHGEKHQLTDTLTIKLDQKDVSL"
     gene            11645..12766
                     /locus_tag="IBJ56_000704"
     CDS             11645..12766
                     /locus_tag="IBJ56_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HAM3416968.1"
                     /translation="MKIVIAPDSFKESLTAHEVAEYIKEGFQEIYPDADYHLLPVSDG
                     GEGTLEILSKALGAKKMKIDVSGPFGDPVSAQVAFTDGNKKALIEMAEVCGLHLVPTT
                     RRDPLQVSTKGVGELILHAMEKGATEIIIGIGGSASNDGGIGMASALGYEFLDAENNI
                     VNPIGANLADIATIRSEKVPAELENITVNIVTDVENPLCGEAGASYVFGPQKGLAVTD
                     LATADGAMRQFYQLANPAMVTMPRAGAGGGIGAGLVTFAKANLLSGIDFVIEALQIKT
                     ICEDADLVIVGEGKMDGQTAQGKAPVGVAKVVPKETPVFAICGSVGEGLEAVYEVGIS
                     AVFPSIAKPATLENILKETPNNLRRTARNVAAVWKGRVE"
     gene            12763..13425
                     /gene="pgmB"
                     /locus_tag="IBJ56_000705"
     CDS             12763..13425
                     /gene="pgmB"
                     /locus_tag="IBJ56_000705"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HAM3416969.1"
                     /translation="MTTALKGVVFDLDGVITDTAHYHYLAWKKTAESIGIEFDEAFNE
                     NLKGVSRIDSLLLILKKDGRENDFTEEQIEALAADKNDFYVSLLKEITPADVLPGIKE
                     LIVDLKKQNLKCAIASVSKNARTVLSALEMEQEFDYIVDAAKITKSKPDPEIFVEACR
                     GLGLETSEVVGIEDAQAGIEAINAAGIVSVGVGSGLRDADMTVKSTGLLDLRILEILH
                     SK"
     gene            13548..13868
                     /locus_tag="IBJ56_000706"
     CDS             13548..13868
                     /locus_tag="IBJ56_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HAM3416970.1"
                     /translation="MAIIFAKEDDLEEIISSHPKILLNFWAEWCAPCRCFWPTLEQFA
                     EMEEGNVQVVKINVDKQRALAQKFDVKGIPNSLVLVDGEIKGGIAGIVSCDELRSRFK
                     SLAK"
     gene            complement(13926..14525)
                     /locus_tag="IBJ56_000707"
     CDS             complement(13926..14525)
                     /locus_tag="IBJ56_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HAM3416971.1"
                     /translation="MTNTFLDSIKVRRSIYALDKNVSVEDSKIEEIIKDAVKYSPSSF
                     NSQSSRAVILLGENHDKLWNIVEDTLRAIVPAENFAATEEKVGSFRAGYGTVLFFEDT
                     AVIEGLQENFALYADNFPVWSEQSSGIAQHSVWVALANAGIGASLQHYNPLIDDAVKA
                     EWNIPASWNLRAQMPFGNIVQEAGEKEFIDDADRFRVFK"
     gene            14719..15072
                     /locus_tag="IBJ56_000708"
     CDS             14719..15072
                     /locus_tag="IBJ56_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416972.1"
                     /translation="MVTAIQKEQVRTEKNAAFLTSRPEVDYLERESFFITLKDAIKRE
                     WVVRLKYFQEADVSSLRLAPFEYPSAFLGLGEIETQDLVPLEIDMLTEEVILKDIVGY
                     EYVIEFRDIIDVELL"
     gene            15175..15597
                     /locus_tag="IBJ56_000709"
     CDS             15175..15597
                     /locus_tag="IBJ56_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3416973.1"
                     /translation="MRGYYDEISFDVNTTAKKMHLFLLRSIASYDVTPEQWSVLEGIE
                     ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELVVREVSTEDRRISLLSLTDKGRKET
                     NELRDIVEASCERMFAGISRADLEQFTAILKNISTNIE"
     gene            15611..16759
                     /locus_tag="IBJ56_000710"
     CDS             15611..16759
                     /locus_tag="IBJ56_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3416974.1"
                     /translation="MENKTRLWTKDYVFLLLGSVLLYIGFMVFMPTLPARIIELGGTQ
                     MEASLAVGLFSIVALLMRAIAGSWNDKFGPKVLIIVGFLILILTTVNFYWSTAVAALL
                     ILRLFHGAGWGIGTTSIATGVSKLVPPSRTGEGIGFYGLTTALGMSLAPIIAILIMNY
                     FSFDVLVTFSLVLMVFILILMTQVKIPKSEKIVHQKMKLFEKTALLPAGLCLLMAIPL
                     GGIQTFMMVYGTELGISTTWIYFIGQAIMVLVSRLFAGRLYDTKGHRFVIIPGALSMI
                     IGILILSFATGAISLFIASLFFGLGYGMSQPALQALAVDRAAPHNKGTANGTFLSGMD
                     IGMAVGSFGLSIVATYYNYAIMYRTAIIALVVFFAVYWFTLGRKVKNS"
     gene            17130..18221
                     /gene="serC"
                     /locus_tag="IBJ56_000711"
     CDS             17130..18221
                     /gene="serC"
                     /locus_tag="IBJ56_000711"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HAM3416975.1"
                     /translation="MERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSE
                     LFQNILDDAESLIRELMEIPENYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWA
                     KKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDAAYLHVTTNNTIEGTAMFDV
                     PDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLP
                     SMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYNYID
                     QSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVQEAEANGFKNLKGHRSVGGMRASLY
                     NAFPIEGVEALIAFMEKFANARKGGEVRV"
     gene            18214..19401
                     /locus_tag="IBJ56_000712"
     CDS             18214..19401
                     /locus_tag="IBJ56_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HAM3416976.1"
                     /translation="MFNIQTFNAIAKEGLKTFDLEKYVIDANQPADGILLRSYNLHDF
                     DFPETVKAVARAGAGVNNIPVENCSEKGIVVFNTPGANANAVKELVLASLFVSARPIL
                     EGTEWVKELPAEDDVEQKVEAGKKAFAGTELAGKKLGIIGLGAIGALVANDALSLGMD
                     VVGYDPFVSVDTAWRISKEVERAMTIEEVLATCDYLTVHVPLTDKTRGMFNADTLQLV
                     KDNAVLLNFSRGELVDSASVKEALDDGLLRLYITDFATKELLNHKKVHVFPHLGASTE
                     EAETNCAKMAAKELQSYLETGSIKNSVNFPNVEMPYNGHPRIGICHKNIPNMVGQITT
                     ELGKYSLNILDMINRSKNEYAYTLIDIDKETQANLEQLKSDLLAVQGVLRVRVIEPLG
                     VTV"
     gene            19490..20731
                     /locus_tag="IBJ56_000713"
     CDS             19490..20731
                     /locus_tag="IBJ56_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 domain-containing protein"
                     /protein_id="HAM3416977.1"
                     /translation="MVNIRPFKAIRPIKNLAEKVASLPYDVLNSEEARELGDANKYSF
                     LHIDKAEIDLDPAVSPYDPAVYQKAADNLEQFELDGWLGREANPAFYIYQLTMDGRPQ
                     TGLVVCTSIDDYTNGKIKKHELTREEKELDRIRHVDVCDANTSPIFLTYRGKEAINAL
                     VESWVNENEPEYDFESFHGVAHKVWAITDAHILEDLSAAFSEVPALYIADGHHRTESA
                     VKVGLKRREEFPEAGPEAEFNFFLSVVFPEEQLEILDYNRVVNVPIEADFLSKVEASF
                     DVEKVGKEAFKPEKPKQVGMYLDGNWYKLTAKSEVIPNDVIGQLDVSILQSQVLTPIF
                     GIEDIRRDNRIDFVGGIRGLSELARLVDNGSHSVAFAMYPPTMDDLLSVADAAEIMPP
                     KSTWFEPKLLSGLFVHDLESK"
BASE COUNT         6399 a         3307 c         4854 g         6173 t
ORIGIN      
        1 tttcataagg attttccata ttggattgat cggaatgtca tcaaaacaga acttcatttg
       61 acgacagata aatcaattga tcagcaagaa cgctacacac gtcaagaatg tgacatcaaa
      121 tctaagtatt tgaaccatcg tatgacgaag aaaattcaca aaacggagct tcttgttatt
      181 tagaatatcg tccatatcac aatctcacta ttaaagagaa ggatttggaa gaatatgtgg
      241 aagctaataa agaaattctc aagagtaact ggggtatcgg tattgatatc attgaggatg
      301 gattgtttaa gaaattaggt aagttattta aataaaataa aaaaagcatc ctttataaaa
      361 gggtgctttt tttataaatg gtcccgactg gtctcgaacc agcgaccccc accatgtcaa
      421 ggtgatactc tcccaactga gctacaggac cagtaaactc agaaaataag tttagacgtt
      481 tattttctga atggattcac gttcaatcat ttcggtttta ataatcgttg tttttggtac
      541 atttttatct tgatggatta agcggaataa taagttagtc gcttttttcc ctagtttgtt
      601 gattggaata tcaatagacg ttagcggcgg cgacaagaaa gaggacgcta ctttatcatt
      661 atagccgatg acggaaaaat ctgcaggtat ttgtaaattt ttatcggcgg ccattttgta
      721 aatgctaagg acttttaaat cgtcggttgc gaaaactgcg gttggtttat ctgggccttc
      781 cattaggcgt agtgctgctt tgtagctatc ttctatacta taaccgctat caataatcca
      841 gtcgttacgt aaatctaatt ggtggtcaaa caggcagctg cggaaaccag caagacgatc
      901 tatcgacacg tgataatcga gtggagcatg gatacaagcg attttttgat gaccttgctt
      961 gattaaatgt tttgttagag cgtaactgtc gccaaaattg tcggtgtcaa cagagtatat
     1021 atttttgtaa tgaccttcta cttttccggt cacgacgatg gggatattat atgggtctaa
     1081 ttggtgaaaa aaatcttcat cagcgggaga acttagcata ataatgcctt ttatcatttt
     1141 ttcttgaatt ttggagaggc attttttaag ttcgtcttcg ctgtttttag cagtttgaag
     1201 aattaggtcg aaattttcca actcagcttg agtggaaatc gattgaatta tttcggaaaa
     1261 aaatgggttt ccggttgtgg ttgtagtaga gcgatttgaa ataaccatga tagcatcaaa
     1321 gcccgaagag gtaagtgcgc gtgctagttt gcttggttgg tagtttagtt cgtcaatcgc
     1381 ttctagtact ttttttcgtg attcttcgga aatgttagct tgattgttta gtactctaga
     1441 taccgtcgat tttgaaactc ccgcgtgttt tgctatgtca tatatggtag atgccaaggt
     1501 aatcttcctt tctctctcta ttgtttccgg tatcggttcc ggtcattatc atccatgttt
     1561 atattactca attttcaagt aaatgtccaa ctagatgtta tctatgcaag aaaactcact
     1621 attagcaacg tgttagaaaa aacattaaaa attgtgtttg acagaaagcg ctttccatac
     1681 tataattctt cttgtgggag cgctcccggt taggaggtaa atgatgacga atttaagaaa
     1741 acgactttcg cgtttatatg ccgaagatgt ggtagatagt ttggcagcta gaatcgaagc
     1801 gcgggtacag caaacgcaac aacgaaagtt aacacgaaaa gatcagtggg acgagaaaga
     1861 tattgttcta attacatatg gggaccaatt taaagaggaa tccaaaaaaa cgttaaaaac
     1921 ttttaagaaa atgtatgata gttatttaaa atcgactttt gaggtagttc atttcttgcc
     1981 tttttatcct tattcttcgg atgatgggtt ttcggtcatc gattataaag cggtgaaccc
     2041 ggaacttggt gattgggaag atattaagga gatggaacag tcggcgcggt tgatgtttga
     2101 ttttgtttgt aatcatatgt cggcgaaaag tgattggttt aagcgatatt tggcgggtga
     2161 cgaggagttt aggaactttt ttgtggaaat ggatccaaag acggacctta gttcggtaac
     2221 aaggccacgt gcgacaccag tgctgacacc atttcaattt gattcaggaa aagtagggca
     2281 tatttggacg acttttagtg aggatcaaat cgatttaaac tttgcttctc cggaagtgct
     2341 ttacaagatg attgatgttt tgatgttcta tttagaagaa ggtgcggaat atgtgcgact
     2401 tgatgcggtt ggctttatgt ggaaagtgcc gggaacgagc tcgattcatt tagaagagac
     2461 gcatgaaatc gtgaaattat ttagagattt agtagacatt gcagctccgg ggacgattat
     2521 tataaccgaa accaatgtgc cgcatgttga taatattagt tattttggaa atggtgaaaa
     2581 agaagcgcat atggtttatc aattcccgct tccaccactt gtgctccatg cgatacatca
     2641 tggtaatgca gaattcctcc gtaactgggc gaagaattta gagctaccag aaggcaagcg
     2701 aacattcttt aatttccttg cctcacatga tgggattggg ttaaatccag tgcgcggcat
     2761 tattccagaa gctgaaattt tggctttagt gaatgatttg gaggaagaag gcgcgctcgt
     2821 ttcatataag caaaatccag atggttctaa gagtccgtat gaaattaacg tgacgtacat
     2881 ggatgcgcta agtaaacagg cggacacaga tgacttgagg atgtcgagat ttcttgtggc
     2941 tcatgcagta ctaatgtcta tcccaggcgt tccagccgtt tatgttcaaa gtattttagg
     3001 aagccgcaat gattattcag gcgtagaaac aacaggccac aatcgctcta ttaatcgaaa
     3061 aaaatacgac ttggcggaaa ttacagcaga gttggaacaa agaggctcct tacgaaaagc
     3121 aacttatgat gcgttaacga aattaattag cacacgaaaa gcggaatcac ttttccatcc
     3181 agaaataccg atggaagttt tagaatctac ggcggaattg tttgttgtta aacgttcatc
     3241 cgacgtggaa tcgattatat tgattcataa tttatcagaa aaagaagtga gttattcact
     3301 agacagcggt gtttatacaa atctttatac gggctccacg gtaactggga gcgattccat
     3361 aaagcttagt ggctatgaat tctgctggct aaaaaccaaa aattacaggg aggaacaaaa
     3421 atgaagaaaa agagtcttgt attacttgtt gttgtgttgg ttctaagtgc ggttctagct
     3481 gcatgtggag ggaaagagtc tagtagtaag gaagtaacga ttgaatttat gcattcatcc
     3541 gttgaaaaag agcgtttaga tgttattaat aaattaattg ctgattttga aaaagaaaat
     3601 ccaacaatca aaatcaaaca aattccagtt gaagaagatg cgtttaatac aaaagttgtc
     3661 acacttgctc gctctggtaa acttccagca gttatggaag taagccaaga ttttgccaaa
     3721 gtaatggata aagatgagtt gattgaccaa gatgcagtga aagaagttat cgactcggtt
     3781 ggagaagaca aatactacga aggtgcaaca aacttagtac gttctgaaga tggtaaaagc
     3841 tatatcgcag cacccttaag cggttgggtt caaggtattt ggtacaacaa aaaagcttta
     3901 gccgatgctg gttttgaaga acctaaaaac tgggcggata ttgaaaaagt agcgaaaaaa
     3961 ttcacaaata aagcagataa aaaatacggt attgcaattc caacagcaga aagcacgatg
     4021 agtgagcaag ctttctccca attcgcactt tctaataaag ccaatgtttt agatgcaaaa
     4081 ggtaatgtaa cgattgatac accagaaatg aaagaagcac ttcaatatta taaagatttg
     4141 tcagcataca cgatgcctgg ttcaaatgat gtaactgaaa ttaaagatgc atttatgaat
     4201 ggaacagttc cgatggcaat gtactctacg tatatccttc catctgttta tgaagaaggc
     4261 gatccaaaaa atatcggttt cgcaattcca gaagaaaaag aaaaagcagt ttatggtaca
     4321 gtttctggtt taactatttc agcaggactt gatgatgagc aaaagaaagc aacgaagaaa
     4381 tttgttgaat acttgtctca accagaaaat atggcaactt gggtattaat gtctccaggt
     4441 ggagcgcaac cagtaaataa agaagtagta gaacaaaaag catacaaaga aaatgaagta
     4501 attaaatcgt ttggtgaact tccaaatgaa atcgcagcat cattcaatga catccaagtt
     4561 ttcggacttg ttgacggtaa aaaccttaca aaaatgggag atattactag ctcaggcatt
     4621 atcgcacaga tggttaataa cgtaactgtt ggcggtggcg atgtatcagc ggacttaaaa
     4681 gctgcacaga aaaaagctga agaaggtaaa taatcaaata gcggggagtt gagtctcccc
     4741 gtctttttta acagtttagt acgtcgcttt ttgatttaag gaggcattat gaaaacgaaa
     4801 gtatataaaa ggtccgactt taagttagca atgattttac ttgcgccaag ttttgtttta
     4861 ctggcagcac ttgttttata tccgatgatt tcaaatatcc agattagttt tttagatatg
     4921 ccactaaatc cgaatattaa atcagtcttt atcggtttac aaaactatat agatattttg
     4981 aaggatccag agttttataa atcactaggt cttactgtgg cttatacagt acttgtagtg
     5041 gttggaagta ctgggatggg actacttgtg gcgattttct ttaaccgcga atttcgtttt
     5101 agaagaacgg ctcggtcgct tattattttg tcatatgtaa caccatctat ttctcttatt
     5161 tttgcatgga aatatatgtt taataatggt tatggcgtaa ttaattttat gactgtggat
     5221 gtactccatc tgttcaaaga agcgccactt tggtttgata atccagtttc tagtttcttt
     5281 ttagtaacct tttttgcaat atggcgttac ttcccgtatg catttatttc gtttttagcg
     5341 attttgcaaa cggtcgataa gtcgctttat gaggcggctg atatggacgg agcgaacatt
     5401 tgggataaat tcaaaattgt tactttgcca gcgattatgc cggtacttgc gacagttatt
     5461 acgcttcgtg cgatttggat gttctatatg ttcaccgatg tatacttact cacgaataaa
     5521 gtaaacatcc ttggagttta tttatataaa acagcattcg cattcaatga tttagggaaa
     5581 gcagcagcga tttctgtcat attatttgtc attatttttg ttgtgattat ttttgcaaga
     5641 aagcgggtgg atttgaatgg cggtaagtag taaaaagtca aaaagaacaa agaaaatcgc
     5701 gttttatgtg acgatggttg catttttatg tatcacgttg ttcccatttg cgattatgtt
     5761 aatgacttca tttaagagca gtaaagaagc catttcaaca catccaacat ttttcccgaa
     5821 agaattcact ttccagcatt acatcgatat tttcaaccca gatatttttc cgtttttaac
     5881 gtactttaaa aatagtttgg ttgtttcggt ttttgcggcc gggattgcag ttgttttggg
     5941 gattttaggc gcttatgcgt tgtcgaaatt acgctttaaa gggcgtatga cgattaatgc
     6001 gagtttttac acggtttata tgttctccgg aatcttgtta attgttccgt tgtttaaaat
     6061 aatttcgagt ttggggttat atgatacgga aacagcttta attatcacga tggttgtaca
     6121 aacactacca actgcagtat ttatgctgaa aagttatttt gatacgattc caactgatat
     6181 tgaagaagca gcaatgatgg acgggctgaa tcgcttccag attatcttac gaattattgt
     6241 tccgcttgcg atttcgggta ttgtttctgt gttcgtatac tgcttcatgg tagcttggaa
     6301 tgattatctg tttgcttcga ttttcttatc tagcgcagag aaattcacgt taccgattgg
     6361 cttgaataca ttatttagta cacctgatta tatttggggt agaatgatgg ctgcatcgct
     6421 tgttacggcg cttccagtcg ttattatgta cgcaatttca gaacgattta tcaaaggaaa
     6481 cttaacagac ggtggagtta agggataaga aaggaagtta ttgaaaatga aaaaattagt
     6541 agcgacagcg cctcgtgtgg cggaattagt agaatataat gatcgtgaag ttttagaaga
     6601 tgaagtgaaa attaaagttc aattcgcttc tccaaaacat ggtacagaag tagttgattt
     6661 tagaggaatt agtcctttta ttgatgaaga attttcacca gaatggaatt tatttgtttc
     6721 acgtgaaaca aatagtgcgc gaggcattgt atttggcgag tttcagctag gtaacatggt
     6781 cgttggtgaa gtagttgaat gtgggagcaa agtaacagaa tacgagcttg gagatatcgt
     6841 ttgttcttac ggaccgatta tggaaactgt tattgtaaaa gctgtcgata attataaact
     6901 acgtaaattg ccaaaaggtg ctaattggaa aaacgcggtt tgctatgacc cggctcaatt
     6961 tgcgatgagt ggcgtgcgtg atgcacatgt tcgtgcgggc gattatgttg ttgttgtcgg
     7021 acttggtgcg attggtcaaa ttgcgattca actggcgaaa aaagctggag caagtgttgt
     7081 tatcggggtg gatccactta gtcatcgtcg tgaaattgct gaaaaacatg gagcagatgc
     7141 tacttttgat ccaattacga cagatgttgg cttagaagtg aagcgtctta ctggtaaact
     7201 tggtgcggat tcgattattg aaacgagcgg gaatgcggct gcacttcaag cggcactacg
     7261 cggaatagct tacggcggaa caatttctta tgtagccttc gcgaaacctt tcccagaagg
     7321 atttaatctt ggtcgggaag ctcatttcaa caatgcgaaa attgtctttt cacgtgcggc
     7381 tagtgaacca aatccggatt atccgcgctg ggatcgtaag cgtatcgagg agacttgttg
     7441 ggaactactg atgaacggtt acttggattg ttcggacatt attgatccag tcgttccgtt
     7501 tgcagattca gctgagagct acatgaaata cgtcgatcaa caacctgatt taagtattaa
     7561 aatggggatt accctttaag gagcgataat aatgaaatta ggcacacaaa accaagcatt
     7621 tttcccagaa aatatagaag aaaaatttgc ttatgtaaaa gaaatgggct ttgaaggttt
     7681 tgaaattgat ggtaaattac ttgttgaaaa tttggacgaa gtgaagaaag ctatcgaaaa
     7741 aacggggcta cctgttagta ctgcatgtgg tggctatgac ggctggattg gtgacttcat
     7801 tgaagagcgc agactgaatg gtttagaaga aattaaagcg attttagaag ctttagcaga
     7861 agtcggtggg caagggattg tcgttccagc ggcgtggggg atgttcacgt atcgtcttcc
     7921 gccaatggtt tcgccgcgta gccaagccgg agatttcaaa gcagtgagcg agtcgttggt
     7981 ttatttggac aaaattgctg gtgaaactgg gacgaaggtt tatcttgagc cgcttaacag
     8041 ataccaagat catatgatta atttgctaag tgatgcgcaa aaatatattg atgaaaatga
     8101 acttaaaaat gtagaaatta tcgctgattt ctatcatatg aatattgaag aagatagcat
     8161 tccgactgtg cttgagacgt ataaagattc gatcggtcac attcatgttg ctgacaatca
     8221 tcgctaccaa ccaggaagcg gtagccttga ttttaaaaca agttttgatc aactgaaaaa
     8281 gaacggttac aacggatttt taacttttga atgtcgtgtt cgcagtgaaa atccagaaca
     8341 agcttataaa gatgcgttgg cacatttaaa aagctgttta atttaaaata gaaaatccgt
     8401 cccaattaaa gcggacggat ttttctaaaa ggagtttcgg atatgaagaa aagagttgca
     8461 attatcggtg ctggacaagt cgctgagaag gtccacgctg cgtattataa gacaagaaat
     8521 gaactggagc ttgtagctgt ttgcgaccca agtttggagc gtggcgaaga gtttcgtgcg
     8581 aacaatggtt ttgagaagca ttatgctacg gcagaagaga tgtttgcggt cgagaaaatc
     8641 gatattatta gtatttgcac gcctaatcgg ttccattttg ataatgtgat gttgtcacta
     8701 gcgaatggag cggccgttat gtgtgaaaag ccacccgcaa tgagtgcggc ggaagcgaaa
     8761 gcaatgtggg aacttgcgga agaaaaaggc gcgattttgg cgtatgattt tcatcatcgt
     8821 ttttccagtg aagcacagtt tttaaagaga aattcggcgc ttctaggtga aatttattgt
     8881 gtgaaagcaa ctgcgcttcg tcgttctggc gtgccgggtt ggggaacttt tacgaataaa
     8941 gaaatgcaag gcgggggtcc gctgattgat atgggaattc acatgctcga cgcggcgatg
     9001 tttgtccttg gttttccaaa agtgaagaaa gtaacggcaa aaagttttca aaaaatcgga
     9061 accaagaaaa gtgcggggac atttggttca tgggatccgg aaaaatatac ggtagaggat
     9121 tctttattcg gctttattga actggaaaat ggaggattaa ttgaattaga tacttctttt
     9181 gcgctacata tcaagccaga aagtgcgcta aatgttgatt ttttcggtga tttagcagga
     9241 ggcagtttat acccggctga aatttataca gataatgcag gtgaatttca gttgttagag
     9301 aagttaggac aactggaaga aaataaacac gaaaacagca tgaaagcatt tgttgatagc
     9361 gttcttggtg ctggaaaagt ggaacttgct ggcgctgaac aaggttatat catacaaaaa
     9421 attgttgaaa gtttatacga atcggcagaa aaaggtgaga gtgtttcttt atgaagaaaa
     9481 taatcgagaa ggaatttgca ttaaattatc taaataaata tggtagccaa atgactgtgg
     9541 gaaatggcta tttgggcgtg cgcggtgctc ttgaagaaga atatccggag caagttcgcg
     9601 gtatgtatgt ggcggggatt tataatcgtc cgagcggttc gctgagttcg gaacttgtta
     9661 atttgccgga tgtgacgcgt ttccaagtga tgcttgatgg ggaaaatttt tcgatgcaag
     9721 cggggaaagt ccatgcttac gagcgttatt tagatatgaa tacaggagaa ttaattcgaa
     9781 aaattacttg ggaaagtagc gcgggcaaga agtatcaact gaattttcac cgatttgttt
     9841 caaaagcagc aaagcacgtc attgctgcta aagtggagat aatgcctttg agcggtgcgg
     9901 cgaaagtcaa agtaaaaact ggtattgatg cgcaacaaac taattttgga acacagcagc
     9961 tggcggagtt gagtctacga atttttgatg agaagttgat ggttggcgaa tatgagacca
    10021 tcgagagcaa acagcatatt acaatagcaa caaaagtgaa taaaaaaggg attttcactg
    10081 cgaaaaacag acaattaatg accgaagtag agcaagaaat cgctgaaaat caactattta
    10141 ctttggagaa aataagcatg gttaaaacat ccctggatca agtggatgcg gaacttccaa
    10201 atacgactta tgcagaattg aaaagagctt cggaaacttt atgggcagat ttttgggagc
    10261 atgcgggtgt ccgtgttgag agcacgaatg attttgacca atttgcacta gattttgcgt
    10321 gctatcactt agaaattatg acgccgaaag atgattttcg ttgtagtgtt ggtgcgaaag
    10381 ggctgaccgg ggaaggttac aaagggcatg ttttttggga tacagaaatt tttattatgc
    10441 catttttcct ttataataag ccggaaattg ccaaacaatt attaaaatat cgctaccttc
    10501 atttgaaaga agcgaaagaa aaggcaacga aaaacggcta taatggggcg ctttttccgt
    10561 gggaaagtgc attctctggc gaagaagaaa cgcctgaatt tgcagcgatt aatattcgaa
    10621 ctggcacacg tcaaaaagta gcgtcggcga tttcggagca tcatttagtt gcggatattg
    10681 cttatgcggt ttgtgaatat gaaacggcga ctaaggatgc tcagtttatg aaagagtgtg
    10741 gttcagagct gctccttgaa acagcggaat tttggctaag ccgtgcaact aatcgtaatg
    10801 gacgactgga aatccttgat gtgattggtc cagacgaata caccgagcat atcgataata
    10861 atacgtatac gaattatatg gcacactata atgtgaaaaa agctttagaa tggaataaag
    10921 ataatgcaga ttttgtagcc cgtgcagaag cttttcttga aaaaatctat ttacctgtcg
    10981 caaatgagtc tggcttaatt ccgcaagatg atactttctt agaaaaagat tggataaatt
    11041 tggataaata taaggcggca caaggaacac aagggattct actagattat tctcgtcaag
    11101 aagtgaacga actacaaatc ttaaagcaag cagatttagt catgttgttt tacctgtttc
    11161 cgaggatgtt tgcaccagat gctgtgaagc agaatttgga ttactatgaa aatcgaacaa
    11221 ttcatgattc ctctttaagt aaagcaatcc atgcaattgt agaaaatcga actggaaatc
    11281 gcgcacaagc ctaccaattt ttccaagaag cgtgtttaat tgaccttgga aatgagccgc
    11341 attcatcgga tgacgggctc catgcggcct cactcggcgc aatatggttg gcggtggttt
    11401 ttggatttgc gggtatagat actagtggag aactacttga aatcgcgcca aacataccgg
    11461 attcctggca atctgtggca tttgaattct cttggaaagg tgaaaaaatc ttggtagaaa
    11521 ttgcgcaaaa cagattacac ctttcaaaaa gcacaaaaag cgtgctagaa ttagttattc
    11581 acggagaaaa acatcaatta acagatacat taactattaa gttggatcag aaggatgtgt
    11641 ctttatgaaa attgtcattg caccggattc attcaaagaa agtttgacgg cgcatgaggt
    11701 ggcagagtat attaaagagg gctttcaaga aatttatccg gatgctgatt atcatttact
    11761 ccctgtcagt gatggcgggg aaggtacgct agagatttta agtaaagctt taggtgcgaa
    11821 aaaaatgaaa atcgatgtgt ccggcccttt tggtgaccca gtttcagcac aagttgcttt
    11881 tacggatggg aacaaaaaag ctttaataga aatggccgaa gtttgtggtt tgcacttggt
    11941 tccgacgact agacgcgatc cacttcaagt gagtactaaa ggagtgggcg agctaatttt
    12001 gcacgccatg gaaaaaggtg cgaccgagat tattattggg attggtggaa gcgcttcaaa
    12061 cgatggcgga attggcatgg ctagtgcgct tggctatgaa ttcctagatg cagaaaataa
    12121 tatcgtcaac ccgattggcg caaatttagc tgatatagca accattcgtt ccgaaaaagt
    12181 cccagctgaa ctagaaaaca tcacagtaaa tattgtgacg gatgtcgaaa acccactttg
    12241 tggagaagct ggcgcatcgt atgtgtttgg tccacaaaaa gggctagccg ttacagattt
    12301 agcaacagct gatggggcaa tgcgccagtt ttatcagtta gcgaatcccg ccatggttac
    12361 aatgccgcga gcaggtgccg ggggtgggat tggtgctgga cttgtgacgt ttgcaaaagc
    12421 taacctttta tcgggaattg attttgttat tgaagcactt caaatcaaaa ccatttgtga
    12481 ggatgcagat ttggtcattg ttggcgaagg gaaaatggac gggcaaaccg cacaagggaa
    12541 agctcctgtg ggtgttgcga aagtagtgcc gaaagaaaca ccagtttttg caatttgtgg
    12601 aagtgttggt gaaggactag aagcagtata tgaagtcgga atcagcgcag tatttccatc
    12661 cattgccaaa ccagcaactt tagaaaatat actgaaagaa acaccaaata atttaagaag
    12721 aaccgcgcga aatgttgcgg cagtttggaa aggacgagta gaatgacaac agcattaaaa
    12781 ggagtagttt tcgatttaga tggcgtcatc acggatacag cacattatca ttacttagcc
    12841 tggaaaaaaa cagctgagag tattggaatc gaatttgatg aagcatttaa tgagaattta
    12901 aaaggagtaa gcagaattga ctccctactt cttattttaa agaaagacgg tcgcgaaaat
    12961 gactttacag aagagcagat cgaagctctt gcagctgata aaaatgactt ttatgttagc
    13021 ttgctaaaag aaattacgcc agcggatgtt ttaccaggaa ttaaagaact tatagtggat
    13081 cttaaaaagc aaaatctcaa atgcgcaatt gcatctgttt cgaaaaatgc tcggacggtt
    13141 ttgagcgcat tagaaatgga acaagaattt gattatattg tcgacgcggc taaaatcact
    13201 aaatcaaaac ctgatccaga aatttttgtg gaagcttgcc gtggtctagg tttagaaaca
    13261 tcagaggtag tcggaattga agacgctcaa gctggaattg aagcaataaa tgcagctgga
    13321 attgtaagcg ttggtgttgg ttctggactc cgtgacgcgg atatgactgt gaaaagtaca
    13381 ggtttgctag atttacgcat tttagaaatc ttacatagca aataaaatgt ttcacgtgaa
    13441 acaaaagtgt caaaaaatga acaaaaagca agatatattg ctattctaaa accctttact
    13501 tgaccacgat acaactttgg aatattctga atgtgaggtg gatatgtatg gcgattattt
    13561 ttgcaaaaga agatgacttg gaagagatta ttagtagcca tcctaaaata ttacttaact
    13621 tttgggcaga gtggtgcgca ccgtgtcgct gcttttggcc aacacttgag caattcgctg
    13681 agatggaaga aggtaatgtc caagttgtga aaattaatgt agataaacaa cgcgcattag
    13741 ctcagaaatt tgatgtaaaa ggaataccaa attcgcttgt tcttgttgat ggagaaatta
    13801 aaggcgggat tgctggtatt gtaagttgtg atgaacttag aagcagattt aaaagtttgg
    13861 caaaataaaa attccgcgat accagttaat ggtcgcggaa ttttttgttt cacgtgaaac
    13921 atttattatt tgaaaacgcg gaaacgatca gcgtcatcga tgaattcttt ttcgccagct
    13981 tcttgaacga tgttaccaaa cggcatttgc gcgcgtaagt tccagcttgc aggaatattc
    14041 cattcagctt taacagcatc gtcaattagt gggttgtaat gttgtagaga tgcaccaatt
    14101 ccagcgtttg caagagcaac ccatactgaa tgttgtgcaa tacctgaaga ttgttcagac
    14161 catacaggga agttgtctgc atatagagcg aagttttctt gtaagccttc aataacagca
    14221 gtatcttcaa agaaaagaac tgttccgtat ccagcgcgga aagaaccaac tttttcttct
    14281 gtagctgcaa agttttcagc aggtacgata gcgcgtaatg tatcttctac gatattccaa
    14341 agtttatcat ggttttctcc taaaagaatg acagcgcgag agctttggga gttgaatgaa
    14401 gatgggctat atttaacagc gtctttaata atttcttcaa ttttggaatc ctcaacggaa
    14461 acgtttttat ctagtgcata aatggaacga cgaactttaa tagaatctaa aaatgtatta
    14521 gtcataataa taaaactcct ttgttaatgt tatttactta cataagtata gcaactattc
    14581 attaatttgc aagtgttttt gtcggaaaaa gaatatgtaa gcgctaaacc tattcaggct
    14641 cttatgaaaa aattttttta gcaaattact tgattttaag aacgtttgtt cgtataataa
    14701 agttaagagg tgataatgat ggttacggca attcagaaag agcaagtgcg aacagagaag
    14761 aatgctgctt ttttaacgag tcggccagaa gtggattatt tagagcgcga aagctttttt
    14821 atcacattaa aagatgctat aaagcgagaa tgggtcgttc gtttaaaata ttttcaagaa
    14881 gcagatgtat cttctctgcg tttagcgcca tttgaatatc cttccgcatt tcttgggctt
    14941 ggagagattg aaacacagga cttagtgccg ctagaaatag atatgttaac ggaagaagtt
    15001 attttgaaag atattgttgg gtatgagtat gtaatcgaat ttagagatat tatagatgtg
    15061 gaattattgt aggaacagtc gtttattcga ctgtttttct tgtcaaaaaa gtaatcagta
    15121 tgtataatgg ttgttatgac aattattgtt acgacaatag aaatgaggat aaatatgcgc
    15181 ggatattatg atgaaatatc atttgatgta aatacgacag cgaagaaaat gcatttattt
    15241 ttgctgcgtt cgattgcaag ttatgatgtg acaccagagc aatggtcagt tttagagggg
    15301 attgaggcga acgagccgat ttcgcaaaaa gagattgctc tttggacgaa aaaggacacg
    15361 ccaaccgtga atcggattgt cgatgtttta cttaggaaag agcttgttgt gcgggaagtg
    15421 agtacagaag atagacggat ttcactttta tctttaacgg acaaagggag aaaagagacg
    15481 aatgaactcc gcgatatcgt ggaggcgagt tgtgaaagaa tgtttgctgg gatttctcgc
    15541 gcagatttgg aacaattcac ggctatttta aagaacattt ctactaatat agagtaaaga
    15601 ggggtaaatt ttggaaaata agacaagact ttggacgaag gactacgtat ttttattgtt
    15661 aggaagtgta cttttatata ttggatttat ggtgtttatg cctacgttgc cggctcgcat
    15721 tattgaacta ggtggaacgc aaatggaagc gagtttggcg gtggggctat tctccatcgt
    15781 agcactatta atgcgggcga ttgctgggag ttggaatgac aaattcggac cgaaagtact
    15841 tattatcgtg ggctttttga ttttaatttt aactacagtg aacttttatt ggtcaacggc
    15901 ggtggcggcc cttctcatat tacggctttt tcacggggct ggctggggta tcggaacaac
    15961 ttctattgct acaggcgttt ctaaactcgt gccaccaagc agaacgggag aaggtattgg
    16021 tttttatggg cttacgactg cacttggaat gtcacttgcg ccgattatcg ctattttaat
    16081 tatgaattat ttttctttcg atgttttagt gacgttttcg cttgttttga tggtgtttat
    16141 tttaattttg atgacacagg tgaaaattcc aaaatcagaa aagattgtac atcaaaaaat
    16201 gaaattgttt gagaaaacgg ccttgcttcc ggcgggcttg tgtttattaa tggctattcc
    16261 gcttggtggg atccagacat ttatgatggt atatggaaca gaactgggga tttcgacaac
    16321 gtggatatat tttatcgggc aagcgattat ggttcttgta agccgtttgt ttgctgggcg
    16381 actttatgat acgaagggac accgttttgt tattattcca ggagcgcttt cgatgataat
    16441 tgggatatta attctttctt ttgcaactgg tgcaatcagc ttgtttatcg catcgttatt
    16501 cttcgggtta ggttacggga tgtcgcaacc ggcgcttcaa gcactggctg tggaccgggc
    16561 tgcaccgcac aataaaggta ccgcgaacgg gacttttctt tcgggaatgg acattggaat
    16621 ggctgttggt agttttggtt tgagtattgt tgcgacttac tacaattatg ctattatgta
    16681 tcgcacagca attattgcac ttgttgtatt ttttgctgtg tattggttta ctttaggacg
    16741 aaaagtgaaa aatagctaac atcttttgtg aagtgttttt caaaaagtag aagtgcgaga
    16801 attgctttaa atagcggttt ctcgtgcttt tttaatgtca gaaagtttaa acatcacatt
    16861 tatttgtaga tttagtataa attttctgaa aaacagctct gtttctgcta taatatacaa
    16921 aagtacaaaa ggcagtgttt acttttaagc gctgaaaaat ccgaatattg tgtagaatat
    16981 cacaggttcg gcttttttat ttcttaacaa cagaacttcg aaaagcataa gtgtaacgag
    17041 gaaggctcat atctggccaa taagtattcg attattggtg aaaatttttg taagtaattg
    17101 gggaaatttg aagacaggag agatgttgag tggaacgtgt ttataatttt tcggcaggtc
    17161 cggcagtttt accagtaccg gtacttgaaa aggttcaaag ggagctactc tcttacaatg
    17221 gttcaggaat gtcagtaatg gagctgagtc accgttcaga attatttcaa aacatcctag
    17281 acgatgcgga gagcttaatt cgagaattga tggagattcc agaaaattac aaagtactat
    17341 ttttgcaagg tggcgcgagt ttgcaatttg atatggtgcc aatgaatctt gcaaatggca
    17401 aaaaagcagc gtatgtaaac actggatctt gggcgaagaa agcaatttcc gaagctaaga
    17461 aaattcaggg tgtagaggtg gaagtaattg cctcatcgga agaccgcaat ttcagctata
    17521 ttcctgagat tcctacagtt tctagtgacg cggcttactt acatgtaact acaaataata
    17581 caatcgaagg aacagcaatg tttgatgtgc cagactcagc tgtcccggtc gttgcggata
    17641 tgtcctccaa tattttatcg agcgtttatg atgtgaaaaa atttggctta atttatgcag
    17701 gagcgcaaaa gaacattggg cctgctggat taacgcttgt catcgtgcgc gaagacttga
    17761 tagggcaagt agagggactt ccttctatgt tagattttaa agtacaagcc gagaatgatt
    17821 ccatgtataa cacaccaccg acatttgcca tttatgtagc aaaattagta tttgaatgga
    17881 ttaaggagca aggtggcgtt gctggaattg aagcgttgaa tcgcaaaaaa gcggccttat
    17941 tatataatta tattgatcaa tcggatttct tttcttcacc ggtcgaacct tctgctagat
    18001 cgctcacgaa tgttcctttt gtgacgaatt cagcggagtt tgataaagct tttgttcaag
    18061 aagctgaagc aaatggtttt aaaaacttga aaggacatcg ctcagtgggc ggtatgcgag
    18121 caagtcttta taatgcattt ccaattgaag gggtggaagc tctaatcgcc tttatggaaa
    18181 aatttgcaaa tgcaagaaaa gggggagaag tacgtgttta atatccaaac gtttaatgct
    18241 atcgcaaaag aaggcttaaa gacatttgat ctcgaaaaat atgtgattga tgcaaatcag
    18301 ccagcagacg ggattttact acggagttac aacttacacg attttgactt tccggagaca
    18361 gtgaaggcag ttgcccgagc tggtgcagga gttaataata tcccagtaga aaattgttct
    18421 gaaaaaggta ttgttgtatt caatacacct ggcgcgaatg ccaatgctgt gaaagaacta
    18481 gttcttgcga gtttattcgt ttcggcgcgc ccaattttgg aaggaacgga atgggtcaaa
    18541 gaactgccgg ctgaagatga tgtcgagcag aaagtcgaag ctgggaagaa agcctttgcg
    18601 ggaacagaac ttgctggcaa aaaacttggg attatcggtc taggcgcaat tggtgcattg
    18661 gtagccaatg acgctttatc gcttgggatg gatgtggttg gatacgatcc attcgtttca
    18721 gtagacacgg cttggagaat ttctaaagaa gtggaacgtg cgatgacgat agaagaagtt
    18781 ttggccacat gcgattattt aacagttcat gtgcctttaa cggataaaac acgtggcatg
    18841 tttaacgcag atacactaca attagtgaag gataatgctg ttttattaaa cttttctcgt
    18901 ggtgagttag tggattcagc ctctgtgaaa gaagctttag atgatggact tttacgttta
    18961 tatattacag atttcgcgac aaaagaatta ctaaaccaca aaaaagtgca tgtatttcct
    19021 catttaggtg catcgacgga agaagccgaa accaactgtg ctaaaatggc tgcgaaagaa
    19081 ctgcaatcat atcttgaaac aggtagtatt aaaaactcgg ttaattttcc gaacgtggaa
    19141 atgccgtata atggacatcc gcgaattgga atttgtcaca aaaacattcc taatatggtc
    19201 ggacaaatta cgacggagct agggaaatat tcgttaaaca ttttagatat gataaatcgc
    19261 agtaaaaatg aatatgccta cacattaatt gatattgata aggaaacgca agctaatttg
    19321 gaacaactga aaagtgattt attagctgtg caaggggttt tgcgtgttcg agttattgaa
    19381 ccattaggtg ttacggttta aaattattac ccgggaaata atgagagcat gaaactttat
    19441 ggttattgcc agacgggttc atgctctttt actaaaaagg aggataacaa tggtaaatat
    19501 acgtccattt aaagcaattc gtccgattaa aaatttagcg gaaaaggtgg cttccttgcc
    19561 atatgatgta cttaattcgg aagaggcgcg cgaacttggt gatgcaaata agtattcttt
    19621 tttacatatt gataaggcgg aaattgattt agatccggcg gtttcccctt acgacccagc
    19681 tgtttatcaa aaagcagcgg ataatttgga acaatttgag ttggatggtt ggcttggtag
    19741 agaagcaaac ccggcatttt atatttatca actgacgatg gatggtcgcc cgcaaacagg
    19801 gctggttgtt tgtacgtcga ttgatgatta taccaatggg aaaattaaaa aacatgagtt
    19861 aactcgtgaa gagaaagagt tagaccggat tcgtcatgta gatgtttgtg atgcaaatac
    19921 aagtccgatt ttccttactt atcgtggaaa agaagcaatt aatgcacttg ttgagtcttg
    19981 ggtgaatgaa aatgagcctg aatatgactt tgagagcttc cacggggtcg cgcataaggt
    20041 ttgggcaatt acggacgcac atattttaga agacctgtca gcggcgttct cggaagtccc
    20101 agcgctatat atcgcagacg gtcaccatag aacggaatct gctgtgaaag ttggtttgaa
    20161 acggcgcgag gaattcccag aggctgggcc agaagcagaa tttaatttct ttttatcagt
    20221 tgttttccca gaagagcaat tagaaattct tgattataat agggttgtga atgtgccaat
    20281 tgaagcggat ttccttagca aagtagaggc tagttttgac gtggagaagg ttggaaaaga
    20341 agcatttaaa ccagagaagc caaaacaagt agggatgtat ttagatggaa attggtacaa
    20401 acttacggcg aaaagcgaag tgattccaaa cgatgttatt ggtcagctgg atgtttcaat
    20461 attacaatcg caagttttaa cgccaatttt tgggattgaa gatattcgcc gtgataaccg
    20521 cattgatttt gtcggcggaa tacgtggact gagcgagcta gcgcgtttag ttgataatgg
    20581 cagtcattca gtggcatttg cgatgtaccc gccgacaatg gacgatttac ttagtgtagc
    20641 agatgccgca gaaatcatgc cgccaaaatc gacttggttt gaaccgaaat tattaagtgg
    20701 gctgtttgtc catgatttag aaagtaaata att
//
LOCUS       DABQVC010000027        20194 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.027,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000027 DABQVC010000000
VERSION     DABQVC010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20194
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.027"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..953
                     /locus_tag="IBJ56_000714"
     CDS             <1..953
                     /locus_tag="IBJ56_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HAM3416978.1"
                     /translation="IYCAGMLANLLVFSFLLRKLIEKVNISRFVEHRKYAYIIFSIVA
                     LTVLAFYMNIYAGSIAGFDGSVLKINTLIFTGYTILLIVIVTVVINTATNELKVQNQK
                     EQLEQLQDYVTTLESLHREMRVFRHDYVNILSTLVGYIDNNDMPGLKYYFENNIVPIN
                     KTIESNNYKISLLQNIHVIELKGLLAVKLIRAQELKIDAILEVVEPIDKISMDSIDLC
                     KVVGILLDNAVEAALTCENPVIRIAFVKKGDSIIIVFANSLPVNMPPIYKIFEEGFST
                     KGEGRGLGLASLREIMKKYSHVALDTKVTDREVIQELEIM"
     gene            972..1700
                     /locus_tag="IBJ56_000715"
     CDS             972..1700
                     /locus_tag="IBJ56_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3416979.1"
                     /translation="MLPVFICEDNRMQRERLTKYIEDYIMVEHFDMKLELSTGDPFEL
                     VSRMPTHQGMGLYFLDIDLGQPDMNGFELAQEIRKFDPRGFIIFITTHAELSYMTFTY
                     KVEALDYIIKDDIDLLHDRVLACMKQAEERISNDQDMQKYFTFKVSDKKIIHELLDDI
                     LFFETAPTIHKVILHGKNRQVEFYGKLKNIEKMLDESFYRCHRSYIVNKKNIHELDTT
                     KGVVKMSNGENCYASSKLIKSLSL"
     gene            1867..3840
                     /gene="pdeA"
                     /locus_tag="IBJ56_000716"
     CDS             1867..3840
                     /gene="pdeA"
                     /locus_tag="IBJ56_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP phosphodiesterase PdeA"
                     /protein_id="HAM3416980.1"
                     /translation="MSGYFQKRMLKYPLYGLIAATIILSVITFFFSWWLSALVVVGGI
                     ILTVAMFYFEYRLNEDVQLYVSNLTYRIKRSEEEALVEMPMGILLYDEHYKIEWVNPF
                     MSKYFDKAELIGESLEEVGPEFLDVITGNDEKGIMSIAWRDHRFDTIVKRKERILYLY
                     DRTEYYDLNKKFQANKSVFAVIFLDNYDEWAQGMDDRRRSALNNLVTSMLTNWAREHR
                     IYLKRISTDRFMAFLTEEMLKRLEEEKFQILDRIRERTSKQNIPLTLSIGIGYKEDDL
                     IQLADLAQSSLDLALGRGGDQVVIKQPEGKVRFYGGKTNPMEKRTRVRARVISQALQE
                     LITQSDQVFVMGHRYPDMDVIGSSLGVMRIAEMNDRNAYVVVEPGKMSPDVKRLMNEI
                     EEYPNVIKNIVTPQVALENITEKSLLVVVDTHKPSMVINKELLDSATNVVVVDHHRRS
                     EEFVGSPVLVYIEPYASSTAELITELFEYQPDLEQVGKIEATALLSGIVVDTKNFTLR
                     TGSRTFDAASYLRSLGADTILVQQFLKEDITTFTQRSRLVESLEIYHDGMAIATGHED
                     EEFGTVIAAQAADTMLSMEGVQASFVITLRPDKLIGISARSLGQINVQVIMEKLGGGG
                     HLSNAATQLKDVTIAEAEKQLISAIDAYWKGET"
     gene            3843..4289
                     /gene="rplI"
                     /locus_tag="IBJ56_000717"
     CDS             3843..4289
                     /gene="rplI"
                     /locus_tag="IBJ56_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HAM3416981.1"
                     /translation="MKVIFLKDVKGKGKKGETKNVADGYANNFLIKNGYAVEANNAAL
                     STLSAQKKKEDKLAAEELAEAKALKEKMENLTVELKAKSGEGGRLFGSITSKQIAQTL
                     EKTHGIKIDKRKMDLPEAIRTLGHTKVPVKLHHEVTATLDVHVSEE"
     gene            4314..5666
                     /gene="dnaB"
                     /locus_tag="IBJ56_000718"
     CDS             4314..5666
                     /gene="dnaB"
                     /locus_tag="IBJ56_000718"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HAM3416982.1"
                     /translation="MDNNFQDRTPPQNIEAEQAVLGAIFLEPNALITASEILMPDDFY
                     RTGHQIIFETMLDLNDHGKAVDVLTVYEALAAKGNLEDAGGLPYLTELSGAVPTAANL
                     EYYAHIIEDKALLRRLIRTATQIATDGYSREDELDMLMDEAEKSILEVSQRKNVGAFK
                     NIKDVLVKTYDDIEILHNRKGDITGIPTGFNELDKMTAGFQRNDLIIVAARPSVGKTA
                     FALNIAQNVATKTDENVAIFSLEMGAEQLVMRMLCAEGNINAQNLRTGALTSDDWQKL
                     TIAMGTLSNSGIYIDDTPGVRVNEIRSKCRRLKQETGLGMIVIDYLQLIAGSGRGGEN
                     RQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADI
                     VAFLYREDYYDREGENDGTIEIIIAKQRNGPVGDVKLAFVKEYNKFVNLEVRYDDAMA
                     "
     gene            5925..7217
                     /locus_tag="IBJ56_000719"
     CDS             5925..7217
                     /locus_tag="IBJ56_000719"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HAM3416983.1"
                     /translation="MSSVVVVGTQWGDEGKGKITDFLSENAEAIARYQGGNNAGHTIK
                     FDGVTYKLHLIPSGIFYKEKISVIGNGMVVDPKALVEELKYLHDKGVDTSNLRISNRA
                     HIILPYHIRIDEADEERKGANKIGTTKKGIGPAYMDKAARVGIRIIDLLDKETFKEKL
                     EHNLGEKNRLLERFYELEGFKLEDILEEYYDYGQQFKEYVCDTSVVLNDALDDGKRVL
                     FEGAQGVMLDIDQGTYPFVTSSNPIAGGVTIGSGVGPSKINHVVGVAKAYTTRVGDGP
                     FPTELFDTIGDTIREVGHEYGTTTGRPRRVGWFDSVVVRHARRVSGLTDLSLTLLDVL
                     TGIETLKICVAYKLDGKTITEFPASLKDLARCEPVYEELPGWTEDITGVTSLDDLPVN
                     CRHYMERIAQLTGVQVSMFSVGPDRAQTHVIKSVWRLA"
     gene            7520..7813
                     /locus_tag="IBJ56_000720"
     CDS             7520..7813
                     /locus_tag="IBJ56_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WXG100 family type VII secretion target"
                     /protein_id="HAM3416984.1"
                     /translation="MSGQIRMSPSELRDCAKTYGQSGRDIEDILSRLSQLQEQLRSEW
                     EGQAFVRFDDQFEQLKPKVTEFANLMDQINDQLEKTANAVEEHDQQLSQNFGF"
     gene            7962..11168
                     /gene="esaA"
                     /locus_tag="IBJ56_000721"
     CDS             7962..11168
                     /gene="esaA"
                     /locus_tag="IBJ56_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EsaA"
                     /protein_id="HAM3416985.1"
                     /translation="MKKVKWSILLFLVLAIFLSAGITYLALNQSSNKESKNNSEKTHK
                     MTIALVNEDQGDNFQGKQVEFGNQFVKSIEKDDTHEWYVVSRGVAESGLKRDVYNMMI
                     VIPSDFSEKAMSMTSSAPEKVTISYKVNDVGNSDLKAEAEKTAASVLEDFNSRIIDVY
                     FASILTTLQEAQDNIGTLVKEEKKYDAIYNKDVNNPLSSYTKQFKTVQDYTGTSKESF
                     QGFQDIMKEFEESLNLSQKENEEHMKNMDAYTKTQEENAPFGAEFTENLSKFDGTLSA
                     EDIRMQTAALEQANAKMTSEFQILEDSNSLLSQTQALQSYIAETNARIDAVDAEIMGT
                     LENDFRTAVYNDLLRILRENEYSDKLNEIGLKDLTGEDINAGFNKMIVKEIQSLPTYN
                     ADQLASIGLDEEMYKNVVTLSKEYYSNHRSAFGEGFSFTTDPKTLPTDTLKSDTINRL
                     KSEGVTLESSSYTVEGSDYPTEIILTLDENFTFSDVDCLVNGSSNPELVQQTAYGENG
                     IKLSIQALGSTPAEIKITGKAKLREGVNVPLIGAVNWNATLQQYEKKEYSEMPTIPSE
                     LDPTTPDTSLIVRKEPVPIKVTAPTYLNETKSSVKAITNTVKDYYKLQALFDLYYGID
                     ASDSGQIPDFSNYQVTLENSAKASSYYYIFNKEDVIGSFVNLTTDRFVADYTKKIKAF
                     EKRIDDYKNTMAEANSRSEDVTNRLNETTQEAINLNTNLALTLQNLESWREASKGLIE
                     ENGVVLEKSGEEATMALQLSSEFAGLLAESESLAGTSEGNLKSAEVVYKTFDAIDKEA
                     KNIQQSGETLVKEASTLSDDLSEKLEDDETFQKNFAKVMENSRVGDRQNENLYSFLSS
                     PVDKMNAGTIVAGDKSMPYFMILICTILAIFTSYVISHQEKKREQLNEFEKEMSLVFK
                     NIPITFLAICVGIIEGLIIGAISGFIFEVGEIGMFLWIGVCVLIMMTLVTAFSYLLRQ
                     FNMIGMSIILLVLSLYLFLTDAVGLNIDNESIFATFRTFSPLQYMEYLLNGILSAQKD
                     YIIVVYSLIGAALLFTGLNLFVWHRSKEEVEEDDSDEI"
     gene            11158..11673
                     /gene="essA"
                     /locus_tag="IBJ56_000722"
     CDS             11158..11673
                     /gene="essA"
                     /locus_tag="IBJ56_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssA"
                     /protein_id="HAM3416986.1"
                     /translation="MKFKIAALLMLLCFAFAPGVLAADSDSYLENNGKMDIKTDRLQK
                     TEEEKTKELEQMEETELDKNGIPLFTDEMDEKIAKEKAAEKAEYDRIKDSLFEEESTS
                     GETVKKTKEKLFTDEYETTAVNTETPTTTETTVEDETKKTKQKTVGGAIAGTLVALAG
                     GIYVAARNVFE"
     gene            11691..11942
                     /locus_tag="IBJ56_000723"
     CDS             11691..11942
                     /locus_tag="IBJ56_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416987.1"
                     /translation="MAKNTHMNVTVDFTNWGASKYDLRIPVHQPIKALIINLAETLKI
                     DYKDLSKCTIKTTNKAILLSDDDKLTNFQIADGDILEIL"
     gene            11964..13160
                     /gene="essB"
                     /locus_tag="IBJ56_000724"
     CDS             11964..13160
                     /gene="essB"
                     /locus_tag="IBJ56_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssB"
                     /protein_id="HAM3416988.1"
                     /translation="MNKTIEMDGTTYDFTYEDLVWSITFPKSKTRAKELAQLELLEKP
                     ATHFTPAKISSDSDSYTISYEIAKRTYGFEQVRKMGREDKLRALRNIADLGELLNTRY
                     TFFLHPDNLIFDINLVPSIVHRGIKNILPPYELTEETFFKQYQCFVIAMFSKKFSFEN
                     LYNGSLSGARGTQFEKSILDAKTVQDIATILEEAYVKEHAAVQKNMASVPKKKYSTFR
                     GLAVGFIIVAILLAIPVSYFAFVKVPLQNDLLTANENFLKTDYDKVITGLENVDPEKM
                     PQSVQYELAYSYVKGEKMSDKKKENIMNTISLKSDAKNLLYWIYNGRGEFSKSLDIAK
                     LLDDPTLAMYSLTKQIEQVQSDTTLSGDEKVEKLKTLEESLKEYDEKVNESTTTEDET
                     TNTEAK"
     gene            13174..17670
                     /gene="essC"
                     /locus_tag="IBJ56_000725"
     CDS             13174..17670
                     /gene="essC"
                     /locus_tag="IBJ56_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssC"
                     /protein_id="HAM3416989.1"
                     /translation="MNREALLIVSNGQQCHKNHLSPEKVVTIGNTIEHEITYPELAEA
                     IEVKYDEGSWNAGTTALQANQAVNVENLAFYLCQDLHTQVYDVVTNISVTFGVGIEND
                     VTLDDTKSDFILLRDAKEKLFKLQVLNGEVYHNFSLVTEDCVLEPGDQLYTDGVTITI
                     GKEDISVLAVKNRVTSKLAPLFAADNSFGEDYPDYHRSPRIIYRAPEEKISMAKPSSK
                     PSKPTDGLIKIILPPLIMVAITVMISIFQPRGLYIIMTIAMSAVTITMAILNYIKSRK
                     KYKIDSKQRVESYDLYLKRKTKELHETSEKQRHALTYHYPDVTELEKMALRVDSRIYE
                     KTMFHHDFLTFRVGRGDEASSFSVEFQQEEFSQEKDELVEEAVKIKGQYLSINEVPVA
                     TDLMHGPVGYIGPRRLVLEQLQMLVMQTSLFHSYYDLQFITIFPEEEKADWDWMRWLP
                     HANMRDVNVRGFVYHERSRDQVLNSLYQILKERKQALTEQASKQEKLYFTPHYVVLIT
                     DEKLVLDHTVMEFFNEDPSELGVSLVFVQDVMESLPEHVKTVVDIRDAKSGNIILEQG
                     DLVNRAFVPDHLPADFDKEVISRALAPLNHLQNLKNSIPESVTFLEMYGVERVEELNI
                     AGRWAKNETYKSLAVPLGLRGKDDIVQLNLHEKAHGPHGLVAGTTGSGKSEIIQSYII
                     SLGVNFHPYEVAFLLIDYKGGGMANLFKNMPHLLGTITNLDGAQSMRALASIKAELQK
                     RQRLFGEHDVNHINQYQKLYKQGKATEPMPHLFLISDEFAELKSEQPEFMKELVSTAR
                     IGRSLGIHLILATQKPSGVVDDQIWSNSKFKLALKVQNASDSNEILKTPDAAEITLPG
                     RSYLQVGNNEIYELFQSAWSGADYVPDKESTDYIDTTIYAINDLGQYDILTEDLSGLD
                     KKDDLTKLPSELDAVIDHIHAYTEASGIEALPRPWLPPLPERIFAQDLHPVNFEEAWK
                     EPKKPLQATIGLLDQPELQAQVPLTLDLTKDGHVAVFSSPGFGKSTFLQSLVMDLARQ
                     HNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQKFLRICLNEIKTRKKLLS
                     QYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDFEKIITQITREGASIGMFM
                     IISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDTPLEEYPGRALVKLETVT
                     TFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIPEKIKLADFCEWMETK
                     EVVANGNIPIGVDFEYVKPVGIDYKQTGVLIIADVIGRNLVSINKNVANSLVQNPNIS
                     LLISDTANFDLVEMSTKANLYSNNTEDLKQNMKKVLSIYQSRTEKADELRKAGDNLGV
                     TAMIQGLKDIVAFVGDYDILLKTLDEEDQKVLIDMINNGKTYGCYLILSGSIQAFKGY
                     GDLNKAVQAQRNYIFFDRLSNSSPFSFSFNIYREQELLPEEGYVIAGQEWQKIKIAKY
                     EEEV"
     gene            17676..17993
                     /locus_tag="IBJ56_000726"
     CDS             17676..17993
                     /locus_tag="IBJ56_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4176 domain-containing protein"
                     /protein_id="HAM3416990.1"
                     /translation="MLTKEILPIGSVVYLKESLKKVMITSRLITIQGDEEKEFYDYGG
                     VVYPEGTKDDNILAFDAEDITDVKFRGFVDDDEVVLVKRMREWQKEEFGVSPEEEDEM
                     LEL"
     gene            17983..18417
                     /locus_tag="IBJ56_000727"
     CDS             17983..18417
                     /locus_tag="IBJ56_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416991.1"
                     /translation="MNYDERVRVLIELKVDLSGKLEMMENEEALLCRQKHDFASAWSN
                     AKTEDAYRKLNEAVRKKIKETTEYAREIDEKITARIKRIEAAYKAEYQSNRSYTWRIA
                     EIDPIKFKEKYNERLNQLSYLSCDGSVKTRLIKEFRQNNFLK"
     gene            18429..18737
                     /locus_tag="IBJ56_000728"
     CDS             18429..18737
                     /locus_tag="IBJ56_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416992.1"
                     /translation="MVSPMPDKTVKMDKGSINPKLDKLISSLDNFDNINKKMGTIVGS
                     QEISGEAADALSESLLVLVSYGEQYSLVIRNLKEVIVDYCKSVEEIDKTAANAVSKGV
                     "
     gene            18756..19397
                     /locus_tag="IBJ56_000729"
     CDS             18756..19397
                     /locus_tag="IBJ56_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416993.1"
                     /translation="MKSRNWLKGLGVTMIVVTLILTGCGNGDAEKTDTKEQTKSVEEE
                     GKEVKIESNEGKPQHEQLITVKLPPEAEYLNDETLEVYEQDKKKYDQTEQLITNNSVT
                     ILLGDFCYYEPAWSSLTCSAILVNGTDTNIEDLSFKAEIMNKPMSGKIFSDDKVPELT
                     KAKTGKFQPNEGIPIILVFSEENPKNEENAEPQKINIKDIKVKIKDIQYKAVK"
     gene            19409..19723
                     /locus_tag="IBJ56_000730"
     CDS             19409..19723
                     /locus_tag="IBJ56_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin B"
                     /protein_id="HAM3416994.1"
                     /translation="MAKEIKVNPDFLKKVESNVTNYIDAQKEVSVELLAVRTNLASNF
                     SGIACDEIKNYITELMNDLEKEFGVFITRNHEKVKALRESYKELDGQLGQTFNYGMER
                     TK"
     gene            19720..>20194
                     /locus_tag="IBJ56_000731"
     CDS             19720..>20194
                     /locus_tag="IBJ56_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3416995.1"
                     /translation="MSGKIKFNIAEAQNISLELKIAAGRYTQETEELLKVLKNNSLCD
                     KDQDVVEQRGRIEKNNQRLIEYKKFINTNLSKSNSVIEELFMSVEVLYAQQVSEFRNP
                     NSAGYKELMGNVKAISYQKISQISGLGEMLTSKGSVGAIKDIRDTLLGTLVDDTYL"
BASE COUNT         7010 a         3087 c         4463 g         5634 t
ORIGIN      
        1 taatttattg tgcgggaatg ttggcgaatt tgttggtatt ttcgtttctt cttagaaaat
       61 tgattgaaaa agttaatatt tctagatttg tagaacatag aaaatatgca tatattattt
      121 tttctatcgt tgctcttact gtcttagcat tctatatgaa catttatgcg ggatcaatag
      181 cgggattcga tggatcagtt ttgaagatta atacccttat ttttacaggg tacaccattt
      241 tgttaatagt tatagtgacg gttgttatta atacagcaac caacgaactt aaagtacaga
      301 atcagaagga gcagctagaa cagttacagg attatgttac tacattagag tccctgcata
      361 gagaaatgcg cgtttttcgt catgattatg tgaatatcct gtcaacactt gttggatata
      421 ttgataataa tgatatgccg ggtttgaagt attactttga aaataatatt gtacctataa
      481 ataaaacaat tgaatctaac aactataaga tttctttgct tcaaaatatt catgtgattg
      541 aactaaaggg tttgctagct gttaaattaa tacgagctca agagttgaaa attgatgcaa
      601 ttttagaagt agttgaaccg attgataaga tttcgatgga tagcatagat ttgtgcaaag
      661 ttgtcgggat tttgctagat aatgcggttg aagcggcgct aacttgtgaa aatccagtta
      721 tacgaatcgc ttttgtgaaa aaaggtgata gtataattat tgtatttgcg aatagtttac
      781 cagtaaatat gccaccgatt tataaaatat ttgaagaagg tttctctaca aaaggagagg
      841 gtcgtggatt aggccttgct agtttgcggg aaattatgaa gaaatattcg cacgttgcct
      901 tagatacgaa agtgaccgat agagaagtta ttcaagaatt agaaattatg tagaagaatg
      961 gggatgaatt tatgctaccg gtttttattt gtgaagataa cagaatgcag cgagaaaggt
     1021 taacgaaata tattgaagac tatattatgg ttgaacattt tgatatgaag ttagaacttt
     1081 caacaggaga tccgtttgag ttagtatcac gaatgcctac acatcaaggt atggggcttt
     1141 attttttaga tattgattta gggcagccgg acatgaatgg ttttgaatta gctcaggaaa
     1201 ttcggaagtt tgatccgcgt ggtttcatta tttttattac aacacatgcg gagttaagtt
     1261 atatgacttt cacgtataag gtggaagcgc ttgattacat tattaaagac gatattgatt
     1321 tgctgcatga ccgggtactt gcctgtatga agcaagcaga agaacggatt tccaatgatc
     1381 aagatatgca gaagtatttt acgtttaaag tgtcggataa gaagattatt catgaacttt
     1441 tagacgatat cttatttttt gaaacagccc caactattca taaagtaatt ttacatggca
     1501 aaaatcgcca agtggaattt tatggtaagt tgaagaatat cgagaaaatg ttggacgaat
     1561 cattttatcg gtgccacagg tcgtatattg tgaataagaa aaatattcat gagctggata
     1621 cgacaaaagg tgtggtgaag atgtctaacg gtgaaaattg ttacgcatca tcgaaattaa
     1681 ttaaaagctt gagtttataa aagtggcctt aaaggtcgct ttttttgtac agtggcaagt
     1741 ttggatttga tgaaatgggt aaatataggt aaaataatag tgatgaattg ttagttaagt
     1801 ttatgttatg atatagatac tcaaattcag acaaaaggta tgtaaaaaaa tggggagctg
     1861 gatgaaatgt caggctattt tcaaaaacga atgcttaaat atccactata cggtctgatt
     1921 gcagcgacaa ttattttgag cgtaatcacg ttcttttttt cgtggtggtt atcggcgtta
     1981 gttgttgttg gcggaattat tcttacggtt gcgatgtttt attttgaata tcgcttgaat
     2041 gaagatgtgc aactatatgt ttctaattta acgtatcgga ttaagcgtag tgaagaagaa
     2101 gcgcttgttg agatgccgat gggaatactt ctgtatgatg aacattacaa aatcgaatgg
     2161 gttaacccgt ttatgtcgaa atactttgat aaggcagagc taattgggga atctttggaa
     2221 gaagtaggac ctgaattttt ggacgttatt actgggaatg atgagaaggg gattatgtcg
     2281 attgcttggc gtgatcaccg ctttgatacg atagtaaagc gtaaggaacg gattttgtat
     2341 ttatatgacc gaacagaata ttatgattta aataagaagt ttcaggcgaa taaatctgtt
     2401 tttgcggtta ttttcttaga taattatgat gaatgggcgc agggcatgga tgatagacgt
     2461 cgcagtgctt taaataattt ggtgacgtcg atgttgacta actgggccag agaacatcgt
     2521 atttatttga aacggatttc gacagaccgc tttatggcct ttttgacgga ggaaatgttg
     2581 aagcggttgg aggaagagaa gtttcaaatc ttggaccgga ttcgcgaacg gacgtcgaag
     2641 caaaatattc cattaacgct tagtattggg attggttata aggaagatga tttgattcag
     2701 ctggccgatt tggcacagtc tagtctggac cttgctttag ggcgtggcgg agatcaggtc
     2761 gtaattaagc aacctgaagg aaaagtgcgt ttttatggcg ggaaaacaaa tccgatggaa
     2821 aaacggactc gtgttcgcgc acgtgttatc tcgcaagcct tgcaagagtt gattacgcaa
     2881 agtgaccaag tttttgttat ggggcaccgc tatccggata tggacgtaat tggttcgagt
     2941 cttggagtga tgcggattgc ggagatgaat gatcggaatg cttatgtggt cgtggaacct
     3001 ggcaaaatga gtccagatgt gaagcgatta atgaatgaaa ttgaagaata tccaaatgtg
     3061 attaaaaata tagttacacc gcaagtcgcg ctagaaaata tcacggagaa gagtttgctt
     3121 gtggttgttg atacgcacaa accttcgatg gttattaata aggaattgct tgactcggct
     3181 acgaatgtgg tggttgtcga tcaccatcgt cgttcagagg aatttgttgg aagcccggtg
     3241 cttgtttata tcgaaccata tgcgtcatct actgccgaat tgattacgga gctgtttgag
     3301 tatcaaccgg atttagagca ggttgggaaa atcgaggcaa cggcgcttct ttccgggatt
     3361 gtggttgata cgaagaactt tacgctacgg actgggtcgc gaacgttcga tgcggcgagc
     3421 tatttacggt cgcttggtgc ggacacgatt ttggttcagc aatttttgaa ggaagatatt
     3481 actactttta ctcagcggag tcgtttagtt gagtcgcttg aaatttatca tgatggtatg
     3541 gcgattgcga ctggacatga agacgaggaa tttggcacag ttatagctgc gcaggcggca
     3601 gatacgatgc tttcgatgga aggcgtgcag gcatcctttg ttattacgct acgtccggat
     3661 aaattaatcg ggattagcgc gagatcgctt ggtcaaatca atgtgcaagt cattatggaa
     3721 aaactaggcg gtggcggaca tttatcgaat gcagccacac agcttaaaga tgttacaatt
     3781 gcagaagcag aaaaacaatt aattagcgcc attgatgcgt attggaaggg agaaacataa
     3841 ttatgaaagt tattttcttg aaagacgtaa aaggtaaagg taaaaaaggt gaaactaaaa
     3901 atgttgctga tggttatgca aacaattttt taattaaaaa tggttacgca gttgaggcta
     3961 ataatgcggc tttaagcact ctttcagcgc aaaagaaaaa agaagataaa ttagctgctg
     4021 aagaactagc tgaagcaaaa gctttgaaag aaaaaatgga aaatttaaca gtggaattaa
     4081 aagcgaagtc tggtgaaggc ggcagattgt ttggttctat tacatctaaa caaattgctc
     4141 aaacgcttga aaaaacacat ggtattaaaa tagataaacg taaaatggat ctaccagagg
     4201 caattcgaac tttagggcat acgaaggtgc cggtgaagtt gcaccatgaa gtaacggcaa
     4261 cacttgatgt acatgtgagt gaagaataat ttttcttaag ggagcgtaag acagtggata
     4321 ataatttcca ggacagaaca ccaccacaaa atattgaagc cgaacaagct gtactgggcg
     4381 cgatatttct tgagccaaat gcgctgatta ccgcttctga aattttaatg ccggatgatt
     4441 tttatcgaac tggtcaccaa atcattttcg aaacgatgct tgatttgaac gaccacggga
     4501 aggctgtcga tgttttaaca gtatatgagg cgcttgctgc caagggtaat ttagaagatg
     4561 cgggcggttt gccttatttg acggaattat ccggtgctgt accgactgcg gctaacttgg
     4621 aatactatgc ccatattatc gaggacaagg cgcttctaag acgtttaatt agaactgcta
     4681 cccaaattgc aacagatgga tattcgcgcg aagacgagct cgatatgctt atggacgaag
     4741 cggaaaagag tatcttggaa gtttcgcaac gtaaaaatgt tggtgcattc aagaatatta
     4801 aagatgtcct agttaaaact tatgatgata ttgaaatttt gcataatcgc aaaggtgata
     4861 ttactgggat tccaactgga tttaacgagc tggataaaat gacagctgga tttcagcgga
     4921 atgatttaat tattgttgcc gcgcgtcctt ctgttggtaa aacagcattc gccctaaaca
     4981 ttgcgcaaaa tgttgcaacg aaaaccgacg agaatgtggc catttttagt ttggaaatgg
     5041 gtgcggaaca acttgttatg cggatgcttt gtgcggaagg aaatattaat gcgcagaatt
     5101 tacggacggg tgctttaacg agcgatgatt ggcaaaagct gacaatcgcg atgggtacac
     5161 tttctaattc ggggatatat attgatgata cgccgggtgt tcgggtgaat gaaattcgtt
     5221 ccaaatgtcg ccgtttaaaa caagaaactg gtcttggtat gattgtgatt gattacttgc
     5281 aactgattgc agggagcggt cgtggtggcg aaaatagaca acaagaagtt tctgaaattt
     5341 ctcggtcgtt aaaagctttg gcgcgagaac ttgaagtgcc agtaattgca ctttcgcagt
     5401 tatctcgtag tgtagagcaa cgtcaagata aacgcccaat gatgtcagat attcgtgaat
     5461 ctggttcgat tgagcaagat gccgatatcg tagccttttt ataccgggaa gattactatg
     5521 accgggaagg tgaaaatgat ggcacgattg agattattat tgcgaaacaa cgtaatggtc
     5581 cagttggtga cgtgaaacta gcctttgtaa aagaatacaa taagtttgtg aatttagaag
     5641 tgcggtacga cgacgcaatg gcttaatgag gaaaccttgt gaaattcaaa ttagatttgg
     5701 agttcgcaag gtttttattt tatgcaaaaa ggtaacgtat tactattaat gtactttgaa
     5761 attcccgtaa aaagattaaa aaagcgaacg ataaaattac cttacaaatc aatgttcgta
     5821 aatccattga ctattttagt ggcaaacggt acaatgtata gtggaaaatg aagaggctat
     5881 gaaaaacgca tagctatcaa agaccaatta aatgaggtgt ttaaatgtct tcagttgttg
     5941 tagtaggaac acagtggggc gatgaaggaa aagggaagat tacagatttt ctttccgaaa
     6001 atgcagaagc gattgctaga tatcaaggtg ggaacaatgc aggccataca attaagtttg
     6061 atggcgtaac gtacaaatta cacttaattc catcaggtat cttttacaaa gaaaaaatta
     6121 gtgtcattgg taacggtatg gttgtggatc caaaagcttt agtggaggaa ttaaaatatc
     6181 ttcatgacaa aggcgtggat acttctaatt tgcgtatttc taaccgtgcg cacattattt
     6241 taccatatca cattcgtatt gatgaagctg acgaagaacg taagggcgca aacaaaatcg
     6301 gtacaacgaa aaaaggtatt ggcccagctt acatggataa agcagcgcgt gtaggtattc
     6361 gtattattga tttattagat aaagaaacat ttaaagagaa attagagcat aatcttggcg
     6421 agaaaaaccg tttattagaa cgtttttacg aactagaagg ctttaaacta gaagatattt
     6481 tagaagaata ttatgactat ggtcaacaat ttaaagaata tgtttgcgat acatctgttg
     6541 ttttaaatga cgcattagat gatggtaaac gtgtattatt tgaaggtgcg caaggggtta
     6601 tgcttgatat tgatcaagga acatatccat ttgtaacttc aagtaacccg attgctggtg
     6661 gcgtaactat cggtagtggc gtaggtcctt caaaaatcaa tcatgttgtt ggtgtggcga
     6721 aagcttatac aacacgtgtt ggtgatggtc ctttcccaac agaattattc gatactattg
     6781 gggacactat ccgtgaggtt ggtcatgagt atggtacaac gactggtcgt ccgcgccgtg
     6841 taggttggtt tgacagtgta gtggttcgcc atgcgcgtcg tgttagtggc ttaacagatt
     6901 tatcgttaac actactggat gttttgacag gaattgaaac acttaaaatc tgcgtagctt
     6961 acaaattaga cggaaaaaca attacagagt tcccggcaag tctgaaagat ctagctcgtt
     7021 gcgaacctgt atatgaagaa cttccaggct ggacggaaga tattactgga gttacatcac
     7081 tcgatgatct tccggtgaac tgccgccatt acatggagcg tattgcacag ctaactggtg
     7141 tgcaggtttc tatgttctct gtaggccctg atcgcgctca aacacatgtc attaaaagcg
     7201 tttggcgttt agcttaataa aataaatatc aagcccatct aaggtgtatt cttggatggg
     7261 cttttttgct gtataaaaat aatagtgatt ctggaaaagt atacaatttt ttatccgaaa
     7321 aattgaaaaa gttaacaaaa ggggaaggtg tttgtgaaaa aggcatcttt ttgtatagtg
     7381 atgttgtttt taaaagacct attatcaagt ctttatagga gttttattcg tatttttgtc
     7441 acattttact ttgtgaattc atgttataat ttgagagtga tatcttattc acaatagata
     7501 ataagaggag atgaagtgaa tgtcaggtca aattcgtatg agtccaagcg aactacgtga
     7561 ttgcgcgaaa acttacggtc aaagtggtcg ggatattgag gatattctaa gtcgtttaag
     7621 tcaactacaa gaacaactac gtagcgaatg ggaaggtcaa gcttttgtgc gttttgatga
     7681 tcaatttgaa caattaaaac caaaagtaac tgaattcgca aacttaatgg atcaaattaa
     7741 cgatcaactt gagaagacag caaacgcagt agaagagcac gatcaacaac tttctcaaaa
     7801 cttcggattc taaaatcaac aaaaagtggg gcatacatac aaatatcgtt ggatgcttta
     7861 cgaaaagcca tgcagttttt tgcatggctt tttctaaaca tagaaagctt atgcctaaaa
     7921 aggtatttat ataaaaaaga cacagcggga gtgggacatg aatgaagaaa gtaaaatgga
     7981 gtattttact ctttttagtc ttggcgattt ttctttcggc aggaattact tatttggctt
     8041 tgaatcaaag ttcgaataag gagtctaaaa ataatagtga aaaaacacac aagatgacca
     8101 tcgcactcgt aaatgaggac caaggagaca acttccaagg gaaacaagtg gagtttggta
     8161 atcaatttgt taaaagtatt gaaaaagatg atacgcatga atggtacgtt gttagccgcg
     8221 gagttgcaga aagtggctta aaacgagatg tatacaatat gatgatcgtt atcccgagtg
     8281 acttttctga aaaagcaatg tcaatgactt cgagcgcccc ggaaaaagtg acaattagct
     8341 acaaagttaa cgatgtagga aatagcgatt taaaagcgga agccgaaaaa acagcagctt
     8401 ctgtattgga agatttcaat tcacgaatta ttgatgttta ttttgcaagc attttaacaa
     8461 ctttacaaga agcgcaggat aatattggaa ccctagttaa agaagagaaa aagtatgacg
     8521 ctatctacaa caaagatgta aataatccgt tatccagcta cacaaaacag tttaaaacgg
     8581 tgcaagacta cacaggaact tctaaagaga gcttccaagg tttccaagat attatgaaag
     8641 aatttgagga aagcctaaat ctctctcaaa aagaaaacga agaacatatg aaaaacatgg
     8701 atgcttatac aaaaacacaa gaggaaaatg ctccttttgg ggcagaattc acagaaaact
     8761 tgtcaaaatt tgatggcact ttatcagcag aagatattcg aatgcaaacg gccgctttag
     8821 aacaagccaa tgcgaaaatg acttcagaat ttcaaatttt agaagatagt aattcattgt
     8881 tatcacaaac acaggcctta cagagctata tagctgaaac caatgcacgg attgatgcgg
     8941 tggatgccga gattatggga acgctcgaaa atgattttcg gacggctgtt tataatgact
     9001 tgttgcgtat tttacgagaa aacgagtact cggataagtt gaatgaaatt gggcttaaag
     9061 atttgaccgg agaagatatt aatgctggct ttaacaaaat gattgttaag gaaatacaat
     9121 cattaccaac atataatgcg gatcaattag cgtcgattgg gcttgatgaa gagatgtaca
     9181 aaaatgttgt aacgctctct aaggaatatt atagtaacca tcgcagtgct tttggcgaag
     9241 gttttagctt tacgactgat cccaaaactc taccaactga cacactgaaa agcgatacga
     9301 ttaatcgatt gaaatccgaa ggggtcacgc tagaaagcag ttcctatacg gtggaaggta
     9361 gcgattatcc aacagaaata attctaactt tagatgaaaa tttcactttt tcagatgttg
     9421 attgtttggt taatggaagc agtaatccag agttagttca acaaaccgca tacggagaaa
     9481 atggcataaa gcttagtata caggcgcttg gaagtacacc ggcagagatt aaaatcaccg
     9541 gaaaagcgaa gttgcgagaa ggtgtgaatg ttccattaat tggtgctgta aattggaatg
     9601 ctacactgca gcaatatgag aaaaaagaat atagtgaaat gccaacaatt ccatcagagc
     9661 ttgatcctac taccccggat acttcattaa tagttagaaa agaacctgta ccgattaagg
     9721 tcactgcacc aacatatttg aatgagacga agagttctgt aaaagcaatt actaatacag
     9781 taaaagatta ctataaacta caagcattat ttgatttata ttacggaatt gatgcgagtg
     9841 attctggaca aataccggat tttagtaatt atcaagtgac attagaaaat tctgcgaaag
     9901 catcctcgta ttattatatt tttaataaag aagatgtgat tggtagcttt gtaaatctta
     9961 ctacagatcg gtttgtggca gattatacga aaaaaatcaa agcttttgag aagcgaattg
    10021 atgactacaa aaatacaatg gctgaggcca attccagatc agaagacgta acaaatagat
    10081 taaacgaaac gacgcaagaa gctattaatt taaatacaaa tctagcgtta acgttgcaaa
    10141 acctagaatc ttggcgagag gcaagcaaag gtttaataga agaaaatggc gttgttttag
    10201 aaaaatctgg cgaagaagcc acgatggcac tgcaattaag ctccgagttt gccgggcttt
    10261 tagcggaaag tgaatcgtta gctggtactt ctgaaggtaa tttgaagtca gcggaagtcg
    10321 tgtacaaaac ttttgatgcg attgataagg aagccaaaaa tattcaacaa agcggagaaa
    10381 ctttagtaaa agaagcatct acactatccg atgatttaag cgaaaaattg gaagacgacg
    10441 aaacgttcca gaaaaatttc gctaaggtta tggaaaatag ccgtgttggt gatcgacaaa
    10501 atgaaaatct atatagtttc ttaagtagtc cggtcgataa gatgaatgct gggactattg
    10561 ttgcgggtga caaatcaatg ccatacttca tgattttgat ttgtacgatt ctggcaattt
    10621 tcactagcta cgttatttca caccaagaga aaaaacgtga acaattaaat gaatttgaga
    10681 aagaaatgtc gcttgtcttt aaaaatattc caattacttt cctagcgatt tgtgttggga
    10741 ttattgaggg gctcataata ggcgccattt caggatttat ttttgaagtt ggagaaattg
    10801 ggatgttcct atggataggt gtctgcgttc taattatgat gacgttagtt actgcttttt
    10861 catatttatt acgtcagttc aacatgattg ggatgtcgat tattttactc gttttaagtt
    10921 tgtatctatt cttaacggat gcagttggac ttaacattga taatgaatct attttcgcga
    10981 cgttcagaac gttctcgcca cttcaataca tggaatactt attgaatggg attttaagtg
    11041 cccagaaaga ttacattatt gtcgtataca gtttgattgg ggcggctcta ttatttactg
    11101 gtctcaacct atttgtctgg caccgttcta aagaagaagt agaggaggac gattcagatg
    11161 aaatttaaaa tagcagcact acttatgtta ctttgttttg cttttgctcc gggagttctc
    11221 gctgcggatt cagatagcta tttagaaaac aatgggaaaa tggacatcaa aacagataga
    11281 cttcaaaaaa cagaagaaga aaaaacaaaa gaactagaac agatggagga aacggagctc
    11341 gataagaacg gaattccact ttttactgac gaaatggacg aaaaaatcgc caaagaaaaa
    11401 gcggcagaga aagcggaata tgaccggatt aaagactcac tttttgaaga ggaatctaca
    11461 tctggtgaaa cagtgaaaaa aacgaaagag aagttgttta cagacgagta cgagacaaca
    11521 gctgtaaaca cggaaacacc tactactacg gaaacaacag tagaagatga aacgaaaaaa
    11581 acaaaacaaa aaacagttgg tggagcaatt gcaggaacac ttgtagcttt agcaggcggg
    11641 atttatgtgg ctgcgcgcaa tgtttttgaa tagaaagcgg ggagttttaa atggctaaaa
    11701 acacacatat gaatgtgaca gttgatttca ctaattgggg agcaagcaag tatgatttgc
    11761 gaattccggt gcatcaacca atcaaagcat taattatcaa tttggcagaa acgctcaaaa
    11821 tcgattacaa agatttgtcc aaatgtacga taaaaacaac gaataaagcg atattactaa
    11881 gcgatgatga caaattgact aattttcaaa ttgcggacgg agacatctta gaaattttat
    11941 agaaaaaaag gagaataaaa acgatgaata agacaattga aatggacgga acaacttacg
    12001 attttactta tgaggatcta gtttggagca ttacgtttcc aaaatcaaaa acacgcgcta
    12061 aagaactcgc acaactagaa ctattagaaa aacctgcgac acattttact cctgcaaaaa
    12121 tctcaagtga tagcgattcg tatacaattt cttatgagat tgcgaaacgt acttatggat
    12181 ttgaacaagt tcgaaaaatg ggacgtgaag ataaactgcg cgcactgcgg aatattgcgg
    12241 atttaggcga attgttaaac acgcgctata cattcttttt acacccggat aatctgattt
    12301 tcgatattaa cctagtgcca agtattgttc atcggggcat taaaaatata ttaccgcctt
    12361 atgaactaac agaagaaact tttttcaaac aatatcaatg tttcgttatt gcgatgtttt
    12421 ctaagaaatt ctcttttgaa aacttgtaca atggctcgct atcaggggct agaggaacgc
    12481 aatttgagaa gagtatatta gatgcaaaaa cggtgcaaga tattgctact attttagaag
    12541 aagcatacgt gaaagaacat gcggcggttc aaaaaaatat ggcaagcgta ccgaagaaaa
    12601 aatacagtac tttccgtggg ttggcggttg gtttcattat cgtcgctatt ttacttgcaa
    12661 ttccagtaag ttattttgcc ttcgttaaag tccctctgca aaatgattta ctaacggcaa
    12721 acgagaattt cctgaaaaca gattacgata aagtgattac aggtctagaa aatgtggatc
    12781 cagaaaaaat gccgcagtct gtccaatatg aattagctta ttcctatgtt aaaggcgaaa
    12841 aaatgagcga taaaaagaaa gaaaacatta tgaatacaat cagcttaaaa tctgacgcca
    12901 aaaacttact ttactggatt tacaatggtc gcggagaatt tagtaaatca cttgatattg
    12961 ccaaactttt agacgaccca acgcttgcga tgtacagttt aacaaaacaa attgaacagg
    13021 tacaaagtga tacaacatta agcggcgatg aaaaagtgga aaaactaaaa actttggaag
    13081 aaagcttgaa agaatacgat gaaaaagtaa atgaatcaac tacaactgaa gatgaaacaa
    13141 caaatacaga agcaaaataa gggagaatgg accatgaata gagaggcttt attaattgtt
    13201 agtaacgggc agcaatgtca taaaaaccac ttgtctcctg aaaaagtcgt gacaattggg
    13261 aatacaatcg aacacgaaat cacttatcct gaactggctg aggcgattga agttaaatac
    13321 gatgaaggct cttggaatgc tggaacaaca gcgctccaag cgaatcaagc tgtaaatgta
    13381 gagaacttag cattctatct atgccaagat ttacatacac aagtttatga tgttgtaacg
    13441 aatatttctg tgacatttgg cgttggaata gaaaatgatg tcacattaga tgatacaaaa
    13501 tcagatttta tacttttacg tgatgcaaag gaaaaactgt ttaagttaca agtcttaaat
    13561 ggcgaagttt atcataactt ttctctagta acggaagact gcgttctaga accgggtgat
    13621 cagctctata cggacggtgt gacgattaca atcggaaaag aagatattag tgtgctagct
    13681 gtgaaaaatc gcgtgacgag caaattagcg cctttatttg ctgcggacaa ttcgttcggg
    13741 gaagattatc cggattacca ccgttcaccg cggattattt accgtgcgcc agaagaaaaa
    13801 atcagcatgg cgaaaccgtc aagtaaaccc tcaaaaccaa cagatggctt aattaaaatt
    13861 attttaccac cccttatcat ggtggcaatt acggtcatga tttccatttt ccaaccacgt
    13921 ggactttata ttattatgac aatcgcaatg tcagcagtga caatcacaat ggcgattctt
    13981 aactacataa aatcacgtaa aaaatacaaa atcgattcca aacaacgcgt ggaaagctac
    14041 gatttgtatt taaaacgaaa aacgaaagaa ttgcacgaaa caagcgaaaa acagcgtcac
    14101 gctttaacct atcactatcc agacgtaact gaactagaaa aaatggcgtt acgtgtggat
    14161 tcgcggattt acgaaaaaac aatgttccat catgatttct tgactttccg agttggtcga
    14221 ggcgacgaag caagtagctt ttccgtggaa ttccaacagg aagagttcag ccaagaaaaa
    14281 gacgaacttg tagaagaagc tgtgaaaatt aaagggcaat atttatcaat caatgaagtg
    14341 ccagttgcga cagatttaat gcacggacca gtggggtata tcgggccacg ccgtttagta
    14401 ttagaacaac tgcaaatgtt agtaatgcaa acatcccttt tccatagtta ttatgatttg
    14461 caatttatta cgattttccc agaagaagag aaagcggatt gggactggat gcgctggcta
    14521 ccgcatgcga atatgcgtga tgtgaatgtg cgtggttttg tttaccatga acgttcgcgc
    14581 gaccaagtgt tgaactcgct ttatcaaatt ttaaaagagc gtaaacaagc gcttactgaa
    14641 caagcgagca aacaggaaaa attatacttt acgccacatt atgtggtttt aattaccgac
    14701 gaaaaattag tactcgatca cacggttatg gaattcttca atgaagatcc aagcgaacta
    14761 ggtgtttctt tagtgttcgt acaggacgta atggagagct tgccagaaca cgtgaaaacg
    14821 gtcgtggata ttcgtgatgc gaagagcggg aacattattt tggaacaagg cgaccttgta
    14881 aaccgagcgt tcgtgccgga tcatttgcca gcagattttg acaaagaagt aatcagccgg
    14941 gctcttgcgc cgctaaacca tcttcaaaac ttgaaaaact cgatcccaga atccgttact
    15001 tttcttgaaa tgtacggtgt agagcgcgtc gaagagttaa acattgctgg acgctgggcg
    15061 aaaaatgaaa cgtataagag tcttgctgta ccacttggct tgcgcggaaa agatgatatt
    15121 gttcaactga atttacatga aaaagcacac gggccgcatg gtttggtagc cggaacaact
    15181 ggttctggta aatcagaaat cattcagtct tacattatct cacttggcgt caatttccac
    15241 ccatatgaag tcgcgttctt gctgattgac tataagggcg gcggtatggc gaacttattt
    15301 aaaaatatgc cacatttact gggaacaatt acaaacttgg acggcgcgca atccatgcgt
    15361 gcactagctt ccatcaaagc cgaattgcag aaaaggcaac ggttatttgg cgagcacgat
    15421 gttaaccaca tcaaccaata ccaaaaacta tacaaacaag gaaaagcgac cgaaccaatg
    15481 ccgcatttat tccttatttc agatgagttc gccgagttga aatcagaaca accagaattc
    15541 atgaaagaac ttgtttcgac agcacgtatc gggcgttcac tcggaatcca tttaatccta
    15601 gcaacccaaa aaccaagtgg cgtcgtggat gaccaaatct ggtccaactc caaattcaaa
    15661 ctagccctca aagtacaaaa cgccagcgat tcaaacgaaa ttttgaaaac accagacgca
    15721 gcagaaatca cactaccagg ccgttcgtac ttgcaagttg gtaataacga aatttacgaa
    15781 ctgttccaaa gtgcttggag tggtgcggat tacgtgccag ataaggaaag cacggattat
    15841 attgatacga cgatttatgc gattaatgat ttaggtcagt atgatatttt gacagaggat
    15901 ttgagcggat tagataagaa ggatgatttg actaagttgc cgagtgaact tgatgcggtg
    15961 attgatcata ttcatgcgta tacggaggct tctgggattg aggcgttgcc gagaccttgg
    16021 ttgccgcctc tacctgaacg aattttcgcc caagacttac atccagtcaa ttttgaagaa
    16081 gcatggaaag aaccgaaaaa accacttcaa gcaacaattg gtttactgga tcaacccgaa
    16141 ttacaagcac aagtcccact aacactagat ttaacaaaag atggacacgt ggctgtattc
    16201 tcaagcccag ggtttgggaa atcaaccttc ttgcaaagtt tagtgatgga tttagcgcgt
    16261 caacataatc cagagcaact gcatgtttat ttgttggatt ttgggacgaa tgggttgcta
    16321 cctctagtag atctgccaca tattgctgat acaatgatgg tggatgaagt tgaaaaaata
    16381 cagaaatttt tacgaatctg cctaaatgaa ataaaaacaa ggaagaagct tcttagccaa
    16441 tatcgtgttg caaatataga gcagtatgaa agagcaagtg gaaaagaact acctaatatt
    16501 attgttgttc tagataatta cgacgctgta aaagatgcag gcttagggga tgattttgaa
    16561 aaaatcatta ctcaaattac tcgtgaaggt gcatccattg gaatgtttat gattattagc
    16621 gcatcaaggc atatgagttt gagaacacaa atggctacta atattaaaca aatgattgct
    16681 ttatatctaa ttgataaaaa tgatatatca tcaactgttg gtcgaacgga tacaccactt
    16741 gaagagtatc caggaagagc gcttgtaaaa ttagaaacag ttacaacatt tcaaacgacg
    16801 ttaccatcgc acggagaaga aacaattcaa cagattgaag gtattcgaaa tgaagcaaaa
    16861 ttaatgagag aaggttggca aggagaactt ccagagagcg taccaatgat tccagaaaaa
    16921 attaaactag ctgatttttg tgaatggatg gaaactaaag aggtcgttgc aaatggaaat
    16981 atacctatcg gagttgattt tgaatacgta aaaccagtag gcattgatta caagcaaacc
    17041 ggagtactaa ttattgcaga tgtaattgga cgaaacttag taagcataaa taaaaatgta
    17101 gctaattctc ttgtgcaaaa tccaaatatt tctctcttaa ttagcgacac agcgaatttt
    17161 gatttagtgg aaatgtctac taaagccaat ttatacagta acaacacaga ggatttgaag
    17221 cagaatatga aaaaagtact ctctatttat caatccagaa ctgaaaaagc agatgaactt
    17281 cgaaaagcag gagataattt aggcgtaact gccatgattc aaggattaaa agatatagtt
    17341 gctttcgtag gagattacga tatcttacta aaaactcttg atgaagaaga ccaaaaagtt
    17401 ctaatagata tgattaacaa tggaaaaaca tatggttgct atttaatttt aagtggttcg
    17461 attcaagcat ttaaaggata tggtgatttg aataaagctg ttcaagctca aagaaactat
    17521 atattctttg atcgactatc gaattcaagc ccattctcct tctcgtttaa tatttataga
    17581 gaacaagaat tattacctga ggaaggttat gtaatagcag gacaagagtg gcaaaaaata
    17641 aaaattgcaa aatatgaaga agaggtgtaa ggaaaatgct aacaaaagaa atattaccta
    17701 ttggaagcgt tgtttattta aaagaaagcc tgaagaaagt tatgattacg agtagattaa
    17761 ttacaattca gggagatgaa gaaaaagaat tttatgatta tggaggtgta gtttatccag
    17821 aagggacaaa ggatgacaat attttggcat ttgatgcaga agatataaca gatgtgaagt
    17881 ttagaggttt tgtagatgat gatgaggtag tcttggtgaa gagaatgaga gaatggcaga
    17941 aagaagaatt tggtgtttct ccagaagagg aggatgagat gcttgaatta tgatgaacgt
    18001 gtacgagttt taattgagtt gaaggttgat ttgtccggga aattagaaat gatggaaaat
    18061 gaagaagcgt tattatgtag acaaaaacat gattttgcaa gtgcctggtc aaatgcaaaa
    18121 acagaggatg cttacagaaa attaaatgaa gcagttagaa agaaaatcaa agaaacaacg
    18181 gaatatgcaa gagaaattga tgaaaaaatt actgctcgta tcaaacgaat tgaagcagca
    18241 tataaagcag aatatcagag taataggagc tatacatggc gtattgcaga aatcgatcca
    18301 attaaattta aagaaaagta taatgaaaga ttaaatcagt taagctactt atcatgtgat
    18361 ggcagtgtaa aaacacgttt aataaaagag tttcggcaaa ataatttcct gaaataggag
    18421 gatgaaatat ggtaagtcca atgccagata aaacagtaaa aatggataaa ggaagtatta
    18481 atcctaaatt agataaacta atttcaagtc tagacaattt tgataatatc aataagaaaa
    18541 tgggcactat agtaggtagc caggagatta gtggggaagc agcagatgct ttatctgaga
    18601 gcctattagt gctagtaagt tatggggaac aatatagttt agtaattaga aacctaaaag
    18661 aagtgatagt cgactattgt aaaagtgtgg aagaaattga taaaacagca gcaaacgcag
    18721 taagtaaagg cgtttaaaaa gaaagaggtt aaactatgaa aagtagaaat tggttaaaag
    18781 gattgggagt aacaatgatt gtcgttactt taattttaac gggatgcgga aatggagacg
    18841 ctgaaaagac agatacaaag gaacagacta aaagtgttga agaagaagga aaagaagtaa
    18901 agattgagag taatgaaggg aagccacagc atgaacaact tataacagtg aagttgccgc
    18961 cagaagcaga gtatttaaat gatgaaacgt tagaagtgta tgagcaagat aaaaagaagt
    19021 atgaccagac agagcaacta attactaata actcagttac aattctatta ggtgattttt
    19081 gctattatga gccggcatgg agcagtctta catgttctgc aattcttgtg aatggaactg
    19141 acacaaatat tgaagacctt agcttcaaag ctgaaataat gaataagcca atgtcaggaa
    19201 aaattttttc agatgacaaa gttccagaac ttacaaaagc aaaaacagga aaattccagc
    19261 caaacgaggg tataccaatt attttagttt tctcagaaga gaacccgaaa aatgaggaaa
    19321 atgcggagcc tcaaaaaatt aacattaaag atataaaggt taagataaag gatattcaat
    19381 ataaagcagt taaataggag ggagaaagat ggcaaaagaa attaaggtaa atccagattt
    19441 tttgaagaag gttgaaagca atgtaacaaa ttacattgat gcccagaaag aagtttctgt
    19501 tgaattacta gcagttagga ccaacttagc aagtaatttt tcaggtattg cttgcgacga
    19561 aataaaaaat tatataacag aattaatgaa tgatctagaa aaagaatttg gtgtatttat
    19621 tacaaggaat catgaaaaag ttaaggcgtt aagggaaagt tataaagaac ttgatggtca
    19681 gttgggacaa acctttaact atggaatgga gaggactaaa tgagcggaaa aataaaattc
    19741 aatatcgccg aagctcaaaa tattagtctt gagcttaaaa ttgcagcagg taggtatacg
    19801 caagaaacag aagagctatt aaaagtgctg aaaaataata gtttatgtga taaagaccaa
    19861 gatgtcgttg aacagagggg acgaatagag aagaataacc aaagacttat agaatataag
    19921 aaatttataa acacaaatct ctctaaatct aattcagtta tagaagaatt gtttatgagt
    19981 gtagaagtat tgtatgcaca gcaagtttct gagtttagaa atcctaactc tgcgggttat
    20041 aaagaattaa tgggaaatgt gaaagcgata tcatatcaaa aaatttcaca gatttcagga
    20101 ttgggagaaa tgcttacatc gaaaggttcg gtgggagcaa ttaaagatat cagagacaca
    20161 ctacttggaa cattggtaga tgatacttac ttga
//
LOCUS       DABQVC010000028        20007 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.028,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000028 DABQVC010000000
VERSION     DABQVC010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20007
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.028"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..329
                     /locus_tag="IBJ56_000732"
     CDS             <1..329
                     /locus_tag="IBJ56_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HAM3416996.1"
                     /translation="INAVINPLTAVLQVQNGKLLENKEWHELLKTIVKEIQTVLPVEN
                     ALEKVEVICQVTATNFSSMALDRMDNRMTEIDGIVLPILEKGESLPTLHALYHLIKGL
                     EGESDV"
     gene            322..708
                     /locus_tag="IBJ56_000733"
     CDS             322..708
                     /locus_tag="IBJ56_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3397 domain-containing protein"
                     /protein_id="HAM3416997.1"
                     /translation="MFDWLTNSTAIIIILPVVVFILTMFFSSFKLKKSQRRIMLAADL
                     STIFLIIAVHFFMIVLFNRSFLLYILLFLFILGIVIVVTAAKKEGEIQFRKILRGYWR
                     LCFFIFALLYVALYLYGIVYSLVLMF"
     gene            complement(638..2452)
                     /locus_tag="IBJ56_000734"
     CDS             complement(638..2452)
                     /locus_tag="IBJ56_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
                     /protein_id="HAM3416998.1"
                     /translation="MDKDYFTMRAHLYNITTDLEVSFKLNDVANIWFCTTKNAKRKLQ
                     QYQAKKMLTYLPGLGRGNVSRIIFPKQLELEVLDVLEQSLAEDAFSDILFLLQLPIPK
                     SWFTSISTEIQQIFGLQVTENQQEVLRSIVRRKLTTLDPLQTSVSMEAFLITQISDSL
                     VKYDEEKKKIIPHIAHHWKVSDDFTEWTFYLRKSVLFHHGRMLDSEDVKHTLMRSMQT
                     ESVSFWQLQDIQSIHCPNKFTISIQLKKTDPFFIRYLCTANMAILPRDIIFDEYTWIS
                     TGPFRVAERNDERLVLEAFDGYFLERPILDRVEFWTAQTGNNLKTIPMQFTSVDYEEN
                     PAYVERRKPGVGVNFICFNTHRNGAPQHPAFREAIYHLIDCQKASEQHFENYGTVASN
                     YYPEKSLPPKKHPEKIATLLKKANYQGEKVIFGTTQHPTAVKESKWIQEQAVEFGINL
                     ERKIITHQEASYSNVPAKETDFMMMGEIPASDDEMAYLDFLNNPYLLPQQLFNQAIIK
                     ELTEKLDAFKTEKDASKRDALQTSIDSWLTENHYLIYLHHPEKSQSLHSMIKGIAENP
                     YGYFDLSKVWIEISPLKTLKPDYRQSHRGKAPHTITQK"
     gene            2569..3816
                     /locus_tag="IBJ56_000735"
     CDS             2569..3816
                     /locus_tag="IBJ56_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3416999.1"
                     /translation="MFRELHPNIRARILIQFLSKVIGSMIFPFMAIYFSREINSSVAG
                     FLLMINVLAQFLAGMYGGHLADIIGRKKLMVTGELLKVFAFLGMVLCNSPMFHSPWIT
                     FVMLLIIGVAQGLINPAGEAMLIDVSTPENRSFMYSVSYWANNLSIMIGIMVGGWFFV
                     DYLFPLLVVLFIMSFVTAWLTISLISETLQQKEMPHKGSYGLMGMLKNYGQVLHDYRF
                     LLYTIGGIAIMSIEFQRSNYISVRLAEDVKALLVHLGPLGNISLNGVQIVSVLTAVNT
                     LFIVLFTVPIARFVTKRAQQPIMYVGFTLFALGFAVCAFANNLTVLLLATMVLSIGEL
                     LYVPTRQTILAAIVDDERRGAYMAFNGIIFQIGKMIGSVSLVFAPFIGKYGMGAFTIT
                     LGVLSIVFSAVALKSGWEKVLVK"
     gene            4017..4448
                     /gene="mraZ"
                     /locus_tag="IBJ56_000736"
     CDS             4017..4448
                     /gene="mraZ"
                     /locus_tag="IBJ56_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HAM3417000.1"
                     /translation="MFMGEYQHNIDIKGRLIVPAKFRELLGDNFVITRGLDKCLFAYP
                     QEEWKKLEEKLQTLPLTKKDARSFTRFFFSGASECELDKQGRINIPSNLLQYADLEKE
                     TVIIGVSSRIEIWSKSEWDDVFNEAEESFADLAENMIGFDI"
     gene            4461..5399
                     /gene="rsmH"
                     /locus_tag="IBJ56_000737"
     CDS             4461..5399
                     /gene="rsmH"
                     /locus_tag="IBJ56_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HAM3417001.1"
                     /translation="MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNE
                     KGHLFAFDQDQTAIDNAKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLG
                     VSSPQLDERERGFSYHQDAALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFS
                     KQIAREIERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELG
                     AVEDSLEKALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKP
                     DFKLATRKPIVPSEEELEQNNRARSAKLRVIEKIIK"
     gene            5416..5778
                     /gene="ftsL"
                     /locus_tag="IBJ56_000738"
     CDS             5416..5778
                     /gene="ftsL"
                     /locus_tag="IBJ56_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HAM3417002.1"
                     /translation="MSNVAYKSNLEPNRVHREAEQPKKQILKRGQMTLGEKVIITIAL
                     AIVLVVAFRIISVQAQIYTVNQEIQTKETKILEQQKSNEDLKVEVKDLGRYERILKIA
                     KEKGLKLDGDNVKVVDGQ"
     gene            5775..8030
                     /locus_tag="IBJ56_000739"
     CDS             5775..8030
                     /locus_tag="IBJ56_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HAM3417003.1"
                     /translation="MKRRIGNMRRGALVLFIFFTILFLLVSGRFLYLQITGEANGVPL
                     AAKASKQHLKSSVLEAKRGSILDRKGEVLAEDTASYTVAAVVSDKLSKTTKNPMRVVD
                     EEKTARILAKYIPMDESDILDKLNEKGKYQVEFGAVGKNISTETKAKIDKENLPGIEF
                     TRQSERFYPNGTFATQLIGFAQQEEEKNTTVLEGKMGIESRYNDILTGKNGKIDYSTD
                     RMGYILPNSKNKVTEAKDGKDITLTLDKKIQTFLEDTMTTVDAKYKPKNMMAVVADPK
                     TGEILAISQRPSFNPADRSTITGNSSSIWQDLPVEYAYEPGSVMKIISLASAIDTNAY
                     NANEYYQSGSYKVGDIAIHDHNNGNGWGSITYREGVERSSNVAFAKLLNKMGTDTFKT
                     YLDKFGFGKKTGIALPNETSGKILYNYPIEKVTTVFGQGTTVSMMQMIQAASAIASDG
                     TMKEPYVVSSVKDPNTGEETDTKTKIAGKPISAETAKKTRDELKNVISGEHGTGKLYA
                     IPGYDVAGKTGTSQIPDPKTGKYMTGADNYIFSFLGMAPADNPELVIYVTMQQPQLSG
                     SQTGGEAVSEVFNPVMKNSLQYMNIKPGDAEKLASEKVPVLAGKTIDEAKKIVKDKGL
                     EPIIVGNGKKIVQQLPQANAEIMQGQKVILMTDGDMTAPDMVTWSKDDALKVSEITGI
                     PFEFSGNGYVKSQSVSAGSVINSETKMKITLAPPEEISAFNQNHDQDTAEKNKKATDI
                     QENAGIGDLLN"
     gene            8205..9680
                     /locus_tag="IBJ56_000740"
     CDS             8205..9680
                     /locus_tag="IBJ56_000740"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HAM3417004.1"
                     /translation="MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDG
                     ELVDGHQFASRAVELGAVAIIAEKQLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALK
                     LVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQET
                     FRDMLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKS
                     LLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITS
                     HGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG
                     RFELVHAGQEFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMA
                     KIAVDYATNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEA
                     GDVILIAGKGHEDYQVIGDEVIDFDDRVEARIAIEKKLGLA"
     gene            9727..10701
                     /locus_tag="IBJ56_000741"
     CDS             9727..10701
                     /locus_tag="IBJ56_000741"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HAM3417005.1"
                     /translation="MSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKM
                     HEKKSGTPTMGAVVFITAMLISFLIFSFISGEVSAATWLLFIALALFGALGFLDDYIK
                     VVQKRNLGLTSKQKFLGQVAISILFYLVYHLNGFAETLNIPFTNIEVDLGWFFVIFIL
                     FWLVGFSNAVNLTDGLDGLVSGLSVIAFSAFGVIAFYQEQMDVAIFCFAIVGGMLGFL
                     LFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLIGIIFVIETASVILQVFYFK
                     ATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLIGAIISVCVVIF"
     gene            10843..12210
                     /locus_tag="IBJ56_000742"
     CDS             10843..12210
                     /locus_tag="IBJ56_000742"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HAM3417006.1"
                     /translation="MKKIEMYHHKKVLVLGLARSGVSAATIMHKLGAFVTVNDQKPFS
                     ENPEAQGLLEQGIKVICGSHPIELLDEGFELVIKNPGIPYNNPMIEKALKLKIPVITE
                     VELAYQISEAPIVGITGTNGKTTTTTIIHHMLNAHKENSSLLAGNIGFPASAVAENAT
                     SDQYISMELSSFQLMGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTAD
                     DFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGARDNILL
                     PGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSKAT
                     NILATQSALKGFKNPVVLLAGGLDRGNSFDELLPFFKNVKALIVFGETADKIGRVGKI
                     AGIDVHYVDNVEAAVPVAYRESAPGDIILLSPACASWDQYRTFEVRGNAYMDAIGELI
                     EEVEK"
     gene            12207..13298
                     /gene="murG"
                     /locus_tag="IBJ56_000743"
     CDS             12207..13298
                     /gene="murG"
                     /locus_tag="IBJ56_000743"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HAM3417007.1"
                     /translation="MKVAISGGGTGGHVYPALALIRELKKIHPEAEFLYIGTEKGLEA
                     GIVKREGIPFEAIEITGFKRSLSLENIKTVMRFLSGAKKSKQILRDFKPDVVIGTGGY
                     VCGPVVYAAAKLKIPTLIHEQNSVAGLTNKFLSRYTDKVAICFEEVSDSFASEKIVFT
                     GNPRASEVVGVDSEGALETYGLVSGKPTVLVFGGSRGARGVNEAVEAILPEWNNRDFQ
                     LLYVTGDVHYEKIKDSLAELNLGNHISVQPFIYDMPKILNAVTLVVSRAGATTLAELT
                     ALGVPSILIPSPYVTANHQENNARALEKNNAAIVITEAELKNTDLMATVDSILNDEAK
                     LNGMKLSAKQMGRPDAAAKLVEAVLSIMK"
     gene            13321..14133
                     /locus_tag="IBJ56_000744"
     CDS             13321..14133
                     /locus_tag="IBJ56_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HAM3417008.1"
                     /translation="MAENKRVISIENRIPELKKYRKKKLVRHLAILIGIFVILIAITL
                     YFLSPLSKLDKIAVSGNKQLTENEVRKESGLEIGEFVIGISNGKTEDTLKKNTLIKDA
                     TVSKEGINDVQINITEFKTIGYQQQDGKYYDVLESGIMLTDQPRQFPIGNDLLFQNFK
                     NGKTLEKMVAQINKLPKDVVSSISEVIYSPTKTDKNHIKLYMNDGNQVSADISTFAEK
                     MQHYPAIVAQLAKGQKGVIDIEVGSYFQSYYQQNAEKKAAEEAAKEKKETNE"
     gene            14498..15778
                     /gene="ftsA"
                     /locus_tag="IBJ56_000745"
     CDS             14498..15778
                     /gene="ftsA"
                     /locus_tag="IBJ56_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HAM3417009.1"
                     /translation="MGDSEIYVSLDIGTASVKVIIAEMADDRLNIIGVGNVESSGIKK
                     GIIIDIDKTVESIKKAIEQAERMVGVEISQVIVGVVSSQVHLEACRGIVAVGSENREI
                     TDEDVWNVMDAAQVVPLSPEREIINTIPDQFVVDGLTGITDPRGMIGVRLEMEGTLIT
                     GSKTILHNTLRCVERAGLEISDIALQPLAEASISLSEDDKEFGTALVNVGAGTTTVSV
                     FEQGRLTYTGVIPVGGDNITKDLSLGLNTSTANADRVKLDHGYAFYDDASPDEVFAID
                     VIGSDQKQHFTQVEAADIIEARMEEIFQLVVEELTRVGKTHLPGGYVLTGGSMAIPGA
                     IDLAGKTLAAHVRLAIPDYIGVREPSFTTAVGLIKYAYQMAELEGRDVSSSASEPRYD
                     DEAPKQKQPKPKQKKSDDEKVSTKMKNFFGAFFE"
     gene            15845..17020
                     /gene="ftsZ"
                     /locus_tag="IBJ56_000746"
     CDS             15845..17020
                     /gene="ftsZ"
                     /locus_tag="IBJ56_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HAM3417010.1"
                     /translation="MLEFDTSSESLATIKVIGVGGGGNNAVNRMIEHGVQGVEFISVN
                     TDAQALNLAKAETKLQIGTKLTRGLGAGAVPEIGKKAAEESREQIEEALKGSDMVFVT
                     AGMGGGTGTGAAPVIAQIAKEMGALTVGVVTRPFGFEGPKRTKQALTGTEAMKEAVDT
                     LIVIPNDRLLQIVDKNTPMLEAFREADNVLRQGVQGISDLIAVPGLINLDFADVKTIM
                     TNRGSALMGIGIATGENRAAEAAKKAISSPLLETSVDGAKGVLMNITGGSNLSLYEVQ
                     EAAEIVSSASDEDVNMIFGSVINDELKDELIVTVIATGFDEEKQAQQQAQANRRPNQS
                     IQVNRPNYAVQDEQQNDYAQNAPQQANAPVHEQQAEPQQNSSDVDVPAFIRNRNRRG"
     gene            17139..17828
                     /locus_tag="IBJ56_000747"
     CDS             17139..17828
                     /locus_tag="IBJ56_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HAM3417011.1"
                     /translation="MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITE
                     LYDLGIRHFGENRADVFQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDR
                     SSLAKEIEKRATKPVKCFLQVNISGEESKHGFSKEEALSFLQEANFTFIEIVGLMTMA
                     PITNSDIELHHVFHELKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVG
                     RALVSDDNMEV"
     gene            17832..18290
                     /locus_tag="IBJ56_000748"
     CDS             17832..18290
                     /locus_tag="IBJ56_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HAM3417012.1"
                     /translation="MGLSNKFKSFFFLDEEEEYYEEEVAREPEPMQKKTKKEKPNKNR
                     FYAVEEDDAKVVSMQGAQFSSRMVLAEPRVYAEAQELADYLKEYKSVVVNLQRISHDQ
                     ATRIVDFLSGTVYALGGDIQRVGNNIFLCTPDNVEVDGSISEMLDEQNFM"
     gene            18313..18603
                     /locus_tag="IBJ56_000749"
     CDS             18313..18603
                     /locus_tag="IBJ56_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HAM3417013.1"
                     /translation="MQSILYQVVEIILFIIRWLPTLMFIYFLMSWFPGARESKIGQFL
                     ARIFEPILEPFRRIIPPIGMFDISSLVAYFIFQYAMRVLTGLIQVYVIPMLF"
     gene            18728..19504
                     /locus_tag="IBJ56_000750"
     CDS             18728..19504
                     /locus_tag="IBJ56_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HAM3417014.1"
                     /translation="MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRF
                     ITETVIGGYDEINVQFFGGVAHAERRRALIYPDYYTPTEADFEIALFHIRYPVKFTTL
                     THQKILGTLMSLGMKRDIFGDILNNGTEWQLLVESTMKDYLTLQLEKIGKVNVMLEET
                     DLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNWKTVENP
                     DFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEIGYLK"
BASE COUNT         6578 a         3301 c         4259 g         5869 t
ORIGIN      
        1 ttattaatgc agtaattaat ccgctcacag ctgttcttca agtccaaaat ggaaagctcc
       61 ttgaaaataa agaatggcac gagttattaa agacgattgt aaaagaaata caaacggttt
      121 tgccagtaga aaatgcttta gaaaaagtgg aagtaatctg ccaagtgaca gctactaatt
      181 tttcttcgat ggctcttgac cgaatggata atcgaatgac agaaattgat ggaatcgtgc
      241 tgccaatttt agaaaaaggg gagtcacttc ctacgcttca tgcgttatat catctaatta
      301 aagggttgga aggagaaagc gatgtttgat tggttaacta attcaacagc aataattatt
      361 attttaccag ttgtggtgtt tattttgacg atgttttttt ccagtttcaa actaaagaaa
      421 agtcagcgga gaattatgtt ggccgctgac ttatccacta ttttcttgat tatagctgtt
      481 cattttttca tgattgtgct atttaatcgc tcgttcttat tatatatttt attgttttta
      541 tttattttag gtattgtaat tgttgtcacg gctgcaaaga aagaaggcga gattcagttc
      601 cgcaaaatcc tacgtggtta ctggcgccta tgcttcttca tttttgcgtt attgtatgtg
      661 gcgctttacc tctatgggat tgtctatagt ctggttttaa tgttttaagt gggcttattt
      721 caatccacac tttgcttaaa tcaaaataac cataaggatt ttctgcaatt ccttttatca
      781 ttgaatgaag cgattgactt ttttccggat gatgcaagta aattaaataa tgattttctg
      841 ttaaccagct atcaatgctc gtttgtaagg cgtctctttt ggaggcgtct ttttctgttt
      901 taaatgcatc gagcttttcc gtaagttctt tgataattgc ttgattgaaa agttgttgtg
      961 gcaacagata ggggttattt aaaaaatcta aataagccat ttcgtcatct gaggctggga
     1021 tttctcccat catcatgaag tcggtttctt ttgctggaac gttggaatag gaagcttcct
     1081 gatgcgtaat gatttttctt tctaagttaa ttccgaattc gacagcttgc tcttgaatcc
     1141 attttgactc ttttacagcg gtaggatgtt gggtagttcc aaaaataact ttttcgcctt
     1201 ggtagtttgc tttttttaat aaagtagcga ttttctcagg atgtttttta ggtggaaggg
     1261 atttttcagg ataatagtta gatgcgactg tcccatagtt ttcgaaatgt tgttcacttg
     1321 ctttttgaca atcaatgaga tggtagattg cctctcgaaa tgccggatgt tgtggggcgc
     1381 catttcggtg cgtattgaaa caaataaaat taacgccaac accaggttta cgacgttcta
     1441 cataggcggg attttcctcg taatcaacgg aagtgaattg cattggaatg gtttttaaat
     1501 tgtttccagt ttgggcggtc caaaattcta ctcgatcaag aatcggtctc tcgagaaaat
     1561 atccatcaaa ggcttctaag accaagcgct cgtcattccg ctctgcaact cgaaagggac
     1621 cagtagaaat ccatgtatat tcatcaaaaa taatatctcg cggtaaaata gccatattcg
     1681 ctgtgcataa ataacgaatg aaaaaagggt ccgttttttt tagctgaatg gagatcgtga
     1741 atttattagg gcagtggatg gattgaatat cctgtaattg ccagaaagaa accgattctg
     1801 tttgcataga acgcatcaag gtgtgcttta catcctcgct atccagcatg cgtccgtgat
     1861 gaaataaaac actttttcgt aaataaaatg tccattccgt aaaatcatca gatactttcc
     1921 agtggtgtgc tatatgaggt ataattttct ttttctcttc atcatatttg acgagagagt
     1981 cactaatttg ggtgatgaga aatgcttcca tagatacaga agtttgaagt gggtctaagg
     2041 tagtgagctt gcgacgaacg atggagcgca gaacttcttg ttgattttct gttacttgca
     2101 aaccgaatat ttgttgaatt tccgtagaga tacttgtaaa ccagctttta gggataggca
     2161 attgtagcaa aaataaaata tcgctaaatg catcttcagc caaactttgt tccaaaacgt
     2221 caagaacctc tagttctaac tgtttaggaa aaataatcct tgaaacattt cctcggccta
     2281 gcccaggaag ataagtaagc atttttttcg cctgatattg ttgcagttta cgcttggcat
     2341 ttttagtcgt acaaaaccaa atatttgcca catcatttaa tttgaaagac acttctaaat
     2401 cggtagttat attgtataaa tgcgcgcgca tagtgaaata atctttatcc ataacaacag
     2461 ctccgtccta aaaggggaca atatatgaaa atgaataccc tttttaaatt tatgtatccc
     2521 ttttatacta gcagagaagt cagaaaaatt gcaaatggag gggatgtcat gtttagagag
     2581 ttgcacccaa atattcgtgc gcggatatta attcagtttt tgagtaaagt aattggttcg
     2641 atgatttttc cttttatggc aatttatttt tcaagggaaa ttaatagtag tgtcgccggc
     2701 tttctcttga tgattaatgt attagcacaa tttcttgctg gcatgtacgg tggacatcta
     2761 gcggatatta ttggacgtaa aaaattaatg gtcaccggag aactgcttaa agtgtttgcc
     2821 tttctcggga tggtactatg caattccccc atgtttcatt ctccgtggat aacttttgtc
     2881 atgttactta ttattggggt agctcaggga ttgattaatc cagctggaga agcaatgtta
     2941 attgatgtaa gtaccccaga gaaccgttca tttatgtatt cggtcagtta ttgggcgaat
     3001 aatttatcga tcatgattgg aattatggtg gggggttggt tttttgtaga ttatctgttt
     3061 cctctattag ttgttctttt tatcatgtca tttgttacgg catggcttac tataagctta
     3121 atttccgaga cgttgcagca aaaagaaatg ccgcacaaag ggtcatatgg actaatggga
     3181 atgcttaaaa attatggaca agtattacat gattatcgtt ttcttctata tactattggt
     3241 ggaattgcta tcatgtcgat cgagtttcaa cggagcaact atatttcggt tcgtttagca
     3301 gaagatgtga aagcgctact tgtacatttg gggccacttg gaaatatttc tctcaatgga
     3361 gtacaaatag tgagtgtgtt aaccgctgtg aatactttat ttattgtact ttttaccgta
     3421 ccaattgcga gatttgtgac taaaagggcg cagcaaccta ttatgtatgt agggtttact
     3481 ttgtttgcgc ttggatttgc agtttgtgct ttcgcaaata atctaacagt tttacttttg
     3541 gcgacgatgg tgctctcaat tggtgaatta ctctatgtac caacacgtca aacgatctta
     3601 gcggcaattg tagatgatga aagacgtggg gcctacatgg catttaatgg tattattttc
     3661 caaattggta aaatgattgg ttctgtaagt ttagtatttg caccatttat tggtaaatat
     3721 ggcatgggag cttttacgat tacgctgggt gttttaagta tagtgttctc agcagtggca
     3781 ctaaaatctg gttgggaaaa agtgttggta aaataaatgt tggttcaaag tggggaatcc
     3841 ctccaccaag ccccacattg ttttttaaga attgaattag atgaaatggc tttaaataag
     3901 ggattgatca ttctatgctt tggctgggat gatttttttt acactttttt aggtttttgg
     3961 tggtgcgaag tggggagatg tggtaaagtg gtatgtatga aagtgggtga agtctaatgt
     4021 tcatgggaga atatcaacac aacatcgata taaagggcag attaattgtg ccagctaaat
     4081 tccgtgagct tttgggggat aattttgtta taacccgagg acttgataag tgtttatttg
     4141 cttatccaca agaggaatgg aaaaagcttg aagaaaagct ccaaacctta ccacttacta
     4201 agaaagatgc tcgttccttt acacgtttct tcttttccgg tgcgtctgaa tgtgaactag
     4261 acaaacaagg ccggattaat attccatcca acttactaca gtatgcggat ttggaaaaag
     4321 aaacagttat tatcggggtt tctagtcgta ttgaaatttg gagtaaatca gagtgggatg
     4381 atgtctttaa cgaggcagaa gaatcttttg ctgatttagc cgaaaatatg attggctttg
     4441 atatttaagg gggtaaacgc atgtttaaac acgaaaccgt attactacat gaaacagtcg
     4501 atatgcttga agtaaaacca gacggaatct atgtcgatgc aacacttggc ggcgcaggtc
     4561 actccgagta tttactaaat aagcttaatg aaaaagggca tttatttgca tttgaccaag
     4621 atcaaacagc aattgataat gcaaaaatta aactagcaga ttatagcgat aaagtgactt
     4681 ttattaaagc caattttcgc gatatgaaag aagcattaaa tgagcgtggt atcgaagcgg
     4741 ttgatgggat tttgtatgat ttaggcgttt catccccaca actagacgag agagaacgtg
     4801 gttttagtta tcaccaagac gctgcactgg atatgcgaat ggatcaagaa caagaattga
     4861 cagcaaaaat agttgttaac gaatggtctt atcaagattt aatccgtatc tttttccaat
     4921 atggcgaaga aaaattttcg aaacaaattg ctcgtgaaat cgaacgtcgt cgtgaagtaa
     4981 agccaattga aacaacaggc gaactagtag atattatcaa aacagctatc ccggctccag
     5041 caagaagaaa aggcggacat ccagggaaac gcacttttca agccatccga attgccgtta
     5101 acgacgaact cggtgcagta gaagattcgc ttgaaaaagc cttaacttta ttaaaaccag
     5161 gcggcagaat tagcgtaatt acgtttcatt ctttagaaga ccgcattaca aaacacttat
     5221 tccaagaagc gacaaaagga ccagatttac caccaggtct tcctgtcatt ccagatgaat
     5281 ataaaccaga tttcaaactt gcgacaagaa aaccaatcgt accaagtgaa gaagaactgg
     5341 aacaaaataa ccgagcgcgt tcagcaaaat tacgcgtgat tgaaaaaatt atcaaatagc
     5401 aggagttgaa aaaatgtgag caatgtcgcc tataaatcga atctcgagcc aaatagagta
     5461 catagagaag cggaacaacc taaaaaacaa atcctaaaac gtggtcaaat gacacttgga
     5521 gaaaaagtaa tcatcacgat tgcgcttgcg attgttttag ttgttgcttt tcgtataatt
     5581 agcgtacaag cgcaaattta cacagtgaac caagaaattc aaacaaaaga aaccaaaatt
     5641 ctcgaacaac aaaaatcaaa tgaagactta aaagtagaag taaaagattt agggagatat
     5701 gaacgtattt tgaaaatcgc taaagaaaaa gggctaaaac ttgatggcga taatgtgaaa
     5761 gtggtagatg gtcaatgaaa cggcgtatag gtaacatgag aaggggagct cttgtgcttt
     5821 ttatcttttt cacaattctc tttctcttgg tttctggccg ttttctttat ttgcaaatta
     5881 cgggagaagc aaatggggta cctcttgcag caaaagcatc taaacaacat ttgaaaagca
     5941 gtgttctcga agcaaagcgt ggctccattt tagatcgtaa aggagaagtg ctagcggagg
     6001 atacggcttc ttacacggtt gcagcagtag ttagcgataa actttccaaa acaacgaaaa
     6061 atccaatgcg tgttgttgac gaagaaaaaa cggctcgaat tcttgccaag tatattccta
     6121 tggatgaatc tgatattcta gataaactca atgaaaaagg aaaataccaa gtcgaattcg
     6181 gcgctgtcgg taaaaatatt tctacagaaa caaaagcaaa aattgacaaa gaaaatttac
     6241 caggtattga atttactcgt caatcagaac gtttctatcc taatggaacg tttgcaacac
     6301 aattaattgg ttttgcccaa caagaagaag aaaagaatac tacagtttta gaaggtaaaa
     6361 tgggtattga atcccgttac aatgatattt tgacaggcaa gaatggcaaa attgattaca
     6421 gtacagacag aatgggctat attttgccta actctaaaaa caaagtaacg gaagcaaaag
     6481 acggcaaaga tattacgcta acgctagata aaaaaattca aaccttttta gaagatacga
     6541 tgacaactgt ggatgcaaag tacaaaccta aaaacatgat ggcagttgta gctgatccga
     6601 aaacaggtga aattttggct attagtcaac gtccttcttt caaccctgct gatcgatcta
     6661 ctattactgg aaacagctcc agtatttggc aagatttacc tgttgagtat gcttatgagc
     6721 caggttcggt aatgaaaatt atttctcttg catctgctat tgatacgaac gcatataatg
     6781 ccaatgaata ttatcaatcg ggttcataca aagtaggaga tatcgcaatt catgaccata
     6841 ataacggtaa tggttggggg tctattacgt accgtgaagg ggtagaacgc tctagtaacg
     6901 ttgcatttgc caaactttta aacaaaatgg ggaccgatac gtttaaaaca tatttagaca
     6961 aatttggttt tggtaagaaa acaggtattg ctttacctaa tgaaacaagc gggaaaattt
     7021 tatataacta tccaattgag aaagtaacaa ccgttttcgg ccaaggaaca accgtttcaa
     7081 tgatgcaaat gattcaagct gcttcggcta tcgcaagtga tggcacgatg aaagaaccat
     7141 atgttgtttc aagtgtcaaa gatccaaaca caggcgaaga aaccgatact aaaacaaaaa
     7201 ttgctggaaa accaattagt gcagaaacag cgaagaaaac gcgtgacgaa ttaaaaaacg
     7261 ttattagcgg cgaacatggt actggtaaat tatatgcgat tccgggatac gatgtagctg
     7321 gtaaaaccgg tacatcacaa attccagatc cgaaaactgg taagtatatg actggagcag
     7381 ataattatat attctctttc ttaggaatgg caccagcgga taatccggag ttagtaatct
     7441 atgtgacaat gcaacaacca caattgtccg gcagtcagac tggcggagaa gcagtctcag
     7501 aagtttttaa tcctgtaatg aaaaacagtc tacaatatat gaacatcaaa ccaggcgatg
     7561 cagaaaaact agcttccgaa aaagtaccag tcttagcagg aaaaacaata gatgaagcta
     7621 aaaaaatagt gaaagataaa ggattagaac caattatagt cggcaacggc aaaaaaattg
     7681 tccaacaact tccgcaagcg aacgccgaaa tcatgcaagg tcaaaaagtt attttaatga
     7741 cagatggtga catgactgcc cctgacatgg taacttggtc gaaagacgat gcgctaaaag
     7801 tttctgaaat aactggtatt ccgtttgagt ttagtggaaa tggttacgtg aagagccaaa
     7861 gtgtatctgc gggtagcgta attaatagtg aaacaaaaat gaaaataact ctcgccccac
     7921 cagaagaaat aagtgcattt aatcaaaatc acgatcaaga tacagcagaa aaaaataaaa
     7981 aagcaactga catccaagag aatgccggta tcggtgattt gctcaattaa taataggaag
     8041 atagaagtat gtcagcttta caaagtggca tacttctaac tttaaatgca atctgtgtct
     8101 tttgtcgtgg tagatatagt ttgttgtttt tgctaagata gaaaaggatt ctttttggtt
     8161 ttagcaaaaa taacagaaag aataagtttg aggagatggc aagaatgaag ttaaatgaac
     8221 taatgcaagc tatcccggtt tttactggcg aggcaagtga aacaattgaa attagccata
     8281 tcgcccaaga tagtagaaaa gtaaaaccag ggacgttgtt tatttgtata gatggagaat
     8341 tggtggatgg acatcaattt gcatcacgtg cagtagaact aggagcggta gcaattatcg
     8401 cggaaaaaca attagatgta tcgattcctg tcatttatgt aagagattca aaacgtgcta
     8461 tggcgatgtt agccgattac ttttatggat ctccaaccca agcattaaag ctcgttggga
     8521 ttactgggac aaatgggaag acgaccgtga gccacttagt ggaacaaatc gtgcgcgaaa
     8581 atggcgagca aacaggtttg attggcacga tgtatcgcaa aattggcgac caaattttag
     8641 aaacaaaaaa tacaacgcca gatagcctca ctttacaaga aacattccgg gacatgttac
     8701 ttagtggagt gagcacagct gtgatggaag tatcctcgca tgcactcgtt caaggtcgcg
     8761 tatatggttc agattacgat gttgctgtat ttatgaattt gtctcaagat catttggatt
     8821 atcatcatac aatggaagaa tacgccaatg caaaaagctt attgtttgcg caactaggca
     8881 acagctacca tacaagtaac ccaaaaattg ctgtgttaaa cgcggatgac gaggaaagcg
     8941 tgcgtatgca aaaagcaaca gctgctcatg taatcacttt tgggataaaa caacaagctg
     9001 acttcaaagc aagtaatatc agaattacta gccatggttc tacatttgat ttacggacac
     9061 caattggtaa ttttacattg aaaataaaaa tgattggaaa ctttagtgtt tataacgtat
     9121 tggctgcgat tgcaactagc tttgcgctac atatccctat ggaaaaagca attaaaacag
     9181 tggaaagcat accgggtgtc aaaggccgtt ttgaacttgt gcatgcaggg caagagttcc
     9241 ctgttatagt tgattacgcc catactccag acggcttgct aaatgtatta gaaacaattg
     9301 ctgagtttgc agaaaaacgc gtttttgtcg ttgttggttg tggcggggac cgtgataaag
     9361 gaaaacgtcc acaaatggca aaaatcgctg tagattatgc aacaaatcct atttttacat
     9421 cagataatcc gcggagtgaa aatccgcgtg cgattattga agatatgatt caaggtgttc
     9481 catatagtga ttcttatgtg gttcacgaaa accgccgaga tgcgattcgt tttgcagtaa
     9541 atgaagcaga agcaggggat gttattctga ttgctggaaa aggtcatgaa gattatcaag
     9601 tgattggtga cgaggttatt gattttgatg accgagtaga agcccgaata gctattgaaa
     9661 aaaaacttgg actcgcataa aatatgaagt gaagtgcttt gacaaacaga ttggggagaa
     9721 tttattgtgt ctttatacat gttagtatca acatttgcag ttgcttttat cattacggtg
     9781 ataggtgtac cactatttat accattcttg gtgaaattaa aattcggcca aagtattaga
     9841 gatgaaggtc cgaaaatgca tgaaaagaaa tcagggacac cgacaatggg ggcagttgtt
     9901 ttcattactg caatgcttat tagtttcttg atcttttcgt tcatcagtgg tgaagttagt
     9961 gcagctacgt ggctgctatt catcgcgctg gcactatttg gcgcattagg tttcctagat
    10021 gactatatca aagtagttca aaaacgtaat ctaggcctta cttcaaagca gaagttttta
    10081 ggtcaagtgg caatttcgat tttattctat ctggtatatc atttaaatgg ttttgctgag
    10141 acgcttaata ttccgtttac aaatatagaa gtggatcttg gttggttctt tgttatcttt
    10201 attttgttct ggttagttgg tttctctaat gcagttaatt taacagatgg tttagatggt
    10261 cttgtctctg gcctttctgt cattgctttt tctgcttttg gtgtcattgc attttaccaa
    10321 gaacaaatgg atgtcgcgat tttctgtttt gcgattgtgg gcggtatgct tggatttcta
    10381 ctatttaata aaaatccagc gaaaatcttc atgggagata ctggttcgct tgcactcggt
    10441 ggaagtatcg ccgcaatttc tattttagta catcaagaat ggctgttact cttaatcgga
    10501 attattttcg ttattgaaac agcatctgtt atattgcaag tattttattt taaggcaact
    10561 ggaggaaaac gaatcttccg tatgacacca attcatcatc actttgaact tggtggctgg
    10621 tccgaatggc gtgttgtttt aacgttctgg ggaatcgggt taatcggagc aattatttct
    10681 gtctgtgtag tcatttttta aataatgcgc cgtaatcttt ttacggcaaa agcgtctcta
    10741 gttagctgtt tttttacaga atctggttgg cgctttccgt cgtttttgtg aaaatcataa
    10801 attcgaccgc caattttgat ataaatgggg gaaccaaagg aaatgaaaaa aattgaaatg
    10861 taccatcaca aaaaagtact tgtcttgggt cttgcaagaa gtggtgttag cgcggcaaca
    10921 attatgcaca aactgggagc atttgtaact gttaatgatc aaaaaccttt tagcgagaat
    10981 ccagaagcac aaggtttact tgagcaaggt attaaagtta tttgcggttc gcacccaatt
    11041 gaacttttag atgaaggatt tgaacttgtc ataaaaaatc ctggaattcc gtacaacaac
    11101 ccaatgattg aaaaagcgtt aaaactcaaa attccagtca ttacggaagt cgaattagct
    11161 taccaaatat ctgaagcacc aattgttggt attacaggaa caaatggtaa aacgacaaca
    11221 accacaatca tccaccatat gttaaatgcg cacaaagaaa atagttcttt actcgcagga
    11281 aacatcggtt ttccggcatc cgcagttgca gaaaatgcga ccagtgatca atacatttcg
    11341 atggagcttt cttcgttcca attaatgggc gtagaaacat ttaaaccgca tatttccgtc
    11401 atcacgaata tttatgaagc gcatttagat taccatacag accgtagtga atacgttcaa
    11461 gcaaaatggc atatccaaaa aaatcaaaca gcagatgatt tcctagtaat taattgggat
    11521 caagaagagc ttaaaaacct aacaaaacaa actaaagcac aagttattcc gttttcaacc
    11581 acacaacgcc ttggtcaagg aagctacgtg caaaatggca atattatgtt caacgatgaa
    11641 gtgattggcg cacgtgacaa tattttactt ccaggagagc ataatttaga aaatgtgctt
    11701 gcttccgtag cagtagcaaa aacgttaggt gttacaaatg aagaaatcat gcacgtatta
    11761 gaaacgttta aaggtgtaga gcaccggaca caatttgttg tagaatggca aggtcgtaaa
    11821 ttctataacg attcaaaagc aacgaatatt ctagcaactc aaagtgcatt aaaagggttt
    11881 aaaaatccag tcgtgttact ggctggtggg ttggaccgtg gtaattcatt tgacgaatta
    11941 ctaccatttt tcaaaaatgt aaaagcgtta attgtctttg gcgaaacagc agataaaatt
    12001 ggccgcgttg ggaaaatcgc tggcattgac gtacattacg tggataatgt cgaggcagct
    12061 gttccagttg cgtaccgcga atcagcacca ggagatatta tcttactttc accagcatgt
    12121 gcgagttggg atcaataccg aacatttgaa gttcgcggga atgcctatat ggacgcaatc
    12181 ggcgagctaa tagaagaggt ggaaaaatga aagtagcaat aagtggtggc ggtactggtg
    12241 gacacgttta tccagcgctt gctctcatca gagaattaaa aaaaattcat cctgaagcgg
    12301 aatttttata tatcggaaca gaaaaaggcc tagaagctgg aatcgttaaa cgtgaaggga
    12361 ttccgtttga agctattgaa attactggtt tcaaacgttc attatcgtta gaaaatatta
    12421 aaacagtaat gcgttttctg agcggcgcga aaaaaagtaa acaaattttg cgcgatttta
    12481 aaccggatgt cgttatcgga acaggtggtt atgtttgtgg tccagtcgtt tatgcagccg
    12541 caaaacttaa aattcctact ttaatccacg aacaaaatag tgttgctgga ttaacgaata
    12601 aatttttaag ccgctacaca gataaagtag ccatttgttt tgaagaagta agtgattctt
    12661 tcgcatcgga aaaaatcgtt ttcactggta atccacgtgc ttctgaagtt gtaggtgtgg
    12721 actcggaagg tgcactggaa acttacggac tagtttcagg gaagccaact gtgcttgttt
    12781 ttggaggcag tagaggagct cgcggcgtga atgaagcggt agaagctatt ttgccagaat
    12841 ggaataatcg ggattttcag ctactttatg taacgggcga tgtacactat gaaaaaataa
    12901 aagattcttt ggcggagttg aatttgggta atcatattag tgttcaacca tttatttatg
    12961 atatgccaaa aattttaaac gctgtgacgc tcgttgtttc aagagcagga gcgactacac
    13021 ttgcagaact tacagcgcta ggggttccaa gtattttgat acctagtcca tacgtgacag
    13081 caaaccacca agaaaataac gctcgcgctt tagaaaaaaa taatgcagct atcgtaatta
    13141 cagaagcaga attaaaaaat accgatttaa tggcgacagt tgattcgatt ttgaatgacg
    13201 aggcgaaatt aaatggtatg aagctaagtg ctaaacaaat ggggcgccca gatgcagcag
    13261 cgaaattagt agaagcagtc cttagcatta tgaaataaat cgcagaaagg agcgaataaa
    13321 atggctgaaa ataaacgagt aatttcaatt gaaaatcgca taccagaact caaaaaatac
    13381 cgcaaaaaaa aattagtaag acacttagcc attttaatcg gaatttttgt gattttgatc
    13441 gccattaccc tctatttcct ctccccactc agtaaattag ataaaattgc tgtaagtggt
    13501 aataagcaac ttacagagaa tgaagtaaga aaagaaagtg gactcgaaat tggtgagttt
    13561 gtcatcggga taagtaatgg aaaaactgag gataccctca aaaaaaatac ccttattaaa
    13621 gatgctaccg tttctaaaga agggataaat gatgttcaaa ttaatatcac cgaatttaaa
    13681 acgataggct atcaacaaca agatggtaaa tactatgatg tgctagaaag tggcatcatg
    13741 ttaacggatc aaccaagaca attcccaatt ggaaatgatt tgctatttca aaactttaaa
    13801 aacggtaaaa cacttgagaa aatggtagca caaattaata agttaccaaa agatgttgtt
    13861 agttcgatct cggaagtgat ttatagtcca actaaaactg ataaaaacca tattaaatta
    13921 tatatgaacg acgggaatca ggtttccgca gatattagta ctttcgctga gaaaatgcaa
    13981 cattatccag ccattgtcgc tcaacttgct aaaggacaaa aaggagttat tgatattgaa
    14041 gtaggttctt atttccaaag ttattaccaa cagaatgccg agaaaaaggc agccgaagaa
    14101 gcagctaaag agaagaaaga aacaaatgaa taatattttt ttcttctcgc caatttttgg
    14161 caaatttata gataacagat gtttcaaaaa ggtaacaaaa cgatgacctc aagtcaggag
    14221 atgccaacac ttgttcgctt tttgaataaa atgaaaaaaa tatcttaaga atttgccaaa
    14281 aaatgttctt tgtgctttta ttaccttctt tcttagtgta gactgtaaat aagtgatttt
    14341 gtatgttagg cagaatgggc aatcattcta cactgacgcc ataaaaataa agaaatttca
    14401 tagcttttca agaaagttaa aaaaccggct tttgctcggt ataaaaaaat gaaataaata
    14461 catgttaaat gactagaata aaaggaggtg ccgataaatg ggtgatagcg aaatttatgt
    14521 aagtttagac attggaacag cttctgtgaa agtaatcatc gcagaaatgg ctgacgatag
    14581 actcaatatt atcggtgttg ggaatgtcga atcttccggg attaaaaaag gaattattat
    14641 cgacatagac aagactgtag aatccattaa aaaggcaatt gaacaagcag aaagaatggt
    14701 tggcgttgaa atttctcaag taatagttgg ggtagtatcg agtcaagtgc atttagaagc
    14761 ttgccgagga attgtggcag taggtagcga aaatcgtgaa attacagatg aagatgtctg
    14821 gaatgtaatg gatgccgctc aagttgttcc tctatctcct gaaagagaaa ttattaacac
    14881 tattccagat caatttgttg tagatggatt aactgggatt acagatccac gtggaatgat
    14941 tggtgttcgt ctagaaatgg aaggcacatt aatcactggt tcaaaaacaa ttttacataa
    15001 tacattacgt tgtgtggaac gtgcaggcct tgaaatttct gatattgctt tacaaccact
    15061 tgcagaggca tccatttcct tatcagaaga tgataaagaa tttggaacag cactcgtgaa
    15121 tgttggagca ggaactacaa ccgttagcgt gtttgaacaa ggacgactaa cttatactgg
    15181 tgtcattcca gttggtggag ataatatcac gaaagactta tcacttggac taaacacttc
    15241 tactgcaaat gccgatcgcg ttaaattgga tcatggctat gcattttatg atgatgcttc
    15301 tccagatgaa gtttttgcta ttgatgttat cggtagtgac caaaaacaac attttacaca
    15361 agtagaagca gcagatatta tcgaagcgcg tatggaagaa attttccaat tagtagtgga
    15421 agaacttact cgtgtcggta aaacgcatct tccaggaggt tatgtactaa ctggtggttc
    15481 gatggctatt ccaggagcaa ttgatttggc tggaaaaacc ttagcagcgc atgttagact
    15541 agcgattcct gattatattg gtgttcggga accttccttt acaaccgcag taggcttaat
    15601 taaatatgct tatcaaatgg ctgaattaga aggacgcgac gtaagcagtt cggcaagcga
    15661 acctcgttac gacgatgaag caccaaaaca aaagcaacct aaaccaaaac aaaagaaatc
    15721 agatgacgaa aaagtatcaa cgaaaatgaa gaattttttc ggcgcatttt ttgaataaaa
    15781 gcgaatagct gatagtccag caagaaaatc gtatcgtata aatcggcaaa taggaggcaa
    15841 taatatgtta gaatttgaca ctagttcaga aagtttggca acaattaaag taatcggtgt
    15901 tggcggtggc ggtaacaacg ctgtaaaccg tatgattgag catggtgttc aaggagtaga
    15961 atttatctcc gttaatacag acgctcaagc acttaactta gcaaaagcag aaacaaaatt
    16021 acaaatcggt acaaaattaa cacgtggttt aggcgcggga gctgtacctg aaattggtaa
    16081 aaaagctgca gaagaaagcc gcgaacaaat tgaagaagct ttaaaaggct ctgatatggt
    16141 attcgtaact gctggaatgg gcggcggaac tggaactggt gctgcacctg ttatcgctca
    16201 aatcgcaaaa gaaatgggcg ccctaactgt aggtgttgtt actcgaccat ttggttttga
    16261 aggaccaaaa cgtacgaaac aagccttaac tggaacagaa gcaatgaaag aagcggtaga
    16321 tactttaatt gttattccta acgaccgtct acttcaaatt gtggataaaa acacgccaat
    16381 gcttgaagct ttccgtgaag cagataatgt tttacgtcaa ggtgtacaag gtatttctga
    16441 tttgattgcc gttccaggtt taattaactt agactttgcc gatgtgaaaa caattatgac
    16501 taatcgtggt tctgccctta tgggaatcgg tattgcaact ggtgaaaacc gtgccgctga
    16561 agctgcgaaa aaagcaattt cttctccact tcttgaaact tctgttgacg gagcaaaagg
    16621 tgtcctaatg aatattacag gcggatctaa cctaagcctt tatgaagtac aagaagcagc
    16681 agaaatcgta tcaagtgcat cagatgaaga tgtaaacatg attttcggtt ctgttattaa
    16741 cgacgaatta aaagatgaac tgattgtaac tgttattgca acaggttttg atgaagaaaa
    16801 gcaagcgcaa caacaagcgc aagcaaatcg ccgtccaaat caatctatcc aagtaaatcg
    16861 tcctaattat gctgtacaag acgaacaaca aaatgattac gcgcaaaatg cgccacaaca
    16921 agcaaatgca ccagttcatg aacaacaagc tgaaccacaa caaaatagtt cagatgttga
    16981 tgtaccagca tttatccgta accgtaaccg tcgcggataa tacttataac ataatttcac
    17041 ccggccactt ttgaagcatt gccaagtgac cgggtatctg attataacaa gaagcgtttt
    17101 aaataaagca cttcgggaat tatataaggt gataaaaaat gacaaaacaa gctaatttac
    17161 aaaaagtaac ggcacaaata gagcgtgcct gtgaagaaag taatcgtcag ccggaagatg
    17221 taacgttagt agctgttaca aaaacgattg atgtagctgg aatcacagag ctttatgatt
    17281 taggtatccg tcactttggt gaaaatcgtg cagacgtttt ccaagaaaaa acagtagcac
    17341 ttgcagataa agaagacatt tgttggcatt acattggttc tttacaaaca cgtaaagtaa
    17401 aagatgtttt accaaaaatc gattatttgc attcgcttga ccgatcatcg ctagcaaagg
    17461 aaatcgaaaa gcgagctact aaaccagtga aatgtttcct tcaagtgaat atttctggtg
    17521 aggaaagcaa acatggtttt tccaaagaag aggcgctatc ttttttacaa gaagcgaatt
    17581 ttacgttcat tgagattgtt ggtttaatga caatggcacc tattacaaat agcgacatag
    17641 agctgcatca cgtatttcat gagttaaagc aattgcagca agaaattcat gcgcttcagt
    17701 taaacaatat tccatgtaca gagttatcta tggggatgac gaatgattat ggagttgcaa
    17761 ttacggaagg tgcaacattt atacgagtag gaagagcttt ggtgagtgac gataatatgg
    17821 aggtgtaaca aatgggacta tcgaataaat ttaagtcatt ctttttctta gatgaagaag
    17881 aggaatatta tgaagaggaa gtagcgaggg aaccagaacc tatgcaaaag aaaacgaaga
    17941 aagaaaaacc aaataaaaat cgtttttatg ctgtagaaga agatgatgcg aaggtggtta
    18001 gtatgcaggg agctcagttt tctagtcgta tggtacttgc tgaaccgcgt gtgtatgcag
    18061 aggcacaaga acttgcggat tatttgaaag aatataaatc tgttgttgta aacttgcaac
    18121 gtattagcca tgatcaagcg acacgtattg tcgatttctt gagtggaaca gtatatgcat
    18181 taggtggaga tattcaacgc gttggcaata atattttctt atgtactcca gacaatgtgg
    18241 aagtggatgg ctctatttcc gaaatgctcg atgaacaaaa ctttatgtga tgaagtagag
    18301 gtgtgagcta gattgcaaag tattttatat caagtggtgg aaatcatttt gtttattatc
    18361 agatggttgc caacactcat gtttatttat ttcttgatga gctggtttcc cggtgcaaga
    18421 gaatcaaaaa tcggccaatt tttagctcgt atttttgaac cgattttaga gccttttaga
    18481 aggattattc cgccgattgg tatgtttgat atttcgtccc ttgtggctta tttcattttc
    18541 caatacgcga tgagagtttt aaccggttta attcaagtgt atgtcattcc aatgctattt
    18601 taaaaagcgc gcccgttttc aaaatgggtg gcttttttta ttaataagca agattagcct
    18661 agtagcagct gttttcatgg tataataggg ctaaagactc ggaacggatt gaaagggaga
    18721 aattaggatg gatggaattt atcagcattt tcgcgcggaa gaatacgcat ttattgataa
    18781 gattttaggg attacgatgc aagttgagaa tgaatacacg ccacaactta cggatttctt
    18841 ggatccgagg cagcgtttta ttaccgaaac agttatcggt ggttatgatg agatcaatgt
    18901 acagtttttt ggtggagtgg cgcacgcaga acgacggcgc gcactgattt atccagatta
    18961 ttatacgccg acagaagcgg attttgagat tgctttgttc catatacgct acccggtaaa
    19021 attcacgacc ctcacacatc aaaaaatcct tggaacactg atgtcgcttg gaatgaagcg
    19081 tgatattttt ggagatattt taaataatgg cactgaatgg cagttattag tagaaagtac
    19141 aatgaaggat tatttaacat tacaacttga aaaaatcggg aaagtaaatg tgatgttaga
    19201 ggaaacggat ttagctaatg ctgtttatgc cccggtcgtt tgggaagaaa tgggcttaac
    19261 tgtttctagt atgcgacttg acgtgattat tagtaatgca catcatattt ctagacagaa
    19321 ggcgaaacaa ttggttactg ctggattagt gaaagtaaac tggaaaacag tggaaaatcc
    19381 ggattttgaa tgtgaagaag aagatgtatt gtctgctcgc ggatatggtc gggtaaaagt
    19441 actatcaact ggcggcagaa cgaaaaaaga taaaattcgg attgaaattg gctatttaaa
    19501 ataaaaacga aagcagttgc tgctttcgtt tcagatatag taatgagtag tacctaatgt
    19561 catatgttgt caaatggtct tatgttatta ttaaatatga aaagagagtc atgcgctaag
    19621 atgactctca agtataagcc catttaaggt ggcagctagc ttaatagatt ataaaaataa
    19681 ccactaaacc gaccaaagtt tatgagtggt tattttttgt tattttgact gttcaatagc
    19741 aacaccaggg ttgcaaaaga cagtgcttca taaacagtca tgggttatcc tttccaggca
    19801 atcctaacaa aaatattcat agcatcaccc tttcttgttg taagagctag ccaccaccat
    19861 aaacttgctt actctttttg tatagcattg aaactctttt ggaaaaaggt taaatgctat
    19921 ggttatgtac taaaaatatt ttttatcgcg agtttctaca aaacaacgaa caataaagct
    19981 aactataatg atcaatatat agatgtg
//
LOCUS       DABQVC010000029        19710 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.029,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000029 DABQVC010000000
VERSION     DABQVC010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 19710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19710
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.029"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..700
                     /locus_tag="IBJ56_000751"
     CDS             <1..700
                     /locus_tag="IBJ56_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAM3417015.1"
                     /translation="FLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSL
                     EKERVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALY
                     LMDFPQLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAI
                     ETYILNPKLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILEVRNAED
                     LKKRTIFGRKKKVD"
     gene            complement(710..1609)
                     /locus_tag="IBJ56_000752"
     CDS             complement(710..1609)
                     /locus_tag="IBJ56_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3417016.1"
                     /translation="MKKVISLIIALAIIITGFWIIFLQFEPTKKEAKEPAVTANKTTK
                     KEQKPVSEIAIPTLFVHGYSGTINSFGGMINRLAEDGDVTKSLVMNVAADGTVSSDGN
                     YDKFSHNPTIQVIFEDNKSSAANQTQWIQNVMKELKNNYHIEKVYAVGHSMGGVSLTS
                     YIEKVGSDKTYPVLEKLVLIGAPLNGLVIGDDGVTAYDLTDSGPKKSSDRYSEFMKNK
                     QKIPTNLHVLNIAGDTLNGTKSDGSVSVASALSGKFIFEGQAASYEEKTFTGKNAAHS
                     KLHENTDVDAEVADFLWGIEKVD"
     gene            complement(1630..2451)
                     /locus_tag="IBJ56_000753"
     CDS             complement(1630..2451)
                     /locus_tag="IBJ56_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3417017.1"
                     /translation="MLKRVFFSIILPLGCLVGAIFILLTINTTYPKAANESIPTIFIH
                     GYRGTDRSLHGMIRRFDQKYDWGTESLTVNVSPDGKISTTGTYNKKEKNPLINIVFED
                     NRATLPQQSMWTKKVMSYLQQNYAIKKFNAVGHSMGGGAWVSYLASYEKNKSYPQVNK
                     IVFLAVPFYPEEYVNGDQQVDIKNANNVHAKFAEKMAKVLPNNTEIMIIGGNLEDGSN
                     SDGEVKLDSVLYGEKLFAHQKVTTHVIKGPQATHSSMHESTVVDKYVGQFLWGEK"
     gene            2609..3067
                     /locus_tag="IBJ56_000754"
     CDS             2609..3067
                     /locus_tag="IBJ56_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HAM3417018.1"
                     /translation="MMKRTGEIVLAIIGLVLSILAQAFIAIIGLLMISGSKGKEGLTT
                     FYNNYYKTMTEWEIPKKEIPDPDRVLDFVQTLSWTALTGGLITLALGIFGIYYIFKNK
                     KPVFAGYLFLAAGVVSLLSTALISFIPALLFIVVAILCFVRKPKSTFSGL"
     gene            3161..3394
                     /locus_tag="IBJ56_000755"
     CDS             3161..3394
                     /locus_tag="IBJ56_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417019.1"
                     /translation="MKNKVGIIAGAVGAVAGVLACAVVYVVKKQQPPTPFDEVNDIRT
                     RYADKEISETELEENNMISEGGVSSLQYEEKVK"
     gene            3622..3936
                     /locus_tag="IBJ56_000756"
     CDS             3622..3936
                     /locus_tag="IBJ56_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417020.1"
                     /translation="MRAILIGVLIILLIAMILIVLLPAILATIGAVLGFWSLKKLLEA
                     RSVGEKVIYGILIGVGALIILANLKGILVVVIIGAIIYFLTRNKNKPRKNDDVFDYPY
                     NK"
     gene            3952..4797
                     /locus_tag="IBJ56_000757"
     CDS             3952..4797
                     /locus_tag="IBJ56_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HAM3417021.1"
                     /translation="MANLFEKMKQWNKEVSEKIEKREEKRRNSVSYYMDKTKQEMKDA
                     ERMVEKERELKSLFYKEYKEMEVYVEKRRHQAEIAKEAGETKLADFALEEVAQYEEQL
                     KATKSHYDQASEQLEKLELRMHEMRLKWKNLKTQHLAEMAEKNATETSEKMDKVIHDM
                     SWGSVSDYHEAQKQRDLAEEAEKKADMSKELSQSFDDLMDELEKKTKKSKEIIKDKAQ
                     NFTTMVDEIIEREKQNFKKPEKASMEDQLNELEKEAAKEKPKEEKEVLIPELEKKEEE
                     NETDK"
     gene            4986..6119
                     /gene="nagA"
                     /locus_tag="IBJ56_000758"
     CDS             4986..6119
                     /gene="nagA"
                     /locus_tag="IBJ56_000758"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HAM3417022.1"
                     /translation="MTNKVITNATIYTGKGVLENAFVRFDKQILEVGSMADFQADKAE
                     EVIDAKGQKLVPGFIDVHSHGGYSFDAMDADPEALRKQVNGMLNEGITTYFPTTMTQS
                     HENIEKALKVINEVAQTEPVIGGIHLEGPFVSKVFKGAQPEEYIQAPDLELFKKWFDI
                     SGGLIKLVTYAPEHDTSADFENLCFELGVVPSIGHSNDVREHLKTSKATHATHLYNAC
                     HRMTHREPGVPGHVLLERGINAELIVDGIHVHPDMVKLAYQMKGPEHLCIITDSMRAK
                     GMPEGKSELGGQTVIVKDKQARLEDGTLAGSVLTYDDGFRNMIKFTGCSVEEAVLMSS
                     GNQAREFNLTQKGAIEAGKDADFNLLDEDLHITATYSFGKKHS"
     gene            6135..6839
                     /locus_tag="IBJ56_000759"
     CDS             6135..6839
                     /locus_tag="IBJ56_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HAM3417023.1"
                     /translation="MQLITTENKLAGSKKALEIIEKGITSGEVNTLGLATGSTPETLY
                     AELVKSDVDTKNVTTTNLDEYVGLAANDPNSYHYYMNELLFSKKAFKESFLPNGEATD
                     AEAECARYEEILSEHPIDIQVLGIGTNGHIGFNEPGTPFDSLTHKVVLTDSTREANKR
                     FFEREEDVPTHAYSMGIKSIMNAKKIILLAFGENKAQAIKETIKGPVDVNCPASVLQN
                     HPDVTVILDNEAASLL"
     gene            6855..7577
                     /locus_tag="IBJ56_000760"
     CDS             6855..7577
                     /locus_tag="IBJ56_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3417024.1"
                     /translation="MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFH
                     VSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTERLEAVTSFTNLMLQEGKVPSTR
                     IVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
                     IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGR
                     PFEFTRSQYVGSRFQFVARIKQ"
     gene            7697..8752
                     /locus_tag="IBJ56_000761"
     CDS             7697..8752
                     /locus_tag="IBJ56_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HAM3417025.1"
                     /translation="MSWMIILICFGASVLLTPLIRKIALYFDITDKPDQRRINIKPIP
                     SLGGLAMFISFTIGMFLLPIENEFLWPLLIAAFVMVLTGLLDDIMEFKARYKLIGQVT
                     AAFIIVFWGNISIDFINLPFGGEIHFGVLSIPLTIIWIVAITNAINLIDGLDGLAAGV
                     STIALLTILGMAFIMGDALVIMIASVLIAGTLGFLPYNFNPAKIFMGDTGALFLGFII
                     SVLSVMGFKNVTFISLIVPILILGVPISDTLFAIIRRMVTKQPIAMADKSHLHHCLLR
                     LGFTHRQTVILIYAIAALFSLFAFIFTMSTLWGSMILIGVLLILIEVLIETLGLVGST
                     YRPLLNLFKLTKEEKID"
     gene            8865..9773
                     /locus_tag="IBJ56_000762"
     CDS             8865..9773
                     /locus_tag="IBJ56_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HAM3417026.1"
                     /translation="MEIIATADSMKQAEQLLRAGVDRLYVGNSQFGLRLPHSFSVEEL
                     REIVHLAHQEGKKVTVAVNSLMHNEHMEELPGFLEHLADMKVDAVTCGDPGAIMLLSE
                     MAQPIPFIYDAQTFVTSAEQISFWEKQGAIGAVLARELTEGEIKAIASSLTIPVEVLV
                     YGPTCIHQSKRKLVTNYERIVELEDDTSKERGLYLREPNDETSQLPIYEDESGTHIFA
                     SEDVSLVPYLADLYEAGLKTWKLDGVLAESENFVQIASLLVEAKEAVMKGQFVAEYFV
                     NKLTELQPPTRKLDAGFYLKNPDDVK"
     gene            9788..11014
                     /locus_tag="IBJ56_000763"
     CDS             9788..11014
                     /locus_tag="IBJ56_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HAM3417027.1"
                     /translation="MSKILKKPEVLAPAGNLEKLKIAIRYGADAVYIGGQAFGLRSRA
                     GNFSFEEMKEGIAFAHERNAKVYVAANMVAHAGDTEGAGEFFRTLRDIGIDAVIVSDP
                     ALISICFQDAPGLPVHLSTQASATNYKTLEFWKKQGLERVVLAREVSMQEIQEIGEKT
                     DVEMEAFIHGAMCISYSGRCTLSNHMANRDANRGGCAQSCRWKYDLFEIDNGVSKNLV
                     DTDEEPFSMSAVDLSMIKYIPDMVNAGVDSLKIEGRMKSIHYVSTVASVYRRAVDAYC
                     ADPENYVFDPAWEEELWKVAQRELSTGFFYKEPTEDEQLFGKTRKIPQYAFAAQVLEY
                     DEKTKIATLQQRNNFGVGEEIEFYGPGDTGFKQIVEVLWNEDGVEIDRAPNAMMTIKM
                     PVDKPVKPFYFMRKKK"
     gene            11098..11655
                     /locus_tag="IBJ56_000764"
     CDS             11098..11655
                     /locus_tag="IBJ56_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HAM3417028.1"
                     /translation="MIGWIIAIAVVVILVLIYFGLYNSLVKYRNRVDETWAQIDVQLK
                     RRFDLIPNLVETVKGYAKHEKETLTQVIEARNKMMEVPADNRQGQIEADNMLSGALKS
                     IFALGEAYPDLKANTSFIELQHELTTTENKVAYSRQLYNTTVMTYNTKVQSVPTNIVA
                     KLHNFTERDMLSIPEVERVAPKVEF"
     gene            11678..12592
                     /gene="htpX"
                     /locus_tag="IBJ56_000765"
     CDS             11678..12592
                     /gene="htpX"
                     /locus_tag="IBJ56_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HAM3417029.1"
                     /translation="MLFEQIAANKRKTIFIILGFFIFVLMVGAAIGIIVWNNYLNGLI
                     LAAVIGAFYILIMVMSSSSVVMAMNHAKEVTSKDQAPVLWDTVESMAMVAGIPMPKVY
                     IVEDASPNAFATGISPEKGAVAVTRGLLNKLERYELEGVIAHEISHIRNYDIRLSTIA
                     IALVAVIAILSDLAMRMIFWGSLTGGRNNRKSDNNNSGGAQAIIYIVALIFVILAPII
                     ATAIQFALSRNREYLADASAVELTRNPDGLIQALQKISGDSKKMEEVSASSESIYFAS
                     PLKSKKNKPGLFDSHPPISSRIERLENM"
     gene            complement(12630..13448)
                     /locus_tag="IBJ56_000766"
     CDS             complement(12630..13448)
                     /locus_tag="IBJ56_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HAM3417030.1"
                     /translation="MINQNLYYQSVANSKPIEIYLFFDPACDDCWNIEANMLRLQMEY
                     GNYFKLRYVLHNNLQTFVCKQKRAGNSNLSLKEQQIGAHLSYISCLAVKAAELQGKKQ
                     GITFLRKIQAAYFLENKDIASEEVLYDIAVSTGLDLSEFKKDLASTVAKRAYIGDQKV
                     AQEMEIHENPTVVFFNKNIEDAGLKLSGLHRYEVYVHVLSELLNDAPQPEERPQMEEY
                     LAKVKVTSSATMADFYGVSEQQIERQMKKWRLQQKVELIDAPDGQAHWKYIGNL"
     gene            complement(13686..14270)
                     /locus_tag="IBJ56_000767"
     CDS             complement(13686..14270)
                     /locus_tag="IBJ56_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HAM3417031.1"
                     /translation="MVKELEIEFRNLLTKEEYDTLIESFRVKEEDFFEQTNYYLDTAN
                     FGLKERHSALRIRQLETQYQLTLKTPEARGLMETTQILGEDQASAIISGANIPVGPVR
                     DTLKELGINHEDLQVFGSLKTIRAEKDYKKGLLVFDKNFYGSISDFDLEYEVSDYDKG
                     KEVFDKLLKEYQITNQPAENKVARFYHHVYENNK"
     gene            complement(14287..14754)
                     /locus_tag="IBJ56_000768"
     CDS             complement(14287..14754)
                     /locus_tag="IBJ56_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAM3417032.1"
                     /translation="MILTLLQNGDYETARTQALAELKNNSDNAELHYYAAWAHDALGK
                     EDAAIPFYEKAIQLGLPVDSRKEAYIGLGSTYRITGQPEKASLLFQTALQEFPDNNAL
                     RTFSVMAKYNQGLEKEALQEALILLTQTTSDADILSYKKAIQFYAQDLDATFH"
     gene            14913..15581
                     /locus_tag="IBJ56_000769"
     CDS             14913..15581
                     /locus_tag="IBJ56_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HAM3417033.1"
                     /translation="MNHWEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGR
                     VKPVASILDKANQKHIALDHLVEEMQDIAGLRMMCQFVDDIEVVVRLLRQRNDFRIVE
                     ERDYITNKKPSGYRSYHVVIEYPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKY
                     QGEFPEAINKRLKRAAEAAFQLDEEMSQIREEIQEAQVYFSQNKDVSKDKKAVHQVMP
                     KKNK"
     gene            15613..16407
                     /locus_tag="IBJ56_000770"
     CDS             15613..16407
                     /locus_tag="IBJ56_000770"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HAM3417034.1"
                     /translation="MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGG
                     DGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEANKLVKLLAKGEYQKVSYPL
                     LKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT
                     TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQ
                     ISVDHLSILHRDVQEIRYEVSAKKIHFARFKSFPFWRRVHDSFIED"
     gene            16426..17316
                     /locus_tag="IBJ56_000771"
     CDS             16426..17316
                     /locus_tag="IBJ56_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HAM3417035.1"
                     /translation="MFLEWKVETEEDGLLLRTFLKSKHISKQLLTAVKFGAEGKIEVN
                     NEEQNVLYHVKAGDKVRLTFPTEQQNERLLAEYTDLDIIFEDDFLLIINKPAGMASIP
                     SQYHPNGSVANFVKGHYETQGLTNAIHIVTRLDRETSGLMLIAKNRFAHARLSTFLQK
                     GLLKRRYQAFTSGVLVEQKGSIEAPIGRKEVSIMERFVTPEGKYAKTNYEVLARYRAF
                     DHVAIQLETGRTHQIRVHFSYIGHPLIGDDMYGGDTNLLKRQALHSCHLHLVHPLTEK
                     YMAFDLPLPADMEEIIQKSK"
     gene            17394..18182
                     /gene="fabI"
                     /locus_tag="IBJ56_000772"
     CDS             17394..18182
                     /gene="fabI"
                     /locus_tag="IBJ56_000772"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HAM3417036.1"
                     /translation="MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDR
                     AKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKTGKLSGLAHCIAFANK
                     DFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVE
                     NYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEE
                     RAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF"
     gene            complement(18210..19484)
                     /gene="dltD"
                     /locus_tag="IBJ56_000773"
     CDS             complement(18210..19484)
                     /gene="dltD"
                     /locus_tag="IBJ56_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HAM3417037.1"
                     /translation="MKKKLWMTFGPLLVAFVVFLFVLFGPSSLFSKVSSETVEKSATS
                     MNESVIQGLDIQKKALQEGNYLPIYGSSELSRVDPFHPSVVSKKYNQGYTPFLLGRPG
                     TQSLSHFLDVNALGDDLKGKKVAVVLSPQWFQPKGVSDPSFGANFSPLHAYKFALEDT
                     KNTPERRYAAKRLLSFQVVQSDSTLKKLLENIVAKGPKKPHDPKLLNITGNIELKILE
                     RKDDLESKYIIGSKQDRVNKGLKELPETLDYQKLDELAKETGERSTGNNPFQVKEHYY
                     QKKIKPIEGKLKNSRKDLRYDQSPEFADLQLLMDAFKKAGADVIFINPPINGKWIDYI
                     GMDKQGLDDYYAKTKEQIESQGFRYYSLEEYQNDAFFLEDPIHLSWRGWVKIDQVLAD
                     FVKEPMQTNYKPTPKEYYFKEHPENGPKKDRK"
     gene            complement(19484..>19710)
                     /gene="dltC"
                     /locus_tag="IBJ56_000774"
     CDS             complement(19484..>19710)
                     /gene="dltC"
                     /locus_tag="IBJ56_000774"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltC"
                     /protein_id="HAM3417038.1"
                     /translation="ENVLEILEEITETDEVVQNTNIKLFDEGLLDSMATVQLLIEIEE
                     KLDITVPVSEFDRDEWATPEMIITQLEALK"
BASE COUNT         6318 a         3260 c         3945 g         6187 t
ORIGIN      
        1 gtttttaaaa gaatctaaca tacagaaata tttgcaagct ggggtcgatt ttattattgc
       61 ttcactatcc ggtattggat ctgtcggatt atctttcttc ttagcattaa ttcttagttt
      121 atttttctct ttggaaaaag aacgagtaac ttcttttact gggcagttca tgacaagtaa
      181 ggtaggcttt atttttaaag aggctgcatt ttttggaaag aaatttgttt cgacttttgg
      241 agtcgtttta gaggcgcaat taatgatcgc tttagtaaac acatttatta cgacaatcgc
      301 gctttattta atggactttc cacagttgct tagtttatcc attatggttt tcgtcttagg
      361 attaatcccc gttgcggggg tgattatttc ctgtattcca ctggtgctta tagcttattc
      421 tgttggagga tttcaagatg tggtgtacat tttaattacc gttgtcattg ttcatgcaat
      481 agagacctac attttaaatc caaaattaat gtcatctaaa acgaacttac cggtatttta
      541 cacatttatt attttgattt tctcggaaac attctttgga gtgtgggggc taatcgtagg
      601 aattccagtc tttgtattct tattagatat tttagaagtg agaaatgcag aagacttaaa
      661 aaaacgaaca atatttggac gcaagaaaaa agtagattag gcgatagcct taatctactt
      721 tttctattcc ccataaaaag tcagctactt cagcatcaac atcggtattt tcgtggagtt
      781 tactatgagc tgcattctta cctgtgaatg ttttttcttc gtaacttgct gcctggcctt
      841 caaaaatgaa tttgccagat aaggcgctcg caacagaaac gctaccatcg ctttttgttc
      901 cgtttaaagt atcacctgca atatttaata cgtgcaaatt agtagggatt ttttgtttgt
      961 ttttcatgaa ttcactataa cggtctgaag atttttttgg ccctgaatct gtaaggtcgt
     1021 aagctgtaac accatcatca ccaattacta gtccattaag tggagcaccg attaaaacaa
     1081 gtttttcaag aacaggataa gttttatcac tacctacttt ttcaatgtaa cttgttaaac
     1141 taacgccacc catggaatga ccaactgcgt atactttttc gatatgataa ttatttttta
     1201 attctttcat gacattttga atccattgtg tttgatttgc cgctgagctt ttattatctt
     1261 caaaaataac ttgaatagta gggttatgac taaacttatc atagtttcca tcagagctta
     1321 cagtcccatc agctgcaaca ttcataacaa gtgattttgt tacatccccg tcttcagcaa
     1381 gacgattaat catacctccg aatgaattaa ttgttccaga atacccatga acaaacagag
     1441 tagggattgc tatttctgaa acaggttttt gttctttttt tgttgtttta tttgctgtca
     1501 cagcaggctc tttagcttct tttttagtcg gctcaaattg aagaaaaatt atccaaaagc
     1561 cagtaatgat aatggctaat gcgataatta aactaataac ttttttcatt tcaaacatcc
     1621 tttaatcgtt tatttctcgc cccataaaaa ttgaccaaca tacttatcca ctacagtaga
     1681 ttcatgcata ctactatgag tagcttgtgg tcctttaatg acatgtgtcg ttaccttttg
     1741 atgtgcaaat aatttttcac catataaaac actatctaat ttcacttcac catcactatt
     1801 tgaaccatct tccaaattac caccaataat cataatttca gtattgttgg gtaaaacttt
     1861 ggccattttc tcagcaaatt tagcatgcac attattggca tttttaatat caacctgctg
     1921 atcgccattc acatattctt ccggataaaa tggaactgca agaaacacaa ttttatttac
     1981 ttgtggatag gacttgtttt tctcgtaact agctaaataa gaaacccaag caccgccacc
     2041 cattgaatga cctactgcat taaatttttt tatggcataa ttttgttgta aataagacat
     2101 tacctttttt gtccacattg attgttgagg aagcgttgct cgattatctt caaaaacaat
     2161 gttgataagt ggattttttt cttttttgtt ataagttcca gtagtagaaa tttttccatc
     2221 tgggcttaca tttacggtca atgactctgt accccaatca tacttttggt caaagcgacg
     2281 tatcattccg tgaagcgagc ggtctgtccc acgataacca tgtataaaaa tggtagggat
     2341 ggattcattg gctgcttttg gataagtcgt gttaatcgtc agtaaaataa aaattgctcc
     2401 aactaaacaa cctaatggta agataatgga gaagaacacg cgctttagca ttattttacg
     2461 cccctttaaa attcgttatg aacaaattat acattttttt tatagaaaac gcacgattgg
     2521 tctacttttt ctactaattt aatggtttca tctcatgaac acatatagta tactggaaaa
     2581 ataagcgaag aaacggaggc atattcatat gatgaaacga actggtgaga tagtactcgc
     2641 tattattggt cttgttttaa gtatactcgc acaagcattt attgctatta ttggtctatt
     2701 gatgataagc ggttcaaaag gaaaagaagg tttaacaact ttctacaaca actactacaa
     2761 aacaatgact gaatgggaaa tcccgaaaaa agagattcct gatcccgatc gtgtactaga
     2821 ttttgtgcaa acattatctt ggactgcatt aacaggaggc ttaattacgc tcgcacttgg
     2881 tatctttggg atttactaca tattcaaaaa taaaaaacca gtttttgctg gatatttatt
     2941 tttagcagca ggcgttgtat cgttgctttc tacagcacta attagtttca ttcctgcgtt
     3001 attattcatt gttgttgcga tactttgttt tgtccgcaaa ccgaagagca ctttttctgg
     3061 attataattc gaaacgagtt tgaacttttc aagctcgttt ttgttttact tctacttttt
     3121 tagggaataa aatagtggat ttcaagagga ggttgatagt gtgaaaaata aagtaggaat
     3181 tattgccgga gccgtgggag ctgtcgctgg agttttagct tgtgcagtag tatacgtggt
     3241 taaaaagcaa cagccgccta ccccttttga tgaggtaaat gatattcgga cccgttacgc
     3301 tgacaaagaa atttctgaaa cagaactgga agaaaataac atgatttcag aaggtggcgt
     3361 ttcatctctt caatatgaag aaaaagtcaa ataatgagaa tgcagtttgt gtcttgtgtt
     3421 acgcgagaac aagctgtttt tttatgtaga aaacactgct tattatagta gattatgtta
     3481 tcctgtagtt agacaatagg actcaagttg taggtgaatt tccttctaca gcgggttatt
     3541 atacttgata gatagggtta tgataggtac agtaataaaa gaaaatatat cagctacatt
     3601 tggaagttag gaggtaggcg tatgagagca atattgattg gcgtattaat aattttacta
     3661 attgcgatga tacttatagt tttattgcca gcgatactag caacaattgg tgcagtgctc
     3721 ggcttttggt cacttaagaa gctacttgaa gcaaggtccg taggtgaaaa agttatttat
     3781 ggtattctaa ttggtgttgg tgccttaata attctagcta acttaaaagg aattctggtt
     3841 gttgtaatta tcggagcaat catttacttc ctaactagaa ataaaaataa accaagaaaa
     3901 aatgatgacg tattcgacta cccatacaat aaataattgg aggagaaaaa aatggcaaac
     3961 ctttttgaaa aaatgaaaca atggaataaa gaagttagtg aaaaaatcga gaaacgtgaa
     4021 gaaaaacgtc gtaattcggt aagttactat atggataaaa caaaacaaga aatgaaagac
     4081 gcagaacgca tggtagaaaa agaacgcgaa ctgaaatctc ttttctataa agaatataaa
     4141 gaaatggaag tttatgtaga aaaacgccgt catcaagctg aaattgcaaa agaagctggt
     4201 gaaactaaat tagctgattt tgcattagaa gaagtagctc aatatgaaga acaattaaaa
     4261 gcaactaaat ctcattatga tcaagcttct gaacaacttg aaaaattaga actacgcatg
     4321 cacgaaatgc gcctaaaatg gaaaaacctt aaaacacaac atttagctga aatggctgaa
     4381 aaaaatgcaa cagaaacttc cgaaaaaatg gacaaagtta tccatgatat gagctggggt
     4441 agcgtaagtg actatcacga agcacaaaaa caacgcgatc tagctgaaga agctgaaaag
     4501 aaagctgata tgagcaaaga actttctcaa tcctttgatg atctaatgga cgaactagaa
     4561 aagaaaacaa agaaaagcaa agaaatcatc aaagataaag cgcaaaactt tacaactatg
     4621 gtagatgaaa ttattgaacg cgaaaaacaa aatttcaaaa aaccagaaaa agcttcgatg
     4681 gaagatcaat taaatgaact tgaaaaagaa gctgcaaaag aaaaaccaaa agaagaaaaa
     4741 gaagtattaa ttccagaatt agagaaaaaa gaagaagaaa acgaaacaga taaataaaag
     4801 taattagcgc agaataatca ttctgcgctt ttttataaca aaacgctatg ggccttctaa
     4861 atatgctcgt agcttttttg gttatattac tttttttcgg gtaaatagga aaagataagt
     4921 tgcattttaa tagatacgtg ctataataat tggtatagac cgatttaaca aggaggcaat
     4981 atgtaatgac taataaagta attactaacg ctacaattta tactggtaaa ggtgttctag
     5041 aaaatgcttt cgtacgtttt gacaaacaaa ttttagaggt tggctcgatg gctgatttcc
     5101 aagcggacaa agcagaagaa gtaatcgatg ccaaaggaca aaaacttgtt ccaggtttca
     5161 ttgatgttca ttcccacggt ggttatagtt ttgacgcaat ggatgcagat ccagaagcac
     5221 ttagaaaaca agtgaatgga atgttaaatg aaggaattac tacttacttc ccaacaacga
     5281 tgacacaatc acatgaaaat attgaaaaag cattaaaagt gatcaatgag gttgctcaaa
     5341 cagaacctgt tattggtgga attcatttgg aaggtccatt tgtttctaaa gtctttaaag
     5401 gcgcacaacc agaagaatat attcaagcac ctgacttgga acttttcaaa aagtggtttg
     5461 atatttctgg tggtttaatt aaattagtaa catatgcacc agaacatgat acttcagctg
     5521 attttgaaaa tttgtgtttt gaactagggg ttgttccgag tattggtcac tctaatgatg
     5581 ttcgtgagca cttgaaaaca agtaaagcga cacacgcgac acatttatat aatgcttgtc
     5641 accgtatgac gcaccgtgag ccaggcgttc caggtcatgt tttactagaa cgcggtatta
     5701 atgcagaact aatcgttgat ggcattcacg ttcatcctga tatggtgaaa ttagcttatc
     5761 aaatgaaagg gccagaacat ttatgcatta tcactgactc catgcgagca aaaggtatgc
     5821 cagaagggaa atctgaactt ggcggccaaa ctgttatcgt gaaagataaa caagctcgtt
     5881 tagaagatgg aactttagct ggaagtgtac tcacttatga cgatggcttc cgcaacatga
     5941 ttaaatttac tggatgctcg gtagaagagg cagttcttat gtcttctgga aaccaagcac
     6001 gcgaatttaa tttaacacaa aaaggtgcaa tcgaggctgg taaggatgca gatttcaact
     6061 tacttgacga agatttacac attacagcaa cttattcatt cggaaaaaaa cattcttgag
     6121 aggaagataa taaaatgcaa cttatcacaa cagaaaataa attagcaggt tctaaaaaag
     6181 cactagaaat tattgaaaaa ggaattacat caggtgaagt aaacacactt ggcctagcaa
     6241 ctggtagcac accagaaaca ctttatgcag agcttgtaaa aagcgatgtt gacacaaaaa
     6301 atgtcacaac aacgaactta gatgaatatg taggtcttgc ggcaaacgat ccaaacagtt
     6361 atcattacta tatgaatgaa ttgttattct ctaaaaaagc atttaaagaa agtttcttac
     6421 ctaacggaga agcgacggat gcagaagcag aatgcgcacg ttatgaagaa attttatctg
     6481 agcacccaat tgatattcaa gtgcttggaa ttggaacaaa cggccatatt ggttttaacg
     6541 aaccaggaac tccttttgat tcgttaacac ataaagtggt tttaacagat tccactcgtg
     6601 aagctaataa acgctttttc gaaagagaag aagatgttcc aacacatgct tattctatgg
     6661 gaattaaatc catcatgaat gcgaagaaaa ttatcctact tgcttttggt gaaaacaaag
     6721 cacaagcaat caaagaaact attaaaggac ctgtagatgt gaattgtcct gcttctgtac
     6781 ttcaaaatca tccagatgtt actgtgattc ttgacaacga ggcggcgtca cttctataag
     6841 aagagggcgg gaaaatgatc gataaacaat caggaatacc gatttacatt cagattcaaa
     6901 gtgaaattaa aaagaaaatg gaagatggtg tttggaaagt tggcacttct attccagctg
     6961 aacgtcaact tgctgaaatg tttcacgtta gccgaatgac ggtaagacaa gccattcaag
     7021 gcctcgttga tgataacatt ttgcaaagac gtgttggtgc cgggaccttt attgcggaaa
     7081 agaaactaac cgaacgactt gaagcggtta cgagttttac gaatttgatg ttacaagagg
     7141 ggaaagttcc ttcgacgcga atcgtatcgt atggcattcg tccggcaagt acgcaagaac
     7201 aagaagcgtt gcaactgcca gaaaacagca atgtaatgaa aattgaacgg attcgttacg
     7261 gcgaccgtgt gccaattctt tatgaagttg ctgccattcc agaaaaaatt gcttcactgc
     7321 ttacaaagga agacattatg gattcccttt ataaagcgat tgaattaaaa cttggtcaac
     7381 caattggaga agcggaacaa atcatggaag cttctttagt atcagaaaaa attgcgccat
     7441 atcttgatgt gaaactcgga tcgccggtta tgaaactcag gcagattaca acattagaag
     7501 acggtcgacc atttgaattt acgcgttccc agtatgtagg tagtagattt caatttgtag
     7561 ctaggattaa acaataaata aaagcttgag gcggaatctg tctgccccaa gcttttttgc
     7621 ataatgattt tcgttgtctt tttgcaaata aaaaagtata atgagacgag taaaaaattt
     7681 gcggggagga ctagccatga gctggatgat tatattgata tgttttggcg cgtccgtatt
     7741 acttacaccg ctaattcgaa aaatagctct atactttgat attacagata aaccagacca
     7801 acgtcgtatt aatattaaac caattccgag tttaggtgga ctagcaatgt ttatcagttt
     7861 tactatcgga atgtttttac tcccaattga aaacgaattc ttatggccgc ttctgattgc
     7921 agcatttgtc atggttttga ctgggctatt agatgatatt atggaattta aagcaagata
     7981 taaattaatc ggccaagtta ccgctgcctt tattattgtg ttttggggta acattagtat
     8041 cgactttatc aacttaccat tcggtgggga aatccatttt ggggtgttaa gtatcccact
     8101 cacaattatt tggattgtag ccattacgaa cgctataaat ctaattgatg gactggacgg
     8161 tcttgccgca ggtgtttcaa ccattgcctt actcactatt ttaggaatgg cgtttattat
     8221 gggagatgca ctagtaatta tgatagcaag tgtgttaatc gctgggacac ttggtttctt
     8281 accttataat tttaatcctg caaaaatttt catgggtgac actggcgcgc ttttcttagg
     8341 ttttattatt tccgtgttat ccgtgatggg attcaaaaat gttacgttta tctctttaat
     8401 cgtaccaatt ttaattttag gtgtaccgat ttctgataca ctttttgcta ttatacgacg
     8461 catggtaacg aaacaaccaa tcgcgatggc agataagtca catttacatc attgtttatt
     8521 acgactaggc ttcacgcatc gtcaaacggt tattttgatt tatgccattg ccgcactatt
     8581 ttctttattt gccttcattt tcacgatgtc gacactgtgg ggttcgatga ttttaatcgg
     8641 tgtactactc attttaattg aagtattgat agagacgctt ggattagtag ggagcacata
     8701 tcgcccatta cttaatttat ttaaattaac caaagaagaa aaaatagatt agagattggt
     8761 cacttagact agtctctttt tttatgccaa aattcttatt gagtaacaag tcttcttgtg
     8821 atacatttat caagtaacgt ttttgtagaa atgaggagaa aaacatggaa atcattgcga
     8881 cagcagattc aatgaaacaa gctgaacaat tgcttcgcgc gggggtagac agactatatg
     8941 taggtaatag ccaatttggt ttaagattgc cgcattcatt ttctgtcgaa gaattacgtg
     9001 aaatagttca tttagcacat caagaaggaa agaaagtaac tgtagcagta aattcgttaa
     9061 tgcataacga acatatggaa gagttaccgg gatttttaga gcatcttgca gatatgaaag
     9121 tggatgcagt aacgtgcggt gatccagggg caattatgct tttgagtgaa atggctcaac
     9181 cgattccgtt tatttatgac gcccaaacat ttgtaactag cgcagaacaa atctcgtttt
     9241 gggaaaaaca aggagcgatt ggtgcggtac ttgctcggga actaacagaa ggcgaaatca
     9301 aagccattgc aagtagcctt actatcccag ttgaagttct ggtttatgga ccaacatgca
     9361 ttcaccaatc gaaacgtaaa ctagtaacga attatgagcg tattgtcgaa ctggaagatg
     9421 atacatcgaa ggaacgtggt ctttatttac gcgaacctaa tgatgaaaca agtcaattac
     9481 caatctatga agatgagtct ggaacacata tttttgcttc cgaagatgtt tcacttgtcc
     9541 cttatttggc ggacttatat gaggctggat tgaaaacatg gaaactagat ggtgttcttg
     9601 cagaatcaga gaattttgtt caaatcgcat cgctgttagt tgaagcgaaa gaagctgtta
     9661 tgaaaggtca atttgtcgca gagtattttg tgaataaatt aacggaactt cagcctccaa
     9721 cacgaaaact agacgcagga ttttatttga aaaatccgga tgatgtgaaa tagggggaat
     9781 agcataaatg agtaaaatat taaaaaaacc agaagtgcta gctccggctg gcaacttaga
     9841 aaaattaaaa attgccattc gctatggtgc ggatgctgta tatattggtg gtcaggcttt
     9901 tggtcttcgg tcacgagcag gtaattttag ctttgaagaa atgaaagaag gtatcgcttt
     9961 tgcgcatgaa cgaaatgcaa aagtgtacgt tgcggcaaat atggttgcgc atgctggtga
    10021 tacagaaggt gctggggaat ttttccgaac attacgcgat attggtattg atgcagtgat
    10081 tgtatcggat ccagcgctca ttagcatttg ttttcaagat gcgccagggt taccagtcca
    10141 cttatctaca caagcctcgg caacaaacta taagacatta gaattttgga agaagcaagg
    10201 tcttgaacga gttgtacttg ctcgtgaagt tagcatgcaa gaaattcaag aaatcggcga
    10261 aaaaacggat gtcgaaatgg aagcatttat ccatggggca atgtgtattt cttattctgg
    10321 tcgttgtact ttatcaaatc atatggctaa tcgtgatgcg aaccgtggcg ggtgtgcgca
    10381 aagttgtcgc tggaaatatg acttgtttga aattgataat ggtgtctcga aaaatttagt
    10441 ggatactgat gaagagccgt tttcaatgag cgcggttgat ttatcaatga ttaaatacat
    10501 tccggatatg gtaaatgctg gtgtggatag tttgaaaatc gaaggacgaa tgaagtccat
    10561 tcattatgtt tcgactgtcg caagtgtata ccgtcgtgcc gtagatgctt actgcgcgga
    10621 cccggaaaat tatgtattcg atccagcttg ggaagaagaa ttatggaaag ttgcacaacg
    10681 cgaactatct acaggatttt tctataaaga accaaccgag gacgaacaac tatttgggaa
    10741 aacgcggaaa attcctcaat atgcttttgc ggcgcaagta ttggaatatg acgagaaaac
    10801 gaaaatcgct actttacagc aacgaaataa ttttggtgtt ggagaagaaa ttgaatttta
    10861 cgggccagga gatactggat ttaagcagat tgtagaagta ctttggaatg aagatggtgt
    10921 agaaattgac cgtgctccaa atgcaatgat gaccattaaa atgccggtag ataaacctgt
    10981 gaagccattt tactttatgc ggaagaaaaa ataaaaatct catgctgcag taggattgtc
    11041 gtgtactccc taagtaaggt ataatggggt aagtacatat gaaggaggag attaattatg
    11101 ataggatgga ttattgctat cgctgttgtt gttattttag tattgattta ttttggtcta
    11161 tacaacagcc ttgtaaaata ccgtaaccgt gtggatgaaa cttgggcgca aattgacgta
    11221 caattaaaac gtagatttga tttaattcct aatttagttg aaacagttaa agggtatgca
    11281 aaacatgaaa aagaaacatt aacacaagta attgaagctc gtaataaaat gatggaagtt
    11341 cctgctgaca atcgtcaagg tcaaatcgaa gcggacaata tgttaagtgg agcgcttaaa
    11401 tccatttttg cattaggaga agcttaccca gatttaaaag caaatacttc tttcatcgaa
    11461 ttgcaacatg aattaactac tacggaaaat aaagtggctt attctcgcca actttataat
    11521 acaaccgtaa tgacttacaa cacaaaagta caatctgtac caacaaacat cgttgcaaaa
    11581 ctgcataact ttacagaacg tgacatgctt tctattcctg aagtagaacg cgttgcacca
    11641 aaagtagagt tttaagccat gaaggagagc gaaaattatg ctatttgaac aaattgcagc
    11701 aaataagcga aaaacaattt ttattattct tggctttttc attttcgttc ttatggttgg
    11761 cgctgctata ggtataattg tttggaataa ctatctgaat gggctcatac tcgcggcagt
    11821 gattggtgca ttttatattt tgattatggt aatgagcagt tcatctgttg tcatggcgat
    11881 gaaccatgcg aaagaagtta catccaaaga tcaagcgcca gttttgtggg atacagtaga
    11941 gagtatggca atggttgctg gtattccgat gccaaaagta tatatcgttg aagatgcaag
    12001 tccgaacgca tttgcgacgg ggatttctcc tgaaaaagga gccgtggcgg ttactagagg
    12061 attgcttaat aaattagaac gttatgaact tgagggcgtt attgcgcatg aaatttctca
    12121 tattcgtaat tatgatattc gattatcaac gattgccatt gcgctagtag ctgttattgc
    12181 gattcttagt gatttagcta tgcgaatgat tttctgggga agcctaactg gtggcagaaa
    12241 taatcgtaag agtgacaata ataacagtgg cggggcacaa gcgattatct atatcgttgc
    12301 actcatattt gttattttgg cgcctattat tgcaacagct atccaatttg ctttatctcg
    12361 taatagagag tatttagctg atgctagtgc ggtagaatta accagaaatc ctgatggact
    12421 tatccaagct ttacaaaaaa tcagcggaga ttcgaaaaaa atggaagaag ttagtgcttc
    12481 tagtgagtcc atttactttg cgtcacctct aaagtctaaa aaaaataagc caggtctttt
    12541 tgactctcat ccgccaatta gttcgcggat tgaacgctta gaaaatatgt aaaaaaaaga
    12601 agcaacccag gaatgggggt gcttcttttt tataagtttc cgatgtattt ccagtgagcc
    12661 tggccatctg gagcatcgat taattctact ttttgttgga gacgccattt tttcatttga
    12721 cgctcgattt gttgttcaga aacaccataa aaatctgcca tagtagcgga agaagtaact
    12781 tttacttttg ccaagtattc ttccatttgc gggcgttctt ctggttgtgg ggcatcattt
    12841 aaaagctcgg ataaaacatg cacataaact tcataacgat gaagcccact tagttttaat
    12901 ccagcatctt ctatattttt attgaaaaag actacggtag gattttcatg aatttccatt
    12961 tcttgagcta ctttttgatc gccaatataa gcacgcttgg caactgtaga agctagatct
    13021 tttttgaatt ctgataaatc tagaccggtg gaaacggcga tatcataaag tacttcttcg
    13081 ctagcgatat ctttattttc aaggaagtag gctgcttgta ttttgcgcaa gaatgtaatt
    13141 ccttgttttt ttccttgtag ttcagcggct ttgactgcaa gacaagaaat ataggaaagg
    13201 tgcgccccta tttgttgttc ttttaagctt aggttactat ttcctgcgcg cttttgttta
    13261 catacaaatg tctgcaaatt attatgcaga acatagcgca atttgaaata gttcccatac
    13321 tccatttgta atcggagcat attcgcttca atattccaac agtcatcaca agctggatca
    13381 aaaaatagat aaatttcgat tggcttggaa tttgctactg actgataata taaattttgg
    13441 ttaatcattt gctatcacct gattttcaaa ttctaaatat cttcaaacag atactcattt
    13501 caatgtacca gtgtgaaaag aaataattca ctgctcagta aaagctgata caaaatttgt
    13561 ttttgtaact tacatatcta ttttatcagc gtaatgtaaa tttaacaaat aattgtcatt
    13621 ggcttaacat atttattcgt tattttttaa gaatttgtgt ctttttgcta taaaagtatc
    13681 tattcttact tattattttc atatacgtga tgataaaatc gtgctacttt attttcggca
    13741 ggttgattgg tgatttgata ttctttaagt agtttgtcaa aaacctcttt tcctttatca
    13801 taatcagaca cttcatactc taagtcgaaa tctgatatag aaccataaaa attcttatca
    13861 aacacaagta agcctttttt ataatctttt tctgcgcgaa ttgttttgag tgaaccgaaa
    13921 acctgtaagt cttcatgatt gattcctagt tcttttaacg tgtcacgaac tggtccaact
    13981 ggaatatttg ctccagagat gatggcacta gcttggtcct cgccaagaat ttgagtagtt
    14041 tccatcagtc cacgtgcttc tggggttttg agtgttaatt ggtactgtgt ttctaattgt
    14101 cgaattcgaa gagcggaatg acgttctttt aacccgaaat ttgctgtgtc taaataataa
    14161 tttgtttgct caaagaaatc ttcttctttc actcgaaaac tttctattaa tgtatcgtat
    14221 tcttctttgg ttagtaggtt acgaaattcg atttctagtt ctttgaccat gatagttcag
    14281 ctccctttaa tgaaatgtcg catctaaatc ttgcgcataa aattgaattg ctttcttgta
    14341 acttaaaatg tctgcatcac tcgttgtttg tgtcaagagt attaaggctt cctgcaaagc
    14401 ttctttttct aagccttgat tgtatttagc cataactgaa aaagtacgca aggcattatt
    14461 atctggaaat tcttgtaaag cggtttggaa aagcaggcta gctttttcgg gctgacctgt
    14521 aatacggtaa gtactaccaa ggcctatata tgcttcttta cgagaatcaa ctggaagacc
    14581 gagctgtatg gctttctcat aaaaggggat tgcagcatct tctttaccga gtgcgtcatg
    14641 ggcccatgct gcataataat gaagttctgc gttatcggag ttgtttttta attcagcaag
    14701 tgcttgagtg cgcgcagttt cgtaatcgcc gttttgaagt aatgttagaa tcattttcat
    14761 cctcctttta gttgtcgttt gaatgcttcg gttttatttt accacgggat tgaaaaaaag
    14821 gttactttaa gcaaggtgga ttaactgctt ttgtgttaaa ataaaactga tgttgcataa
    14881 atttaatcat gaatatactt gaggtgagcg atttgaatca ttgggaagac tttttagcgc
    14941 catacaaaca ggctgtggaa gaacttaaaa ttaaacttaa aggaatgcgt tcacaatttg
    15001 agcttgaaaa taatcattcg ccaattgaat ttgttacagg ccgagtgaag ccggttgcga
    15061 gcatattaga taaggccaat caaaagcata ttgcactaga tcacttagta gaagaaatgc
    15121 aggatattgc gggactccgt atgatgtgcc aatttgtaga tgatattgaa gtagtagtgc
    15181 gccttttaag acagcggaat gattttcgaa ttgtagaaga acgcgattat attacaaaca
    15241 agaaacccag tggttaccgc tcctatcacg ttgttattga gtacccagtg gaaacaattc
    15301 aaggagaaaa gaaaatctta gctgaaatcc aaattaggac acttgcaatg aatttttggg
    15361 caacgattga gcattcggta aactacaagt atcaaggcga atttccagaa gcgatcaata
    15421 aacgtttaaa gcgtgctgct gaggctgctt ttcaactaga tgaggaaatg tcgcaaattc
    15481 gcgaagaaat acaagaagcg caagtttatt tttctcaaaa taaagacgta tcaaaggata
    15541 aaaaagcagt gcatcaagta atgccaaaga aaaataagta attagttgta ggaatagggg
    15601 cgaatagaaa taatgaaata tatgattact tccaaagggg acgaaaaatc cgatttgctg
    15661 cgactaaata tgatcgcagg ttttggggaa tatgacatgg aatatgatga cgtagagcct
    15721 gaaattgtta tttctattgg tggagatgga acgtttctgt ctgcttttca tcaatacgag
    15781 gaacgcttgg atgaaattgc ctttataggg attcatactg gtcatctagg cttttatgcg
    15841 gattggagac cagctgaggc aaataaatta gttaagcttt tagcaaaagg agaatatcag
    15901 aaagtttcct atcctcttct caaaacaacc gtgaaatatg ggattggcaa aaaagaagca
    15961 acatatttag cgcttaatga atcaactgta aaaagttcag gaggcccttt tgtagtagat
    16021 gttgtgatta acgatattca ttttgaacga tttcgtggag atggcctttg tatgtcaaca
    16081 cctagtggaa caacggctta caataaatcg ctaggtgggg cacttatgca tccttctatt
    16141 gaagcaatgc agttaacaga gatggcatcg attaataatc gagtgtaccg gacaatcggt
    16201 agcccactag tttttccgaa acatcatgtt gttagtttac aaccggttaa tgacaaggac
    16261 tttcaaattt ctgtagatca tttgagcatt ttgcaccggg atgtacaaga aattcggtat
    16321 gaagtatctg caaaaaaaat tcactttgcc agatttaaat catttccatt ttggcgtcgt
    16381 gtacacgatt cgtttattga agattaagct agcaggagga agcatgtgtt tttagaatgg
    16441 aaagtcgaaa cggaagaaga tggactctta cttcgcacgt ttttgaagag taaacatatt
    16501 tcgaaacaat tattaactgc cgtgaaattt ggggcagagg ggaaaattga agtaaataac
    16561 gaagaacaaa atgttttgta tcacgtaaaa gcaggcgata aagtgaggct tacttttcca
    16621 acagagcaac aaaatgaacg attgcttgcg gaatataccg atttagatat tatttttgaa
    16681 gatgattttt tattaattat caataaacca gctggtatgg cttctattcc atcacaatat
    16741 catccaaatg gatccgttgc aaattttgtc aaagggcatt atgaaacgca aggactgacg
    16801 aatgctattc atattgtaac aagactcgat cgtgagacgt ctgggttaat gttaatcgcc
    16861 aaaaatagat ttgctcatgc tagattaagt acgtttttgc aaaaaggatt actaaaacgg
    16921 cgctatcaag catttacatc aggagtttta gtagaacaaa agggttcgat tgaagcgcca
    16981 ataggacgca aagaagtgag tataatggaa cgttttgtta ctcctgaagg taaatatgcc
    17041 aaaacaaatt atgaggttct cgcgcgctat agagcatttg accatgtggc tattcaactt
    17101 gagacaggaa gaacacacca gattcgtgtg catttctctt atattggaca tccgcttatt
    17161 ggcgatgata tgtacggagg agatacgaat ttgttgaaaa gacaagcgct gcactcatgt
    17221 catctgcatt tagtccaccc tttgacagaa aaatatatgg cgtttgatct acctttacca
    17281 gcagatatgg aagagataat tcaaaaatcg aagtaataag agttttaaaa agttattttg
    17341 tcatgtaaaa tggaagaagc gaacaaatcg catcaatttt aggaggaaag aacatgaatt
    17401 tatcattaga gggaaaaaca tatgttgtaa tgggagtagc taataagcgt agtattgctt
    17461 gggcaattgc gcgttcacta aatgaagctg gagcgaaact tgtatttaca tatgcggacg
    17521 atcgtgcgaa aaaaagcatt acagaactag taccttcatt aagcgaagta aatcaaaatc
    17581 cacttatctt agcttgtgat gtaacaagtg aagaagctat tacagaaaca tttgaaacaa
    17641 ttaaagataa aactggcaaa cttagtggct tagcacattg tattgctttc gctaacaaag
    17701 actttttaac tggagattat ttagaagtag atcgtaaaag cttcttacag gcacatgaaa
    17761 ttagtgctta ctcattcaca gctgttgctc gtgcactaaa acacttagaa atgttgacag
    17821 aagatgcaag tttactaaca ttaacttacc ttggtgggga acgtgtagta gaaaactata
    17881 atattatggg tgtagcaaaa gcttctctgg atgcaagtgt tcgatacctt gctatggact
    17941 taggggcaat tggtgttcgt gtaaatgcta tttctgcagg accaatcaga acggtatctg
    18001 ctcgtggcgt tagcggtttc tctgattcta tttcactagt ggaagaaaga gccccactaa
    18061 aacgtgcgac acaagcggaa gaagttggcg atacagcata ttacttattc agtaatttat
    18121 ctcgaggcgt tacaggcgaa gtaattcatg tagatagcgg ttatcatatt attggatttt
    18181 aaagaaaaaa gaccgtaagt agttaaaaac tacttacggt ctttttttgg tccattttct
    18241 ggatgttctt taaagtaata ttcttttggt gttggtttat agtttgtttg cattggttct
    18301 ttaacgaagt ctgctaatac ttggtcgatt tttacccaac cgcgccagct taaatgaatc
    18361 ggatcttcta agaaaaaagc atcattttga tattcttcta gagagtagta acggaaacct
    18421 tgactctcaa tttgttcttt tgttttagca taatagtcat ctaaaccttg tttgtccata
    18481 ccaatgtaat caatccattt tccattgata ggcgggttaa tgaaaatgac atctgcacca
    18541 gcctttttga aagcatccat tagtagctgt aaatcagcaa actcaggaga ttggtcataa
    18601 cgtaaatctt tgcggctatt ttttaattta ccttcaattg gtttgatttt cttttggtaa
    18661 taatgttctt tgacttgaaa agggttatta ccagtacttc tctccccagt ttctttagcc
    18721 aattcatcta gtttttggta atctaaagtt tctggaagtt cttttaggcc tttgtttacg
    18781 cgatcttgtt tggaaccaat gatgtatttt gattctaaat catctttacg ttccaaaatc
    18841 ttcagttcga tattaccagt aatgtttaga agttttggat catgaggttt tttaggccct
    18901 tttgcgacaa tgttttcgag taattttttt aatgtagagt cactttgaac tacttgaaaa
    18961 gataataaac gtttagctgc atagcgacgt tcaggcgtat ttttcgtatc ttctaatgcg
    19021 aatttatatg catgaagagg ggaaaaattg gcaccaaatg atgggtcaga aacgccttta
    19081 ggttggaacc attgtggaga taaaactacc gctacttttt ttccttttaa atcatcacca
    19141 agtgcattta cgtctaagaa atgacttaat gattgtgtac ctgggcgacc aagtaaaaat
    19201 ggtgtatagc cctgattgta tttttttgag actacgctag gatgaaatgg gtcgacgcgg
    19261 gaaagctctg aagaaccata aattggtaaa tagtttcctt cttgtaaagc ttttttctgg
    19321 atgtctaagc cttggatgac ggattcgttc attgatgtag cgcttttctc tacggtttca
    19381 gaagaaactt tagagaataa gctactaggt ccgaatagaa cgaaaaggaa aaccacgaat
    19441 gcgaccagta aaggcccaaa tgtcatccac agcttttttt tcattatttt agcgcctcga
    19501 gttgtgtaat aatcatttca ggagtagccc attcgtcgcg gtcaaattcg gaaacaggta
    19561 cagtgatatc taatttttct tcaatttcaa ttaaaagttg aaccgtagcc atagaatcaa
    19621 gcaagccttc atcaaataat ttaatatttg tattttgtac tacttcatcc gtttctgtaa
    19681 tttcctctaa gatttctaat acattttcac
//
LOCUS       DABQVC010000030        19606 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.030,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000030 DABQVC010000000
VERSION     DABQVC010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 19606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19606
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.030"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..1201)
                     /locus_tag="IBJ56_000775"
     CDS             complement(<1..1201)
                     /locus_tag="IBJ56_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417039.1"
                     /translation="MKKQRVDYKRRLDQKRAQKAKLIAALITTTTMMVAPVTVNYDSF
                     NHQFALSGIQADAATIDLLGNSNLNTQYSNGKLVITLSGNQLVSASAVSTYYPYFELP
                     SELSSILSNPNIRANTKIDYKIAYLGIGGIGLFNQGTVNGSNSSNFFIDSSRNAVGAK
                     VNHLLGVGVGSISTFTLTIDLLALGVTALPSANDGKLDFAARTGDGLLDVDLLNSNAA
                     RGFITTDVGDADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADAD"
     gene            complement(1681..2577)
                     /locus_tag="IBJ56_000776"
     CDS             complement(1681..2577)
                     /locus_tag="IBJ56_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HAM3417040.1"
                     /translation="MKHWVKVTGAGVLSATLLLGGCGAQSEEKAEANVKTEQTVKPGS
                     QIKLEGAVNVRDLGGYKTTDGLTIKPHKLIRSAELANLSDSDKKKLVNTYDLSHIVDF
                     RTSSEVAAKPDPKLTDVDYTHDSVMKDNGASTSTQDLTASLAKMDNPETFLINANKSF
                     ITDETSIQAYKDFFDILLANQDGSVLWHCTAGKDRAGFGTALVLSALGVDKNTVINDY
                     MLSNKYRALENKKAIEAVAAKTDNKKVIDGMTAVMEVRESYINAAFDEIDAKYGSMDN
                     FLKEKLGLTDAKKEQLKKAYLY"
     gene            complement(2720..4072)
                     /gene="ffh"
                     /locus_tag="IBJ56_000777"
     CDS             complement(2720..4072)
                     /gene="ffh"
                     /locus_tag="IBJ56_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HAM3417041.1"
                     /translation="MAFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADV
                     NFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGTADRPPT
                     VIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPV
                     FSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEI
                     LLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIAT
                     GEKMEALETFHPDRMASRILGMGDVLSLIEKAQTDVDTEKMKAMEQKMKDNSMTLDDF
                     LEQLQQVKQMGPLDELLKMMPGANKMKGLDNMNVDDKQLGHIEAIIKSMTKNEKDNPD
                     IINASRRKRIARGSGRPVQEINRLLKQFGEMKKMMKQMTGGGKGKKGKNPFGNFKMPF
                     "
     gene            complement(4085..4417)
                     /locus_tag="IBJ56_000778"
     CDS             complement(4085..4417)
                     /locus_tag="IBJ56_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HAM3417042.1"
                     /translation="MFEKTNRMNLLFDFYQELLTTKQKAYVSFYYLDDYSLGEIAEEF
                     EVSRQAIYDNIKRTEESLEKYEEKQGMLKKYQQREKLFSQLEAQLTKKNFLDEQVKDT
                     LEQLKNID"
     gene            complement(4530..5516)
                     /gene="ftsY"
                     /locus_tag="IBJ56_000779"
     CDS             complement(4530..5516)
                     /gene="ftsY"
                     /locus_tag="IBJ56_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HAM3417043.1"
                     /translation="MTFFKKLKDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARY
                     RKVDEDFFEELEEILIGADVGFETVMELVDTLRREVQLRNISDPKDVQEVIVEKLVEI
                     YQGDEKEDEALHIEEDGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFR
                     AGAIDQLEVWGERTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKV
                     NLMNELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLD
                     GTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEYVYGLFADMVDNEK"
     gene            complement(5531..9091)
                     /gene="smc"
                     /locus_tag="IBJ56_000780"
     CDS             complement(5531..9091)
                     /gene="smc"
                     /locus_tag="IBJ56_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HAM3417044.1"
                     /translation="MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAI
                     RWVLGEQSAKSLRGGRMGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTR
                     RIYRNGDSEFLINKENCRLKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSI
                     FEEAAGVLKYKHRKKQAENKLFETEENLNRVQDILYELEGQLEPLEMQASIAKDYLFQ
                     QEELEKYEVTLLASEISSLTEKLAEVRKEFGENQTVLIKLREELHAEEAVISREKHAL
                     NETDIALDNLQERLLVETEKLEQLEGERNLQLERKKHSSENEQVYAETLAAITEKITA
                     LEEQKEVLSSSKLEKETALEIAVKAKKELEVTLAKYDDLSEEAIENRKSDYIDLRHTQ
                     TTINNDLGYIERQIGQITSRIDKLDLENSHHIDDRKDMLAQIETTKTHLTKIQSELTE
                     QMEIYREVQQTLAKQEAVFGTQERALYKHYETVQQMKSRKETLEELADDYAGFFQGVR
                     EVLKAKKEIPGILGALVELVEIPAKYQQAMETALGASAQNVVVEDDRVAREAISFLKK
                     TKSGRATFLPLSTIQPRELPAATKNALSNQPAFIALASEVISFDEKVSPVILNALGTT
                     ILAKDLKGANTLARLVNFRYRIVTLEGDVVNAGGSMTGGATKGGKSSILTRKHELGQL
                     AEKITELNEATREMESAVQLAKDSMAKKREELEETRGIGENLRLQEKELLGKLDRETE
                     NLERFNKQLQLYDIEKADGSEELNKLLERKETLLHEQVEIAKQIEATDEEIKAMTSSS
                     KALESKRAADLESLSSLKAQIAAKREQLQSATEAVERVTTTLHENYEQKEAAEQKLAS
                     LKTNLTSVHTSEESARKSIEELRKDKAETSEKLAQTRQTRAELQEKLELLEAELTQKN
                     NQISFYVEQKNNAEISIGRLEVDINNRIDRLQEAYLLTPEQAEEKILPEVNTEQARSK
                     VRLLKRSIDELGIVNIGAIEEFERIQERFDFLNRQQADLLAAKETLFKVMDEMDEEMK
                     IRFSESFEAIKTEFAIVFPELFGGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSL
                     RSGGERALTAIALLFAIIRVRPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV
                     ITHRKGTMEEADVLYGVTMQESGVSKLVSVRLEETAELIK"
     gene            complement(9114..9803)
                     /locus_tag="IBJ56_000781"
     CDS             complement(9114..9803)
                     /locus_tag="IBJ56_000781"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HAM3417045.1"
                     /translation="MNQWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNER
                     LEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG
                     KGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDY
                     KTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSA
                     AQFAINQLTHR"
     gene            complement(9998..10231)
                     /locus_tag="IBJ56_000782"
     CDS             complement(9998..10231)
                     /locus_tag="IBJ56_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAM3417046.1"
                     /translation="MAEVLEKVTKIIVDRLGVEESKVTLEASFKEDLGADSLDVVELV
                     MELEDEFGVEISDGDAENINTVGDAVKYIEANA"
     gene            complement(10338..11081)
                     /gene="fabG"
                     /locus_tag="IBJ56_000783"
     CDS             complement(10338..11081)
                     /gene="fabG"
                     /locus_tag="IBJ56_000783"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HAM3417047.1"
                     /translation="MTLQGKVAVVTGGSRGIGRDIAIKLAKEGANIFFNYNGSPEAAE
                     ETAKLVAEHGVEVEAMKANVAIAEDVDAFFKQAIERFGRVDILVNNAGITRDNLLMRM
                     KEDEWDDVININLKGTFLCTKAVSRTMMKQRAGKIINMASVVGLIGNAGQANYVASKA
                     GVIGLTKTTARELAPRGINVNAVAPGFITTDMTDKLDEKTKEAMLAQIPLGAYGTTED
                     IANAVLFLASDASKYITGQTLSVDGGMVM"
     gene            complement(11085..12026)
                     /gene="fabD"
                     /locus_tag="IBJ56_000784"
     CDS             complement(11085..12026)
                     /gene="fabD"
                     /locus_tag="IBJ56_000784"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HAM3417048.1"
                     /translation="MTKIAFVFPGQGAQKIGMGQDVAAEYPEAKKIYDDADERLGFSI
                     TEIITEGPIELLTKSENAQPALVSTSVAILRALETYGVKADYVAGHSLGEYSALVAGG
                     FLEASDAIYLVRKRGELMEAAVPNGAGAMAAVLGVDRETLKTITEEVTKEGDAVQLAN
                     LNCPGQIVISGTTAGVEKAGEKAKESGAKRVLPLAVSGPFHSSLMEPAALAFRDVLAE
                     VKISDGQIPVVNNVDAKETTDKSEISDKLIKQIYSPVLWEDIVEELIKNGVDTFVEIG
                     SGKVLAGLIKKINRDVTVLSAGDAESVKSVAATLKGE"
     gene            complement(12019..13032)
                     /gene="plsX"
                     /locus_tag="IBJ56_000785"
     CDS             complement(12019..13032)
                     /gene="plsX"
                     /locus_tag="IBJ56_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HAM3417049.1"
                     /translation="MKIAVDAMGGDHAPKEIVLGVMKAVAQYKDVEILLFGDETKINE
                     YLTDKTRVKIIHTDEKIESDDEPVRAVKRKKKASMVLAAQAVKDGEADACISAGNTGA
                     LMSTGLFVIGRIKGIDRPALAPTLPTVTGKGFVMLDLGANAEAKPEHLLQFGLMGSVY
                     AEKVRKIDRPRVALLNIGTEETKGNDLTKKSFELMKNQDAYEFIGNIEARDLLMDVAD
                     VVVTDGFTGNMVLKSIEGTGAAFLSMLKMSLLNGFKNKVAASFLKKDLMALKAKMDYS
                     EYGGACLFGVQAPVVKAHGSSNANGIFTTIRQVREMVEKQVVETIKAEVDKVKVGGTE
                     SND"
     gene            complement(13053..13622)
                     /gene="fapR"
                     /locus_tag="IBJ56_000786"
     CDS             complement(13053..13622)
                     /gene="fapR"
                     /locus_tag="IBJ56_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor FapR"
                     /protein_id="HAM3417050.1"
                     /translation="MKKYSKKDRQMKLQVAIEENPFITDEQLAEKFGVSVQTIRLDRV
                     ALSIPELRERIKHVASVNYADAVKSLPIDEVIGEIIDIQLSKSAISIFDVRSEHVFKR
                     NKIARGHHLFAQANSLATAVIPNEIALTTQATVRFVRSVNEGERIIAKAKVRPATDNR
                     AITIVDVKSYVGDEIVLKGKFEMYHATQK"
     gene            complement(13804..15852)
                     /gene="recG"
                     /locus_tag="IBJ56_000787"
     CDS             complement(13804..15852)
                     /gene="recG"
                     /locus_tag="IBJ56_000787"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HAM3417051.1"
                     /translation="MSELKRIPTTEIKGIGEETAKTLKELGLSTVHDLLWNFPYRYED
                     YRLRDLSEVAHEERITIQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQPYL
                     KSKISVGETVTISGKWDKSRAQVTASKIKIGAVESEEELEGVYRLKGTLRNKTMQKYT
                     RLAFDSYSQDIEEVIPSNLLEKYQLMDRLEAVRILHFPKNNEELKQARRRMVYEEFLL
                     FQLKMQFFRKIEREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHF
                     HMNRLLQGDVGSGKTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDI
                     TVGLLTSSVKGKQRRELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGV
                     AQRRVLREKGEYPDVLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQ
                     MLDRVIGFMEKEIDKGHQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMH
                     GKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLR
                     GRVGRGADQSYCILIADPKTEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQS
                     GVPEFKVADMVHDYRVLEIARQDAVHMIFEEDMLENKNYEKLVALLEEEGVFTEQKLD
                     "
     gene            complement(15845..16735)
                     /gene="sdaAA"
                     /locus_tag="IBJ56_000788"
     CDS             complement(15845..16735)
                     /gene="sdaAA"
                     /locus_tag="IBJ56_000788"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HAM3417052.1"
                     /translation="MFRTVAELVDIAERENLTIAEIMIKREMNISGLPREEITAAMER
                     NLDIMEEAIREGEAGVTSTTGLTGGDAVLMQDYIKKGNFLSGEVLLDSVAKAIATNEV
                     NASMGVICATPTAGSAGVVPGVLFSLKDRLEMSREDMVNFLFTAGAFGYVVANNAFIS
                     GAAGGCQAEIGSASAMASAAIVAAAGGTPEQSAHAMAMTMKNMLGLVCDPVAGLVEVP
                     CVKRNALGSSQAIISADMALAGIKSRIPCDEVIEAMHRVGLQMPSSLRETAEGGLAAT
                     PTGRAIQRKIFGLSPEDKRE"
     gene            complement(16871..17533)
                     /gene="sdaAB"
                     /locus_tag="IBJ56_000789"
     CDS             complement(16871..17533)
                     /gene="sdaAB"
                     /locus_tag="IBJ56_000789"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit beta"
                     /protein_id="HAM3417053.1"
                     /translation="MKFNSVFDIIGPVMIGPSSSHTAGASRIGAIARAVFNEQPSQVD
                     IHLYGSFAKTYKGHGTDVALIGGLLGFEPDDPRMKESPKLAEEWGMRIQFIEEVEEPP
                     HPNTVKLVLKHGMQQMTLIGASIGGGKVEIIRLNEFELEFTGTAPAILILHQDKFGAI
                     AAVSSVIADHKINIGQMKVSRKVKGDEALMVIEVDQQVEQALISKIAELPGIYQVASV
                     MI"
     gene            complement(17573..19231)
                     /locus_tag="IBJ56_000790"
     CDS             complement(17573..19231)
                     /locus_tag="IBJ56_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HAM3417054.1"
                     /translation="MSIYQLDSEKFAAMIALGAENLAKNADFVDSLNVFPVPDGDTGT
                     NMNLSMTSGAEEVAKNDKETISAVGANLAKGLLMGARGNSGVILSQLFRGFSKAIENK
                     ETLNAEEFAGAFVKGVETAYKAVMKPVEGTILTVAREAAKAGVAAASEHQDIELVMEA
                     ILKQGKVALEKTPDLLPVLKEVGVVDSGGQGLIIIYEGFYGALTGKMAEAPDYMASMG
                     ELINAEHHRHVQDFMSTEDIHFGYCTEIIVKINENKPGQKPFDEEQFRQDLSKLGDSL
                     LVAADDEVVKVHVHVEHPGEVLNYGQQYGSLLKMKVENMREQHTEIVGDDKVPAKEKA
                     AYGIVTVSAGEGLKKLFESMGVSVVLSGGQTMNPSTEDIVKAIESANAEQVFVLPNNK
                     NIQMAAEQAAQILGDDKVQIIPTKTIPQGLTAVLSFQADQDFLANAEAMKAAIEDVAS
                     GQVTTAVRDTTVEGVEIKKDSFIGMVEGKIKVSCATLEEAAYETLEKLLDDDSEIITI
                     IVGEDADTSKAETLADKVTEAFPDVEVEIHEGDQPVYPYIFAVE"
     gene            complement(19246..>19606)
                     /locus_tag="IBJ56_000791"
     CDS             complement(19246..>19606)
                     /locus_tag="IBJ56_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HAM3417055.1"
                     /translation="IEIDTKLGKIDITSDVIATIAGGAAEENFGIVGMASRHQIRDGL
                     TDILRRENYTKGVIVRQEEEGIHIDMYIIVSFGTKISEVAHNVQERVKYTLEKTLGIT
                     VESVNIYVQGVRVIKES"
BASE COUNT         5029 a         4382 c         3484 g         6711 t
ORIGIN      
        1 catccgcatc cgcatcagca tcagcgtcgg catcggcgtc agcatccgca tccgcatcag
       61 catcagcgtc agcatcagcg tcggcatcag catcagcgtc agcatcagcg tcggcgtcgg
      121 catcagcgtc agcatcagcg tcggcgtcgg catcagcgtc ggcatcagcg tcagcatccg
      181 catccgcatc ggcgtcggcg tcggcatcag cgtcggcatc agcatcagcg tcagcatcgg
      241 cgtcagcgtc ggcatcggcg tcagcatcag catccgcatc agcgtcagca tcagcgtcgg
      301 catcagcatc agcgtcggca tcagcatcgg cgtcagcatc agcgtcggca tcagcatcag
      361 cgtcagcatc agcgtcagca tcagcgtcgg cgtcggcatc agcatccgca tcagcgtcag
      421 catcagcgtc ggcgtcggca tcagcgtcag catccgcatc cgcatcggcg tcggcatccg
      481 catcagcgtc agcatcggcg tcagcgtcag cgtcggcatc cccaacatcc gtagtaataa
      541 acccacgagc cgcattacta ttcaacagat caacatccaa aagcccatca ccagttctag
      601 cagcaaaatc taattttcca tcattggcac taggtagcgc agttacgcca agcgctagca
      661 aatcaattgt caaagtgaaa gtagatatac taccaactcc aactcccagt aagtgattta
      721 cttttgcacc aaccgcattt ctactagaat caataaagaa attgcttgag ttacttccat
      781 ttactgtacc ttgattaaat aatccaatac cgccaattcc taaataagca attttataat
      841 caattttcgt atttgctctt atatttggat tactcaaaat agaagaaagt tcacttggta
      901 gttcaaagta tggatagtac gtggatactg cactagcact aactaactga ttcccagaaa
      961 gagtaatcac taatttccca ttagaatact gtgtattcaa attagaattt cctaataaat
     1021 caattgttgc cgcatccgct tgaataccac ttagggcaaa ttggtgatta aaagaatcgt
     1081 aattcacagt gacaggcgct accatcatcg ttgttgtcgt aataagcgcc gcaattaatt
     1141 ttgctttttg cgctcgcttt tggtctaatc tccgtttgta atctacacgc tgttttttca
     1201 tcatttttcc cccttaaaaa tcaatcgttc ttgattttga aaaataactg aaaacagaat
     1261 aaaggtatta aattatgttt tcctaataag ctaactatta agtatcccct gaacctttat
     1321 ccaatatcag attccaacca tttcagccca atgtccctcc cttcgttttc ggacctaaca
     1381 ttagctgtta taacccgtta gataacttta ctatatagta tatttttaaa aattaaagta
     1441 aaaagtacta gaaccaaaaa atacttcaat tcgattcttt tagtctaaaa gttatacaaa
     1501 tatacgtatt tatagcctgt atttaaactt tagcactgtt cctaataggg tattaagacc
     1561 tatagcagtt aacattacac gaattgtctt tcaattgtat acaaatcttt ttaaaatggt
     1621 tcttcacttc agattctatt tgtacgcaaa aaaaaagccc tttttcaagg gcttactttt
     1681 ttaataaaga taggcttttt ttagttgttc ttttttagca tcggttagtc cgagtttttc
     1741 ttttaaaaag ttgtccatcg aaccatattt tgcatcaatt tcatcaaagg ctgcattgat
     1801 ataagattca cgaacttcca ttacggctgt cattccatca atcacttttt tattatctgt
     1861 ttttgctgca acggcttcaa ttgctttttt attttcgagg gcacgatatt tattggaaag
     1921 catataatcg ttaatgactg tgtttttatc cactcctaat gctgacagaa cgagggcggt
     1981 tccaaatcca gcacgatctt ttccagctgt acagtgccaa agaacagatc catcttggtt
     2041 tgctaatagt atatcaaaaa aatctttata ggcttgtatc gaagtttcat ctgtaataaa
     2101 gctcttattg gcattaatga gaaatgtttc tggattatcc attttggcta ggctggcagt
     2161 taaatcttgt gtgcttgtag atgcaccatt atctttcatc acagaatcgt gcgtatagtc
     2221 aacatctgtg agttttgggt ctggtttggc tgcgacttct gaacttgttc ggaaatcaac
     2281 tatatgagac aaatcgtatg tatttacgag tttcttttta tccgaatcac ttaagttagc
     2341 gagttcggca cttctaatga gtttatgtgg cttgatagtt agtccatccg ttgttttgta
     2401 tccgcctaag tcccggacat ttacagcacc ttctaattta atttggcttc ctggtttgac
     2461 tgtttgctcg gttttaacgt ttgcctccgc tttttcttct gactgcgctc cacatcctcc
     2521 taatagtaaa gtcgcgctta gcacccctgc ccctgttact tttacccaat gtttcattct
     2581 ttctcctcct tttgtaagct tcttgtacat tatagcaacg caatttgttg gttgaatgaa
     2641 gggtttgtaa agaaatgatt ttagggatgt taaggtatga aaaaaagcca aaacccggaa
     2701 tgggttttga cttttagaat taaaatggca ttttgaaatt gccgaatgga tttttgcctt
     2761 ttttgccttt gccgccacca gtcatttgct tcatcatttt tttcatttca ccaaattgtt
     2821 ttaggagacg gttaatttct tgaaccggac gtccgctacc acgtgcaatc cgttttcttc
     2881 tacttgcatt gatgatatct ggattgtctt tttcattttt ggtcattgac ttgataattg
     2941 cttcaatatg acctagttgt ttatcatcga cgttcatgtt gtcgaggcct ttcattttgt
     3001 ttgcccctgg catcatttta agtagttcat ctagtggtcc catttgtttt acttgttgta
     3061 actgttctaa gaagtcatct agcgtcatgc tgttgtcttt cattttttgt tccatagctt
     3121 tcattttttc tgtatctaca tcggtttgcg ctttttcaat cagggaaagc acatcgccca
     3181 tgccgagaat tctggaagcc atacgatctg gatggaaagt ttctagagct tccatttttt
     3241 caccagtcgc gataaattta attggtttgc cagtgacgga acgaatcgaa agcgctgcac
     3301 caccacgtgt atcaccgtct aatttggtta gcacgacacc tgtaatttct aattgttcgt
     3361 tgaagctttg cgccacgttg acagcatctt gcccagtcat ggaatcgaca acaagcagga
     3421 tttcggttgg cgttgcaatt tctttcactt gttttaactc atccattagc gtttcgtcaa
     3481 tatgaagacg acccgctgta tcgataataa cataatctaa atgttcttct tttgctttag
     3541 caatagcttg tttggcgatt tctaccgggc ttacttggtc tcctagagaa aataccggca
     3601 tatctaattg cttgccaagt gtttctaatt gtttgattgc ggcaggtcgg taaatatctg
     3661 ctgcgacaag taatggttta cggttatatt ttttgcgtaa taaattagca agtttgccgg
     3721 aagtcgttgt tttaccagcc ccttgtaaac ctaccatcat aatcacggtt ggtgggcggt
     3781 ccgctgttcc gattttgctt tcttctccgc ccattaagct tgttagttct tcttgaacga
     3841 ttttgataac ttgttggccg ggtgttaggc ttttcataac gtccgcgccg acagcacgtt
     3901 cgcttactgt tttaataaat tgtttaacga ctttaaagtt aacatcggct tcaagtagag
     3961 caagacgaac ttcacgcatc atttctttta cgtcagcttc gtttactttc cctttgccgc
     4021 gaattttgtt cattgtttct tggagtcttc cagctagtcc ttcaaatgcc atgattctgg
     4081 cctcctaatc gatattttta agctgttcga gcgtatcttt cacttgctcg tccagaaaat
     4141 tcttcttggt taattgtgct tctaattgac taaaaagttt ttctcgttgt tggtattttt
     4201 ttagcatccc ttgtttttct tcgtattttt ctaggctttc ttcggttctt ttaatattat
     4261 cataaatggc ttgtctactc acttcaaatt cttcagcaat ttcgcctagc gagtaatcat
     4321 ctagataata aaaagaaaca taggcttttt gttttgttgt tagtaattcc tggtaaaaat
     4381 caaataataa attcatacgg tttgtcttct caaacaaggc atttcacctc tctcctttta
     4441 aaggatacgg ggaaatcgcg ggaatgtcaa ggaaggttaa acaaaagaga aaaaagccag
     4501 aatgacgaga atcattcggc tttctctgat tatttttcgt tatcaaccat atcagcaaat
     4561 aagccataca catattcatt tgcatcaaag gcttgtaggt cgtccatttg ttccccaaga
     4621 ccgacgaatt tcactggaat atctagttca ttgcgaatgg cgataacaat accacccttg
     4681 gcagttccgt ccagttttgt gaggataatg cctgttacgt cggttgtttc tttaaattgt
     4741 tttgcttgaa cgaaagcatt ttggccagtt gtagcatcaa gtactagtaa aacttcgtgc
     4801 ggcgcattag gaatttcacg cgtaatgaca cgttttactt tttctaattc gttcattaga
     4861 ttgactttgt tttgtaaacg gccagctgta tcgcaaagta aaacgtccgc tttgcgtgct
     4921 tttgctgctt gaacggcatc aaacatcacc gctgcagggt cgcttccctc ggcttgttta
     4981 ataacatcga cgccggtacg ctcgccccag acttctaatt gatcaatggc accagcacgg
     5041 aatgtatcgc cagcagctaa catcactttt ttaccttctt gtttaaagcg atgagccatt
     5101 tttccgatgg aggttgtttt accaacccca ttcacaccaa caaacaagat aacggttagc
     5161 ccgtcttctt cgatatgaag tgcttcgtct tctttttcgt ctccttggta aatctcgact
     5221 aatttttcga ctatcacttc ttgtacgtct tttggatcac tgatgtttct aagttgaact
     5281 tcacggcgta gcgtatcgac tagttccatg acagtttcaa aaccaacgtc tgctccgata
     5341 aggatttctt ctagttcttc aaagaaatct tcgtcgactt tacgatagcg agcaaccatt
     5401 tcgttaattt ttccggaaaa gttgccgcgt gttttggata agccatcttt aaattttcca
     5461 gaaacagaat cagtttgctg agttatttta tcttttaatt ttttaaaaaa ggtcattttg
     5521 tttactcctt ttatttaatg agttcagctg tttcttctaa acgaactgat actagtttgg
     5581 agacgccgga ctcttgcatg gtgacgccgt ataatacgtc ggcttcttcc attgttcctt
     5641 tacgatgtgt gataacgatg aactgcgtgc cggactcgaa ttgctttaag taacggctga
     5701 atcgtgtaac attggcttca tctaaagccg cctctacttc atccaaaata cagaatggta
     5761 ctgggcgaac gcgaatgata gcaaataata atgcaatcgc cgttagcgca cgttctccgc
     5821 cagaacgaag cgataggttt tgtaattttt tcccaggtgg ttgaacgacg atatcaatcc
     5881 cggttgttag aagattttct ggatcaagga gcaccagttc cgcgctacct ccaccaaata
     5941 gctcagggaa aacaatcgca aattcggttt taattgcttc aaaactttca ctaaaacgaa
     6001 ttttcatttc ttcgtccatt tcgtccatga ctttaaaaag ggtttctttt gcggcaagta
     6061 agtccgcttg ttgcctgttt aggaagtcaa aacgttcttg gatacgctca aattcttcga
     6121 tggcaccaat attgacgata cctaattcat cgatagaacg ttttaataaa cgaactttcg
     6181 aacgagcttg ttcggtattt acttctggca agattttttc ttcggcttgc tctggtgtta
     6241 gtaagtaagc ttcttgcaaa cgatcaattc ggttattaat atctacttct aaacgaccga
     6301 tgcttatttc tgcattattt ttttgctcca cgtaaaaact gatttgatta tttttttgtg
     6361 ttaattcggc ttctaatagt tctaattttt cttgtagttc agcacgagtt tgtcttgttt
     6421 gcgcaagttt ttcgcttgtt tcagccttat ctttgcgcag ttcttcaatg gattttctag
     6481 ctgattcttc gcttgtatga acgctagtta agttggtttt taaggaagct agtttttgtt
     6541 cagccgcttc tttttgttcg taattttcat gtagcgttgt cgttactcgc tcgacggctt
     6601 ctgtagcaga ttgaagttgc tctcgtttag cggcgatttg cgcttttaag gatgacagac
     6661 tttctaaatc tgctgcacgt ttgctttcta gtgctttgct tgaacttgtc atcgctttga
     6721 tttcttcatc ggttgcttcg atttgttttg cgatttcgac ttgttcatgt agtaaagttt
     6781 cttttcgctc cagtagtttg tttaattctt cgctaccgtc tgctttttca atatcgtata
     6841 gttgtagttg tttattgaag cgctctagat tctcagtttc tcggtctagt tttccaagta
     6901 attctttttc ttgtaaacgt aaattttcac cgattcctcg tgtttcttcg agttcttcac
     6961 gttttttcgc catgctatct ttagctagtt gaaccgcaga ttccatttca cgagtggctt
     7021 cgtttaactc ggtaattttc tctgctaatt ggcctaactc atgttttctc gttaaaatag
     7081 acgattttcc gcctttggtt gctccaccag tcatcgaacc accggcattc acgacgtcac
     7141 cttctagtgt cacaatgcga tacctaaagt tgactaagcg agcgagcgta ttcgcccctt
     7201 ttaaatcttt cgccaaaatc gttgtcccta gagcattcaa aataaccgga gaaacttttt
     7261 catcaaaaga aatgacttca cttgcaagtg cgataaaagc aggttggttg cttaaagcgt
     7321 ttttcgttgc agctggaagt tcgcgaggtt gaatagtcga aagtggtaag aaagttgcgc
     7381 ggccactttt cgttttcttc aagaaactga tggcttcacg agcaacgcgg tcatcttcta
     7441 cgacaacgtt ctgcgcactt gccccaagcg ctgtttccat ggcttgttgg tacttcgcgg
     7501 gtatttctac gagttctact aacgcaccta aaatccctgg aatttctttt ttcgctttta
     7561 agacttcccg gacaccttgg aaaaagccag cataatcatc cgccaactcc tctaatgttt
     7621 ccttccgcga tttcatttgt tgcactgttt cataatgttt ataaagcgca cgttcttgcg
     7681 ttccaaaaac agcttcttgt ttcgctaaag tttgctgtac ttcacggtaa atttccattt
     7741 gttccgtaag ctcactttgg atttttgtta aatgtgtttt ggttgtttct atttgagcga
     7801 gcatatcttt tctatcatcg atatgatggc tattttctaa atctaacttg tcaattcgac
     7861 tcgtgatctg accgatttgg cgctcaatat aacctaaatc attattaatt gtcgtttgcg
     7921 tgtggcgcag atcaatataa tcacttttgc ggttttcgat tgcttcttcg gataaatcat
     7981 cgtatttggc aagtgttact tctagctctt ttttcgcttt gaccgcaatt tcaagtgctg
     8041 tttctttttc gagttttgag ctacttagaa cttctttttg ctcttccaag gcagtaattt
     8101 tttccgtaat tgccgccagt gtttctgcgt aaacttgttc attttcgcta ctgtgctttt
     8161 tacgttctaa ttggagattt cgctctcctt ctagttgttc cagtttttcc gtttcaacta
     8221 aaagacgttc ttgtaaatta tcaagcgcaa tatctgtttc attcagtgca tgtttttcgc
     8281 gtgaaataac cgcttcttcg gcatgtaatt cttcgcgtag cttaattaaa accgtttgat
     8341 tttcaccaaa ttctttacga acttcggcta gtttttctgt taaggaactg atttcgctcg
     8401 cgagtaaagt cacttcgtat ttttctagtt cttcttgttg gaataaataa tctttcgcaa
     8461 tagaagcttg catttcaagc ggctccagtt gtccttctaa ttcgtataaa atatcttgta
     8521 ctcggtttaa attttcttcg gtttcaaata atttattttc tgcttgtttt ttacggtgtt
     8581 tatattttaa tacgccggct gcttcttcaa aaatcgagcg acgttcttct ggtttactgt
     8641 tcagaatttc atcgattttc ccttgcgaaa taatcgaaaa agactctctt ccaagtccag
     8701 agtccataaa taaatcgaca atatctttca gtcgacaatt ttctttatta attaaaaact
     8761 cgctatcacc attacggtaa atacgtctag taacagctac ttcgctataa tcaagtggta
     8821 aaaaatggtc ttcattttcg aggataagtg acacttccgc aaaattaatt ggtttccgtg
     8881 tatcacttcc agcaaaaata acatcaccca ttcggccacc acggagcgat ttagcggact
     8941 gctcaccaag tacccagcgg attgcttctg taatattact tttcccgctg ccatttggcc
     9001 ctacaactgc agtcatgccg ggcacgaaat ctatcgcaac tttgtcagca aaggatttaa
     9061 agccattcat ttctaatcgt tttaataaca tgtccggaca cctccatttt tgtttatctg
     9121 tgtgttagtt ggtttatagc aaattgtgcc gcactttgtt ctgcttgttt ttttgttctg
     9181 ccgctgcctt ttccgagtac ttgtccgtta acaattactt gggcatcgaa tgctttattg
     9241 tgcgctggtc ctgtttcgcc aaggatatca tattcgatca agacatcacg gtcccgttga
     9301 acaatttctt gcagttgcgt tttataatcc actgtttgta gatatgcccc tgcatcaatt
     9361 tttggaaaaa taacacgttc taaaaatgtc acaactttgt caatcccatt atctaaataa
     9421 agcgcgccga taaaagattc aaatacatcc gccagaagtg ccggacgagt tcttccaccg
     9481 gctttttctt cccctttacc aagtcgtacg tatttagaaa aatgtactgc ttctgcaaac
     9541 tcgactaaag aaggctcaca aacaattgct gcgcgcattt ttgtcatgtg tccttctgcc
     9601 atatctggat atttgttaaa tagataattc gatacagtga gttcaaggac tgcatcacca
     9661 agaaattcta agcgttcatt atctttcaca ttttcccggc ggtgttcgtt cacatatgag
     9721 gaatgtgtga atgcttgttt taataattca acatctttaa aatcgaatcc aacgctttct
     9781 tgtaactctt cccattgatt catttcactt gctcctctct ttaataagca agttcatttt
     9841 ctaaacagcc actagcaaaa agctgcttag aaaatgaacc aacaaaatct cgtgaccttg
     9901 aaaaagaggc cacctgcgct acttgtctcg cgtgcggaag ttaccacagc aaagataagt
     9961 aacacgggca ccctcattta tccggtcaca taaagtttta tgcgttcgcc tctatgtact
    10021 tcactgcatc accaactgtg ttaatgtttt cagcgtcgcc atcagagatt tcaactccga
    10081 actcgtcttc aagttccatt actaattcaa caacatctag agaatctgca cctagatctt
    10141 ctttgaagga agcttctaaa gttactttgg attcctcgac acctaaacgg tcgacgatga
    10201 tttttgtaac tttttctaat acttctgcca tttttcactt cacctccctc caagtattat
    10261 ataggattat ttctcctacg taaacaaaaa tatttaaagt aatgcgagcc aattaaattc
    10321 gcattcatta accaatttta catcaccatt ccgccatcaa cagatagtgt ttgaccagta
    10381 atatacttcg aagcatcgct cgctaggaaa agaactgcat ttgcaatatc ttccgttgtt
    10441 ccataagcac caagcggaat ttgcgctaac attgcttctt ttgttttttc atctaatttg
    10501 tcggtcatat ctgttgtaat gaaaccagga gcaacagcat ttacgttaat accacggggc
    10561 gcaagttctc gagcagttgt ttttgttaaa ccgataacgc ccgctttact tgctacgtaa
    10621 tttgcttgac ctgcattacc aatcaaacca acaacagatg ccatgttgat aattttacct
    10681 gcgcgttgtt tcatcattgt acggcttact gcttttgtac aaaggaaagt tccttttagg
    10741 ttgatattaa ttacgtcatc ccattcgtct tctttcatac gcattaataa gttatcacgt
    10801 gtaattcccg cattattcac aagaatgtcc acacgaccaa agcgttcgat tgcttgtttg
    10861 aaaaaggcat ctacatcttc agcaatggct acgtttgctt tcattgcttc tacttcaaca
    10921 ccatgttcag caacgagttt tgctgtttct tctgcagctt ctgggctacc attgtaattg
    10981 aagaaaatat ttgcgccttc tttggctaat ttaatggcaa tgtcacgtcc aattccgcgt
    11041 gatccacctg ttactactgc tacttttcct tgtaaagtca ttaattattc tcctttcaat
    11101 gtcgctgcaa cgcttttcac tgattcagcg tcacctgctg acagtacagt tacatcacga
    11161 ttaatttttt taattaaacc tgctaagact tttccagaac caatttcgac aaacgtatct
    11221 acgccgtttt taattaattc ttcgacgata tcttcccata atactggaga atagatttgc
    11281 ttgattagtt tatcgctaat ttcggattta tccgtagttt ctttagcgtc cacgttatta
    11341 accactggaa tctgaccatc tgaaatttta acctctgcta aaacatcacg gaaagcaagt
    11401 gcggctggtt ccattaagct agagtggaaa ggtccgctaa cagcaagtgg taatacgcgt
    11461 tttgcgccac tttcttttgc tttttcgcct gctttttcaa cgccagctgt tgttccagaa
    11521 ataacgattt gtcctgggca gttaaggtta gcaagttgta ctgcatcgcc ttctttagtt
    11581 acttcttcgg tgattgtttt taatgtttcc cggtctacac caagaactgc agccattgcg
    11641 ccagcaccat ttggtacagc tgcttccatt aattcaccgc gcttacgtac aaggtaaatc
    11701 gcatcacttg cttctaaaaa tccgccagca acaagcgcac tatattcacc aaggctatgt
    11761 cccgctacgt aatcagcttt cacaccatat gtttctaaag cgcgtaaaat agcaacactt
    11821 gtggaaacta aagctggttg tgcgttttcg gatttcgtta ataattcaat tggaccttct
    11881 gtaataattt ctgtgattga aaacccgagt ctttcgtcag catcatcata gatttttttt
    11941 gcttcaggat attctgctgc tacatcttgt cccatgccaa ttttttgtgc tccttgaccg
    12001 ggaaatacaa atgcaatttt agtcattaga ttctgttcct cctactttta ctttgtctac
    12061 ttctgcttta attgtttcga ccacttgttt ttcaaccatt tcacgtactt gacggattgt
    12121 ggtgaaaata ccattcgcat tggatgaacc gtgggctttt acaactggag cttgaacacc
    12181 gaacaaacaa gcaccgccat attcgctata atccattttt gcttttaaag ccattaaatc
    12241 ttttttcaag aagcttgctg caactttatt tttaaagcca ttaagcaaac tcatttttag
    12301 catacttagg aaagcggcgc ctgttccttc gatggactta agtaccatat taccagtaaa
    12361 tccgtcggtt acaacaacat ctgctacatc cattaataaa tcacgcgctt cgatgttgcc
    12421 gataaattcg taagcgtctt gatttttcat aagttcgaat gatttttttg ttaaatcatt
    12481 tccttttgtt tcttctgttc caatgtttaa aagcgctacg cgaggacgat caattttacg
    12541 cactttttct gcgtaaaccg agcccattaa accaaattgt aataaatgtt ctggttttgc
    12601 ttccgcattt gctcctaaat caagcataac aaagcctttt cctgtcacgg ttggtagtgt
    12661 tggtgcaagt gctggacggt caatcccttt aatacggcca ataacaaaca atccagtaga
    12721 cattaaagcc cctgtgtttc cagctgaaat acaagcatct gcttctccgt cttttaccgc
    12781 ttgggcagca agtaccatag aagctttttt cttccgtttt acagcgcgaa ctggttcgtc
    12841 atcactttca attttttcat cggtatgtat aatttttacg cgggttttat cagttaaata
    12901 ttcatttatt tttgtttcat ctccaaaaag aagaatttca acatctttat attgggccac
    12961 agctttcatc acacctaaaa caatttcttt tggtgcatga tctccaccca tcgcatctac
    13021 agcaattttc attatacgtc agtcctttat tttcattttt gcgttgcgtg atacatttca
    13081 aatttgcctt taagtacaat ttcatctcca acatagcttt tcacgtctac gattgtaata
    13141 gctctgttgt ctgttgccgg acgtactttt gcttttgcga tgatgcgttc tccttcgttt
    13201 acagaacgaa caaagcgaac ggttgcttgt gttgttagag ctatttcatt tgggatgacg
    13261 gcggttgcta aggaattagc ttgggcaaac aaatgatgcc cacgagcgat tttatttcgt
    13321 ttaaaaacat gctcactacg cacatcaaaa atcgaaatag cgctcttgct aagttgaata
    13381 tcaataattt caccaatcac ttcatcgatg ggaaggcttt ttactgcatc ggcataattg
    13441 acactcgcaa catgtttgat tcgctctctg agttcgggga tggaaagtgc tactctatct
    13501 agacgaatag tttgcacact gaccccaaat ttttctgcaa gctgctcatc tgttatgaaa
    13561 ggattttctt caatcgcaac ttgaagtttc atttgacgat cctttttaga atattttttc
    13621 atgcacgtat cctcatctct ttttttgtga aaggtattaa taccagctac taaacagtag
    13681 gtaaaaaaag gaagttacct ctgtcggata acattcagaa cttcctttgt atttattggt
    13741 actttaatat gttattaaaa atcaagccaa gttgcaagtt tttttaaaga ttgttacata
    13801 ggtttaatct agtttttgct ccgtgaagac gccttcttcc tccagaagtg ctactaattt
    13861 ttcgtagttt ttgttctcta acatatcttc ttcaaagatc atgtgaacgg catcttggcg
    13921 ggcgatctcc agtacccggt aatcgtgaac catatctgct actttgaatt ctggaacacc
    13981 actttgtttt ctgccgaaga aatctcctgg gccacgaagt tctaggtcgc gttcgctgac
    14041 aacgaagcca tcgtttgttt ctgacataat catcatacgt tctttgccga cttcggtttt
    14101 tgggtcagca attaaaatac agtaagactg atctgctccg cgcccaactc ggccccgaag
    14161 ttgatgcaac tgcgctaaac caaaacggtc ggcatcgtaa atgaccatca tggtagcgtt
    14221 tggcacgttt acaccaactt ccactactgt ggtcgaaaca aggcaatcaa tttttttatt
    14281 attaaagtcg cgcataattt gctctttatc tgctggtaat agtttaccgt gcattagacc
    14341 tggaatatat ttagtgcccc atttattttg tagaatgttg aaaacgtcta tcgcattttg
    14401 cacatctagt ttttcagatt cttcaattag cggacaaatg atgtagactt ggtggccttt
    14461 gtcgatttct ttttccataa aaccgataac gcgatcaagc atttgatgtt ttacccagta
    14521 agtttcaatt tcttttcgac cagctgggag ttcatcgata atcgatacat ccatttcgcc
    14581 aaatgctgta atggcaagcg ttctaggaat tggggttgcg gtcataaata aaacatccgg
    14641 atattcccct ttttcacgaa gaacacgacg ctgcgctacg ccaaatcgat gttgctcgtc
    14701 agtaataact aaacctaggc gatgataaat tacttcgtct tgaattaatg catgcgttcc
    14761 gattaaaaca tcaatggagc cattttcaag cattgctagt aattctctgc gctgtttgcc
    14821 tttcacacta ctcgttagta agccaactgt aatatcaaaa ggttgcaaca gctctactaa
    14881 ggaattcgca tgttgctcgg ctaaaatttc ggttggcacc atgagtgcgc tttggaagcc
    14941 acttttggca gctgcataca tggcaataga tgctacaact gttttacccg atcccacgtc
    15001 tccttgtagc aaacgattca tatgaaagtg tgataacata tcaccgcaaa tttcattgac
    15061 tactcgtttt tgtgcttttg ttagtggaaa tggcaaggaa tcaatgtaat ggcgcaaatc
    15121 ttctacatcg taattaatcg aaattccacc tgatttctcg cgttcaattt tacggaaaaa
    15181 ctgcattttc aattggaata acaagaattc ttcgtagacc attcggcgcc tagcttgttt
    15241 caattcctca ttatttttag gaaaatgcag aatgcgcact gcttctaggc gatccattaa
    15301 ttgatacttt tctaataaat tgcttggaat aacttcttct atatcttgac tataactatc
    15361 aaaagcaagt ctcgtatatt tttgcattgt tttattacgt agcgttcctt ttagacggta
    15421 aacgccttct agttcttctt cactttcgac agcgcctatt tttattttgc tggctgtaac
    15481 ttgggcgcgg ctcttatccc atttgccaga gattgtcact gtttcgccaa cacttatttt
    15541 actttttaaa tagggttggt tgaaaaaatc gattttgatg acttgccctt cagttgagac
    15601 gcggaaagag agcttggatt ttttgcgacc gtagaaagca acggttgcct ctgttaggac
    15661 ttcgccttga atggtaatcc gttcttcatg cgccacttct gataaatccc gcaaccgata
    15721 atcctcatag cgatacggga agttccaaag caaatcatgc acggtggata aacctaactc
    15781 ttttaacgtt ttcgctgttt cttcgccaat tcctttgatt tcagttgtcg ggattcgttt
    15841 aagttcactc acgcttatct tctggcgaca gtccaaaaat cttccgctga attgcacgtc
    15901 cagtcggtgt agccgccaat cctccttctg ccgtttctct taaagagctt ggcatttgta
    15961 agcctacgcg gtgcattgct tcaattactt catcacatgg aatgcggctc ttaatacctg
    16021 cgagcgccat atctgctgaa ataattgctt gcgaggaacc aagggcatta cgtttaacac
    16081 atggaacttc tacaagccct gctacaggat cacacacaag tccaagcata tttttcattg
    16141 tcatagccat cgcgtgtgct gattgttctg gcgtcccacc ggctgctgct acaatcgccg
    16201 ccgaagccat cgcacttgct gagccaattt ctgcctgaca gccaccagcc gctccactta
    16261 taaaagcatt attcgcaaca acatacccaa aggcacctgc tgtgaataaa aagttcacca
    16321 tatcctcacg cgacatttct agacgatctt ttaaggaaaa aagtacgccc ggcacaaccc
    16381 ccgcgcttcc tgccgttggt gttgcgcaaa taacgcccat cgaagcatta acttcattcg
    16441 tcgcaattgc ttttgctaca gaatcaagta acacttcgcc tgataagaag tttccttttt
    16501 tgatatagtc ttgcattagg acggcatctc cgcctgttaa gccagttgta gaagtaactc
    16561 ccgcctcacc ttcacgaata gcttcttcca taatatctaa attccgttcc atcgcagctg
    16621 ttatttcttc ccgcggtaaa ccagaaatat tcatttcacg cttgatcata atttcagcaa
    16681 tagttaggtt ctcgcgttca gcgatatcta ctaattctgc tacagttcta aacattgtcc
    16741 acactcactt tctttaccct ttaccaacat acctgattta caactcaaaa taaagccaaa
    16801 tgcacgtttt gtttacgcac atttggcttt acacaaatcg agcgaaagcc accgatttac
    16861 tagaaaacta ctaaatcatg acacttgcta cttgataaat ccctggtaat tcagcaattt
    16921 tgctaattaa agcttgttca acttgttggt ctacttcaat gaccattaac gcttcatcgc
    16981 cttttacttt acgggacact ttcatttgtc cgatattgat tttatggtcg gcaatcacgg
    17041 aagatactgc agcaatcgcg ccaaatttgt cttgatgtaa aataaggata gctggagcag
    17101 ttccagtaaa ttctagttca aattcgttta agcgaataat ctctactttt ccgccaccaa
    17161 tggatgcacc aattaatgtc atttgttgca taccatgttt taatactagc tttaccgtat
    17221 ttggatgagg tggctcttct acttcttcga taaactgaat gcgcatgccc cactcttcag
    17281 caagcttcgg agattctttc atgcgcggat catctggctc aaagccgagc aatccgccaa
    17341 tcaaagctac atcagtacca tgacctttat aggttttggc aaaagaacca tataaatgaa
    17401 tatctacttg ggatggttgt tcattaaaaa cagctcgtgc aatggcacca atacgactag
    17461 cgccggcagt atgagaactt gacggaccaa tcattacagg accaataata tcaaatacgc
    17521 tattaaattt cactaaaatc atcctttctt ctattcattt acagaggcgt ctttattcta
    17581 cagcaaaaat atacggataa actggttggt cgccttcgtg aatttctact tcgacatcag
    17641 ggaatgcttc tgttacttta tcagcaagcg tttctgcttt tgaagtatct gcatcttcac
    17701 caacaatgat agtaatgatt tcgctatcat catcaagtag tttttccagt gtttcgtaag
    17761 cggcttcttc taatgttgca caactaactt tgattttgcc ttcaaccata ccgatgaagc
    17821 tgtctttttt gatttcgaca ccttctactg ttgtatcacg tacagctgtc gttacttggc
    17881 cacttgctac gtcttcaatt gctgctttca ttgcttctgc attagctagg aaatcttgat
    17941 ctgcttggaa tgaaagaacg gcagtaagtc cttgtggaat tgtttttgta gggatgattt
    18001 gaactttatc atctcctaga atttgtgccg cttgttccgc agccatttgg atatttttat
    18061 tatttggaag aacaaaaact tgttctgcat ttgctgattc aattgctttt acgatatctt
    18121 ctgtacttgg attcattgtt tgaccacctg aaagaacaac agacactccc atgctctcaa
    18181 atagtttctt caatccttct ccagctgaaa cagtaacaat accataagcc gctttttctt
    18241 ttgctggcac tttgtcatca ccaacaatct cagtatgctg ttcgcgcata ttttccactt
    18301 tcattttaag tagactaccg tattgctgac cgtagtttag tacttcacca ggatgttcca
    18361 catggacatg tacttttact acttcatcgt ccgcagctac tagtagagaa tcccccagtt
    18421 tacttaaatc ttgacggaac tgttcttcgt caaaaggttt ttgaccgggt ttgttttcgt
    18481 tgattttcac gataatttcg gtacagtaac caaaatgaat atcttccgtt gacataaagt
    18541 cttgcacatg acgatgatgt tcggcattaa ttagctcacc catagatgcc atatagtcag
    18601 gagcttcagc cattttgcca gttagtgcgc cataaaatcc ttcataaata atgataagac
    18661 cttgtccacc actatcgaca acaccaactt cttttaaaac tggaagtaaa tctggtgttt
    18721 tttctaatgc gactttccct tgttttaaaa ttgcttccat tactaattcg atatcttgat
    18781 gttcacttgc tgctgcaact ccggcttttg cggcttcacg agctacggtt aggatggttc
    18841 cttcgactgg cttcatgaca gctttgtagg cagtttccac gcctttaacg aaagcaccag
    18901 caaattcttc cgcgtttaac gtttctttat tttcaatcgc tttagaaaat cctcggaaaa
    18961 gttgggataa aataacacca gagttccctc gggcacccat tagtaagcct ttagccaagt
    19021 ttgctccaac ggcactaatt gtttctttgt catttttcgc aacttcttct gctccacttg
    19081 tcatcgatag attcatattc gttcccgtgt caccatctgg aaccgggaag acattcaatg
    19141 aatctacaaa atcagcattt tttgctaaat tctctgctcc aagcgctatc attgctgcaa
    19201 atttctctga gtctaactga tatatactca cttacataat cctccttaag attccttgat
    19261 tactcggaca ccttgaacat aaatattcac tgattccact gtaataccga gtgttttttc
    19321 tagtgtgtat ttgacgcgtt cttgaacatt atgcgcaact tcggaaattt ttgttccaaa
    19381 gctaacaatg atatacatgt caatatgaat accttcttct tcttgtctaa ctataacacc
    19441 tttagtataa ttttctcttc ttaaaatatc tgtcaaacca tcacgaattt ggtgtctact
    19501 tgccattcca acgatgccaa aattttcttc ggcagctcca ccagcgattg ttgcaataac
    19561 atcactagta atgtcaattt tgcctagctt tgtgtcgatt tcaatt
//
LOCUS       DABQVC010000031        19370 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.031,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000031 DABQVC010000000
VERSION     DABQVC010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 19370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19370
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.031"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            49..591
                     /locus_tag="IBJ56_000792"
     CDS             49..591
                     /locus_tag="IBJ56_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HAM3417056.1"
                     /translation="MKLTEKQKRFADEYIKCGNATEAARLAGYSSKTANRIATENLSK
                     PVIKGYIDKILSELEEKRVMGYTEAMQLFTEIARGEMEEEVIVSNSDGFSVVTKSADI
                     NQRVSALKEIVKRHVAGGRDKLQEELIQAQIDKLRADTKQESNQGTTTIIMSNVDEMQ
                     AYLDKKAGGTDERDDTQTTN"
     gene            560..1891
                     /locus_tag="IBJ56_000793"
     CDS             560..1891
                     /locus_tag="IBJ56_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HAM3417057.1"
                     /translation="MNATIHKQLIDYQVINVTDMINPAFYDLWLSKHNHIIAKGGRSS
                     MKSSVISLKLVEKKMANPKSNMVCLRKVANTLYKSVYQQIKWALYEMGVADQFNFGKS
                     PMEIVHKTWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWFEELAEFSGVTDIDVVEDTF
                     IREDLPDGQEVTTYMSFNPPRNPYEWVNEYVDTKRGDDDYLIHHTTYLDDEKGFLSKQ
                     IIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAIPADDRLILIDFAIDT
                     GHQVSATTYLSFGLTAKRNVILLNTYYYSPANQVVKKAPSEYSKELRDFMTKVVGNYN
                     TNVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGKKVDMIDFVCDLLAQGRFYYLDIPE
                     NQIFIEEHRKYQWDVKTINTDKPEVIKEDDHTCDAFQYYVKDNLRKLGLKF"
     gene            1904..3403
                     /locus_tag="IBJ56_000794"
     CDS             1904..3403
                     /locus_tag="IBJ56_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015967141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HAM3417058.1"
                     /translation="MINQIIASVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMW
                     KRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKINIDDKAA
                     EEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGKKNVKVSFATADCMYPLSND
                     SENVDECVISNSFHKNDKYYTLLEWLEWKGEKVEVYTVTTELYQSDDPNELGTKVSLA
                     LLFDDIEPVAPLSKFTRPTFTYIKPNIANNKNLTSPLGISIYANALDTLKTLDLMFDS
                     YYQEFKLGKKKVLVPSSFVKTAVNLDGSTTNYFDSTDEAFFLYQGDQDADGKSVKDIS
                     VEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHS
                     QLIEQGIKEMIVSILEVGKFIEAYSGDIVELDTITVDFDDSIAQDEDTTINRYTNAKN
                     QGMIPLKIALQRAWNITEAEADEWAEMLAKEKQAEMPNNDMTGIFGEEE"
     gene            3409..4548
                     /locus_tag="IBJ56_000795"
     CDS             3409..4548
                     /locus_tag="IBJ56_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HAM3417059.1"
                     /translation="MALTPRQLDLFVQPVVDVYTTLENELFTLIVRRLKTKKNISADN
                     VLAWQIEKLNQVHALDQQMIERISKASGVSAKKLFSIVKDAGYSDLTQVDNYFSKLAE
                     TGAVLPLVSDGQTIVDKVMRSYFKLAQSNYNRVNQTMLSQARQIYSDIIHETTQSVLA
                     GLKTHRQALAETVTKFAENGVPALVDKANKRWTPEAYVRTVTRTTVNSVYNSVEDERM
                     NEYGVDLVRISQHVGARPTCSIVQGKVICLLSVEETKTKYGNKYMSIYSPELRYGYGD
                     GIFGCNCRHHRFAFVEGINIAPGENELIDEEENKRVYMLSQQQRLMERDIRAAKRKLS
                     AAEELGDELTVKKAKQAVRTKQSKLRAFVKTHNLTRQYSREKVYA"
     gene            4627..5217
                     /locus_tag="IBJ56_000796"
     CDS             4627..5217
                     /locus_tag="IBJ56_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="scaffolding protein"
                     /protein_id="HAM3417060.1"
                     /translation="MERDFLKELGLEKETIDSIMVEHGKSIQNEKDKVTSAEAERDGL
                     KSQLAQRDDDIEALKTDSGTSKSLKAQLETLQDNYETLKKDSEAKLVETRKGAALDLA
                     LANAKARNPKAVKALLDNDKLELTDEGLKGLDEQLGALQESDAYLFAQESEAVPKFGF
                     SGNPTAPAGFSGSLKENLKSDSFNLTKFLTEKGESE"
     gene            5217..6218
                     /locus_tag="IBJ56_000797"
     CDS             5217..6218
                     /locus_tag="IBJ56_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coat protein"
                     /protein_id="HAM3417061.1"
                     /translation="MGNEITKLLDVVTPEVFNAYMDNFTSEKSAIIQSGIAVADPSVA
                     QNITAGGLLVNMPFWNDLDGEDETLGDGEKGLETGKITASADIAAVMYRGRGWSVNEL
                     AAVISGDDPLDALMGKIASWWMRREQTVLISVLNGLFAKNGALASSHLLSKPTSAISG
                     NLVLDAKQLLGDSSDRLSLMVMHSAVYTALQKQNLIAFIPNARGEVNIPTYLGYRVVV
                     DDGVPSTGTGAAKVYTSYLFATGSIGRNTGNPAKLTTFETARDASKGNDQVFTRRAFT
                     MHPYGVKFKNAVRDANEITPTNADLAKAGNWEKVYEDKQIGIVGIQHLVEELPASGA"
     gene            6237..6632
                     /locus_tag="IBJ56_000798"
     CDS             6237..6632
                     /locus_tag="IBJ56_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417062.1"
                     /translation="MPYTTLEFYTNEYAGEHLEQDEFDKLLKHAERKIDSVTFYRIRK
                     SGIESFSEFIQHQIQLATCNQIEYFKEAGGTSELAVSKPDNVSIGRTSISDSNFASTA
                     TSLNSGLIGSDVRSYLAHTGLLYNGVGVR"
     gene            6632..6994
                     /locus_tag="IBJ56_000799"
     CDS             6632..6994
                     /locus_tag="IBJ56_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HAM3417063.1"
                     /translation="MKVVKPITNAPPLPLDWLIHNISYEAYKEEDRHNQVVYEKGIEI
                     EHVRVDFSKSNQIAGLSDSDRYDAVIFIDAVNSMNVPADFISRSRIFFSGKAYKIVKV
                     IPCYATSENVHHWEIEVV"
     gene            6994..7332
                     /locus_tag="IBJ56_000800"
     CDS             6994..7332
                     /locus_tag="IBJ56_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HAM3417064.1"
                     /translation="MPIKVNIDLSKAKKNVKKAKEGAQFALINQAAADISLYVPFLEG
                     DLSNQYVIMNDKEIMWTSIYARRLYNGINFNFTLTHHPLAGPEWDQRAKVDKLESWIE
                     VAQKSVEEGL"
     gene            7332..7739
                     /locus_tag="IBJ56_000801"
     CDS             7332..7739
                     /locus_tag="IBJ56_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HAM3417065.1"
                     /translation="MSLDFLDSVMDAIENNVDLKDMKLRTAILKPESIALLLTPNNDK
                     QGYQDGSYERSFSFNLNGSSKQEMKVLGVLNAIAAYFDKTEIESIQSLNNSFVLEDKE
                     TTSVPNLVSASDDGTFIYSASFKIKLYIESEEK"
     gene            7742..8179
                     /locus_tag="IBJ56_000802"
     CDS             7742..8179
                     /locus_tag="IBJ56_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAM3417066.1"
                     /translation="MARIKNAKTKYFVAEIVDGAGEPVWKRLSKWITNVSDDGSDNTE
                     EQGDYDGDGNEKTVVLGYSEAYTFEGTHDREDEAQNLIVAKRRTPENRGIMFKIEIPD
                     TETAIGKATVSEIKGSAGGGDATEFPAFACRIAYDETPKVTKP"
     gene            8109..8441
                     /locus_tag="IBJ56_000803"
     CDS             8109..8441
                     /locus_tag="IBJ56_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig domain-containing protein"
                     /protein_id="HAM3417067.1"
                     /translation="MLRSSQRSLAVSLMTKHQKLQNPEESPSSVEVDKATITLKVGET
                     STITASVLPVGASQEVTFTSSNPPKAKVNASGVVEGVAEGTANITVASKGSPSINKVV
                     QVTVEAAD"
     gene            8494..8916
                     /locus_tag="IBJ56_000804"
     CDS             8494..8916
                     /locus_tag="IBJ56_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417068.1"
                     /translation="MTQNNVINIQLEESYQEFQLGTELFRVGLGDEMRRKWIEADEKY
                     KKKLEKLNKYNIDNTDEMSSEEYFTLEEDVKEALTEAYAILLDDEKAFDKCYAQCKDI
                     LKMYQVYNQVAEIIVGSVEKQQNEIQKKYKAKMTKKAK"
     gene            8922..9527
                     /locus_tag="IBJ56_000805"
     CDS             8922..9527
                     /locus_tag="IBJ56_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417069.1"
                     /translation="MLSLAFGVNDIYEYEGKEYKLDLAFDNVLRVIDLTEDNSLSNVF
                     RANLAIDVLFADDMPWPRSNEEDKYANIEEKSLVLIDIFTNYIVKENDDGLLYDIDGN
                     KMPSATNNNDEAEEIASYSLTQDADYIYASFLQDYNIDLLDSRGKMHWYKFRALLESL
                     RDDTTIKTIIGIRQAELPSGKGTEKERNELIKLKNRYKLKD"
     gene            9538..14904
                     /locus_tag="IBJ56_000806"
     CDS             9538..14904
                     /locus_tag="IBJ56_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HAM3417070.1"
                     /translation="MSDGSVVIEISLDDKKADKQLDAFEKDLEKAGTNAGAALDKAYR
                     EAVSDIASQSKRLKDTFVNAFKSMGSAGSNALKASLNFMRELPSNVQAALSKLASTVK
                     TGFVNAAKASITVIKELGTSIKNTAVNIKNGFFSIAKTVQSSIVSAVKVSINVIKSIP
                     SAIKSAGISIKSALVSSLQAAKSAAISFAQTTVKVIKSIPVAAKTAATAVKNSFVVAY
                     KAVVVAAYMSVKGTISAVKAIPSATKSAALAVSSAMKTAFSAVASAAKTTGTTVKSAL
                     KTGFSAVKSGAKAAGQAGISALKGLGNIAKSTGSLIKSGLVSGFNAAKAAAKGAGAGM
                     REALKNSVEKPAEQARFSVLKLAAALGLIAATKNVVGSAIGRVDTIDTATKSLTVLTG
                     SAKDAQLVMTDLTAAIDGTPIALDAVALGAKKMVAAGMKAANVKPVFTAIADAAYGVG
                     NGSESIDQMTDAISALQASGVAYADDINRLVDAGVPAWQILANSTGKSVGEMKKYVSE
                     GSLESTKAIAMLTKGIEEGTTGMAGNTAKMAGLAKTAGNTISGSFANMKTAAVKSLAN
                     IAENLKGPIIQALDVAKNAFKQFAAVTASPEFQKKLSDLIQKIKEFIPVLIEWAPLLA
                     KVAAGFVTFNIISSVFSKVAKLAGAIKSLTSSGSLLSVVVNTIKGSFVKLAGTLGSTT
                     AAFGVVAAAVGAVIAVIYGMYTAFKENTAGIKSFLSGMWEAVKNSFGKIIDVFKQIVS
                     ALKPVGSGFKDILKYIGVGAWIVLGFALAAVVDIIQVLARIVLVAIKALQGLYYAIKA
                     AFQALQGDLKGAKKSLEKSKDAFVDAGSAIKDAFNKDNYALTGTVEAFKQMGGEAEKT
                     AKKTETSGKKIKDTLKLVESTAKQTETTVSKSNQAIDTMLSGGVDQYGNKLSEKTKSF
                     LNSAKELYSQYQESAKKSQDAYTAAMEKAQTLEGDKRKKAIADANTALVSEINKNNGT
                     LLTLQADYAKLLKGNKWVDGTELTAQQKKFLQQQTADIQAELAKQNQLYVEGNLLKLA
                     NGKTLNEKERSTSIEVQKSLYADRKKAVETGEKELADLKKKKADASTETEKANYQIQI
                     DEQTKKNKTLAGNLQKWASEMNAIIANGGTLNAETFAKGLSEMGNISDEQLSAVWQDF
                     VKVSGSIDNTLAGLGAIMSQRGGEGVQAFVTALQSGDYTTAALNINNDVMNTLSTLPN
                     GMFQNGQSGKDQFIAAIKSGDFQGAGKFLLDGVKLGASPLPGEMNNIGKQGGNANADG
                     LKSTAEANKSAGAELKNNAKNGAFDPNLFKMTGANNASGFNGGILDGKGNAFSAGTGI
                     GNSAKSGAASVDSSGVGSDFASGYAQGIASGGVMVAGAASALANKALAAVQKKQDSHS
                     PSKESKKLGGDFGTGYSLGIADKNKAVTKAANNLVASALGTESQIKKLSSTLKDKISS
                     AIDAGLHSKNKSAGQLKQAKALNSIEGYIGQQTNKLAATAKKRDKVVAQLKAANTKMA
                     DLTKQSKEYAASITEKMQSYGSISNVDPENPQSIQQEMQKRLKEIKAFQANVEKLRKK
                     GVSKDIISDILESGVENGSSYAQALAKSDAKTIKAINSTQNQINSASKSMGNTAANAM
                     YSAGINAAKGLINGLNSQKKQLENTAKSIANTITNSVKKALRIHSPSRVAVELGKFFT
                     GGLGNGVLAGAKGAVQSTNKMVDKVVNAASNMTVPAITLPKISAEKALGLKSVDLNRT
                     ITVKTIIDNKTKESSNADLIKAIQQSGDRPIIFNVDGKNLAENANNRIGTMGNLGLYG
                     GGLL"
     gene            14901..15728
                     /locus_tag="IBJ56_000807"
     CDS             14901..15728
                     /locus_tag="IBJ56_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012582412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HAM3417071.1"
                     /translation="MNKKTDLYLMQANKIIKLNEKHNFEISEVSRASPQIINNYTSYE
                     FSDGNRSSDSNFDSFDIEFTCRFTTNGNVDYHVRLDELFEDIFIRKEYYIFHTKTPGK
                     KYCVHPGAFDVERKAAGHAQFTLTFEVFKGFSESLGTSLSPFAFSEGIWQAGQGVVSQ
                     NYKYKHTSNRFSIYNAGSFDIDPRMHDLRITIKNCRSDGLLTINNKSTGEKFVFNEKI
                     YAYDTIELDGSNILKNGIRCGRKTNLGLISLLSGENEIEIENVSNIETTWDFPFLYK"
     gene            15743..16765
                     /locus_tag="IBJ56_000808"
     CDS             15743..16765
                     /locus_tag="IBJ56_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012582413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417072.1"
                     /translation="MDIFVSDYEKQYKEILTDFDPASFAETWVENQQWQLDFYVEKTK
                     NNQDAFDLLKHESSVYLDGQEFIVKQFTEGSVGKIVYSDIMATHIYFTMQDNHQYNTI
                     SGSKSAKDCLTHIFSADKQGFSFELIDKNKILENITQENFGDGNLLKLVQEVLDDYKL
                     VMLADNKRLTFIPVEDYGEHTENEIRYNKHTNEVKFDIDTLSLKTQIRGFGKVDSNGN
                     NYFPPVTYTSPEAEKWGVRIQEPLRDERYTTASSILRRLELELQDYPSTTGNVSLKLK
                     YECGKGDYVMFVYEPLGLLYEVQIVAYKKYIFTNKPPELTLSNNKKTMVSIMVQLAKA
                     IKKGAK"
     gene            16766..17791
                     /locus_tag="IBJ56_000809"
     CDS             16766..17791
                     /locus_tag="IBJ56_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417073.1"
                     /translation="MDLKKWQDPLMNSELQQDYNDNLVKLAGSLEKANQDMTHVNQRI
                     SNLVIKSGGNESNEVVDARVSSLVPETEFTTLNDRINYAENALVSGIGKLSTNVYDLM
                     DKYNDIDTILKRLYGLDSSNIEIFVDDARGDDIAGTGEIDAPFKTINKAVMTLPRVLN
                     SNSVNIWIVPGRYNEDVVIPPIMGGDIYIRSTNFETVDPTSSTGCQVRSISATGSNGY
                     LYIAGLEETNTAGTTKNYFIKAIRCGFVRISKCRMAFNTKAIDPFTAVFIDACSADVN
                     GCYFASQNVDVRGYNTARVEVQNIIHGAKSAIGLYPQSADIFNLNSGTWEADTPTKLS
                     GGGVVRT"
     gene            17788..18855
                     /locus_tag="IBJ56_000810"
     CDS             17788..18855
                     /locus_tag="IBJ56_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HAM3417074.1"
                     /translation="MTENVIHKNGVYDFNVTTQEDKPLQKSVFYTQDSGGTARLIFNI
                     DKDNQDLVLSSAAELELAMILAKGKESESKYLVKPTIIDGVRGIAEYSLTDSQIAHDG
                     NAIAELYIKYKNSQAMRVYKFEFEIKKALIDSDFFPVAEFYVERWDDYEKIFDESFER
                     LNAKLDDVDKKADDLKTQFDAMQPTQFAQKTDLNAHVNNADIHVTATDKTSWNAKETT
                     ASAQAKADKALADAKAFFELSSEVQSVNLTPKNGFIATQPLVARYVKFGTRFLVLIGG
                     IVGKGTGTGIGVCASVPSLLAPDTAWNKLFSASQQSSSANNRANVYISSGGDISVVAA
                     GDVTVNTGLDCVIYFTKEVTT"
     gene            18852..19193
                     /locus_tag="IBJ56_000811"
     CDS             18852..19193
                     /locus_tag="IBJ56_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417075.1"
                     /translation="MSELIKVFKYDDNGVFERDDLIILKKGEKIPDGYTLIEPPVPAI
                     NPVFNTKKQKWSSGEEASIPEPPELTELEKLTQDYADLMLYVAEVEQKTEQTQQDNAN
                     LLLSLAEAGVL"
     gene            19194..19340
                     /locus_tag="IBJ56_000812"
     CDS             19194..19340
                     /locus_tag="IBJ56_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XkdX family protein"
                     /protein_id="HAM3417076.1"
                     /translation="MINWYEKVKDYFLGGYYTEADVNKFVALKKITRSQADEIIAMKE
                     AKAE"
BASE COUNT         6842 a         3263 c         4244 g         5021 t
ORIGIN      
        1 tgatggtcct ttttatttta tcaaaataag ggagtgtggt gatatgtagt gaaactaacc
       61 gaaaaacaaa aacgatttgc ggatgaatat ataaaatgcg gtaatgctac agaagccgct
      121 cgtctagctg gttatagttc gaaaacggct aatcgtatag caacggaaaa cttgtcaaaa
      181 ccagttatta aaggctatat agataagatt ttaagtgaac tcgaagaaaa gcgagtgatg
      241 ggttatacag aggctatgca attattcacc gaaatagctc gaggcgaaat ggaagaagaa
      301 gtaatagttt cgaatagtga tggcttttcc gtcgttacaa agagtgctga catcaatcaa
      361 cgagtatcag cactaaaaga gattgttaag cgtcatgtag caggtggtag agataaatta
      421 caagaagagc ttattcaagc gcaaatcgat aagttaagag cagatacgaa gcaagaaagc
      481 aatcaaggaa caacaacaat tatcatgtcg aacgttgacg aaatgcaagc ctaccttgat
      541 aaaaaggcag gtggcaccga tgaacgcgac gatacacaaa caactaattg attaccaggt
      601 tatcaatgta acagatatga ttaatcccgc tttttatgac ttgtggctat ctaaacataa
      661 tcacatcata gcaaaaggcg gacgttcttc tatgaagtcg tctgttatta gtttgaagct
      721 cgtagaaaag aaaatggcta atccgaaatc taacatggtg tgcctacgta aagtagctaa
      781 tacgctttat aagtcagtct atcagcagat taaatgggcg ctttatgaaa tgggtgttgc
      841 tgaccaattc aattttggta aatctccaat ggaaatcgtt cataaaactt gggggacagg
      901 cttctacttc tctggttgtg atgatcccgc taaactaaaa tcaatgaaaa ttccagtcgg
      961 ttatgttagc gatttgtggt ttgaggaatt agcggagttc tctggcgtga ctgatattga
     1021 tgttgtagaa gacacattca ttcgtgaaga tttgccggat ggtcaagaag ttacaacata
     1081 catgtcattt aacccgcctc gcaatcctta cgaatgggtg aatgaatatg tagacactaa
     1141 acgtggtgac gatgattatt taatacatca cactacttat ttggatgatg aaaaaggctt
     1201 tttatccaag caaatcatta agaaaattga gaagtacaaa aagaatgacc tcgattatta
     1261 ccgctggatg tatctaggag aggtaattgg tcttggtgat aatgtttata acatgaacct
     1321 gtttcagccg cttaaagcta ttcctgcgga tgacaggctt attttaattg atttcgctat
     1381 tgatacagga catcaagtgt cagctacaac atatctaagt ttcggtctca ctgcaaaaag
     1441 aaatgttatt ttgctaaaca catactatta tagtcctgct aatcaagttg ttaaaaaagc
     1501 gcctagcgag tattcaaagg agttgcggga ttttatgact aaagtagttg gaaactacaa
     1561 tacaaatgtt gatatgcaaa cagtagatag cgcagaggga gggcttcgca atcaatatta
     1621 taaagattat ggcgttagct tacaccccgt cgcaaaaggt aaaaaagtgg atatgattga
     1681 ctttgtgtgt gatttgttgg cacaaggtcg tttttattat cttgatattc cagaaaatca
     1741 aatattcatc gaggaacata gaaagtatca atgggatgtt aaaacaatca acacagacaa
     1801 gcccgaagtc atcaaagaag atgatcatac gtgtgatgct tttcagtact atgtaaaaga
     1861 caatctaagg aagttaggtc tcaaattcta ggaggtgaaa accttgatta atcaaataat
     1921 cgcaagcgtg aaaggagtga tgcggagaat gggactattg aaagcactga aagatgtaaa
     1981 agaccataaa aaagtaaatg ctaatgatga agattataag tatattgaca tgtggaaacg
     2041 gctatatcaa ggccattacg ctgaatggca taatctaaat tacgaacaca atggcaatcc
     2101 ggttaacaga cgtcaattat ctatgaattt gccgaaagtt acagctaagt acatgtctaa
     2161 acttcttttt aatgagaaag tgaaaatcaa tattgatgat aaagccgctg aggaattcgt
     2221 gcttaatgta ttgaaaacga acggttttac taaaaatatg gagcgttaca tcgaatacgg
     2281 cgaagcgatg ggcggttttg taataaaagt gtatcacgac ggaaaaaaga acgtcaaagt
     2341 ttcattcgcg acagccgatt gtatgtatcc tttgtcaaat gatagcgaga atgtagacga
     2401 atgtgttata tctaatagtt ttcataaaaa cgataaatat tatacgttgc tcgaatggct
     2461 cgaatggaaa ggggagaaag tagaagtata cacagtcaca acggagttat accaatcaga
     2521 cgacccgaac gagcttggta caaaagtaag tttagcgtta ctgtttgatg atattgagcc
     2581 tgttgcgcca ttgtcaaagt ttacacgtcc gacatttact tatatcaaac ctaacattgc
     2641 gaataacaag aatctaacga gcccgctcgg catttccatt tatgctaatg cattagacac
     2701 attaaaaacg cttgatttga tgttcgattc atactatcaa gagtttaaac ttggcaaaaa
     2761 gaaagtattg gtgccttcga gcttcgttaa aacggctgtt aacctagacg gctcaaccac
     2821 gaattatttc gattcaactg atgaagcatt ctttttatat caaggtgacc aggatgcaga
     2881 tggtaaatca gtaaaagata tatctgtaga gattcgttca acggagttta tcgagtctat
     2941 aaacgcaatg ctacgcattt atgcgatgca agttggatta tctgctggca cattcacttt
     3001 cgatgaaaac ggcttaaaaa cagctacaga agttgtaagc gagaagtcag aaacctatca
     3061 aactaaaaac agtcattcgc aattaattga acaaggcata aaagaaatga ttgtgagcat
     3121 tcttgaggtc gggaaattta tcgaagctta tagcggcgat atagttgagt tagacacgat
     3181 tacagtcgat tttgacgact ctatagcgca agacgaagat acaactatca atcgttacac
     3241 aaacgctaaa aatcaaggta tgattccgct aaaaattgct ttacaacgtg cttggaatat
     3301 tactgaagct gaggctgatg agtgggctga aatgttagcg aaggaaaaac aagcggaaat
     3361 gcctaacaac gatatgactg ggatattcgg cgaagaggag tgatatagat ggcactaact
     3421 ccaagacaac tcgacttgtt tgtgcaacct gttgttgatg tttacacaac gctcgaaaat
     3481 gaattgttca ctcttattgt tcgccgattg aaaacaaaga aaaatatcag cgcagataat
     3541 gtgcttgctt ggcaaataga aaaacttaat caagttcatg cactagatca gcaaatgatt
     3601 gaacgaattt ccaaagcttc cggcgtttca gctaagaagc ttttttctat tgttaaagat
     3661 gcgggataca gcgatttaac acaagtagat aactatttca gtaaattagc tgaaacaggc
     3721 gctgtgttgc cactagtaag cgatgggcaa acgatagtcg ataaagtaat gagaagttat
     3781 tttaagttag cacaaagcaa ctataatcgc gtcaatcaaa cgatgttatc gcaagcaaga
     3841 caaatctatt cagatatcat tcacgaaacg acacagagcg tcttagctgg tttaaaaaca
     3901 catagacaag cattagcgga aacagtaact aaattcgctg aaaatggcgt tcctgcgctt
     3961 gtagataagg ctaataaaag atggacacca gaggcttacg tccgaaccgt tacaagaaca
     4021 accgtcaaca gcgtttataa cagcgttgaa gatgagcgaa tgaatgaata tggcgttgat
     4081 ttagtgcgta tttcgcaaca tgtaggagct agaccaacgt gttcaattgt tcaaggcaaa
     4141 gtcatctgtt tgttatctgt tgaagaaaca aaaacgaaat acggcaataa atacatgtct
     4201 atttactcgc cagagcttag atatggttat ggagatggga ttttcggttg taattgccgt
     4261 caccatcgtt ttgctttcgt tgaaggcatt aacattgcac caggcgagaa cgagttaata
     4321 gacgaagaag aaaacaaacg cgtttatatg ttgagtcagc aacaacgatt gatggaacgc
     4381 gacataagag cagctaaacg caagctgtca gctgccgaag aattaggcga tgaactaaca
     4441 gttaaaaagg ctaaacaagc tgttagaacg aagcaaagca agctaagagc atttgtaaaa
     4501 acgcacaatt taacaagaca gtatagcaga gaaaaagtat atgcctaaca ttcgacctga
     4561 acgaaagtcg ttaaaagtcg gctctcgtga tcgtatcacg taaaaacaac gtaggaggaa
     4621 taagaaatgg aaagagactt tttgaaggaa ttaggcttgg aaaaggaaac tatcgactct
     4681 attatggtcg aacatggtaa gtcgattcag aacgaaaagg acaaggtaac atcagcggaa
     4741 gcagaaagag acgggcttaa aagccagctt gcgcaacggg acgatgatat cgaagcttta
     4801 aaaactgatt ccggaacgag caaatcttta aaagctcaat tggaaacact gcaagacaat
     4861 tacgaaactt tgaaaaaaga ttcggaagct aaattagtag aaactcgcaa aggtgcagca
     4921 cttgatttag ctttagcaaa tgcgaaagca agaaatccga aggctgtaaa agctttactg
     4981 gataacgaca aactagaact gacagatgaa ggactgaaag gccttgacga acagctagga
     5041 gcattgcaag aaagcgatgc ttatttgttt gctcaagaaa gcgaggcggt tccgaaattt
     5101 ggattcagtg gcaatccaac agctccggct ggtttcagcg gttcgttgaa ggaaaattta
     5161 aaatcagatt catttaattt aacaaaattt ttaacggaaa aaggagagag tgaataatgg
     5221 gaaatgaaat cacaaaatta ttagacgtag taacaccaga ggtttttaat gcgtacatgg
     5281 ataacttcac atctgaaaaa tcagcaatta tccaatcggg aattgcagtg gctgatccaa
     5341 gcgttgcgca aaatattaca gcgggcgggt tacttgttaa tatgccgttt tggaacgatt
     5401 tagacggcga agacgaaact ttaggtgacg gtgaaaaagg gctagaaaca ggtaaaatta
     5461 ctgctagcgc tgacattgct gcggtaatgt atcgtgggcg cggatggtca gtcaacgaac
     5521 ttgcggcggt tatttcggga gacgaccctt tagacgcttt aatggggaaa atcgcttctt
     5581 ggtggatgcg tcgtgagcaa actgtactaa tttccgtgtt aaatggactg tttgctaaaa
     5641 acggtgcatt ggcaagttcc cacttgctat caaaaccaac atctgcaatt tcggggaatt
     5701 tagtattaga tgcaaaacag cttcttggag attcttcgga tcgtttaagc ttaatggtta
     5761 tgcattcagc ggtttataca gccttgcaaa aacaaaactt aattgcattt attccaaatg
     5821 ctcgtgggga agtcaatatc ccaacttatt taggatatcg tgtagttgta gacgacggag
     5881 tgccttccac aggaacagga gcagcaaaag tatacacttc atatttattt gcaacaggtt
     5941 ccatcggaag aaacacaggg aacccagcta agttaacaac atttgaaaca gctcgggatg
     6001 cctctaaagg taatgaccaa gtgtttactc gacgtgcttt cacaatgcac ccatatggag
     6061 ttaaatttaa aaatgcagtt cgtgatgcta acgaaatcac tccaacaaat gcggacctag
     6121 caaaagctgg aaattgggaa aaagtttacg aagacaaaca aatcggtatc gttggtattc
     6181 agcatctagt tgaagaatta ccagctagcg gagcatgata aaagggggcg aatattatgc
     6241 cttacacgac actagaattt tatactaacg agtatgcggg ggagcatttg gaacaggatg
     6301 aatttgacaa actgttaaag catgctgaaa gaaaaattga ttcagtgaca ttttaccgaa
     6361 tacgcaaaag cgggattgaa tcgtttagcg aatttattca gcatcaaata cagttagcta
     6421 cttgtaatca aatcgagtat ttcaaagagg cgggcggaac aagtgagtta gctgtttcta
     6481 agccggataa cgtatcaatc ggaagaactt ctattagtga tagtaatttt gcatcaactg
     6541 ctacatcact taatagcgga ttgattggta gcgatgtaag gtcctattta gcgcatacag
     6601 gtcttcttta caacggggta ggtgttcgtt aatgaaagta gtaaaaccga taacaaatgc
     6661 ccctccgttg cctcttgact ggctaattca taacattagt tatgaagcgt ataaagaaga
     6721 agatagacat aatcaagtcg tttatgaaaa aggcattgag attgaacatg ttcgtgttga
     6781 tttctcaaaa tcaaatcaaa tcgcgggatt atccgatagt gatagatatg acgcggttat
     6841 ctttattgat gcagtgaaca gcatgaacgt gccagctgat tttataagta gatcgagaat
     6901 ttttttctct ggaaaagctt ataagattgt caaagttata ccttgttatg cgacctctga
     6961 aaatgtgcac cattgggaga tagaggtggt ttgatgccga ttaaagttaa tattgacctt
     7021 tcaaaagcca aaaagaatgt aaaaaaagcc aaggaaggcg cacaattcgc tttaattaat
     7081 caagccgctg ccgatatttc tttgtatgtc ccctttttgg agggtgattt atcaaatcaa
     7141 tacgttatta tgaacgacaa agaaataatg tggacatcta tttatgcacg gagactctac
     7201 aacggaataa acttcaattt cacactcaca catcatccgt tagctggccc ggaatgggac
     7261 caacgggcaa aagtagataa gttagaaagt tggatagaag tagcgcaaaa atcggttgag
     7321 gagggactat aatgtcatta gattttttag atagtgttat ggatgctatc gaaaacaacg
     7381 tcgatttaaa agatatgaaa ttaagaacag cgatattaaa acccgagtca atcgctttgc
     7441 tactgactcc aaataacgat aaacaaggtt atcaagacgg ctcttatgag cggtcttttt
     7501 cttttaatct aaacggatct agcaagcaag aaatgaaagt tttaggtgtt ttgaatgcaa
     7561 ttgctgctta ttttgataag acagaaatag agagtattca gagcttaaat aacagctttg
     7621 tgctagaaga caaagaaaca actagtgtgc cgaacctcgt ttcggcgagc gatgatggaa
     7681 cattcattta tagcgctagt ttcaaaatca aattatatat tgaaagcgag gaaaaataaa
     7741 aatggctaga attaaaaatg cgaaaacgaa atactttgta gctgaaattg ttgatggtgc
     7801 gggcgagcca gtatggaaac ggctgtcaaa atggattaca aacgtgtcag acgatgggtc
     7861 agataacacc gaagagcaag gcgattatga cggtgacggc aacgaaaaaa cggttgtgct
     7921 aggttactca gaagcttaca cattcgaagg gacacacgat cgtgaagacg aagcgcaaaa
     7981 cttaattgtc gctaaacgta gaacgccaga aaatcgcgga attatgttta aaatcgaaat
     8041 tccagatact gaaacagcaa ttggtaaagc gactgtttcg gaaattaaag gttccgctgg
     8101 cggcggggat gctacggagt tcccagcgtt cgcttgccgt atcgcttatg acgaaacacc
     8161 aaaagttaca aaaccctgag gagagcccgt ccagcgtcga agtggacaag gcgactatta
     8221 cgttaaaagt tggtgaaaca tccactatta ctgcttcagt attacctgtc ggagcaagtc
     8281 aagaagtaac ttttacttct tcaaatccac caaaagcaaa agtaaatgct agtggagtgg
     8341 ttgaaggtgt agcagaagga acagcaaaca taactgttgc atctaaagga agcccttcta
     8401 tcaataaagt agtacaagta acagtggaag cagcagatta ataaataaag cccttactca
     8461 atgtaggggc ttttaaattg gaggaaatca tacatgacac aaaacaatgt aattaatatt
     8521 caattagaag aatcatatca agagtttcag cttggcacgg aactgtttag agttggttta
     8581 ggtgatgaaa tgcgccgcaa atggattgaa gcagatgaga agtacaagaa gaaactggaa
     8641 aagctaaata aatacaacat tgataataca gacgaaatga gttcagaaga atactttaca
     8701 ttagaagaag atgtaaaaga ggctttaact gaagcatatg caattttatt ggatgacgaa
     8761 aaagcattcg ataaatgtta tgcgcaatgc aaagatattt taaaaatgta ccaagtatac
     8821 aatcaagttg cagaaatcat tgtcggttca gtagaaaaac aacaaaatga aattcaaaag
     8881 aaatataaag caaaaatgac taaaaaagcg aagtgattta aatgctttcg ctcgcttttg
     8941 gagttaacga tatttacgaa tacgagggga aagagtataa gctcgattta gcttttgaca
     9001 acgttctaag agtgattgat ttaacggaag ataatagttt atctaatgtg ttcagagcta
     9061 acctcgcaat tgatgtgctt tttgctgatg atatgccttg gccacgttca aatgaggaag
     9121 acaaatacgc gaacattgaa gaaaaatcgt tggtgcttat tgatattttc actaattata
     9181 ttgttaaaga aaatgacgat ggtttgcttt atgatatcga cggaaacaag atgccaagcg
     9241 ctacaaacaa caatgacgaa gcggaagaaa ttgcttcata ttcattaacg caagatgcgg
     9301 attatatcta tgcttctttt ttacaagact acaatattga tttattagat agtcgcggga
     9361 agatgcactg gtataagttt agagcattgt tagaaagttt gcgtgatgat acaacaatta
     9421 aaacgataat cggcattagg caagcggaat taccttctgg aaaaggaaca gaaaaagaac
     9481 gaaacgaatt aattaaactg aaaaacagat ataagttaaa agattagagg tgagaacatg
     9541 agtgatggat cagtagtaat tgagattagt ttagacgata aaaaagcaga caaacaactt
     9601 gatgcttttg aaaaagattt ggaaaaagca ggaactaacg cgggggcggc attagataaa
     9661 gcatatagag aagcggtttc agatattgct agtcaatcga aacgattaaa agacacgttt
     9721 gtaaatgcgt ttaaatcgat gggaagcgct ggctcaaatg ctttaaaagc tagtttgaac
     9781 tttatgcgtg agttgccttc aaatgtacaa gccgcactat ctaaacttgc atcaacagta
     9841 aaaactgggt tcgtaaacgc tgctaaagca tctattacag tgataaagga acttggaaca
     9901 agtatcaaaa acacagcagt taatatcaaa aacggcttct tttcaattgc taagacagtg
     9961 caaagtagta ttgtgtcagc tgttaaagta tcaattaatg tcattaaatc catccctagc
    10021 gcaattaaaa gtgctggaat cagtattaaa tccgcattag taagtagttt gcaagcagct
    10081 aaatcggctg ctatttcttt tgctcaaact actgtaaaag ttattaaaag tattccagta
    10141 gctgctaaaa cagcggctac agcagtgaaa aacagtttcg tagtagctta caaagcggtg
    10201 gtagttgctg cttatatgag cgtaaaagga actattagcg ctgtgaaagc tattcctagt
    10261 gctacaaaat cagcagcgtt agcagtaagt agcgcaatga aaacggcttt tagcgctgta
    10321 gcaagcgcgg cgaaaacgac aggaacaaca gtgaaatcag cattaaaaac aggatttagc
    10381 gctgtgaaat ccggagcgaa agcggctggc caagctggca tttctgcatt aaaaggccta
    10441 ggaaacattg cgaaaagcac tggctcgtta attaaaagtg gattagtaag cggatttaac
    10501 gcagctaaag cggcggcaaa aggtgcaggc gctggaatgc gtgaagcgtt aaaaaattcg
    10561 gttgaaaagc ccgccgaaca agctcgtttt agtgttctta aattagcagc ggcattagga
    10621 cttattgcgg ctactaaaaa cgtcgtaggc agcgctattg ggcgtgttga tacgattgat
    10681 actgcgacta aatcgttaac tgttttaact ggttccgcaa aagatgcaca gttagttatg
    10741 acggatttaa ccgccgctat cgacggcaca ccaattgcgc tcgatgctgt cgcattaggc
    10801 gctaaaaaaa tggtagcagc gggtatgaaa gcagcgaatg taaaacctgt tttcacagct
    10861 attgctgatg cggcgtatgg cgtcggaaat ggttcagaat caattgacca gatgacagat
    10921 gctatctcgg cattgcaagc gagtggcgtt gcttatgcgg atgatattaa caggctagtt
    10981 gacgcgggcg ttcctgcatg gcaaatttta gcaaattcca caggtaaatc tgttggagaa
    11041 atgaaaaaat atgtttccga aggatcttta gaatcaacaa aagctatcgc aatgttgaca
    11101 aaaggcatcg aagaaggaac aactggaatg gctgggaata ctgccaaaat ggcaggtcta
    11161 gcaaaaacag caggtaacac tatcagcggt tcatttgcaa acatgaaaac cgcagccgtt
    11221 aagagccttg ctaatatcgc cgaaaactta aaaggtccga ttattcaagc gctagatgtt
    11281 gctaaaaacg catttaaaca gtttgcggca gtaacagcaa gtcctgaatt ccagaaaaaa
    11341 ctttctgatt taatccaaaa aattaaagag tttatacctg ttttaatcga atgggcgcca
    11401 ttgttggcaa aagtagccgc tggatttgtg acttttaata ttattagtag cgtattttca
    11461 aaagtagcta aactagcagg agcgataaaa agtttgacgt ctagcgggtc actactttca
    11521 gttgtagtta atacaattaa agggtcattc gttaaattag caggaacact cggctcaaca
    11581 actgctgctt tcggcgttgt tgctgcggcg gttggcgcag tgatagctgt tatctatgga
    11641 atgtataccg cttttaagga aaacacggcg gggataaaaa gctttctatc tggcatgtgg
    11701 gaagcggtga aaaactcatt cggcaagata atagatgttt tcaaacaaat agtatcagcc
    11761 ctaaaacccg tcggaagcgg gtttaaagac atattgaaat atatcggcgt gggggcgtgg
    11821 attgtacttg gtttcgcttt agcggctgtc gttgatatta ttcaagtgct agcacgaata
    11881 gtgttagtag ctattaaagc gttacaggga ctttactatg ctattaaagc agcatttcaa
    11941 gcgctacaag gtgatttaaa aggtgctaag aaaagcttag aaaagtccaa agatgccttt
    12001 gtcgatgctg gctcagctat taaagatgct tttaataaag ataattatgc attaactggt
    12061 actgttgaag ccttcaaaca aatgggtgga gaagccgaaa aaacagcgaa gaaaacagaa
    12121 acatcaggta aaaagataaa agacacatta aaactagtag aatctactgc taagcaaaca
    12181 gaaacaacag tttcgaagtc aaatcaagca atagatacga tgttaagcgg tggagtagat
    12241 cagtacggca ataaacttag tgagaaaact aagtcgttct tgaattctgc taaagaacta
    12301 tacagtcagt atcaagaatc agctaaaaag tcacaagatg cttatactgc tgctatggaa
    12361 aaagcgcaaa ctttagaagg agataagcgt aaaaaagcta tagcggatgc gaacacagcg
    12421 ttggtatcag aaatcaataa aaacaacggt acacttttaa cccttcaagc agattatgca
    12481 aaactgttga aaggcaataa gtgggtcgac ggcacagaat taactgcaca acaaaagaaa
    12541 tttttacaac aacaaacggc ggatattcaa gcagagttag caaaacaaaa ccagctttat
    12601 gtagaaggca atttgctgaa attagcaaac ggcaagacgt taaacgaaaa agaacgctct
    12661 acaagcatcg aagtgcaaaa aagcttatat gcagatagaa aaaaagcagt cgaaactgga
    12721 gaaaaagaac tagctgattt gaaaaagaaa aaagcggacg cttcaactga aactgaaaaa
    12781 gcaaactatc aaattcaaat cgacgaacaa acgaagaaga acaaaacatt agccggaaac
    12841 ttacaaaaat gggctagtga aatgaatgct attatcgcga atggcgggac tttaaacgca
    12901 gaaacttttg caaaaggttt gtcagaaatg ggaaacatta gcgacgaaca actaagcgca
    12961 gtttggcaag actttgtaaa agtgagcggt tctattgaca acacactagc aggattaggc
    13021 gctattatga gccaacgcgg tggggaaggt gttcaagcgt ttgttacagc acttcaaagc
    13081 ggagattata caacagctgc attaaatatt aacaatgatg ttatgaatac tctttcaact
    13141 ttgccaaacg gcatgttcca aaacgggcaa agtggcaagg accaatttat cgctgcgatt
    13201 aaatcagggg attttcaagg agctggcaaa tttttacttg atggagtgaa attaggagca
    13261 tctcctcttc cgggcgagat gaacaatatc ggaaaacaag gcggaaatgc aaacgcggac
    13321 ggcttgaaga gtacagctga agcaaataaa agcgctggcg ccgaactcaa aaacaatgca
    13381 aaaaatggcg cttttgaccc gaatttattc aaaatgacag gagcaaataa cgcatctggt
    13441 tttaatggcg ggatattaga cggaaaagga aatgcttttt cagcagggac tggtataggt
    13501 aactctgcta aaagcggcgc tgcctctgtt gattctagcg gagttggttc tgacttcgca
    13561 tccggatacg cgcaaggtat agctagcggc ggcgtgatgg ttgctggtgc tgcatctgca
    13621 ttagcaaata aagcactagc agcagttcag aaaaaacaag actcgcattc accttcgaaa
    13681 gagtcgaaaa aactaggtgg agacttcgga actggttatt cattaggtat agcagacaaa
    13741 aataaagcag tgacgaaagc ggcaaataat ctagtagcta gcgctttagg aactgaatca
    13801 caaattaaga agctgtctag tacgttgaaa gacaaaatat cctcagcgat tgacgcggga
    13861 ttacattcta agaataagag tgccgggcaa cttaaacaag ctaaagcact gaatagcata
    13921 gaaggctata tcgggcaaca aacaaacaag ctagcggcaa cagctaaaaa acgtgataaa
    13981 gtagtcgctc aattaaaagc cgctaacaca aagatggctg acttgacgaa acaaagtaaa
    14041 gagtatgcgg cttcaatcac agaaaaaatg caaagctatg gatctattag caacgtagac
    14101 ccagaaaatc cgcagtcgat tcagcaagaa atgcaaaaac gtttaaaaga aatcaaagct
    14161 ttccaagcga atgttgaaaa actgcgcaaa aaaggcgtta gtaaagacat tataagcgac
    14221 atcttagaat cgggagtaga aaatggttca tcatatgcgc aagctcttgc taaatctgat
    14281 gctaagacta tcaaagcgat taatagcacg cagaatcaaa tcaattccgc ttcaaaatcg
    14341 atgggtaaca cagcggctaa tgcgatgtat agcgctggta ttaacgcggc gaaaggtcta
    14401 ataaacggac ttaacagtca gaagaaacaa ctagaaaaca cagctaagag catcgctaac
    14461 acaatcacta attcggtgaa aaaggcgctt agaattcatt cgccttcacg tgttgcggtt
    14521 gagctaggta agttctttac tggcggtctt ggaaatggtg tcttagctgg tgctaaaggt
    14581 gcggtgcaat caactaacaa aatggttgat aaggtagtaa acgctgcttc taatatgacc
    14641 gtcccagcta taactttgcc gaagatttcc gcagaaaaag cgttaggtct aaaaagcgta
    14701 gatctaaaca gaactatcac cgttaagacg attattgata ataagacaaa agagtctagc
    14761 aatgcagatt taatcaaggc aattcaacaa tctggggaca gacctatcat tttcaatgtc
    14821 gatggtaaaa acttagcaga aaatgcaaac aatagaatag gtacgatggg taatttagga
    14881 ctttatggag gtggcttact ttgaacaaaa aaacagattt atatttaatg caagcgaata
    14941 aaattatcaa gttaaacgaa aaacataact ttgaaataag tgaagtaagc cgcgctagtc
    15001 ctcaaattat caataattat actagctatg agtttagcga cggcaatcgt tcgagtgata
    15061 gtaatttcga tagctttgat attgaattta catgcagatt tacaacgaac ggaaatgtag
    15121 attatcacgt tcgacttgat gaattattcg aggatatttt tatcagaaaa gaatactaca
    15181 tttttcatac gaaaacgccc ggaaaaaaat attgcgttca tccgggcgct tttgatgtag
    15241 aaagaaaagc ggctggacat gcgcagttta cgctaacatt tgaagtcttt aaaggattta
    15301 gcgaatcgct aggcactagc ctttctcctt ttgctttcag cgaagggatt tggcaagcag
    15361 gacaaggcgt tgtatctcaa aattataagt ataagcacac ttcaaacaga tttagtattt
    15421 acaacgctgg aagcttcgat attgacccac gtatgcacga tttaagaatt actattaaga
    15481 actgccgaag cgacggctta ttgacaatta acaataaaag tacaggtgaa aaattcgtat
    15541 tcaatgagaa aatctacgct tatgacacga tcgaactgga cggcagtaac atcttgaaaa
    15601 atggtatacg ttgcggtcgg aaaactaatc tcggtcttat ttcgttgtta tctggtgaaa
    15661 atgaaatcga aatcgagaat gtaagcaaca tcgaaacaac ctgggatttt ccgtttttat
    15721 ataaataaga gtgggtgaga aaatggacat atttgtaagt gactacgaaa agcaatataa
    15781 agaaatttta acagactttg accccgcttc ttttgcggaa acatgggtcg aaaaccagca
    15841 atggcaactg gatttttatg tagagaaaac aaaaaataat caggatgctt ttgatttatt
    15901 gaaacatgaa agtagcgttt atctcgatgg ccaagaattt atagtcaagc aattcactga
    15961 gggctcagtt ggaaaaatag tttattcgga catcatggct acacatatat atttcacgat
    16021 gcaagataat catcaataca atacaatttc cggatctaag agtgcaaaag attgtttaac
    16081 acatattttt tcagctgata aacaaggttt cagctttgaa ctcattgaca aaaacaagat
    16141 tttggaaaac attacgcaag aaaactttgg cgatgggaac ttattgaaac tagttcaaga
    16201 agtgttagat gactataaac ttgttatgct agcagacaat aaacgattga catttattcc
    16261 agtggaggac tacggagagc acacagagaa tgaaatacgc tataacaaac acactaatga
    16321 agtcaaattc gatattgata cattatcact aaaaacacaa attcgaggct tcggtaaagt
    16381 agatagtaat ggaaataatt attttccgcc agtcacttac actagtccag aagcagaaaa
    16441 gtggggcgtg agaatacagg aaccgctaag agacgaacga tacacgactg ctagcagcat
    16501 attaagacgc ttggaattgg agttgcaaga ctatccatct acaactggta atgtctcttt
    16561 aaagcttaaa tacgaatgcg gaaaaggcga ttatgtaatg tttgtttatg aaccactggg
    16621 ccttttatac gaagttcaaa tagtcgctta taagaaatac atttttacaa acaaaccgcc
    16681 agagctgaca ctctcaaaca ataaaaagac gatggtttcc atcatggttc aactagcaaa
    16741 agcgattaag aaaggagcaa aatagatgga tttaaaaaaa tggcaagacc cgctcatgaa
    16801 ctcagaacta cagcaagact ataacgataa tttagtaaaa ctagctggaa gtcttgaaaa
    16861 agctaatcaa gatatgacgc atgtaaatca acgtatatct aacttagtta ttaaatccgg
    16921 cgggaatgaa tcgaatgaag tagtagacgc acgcgtttct tctctggttc cagaaactga
    16981 attcacaaca ttaaacgata gaataaatta cgcggaaaat gcgttggttt caggtattgg
    17041 gaagctttca acgaacgttt atgacctaat ggataagtac aacgatatag ataccatttt
    17101 aaagcgttta tatggcttag atagcagcaa cattgaaata tttgtggatg atgcaagagg
    17161 cgacgatata gcaggaactg gtgaaattga tgcacctttt aaaacaataa ataaagcggt
    17221 aatgactttg cctcgtgtgc taaatagtaa ctctgtgaat atctggattg ttcctggtcg
    17281 ctataatgaa gacgtagtca ttccaccgat tatgggcgga gatatctata ttagatctac
    17341 aaactttgaa acagtagacc ctaccagcag caccggatgc caagttagaa gtatttctgc
    17401 gacaggaagc aacggttatc tatatattgc tggtttagaa gaaactaaca cagcaggaac
    17461 aacaaaaaac tactttatca aagcaataag atgcggtttt gtaagaattt caaaatgtag
    17521 gatggccttc aacactaaag caatagaccc gttcaccgcg gtgtttattg atgcttgttc
    17581 tgctgacgtt aacggctgtt acttcgcttc gcaaaacgtc gatgtgcgcg gttataacac
    17641 tgctagagtc gaggttcaga atatcatcca tggagcaaaa agcgcaatcg gtttgtatcc
    17701 tcaaagtgcc gatattttca atctcaacag cggaacttgg gaagctgata cgcctacgaa
    17761 actgagcggc gggggagtgg ttagaacatg actgaaaacg ttattcataa aaacggtgta
    17821 tatgatttta acgtcacaac gcaagaagat aaaccacttc aaaaatctgt tttttatacg
    17881 caagattctg gcggaacagc tagacttatt tttaatatag ataaagataa tcaagattta
    17941 gtattatcat ctgctgccga attagaactt gcgatgattt tagcgaaagg gaaggagtct
    18001 gagagtaaat atcttgtaaa acccactatt attgatggtg tgaggggaat tgcagaatac
    18061 tcacttacag actcgcaaat agcacatgat ggaaatgcta ttgctgaatt gtatataaaa
    18121 tacaaaaaca gtcaagcaat gcgcgtatat aagtttgaat tcgagataaa aaaagcatta
    18181 atagatagcg actttttccc ggtggcagaa ttttacgtag agcgctggga tgattacgaa
    18241 aaaatattcg atgaatcgtt cgagagatta aacgcaaaat tagatgacgt ggataaaaaa
    18301 gcggatgatt taaaaacaca atttgatgct atgcagccca cgcaattcgc gcaaaaaacg
    18361 gacttaaacg cacatgtaaa taatgcggat attcatgtca cagcgacaga caaaacgagc
    18421 tggaatgcca aagaaacaac ggctagcgca caggctaaag cagataaagc ccttgctgat
    18481 gcaaaagctt tctttgagct atctagcgaa gttcaaagtg tgaatttaac acccaaaaac
    18541 ggatttatag ctactcaacc gttagttgct agatatgtaa aatttgggac tagatttctt
    18601 gttctgattg gtggaatcgt tggcaaaggg acagggactg gaattggagt atgcgcttca
    18661 gtaccaagtt tgttagctcc ggacaccgca tggaataagt tgttttctgc ttctcagcaa
    18721 tcatcttctg ctaataatcg tgcaaacgtt tatatcagta gcgggggaga tattagtgtt
    18781 gttgccgctg gtgatgtgac ggtcaacaca ggtcttgatt gcgtaattta ttttactaaa
    18841 gaggtgacaa catgagtgag ttaataaaag tttttaaata tgatgataac ggcgtatttg
    18901 agcgtgacga cttaattatt ttaaaaaaag gggagaagat tccggatggc tatacactaa
    18961 ttgaaccacc agtaccagca attaatccgg tttttaatac gaaaaagcaa aaatggagtt
    19021 ctggtgaaga agcaagcatt ccagaaccac cagaattgac cgaacttgaa aaattaacac
    19081 aagattatgc agacttaatg ctatatgtag cagaagtcga acagaagacg gaacaaacgc
    19141 aacaagataa tgcaaactta ctattatctt tggcggaggc aggtgttttg taaatgatta
    19201 actggtatga aaaagtaaaa gattattttt taggcggcta ctatactgaa gcagatgtta
    19261 ataaattcgt tgctttaaaa aagataacga gatcacaagc agatgaaata atcgctatga
    19321 aagaagcaaa agccgaatag gcttattttt tatgttgaaa ataggggatg
//
LOCUS       DABQVC010000032        19049 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.032,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000032 DABQVC010000000
VERSION     DABQVC010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 19049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19049
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.032"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..144)
                     /locus_tag="IBJ56_000813"
     CDS             complement(<1..144)
                     /locus_tag="IBJ56_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1146 domain-containing protein"
                     /protein_id="HAM3417077.1"
                     /translation="MYNIIMESPYVIIISHLLFIVITFWALQAINYEKFIKKNHVTQA
                     RLLF"
     gene            complement(266..670)
                     /locus_tag="IBJ56_000814"
     CDS             complement(266..670)
                     /locus_tag="IBJ56_000814"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HAM3417078.1"
                     /translation="MGSLNVSIVTPDGPVYEGVAQMVIARTKAGELGILPGHVPLVAP
                     LKIDIVRLKVESGEEWVAVNGGFMEVNGEEVNILADTAEREQDIDIDRAEKAKQRAEE
                     ELSRAKEQKVDEVMAQLALQRAINRIHAKEHN"
     gene            complement(692..2113)
                     /gene="atpD"
                     /locus_tag="IBJ56_000815"
     CDS             complement(692..2113)
                     /gene="atpD"
                     /locus_tag="IBJ56_000815"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HAM3417079.1"
                     /translation="MSKGQVIQVMGPVVDVKFEGGNLPEIYNALVIEYKSDAEEAPTS
                     QLTLEVAIQLGDDVVRTIAMASTDGVQRGMEVIDTGSPITVPVGTVTLGRVFNVLGNT
                     IDLDEPLPSDIKRNKIHREAPTFDQLATTTEILETGIKVVDLLAPYLKGGKIGLFGGA
                     GVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYFEMKDSGVIEKTAMVFGQM
                     NEPPGARMRVALTGLTIAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVG
                     YQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERK
                     LTEQGIYPAVDPLASTSRALSPDIVGEEHYAVATEVQRLLQRYKELQDIIAILGMDEL
                     SDEDKQSVSRARRVQFFLSQNFHVAEQFTGQKGSYVPVKETVKGFKDLLAGKYDHIPE
                     DAFRSVGRIEDVLEKAKDMGVEV"
     gene            complement(2174..3046)
                     /locus_tag="IBJ56_000816"
     CDS             complement(2174..3046)
                     /locus_tag="IBJ56_000816"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HAM3417080.1"
                     /translation="MASLIDIKQRITSTRKTSQITKAMQMVSAAKLGRAESNARSYEP
                     YVSKIKDVVTHVASTGNSSDHPMLVSRPVHRTGYIVLTSDTGLAGSYNSSVIKEVFQE
                     INKKHTSSDEYAIITVGRSARDFFKARQMNVVLEVQGITDHPIFAEIKDIASNTVQMF
                     EDGVYDEVFIYYNHHINSISSELRKEQLLPLTEFHEKGKETDVDLTTYEFEPSEQEIL
                     EVLLPQYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAIT
                     QEITEIVGGAAALE"
     gene            complement(3084..4598)
                     /locus_tag="IBJ56_000817"
     CDS             complement(3084..4598)
                     /locus_tag="IBJ56_000817"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HAM3417081.1"
                     /translation="MSIKAEEISSIIKQQIENYQSELKVSDVGTVTYIGDGIARAHGL
                     DNAMAGELLEFSNGVMGMAQNLETNDVGIIILGPYTEIREGDEVRRTGKIMEVPVGEA
                     LIGRVVNSLGQPVDGLGPIETTGTRPIEAVAPGVMQRQSVNEPLQTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTSVAIDTILNQADQDMICIYVAIGQKESTVRNAVETLRHHGAL
                     DYTIVVTAAASQPAPLLYLAPYAGVAMAEEFMYNGKHVLVVYDDLSKQAAAYRELSLL
                     LRRPPGREAYPGDVFYLHSRLLERAAKLNDSLGGGSITALPFVETQAGDISAYIPTNV
                     ISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGGSAQIKAMKTVAGTLRLDLAAYREL
                     ESFSQFGSDLDAATRAKLERGKRTVEVLKQDLHKPLKVEKQVLILYALVHKYLDDVPV
                     HDVLRFESEMNTWFDHNHPELLEEIRTTKKLPDEAKLEAALKEFKNTFVPSEEK"
     gene            complement(4625..5164)
                     /locus_tag="IBJ56_000818"
     CDS             complement(4625..5164)
                     /locus_tag="IBJ56_000818"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HAM3417082.1"
                     /translation="MSKDLEVAGRYANALFQVAQDKDLVDVFSEELTELKAALKANED
                     FVKLLENPTFTTEQKKNLASAVFEKINPTLRDFIYLLIDRSREDYLSVIADVYQKRVN
                     DLNGVADADVYSVVPLSEQELTALSRVFATKMNKTKLNIQNHIDKSLLGGVKVVIGTR
                     IYDDSLKTKLKDMERQIKA"
     gene            complement(5161..5673)
                     /gene="atpF"
                     /locus_tag="IBJ56_000819"
     CDS             complement(5161..5673)
                     /gene="atpF"
                     /locus_tag="IBJ56_000819"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HAM3417083.1"
                     /translation="MLQPHLVIGSAFTFGDAFFTLFAFAILLVLIRIYAWKPLMGVMK
                     EREEHIGSEIDAAEESRAQAEQLLAEQKSVLQQARVESQTMIENAKQLGEKEREEIVK
                     TARRESERIKEEAKSDIAREKEDAISALREQVGSLSVLIASKVIEKNLDEKEQSNLIQ
                     DYIERLGDDK"
     gene            complement(5761..5979)
                     /gene="atpE"
                     /locus_tag="IBJ56_000820"
     CDS             complement(5761..5979)
                     /gene="atpE"
                     /locus_tag="IBJ56_000820"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HAM3417084.1"
                     /translation="MSLGVIAAAIAVGLGALGAGIGNGLIVSKTVEGVARQPEARSML
                     QTIMFIGIGLVEALPIIAVVIAFMVLNK"
     gene            complement(6051..6767)
                     /gene="atpB"
                     /locus_tag="IBJ56_000821"
     CDS             complement(6051..6767)
                     /gene="atpB"
                     /locus_tag="IBJ56_000821"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HAM3417085.1"
                     /translation="MEEEFPTISLLGIDFNLSNILMITVTCVIVLLIAIICTRNLQRR
                     PTGKQNFIEWVMDFVRGIINSNMDWKTGGRFHVLGITLLMFIFVANMLGLPFQIAIND
                     EVWWRSPTADPIVTLTLAIMVLGLTHYYGIKMRGFKHYFVGTYFSPMKFLFPLKLVEE
                     FANTLTLGLRLYGNIFAGEVLLTIIATQLAHMNIFVGVLAIIPALLWQGFSIFIGAIQ
                     AYIFTMLTMVYMSHKVSDEH"
     gene            complement(6774..7172)
                     /locus_tag="IBJ56_000822"
     CDS             complement(6774..7172)
                     /locus_tag="IBJ56_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HAM3417086.1"
                     /translation="MLESLIGMYHRHQKYMVLFIAVCLCGWFLTPYIHIFLGLKLGLI
                     VGWFNYWLLMRRTQSMTRALAENRSFYGMGMPFRMGSVLFATIIATQLPEFFHVYSMV
                     IGLGLAYAIIFLDFFVYSMYRRKKFLKREG"
     gene            complement(7366..7533)
                     /locus_tag="IBJ56_000823"
     CDS             complement(7366..7533)
                     /locus_tag="IBJ56_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417087.1"
                     /translation="MTEVLVAVKWTKIILAWQSKKQIDFEIKKISKIIGYSFMDGSDC
                     GTISNRCTHNL"
     gene            complement(8003..9142)
                     /gene="wecB"
                     /locus_tag="IBJ56_000824"
     CDS             complement(8003..9142)
                     /gene="wecB"
                     /locus_tag="IBJ56_000824"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HAM3417088.1"
                     /translation="MAKIKVMSIFGTRPEAIKMAPLVLALEKEPETFESTVVITAQHR
                     EMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHGDTTT
                     SFAAGLATFYQQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADMHFSPTKQAKENL
                     LAEGKDPGTIFVTGNTAIDALRTTVQKDYHHPILGNLGDNRLILMTAHRRENLGEPMQ
                     GMFEAVREIVESREDVELVYPMHLNPAVREKATKILGGHERIHLIEPLDAIDFHNFLR
                     KSYLVFTDSGGVQEEAPGMGVPVLVLRDTTERPEGIEAGTLKLIGTNKENLIKEALNL
                     LDNKENHDKMAHAVNPYGDGFAANRILAAIKSHFEETGRPEDFIV"
     gene            complement(9261..9890)
                     /gene="upp"
                     /locus_tag="IBJ56_000825"
     CDS             complement(9261..9890)
                     /gene="upp"
                     /locus_tag="IBJ56_000825"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HAM3417089.1"
                     /translation="MANVHVINHPLVQHKLTIIRDKNTGTKAFRELVDEVATLMAYEI
                     TRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGL
                     YRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGARNMKFMCL
                     VAAPEGVKALQDAHPDVEIYVAGLDEKLDENGYIRPGLGDAGDRLFGTK"
     gene            complement(10028..11269)
                     /locus_tag="IBJ56_000826"
     CDS             complement(10028..11269)
                     /locus_tag="IBJ56_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HAM3417090.1"
                     /translation="MVYLQKQDKEVFDAIKLELGRQRANIELIASENFVSEQVMEAMG
                     SVLTNKYAEGYPGKRYYGGCEFVDIVEDLARDRAKKLFGAEYANVQPHSGAQANMAVY
                     HTVLEPGDTVLGMNLSHGGHLTHGSPVNFSGVLYNFVEYGVREDTKEIDYDIVREAAL
                     KHKPKMIVAGASAYPRKIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHQNPVPYAD
                     FTTTTTHKTLRGPRGGMILAKAEWEQKLNKSIFPGIQGGPLMHVIAAKAVAFGEALQP
                     EFTAYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEV
                     GITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLHNLENEEV
                     LADVKARVATLTNEYPLYPSL"
     gene            complement(11405..11812)
                     /locus_tag="IBJ56_000827"
     CDS             complement(11405..11812)
                     /locus_tag="IBJ56_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight protein arginine
                     phosphatase"
                     /protein_id="HAM3417091.1"
                     /translation="MKVLFVCTGNTCRSPLAEKLLQNLRPDLDVRSAGTRALDGDAIS
                     ENSRQILAQMNLPTTHQAKKVKKADIDWADQIYVMTQNHQAELKSLFPKASDKIQLIS
                     EDKTDIPDPYGGSIEQYEITYYELKSAISERFL"
     gene            complement(11809..12846)
                     /locus_tag="IBJ56_000828"
     CDS             complement(11809..12846)
                     /locus_tag="IBJ56_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HAM3417092.1"
                     /translation="MQTIHWNINNQQSNQVIFQEAAKLLRSGECVAFPTETVYGLGAD
                     ATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDPFVASYPVKAIQLMEKFWPGPLTVI
                     LPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIDAANIPVAAPSANRSGKPSPTTASH
                     VIEDLDGKIAGIIDGGATGVGLESTVIDCSLDIPVILRPGGVTKEQIEQIIGPVDIAT
                     NNTKETEKPKAPGMKYTHYAPKAPVYLIEGSIQFWQSEINKAEAANKKLGILATKELI
                     NQLNTSGTIEITGSINALDEIATSLYKGLRAFDHADVDVIFAEVYPETELGAAIMNRL
                     EKAAGNRRIRE"
     gene            complement(13147..13998)
                     /gene="prmC"
                     /locus_tag="IBJ56_000829"
     CDS             complement(13147..13998)
                     /gene="prmC"
                     /locus_tag="IBJ56_000829"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HAM3417093.1"
                     /translation="MTQISQLLKNAEAILLEKGLDQNAAEILLETRMGLSRSELWMEI
                     SRELEPNHEKQFEEDFARYLAGEPVQYILKTAPFYGYDFLVTEDVLIPRPETEELVAC
                     AEDFLKKHPVKNVLDVCTGSGIIAIALKKAFPDISMTASDISAPALAVAKKNALLLNA
                     DVRFVETDLLEAFKQNEERFDMIVANPPYISEAEKAEMSDYVLKNEPSLALFAENDGL
                     AIYERFVDNLQYVLNSSFWVGVEIGYTQGERVKQLFEKSYPHSTVIIHKDINSKDRYV
                     TCSNILV"
     gene            complement(13985..15061)
                     /gene="prfA"
                     /locus_tag="IBJ56_000830"
     CDS             complement(13985..15061)
                     /gene="prfA"
                     /locus_tag="IBJ56_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HAM3417094.1"
                     /translation="MYDRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITAT
                     VETYREYKNVNEQINETKELLGEKLDDEMREMAKEEFAELQKEKADLEERLKLLLVPK
                     DPNDDKNVILEIRGAAGGDEAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKE
                     IIAMMNGNDAFSRMKYENGAHRVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDK
                     DIRTDTFASTGAGGQSVNTTMSAVRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARV
                     YDKFEREAREEYDANRKSAVGTGDRSERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGK
                     LDEIIDALILEDQTSKLEHLNDAN"
     gene            complement(15084..15659)
                     /locus_tag="IBJ56_000831"
     CDS             complement(15084..15659)
                     /locus_tag="IBJ56_000831"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HAM3417095.1"
                     /translation="MAQLFFRYGSMNSGKTIEILKVAHNYEEQNKTVAIFTSGIDDRD
                     QVGFISSRIGLKREATPIFSDTNIFEIVANIKPKPNCVLLDESQFLEKEHVFQLAKIV
                     DELNIPVIAYGLKNDFRNELFEGSKYLLLYADKLEEMKTICWFCAKKATMVLRVDDKG
                     KPVYTGEQIMIGGNDHYYPVCRKCHANPPIK"
     gene            complement(15771..16637)
                     /locus_tag="IBJ56_000832"
     CDS             complement(15771..16637)
                     /locus_tag="IBJ56_000832"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HAM3417096.1"
                     /translation="MRIRVPATTANLGPGFDSCGLALTLYLTLDIGAEADSWYIEHNI
                     GGGIPHDETNVIIETALNLAPNLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLA
                     ELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVVGAKLDGEDFYVRHLFPDCALIAFIP
                     KAELLTSESRGVLPDTLPFKEAVQASSIANVMIAAILRNDMALAGEMMERDLWHEKYR
                     SQLVPHLTQIRDVAKSQGAYAACLSGAGPTVLVFAPRNLANTLQTSLQTLEIDADVLL
                     LDVEGSGAEVFR"
     gene            complement(16637..17692)
                     /locus_tag="IBJ56_000833"
     CDS             complement(16637..17692)
                     /locus_tag="IBJ56_000833"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HAM3417097.1"
                     /translation="MYKGLLEKYKEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVT
                     LYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEAVICASTGNTSAAAAAYATRAGLKAY
                     IVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNSVNPYRLE
                     GQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEG
                     AAAIVQGKPIDNPETIATAIRIGNPASWELAEAARDESGGYIHSVTDDEIVNAYKKIA
                     AQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTAMSVHEIPISH
                     VDDIEAMRTHLRSGVKA"
     gene            complement(17695..18981)
                     /locus_tag="IBJ56_000834"
     CDS             complement(17695..18981)
                     /locus_tag="IBJ56_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HAM3417098.1"
                     /translation="MEAKLQVGVLGFGTVGSGVIHILEEHQEKISQVTGYHISVKKVL
                     VRDLEKNRRYETKGFELTTNPSDVLDDPEIAVVVEVMGSITTAREYILQALKAGKHVV
                     TANKDLIALHGDELVAVAQANNCDLFYEASVAGGIPILRTIVNSLAADKIQKVMGIVN
                     GTTNFMLTKMTTEKKSYEDVLAEAQALGFAESDPTNDVDGIDAARKMVIMTRLAFGMN
                     VNLDNVETNGIRGISPEDIDVAYQLGYKIKLVGTAEETNGTVNVNVGPVLLPKAHPLA
                     GVNYENNAVFVTGAAVGETMFYGPGAGELPTATSVVSDLITVAKNSRLGTNGNAFNSY
                     KHETKHTPKEQVFSKYYLRLTMDDKTGTFLKLTQIFAEAGVGFDKILQQPYDDFTATV
                     VIVTHSTSQAQLEQAIARVKDEPEMQMLAKYSVVEG"
BASE COUNT         5360 a         4107 c         3422 g         6160 t
ORIGIN      
        1 aaataataat ctagcttgtg ttacatgatt cttcttgatg aatttttcat aattaatagc
       61 ttggagtgcc caaaaagtaa ttacaataaa tagtaaatgt gaaatgatga tgacatatgg
      121 tgattccata ataatattat acatgcgttc tctcctcata tttcgctact actcatttta
      181 acaaatacct ctagaaaaaa acagttaata cacttatgca tataaaaaaa cttcccggca
      241 ctgtggccag gaagtaatat gattattaat tgtgttcttt tgcatgaatt ctgttgatgg
      301 ctctttgtag tgccagctga gccattactt cgtccacttt ttgttctttt gctcggctaa
      361 gttcttcttc tgcacgttgt tttgcttttt cagcgcgatc aatatcaata tcttgttcac
      421 gttcagcagt atccgcgaga atattaactt cttcaccgtt tacttccata aagccaccat
      481 tgacagcgac ccattcctca ccagactcaa cttttaaacg aacgatgtcg attttaagtg
      541 gagcaactag tggaacatgg ccaggtaaaa taccgagttc acctgctttt gttctagcaa
      601 taaccatttg agcaacgcct tcataaacag ggccgtctgg agtaacaata ctaacattta
      661 atgaacccat acgtatttcc tcctgttttt atcagacttc aacgcccatg tcttttgctt
      721 tttcaagaac atcctcaatg cgtccaactg aacggaatgc atcttcagga atatggtcgt
      781 attttccggc taataggtct ttgaatcctt taactgtttc tttaacagga acataagaac
      841 ctttttgacc tgtaaattgt tctgcaacgt ggaaattttg tgataagaag aattgtacac
      901 gacgcgcacg ggaaacggat tgtttatctt cgtcagataa ctcatccata cctaagattg
      961 cgatgatatc ttgtaattct ttatatcttt gtaataaacg ctgtacttcc gttgctactg
     1021 catagtgttc ttctccaacg atatcaggag aaagcgcacg agatgtagaa gcaagtggat
     1081 ctaccgctgg ataaatacct tgttccgtta atttacgttc caagttagtt gttgcatcta
     1141 aatgggcgaa agttgtagcc ggagccgggt cagtatagtc atcggctggt acataaatcg
     1201 cttggataga agtaacggat ccaacgttag tagatgtaat acgttcttgt aattgaccca
     1261 tttcagtagc tagggttggt tggtaaccta ccgcagatgg catacgacct agtaaagccg
     1321 aaacctctga accagcttgt gtgaaacgga aaatattatc aatgaataaa agtacatctt
     1381 gatgttcttc atcacggaaa tattcagcaa ttgttaaacc agttaaggca acacgcatac
     1441 gcgcacctgg tggctcgttc atttgaccga ataccatcgc tgttttttca ataacaccag
     1501 aatctttcat ttcaaagtaa aggtcgttcc cttcacgagt acgttctcca acgcccgcga
     1561 acactgaaat accaccgtgt tcttgtgcga tattatggat aagctcttga attagaacgg
     1621 ttttacctac acccgcacca ccgaacagtc cgattttacc accttttagg tatggcgcta
     1681 acaagtcaac tactttaatt cctgtttcaa gaatttctgt tgttgttgct aattgatcga
     1741 aagttggagc ttcgcggtga attttgttac gtttaatatc gcttggaagt ggttcgtcca
     1801 aatcgatggt gtttcctaat acattaaata cacgaccaag agttactgta cctacaggaa
     1861 ctgtaattgg gctcccagta tcaataactt ccatacctct ttgaacacca tctgttgatg
     1921 ccattgcgat tgtacgaaca acgtcatcac ctaattggat ggctacttct aaagtaagtt
     1981 ggctagttgg tgcttcttct gcatcagatt tatattcaat aactagggca ttgtagattt
     2041 caggtaagtt tccaccttca aatttaacgt ctacaactgg acccataact tggattactt
     2101 gtcctttaga catgcaatta ttcctcctca cttaccttcc catttattgg gacgttacaa
     2161 gaaacgccga cttctattct agtgcggctg ctcctccgac gatttcggta atttcttgcg
     2221 tgatcgcagc ttggcgagca cggttatatt gtagtgataa gtcactgatt aaatcggatg
     2281 cattgtctgt cgcgcttctc atggcagtca tacgagcagc atgttcagcg gctttggcat
     2341 ccagaagtgc tccgaaaatt aggctttcca catattgcgg caataatact tccagaattt
     2401 cttgttcgga aggctcgaat tcgtatgtag ttaaatctac atctgtttcc ttaccttttt
     2461 cgtgaaattc tgtcagtggt agtagttgct cttttctcag ttcgctagaa atagaattaa
     2521 tatggtgatt ataataaatg aaaacctcgt cataaacacc atcttcaaac atttgaactg
     2581 tgttactagc aatatcttta atttccgcaa atatcgggtg atctgtaatg ccttgtactt
     2641 ctaaaaccac gttcatttgg cgcgctttga agaagtctcg agcagatcta cctacagtga
     2701 ttattgcata ttcatcactt gacgtatgct ttttattaat ttcttgaaat acttctttga
     2761 ttacagaact attgtaagaa cctgcaagtc cagtatcaga agtaagtacg atataaccag
     2821 tacggtgaac aggtctagat acaagcattg gatgatcact actgttacca gtgctagcaa
     2881 catgtgttac tacgtcttta attttagaaa cgtaaggctc atatgaacga gcgtttgatt
     2941 ctgcacgacc tagttttgct gctgaaacca tttgcattgc ttttgtaatt tgacttgttt
     3001 tacgtgtaga agttattcgt tgtttaatat cgattaaaga tgccaaagat tttcaccacc
     3061 tttgaattta ttccgagtct aaattatttt tcttcagaag gaacaaatgt atttttaaat
     3121 tctttcaatg ctgcttcaag tttcgcttcg tcaggaagtt ttttcgttgt acgaatttct
     3181 tccaaaagct ctgggtgatt atgatcaaac catgtattca tttcggactc aaaacgcagt
     3241 acatcatgaa ctggtacatc atccagatat ttatgaacaa gtgcataaag aatcaatact
     3301 tgtttttcaa ctttcaaagg tttgtgcaaa tcttgtttta gaacttctac tgtacgttta
     3361 ccacgttcta gtttcgcacg agtagctgca tctaggtcag agccgaattg tgagaaggat
     3421 tctagctcac ggtaagcggc aaggtctaga cgaagtgttc cggcaacagt tttcattgct
     3481 ttaatttgcg ctgatccacc tacacgagat acagaaagac cggcattgat cgctggacgt
     3541 actccggaga agaataaatc agattgcaag aagatttgtc cgtctgtaat cgagataacg
     3601 tttgtaggaa tataagcaga gatatctccg gcttgtgttt ctacgaatgg aagagccgta
     3661 atggatccgc cacctaagct atcatttaat tttgcagcac gttcaagtaa acgggagtgc
     3721 aagtagaaaa catcccctgg atatgcttca cgacctggag gacgacgaag taatagagac
     3781 agctcacgat aagcggctgc ttgtttggat aaatcatcat atacgactaa aacgtgtttg
     3841 ccattgtaca tgaattcttc tgccattgca acaccagcat aaggagccaa gtatagaagt
     3901 ggcgctggtt gagatgctgc tgcagttacg acgattgtgt aatctaatgc gccgtgatga
     3961 cgtaatgttt ctacggcatt acgtacagta gattcttttt gaccgatagc aacataaata
     4021 caaatcatgt cttggtcagc ttggtttaga atagtatcaa ttgctacaga tgttttacca
     4081 gtttggcgat caccgatgat taactcacgt tgaccacgac caattggaac aagtgcatca
     4141 atcgctttaa tacctgtttg taatggttca tttactgatt gacgttgcat aacaccaggt
     4201 gctactgctt caatcggacg agttccagtt gtttcaatag gtcctaaacc atcaactggt
     4261 tgacctaatg agttaactac acgcccaata agcgcttcgc caacaggaac ttccatgatt
     4321 ttaccggtac gacgaacttc atcgccttca cggatttcag tgtaaggacc tagaataatg
     4381 ataccaacat catttgtttc taagttttgg gccataccca ttacaccatt tgagaactct
     4441 aacaattcac cagccattgc attatcgagt ccatgagcac gcgcaatacc gtcaccaatg
     4501 taggtaaccg taccaacatc actcactttt agttcagatt gataattttc aatctgctgt
     4561 tttatgattg agctgatctc ttcagcctta atgctcattg atttcacccc tcgttaaacg
     4621 gaaactaggc tttaatttgc cgttccatgt cctttaattt cgtttttaga ctgtcatcat
     4681 atatacgggt tccaataacc actttgactc caccaagaag ggatttatca atgtgatttt
     4741 gaatgtttaa ctttgttttg ttcattttcg tagcaaatac tctcgagagc gccgtaagtt
     4801 cttgttcgga aagtggaaca acagaataaa catctgcatc cgcaactcca ttcaagtcgt
     4861 ttacgcgttt ttggtaaacg tccgcaataa cagaaagata atcttctctg ctacggtcaa
     4921 ttaaaagata aataaaatct cttaatgtcg gattgatttt ttcaaaaaca gcgctggcaa
     4981 gatttttctt ttgctcggtc gtgaaagtag gattttcaag tagttttaca aaatcttcat
     5041 tagcttttaa ggccgctttt aattcagtta gttcttctga aaaaacgtcg actaaatctt
     5101 tatcttgggc tacttgaaaa agcgcattgg catagcgacc tgcaacttcc aaatctttac
     5161 tcatttgtca tcccctagcc tttcgatata atcttggata aggttagatt gttctttttc
     5221 atccagattt ttttcgatga ctttcgatgc aataagaaca gataaggaac cgacttgttc
     5281 gcgaagagca gaaatagcat cttctttttc acgtgcaata tcggattttg cttcttcttt
     5341 tatacgttct gattcacgtc tagcagtttt gacaatttct tcgcgttctt tttcaccaag
     5401 ctgttttgca ttctcaatca ttgtttgaga ttccacacga gcttgttgta aaacactttt
     5461 ttgttcagca agtaattgtt ctgcttgagc acggctctct tccgccgcat caatttcaga
     5521 accaatatgc tcttcacgct ctttcataac tcccataaga ggtttccaag cataaattcg
     5581 gattaaaact agcaaaatcg cgaaagcaaa aagtgtgaag aatgcatcac caaacgtaaa
     5641 tgcggaacca attactaaat gtggttgtaa cacgccagtt tcactccttt ctatacattc
     5701 gcttgaatta ttcgttcaaa acgaaagaga tgaggtttta tttcctcaac ttccttcaaa
     5761 ttatttatta agaaccatga acgcaataac tacagcgatg ataggaaggg cctcaacaag
     5821 accgatacca atgaacatga ttgtttgtag catagaacgc gcttctggtt gacgcgcaac
     5881 accctcgaca gtttttgata cgataagacc gttaccaata cccgcaccta atgcacctaa
     5941 tccaacagcg atagcagctg caataacacc taaagacata taattatcct cctaattttt
     6001 ctaaatatta ttttttatta cttttataaa tgacttattt gaaagttagt ttaatgttcg
     6061 tcacttacct tatgcgacat ataaaccatg gtcagcatag tgaaaatgta cgcttgaatt
     6121 gccccaatga aaattgagaa tccttgccat agtaacgcag gaattattgc tagcacacct
     6181 acaaatatgt tcatatgagc aagttgtgtt gcaatgatgg ttaacaaaac ttcgccggcg
     6241 aaaatattac cgtaaagacg taaaccaagc gttaaagtat tagcaaattc ttctactaat
     6301 ttaagtggga ataaaaattt cattggacta aagtaagtac caacaaaata gtgcttgaaa
     6361 ccacgcattt taataccata gtaatgcgtt aagccaagaa ccattatcgc aagtgttaat
     6421 gtgacaattg gatccgctgt aggtgaacgc caccatactt catcgttaat cgcgatttga
     6481 aatggcagtc ctagcatatt agctacgaaa ataaacatta gtagcgtaat accaagtaca
     6541 tggaatctcc caccggtttt ccaatccata ttactattaa taatacctct gacaaaatcc
     6601 ataacccatt caatgaagtt ctgctttccg gtaggtcggc gttgcagatt tctggtacag
     6661 ataatggcta ttagaagaac gatgacacaa gtcacagtaa tcatcaaaat attagataga
     6721 ttaaagtcga tccctaatag gcttatcgtt ggaaattcct cttccaatta ggttcacccc
     6781 tctcttttta aaaacttttt tctgcggtac atggaataca caaaaaaatc tagaaaaata
     6841 attgcatatg caagcccaag tccgattacc atgctataaa catgaaaaaa ttccggcagt
     6901 tgcgtcgcta taatagtagc aaataacacg ctccccattc taaatggcat tcccatacca
     6961 taaaaagaac gattttcagc caaagctcta gtcattgatt gtgtacgcct cattaatagc
     7021 cagtagttaa accagccgac gattaaaccc aacttaagtc ccaagaaaat atgtatatat
     7081 ggggttaaaa accatccaca aagacaaaca gcaataaaaa gaaccatata cttttgatga
     7141 cgatgataca tgccaattag cgattctaac attcggggcg caatcctttc tttttcaaaa
     7201 gatttttctt tccagatgac cattttgaaa tctcagggag taagtttggt ttgtgaaaac
     7261 aagcacattt tccccaattc atcccaatcc caaacacaca tgaaagcctt atcagcgtgt
     7321 cagttcttag catacaacag ccaaaagaga aaagtcaata cactttcaca aattgtgcgt
     7381 acatctatta ctaatagtac cacaatcgga cccatccata aaagaatagc ctattatttt
     7441 tgagattttt ttgatttcaa aatctatctg tttcttagat tgccacgcca gaattatttt
     7501 tgtccattta acagcaacca acacctccgt aatcgttgag aaaacctatc tcctgttcgt
     7561 gtgatgtttc acaaaaaagg cgataaaaac tctctttcgc acaaataaaa aaacttctac
     7621 cactattggt aaaagaattc gatacgatta ttcgcaaatt tcgcgaccga aagttctttt
     7681 cccaagaaaa agaacggaaa aaacagccgg actcatttat catgagttgc attttgatat
     7741 agagtgcccg tataaattcc aattcagtca acgcaaacct agcgtcggcg ggattgtagt
     7801 gaatactgag cgcagtcttc tatccctatg ctaaaaacaa gctatttttt gggctcttat
     7861 attaataaca ttgaccatct tatcacatgt aacataaaag aactagtgaa aatcgagcgt
     7921 gtaacatatc tgtaacaata aggcgctttc attctgaaaa aagaggaaaa ctagacttca
     7981 acgcctagtt ttccactgtg ttttacacga taaaatcttc tggtcgacca gtttcttcaa
     8041 agtgactctt gattgctgct aaaattcgat tagctgcgaa tccgtcgcca tatggattta
     8101 ccgcgtgtgc cattttatca tgattttctt tattatccag caaattcagt gcttctttaa
     8161 ttagattctc tttatttgtt ccaattagtt tcaacgtccc ggcttcgatt ccttctggac
     8221 gctccgtcgt atcacgtaaa actaaaactg gcacgcccat gcctggagct tcttcttgta
     8281 caccgcctga atcggtaaaa acaagataag acttgcgcaa gaaattatga aaatcaattg
     8341 cgtcgagtgg ctcgattaaa tgaatgcgtt catgtccacc taagattttc gtcgcttttt
     8401 ctctaacggc tggattcaaa tgcatcggat aaacgagttc aacatcctca cgactttcca
     8461 cgatttctcg aaccgcctca aacatccctt gcatcggttc gcctaaattt tccctgcggt
     8521 gagccgtcat aagtattaaa cgattgtcgc caagatttcc caagattgga tggtggtaat
     8581 ctttttgcac agttgttcta agggcatcaa tcgccgtatt tccagtcaca aaaatagtac
     8641 ccggatcttt tccttccgca agcagatttt ctttcgcttg tttagttgga gaaaagtgca
     8701 tatccgccat tacaccagtt aactggcgat tcatctcttc tggaaacggc gaatatttat
     8761 tccatgttct aagtccagct tcgacatgtc cgagcatttt ttgttgataa aaggtagcta
     8821 gtcctgctgc aaaacttgtt gttgtatcgc cgtgaactag aacgatatcc ggattttcgg
     8881 ctgcaataac ttcattaatt ccattcatta cacgcgaagt tatttcagct aaagtttggc
     8941 cttttttcat aatatctaag tcaatatctg gtttaatatc aaaaatctct aagacttgat
     9001 ctagcatttc acggtgttga gctgtaatca ctaccgttga ctcaaatgtt tctggttctt
     9061 tttctagtgc caaaacgagt ggtgccattt ttattgcttc tggtcttgtc ccaaagatac
     9121 tcattacttt gattttagcc aatttcgggc ctccttataa aaaaactcct cagaaatagc
     9181 tcgacaaaaa atttcccagc ctgttaaaaa gcagtactgt ttataattcc ttatctcact
     9241 attaccgagg agattgttat ttatttagtt ccgaataatc tatcgccagc atctcctaag
     9301 cctggacgga tataaccatt ttcgtctaac ttctcgtcta aaccagctac gtagatttct
     9361 acgtctggat gtgcgtcttg aagggcttta acgccttcag gagctgctac tagacacatg
     9421 aatttcatgt tgcgagcgcc gcgttttttc aagcaatcga tagccataat tgcggatccg
     9481 ccagttgcaa gcattggatc tacaacgatg aaaagacgtt cttctacgtc agaaggtagt
     9541 tttacaaaat attcgactgg ttctagtgta tcatggtcac gataaagacc tacatgccct
     9601 acttttgctg caggaataag ttttaaaata ccatcttgca taccaagacc agctcttaaa
     9661 ataggaacaa tccctaattt tttaccagta agtgttttcg cagttgttgt ttgtagtggt
     9721 gtttctactt ggatgtcttc gagttccata tcacgtgtaa tttcgtacgc cattaatgta
     9781 gcgacttcat ctacaagttc gcggaatgct tttgttcccg tatttttgtc tcgaatgatt
     9841 gttaatttgt gttggactag tgggtgatta attacgtgta catttgccat cgattagttc
     9901 gctcctttga tattgaaaat ttccttctct tattgtatca gaacaagaca caagtgcaag
     9961 gattaatttg ctatacatga aaaaaaccgg ttttctctat tttatagaaa aaaccggatc
    10021 acttatttta taaacttgga taaagcggat attcatttgt taaagtagcc acgcgtgctt
    10081 ttacatctgc gagaacttct tcattttcta aattatgcag tacttctgaa ataagtacac
    10141 caactttttc aatcgcaact tcatcaaatc cacgagtggt cactgcagca acacctacac
    10201 ggataccact tgtgacaaat gggctttccg tttcgaatgg aatggtattt ttattcacgg
    10261 taataccaac ttcatctaat actttctccg ctgcttttcc tgttaagcca agtggtttta
    10321 aatcaattaa taataaatga ttatccgaac cacctgttaa aacagcaaca tcattcgctt
    10381 gaagtgtttc tgctaatttt ttagagttac gaataatttg ttcacagtac gccgtgaatt
    10441 caggttgtaa cgcttcacca aacgccactg ctttcgctgc gattacgtgc attaacggtc
    10501 caccttggat tcctgggaaa atcgatttat ttaatttttg ttcccattct gctttggcta
    10561 aaatcattcc gccgcgaggt ccacgaagcg ttttatgggt agttgtcgtt gtaaaatcag
    10621 cataaggaac tggattttga tgcaagccag cagcaacaag accagcaata tgcgccatat
    10681 ctaccattaa gtatgcgcca acttcatcag caatttcgcg gaatttagca aaatcaattt
    10741 tacgtggata agcacttgcg ccagctacaa tcatttttgg tttatgtttt aaagctgctt
    10801 cacgaacaat atcgtaatca atttctttcg tatcttcacg aacgccgtat tcaacaaaat
    10861 tgtataaaac accgctgaaa tttactgggc taccatgtgt taaatgccca ccatgtgaaa
    10921 ggttcatacc aagaacagta tcgcctggtt caagcactgt atgataaact gccatattcg
    10981 cttgagcacc tgagtgtggt tggacattcg catattcagc gccaaataat tttttcgcgc
    11041 ggtcgcgtgc taaatcttcc acaatatcca cgaattcaca tccgccgtaa tagcgtttcc
    11101 ctgggtaacc ttctgcatat ttattcgtta atacagatcc catagcttcc attacttgct
    11161 cactaacaaa attctcagat gcgattaatt cgatattcgc gcgttgtcta ccaagctcta
    11221 acttaattgc atcaaaaact tccttatctt gcttttgtaa atagaccatc tgtggacccc
    11281 atccttttct gataaatttt tcaagtgaac tgttatgtat tatctttaat aattacttaa
    11341 atcggataga aaagcaagca ttttggaata aaaaaacgca atttccgata gtgaagcgct
    11401 tcacttataa aaaacgttcg gaaattgcac tttttagttc gtaataggtg atttcgtatt
    11461 gctcgattga tccaccgtaa ggatctggaa tatctgtttt atcttcggaa attagttgaa
    11521 ttttatcgct cgcttttgga aaaaggcttt ttagttccgc ttgatgattt tgagtcatta
    11581 cgtagatttg gtctgcccaa tctatatctg cttttttaac ttttttagct tggtgcgttg
    11641 ttggcaaatt catctgcgcg agaatttgac gtgagttttc agagatggca tccccgtcca
    11701 gagcacgtgt cccagccgaa cgaacatcta aatccggacg caagttctgc aagagttttt
    11761 cagctaaagg gcttcggcac gtatttcctg tacaaacaaa taataccttc attcgcgaat
    11821 cctcctgttg ccagcagctt tttctaatcg gttcataatc gctgctccaa gttccgtttc
    11881 tggatacact tccgcaaaaa tcacatctac atcagcatgg tcgaaagccc gtaaaccttt
    11941 gtaaagactt gtagcaattt cgtccaatgc atttatactg ccagttattt cgatggtacc
    12001 gctcgtgttt agttgattta tcagttcttt tgtcgccaaa ataccgagtt ttttattcgc
    12061 agcttccgct ttatttattt cactttgcca aaattggata gatccttcta ttagataaac
    12121 tggcgctttc ggggcatagt gcgtgtattt catgccaggt gcttttggtt tttccgtttc
    12181 tttcgtgttg tttgtcgcta tatcaacagg gccaattatt tgttcaatct gttcttttgt
    12241 aacaccgcct gggcgcagaa taactgggat atctaaagaa caatcaataa cggtggattc
    12301 taaacctaca ccagttgcgc cgccatcgat aattccggct atttttccat ctaaatcttc
    12361 tattacatga ctcgccgtcg tcggacttgg ttttcctgaa cgattcgcgc ttggagccgc
    12421 aacaggaata ttcgctgcat ctatcaatgc tagactaaca gggtgttccg gcatacggac
    12481 gcctactgtg gataaacccg cagaaacatt agttgccaaa ctatcttttt tcaatggaag
    12541 aataaccgtt agcggacccg gccaaaattt ttccatgagc tggatggctt ttactggata
    12601 acttgcaaca aatggatcca tttgttcacg acgggcgatg tggacaatta atgggttatc
    12661 tgacggacgg cctttcgctt catatatttt ttgaacagca gcttggttag ttgcgtctgc
    12721 accaagaccg tacactgttt cagttggaaa agccacgcat tcaccgcttc ggagtaattt
    12781 ggctgcttcc tgaaagatta cttggtttga ttgttggtta tttatgttcc aatgaatggt
    12841 ttgcatgaat tccggtcccc tttacataac ttctattata ttttaacgtt ttccgcctta
    12901 tttttacagt attgtttttt aaaacctgta aatcgctatt tttgaacaaa agttatcccc
    12961 aaactgtgga taataacttt gtcaatgggg ataacttctt gtgaaatgtg gataattcgt
    13021 aaagctaagt aaaaaagcca ttttctttat taagatttga ttaaaaaatt tttttgcaca
    13081 acattttatc cacagttttg tggataactt tccaaagaaa aagacgcttc ttttatagaa
    13141 acgcctttat accaatatat tagagcatgt tacgtagcga tcttttgaat tgatatcttt
    13201 gtggataata actgtggaat gtggataact tttttcgaat agttgtttta cacgctcgcc
    13261 ttgtgtataa cctatctcca cccctaccca aaaagaggaa tttaggacat attgtaagtt
    13321 atccacaaat cgttcataaa tagcgagtcc atcattttca gcaaataatg ctaatgaagg
    13381 ttcgtttttt agcacataat ccgacatttc tgctttttct gcttcagaaa tatagggcgg
    13441 attggcgaca atcatatcga atcgttcttc gttttgttta aatgcttcaa gtaaatctgt
    13501 ttcgacaaaa cgcacatccg catttaataa caatgcattc tttttggcca cggcaagtgc
    13561 tggagcagaa atatcagaag ccgtcatcga aatatcagga aatgcttttt tgagtgcaat
    13621 cgcgataatc ccgcttccgg tgcatacatc tagtacgttt ttaactggat gttttttcaa
    13681 aaaatcctcc gcacaagcga ctaactcttc tgtttcggga cgcggaataa ggacatcttc
    13741 tgtcactaaa aaatcatagc cataaaaagg tgctgttttt aaaatatact gcaccggctc
    13801 accagctaag tatctagcaa aatcttcctc gaattgcttt tcatgatttg gttcaagttc
    13861 acgacttatt tccatccaaa gctcagaacg cgaaagtccc attctggttt ctagtaaaat
    13921 ttctgctgca ttttggtcta gccctttttc aagaaggatg gcttcagcat tttttagcaa
    13981 ctgactaatt tgcgtcattt aaatgctcca atttacttgt ttgatcttct aggataagcg
    14041 catcaatgat ttcatcgagt ttaccttcca taatttgatc tagcttttga atggttaagc
    14101 cgatgcgatg gtcggttacg cggttttgcg gatagttgta agtccggata cgttcggagc
    14161 ggtcacccgt acctacagct gatttacggt tggcatcata ttcttcgcga gcttcacgtt
    14221 caaatttatc atatacacgt gcgcgtaata ctttcatcgc tttgtcttta ttttttagct
    14281 gggaacgttc atcttgcatc gatacgacaa tcccggttgg aatatgcgtt agacgtacag
    14341 ctgacatcgt cgtattgaca ctttgtccac cggcaccagt agacgcaaat gtatcagtgc
    14401 ggatatcttt atcgtgcagt tcaatttcta cttcttccgc ttctggcaaa atggctactg
    14461 tcgctgttga tgtatggatt cgaccgcctg attctgtttc tggtacacgt tgaacacggt
    14521 gcgccccgtt ctcatatttc attcgggaaa aggcatcatt tccgttcatc atcgcaataa
    14581 tttctttgta accgccaata ccggtcgggt tcgcgtccat gatttctact ttccagccgc
    14641 gtgattccgc atatttgctg tacatacgga ataaatcgcc ggcaaataaa gctgcttcat
    14701 ctccaccagc tgctccacgg atttctaaaa taacgttttt gtcatcatta ggatcttttg
    14761 gaacgagtaa tagttttagt cgttcttcta agtctgcctt ttctttttga agttccgcga
    14821 attcttcttt ggccatttcg cgcatttcat cgtctagttt ttctcctagg agttcctttg
    14881 tttcgttaat ttgttcgttc acatttttgt attcgcggta cgtttcgact gtcgccgtaa
    14941 tgccggattg ttctttggaa aggtcgcgta gtcgttttgg atccgatact acatctggat
    15001 cacttaataa ctcatttagt tcatcataac ggtcttccac cgcctgtaat cgatcataca
    15061 ttgtatttca acacctcttt taattatttt attggtggat tggcatgaca tttgcgacac
    15121 acagggtaat agtggtcatt tccgccaatc ataatttgtt cacctgtata aactggtttt
    15181 cctttgtcat ccacgcgcag aaccatcgtt gcctttttag cacaaaacca gcaaattgtt
    15241 ttcatttctt ctagtttatc tgcatataat agcaagtatt tcgagccttc gaataattca
    15301 tttcgaaaat cattttttaa accataagca ataactggga tatttaattc atccacaatt
    15361 ttcgctaact gaaatacgtg ttctttttct agaaattgcg attcatctaa aagaacgcaa
    15421 tttggttttg gtttaatatt cgctacgatt tcaaaaatat ttgtgtcact aaaaatagga
    15481 gttgcttctc gtttcagtcc aattcgactt gaaatgaagc caacttggtc tctatcgtca
    15541 atacctgaag taaagatagc cactgtttta ttttgttctt cataattatg tgcgactttt
    15601 agaatttcaa tggttttccc actattcatg gaaccataac ggaaaaataa ttgtgccatt
    15661 aagaccgctc cctttaactt tataaactct tttcctattt tatcatagag cggcacaaat
    15721 tgggacatat agttaaaaaa agctacgccg cataggggca tagcttgatt ttaacgaaaa
    15781 acttctgcgc cgctcccttc gacatcaaga agaagaacgt ctgcatcgat ttccagtgtt
    15841 tgtaaagatg tttgcagtgt gttagcgagg tttcttggag cgaacactaa gacagttggg
    15901 cccgcaccgc tcaaacaagc agcataggct ccttggcttt ttgcaacatc gcgaatttgt
    15961 gttaagtgtg gcactaattg actgcgatat ttttcatgcc ataaatcacg ttccatcatt
    16021 tcaccagcta gcgccatatc attgcgtaaa attgctgcaa tcattacatt ggcgatactg
    16081 ctcgcttgga cagcttcttt gaatggaagc gtatcaggca aaacaccgcg actttccgaa
    16141 gtaagaagtt ctgcctttgg aataaaagca attaaagcac aatccggaaa aaggtggcgt
    16201 acatagaaat cttctccatc taatttcgct cctacgaccc agtttccaag aacagcaggc
    16261 gcaacattat cgggatgccc ttctatttca gcagctatcc gaactttttc ctcttttgaa
    16321 aggttaagtt cagcaagtgt attggctaat tcaatccccg caacaaccgc tgcagaacta
    16381 ctaccgagtc cacgagctgg cggtatatca caggtcatca ctaaatgatg cggcgttaaa
    16441 ttaggcgcca ggtttaaggc cgtttcgata attacattgg tttcatcatg cggaatcccg
    16501 ccgccaatat tatgttcgat ataccaagag tctgcttccg ctccaatatc aagcgttaaa
    16561 tataacgtta acgctaaacc acacgaatca aagccagggc caagattggc cgttgttgcc
    16621 ggtacacgaa tacgcattaa gctttcactc ctgaacgtaa atgtgtgcgc attgcttcga
    16681 tatcatccac atgagaaatt ggaatttcat gcacactcat cgcagtatcc ggatctttca
    16741 agccgtttcc agtaaagaca caaactactg tttcgccttt tttaattgtt ccatttgcta
    16801 catgttggat gacaccagct aatgaagcgg ctgaacctgg ctcgataaag acaccatctt
    16861 gtgctgcaat ttttttatac gcatttacaa tttcatcatc tgttacagaa tggatatatc
    16921 cgccagattc atcgcgagct gcttctgcaa gctcccaact agctggattt ccgatacgaa
    16981 tcgccgttgc aattgtttcc ggattatcaa tcggtttacc ttgaacaatc gcagccgcac
    17041 cttccgcttc aaaaccatgc atccgtggaa gtccagaagc cttggcctca ttccactctt
    17101 taaacccttt ccagtaggca gaaatgtttc cggcattacc tactgggatt gcaaggacat
    17161 ctggagcaga acctaattgc tcacaaattt cgaatgcagc tgttttttga ccttctaaac
    17221 gataaggatt taccgagttt acaagcgtta ctgcttctgt ttcagccagt tcacgaaccg
    17281 attttaacgc ttcatcaaaa ttaccttgaa ttgagataat atctgcgccg tacataactg
    17341 cttgcgctaa ttttcctaga gcgactttgc cttctggaat aacaatgtac gcttttaatc
    17401 ccgcacgtgt tgcgtatgcc gcagccgcag cagaagtatt cccagtggat gcacaaataa
    17461 ccgcttcggc accttcttct ttcgctttag caacagccat aaccattcca cggtctttaa
    17521 aagaaccggt tggatttaag ccttcatatt ttccgtataa agtaacaccc agttctttgg
    17581 acaaattcgg taatggaata agtggtgtat ttccttccgc aagtgagatc attggtgttt
    17641 tatcagttac tggtagatat tctttatatt tttctagtaa acctttatac atatttaacc
    17701 ctccacaacg gaatattttg cgagcatttg catttctggc tcatctttga ccctagcgat
    17761 tgcttgttct aattgtgctt gactagttga atgtgtcacg ataacaacgg tcgccgtaaa
    17821 atcatcatac ggttgttgca aaattttatc aaaaccaaca ccggcttctg caaaaatttg
    17881 cgtcaactta aggaaggttc ctgttttatc gtccattgtt agacgaagat agtatttcga
    17941 gaaaacttgt tctttcggtg tatgcttcgt ttcgtgtttg tagctgttaa aagcattccc
    18001 attagtacca agacggctat ttttagcaac ggtaattaaa tcactaacca cactggtcgc
    18061 agttggtaat tcgccagcac caggtccgta aaacattgtt tctccgactg ctgcaccagt
    18121 tacaaatacg gcattatttt catagttaac acctgcaagc ggatgagcct ttggtaataa
    18181 aaccggcccc acgttgacat taactgtgcc gtttgtttct tccgccgtac ctactagttt
    18241 aattttataa cctaattggt aagctacatc gatatcttca ggcgaaatcc cgcgaatacc
    18301 atttgtttct acattatcta aattcacatt cataccaaat gcgagtcttg tcataataac
    18361 catttttctt gcggcatcga ttccgtccac gtcattcgtt gggtcagact cggcaaaacc
    18421 tagtgcttgg gcttctgcta aaacatcttc gtatgacttt ttctctgtcg tcatttttgt
    18481 tagcataaaa ttggtcgtcc cgttgacgat tcccattact ttttgaattt tatccgcagc
    18541 aaggctgttt acgattgtac gtaaaatcgg aatcccacct gcaacgctcg cttcataaaa
    18601 caaatcacaa ttattagctt gtgcaactgc cactaattcg tcgccgtgta gcgcaatcaa
    18661 atccttattc gcagttacta catgttttcc agctttcaag gcctgcaaaa tgtattcccg
    18721 cgcagttgtg atgctgccca taacctcgac aacaacagca atctctggat catccagtac
    18781 atcagacgga ttggtggtta gttcaaaacc ttttgtttca taacggcgat ttttttctaa
    18841 gtcacgaact agcactttct taacagaaat atggtatcca gttacttgac taattttttc
    18901 ttgatgctct tctaaaatat gaataacacc gctacctacc gttccaaatc ctaacacacc
    18961 tacttgtaac tttgcttcca cttgaaaacc tccttattat tgtttaacaa aacagaaaat
    19021 ttaacttttt taatacctac tcataaaaa
//
LOCUS       DABQVC010000033        18903 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.033,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000033 DABQVC010000000
VERSION     DABQVC010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18903
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.033"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            87..911
                     /locus_tag="IBJ56_000835"
     CDS             87..911
                     /locus_tag="IBJ56_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HAM3417099.1"
                     /translation="MGIMNSLLQQKEMVVKDWLTYYVSVDDPYIFTLKNDHRLMDETG
                     FVLENLFIGMTEDLGKMNAFARELGKAQFITSLGISRILFHIRLLEEFLLDYASEIKT
                     KSANYRELYLFSIKLHQVFSSFTQNLIEGYTRANEQKIIQKENQIIKESTKLIWIAEN
                     VFLLPLIGRITDERAKQLTETALVEVCEQPVNYLIIDLSGVQLESPNIGKYIEYFFSS
                     LKLVGVTPIITGMQPQTAKVMVQVNLTEQHGIKTFATLRQATKTLMKEKEARNARK"
     gene            complement(929..1840)
                     /locus_tag="IBJ56_000836"
     CDS             complement(929..1840)
                     /locus_tag="IBJ56_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HAM3417100.1"
                     /translation="MQNETLIIEESHARERVDKVIAEMMGKSRSAIQLMLKNGDITVN
                     GELAKPNYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPS
                     AGHASGTLVNALLFHCDDLSGINGKIRPGIVHRIDKDTSGLLMVAKNDHAHESLAKQL
                     KDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVRDGKEARTHFEVLERLP
                     GYTLINCKLDTGRTHQIRVHLKYIGHPLAGDPKYGPKNTIKGNGQFLHAAKLGFDHPT
                     TKERMMFEAPLPSSFEKALKSLRQEEY"
     gene            complement(1840..2304)
                     /locus_tag="IBJ56_000837"
     CDS             complement(1840..2304)
                     /locus_tag="IBJ56_000837"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HAM3417101.1"
                     /translation="MYYYLITLAVIALDQLTKWIVVQNMEIGQKIEVIPGFLYWTSYR
                     NDGAAWSILEGHMWFFYLITVVVIGIIIYIMQKYAKGKRLFSISLAFILGGAIGNFID
                     RVLHQEVVDFVQTVWGNYYFPIFNVADAALSVGVVLMLVYVFVDDRKTKGIK"
     gene            complement(2386..3669)
                     /locus_tag="IBJ56_000838"
     CDS             complement(2386..3669)
                     /locus_tag="IBJ56_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAM3417102.1"
                     /translation="MQKFFNKVFRLNEHKTNFRTEFLAGMIGFFTVAYIIVVNSSILA
                     EAGVPYQGAVLATIFISALGCLIMGFWANAPLILMPGMGINALFAYTLVQGMGLSWQV
                     ALAAVTMSGLLFMILAFTPLAGKLNEAIPLILKQAITVGLGLFLIFLGLEKGGIVTRG
                     KHAIIAVGDLGDPFVLATLVTLLLTMILVIRKIPGAFLWSLIIGTVVGVMFGVAGKAG
                     GASISVAPWSDVLFKADFSGMASVGFWSAVFTMTMVIVFETVGLTNGQVRQLKQTEKL
                     PRILKASSLTAFLSGLFGTSPTISALESGSMFASGAKTGLATITTGLFFIASLFLMPV
                     LSFIPNSAIAPILIIIGMSMLQEFKEMDLSNAAETFSALLIIVLIPLTYSIADGIAAG
                     FIAYPILRAFTKNEERTSPVMYVIAALFLLQFIIQ"
     gene            3843..5213
                     /locus_tag="IBJ56_000839"
     CDS             3843..5213
                     /locus_tag="IBJ56_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HAM3417103.1"
                     /translation="MQKTVTYGAKWKQFLTIFTPIVITQLTLFSMTFFDTTMSGNYSN
                     QALAGVAIGSSFWAPVNAAFSGLLMAITPIIAQLIGAKKEKQVKNTVHNGLYIALFLA
                     FILILINFLVVPTILTHMPVTAEVAGIARHFLNGICIGIPAFFISAILRSFIDSLGLT
                     RVTMLITLCTVPFNIFLNYCFIFGNFGFPEMGGAGSGYATGITYWLVVLVSVILIQTQ
                     TRLRKFGIFKGLTALRFSKIKEIIGIGVPNGLTILFETSIFSAVTILMGAFGTETIAA
                     HQSANSVCTLLYAFPLSVASTLTILGGYETGAKRLKDAKQYRHIGMAAAIFIGCVNGA
                     ILFFFRDIIAGFYTNDPALSNLIMHFLVYAILFQFADAVLSPVLGALRGYKDVTVTSI
                     VAFISYWLIGLPVGYGLSFTNLGPFGYWIGLSTGLFVAAFILSIRVRKTEQKLSFNTK
                     DAEISS"
     gene            complement(5229..6161)
                     /locus_tag="IBJ56_000840"
     CDS             complement(5229..6161)
                     /locus_tag="IBJ56_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HAM3417104.1"
                     /translation="MKKIIVVALFALVVVLAGCSSQNSDSKKTDGKLNVVATYSILAD
                     IVKNVGGDKIELHSIVPVGVDPHEYDPLPANIQSAADADLIFYNGLNLETGNGWFDRM
                     LETADKSRDDKEQVVELSKGVKPKYLTEKGKTSETDPHAWLDLHNGIIYTENVRDALV
                     KADPDNADFYKENAKKYINKLATLDKEAKQKFADLPENQKTLVTSEGAFKYFAARYGL
                     KAAYIWEINTESQGTPDQMKQIVGIVEKEKVPNLFVETSVDPRSMESVSKETGVPIFA
                     KIFTDSTAKKGEVGDTYLEMMRYNLDKIHDGLAK"
     gene            complement(6158..7000)
                     /locus_tag="IBJ56_000841"
     CDS             complement(6158..7000)
                     /locus_tag="IBJ56_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HAM3417105.1"
                     /translation="MLFLEGLMQYSFLQKALITSVTVGIVSGVIGSFIILRGMSLMGD
                     AISHAVLPGVAISYMMGMNFFIGAATFGIAAALGIGFVNQKSRIKNDTAIGIVFSAFF
                     ALGIILISFAKSSTDLYHILFGNVLAVRSSDMWMTIIIAIIVISLVALFYKEFLVSSF
                     DPVMAEAYGLNVKFLHYFLMLLLTLVTVSALQTVGIILVVAMLITPAATAYLLTNKLS
                     KMIVLASTFGAVSAIIGLYFSYIFNLASGAAMVLVATIIFFIAFLFAPKQGLLFFKKR
                     EVIE"
     gene            complement(7004..7726)
                     /locus_tag="IBJ56_000842"
     CDS             complement(7004..7726)
                     /locus_tag="IBJ56_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HAM3417106.1"
                     /translation="MEIQGLTIAYKQKVAIDNVTLQIASGKLTGIVGPNGAGKSTLLK
                     GMMGLIPREQGQVTLADKPLTYWRKKIAYVPQRSEVDLTFPITVFDMVLLGTYPALGL
                     IKRPGKKEKQLALDALEQVEMTGFMKRQIGELSGGQLQRVFIARALAQHAEIFFLDEP
                     FAGIDMTSEALIMRLLKKLRDNGKTIVVVHHDFHKVAAYFDDIILLNKKLVAHGPVEQ
                     TFTEEKIQFAYGDAPVAFATGV"
     gene            complement(7886..8302)
                     /locus_tag="IBJ56_000843"
     CDS             complement(7886..8302)
                     /locus_tag="IBJ56_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3417107.1"
                     /translation="METYLEIETLIKRIFNSFRHEVEAVLDKRLSGSEYRVLSLISSG
                     LTKTSELAKTLDVSASHITAITDTLVEEKFITRHRSEVDRRIIELKLTPNAEEFVKEI
                     DKKKKEMIVKRFAVFSEYEQAEFRKLLKKLADGSIK"
     gene            complement(8339..9829)
                     /locus_tag="IBJ56_000844"
     CDS             complement(8339..9829)
                     /locus_tag="IBJ56_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HAM3417108.1"
                     /translation="MEESPQNEPNNVEKDEEQKAKPGNGYIKMKLFPFIMLLFAFVFV
                     TALVTTIVMSLGDDKQVKVSIPERKEFTKLYDVYDEITSKYYKDTKSTTMIDGAINGM
                     VNSLDDPYSTFMSKKESSEFNDTISASFEGIGAEIQEKDGAIVIVSPIKNSPAEKAGL
                     RPQDIITQVDGKSVKGDTATEATQKIRGEKGTKVTLTIQRSNEDKPFDVTITRDEIPI
                     ETVYKEMGSDKIAHVTISTFSETTYDELEKALKSLEKDGMKGLVLDLRGNPGGLLDQA
                     VSISSLFVPDGKIVVQEQDKDGDKSAIKADSSSHGDYKVKVPTTMLIDGGSASASEIL
                     AAAAKESGGIKLVGTKSFGKGTVQTATTLSDDSTLKLTVAKWLTPNSEWIHEKGITPD
                     VVVNMPDYATMTIPSSTKVYKNGDFGDDVKTIETLLKALDYNVGKVDGLYDTDTEYAV
                     QRFQAANKLDVTGIMTGVTTDKLVELTQKHLKETDPQLQKAKALVK"
     gene            complement(9984..10190)
                     /locus_tag="IBJ56_000845"
     CDS             complement(9984..10190)
                     /locus_tag="IBJ56_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HAM3417109.1"
                     /translation="MEKLTLNVEGMTCSHCEARVTKALSEVNGVKSAVVSLDEGTATV
                     EFEKGQVTEDALIDAVEEAGYEVA"
     gene            complement(10203..12416)
                     /locus_tag="IBJ56_000846"
     CDS             complement(10203..12416)
                     /locus_tag="IBJ56_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HAM3417110.1"
                     /translation="MSDKYVRQDLNIFGMTCAACSTRIEKSLNKADGVEKANVNLVTE
                     NAAVYYDPEVTSTEDLIKVVKHAGYDAAEKMSKEEKDAVLEKNFKKEVRRFILSAVLS
                     LPLLLTMVTHIPYIHEMVFAETIGNWINPTIQLVLATIVQFYIGWRFYDGAYKALRGK
                     SANMDVLVALGTSAAYFYSVVEYIRHMIDPSVMPHYYFETSAVLITLILLGKLLESYA
                     TSRTTESIAGLLELQAKEATVIREGKEWLVPVDSLKIGDIILVRPGEKVPMDAEIISG
                     ETSIDEAMITGEPVPVEKKPGDSVIGATINFDGAFQAKITKRMEETVLESIIRLVEEA
                     QGIKAPIQRLADRISGIFVPIVLGIAAVTFIIWYLVTGTVDGSLEAAIAVLVIACPCA
                     LGLATPTAIMAGTGKGAESGILFKGGEHLERTSKVDTIVFDKTGTLTEGKLEVSDKKA
                     ANDHFFPYLFLMEQQSEHPIAKAIIKMLEPENIDASAVKQGKIRAKAGHGMTGNLDDS
                     KVELGAYRYVSSLTTIPKEDDELIESWMHAGKTVVAMAIDGVYAGALALSDTPRPEAK
                     EAIQKLKAQGIKTAICSGDQSVVVENMAKDLGIDMFFAEQLPNDKSALVEKLQQDGHI
                     VAFVGDGINDAPALAASDIGISIGTGTDIAIETGDVTLVSHRLTLIPETIELSKATMR
                     NIRQNFFWALAYNCAGIPIAALGLLAPWVAGLAMAFSSVSVVTNALRLKRYKFKS"
     gene            complement(12431..12724)
                     /locus_tag="IBJ56_000847"
     CDS             complement(12431..12724)
                     /locus_tag="IBJ56_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HAM3417111.1"
                     /translation="MKHDQPIVPRKEDETKLLQNRLRRIEGQIRGIAQMVEDDRYCTD
                     ILVQISAANKALKNVGLQVLEHHTAHCVVDAAKNGEDDVMEDLLKAIRQFSKT"
     gene            complement(12849..13673)
                     /locus_tag="IBJ56_000848"
     CDS             complement(12849..13673)
                     /locus_tag="IBJ56_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HAM3417112.1"
                     /translation="MSSLLTIALAVSISCVHTVEDQYFGGTNADSIAKVEQKSSGNQT
                     LAELEKDPLYPYIDKQNKLTEKDGIKYIENEENMLVLANKDYSLQPTYTPPDLVRPNV
                     TFSFGSQQVEKAQLRKEAATALEEMFVAANKDGKKLFAVSGYRSYKRQQEVFQAEVNA
                     KGDQKAREAVAYPGTSEHQTGLAMDISSENQSYELTEAFGTTPEGKWLQENAHNYGFI
                     LRYMKGREAITKYQYESWHYRYVGKDAATIIYENNWTLEEFFEHVKALQKKVDAAK"
     gene            complement(13731..14432)
                     /gene="deoD"
                     /locus_tag="IBJ56_000849"
     CDS             complement(13731..14432)
                     /gene="deoD"
                     /locus_tag="IBJ56_000849"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HAM3417113.1"
                     /translation="MSVHIEAKQGEIAETILLPGDPLRAKYIAETFLEDVVLFNQVRG
                     MLGFTGTYKGEKVSVMGTGMGIPSISIYVNELIQSYDVKNLIRVGTMGGIQADVKVRD
                     VVIAQAASTDSQINRNTFAGVDFAPVADFSLLKKAYDAGIEKGLSLKVGNVFSADRFY
                     NDQLDKQQLADYGVLGIEMEAAALYTLAQKYGRRALAILTVSDHIFTGEETSAEERQT
                     TFNDMIVVALEAAIK"
     gene            complement(14444..14677)
                     /locus_tag="IBJ56_000850"
     CDS             complement(14444..14677)
                     /locus_tag="IBJ56_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417114.1"
                     /translation="MGRSFYHFLMTYRDPKLTDQKTEFANNAYRDHSFPKQTRNYHIL
                     CDYLEFNAPYLPGMSIFDELWDAYLLDEEKNKH"
     gene            complement(14740..15645)
                     /locus_tag="IBJ56_000851"
     CDS             complement(14740..15645)
                     /locus_tag="IBJ56_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAM3417115.1"
                     /translation="MLKIAVVGLGGIAQKAYLPVFAEMENIEVHLYTRDAQKLKHLSE
                     KYRFDHYHQSIHSMIESGVNAAFVHSSTASHPEVIRTFLANHIPVYVDKPIADNLSEV
                     EELTRLAEEQNTILMTGFNRRYAPKYQELKALTDTNMIIMQKNRAAQPGEARTFIYDD
                     FIHVIDTVRFLLDAQIEQLHVVPVWQENLLASITVQITAGGKVATAIMNRDSGVNEER
                     LAVMTPSAKYEVENVTETHIYEGTTERFERFGDWETTLYKRGFVSIIQAFLTAVRNGE
                     KAPISKEDALETHRLAEEILRKIEN"
     gene            complement(15728..16165)
                     /gene="msrB"
                     /locus_tag="IBJ56_000852"
     CDS             complement(15728..16165)
                     /gene="msrB"
                     /locus_tag="IBJ56_000852"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HAM3417116.1"
                     /translation="MDESKKNERLQQLTDIQYNVTQKAGTERPFQNEFYDNEAKGIYV
                     DIVSGKPLFSSNDQYDAGCGWPSFTKPIDEAEVIEHRDLTHGMIRTEVKSADADSHLG
                     HVFPDGPQDKGGLRYCINSAALRFIPVDKLEEEGYQAYKKIFE"
     gene            complement(16172..16705)
                     /gene="msrA"
                     /locus_tag="IBJ56_000853"
     CDS             complement(16172..16705)
                     /gene="msrA"
                     /locus_tag="IBJ56_000853"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HAM3417117.1"
                     /translation="MTKESLEKATFAGGCFWCMVKPFDTQPGIEKVISGYTGGHTVNP
                     TYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDPTDAAGQFVDRGDSYRPVI
                     FYHNEEQKEIAEKSKAALDASGRFKKPIVTEIAKAETFYPAEEYHQDFYKKEKAHYEG
                     YQVASGRAAFIDANWKG"
     gene            complement(16741..17355)
                     /locus_tag="IBJ56_000854"
     CDS             complement(16741..17355)
                     /locus_tag="IBJ56_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpmS family protein"
                     /protein_id="HAM3417118.1"
                     /translation="MQRETRSAPKKPKRNYWKWVCITLISVLLISAGWIYVAVFKLSP
                     QDEPTPSLISNKSMVEFQTSTTKADLNQLISSYIEDFSKDQDIGYKVFVANNVNFTAE
                     AEIFGEPVELRLKFSPEVVDNGNVELTLKDMSVGALPLPVSYVMNYVSKNYKFPDWVT
                     IMPKKEKIYLSLDKLKLQGGTKVRADTLNLKKDDISFTLLVPVK"
     gene            complement(17371..18156)
                     /locus_tag="IBJ56_000855"
     CDS             complement(17371..18156)
                     /locus_tag="IBJ56_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HAM3417119.1"
                     /translation="MTKKKWLWLTGSVLVIALLVGAVFGIKYYKESKEIPINLVAMGD
                     SLTEGVGDENKEGGYVGIIPKELEEESNIPSVKTSNYGVSGNKITQLEKRLKTNKDFQ
                     EDVKNANVITITIGGNDVMAILQSRLLNVNVDDFTKANKEFQQELETLLKDIRSYNKD
                     AAIFLMGIYNPYTTYFSDIKQFDEIISDWNKASKKTIQQDSNAYFVPIAKVLEDRNAD
                     NKDKPNSLLSDDYFHPNHRGYEKMTSELDKAIVKQLNEGNIPK"
     gene            complement(18171..>18903)
                     /locus_tag="IBJ56_000856"
     CDS             complement(18171..>18903)
                     /locus_tag="IBJ56_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HAM3417120.1"
                     /translation="IYNPKTDITPEEFMVRMAETKELPKSSQPAIGSFVEAYEKYTAE
                     GYEILSIHLTEKLSGTVNAARQAADMVEGNITVVDCDYTARGQAFQVLKAAEMAQSGD
                     YSVEEIHAKINDIRDKTKLYIVVVTLDNLIKGGRVGRMQGFFGSLLNIKLIAKLTDGQ
                     LEEETKVRSNKKVLQYCLNLIKDEPKKIQHLDVVHADGLNLADDFIAESKEITGLTEI
                     PLFFADPVISTHAGTGAFAFMYYTD"
BASE COUNT         5337 a         3993 c         3247 g         6326 t
ORIGIN      
        1 ctacttttac cagaaattag tccaatttaa ctgctctatg tgctatgctg aaatagctaa
       61 aaacatggac ttaagaggtg aatacaatgg gcataatgaa tagcttatta caacagaaag
      121 aaatggtcgt gaaagattgg ctaacgtatt atgtatctgt ggatgatcca tatatcttca
      181 cattaaaaaa tgatcatcgt ttaatggatg aaacgggctt tgttttagaa aatttgttta
      241 ttggaatgac tgaagattta ggaaaaatga atgctttcgc gcgtgagctt ggaaaagcac
      301 agtttattac ttcactcgga atttctcgta ttttattcca tattcgctta ctggaagagt
      361 ttttgctcga ttatgcatca gaaatcaaaa caaaatctgc taattatcgt gaattatatt
      421 tatttagcat caagcttcat caggtattta gtagtttcac gcaaaactta atcgaaggct
      481 atacccgtgc aaatgaacaa aagattatac aaaaagaaaa ccaaattatt aaagaatcaa
      541 ccaaactaat ttggattgcc gaaaatgttt ttctgttacc tttaattgga agaattaccg
      601 atgagcgagc aaaacaactt actgaaacag cgcttgttga agtttgtgag caaccagtga
      661 actatttaat tatcgactta tctggcgtgc agttagagtc tcctaacatc ggcaagtaca
      721 ttgagtattt cttctcttcg cttaaattag taggtgtaac tccgattatt acaggtatgc
      781 aaccgcaaac tgccaaagtg atggttcaag ttaatttaac tgaacaacat ggtattaaaa
      841 catttgcaac cttacgccaa gcaacaaaaa cacttatgaa agaaaaagaa gcaagaaacg
      901 cccgtaaata ggtgttcttg cttctttttt aatattcttc ttgacgtaat gattttaaag
      961 ctttttcaaa ggaactagga agtggcgctt caaacatcat tcgttctttc gttgtcggat
     1021 gatcaaaccc taattttgcg gcatggagaa attggccatt gcctttgatt gtatttttag
     1081 gtccgtattt tggatctcct gctaaaggat gaccaatata tttcaaatga actcggattt
     1141 ggtgcgtacg tccagtgtct aatttgcaat taattaatgt gtaacctggt aaacgctcta
     1201 atacttcaaa atgcgttctc gcttctttcc catcgcgtac gactgccatt ttttggcggt
     1261 cttcttttgc acgaccgatt ggcgcttcaa ttgttccttt ttggtggaca atgtcaccgt
     1321 ggacaagtgc gatatattct ctatccgaag ttttgtcttt taattgtttg gctagtgatt
     1381 catgggcatg gtcattttta gcaaccatta ataagccaga tgtatcttta tcaattcggt
     1441 gaacaattcc tggacggatt ttaccgttaa ttcccgataa atcatcacaa tggaatagta
     1501 aagcattcac gagcgttcca cttgcatgtc ccgcagatgg atgaacgacc attccttcag
     1561 gtttatttac aacaagcata tctttatctt caaaataaat atcgagtgga atatcttctg
     1621 ctaaaacttc tagttcttct ggttcacgca cttcgtaatg aatttcatcg ccaacttgta
     1681 ctttgtaatt tggcttcgca agttctccgt taaccgtaat atcaccgttt ttcagcatga
     1741 gttgtattgc tgaacgactt tttcccatca tttcggcaat cactttatcc acacgttcac
     1801 gcgcatgact ttcttctata atcaatgttt cattctgcat tatttaattc ctttcgtttt
     1861 tcggtcgtct acaaaaacat acacgagcat tagtacgaca ccaactgaaa gcgcggcatc
     1921 tgccacatta aagattggga agtaataatt tccccatact gtctgtacaa aatccactac
     1981 ttcttgatgc aagactcggt cgataaaatt accaatcgca ccacctagaa taaacgctaa
     2041 actaatagaa aatagtcgct ttcctttggc atatttttgc ataatataaa ttataattcc
     2101 aataacaaca acagtaataa gatagaaaaa ccacatatgt ccttccaaaa tactccaagc
     2161 cgccccgtca ttacggtagc ttgtccagta taagaaacca ggaataactt ctattttctg
     2221 tccaatttcc atattttgaa caacaatcca tttagttaat tgatctagcg caatcactgc
     2281 tagggtgatt agataatagt acattttccg aaccctcttt tcacatcagt tagataaaaa
     2341 gtacgcgctc ccctttaaaa ataagaagag cgcatcactt ctttgttatt gtatgataaa
     2401 ttgaagcaaa aataaagctg caattacata catgactggt gaagtacgtt cctcattttt
     2461 cgtgaaagca cgaaggattg gatacgcaat gaaaccagct gcaattccgt ctgcaatact
     2521 atacgtcagc gggattaaca caataatcag tagtgctgaa aaagtttctg ccgcattcga
     2581 taaatccatt tctttaaatt cttgcagcat cgacataccg ataataatta aaatcggcgc
     2641 aatcgcactg ttcggaataa aagataatac cggcattaag aaaagggatg cgataaagaa
     2701 cagaccagtt gttattgttg ctaaaccagt ttttgctcca ctcgcaaaca tcgagccact
     2761 ttcaagtgca gagatcgttg ggcttgtacc aaataagcca gataaaaagg ctgtcagtga
     2821 gctagctttt aaaatgcgtg gtaatttttc ggtttgcttc agttgcctta cttgtccatt
     2881 ggtaagtcca actgtttcaa acacaataac catcgtcatc gtaaagacgg cactccaaaa
     2941 accaacgctc gccattccgg aaaaatcagc tttaaagagt acatcactcc acggtgcaac
     3001 gcttatcgaa gcacctccag ctttcccggc aacaccaaac atcacaccaa cgactgtccc
     3061 gattattaaa ctccataaga aagcgcctgg aatttttcga ataactagaa tcatcgttaa
     3121 tagtagtgtt acaagtgttg ctaatacgaa tggatcgcct aaatctccaa cggcaataat
     3181 agcatgtttc ccgcgcgtga cgattccgcc cttctcaagc cctaggaaga ttaagaataa
     3241 acctaaccca accgtaatcg cttgttttaa aattagggga atagcttcat ttagttttcc
     3301 tgcaagtggt gtaaacgcaa gaatcataaa tagtaagcca ctcatcgtaa cagcagcgag
     3361 tgcaacctgc caacttagtc ccattccttg aacaagggta tacgcaaaca gcgcattaat
     3421 ccccatccca ggcattagaa taagcggtgc atttgcccaa aatcccataa tcaaacaacc
     3481 taacgccgaa ataaaaatcg tcgcaaggac tgctccttga taaggaactc cagcctccgc
     3541 taaaatcgag ctattgacga caataatata tgccaccgta aaaaagccaa tcataccagc
     3601 caaaaattcg gtccggaaat tggttttatg ctcgttcagc cgaaatactt tgttgaaaaa
     3661 tttctgcata ctttttcctc attatgaaat tgtccctctc ccaacccgca gagtattgcc
     3721 cctgccacag aactttatta taacaaagat agtacatata cgaaaggaaa agttttttgt
     3781 tacgccgcca gaacgcctta tttatgctat aatctgaatg gatgcaaaaa ggagatgatt
     3841 acttgcaaaa aacagtcaca tatggggcaa aatggaaaca atttttaacg atattcacac
     3901 cgattgtcat tacgcaactc acgcttttct ctatgacatt tttcgatacg acgatgagcg
     3961 gaaattattc aaatcaggca ctggctggtg tagcaattgg gagttcgttc tgggctccag
     4021 taaatgctgc tttttctggg ttactgatgg ccatcacgcc aatcatcgcc caattaatcg
     4081 gagcgaagaa agaaaaacaa gtcaaaaaca cggtgcataa cggtctatat attgctttat
     4141 ttttagcttt tattttaatt cttattaatt ttttggtcgt tccaacgatt ttgacacaca
     4201 tgcccgttac ggcagaagtc gcggggattg ctcgtcattt cttaaatggc atttgtatcg
     4261 gaatcccggc tttctttatt tccgcgattt tgcgttcttt tattgattcg cttggtttaa
     4321 ctagggtaac gatgctcatt acactttgta ccgttccatt taatatcttt ttaaattact
     4381 gctttatttt tggaaacttt ggttttccgg aaatgggtgg agctggtagt ggttacgcga
     4441 cagggattac gtattggctc gttgttttag ttagtgttat tttgattcaa acacaaacta
     4501 gattacgaaa atttggtatt ttcaaagggc ttacggcact tcgtttttct aagataaaag
     4561 agatcatcgg cattggcgtt ccaaatggtt tgacaatttt atttgaaacg agtattttct
     4621 cagcggtaac cattttaatg ggagcctttg ggacggagac aattgcggca catcaatccg
     4681 caaatagtgt ctgcacactg ctctatgctt tcccgcttag tgttgcttct acgttgacca
     4741 ttcttggcgg gtacgagaca ggggcaaaac gcttaaaaga tgccaaacag tatcgtcata
     4801 ttggtatggc tgctgcgatt ttcattggtt gtgtaaatgg tgcaatccta tttttcttcc
     4861 gcgatattat tgctggtttt tatacgaacg atcccgcttt gagcaattta atcatgcatt
     4921 tcttagttta cgcgatattg tttcaatttg cggatgctgt cctgtcgcca gttctcgggg
     4981 cacttagagg atataaagat gttacggtca cctcgattgt tgcctttatt tcttattggt
     5041 tgattgggct tccagtaggc tacggtttat cgtttacgaa tcttggccca ttcggttact
     5101 ggatagggtt aagtactggc ctgtttgtcg ccgcatttat tttatccatt cgggttcgta
     5161 aaacggagca aaaactttct ttcaacacaa aagacgcaga gatttcgagt taatctctgc
     5221 gtcttttttt atttggctaa accatcatga attttatcta aattgtaccg catcatttct
     5281 aaatacgtgt cgcccacttc acctttttta gcagtggagt ccgtgaagat ttttgcaaaa
     5341 attggtacgc ctgtttcttt agatacactt tccatactac gtggatctac gcttgtttcg
     5401 acaaataaat taggtacttt ttctttttcc acgataccga caatttgttt catttggtct
     5461 ggagtacctt gactttctgt atttatctcc caaatatatg ctgcttttaa tccgtagcga
     5521 gctgcaaaat atttaaaggc accttcgcta gttactaatg ttttttgatt ttctggcaaa
     5581 tctgcaaatt tttgttttgc ttctttatcc agagtagcta atttgttgat atattttttc
     5641 gcattctctt tataaaaatc cgcattgtct ggatccgctt ttacaagtgc atcacgaaca
     5701 ttttcagtat agataattcc gttatgaaga tcaagccatg catgtggatc tgtttcagac
     5761 gtcttgcctt tttccgttaa gtatttgggt tttacacctt tacttaactc caccacttgc
     5821 tccttgtcgt ctcttgattt atccgccgtt tctaacatac gatcaaacca accattccct
     5881 gtttccaaat tcaatccatt gtaaaagatt aaatcagcat ccgcagcact ttgaatgttg
     5941 gctggcaagg gatcatattc atgtggatca acgccaacag gcacaatact atgcagttca
     6001 attttatccc cgcctacatt ttttacaata tctgctaata tcgaataggt ggctacgaca
     6061 tttaatttgc cgtctgtttt tttcgaatcg ctattttgac tggaacaccc cgcaagcaca
     6121 actactaatg cgaaaagagc tacaactatt atttttttca ttcgataacc tccctttttt
     6181 taaaaaatag caaaccttgt ttcggtgcga ataaaaaggc aataaagaaa ataatcgtcg
     6241 caactaaaac catcgccgca ccagatgcta agttgaaaat gtaactaaag taaagtccga
     6301 taatcgcact cactgctcca aatgtagaag ctaaaacaat cattttggat aatttattcg
     6361 taagcagata agctgttgca gctggcgtaa ttaacatcgc cacaactaaa atgattccaa
     6421 ccgtttgcaa agcggaaacc gttacaagtg ttaaaagtaa catcaagaag taatgcaaga
     6481 atttcacatt gagaccatat gcttctgcca tcactggatc aaatgaacta actagaaact
     6541 ctttgtaaaa tagggctact aatgaaatca cgataatggc aataataatc gtcatccaca
     6601 tatccgaact ccgcaccgca agcacatttc caaataaaat atgatacaaa tccgtactac
     6661 ttttcgcaaa ggatattaaa ataataccta gtgcgaaaaa agcgctaaac acaataccaa
     6721 tcgctgtatc attttttatc cgactttttt gattaacaaa accgattcca agtgccgctg
     6781 caatgccaaa tgtagctgca ccaataaaga agttcatacc catcatataa gaaatcgcta
     6841 ctcctggtaa caccgcatga gaaatcgcat ctcccataag cgacatacct cgtaaaataa
     6901 taaaactacc aataacacct gaaacaatgc caactgtcac agaagtaata agtgcctttt
     6961 gtaaaaaact atactgcatt aatccttcta aaaacaacat ctattacacc cccgtcgcaa
     7021 atgccaccgg tgcgtcaccg taagcaaatt gaattttctc ttctgtaaat gtttgctcca
     7081 ctggaccgtg cgcgactaac ttcttattaa gtaaaatgat atcgtcgaag taagcagcca
     7141 ctttatgaaa atcatgatgg accacgacaa tcgttttccc attatctctt agctttttta
     7201 acaggcgcat aatcagcgct tcactcgtca tatcaatacc tgcaaatggc tcatctaaaa
     7261 agaaaatttc cgcatgttgg gcaagtgctc gtgcgataaa aacacgttgc agttggccgc
     7321 cagatagctc tcctatttgt cttttcataa agcctgtcat ttctacttgt tctaacgcat
     7381 ctaatgcgag ttgtttctct ttttttccgg gacgcttaat taatccgagc gccggatacg
     7441 ttccgagcaa caccatatca aaaacggtaa ttgggaaagt taaatctact tcactccgtt
     7501 gcggtacgta tgcgattttc tttctccaat atgtaagtgg tttgtcagcc aatgtgacct
     7561 gcccttgttc acgcggaatt agtcccatca ttccttttaa taaggttgat ttacctgctc
     7621 catttggacc aacaataccc gttagttttc ctgatgctat ttgaagtgtg acattatcaa
     7681 ttgccacctt ttgtttatac gctattgtta aaccttgaat ttccatctaa accacccttt
     7741 tcccacaaga ctaattttta cacataacta aaaatgtttc cccagagcaa ctttagttca
     7801 aagtataacg gagaatcttt ttcttgtaaa gtaaaatgtt caaaaaaatc ccgtagtcga
     7861 ttaaactaca ggattttcac tattattatt taattgatcc gtctgctaat tttttgagca
     7921 gtttgcggaa ttctgcttgt tcatactcag aaaaaacagc aaaacgtttt acaatcattt
     7981 cttttttctt tttatcaatt tctttgacaa attcctcggc atttggggtt aatttcagtt
     8041 caataattcg gcggtctact tctgaacgat gtcgtgtaat aaacttttct tcgactaaag
     8101 tatccgtaat ggctgtgatg tgactggctg aaacatcaag cgttttagct aattctgatg
     8161 ttttcgtaag tccacttgaa atcaagctca agacccgata ctcgctacca cttaaccttt
     8221 tgtcgagtac tgcctctact tcatgacgaa aactattaaa aatccgctta atcaatgttt
     8281 caatttctaa gtatgtttcc attttcgcta cctccagttt ttcaaaaaag tcgtacgttt
     8341 acttcaccaa ggcttttgct ttttgtagtt gtggatctgt ttcttttaga tgtttttgtg
     8401 ttaattcgac taatttatcg gttgttacac ctgtcataat tcctgtcaca tctaatttat
     8461 ttgctgcttg gaatctttga acagcatatt ctgtgtctgt atcgtataag ccatctactt
     8521 tcccaacatt gtaatctagt gcttttagca atgtttcaat ggttttaaca tcatcaccga
     8581 aatcgccatt tttgtagact ttggtggaag acgggatagt catagttgca taatctggca
     8641 tgttcacaac tacatctggc gtaatacctt tttcatgaat ccattcgcta ttaggtgtta
     8701 accattttgc gacagttaat ttaagcgtgg agtcatcaga taaagttgtt gccgtttgga
     8761 ccgtaccttt accaaatgat ttcgtgccga caagtttaat gccaccagat tcttttgctg
     8821 cagcagcaag gatttctgaa gcacttgcac taccaccatc tattaacata gtggttggta
     8881 cttttacttt ataatctcca tgtgagctac tatccgcttt aatggctgat ttatcaccgt
     8941 ctttgtcctg ctcttgtaca acaattttgc catcgggaac aaagaggcta gaaatcgaaa
     9001 ctgcttgatc aagtaaccca ccaggatttc ctcgcaggtc aagaacaagg cccttcatgc
     9061 catctttttc aagggatttc aatgcctttt caagctcatc ataggttgtt tctgaaaatg
     9121 tactaatggt gacgtgcgca attttgtcac tgcccatttc tttgtacacc gtttcgattg
     9181 gaatttcatc acgagtaatc gtgacatcaa atggtttatc ttcgttggaa cgttgaatgg
     9241 tcagggttac tttggtgcct ttttcaccac ggattttttg tgttgcttct gttgctgtat
     9301 cgcctttaac agacttccca tctacttgtg taataatatc ttgtggccgt aaaccagctt
     9361 tttcggctgg agagtttttg attggcgaaa ctattacaat agccccatct ttttcttgaa
     9421 tctccgcacc aataccttca aaactagcag aaattgtatc gttaaactct gaagattctt
     9481 ttttcgacat aaatgtggaa taaggatcat ctaatgaatt gaccatacca tttattgctc
     9541 catctatcat cgttgtagat tttgtatctt tataatattt gcttgtaatt tcgtcgtata
     9601 catcgtagag cttggtaaat tcttttcgtt ctggaatgct cacttttact tgcttgtcat
     9661 cccctaaaga cattacgatt gtagtcacta atgccgtcac aaaaacaaaa gcgaatagta
     9721 gcattataaa tgggaataac ttcattttta tataaccatt gccgggtttt gctttttgtt
     9781 cttcgtcttt ctccacgtta tttggttcgt tttgtgggga ttcttccatc tttcttcacc
     9841 actttctatg taaaatgtgg ctagtaatag cacattttat ttaactcatt tattttacca
     9901 gttttccatt cattttggta tctttttttc atgctacaca aaaaaggagg attctggaca
     9961 gaatcctcct tttcgctttt aaattaagct acttcataac ctgcttcttc cacagcatca
    10021 attaacgcat cttctgtcac ttgtcctttt tcaaactcaa cagtagctgt tccttcatca
    10081 agtgatacta ctgcactttt cacgccatta acttctgata aagcttttgt tacgcgagcc
    10141 tcgcagtgag aacaagtcat accttctaca tttaatgtta atttttccat gttaaattcc
    10201 tcctatgatt taaatttata tctttttaag cgaagtgcgt ttgtgacaac agaaacggaa
    10261 ctaaatgcca tcgcaagtcc tgctacccaa ggggcaagta agcctagtgc cgcaattgga
    10321 atacccgcac agttatatgc tagcgcccag aaaaagtttt gacggatgtt tcgcatggtt
    10381 gctttggaaa gttcgattgt ttctggaatg agtgttaaac gatgacttac aagtgttaca
    10441 tctcctgttt caatcgcaat gtcagttcca gtaccgatac taatcccaat atcacttgcc
    10501 gcaagagctg gagcatcatt aatgccatca ccaacgaatg caacgatatg accgtcttgc
    10561 tgtaatttct cgactaaggc gctcttatca tttggtagtt gttcggcaaa gaacatatca
    10621 atacctaaat ctttagccat attttctacg acaacagatt ggtccccaga acaaattgct
    10681 gttttaatac cttgtgcttt tagtttttgg atagcttctt ttgcttctgg tcgtggtgtg
    10741 tcagataaag cgagggcacc tgcgtataca ccatcaattg ccattgctac gactgttttt
    10801 cctgcatgca tccaactttc gattaattca tcatcttctt ttggaatcgt tgtaagggaa
    10861 gaaacatagc ggtaagcacc tagttccact ttactatcat ccagattacc ggtcatgccg
    10921 tgcccagctt tcgcgcggat tttcccttgt ttcactgcgg aagcatctat attctctggc
    10981 tctaacatct taataatcgc tttcgcaatc ggatgctctg attgttgttc cattaagaat
    11041 aaataaggga aaaagtgatc attggctgct tttttatcac tcacttctag tttaccttct
    11101 gttaaagtac cagttttgtc aaaaacgata gtatccactt tagaagtacg ttctaaatgt
    11161 tcgccacctt taaataatat cccactttcg gcgcctttac cagttccagc catgatagcg
    11221 gttggcgttg caagaccaag cgcacaggga caggcgataa ctaataccgc aatcgcagct
    11281 tcaagtgaac catccaccgt tccagtaaca agataccaaa taataaaggt tacagcagca
    11341 atcccaagta caattggtac aaatatgccg gaaattctat ctgccaaacg ttgaattggc
    11401 gctttaatac cttgcgcttc ttccaccaaa cgaataatgg attctaaaac ggtttcttcc
    11461 attcgtttcg taatttttgc ttggaaagcc ccgtcaaagt taatcgttgc gccaataaca
    11521 gaatcgcctg gtttcttctc tactggtaca ggttccccag taatcatcgc ttcatcaata
    11581 ctcgtttcac cagaaataat ttcggcatcc atcggaactt tttcacccgg acgaacaagg
    11641 ataatatcgc caattttcaa tgaatctact ggcactaacc attcttttcc ttctcgaata
    11701 acggtcgctt cttttgcttg taattcaagt aaaccagcaa tagattcggt tgttctcgat
    11761 gttgcgtatg attcaagtaa tttacctaac aagattaagg tgattaacac agcacttgtt
    11821 tcaaagtagt aatgcggcat cacgctcgga tcaatcatgt gacgaatgta ttccactaca
    11881 ctatagaaat aagcagcaga agtcccaagt gcgactaata catccatatt tgcactttta
    11941 cctcgaagcg ctttataagc cccatcataa aaccgccaac caatataaaa ctgaacaatc
    12001 gttgcgagta ctaattggat ggttggatta atccagttac caatcgtttc cgcaaacacc
    12061 atttcatgaa tgtacggaat atgtgtcacc atggtaagaa gtaatggtaa ggaaagaacc
    12121 gccgaaagaa taaaacgtct cacttctttt ttgaaattct tttctaacac agcatctttt
    12181 tcttctttag acattttttc cgccgcgtca taacccgcat gtttaacaac tttaatcaaa
    12241 tcttctgtcg atgtaacttc cgggtcataa tatacggctg cattttccgt tactaagttg
    12301 acattcgctt tttctacacc atctgcttta tttaacgatt tttcaattct cgtggaacag
    12361 gccgcacaag tcattccaaa aatgtttaaa tcttgtctta catatttatc actcatcgta
    12421 tatacccccc tcaggttttc gaaaattgac gtattgcttt aagtaagtcc tccattacgt
    12481 catcttcccc attttttgct gcatctacaa cacagtgtgc tgtatgatgt tctagtactt
    12541 gtaaaccaac atttttgagc gctttattcg ctgctgaaat ttgaactaaa atgtctgtac
    12601 aatatctatc atcctcgacc atttgagcga taccgcggat ttggccttcg atacgtcgca
    12661 aacgattttg aagtaatttc gtttcatctt ctttgcgtgg aacaattggt tgatcgtgtt
    12721 tcattttttc tcctcctttg tttctacaat taacagtata ccccctatag gtattttatg
    12781 caaccattta atttctgaga acaaaaaaaa agccataaac aaatgcttgt ttatggctca
    12841 aaatcttgtt atttcgcggc atctactttc ttttgaagtg ccttaacatg ttcaaaaaat
    12901 tcttctaaag tccagttgtt ttcgtaaata atcgttgccg catccttacc aacataacga
    12961 taatgccaag attcatattg atacttcgtg atagcttctc gccctttcat ataacgcaag
    13021 ataaaaccat aattgtgggc attttcttgc aaccatttgc cttcaggagt tgttccgaat
    13081 gcttctgtga gttcatatga ttggttttct gatgagatat ccatcgctaa accagtttga
    13141 tgttcgctag tacctggata cgctactgct tctctcgctt tttggtcacc tttcgcattt
    13201 acttctgctt ggaagacttc ttgctggcgt ttgtacgatc gataaccaga tacggcgaat
    13261 agtttcttac catctttgtt cgcagctacg aacatttctt ctaatgcagt tgctgcttct
    13321 tttcttagct gtgctttttc gacttgttgg ctgccaaaag agaatgtaac atttggacga
    13381 accaagtcag ggggggtata tgttggttgc aatgaataat ctttgttagc taaaaccaac
    13441 atattttcct cattttcaat atactttata ccatcttttt ctgttaattt attttgttta
    13501 tcaatgtatg gataaagtgg atctttttct aattccgcaa gtgtttgatt gcctgacgat
    13561 ttttgctcca ctttagcgat ggaatcagca tttgtgccac caaaatattg atcttccact
    13621 gtgtggacac aactgatgct aacagctaaa gcaattgtta ataaagaact catatctgtt
    13681 tatcaacctt cctgtataca ttaagtctaa ttctaagtta gtaattaaaa ttattttatt
    13741 gctgcttcaa gtgctacaac aatcatatca ttgaaagtag tttggcgctc ttccgcggat
    13801 gtttcttccc cagtgaaaat atggtcactt acagttaaaa tagctaaagc acgacgacca
    13861 tatttttgtg ctaacgtata aagtgccgct gcttccattt caattccaag cacaccatag
    13921 tctgctaatt gttgtttgtc tagttgatca ttataaaaac ggtctgcaga aaaaacattc
    13981 ccaactttaa gcgataatcc tttttcgata cctgcatcat acgctttttt tagaagagaa
    14041 aaatcagcta ctggtgcaaa atctacgcca gcaaaagtat tgcgattaat ttgcgaatcc
    14101 gttgatgccg cttgtgcaat gacaacatca cgtactttta catccgcttg aatgccgccc
    14161 atagtaccaa cgcgaatcaa gtttttcaca tcatagcttt gaattaattc atttacataa
    14221 atcgaaatag atggaattcc cataccagtt cccataacag aaactttttc gcctttgtat
    14281 gtaccagtaa atcctaacat gcctcgcact tggttgaata aaacgacatc ttccaaaaat
    14341 gtttccgcaa tatattttgc tctcaatgga tctcctggta ataaaatagt ttctgcaatt
    14401 tccccttgtt ttgcttcgat atgtacgctc atcttttttc ctcctagtgt ttgtttttct
    14461 cttcatctag caaataagca tcccaaagtt catcaaaaat agacattccc ggtaaatacg
    14521 gcgcattaaa ctccagataa tcacaaagaa tatggtagtt tcttgtttgc tttggaaaac
    14581 tatgatctcg gtatgcattg ttggcaaatt ccgttttctg atctgttagc ttcgggtccc
    14641 gatatgtcat taaaaaatga taaaatgatc ttcccaacgt acaacacact ccgctctttt
    14701 tatgctttaa ctatagttga tttcctgaaa aaaataaagt taattttcga ttttacgtag
    14761 aatttcttct gcaagtcgat gtgtttctaa ggcatcttct ttggaaattg gtgctttttc
    14821 cccatttcgc acggccgtta agaaggcttg gatgatagat acaaaacctc ttttgtaaag
    14881 cgtcgtttcc caatctccaa aacgctcaaa ccgctctgtt gtcccttcat aaatatgcgt
    14941 ttccgtaaca ttttctactt catatttggc gctcggggtc atcactgcta atcgttcttc
    15001 gttcacgccg ctatctcggt tcataatcgc cgttgccact ttacctcccg ctgtaatttg
    15061 taccgttata cttgctagaa ggttctcttg ccataccgga acgacatgta actgttctat
    15121 ttgggcatct agtaaaaaac gcacggtatc aatgacatga ataaaatcgt cataaataaa
    15181 tgtacgagcc tcacccggtt gcgccgcgcg atttttttgc ataataatca tgttggtatc
    15241 tgttaaggct tttaattctt gatattttgg cgcgtaacgg cgattaaagc cagtcataag
    15301 tatcgtattt tgttcttcag ctaggcgtgt taattcttct acttcggata aattgtcggc
    15361 aattggttta tccacataaa ctggaatatg atttgctaga aaagtccgga ttacttctgg
    15421 gtggcttgct gtagatgaat gaacaaacgc tgcattcacg ccagactcaa tcatagaatg
    15481 aatactttga tgataatgat caaaacgata tttctcactt aaatgcttta atttctgcgc
    15541 atccctcgtg taaagatgta cctcgatatt ttccatttca gcaaaaactg gcaaatatgc
    15601 tttttgtgca atgccgccaa gccctactac cgctattttt aacatgtgta tcgctcctta
    15661 tcacaacaat gccagagaat gatttcgcga tattattcta cgcatttcat tttctggcat
    15721 catgtgttta ttcaaagatt ttcttatatg cttggtagcc ttcttcttct aacttatcca
    15781 caggtatgaa tctgagcgct gcggagttaa tgcagtagcg aagtccaccc ttatcttgtg
    15841 gtccatctgg aaaaacatgc cctaaatggg aatcagcatc agcagatttc acttccgtcc
    15901 gaatcatacc atgggtcaaa tctcgatgtt caataacttc tgcttcatca ataggcttag
    15961 taaagctcgg ccaaccacag ccagcatcgt actggtcatt ggatgaaaaa agcggctttc
    16021 ctgaaacgat atctacataa atgccttttg cctcattatc ataaaattca ttttgaaatg
    16081 ggcgttcggt acccgctttt tgggtcacat tatattgtat atctgttagt tgttgaaggc
    16141 gctcgttctt tttactttca tccatttgat ttcacccttt ccagttggca tctatgaatg
    16201 cagcacgacc tgaagcaact tgatatccct catagtgcgc tttttctttc ttgtaaaaat
    16261 cttgatgata ttcttcagca ggataaaatg tttctgcttt ggcaatttct gtgacaatcg
    16321 gctttttaaa tctaccactc gcatcaaggg ctgcttttga tttttcagca atttcttttt
    16381 gctcttcatt gtggtaaaaa ataactggtc gatacgaatc accacggtca acaaattggc
    16441 ctgccgcatc agtcggatca gtttgttgcc aatatacttc gactaatttc tcatatggaa
    16501 aaactgccgg atcaaatgtg atttggattg cttctgtatg tcctgttgtc ccgctgcaaa
    16561 cttctttata ggttggatta accgtatgac cacccgtata acctgaaata actttttcaa
    16621 ttcctggttg cgtgtcaaaa ggttttacca tacaccaaaa gcatcctcca gcaaatgttg
    16681 ctttttcaag tgattctttt gtcataaaaa tgccccctaa ctaggattca gccagccaaa
    16741 ttacttaact ggtactaaaa gtgtaaacga aatgtcatct ttcttcaaat ttagcgtatc
    16801 agcacgtact tttgtgccgc cttgcagttt tagtttatct agggaaaggt agattttttc
    16861 ctttttaggc ataattgtca cccaatcagg gaatttatag tttttgctta catagttcat
    16921 tacgtaagac acgggcagtg gcaaagcgcc aacggacata tctttaagcg tcaactcaac
    16981 attgccatta tcgacaactt ccggtgagaa tttcaagcgt agttcgactg gttcaccaaa
    17041 aatttcagct tcggcagtaa aattaacatt atttgcgacg aaaactttat aaccgatatc
    17101 ttgatctttg ctaaaatctt ctatataaga actaatcaat tggtttaagt cagcttttgt
    17161 tgtactcgtt tgaaattcaa ccattgattt attgctaatc agggatggcg tgggttcatc
    17221 ttgcgggctg agtttgaata ctgctacata aatccagcca gcagaaatta gaagtacact
    17281 aattaatgtg atacataccc atttccaata attacgtttt ggtttttttg gagccgatcg
    17341 tgtttctctc tgcacgattt taacaccttt ctatttggga atattgcctt cgtttaattg
    17401 ttttacgatg gctttgtcta attccgatgt catcttctca tatcctctat gattaggatg
    17461 gaaataatca tctgacagta gcgaattagg tttatcttta ttatctgcat ttcggtcttc
    17521 taaaactttt gcaataggta caaaataagc attgctatct tgctggatag ttttcttgga
    17581 agctttattc caatcagaga taatctcgtc aaattgtttg atatcgctga aataagttgt
    17641 atatggattg taaataccca ttaaaaatat cgctgcatct ttgttatagg accgaatgtc
    17701 ttttagaagt gtctctaact cttgttggaa ttctttgttt gcttttgtaa aatcatctac
    17761 atttacattt aacagacgag attgcaaaat agccatgaca tcatttccgc caatggtgat
    17821 tgttattaca ttcgcatttt tgacatcttc ttggaagtct ttgtttgttt ttaaacgttt
    17881 ttcgagttgg gttattttgt ttccagatac cccgtaatta ctcgttttta cgcttggaat
    17941 gtttgattct tcttctagtt ctttagggat aatgccgaca tatccgccct ctttgttttc
    18001 atcaccaaca ccttctgtta atgaatcacc catggcaacg agattaatcg gaatttcttt
    18061 tgattcttta taatacttga taccaaaaac tgcgccaaca agaagtgcga taacaagcac
    18121 gctccctgta agccacagcc attttttctt tgtcatatgc aatcactcac ttagtcagta
    18181 tagtacataa atgcaaacgc accagttcca gcatgtgtgg agataactgg gtctgcaaaa
    18241 aatagtggaa tttctgttaa accggttatt tcttttgatt cagcgatgaa atcatccgcc
    18301 agattaagcc catccgcatg aacaacgtct agatgctgaa tttttttcgg ttcatcttta
    18361 attaggttta ggcaatattg taatactttt ttgttgctgc ggactttcgt ttcttcttcc
    18421 aattgtccgt cagttaattt ggcaattaat ttgatattta aaagactacc gaagaagcct
    18481 tgcatccgtc caacacgtcc acctttaatt aaattatcga gtgttacgac aacgatataa
    18541 agttttgttt tgtcacgaat atcattaatt tttgcgtgaa tttcctctac agaataatcg
    18601 cccgactgag ccatttcagc agcttttagt acttggaatg cttgcccacg agctgtataa
    18661 tcgcagtcta caaccgtaat atttccttct accatatcag ctgcttggcg agccgcattg
    18721 acagtaccac ttagtttttc agttaagtgg atagaaagaa tttcatagcc ttcagccgta
    18781 tatttttcgt atgcttccac aaaagaacca atcgcaggtt gagaagattt tggtaattct
    18841 tttgtttctg ccattcgtac cataaattct tctggtgtaa tgtctgtttt agggttgtat
    18901 att
//
LOCUS       DABQVC010000034        18675 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.034,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000034 DABQVC010000000
VERSION     DABQVC010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18675
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.034"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            116..1942
                     /gene="lepA"
                     /locus_tag="IBJ56_000857"
     CDS             116..1942
                     /gene="lepA"
                     /locus_tag="IBJ56_000857"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HAM3417121.1"
                     /translation="MNKEEMNARQKKIRNFSIIAHIDHGKSTLADRILEQTGALTHRE
                     MKNQLLDSMDLERERGITIKLNAVQLKYKAKDGETYIFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVREEIEDVI
                     GLDASDAVLASAKSGIGIEDILEQIVEKVPEPSGDVNKPLKALIFDSVFDAYRGVIAN
                     IRIMDGVVKAGDRIKMMSNGKEFEVTEVGVFSPKATPRDELLVGDVGYLTAAIKNVGD
                     TRVGDTITLANNPAEEALDGYRKLNPMVYCGLYPIDSSKYNDLRDALEKLELNDSALQ
                     FEAETSQALGFGFRCGFLGLLHMEIIQERIEREFNIDLITTAPSVIYHVNLTDGSNIV
                     VDNPAEMPEPGVIESVEEPYVKATVMVPNDYVGAVMELAQNKRGNFITMEYLDDIRVS
                     IVYEIPLSEIVYDFFDQLKSSTKGYASFDYELIGYKASKLVKMDILLNAEKVDALSFI
                     VHRDFAYERGKIIVEKLKELIPRQQFEVPIQAAIATKIVSRSTIKALRKNVLAKCYGG
                     DVSRKRKLLEKQKEGKKRMKQIGSVEVPQEAFMAILKMDESK"
     gene            complement(1988..2425)
                     /locus_tag="IBJ56_000858"
     CDS             complement(1988..2425)
                     /locus_tag="IBJ56_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3417122.1"
                     /translation="MTYSIKEVSKIFNLSIYTLRYYDKQGLLPFVSKNQSGYREFTES
                     DLNLIHTICCLKNTGMPLKQIRTYIDYCMEGPVSIEARKQLLLDHRAAVLKSLEDLTE
                     NLKEVDVKIAKYSSPDAVEIITAERNYVSMEKKKHDLIYPYNI"
     gene            2538..3566
                     /locus_tag="IBJ56_000859"
     CDS             2538..3566
                     /locus_tag="IBJ56_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde reductase"
                     /protein_id="HAM3417123.1"
                     /translation="MKNNVLVTGGTGFLGMHIIFQLLQQGYQVKTTVRSLKSKEKVIE
                     VLQNNGITDFTQLSFVELDLSKDEGWKEAMLDCKYVLSVASPVFFGKFKNEEELIRPA
                     IEGITRILQAAKEAKVKRVVMTSNFGAIGFSNADKNSITTEAYWTDELAKGLSAYEKS
                     KLIAEKEAWKFMENETELEFATINPVAIFGPSQSSHVSGSFDLLKNLLNGSMKRIINI
                     PLNVVDARDVADLHIRAMITPEANGERFIASADGEISMADIAHLLQRERPELVSKMPK
                     KTLPNAAIRAAAIFSKHAKEGELMINMNRQISNSKARDLLGWQPISTKEEAVLAAVDS
                     LAKYGLLD"
     gene            3655..4812
                     /locus_tag="IBJ56_000860"
     CDS             3655..4812
                     /locus_tag="IBJ56_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HAM3417124.1"
                     /translation="MINTNQSSKESSAVYIHIPFCEHICYYCDFNKVFLEGQPVDEYV
                     DLLIKEMELTAAKGPIAPVDTVFVGGGTPTTLNEAQIARLCTAIHNILPLKKDIEFSF
                     EANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIG
                     FENVSIDLIFSLPGQTEADFQDTLKQALDLDLPHYSAYSLIIEPKTIFYNLMQKGKLF
                     LPGQDAEANMYDLLLNEMEKHGRKQYEISNFAKEGFQSKHNITYWSNEHYYGFGAGAH
                     GYVGNTRYSNFGPIKKYMEPLQKNILPTFQQKELTLKEKMEEEMFLGLRKVDGVDKKH
                     FKQKFGQDLDATFANAIQKTTAKGWLENNEENVALTRSGRFLGNNVFQEFL"
     gene            4959..5996
                     /gene="hrcA"
                     /locus_tag="IBJ56_000861"
     CDS             4959..5996
                     /gene="hrcA"
                     /locus_tag="IBJ56_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HAM3417125.1"
                     /translation="MLTERQLLIFRAIIDHFTWTIQPVGSKNLLKEKGLPYSSATIRN
                     EMGVLEEYGFIEKTHSSSGRVPSEKGYRFYVDYLLQPKKLDKSDRQMIRSFFSENYYE
                     MEGLIQNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLILITDQGHVDN
                     HLVTIPEGTTLSDIERMVNILNERLVGLSLDDLKVQIPMEVKELLGKHVRNYESFMHV
                     FSDSFAQASQQKVYFGGKTNILNQPEFHDINKVREMLHLMEEEQDVYELFRDIPDGLQ
                     VKIGRENNNSLMEDCSIITATYNIAGERVGGIVLLGPTRMEYSRMMGLVDVMSRDLTD
                     VLTKLYRDNQN"
     gene            6038..6613
                     /gene="grpE"
                     /locus_tag="IBJ56_000862"
     CDS             6038..6613
                     /gene="grpE"
                     /locus_tag="IBJ56_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HAM3417126.1"
                     /translation="MSEKKNKKERLADEIEQEELNILDETEETVEEEAAADTLTEEQA
                     KILELENKLDEVENRYLRMQADFENVKKRHIADRDASQKYRSQSLAQDLLPALDSFEK
                     ALATTSDQEEVKQILKGMEMVYNQILVAFEKEGIEVIPAVGEQFDPNFHQAVMQDSDE
                     NAGSNEITAELQKGYKLKDRVIRPSMVKVNQ"
     gene            6647..8488
                     /gene="dnaK"
                     /locus_tag="IBJ56_000863"
     CDS             6647..8488
                     /gene="dnaK"
                     /locus_tag="IBJ56_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HAM3417127.1"
                     /translation="MSKIIGIDLGTTNSAVAVLEGGEAKIIPNPEGARTTPSVVGFKN
                     GERQVGEVAKRAAITNPNTISSIKRHMGTNYKETIEGKDYSPQEISAIILQYLKSYAE
                     DYLGETVDKAVITVPAYFNDAQRQATKDAGKIAGLEVERIINEPTAAALAYGMDKTET
                     DQTILVFDLGGGTFDVSILELGDGVFEVHSTAGDNELGGDDFDKKIIDYLVAEFKKDN
                     GIDLSQDKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEVTLTRAKFD
                     ELTHDLVERTIAPTRQALKDANLSASDIDQVILVGGSTRIPAVQETIKKELGKEPHKG
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVMTTLIERNTTIPTSK
                     SQTFSTAADNQPAVDIHVLQGERPMAKDNKTLGRFQLADIPPAPRGIPQIEVSFDIDK
                     NGIVTVRAKDLGTGKEQNIVIKSSSGLTDEEIEKMVQDAEANAEEDKKNKENAELRNN
                     ADQLVFTVDKTLKELEGKVEEEEVKKAEAARDELQEALKGEDFEAIKEKTESLNEIVQ
                     NLSVKLYEQAAAEQQAAGGAEGQEAPQNDDVVDAEFEEVNDDDKENK"
     gene            8630..9760
                     /gene="dnaJ"
                     /locus_tag="IBJ56_000864"
     CDS             8630..9760
                     /gene="dnaJ"
                     /locus_tag="IBJ56_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HAM3417128.1"
                     /translation="MAKRDYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADE
                     KFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGFEDIFDTFFG
                     GGGRQQDPNAPRQGSDLQYTMRLKFKEAIFGKDAEIEIPREENCDTCHGSGAKPGTTP
                     EKCSHCGGKGSINVEQNTPFGRVVNKRTCQYCNGTGKEIKEKCPTCHGKGRVTKTKKI
                     KVKVPAGVNDGQQMRVSGEGEAGINGGPNGDLYVVFVVIPDEFFEREADDIYVEVPIT
                     FVQATLGDEIDVPTVHGKVRLKIPSGTQTGTTFRLRGKGVPHLRGNGTGDQHVIVKVI
                     VPKKLDDKQKEILREFASTTGDKVDEQTSGFFDKMKRAFKGD"
     gene            9832..10775
                     /gene="prmA"
                     /locus_tag="IBJ56_000865"
                     /pseudo
     CDS             9832..10775
                     /gene="prmA"
                     /locus_tag="IBJ56_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464996.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
     gene            10776..11543
                     /locus_tag="IBJ56_000866"
     CDS             10776..11543
                     /locus_tag="IBJ56_000866"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HAM3417129.1"
                     /translation="MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFP
                     SKKTCIAAITAINDDEVFLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELG
                     AHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMF
                     DHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEV
                     NAKLAGLGPRILRTETAPLYCLSAASFYFDLYKNKKE"
     gene            11741..11914
                     /locus_tag="IBJ56_000867"
     CDS             11741..11914
                     /locus_tag="IBJ56_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003142732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HAM3417130.1"
                     /translation="MSKTVVRKNESLEDALRRFKRTVSKSGTLQESRKREFYEKPSVK
                     RKKKSEAARKRKF"
     gene            11934..12380
                     /locus_tag="IBJ56_000868"
     CDS             11934..12380
                     /locus_tag="IBJ56_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HAM3417131.1"
                     /translation="MTLLDKLNEDMKQAMRDKEKEKLSVIRMLKAALQNEAIHQGVKD
                     LTPDDEVTVISRELKQRRDSLAEFDKAGRNDLSDKVRSEIVIVEDYAPKQLTPEELEN
                     IVKATIEEVGASSKADFGKVMSAIMPKVNGKADGGAVNQFVKKYLS"
     gene            12568..13527
                     /locus_tag="IBJ56_000869"
     CDS             12568..13527
                     /locus_tag="IBJ56_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HAM3417132.1"
                     /translation="MLNEFNEVVELSDDTNIQDLFGNNNKNIELLEELLQVKIITRGE
                     SLSITGEEEPVQHTTAVLNELILTVKRGIHIDGRDIAQAVKMQRNGTLIYFHTLFEEE
                     ITKNAKGMPIRPKTFGQRTYIQMIKKHDIVFGVGPAGTGKTYLAVVMAVDAWKKGNVS
                     KIILTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYDIFGTEHTTRLMDRGVIEIA
                     PLAYMRGRTLDHAFVILDEAQNTTIAQMKMFLTRLGYDSKMIVNGDMTQIDLPKGATS
                     GLVNAEQVLKDVKDIGFVYFEHHDVVRHPLVAEIIKAYEGKQN"
     gene            13543..15699
                     /gene="pgpH"
                     /locus_tag="IBJ56_000870"
     CDS             13543..15699
                     /gene="pgpH"
                     /locus_tag="IBJ56_000870"
                     /EC_number="3.1.4.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP phosphodiesterase PgpH"
                     /protein_id="HAM3417133.1"
                     /translation="MKLAKKWRDWYIESGKKYLFPLLLVCFAVVAYFLVCQMTKPESY
                     NVKLFQVAEKTIRSPQTVEDTEKTKEERTKASDAVEDVYVYNRETGQNRVALIQSLFA
                     YVNEVNAEAQEKDTKNKEKAKKENKPAPAPTSTEDKLKNLKDKLSSNVSEKITSNISD
                     EVFTTLIEAKSKDFNVMEDVVTTEVEKSMENKIRDENLNSVKIRARDDIELSAIPAYY
                     KNVSKALVSYAIVPNEVYDEEQTDARRKEAAQSVVPVKILQGQVIVQEGQIVDRETYR
                     QLKMLHLLDQKMPVKQYAGFAIFIIALAAILFLYTKKQTQPKAKKMQTMLIFSSVYLV
                     SLFMLLIILFLETQNIANIAFLFPAAFAPMILKILLNEKYAFLSVIFIAVTSLLTFQN
                     DATSGITIFILLSGATSVVVLRDYSRRSAIMLSGFMVGLINMVYVLLLLLINNSTLLQ
                     VSTLMAIGYAFLGGFGAFILGVGVIPLFETIFGLLTTSRLVELANPNHPLLKKILMKA
                     PGTYHHSMMVANLAEACADKIGANSLLVRVGCFYHDIGKTLRPPYFVENQLQGINPHD
                     RLTPEQSRDIILSHTKDGAEILKENHMPQPIIDIALQHHGTTLLKYFYFKAKETNPDV
                     KEADYRYSGPKPQTKEIAIINISDSVEAAVRSSTEPTMAKITEIIDGIIKDRFLDGQF
                     TECDITIQEIKIIRDTLIATLNGIYHQRIQYPDDKD"
     gene            15716..16201
                     /gene="ybeY"
                     /locus_tag="IBJ56_000871"
     CDS             15716..16201
                     /gene="ybeY"
                     /locus_tag="IBJ56_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HAM3417134.1"
                     /translation="MTVLEIDLLDETKNLLDEDKQLVENILQFAAEYLKIEQGTELSL
                     TFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIIS
                     TEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE
                     R"
     gene            16179..16574
                     /locus_tag="IBJ56_000872"
     CDS             16179..16574
                     /locus_tag="IBJ56_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HAM3417135.1"
                     /translation="MLMDLKDRKYKRSKNYAESFHHAFTGLKTAFLEERNMRFHTFAA
                     LAVVICGFFFHVTKSEWILLILSIFGVLTLEMVNTAIERAVDVATEQYIDEAKKAKDV
                     AAGAVLLAAIVASFIGLIIFIPYFCQMFL"
     gene            16599..16994
                     /locus_tag="IBJ56_000873"
     CDS             16599..16994
                     /locus_tag="IBJ56_000873"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HAM3417136.1"
                     /translation="MKENNFISLAKQAREFAYVPYSKFPVGAALVTKDDEVVLGCNIE
                     NASFGLTNCAERTAIFKAVSEGKRDFKQLVVVADTDGPVSPCGACRQVISEFCAPDMP
                     VILTNLTGKTATVTVKELLPGAFTSEDML"
     gene            16991..17896
                     /locus_tag="IBJ56_000874"
     CDS             16991..17896
                     /locus_tag="IBJ56_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HAM3417137.1"
                     /translation="MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRN
                     KVQGVYTTDESQIIFIDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGR
                     GDEFIIEKLKNVQTPVFLLINKIDLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNV
                     PNLLEQTNANLEIGPMYYPKDQITDHPERFIISELIREQVLQLTREEVPHSVAVVIEG
                     IEKNPKTEKLTINATIIVERSTQKGIIIGKQGQMLKQIGMGARKEIERLLGSKVFLEI
                     WVKVQKNWRDKEHYLQDYGFDREEY"
     gene            complement(17943..18572)
                     /locus_tag="IBJ56_000875"
     CDS             complement(17943..18572)
                     /locus_tag="IBJ56_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4352 domain-containing protein"
                     /protein_id="HAM3417138.1"
                     /translation="MGMLLILLVSLFILTFIGVVVGIILLIVRKEKWAGIIVAGLSVG
                     IGFLVLAAGLNITTIKLFEGFNNPLSIHNYNSSNEPFTNDYAEDYDEDYYDDYIDVSY
                     GESVEIENNSTVTIYKPELTQMKEGYDIYKVKVKYANTSSDPISFYSEDIALYDNADD
                     DYGQQITEEGFAGEIQPGETKELTLYYEVYNLGPYDVEYDNYSWTTNKE"
BASE COUNT         6555 a         3214 c         3731 g         5175 t
ORIGIN      
        1 ttaaatttat acgtaattaa taaagaagtc attgaatgtt aagcgttcta ctgatataat
       61 caaggatagc ttgccatcgg atttatgcga tgagttctaa tcaggagctg gggaaatgaa
      121 caaagaagaa atgaatgcaa gacaaaagaa aattagaaac ttttcgatta tcgcgcacat
      181 agatcatggt aaatctacac tcgctgatcg gattttagaa caaacgggtg ctttgacgca
      241 tcgtgaaatg aaaaatcagc tactagattc gatggattta gaacgtgaac gcgggataac
      301 cataaaatta aatgctgtac aattaaaata taaagcaaaa gatggagaaa catatatctt
      361 ccatctgatt gatacgcctg ggcatgtcga tttcacctat gaagtatcaa gaagtttagc
      421 tgcatgtgag ggagcaatcc ttgttgtaga tgctgcgcaa ggaattgaag cacaaaccct
      481 tgctaatgtt tatttagcac tagacaacga tttagaaatt ttaccagtca ttaacaaaat
      541 cgatttacca gcggccgatc cggaaagagt ccgcgaagaa attgaagatg taattggttt
      601 agatgcttct gacgctgtac ttgcttctgc gaaatctggt attggtattg aagacattct
      661 agaacaaatt gtcgaaaaag ttcctgagcc atctggtgat gtaaataaac cactaaaagc
      721 gctcattttt gactctgttt ttgatgcata tcgtggtgtt attgctaata tccgtatcat
      781 ggatggtgtt gtaaaagcag gcgaccgaat taaaatgatg tccaatggca aagaattcga
      841 agtaacggag gttggtgtat tctcaccaaa ggcaacacca cgtgacgaat tacttgttgg
      901 tgacgttggt tacttaacag cagctataaa aaatgttgga gatacgcgcg taggtgatac
      961 aatcacactt gcgaataatc cagctgaaga agcgctggat ggttaccgta aattaaatcc
     1021 aatggtttat tgtggtctat atccaatcga ctcctctaaa tataatgatc ttcgtgatgc
     1081 tttagaaaaa ctagaattaa atgactctgc tttgcaattt gaagcggaaa cttctcaagc
     1141 attaggtttt ggtttccgtt gtggtttctt aggattacta catatggaaa ttattcaaga
     1201 gcgaatcgaa cgtgaattta acattgattt aattaccact gctccaagtg ttatctatca
     1261 tgtcaacttg acagatggtt ctaacattgt ggttgataat cctgctgaaa tgccagaacc
     1321 tggtgttatt gaaagcgtgg aagagccata tgtaaaagca actgtgatgg ttccaaatga
     1381 ttatgttggt gcagtgatgg aactggcaca aaacaaacgt ggaaacttca ttacgatgga
     1441 gtacttagat gatattcgcg taagtattgt gtacgaaatt ccattatccg aaatcgtata
     1501 tgactttttt gaccaattaa aatcatctac aaaaggttat gcgtcctttg attatgaatt
     1561 aattggctat aaagcttcta aacttgtgaa aatggatatt cttttaaatg cagaaaaagt
     1621 tgatgcactt agctttatcg ttcaccgtga ttttgcttat gagcgtggaa aaatcatcgt
     1681 ggagaaatta aaagaactta ttccaagaca acaatttgaa gtacctattc aagcagcaat
     1741 tgccacaaaa attgtttctc gttctactat taaagcgttg cgaaaaaacg tacttgctaa
     1801 atgttacggt ggggacgtat ctcgtaaacg aaaactttta gagaaacaaa aagaaggtaa
     1861 aaaacgaatg aaacaaatcg gttcagttga agtcccgcaa gaagcattta tggcaatctt
     1921 gaaaatggac gaatccaaat aataaaaaag ttgtgctgtg aacagaaatg ttcacggcac
     1981 aactttttta tatattatac ggataaatca aatcatgctt tttcttttcc atactgacat
     2041 aatttctctc ggcagtaatg atttctaccg catcaggaga cgaatacttc gctattttaa
     2101 catcgacttc ttttaggttt tctgttaaat cttctaaact ttttaaaacg gcggcccgat
     2161 gatccaagag caactgttta cgcgcttcaa tagaaacggg gccttccata caataatcaa
     2221 tatatgtgcg gatttgcttt agtggcattc ctgtattttt caagcaacaa atcgtatgaa
     2281 ttaaatttaa gtctgattcc gtaaactcac ggtagccgga ttggttttta gaaacaaacg
     2341 gcaataaacc ttgcttatca tagtaacgca atgtataaat cgacaaatta aatattttgg
     2401 acacttcttt aatagaataa gtcatttctt cctccaataa ataatttact tgccctacac
     2461 tatactctag ggtttaaagt aagtataaag ttaataaaga aaataagcaa aattaactac
     2521 tattggagga attcacgatg aaaaataacg tattagtaac aggcggaact ggatttttag
     2581 gaatgcatat tatctttcaa ttattgcaac aaggctatca agtcaaaaca accgtacgct
     2641 ctttaaaaag caaagaaaaa gtaatagaag tactgcaaaa taatggaata acggatttta
     2701 cgcaattatc ctttgtcgaa cttgatttat ccaaagatga aggatggaaa gaagcaatgc
     2761 tcgattgtaa atatgtgcta agtgtcgcat ctccagtatt tttcggtaaa tttaaaaatg
     2821 aagaagaatt aatacgccca gcaatagaag gtattacaag aattttacag gccgcaaaag
     2881 aggcaaaagt aaaacgagta gttatgactt cgaattttgg cgctattggt tttagcaacg
     2941 cagataaaaa tagcattaca acagaagcat attggaccga tgaactcgct aagggtttgt
     3001 cagcatatga aaaatctaaa ctaattgcag aaaaagaagc ttggaaattc atggaaaatg
     3061 aaacagaatt ggaatttgct accatcaatc cggttgccat ttttggtcca tcacaaagca
     3121 gtcatgtctc cggaagcttt gacttattaa aaaatctgtt aaatggttct atgaaacgta
     3181 tcataaatat tccgttaaac gtagtagatg cacgagatgt tgccgattta catattcgcg
     3241 caatgattac tcctgaagca aacggagaac gttttattgc ttcagctgac ggagaaatta
     3301 gtatggcaga tatcgcacat ttgcttcaac gagagcgtcc tgaactagtg agtaaaatgc
     3361 cgaaaaaaac attgccaaat gccgctataa gagcagctgc tatatttagt aaacacgcca
     3421 aagaaggcga gttgatgatt aatatgaatc ggcaaataag caattcaaaa gcgagagatc
     3481 ttttaggatg gcagccgatt tcgacaaaag aagaagccgt tcttgctgca gtggatagtt
     3541 tggcaaagta tggtttatta gattaaaagc gaatcctgca ccaaagcact ggaaaatatg
     3601 ttaaactgac taatggacaa cgaagcaaat tttaagtgca aggaattgat aaaaatgata
     3661 aatacgaacc aatcgagtaa ggaaagttcc gcggtatata tccatattcc gttttgcgaa
     3721 catatttgct attactgcga ttttaataaa gtattcttag aaggacaacc ggtcgacgaa
     3781 tacgtagatt tactaattaa agaaatggaa ttaactgctg caaaaggacc tattgcgcca
     3841 gtcgacactg tatttgttgg tgggggaacg cctacaaccc tgaacgaagc gcaaattgcg
     3901 agactttgca cagccatcca taacattcta ccgctcaaaa aagatatcga attttccttt
     3961 gaagccaacc caggagatct ttcgctatct aaattacaag ccatgcaaga tcatggcgtt
     4021 aatcgtatca gtatgggagt tcaaagcttc aacaatgaac ttctcaaaaa aattgggcgc
     4081 attcatactg taaaagatgt ttatcaatct gtggaaaata tgcgcaaaat cggatttgaa
     4141 aatgtaagta ttgatttaat ctttagcttg cctggtcaaa cagaagcaga tttccaagat
     4201 acattaaaac aagcgcttga ccttgattta ccgcattact ccgcctattc attaatcatc
     4261 gaaccaaaaa cgatttttta taaccttatg caaaaaggaa agcttttctt acctggtcaa
     4321 gatgccgagg caaatatgta cgatttactt ctcaacgaaa tggaaaagca cggtcgtaaa
     4381 caatatgaaa ttagtaattt tgccaaagaa ggatttcaga gtaaacacaa tatcacttat
     4441 tggagcaatg aacattacta cggatttggc gccggagcac atggctatgt tggcaataca
     4501 cgttatagta atttcggacc aatcaaaaaa tacatggaac cactccaaaa aaatatactc
     4561 ccaacattcc aacaaaaaga gcttacatta aaagaaaaaa tggaagaaga aatgttttta
     4621 gggcttagaa aagtggacgg cgtggataaa aaacatttca aacaaaaatt cggccaagat
     4681 ttagatgcaa catttgcgaa tgctattcaa aaaacaaccg caaaaggctg gctcgaaaat
     4741 aacgaagaaa atgtggcact tacaagaagt ggaagatttt taggaaataa tgtttttcaa
     4801 gaatttctct aaaaccgcac tatttgacct tttttgacca aacaatccaa ctttagtctg
     4861 aaatcgagtg ttttcggttg actaaggtgg aattgtttgg taaatttata cttgtattta
     4921 gcacttgacg ttatggagtg ctaaaagagg tgattgctat gttaacagaa agacaacttt
     4981 tgatttttcg tgccatcatc gatcatttca cttggactat tcagccagtt ggatcaaaga
     5041 atttgctgaa agaaaaaggt ttgccttata gttccgcgac tatccgtaat gaaatgggcg
     5101 ttctcgaaga atacggtttt attgaaaaga cgcattcctc atcgggacga gttccatcag
     5161 agaaaggata tcgcttctat gtcgattatt tactccagcc caaaaagcta gataaatccg
     5221 acaggcaaat gattcgttcc ttcttttcag agaactacta cgaaatggaa ggacttatcc
     5281 aaaattcagc attaatgtta tccgatttaa ccaattacac gtccattttg cttggtcctg
     5341 aagcgacgaa aaatcattta agtggcttta ggtttgtacc aataaataat tttcaagcaa
     5401 tgctcatatt aattaccgat caagggcatg ttgataacca tttggtgaca ataccagaag
     5461 gcacaacgct ctccgatatt gaacgtatgg tcaacattct aaatgaacgg ttagtaggac
     5521 tttcgcttga tgatttaaaa gtacaaatac ccatggaagt aaaggaatta cttgggaagc
     5581 atgttagaaa ttacgaaagc tttatgcatg tgttttccga ttcttttgct caagcaagtc
     5641 aacaaaaagt gtattttggc ggaaaaacga atattttaaa tcaaccggaa tttcatgaca
     5701 ttaataaagt ccgtgagatg cttcatttga tggaagaaga acaagatgtg tatgaattgt
     5761 ttagggatat tcccgatggt cttcaagtga aaattggccg agaaaacaat aatagtctaa
     5821 tggaagattg tagtatcatt acagcaacat ataatattgc tggcgaacgc gttggcggta
     5881 ttgtactcct aggacccaca agaatggaat atagcagaat gatgggactc gttgatgtga
     5941 tgagccgaga tttaaccgat gtgttaacca aactttatcg tgataaccaa aattaggaag
     6001 gctgaaaaag cacacgtttt ttcaggaggt ggctaaagtg tctgagaaaa agaacaaaaa
     6061 agaaagacta gctgatgaaa tcgaacaaga agaattaaac attctagatg aaacagaaga
     6121 aactgttgaa gaagaggctg cggctgacac tttaacagaa gaacaagcaa aaattttaga
     6181 gcttgaaaac aaacttgatg aagtagaaaa tcgctacctt cgcatgcaag cggacttcga
     6241 aaatgtgaag aaaagacata tcgcagaccg tgatgccagt cagaaatatc gttcgcagag
     6301 cctagcgcaa gatttacttc ccgcactaga cagttttgaa aaagcacttg caacgacttc
     6361 tgatcaggaa gaagtgaaac aaattttaaa aggaatggaa atggtataca accaaatcct
     6421 tgttgctttt gaaaaagaag gtattgaagt cattccagct gtcggcgaac aatttgaccc
     6481 gaacttccat caagccgtaa tgcaagatag tgatgaaaat gcaggaagca atgaaatcac
     6541 tgcggaactt caaaaaggtt ataaacttaa agatcgggtt atacgcccat ctatggtaaa
     6601 agtaaatcaa taaaaaataa ttactgaata acaggaggaa ataacaatga gcaaaattat
     6661 cggaattgac ttaggaacaa caaactctgc agtagcagta ttagaaggcg gagaagcaaa
     6721 aatcatccct aacccagaag gcgcacgtac aacaccttct gtcgttggtt tcaaaaatgg
     6781 cgaacgccaa gttggtgaag tagcgaaacg tgctgctatt acaaacccaa atacaattag
     6841 ttctattaaa cgtcacatgg gtactaacta taaagaaaca atcgaaggaa aagattactc
     6901 accacaagaa atcagtgcaa tcattttaca atatctaaaa agctacgcag aagactatct
     6961 tggtgaaact gtagataaag ctgttattac agttccagct tacttcaacg atgcgcaacg
     7021 tcaagcaaca aaagatgctg gtaaaatcgc tggtcttgaa gtggaacgta ttattaacga
     7081 accaacagca gcagctcttg cttacggtat ggataaaaca gaaacagacc aaacaatcct
     7141 agtatttgac cttggtggtg gtacatttga cgtatctatc cttgaattag gtgacggcgt
     7201 attcgaagta cattctactg ccggcgacaa cgaattaggt ggagatgact tcgataaaaa
     7261 aatcatcgac tatttagtag cagaattcaa aaaagataat ggtattgact taagccaaga
     7321 taaaatggcg cttcaacgtt tgaaagatgc tgctgaaaaa gcgaaaaaag atctttctgg
     7381 cgtaacaagc acacaaatct ccttaccatt tatcacagct ggagaagctg gtccacttca
     7441 cttagaagta acccttactc gtgctaaatt tgatgaatta acacatgact tagttgaacg
     7501 tactattgcg ccaactcgtc aagcattaaa agatgcaaac ttgtctgcaa gcgatattga
     7561 ccaagtaatt ctagttggtg gatctactcg tattcctgca gttcaagaaa caatcaaaaa
     7621 agaattaggc aaagaacctc ataaaggtgt aaacccagat gaagttgtag caatgggtgc
     7681 tgcaattcaa ggtggcgtaa tcactggtga tgtaaaagac gttgtactac ttgacgtaac
     7741 tccattatcc cttggtattg aaacaatggg tggcgttatg actacactta tcgaacgtaa
     7801 tacaactatc ccaacatcta aatcacaaac tttctctaca gcagctgaca accaaccagc
     7861 cgtagatatc catgtacttc aaggtgaacg tccaatggca aaagacaaca aaacattagg
     7921 tcgtttccaa ttagcggata ttccaccagc tccacgcgga attccacaaa tcgaagtatc
     7981 ttttgatatc gacaaaaatg gtatcgtaac agttcgtgca aaagatcttg gaactggtaa
     8041 agaacaaaac atcgttatca aatcttcttc aggtttaaca gacgaagaaa ttgagaaaat
     8101 ggttcaagat gctgaagcta acgctgaaga agataaaaag aacaaagaaa acgctgaact
     8161 tcgcaacaat gcagaccaat tagtattcac tgtagataaa actttgaaag agttagaagg
     8221 caaagtggaa gaagaagaag tgaaaaaagc agaagcagct cgcgatgaac tacaagaagc
     8281 gcttaaaggt gaagattttg aagctatcaa agaaaaaaca gaaagcttaa acgaaatcgt
     8341 tcaaaaccta tctgttaaat tatacgaaca agctgcagca gaacaacaag cagctggcgg
     8401 tgcagaaggt caagaggctc ctcaaaatga cgacgtagta gacgctgaat ttgaagaagt
     8461 aaatgacgac gacaaagaaa acaaataatc ttttttaaag taaagataat gagtcaaagt
     8521 ctactgtggc tttgactttt tatctgaaat aaagttttta caacatctct ttcaaatgtt
     8581 acaatacgtt aggactataa aaatctatca tggacaggag tgatggcgga tggcaaaacg
     8641 agattactat gaagtgcttg gtgtttccaa aagcgcctca gcggacgaaa taaaaaaagc
     8701 ttaccggaaa ctgtccaaac agtatcatcc ggacataaat aaagaagcag gcgctgatga
     8761 aaaatttaaa gaaatatcag aggcatatga agcattaagt gacccacaaa aacgtgcgca
     8821 atatgatcaa tatggacacg tagatccaaa ccaaggcttc ggcggcggtg ctggtggcgg
     8881 atttagcggt ggaggattct ctggatttga agatatcttt gacacattct ttggtggcgg
     8941 tggacgtcaa caagatccaa atgccccaag acaaggtagc gatttacaat atactatgcg
     9001 ccttaaattc aaagaagcta tttttggtaa agatgcagaa atcgaaattc ctcgcgaaga
     9061 aaactgtgac acatgtcatg gttccggtgc aaaaccaggg acaacacctg aaaaatgtag
     9121 ccattgtggt ggtaaaggtt ccattaacgt ggaacaaaat accccatttg gtcgtgtagt
     9181 taacaagcgg acatgtcaat actgtaatgg tactggtaaa gaaatcaaag aaaaatgccc
     9241 aacttgtcac ggtaaaggcc gtgtaactaa aacgaaaaaa atcaaagtga aagttccagc
     9301 tggcgtgaac gacgggcaac aaatgcgcgt atctggtgaa ggagaagccg gcattaacgg
     9361 cggacctaac ggcgatttat atgtggtatt tgtcgtaatt ccagatgagt ttttcgaacg
     9421 cgaagcagat gatatttacg tagaagtccc aatcacattc gtacaagcta cattaggtga
     9481 cgaaattgat gttccaactg ttcacggcaa agttcgtttg aaaattccaa gtggtactca
     9541 aacaggaaca actttccgct tacgtggtaa aggtgtgcca catcttcgag gaaatggaac
     9601 tggcgatcaa catgtaatcg tcaaagtcat tgttccgaaa aaactagatg ataaacaaaa
     9661 agaaatcttg cgagaatttg cttccactac tggagacaaa gtagacgaac aaacatccgg
     9721 attttttgac aaaatgaaac gagcttttaa aggcgattga tgaacgtaga ggtcgatagt
     9781 tgtgcgagaa gcaaccatcg accttttcta catacaaaag gagtgttaaa aatggaatgg
     9841 tcagaagtag aagtccatac aacaaacgaa gctgtagaac cagtagctaa tgttttgaca
     9901 gaatttggtg cagcaggagt atccattgaa gatgttgctg attttttacg tgaacgagaa
     9961 gacaaatttg gagaaatata tgcactaaga cgagaagatt atccagaaga cggcgttatt
    10021 attaaagctt acttcttaaa gacaacagaa tttgtagagc aaattccaga aattgaacaa
    10081 acattgaaga atctgtctac ttttgatatt ccgctaggta atttccaatt tgtcgttaat
    10141 gatgtggacg acgaggagtg ggctaccgca tggaagaagt attatcatcc agttcaaatc
    10201 actgacagga tcacgattgt accaagttgg gaatcataca ccccatctgc taacgaaata
    10261 atcattgagc tagatccagg aatggctttt gggacaggaa cacatccgac aactcagcta
    10321 tgtatccgcg cactgagcga ttatttacaa ccaggagatg aagtgattga tgttgggact
    10381 ggttctggcg tcttaagtat tgccagtgct aaattaggtg caaaatctat tttagcaaca
    10441 gaccttgacg aaatcgccac tcgtgcagca gaagaaaata ttactttaaa taaaactgaa
    10501 cacattatta ctgtcaaaca aaataatcta cttcaagata ttaataaaac agacgtggat
    10561 attgttgttg cgaacatttt agcagaagtt attttgcttt tccctgagga tgtttataga
    10621 gcactcaaac caggcggaat tttcattgct tccgggatta ttgaagacaa agcgaaagta
    10681 gtcgaagaag cacttaaaaa ggctgggctt gttattgaaa aaatggagca caaggggact
    10741 gggttgcgat tatttccaaa cgaggagtgg aataaatgca acgttatttt gtaacaaatg
    10801 agctagagaa tgataacgaa acactatcca ttactggaga aaacttccat catattactc
    10861 gtgttatgcg aatgaaagaa tccgaccaag ttttcattgt ttttcctagc aaaaaaacat
    10921 gtattgccgc tattacagct ataaacgatg atgaagtatt tttaaattta gtgaaatggc
    10981 tagaagaaga taccgaattg cctatagaaa tcaccatcgc aagtggtcta ccaaaaggcg
    11041 acaaactaga actcatcatt caaaaaagta cagaactagg cgcacacaaa tttatccctt
    11101 ataaagcaga acgatctgtg gtgaaatggg atgacaagaa agtcatcaaa aaaatcgagc
    11161 gacttcaaaa aattgcgcaa gaagctgctg aacaatcgca ccggacaatc attccagaag
    11221 ttcattatgc tgctagtttc aaagagttaa tgtttgacca tgttcactat gactttgtta
    11281 tcgcagcata tgaagagagc gccagagaag gtgaggacag cgcgcttgct aacttattcc
    11341 aaaccatgaa gcctggacag tctgttttat gtgtttttgg gcctgaagga ggcattagcg
    11401 aaaaagagct aatgcaactt caagaagtaa atgcaaaact cgcaggactc ggcccgagaa
    11461 tattaagaac agaaaccgca ccactctatt gtttatccgc tgcttctttc tattttgatc
    11521 tttataaaaa caaaaaagaa taacatttca aagttttatg cgaaagttaa cgatttcatg
    11581 ttgacgatgc ccgatgtttc gtatataatt tttaatgagt gaatgcttat ctgcattact
    11641 tcagaataat tcataattta ttttccgtta tgtcctattc tggaacttaa atgaaggatt
    11701 taagtgagtg catgtaagtg ccggagggag ggaaagagag atgtcaaaaa cagtagttcg
    11761 taaaaacgaa tcgcttgaag atgctcttcg tcgctttaaa cgtactgttt ccaaaagtgg
    11821 aactttgcaa gaatccagaa agcgcgaatt ttatgaaaaa ccaagcgtaa aacgtaagaa
    11881 aaaatccgaa gcagcaagaa aacgcaaatt ctaattaaaa ggcgatgatt tcgttgacac
    11941 tgcttgacaa gttaaatgaa gatatgaaac aagcgatgcg cgataaagag aaagaaaaac
    12001 tttccgttat tcgtatgtta aaagcagctt tacaaaacga agcaattcac caaggtgtga
    12061 aagatcttac tccggatgat gaagtaaccg tgatttcccg cgaactcaaa caacgcagag
    12121 attctctagc agagtttgac aaagctggac gtaacgacct ttctgataaa gtccgttccg
    12181 agattgtcat tgttgaggac tacgcgccaa aacaattgac tcctgaagag cttgagaata
    12241 ttgtgaaagc aactatcgaa gaagttggcg catctagtaa agctgatttc ggcaaagtaa
    12301 tgtccgcgat tatgcctaaa gtaaatggta aagctgacgg tggtgctgtt aaccaattcg
    12361 taaaaaaata tctttcataa actaattcaa actagttttg aaacattaag aaacaggatt
    12421 acttcctatt ttgtggagga aatcctgttt ttttatgccg atttttactt gaattgcgtt
    12481 gttgctatcg cttcgttttt caagcaaggc aatttcgtgt ataatataac taatcaaggc
    12541 acttataaca ggtgaagggg ttagccaatg ctaaatgaat ttaatgaagt agtcgaatta
    12601 tctgatgaca caaatattca agatttattc ggcaataata ataagaatat cgaactttta
    12661 gaagagttac ttcaagtgaa aatcattact cggggagagt cactatctat tacaggcgag
    12721 gaagagcctg tacagcatac gactgccgtt ttaaatgaac ttattttgac ggtaaaacga
    12781 ggtattcata ttgatggtcg agatatcgct caagcggtaa aaatgcaaag aaacggaaca
    12841 cttatttact ttcatacctt atttgaagaa gaaattacga agaatgcaaa aggaatgcca
    12901 attaggccaa aaacattcgg acaaagaact tatattcaaa tgattaaaaa acatgacatc
    12961 gttttcggcg ttggtccagc aggtactggt aaaacctatc tagcagtagt tatggcagta
    13021 gatgcatgga aaaaaggaaa tgtgagcaaa atcattttaa caagacctgc cgttgaagct
    13081 ggcgaaagtt taggtttttt gcctggagat ctaaaagaaa aagtagatcc ttatctacgc
    13141 cctgtgtacg acgcgttata tgacattttt ggtacagagc atacaacaag gttaatggac
    13201 cgaggcgtca ttgaaatagc tcctctggct tatatgcgtg gccgtacact tgatcatgcc
    13261 tttgtcattt tagacgaggc gcagaatacg accattgccc aaatgaaaat gtttttaaca
    13321 cgacttggtt atgactccaa aatgattgtc aatggagata tgacacaaat tgacttacca
    13381 aaaggtgcaa ctagcggtct tgtcaatgca gaacaagttt taaaagatgt aaaagatatc
    13441 ggttttgttt actttgaaca tcatgatgta gtcagacacc cactcgttgc tgaaattatt
    13501 aaagcttatg aagggaaaca aaattagaga ggagacaaag atgtgaaact agccaagaaa
    13561 tggagagatt ggtacatcga aagtggaaag aaataccttt ttccgctgct ccttgtttgc
    13621 tttgcagttg tagcttattt tctcgtttgc caaatgacga aaccggaatc ttacaatgtt
    13681 aaactattcc aggtggctga aaaaacaatt cgttcacctc aaacggtgga agatacagaa
    13741 aaaacaaaag aagaaagaac caaagcaagc gatgctgtag aagatgtgta tgtctacaat
    13801 cgcgaaactg gtcaaaaccg agtagcactt atccaaagtt tatttgccta tgtaaatgaa
    13861 gtaaacgcag aagcgcaaga aaaagatacc aagaataaag agaaagcaaa aaaagagaat
    13921 aagcctgctc ctgcgccaac atcaactgaa gataaattaa aaaacttaaa agacaaatta
    13981 tctagtaacg tatctgaaaa aataacttct aacatatctg acgaagtttt cactacttta
    14041 atcgaagcga aaagtaaaga ttttaatgtc atggaagacg tggttacaac agaagttgaa
    14101 aaatccatgg aaaataaaat ccgagatgaa aacttgaatt ctgtaaaaat tagagctcgt
    14161 gatgatattg aactttcagc gatacccgct tactacaaaa atgtctcaaa agccttagtt
    14221 tcctatgcta tcgtaccgaa tgaagtttac gatgaagagc agaccgatgc acgacgtaaa
    14281 gaagctgcgc aatccgttgt tcctgtgaaa atcttacaag ggcaagttat tgttcaagaa
    14341 ggccaaattg tagatagaga aacatatcgt cagctaaaaa tgctacattt acttgatcaa
    14401 aaaatgcctg taaaacaata cgctggattt gcgattttca ttattgcttt agcagcaatt
    14461 ctattccttt acacgaaaaa acaaacacaa cctaaagcga aaaaaatgca gacgatgctt
    14521 attttttctt cggtttatct tgtttctttg tttatgttat taattatttt atttttagaa
    14581 acgcaaaata tcgcgaatat tgctttctta ttcccagccg cctttgcccc gatgatactc
    14641 aaaattttac tcaatgagaa atatgccttt ttaagcgtca tttttattgc tgtaactagt
    14701 ttgttaacat ttcaaaatga tgctacaagc ggcataacta tttttatttt attgagtggc
    14761 gcgacgagtg ttgttgtgtt acgcgattat agtagacgtt cggctattat gttgtctggg
    14821 tttatggttg gtttaattaa tatggtttat gtgttacttt tattattaat aaataacagc
    14881 acactgttgc aagtttctac actaatggcc attggatatg cctttttagg tggatttggc
    14941 gcatttattc tcggagtagg agttattccg ttattcgaaa cgatttttgg attgttaaca
    15001 acgagtcgtt tggtcgaatt agctaatcca aaccatccat tattgaagaa aatattaatg
    15061 aaagctcctg gtacgtatca tcatagtatg atggtagcta acttagcaga agcatgcgct
    15121 gacaaaattg gtgccaatag tttacttgtt cgtgttggct gtttttatca tgatatagga
    15181 aaaacattaa gaccacctta ttttgtggaa aatcaattgc aaggaataaa tccgcacgat
    15241 agactgacac cagaacaaag tcgtgatata attctttcgc atacaaaaga cggagcagag
    15301 attttaaaag aaaatcatat gccacaacca attattgata tcgcactcca acatcacggg
    15361 acgacactgc ttaaatattt ctattttaaa gcgaaagaaa caaatccaga tgtgaaagag
    15421 gcagattatc gttacagtgg tccaaagcca caaacgaaag aaatcgccat tatcaatata
    15481 tcggatagtg ttgaagcggc agttcgttct tccacagagc caaccatggc aaaaataaca
    15541 gaaattattg acggaatcat taaagatcgt ttccttgatg ggcaatttac agaatgtgat
    15601 attacaatac aagaaattaa aatcattcgt gacaccttaa tcgccacatt aaatggaata
    15661 tatcatcaac gaattcaata tcctgatgac aaagattgaa ataggaggac aaaagatgac
    15721 ggtcttagaa attgatttac tagacgaaac caagaattta cttgatgaag ataaacagct
    15781 agttgaaaat attttacaat ttgcggctga gtatttaaaa atcgaacaag ggacagagct
    15841 gtcactcacc tttacaacga atgaaggtat tcgtgagatt aaccgagaat atcgggataa
    15901 agatcaagca accgatgtta tttcgttcgc gctagaagaa atgggcgacg gggaaacgga
    15961 gattgattgg ggcgaatttg atcttgaaac gcctcgtatg cttggcgata taattatttc
    16021 gactgaaaaa gcagaagagc aagccaaaga ttacggacat acaaaagcaa gagaattagg
    16081 tttcttagca gttcatggat tgctgcactt gcttgggtat gatcatatgg agcctgacga
    16141 agagaaaatc atgtttggct tacaaaaaga agtgttggat gcttatggac ttgaaagata
    16201 gaaaatacaa acgtagtaaa aattatgcag aatcttttca tcatgctttt actggactaa
    16261 aaactgcttt tttagaagaa cgtaatatga gatttcatac tttcgcagcg cttgctgttg
    16321 tcatctgtgg ctttttcttt catgtaacta aatctgagtg gattttatta atcctttcta
    16381 tttttggtgt gttaacgcta gagatggtga acacagcgat tgaacgagcg gtagatgtgg
    16441 cgacagaaca atacattgat gaggcgaaaa aagcgaagga tgtagctgcc ggagcggtac
    16501 tgttagcagc aattgtagca agttttattg gactgattat attcatacca tacttttgcc
    16561 agatgttttt ataaaaagaa gggattgtga cttggtaaat gaaagaaaat aattttatct
    16621 cactcgctaa acaagcaaga gaatttgcgt atgttcctta ctcgaaattt ccagtaggag
    16681 cagctcttgt tacgaaagat gacgaggttg tacttggctg taatatcgag aatgcatcat
    16741 tcggtttaac aaactgcgca gaacggacag ctatttttaa agctgtatca gaaggaaaac
    16801 gagattttaa acagttagtt gtcgtagcgg atacagacgg tccagtttcg ccgtgtgggg
    16861 catgcagaca agtcatcagt gaattttgtg cgccagatat gccagtaata ttaacaaact
    16921 taacagggaa aacagcgacg gtaacggtga aagaactttt accaggcgca ttcacatcgg
    16981 aggatatgtt atgagtgaac catttaaatc aggatttgta gctatagttg ggcggcctaa
    17041 cgttgggaaa tcaactttat taaatcacat cattggccaa aaaattgcca ttatgagtga
    17101 taaagctcaa acaacaagaa ataaagtaca aggtgtttat acaacagatg aatcacaaat
    17161 tatttttatt gatacaccag gtatacataa accaaagcat aaattaggcg atttcatggt
    17221 gaagattgcg ctaaatacgt tccaagaagt agacttaatt tatttcgtaa tcgacgcatc
    17281 taccggattt ggacgcggag atgaatttat tattgaaaaa cttaaaaacg tacaaacacc
    17341 tgtttttctt ttgattaata agattgattt aattgctcca gaagatttat tcaagttaat
    17401 tgaacagtac cgcgatttga tggactttga tgagattatt cctatttcag cacttcaagg
    17461 aaataacgtg cctaacttac tagaacaaac gaatgctaac ttagaaatcg gaccaatgta
    17521 ttatccaaaa gatcaaatca cggaccatcc tgagcgtttc atcatctcgg agttaattcg
    17581 tgaacaggtt ttacaattaa cacgagaaga agttccacat tctgtagcag tggttattga
    17641 aggaattgaa aaaaacccta aaacagaaaa acttacaatc aatgctacaa ttattgtaga
    17701 aagaagcacg caaaaaggaa ttattattgg taaacaaggt caaatgctaa aacaaattgg
    17761 tatgggtgct agaaaagaaa ttgaacgctt actcggctcc aaagtcttct tagaaatttg
    17821 ggtaaaagtt caaaaaaact ggcgcgataa agagcattat ttgcaagatt acggtttcga
    17881 ccgcgaagag tattaaaaaa gcatctggcg cacaattggg tttgtgcacc agatgctttt
    17941 aattattctt tatttgtagt ccagctatag ttatcatatt ctacatcata tggtccaagg
    18001 ttatacactt catagtaaag cgttaattct tttgtctccc ctggttgaat ttctccagca
    18061 aaaccttctt ccgtaatttg ttggccataa tcatcgtctg cattatcata aagcgcaatg
    18121 tcttcggaat agaagcttat tggatcagaa cttgtatttg cgtatttcac ttttacttta
    18181 taaatatcat agccttcctt catttgggtc agctcaggtt tataaatggt aactgtgcta
    18241 ttgttttcta tctcaacaga ttctccgtaa cttacgtcta tgtagtcgtc atagtaatct
    18301 tcatcatagt cttctgcata atcatttgta aatggttcat tgctcgaatt gtaattatga
    18361 atagaaagtg gattattaaa tccttcaaat aatttaatcg ttgttatatt aagtccagct
    18421 gctaatacta aaaagccgat tcccacggat aatcccgcaa caataatgcc cgcccatttc
    18481 tcttttctta caataagcaa aataattccc acaacaactc ctatgaatgt gagtataaat
    18541 aagctgacta ataatataag taacataccc aaagtaaaaa atcctctctg acttaccgtt
    18601 ttctctattt tacaataggc atccgtggaa agatagcaaa aaatataaaa agacataatc
    18661 attaagaaaa tgtta
//
LOCUS       DABQVC010000035        18644 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.035,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000035 DABQVC010000000
VERSION     DABQVC010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18644
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.035"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1322
                     /gene="mpl"
                     /locus_tag="IBJ56_000876"
     CDS             <1..1322
                     /gene="mpl"
                     /locus_tag="IBJ56_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc metalloproteinase Mpl"
                     /protein_id="HAM3417139.1"
                     /translation="GVTHYTLALSSDGYLTDNDEIKVHVTPDNKIAFINGDLQQGQLR
                     ITNQIKITEKNAIEKAFEAIGQSEAHVKSYIGNPVKEKEIIINSRTKRLVYNIKLIFA
                     EPEVASWIIQVDAETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKIN
                     DLFYLVDRTHKGLIRTFDLNHKTDASFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYD
                     YYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGREILYGDGDKKNFKPFSCAKTIV
                     GHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGLRDGRIR
                     SIKDPDKYNQAAHMKDYESLPITEEGDWGGVHFNSGIPNKAAYNTITKLGKEKTEQLY
                     FRALKYYLTKKAQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN"
     gene            1522..3441
                     /gene="actA"
                     /locus_tag="IBJ56_000877"
     CDS             1522..3441
                     /gene="actA"
                     /locus_tag="IBJ56_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="actin assembly-inducing protein ActA"
                     /protein_id="HAM3417140.1"
                     /translation="MGLNRFMRAMMVVFITANCITINPDIIFAATDSEDSSLNTDEWE
                     EEKTEEQPSEVNTGPRYETAREVSSRDIEELEKSNKVKNTNKADLIAMLKAKAEKGPN
                     INNNNSEQSENVAINEEASGSDRPAIQVERRHPGLPSDSAAEIKKRRKAIASSDSELE
                     SLTYPDKPTKATKKKVAKASVTDTSESDLDSSMQSADESTPQPLKANQQPFFPKVFKK
                     IKDAGKWVRDKIDENPEVKKAIVDKSAGLIDQLLTKKKNEEVNASDFPPPPTDEELRL
                     ALPETPMLLGFNAPATSEPSSFEFPPPPTDEELRLALPETPMLLGFNAPATSEPSSFE
                     FPPPPTEDELEIMRETAPSLDSSFTSGDLASLRSAINRHSQNFSDFPPMPTEEELNGR
                     GGIPTSEEFSSLNSGDFTDDENSETTEEEIDRLADLRDRGTGKHSRNAGFLPLNPFTS
                     SPVPSLTPKVPKISAPALITDITKKAPFKNPPQPLNVFNKKTTTKTAPKKITPVNTAP
                     KLAALPITKAQETELGENKAPFIEKQAETNNRPIDMPSLPVIQKEVTERNKEEMKPQT
                     EEKVVGESEPANNVNGKKRSAGIEEGKLIAKSAEDEKAKEEPVNHTTLILAMLAIGVF
                     SLGAVIKIIQLRKNS"
     gene            3477..4346
                     /gene="plcB"
                     /locus_tag="IBJ56_000878"
     CDS             3477..4346
                     /gene="plcB"
                     /locus_tag="IBJ56_000878"
                     /EC_number="3.1.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylcholine phospholipase C"
                     /protein_id="HAM3417141.1"
                     /translation="MKFKKVVLGMCLTASVLVFPVTIKASACCDEYLKPPAAPHDIDS
                     KLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVDHMRANLMNELKNFDKQIAQGI
                     YDADHKNPYYDTSTFLSHFYNPDKDNTYLPGFANAKITGAKYFNQSVADYREGKFDTA
                     FYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVVKRF
                     CSNDVKEWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTL
                     AGFLEFWSKKTNE"
     gene            4418..4741
                     /locus_tag="IBJ56_000879"
     CDS             4418..4741
                     /locus_tag="IBJ56_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417142.1"
                     /translation="MYIKGGLIFFFVMFVIALCSVLILLIIKMSVWKEEPFNLSDAKE
                     IECLGSCKIKNTNQKIHFFSIKKNLFEEEGNMAGILNEHERKGADKSIFIVILDDEKG
                     IANEE"
     gene            4874..5335
                     /locus_tag="IBJ56_000880"
     CDS             4874..5335
                     /locus_tag="IBJ56_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HAM3417143.1"
                     /translation="MKMLKKGTTVLFVMIMAVMLVACGDKEETKTYSLSQNGVDSKLT
                     YTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKA
                     IETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK"
     gene            complement(5388..5720)
                     /locus_tag="IBJ56_000881"
     CDS             complement(5388..5720)
                     /locus_tag="IBJ56_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative heavy metal-binding protein"
                     /protein_id="HAM3417144.1"
                     /translation="MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFG
                     GRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTA
                     VVIEAQDY"
     gene            complement(5787..6518)
                     /locus_tag="IBJ56_000882"
     CDS             complement(5787..6518)
                     /locus_tag="IBJ56_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HAM3417145.1"
                     /translation="MRLRMLFLLYLIYSRGVTRTITFDQLNTELQALENPNTIKIFRN
                     HGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVELIESNNSDLIYLGLLAINPDKIT
                     TEQIEKWNIIFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEH
                     INNLPEAEALLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVH
                     VNLGNTACKVPDAISYIEKARNRTK"
     gene            complement(6539..7480)
                     /locus_tag="IBJ56_000883"
     CDS             complement(6539..7480)
                     /locus_tag="IBJ56_000883"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HAM3417146.1"
                     /translation="MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIG
                     DAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKG
                     IVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADY
                     LKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAY
                     EIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQ
                     GVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID"
     gene            7774..8397
                     /locus_tag="IBJ56_000884"
     CDS             7774..8397
                     /locus_tag="IBJ56_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HAM3417147.1"
                     /translation="MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVD
                     SLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVET
                     DVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLP
                     ENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE"
     gene            8487..9071
                     /locus_tag="IBJ56_000885"
     CDS             8487..9071
                     /locus_tag="IBJ56_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3417148.1"
                     /translation="MLDKSVPHISAIMVNHDATNYPEFHLPEGYSFCFYKDGLEEDWC
                     RLQLETGQVLSMDSIRARFETEFGNEKEKLAKRCVFVEAPNGEIIGTAMLWDGNTFGE
                     MASRIHWVAVLDSHGGKGIAKALLSKILGLNKSSFVYLTTQTGSYQAIYLYQKFGFEK
                     YVGKTPENWKTVNFQEEKEAAWQIIENKIAEHQA"
     gene            9178..9738
                     /locus_tag="IBJ56_000886"
     CDS             9178..9738
                     /locus_tag="IBJ56_000886"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HAM3417149.1"
                     /translation="MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNG
                     MTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRL
                     RQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVIHYVLGDFPKAEQPDIIAA
                     IQKSADAIEDFAQTPFIEVMNKYNQK"
     gene            9852..13391
                     /gene="mfd"
                     /locus_tag="IBJ56_000887"
     CDS             9852..13391
                     /gene="mfd"
                     /locus_tag="IBJ56_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HAM3417150.1"
                     /translation="MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASV
                     VEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQ
                     RVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTM
                     GYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRV
                     EEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRS
                     GVKPDMFFKYIGLAYPDPASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETL
                     SRMETVRDVQVSHSFKKLLEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQ
                     MNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQ
                     FVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVV
                     HVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRL
                     NKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQ
                     ETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPT
                     TILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSK
                     DVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLS
                     VIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAM
                     VPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADR
                     MGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMR
                     DLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADA
                     YIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKV
                     HALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITI
                     NVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN"
     gene            13422..15011
                     /locus_tag="IBJ56_000888"
     CDS             13422..15011
                     /locus_tag="IBJ56_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HAM3417151.1"
                     /translation="MPERSMKRLMKGAAWLTAASLISKILSAVYRVPFQNMVGDVGFY
                     IFQQVYPIYGIAMTLALGGFPVVISKMLAEAEGDVRRQQIIMRAVSRMLRIVSIVIFA
                     FLFLFANPIAIMMGDPALSELIRVISFVFLLMPQLAFMRGFFQGEGDMIPTAISQTVE
                     QIIRVAIILIGAGLALHFNFDLYDAGSMAMSGAFFGGVSGIFILRHFYNKKVRLGEGI
                     QPAVFTNKEEKVGIGRTFLRQSIAICVVSSMLILFQLVDSFQVYRLMSDSGIPDFIAK
                     SLKGVYDRGQPILQLGLVISTGLALALVPMITAARVQDQQKELKRSVLLAIKITLILA
                     GAETIGLIVIMRPLNQMLFQTPDGTFVLQLFMPAVFLSSLIIMLSSILQGFGKITVPA
                     VGVGIGLIVKWVTGGILIPRLATVGASVSTCVGLLVILLICYVSLKQTIRVPFVEKTM
                     LFRLIAALALMAVFPCLFEWLAPLNTRLGSAFQAIVSALVGGGIFLVFSLRYKLLGPK
                     DFVFLPFGSKLLALSKLVARK"
     gene            15035..15313
                     /locus_tag="IBJ56_000889"
     CDS             15035..15313
                     /locus_tag="IBJ56_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HAM3417152.1"
                     /translation="MATTMRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTN
                     VKSGDELVIRFGPKIVTAKIERLEENAKKEQATEMYTIIKEERTDESR"
     gene            15542..15928
                     /locus_tag="IBJ56_000890"
     CDS             15542..15928
                     /locus_tag="IBJ56_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HAM3417153.1"
                     /translation="MKKAKSKVARIENRYIKDTATMKKTRSRRRIALFRRLAFMAIIF
                     AVVGGLLTITYTKQVLTLKEKKEKQVQVDKKMVAMKDEQDSLNEQIKKLHNDDYIAKL
                     ARSEYYLSKDGEIIFNIPEENSKQKE"
     gene            16079..16507
                     /locus_tag="IBJ56_000891"
     CDS             16079..16507
                     /locus_tag="IBJ56_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein S1"
                     /protein_id="HAM3417154.1"
                     /translation="MSIEVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVK
                     DINDILTVGDEVTVKVMNIGDDGKIGLSIRKAVDRPDRPEKSYDRKPKYSKKPAGNYV
                     KPAESFEDIMSKFLKDSDERLTTIKRQTESKRGGRGAKRG"
     gene            16614..18560
                     /locus_tag="IBJ56_000892"
     CDS             16614..18560
                     /locus_tag="IBJ56_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA lysidine(34) synthetase
                     TilS/hypoxanthine phosphoribosyltransferase HprT"
                     /protein_id="HAM3417155.1"
                     /translation="MDDTDKRVHKYIEKHDLIRSDDKLLVAVSGGPDSLALLHFLWNS
                     NLVPKEAISVAHINHHLRENAANEQNVVEAFCESQGIPFYIEEVDVKSRAESLQKGIE
                     ETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILMRLVRGSASIGWSGIQPKREL
                     KGGQAIRPFLPITKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQLLPFLKQENPA
                     VYSHFERFSEETSEDFQFLEALASDLLKKNLIKNGKRTTLLLTNFKNEANPLQRRAIH
                     LLLRYLYNEDASFITVNHIYQIIQMIQSDNPSSSIDLPNKLVANRAYDKLHFQFGERE
                     APSEFYHQLELNDRIELDNKASIRLKLKSSVVQTNGLNGMLLDAEEITLPLIVRNRVN
                     GDRMTMKGQAGSKKLKDIFIDAKIPRQERDKLPVITDYTGKILWVPGVKKSAYDREFS
                     RSKKQYIIRYTRNIGGNESMHNDIQKVLISEDELQEKIRELGRELTTEYEGRNPLVVG
                     VLKGATPFMTDLLKRVDTYLEMDFMDVSSYGNGTVSSGEVKIIKDLNASVEGRDVLVI
                     EDIIDSGRTLSYLVDLIKYRKAKSVKLVTLLDKPAGRNVEIEADYVGFVVPNEFVVGY
                     GLDYAERYRNLPYIGILKPEIYSE"
BASE COUNT         6306 a         3280 c         3923 g         5135 t
ORIGIN      
        1 taggcgttac gcattatacg ctcgcgctaa gttctgatgg ttacttgact gataatgatg
       61 aaataaaggt ccacgtcaca ccggataata aaatcgcttt tataaatgga gatttacagc
      121 aagggcagct taggattact aatcaaataa aaatcacaga aaaaaatgct attgaaaaag
      181 catttgaagc cattggtcag agtgaagctc atgtgaaaag ttatattgga aatccagtga
      241 aagaaaaaga aatcatcatc aattccagaa caaaacgctt agtttataat ataaaattga
      301 tttttgctga gccggaagtt gcgagttgga ttattcaagt ggatgcagaa accggcgcaa
      361 ttttaaaaaa acaaaatatg ctttccgagg tagagcgggc tgatacccac aaagattttc
      421 aagcgcttgg taaaggagct aaccgattac tccagaggcc attacatgtc atgaaaataa
      481 atgacctgtt ttacttagtg gatagaactc ataaaggact cataagaact tttgatttaa
      541 accataaaac ggacgcatct tttggaaaag tggtgtcgaa taaaacgaat atgtttacgg
      601 atccggaatt tagttccgcg gtggatgctc atttttacgc aagtgaagtg tacgattact
      661 ataaaaatgt ccatcaacta gagagtctag atggtaaagg tggagaaatt gattcgtttg
      721 ttcattatgg cttgaattgc aataatgctt tttgggatgg ccgagaaatt ctttatggag
      781 atggggacaa aaagaatttc aaaccatttt catgcgccaa aacgattgtt ggtcatgaac
      841 taacgcatgc ggttatccag tattcggcag gattagaata cgaagggcaa tcaggtgcgc
      901 taaacgaatc gttcgccgat gtctttggtt attttattgc gccaaatcat tggttgattg
      961 gtgaggatgt ctgtgtgcgt gggttacgag atgggcgaat aagaagcatc aaagatcctg
     1021 acaaatataa tcaagcggct catatgaagg attatgaatc gcttccaatc acagaggaag
     1081 gcgactgggg cggagttcat tttaatagtg gtataccgaa taaagcagcc tacaatacga
     1141 tcactaaact tggaaaagaa aaaacagaac agctttactt ccgcgcctta aagtactatt
     1201 taacaaaaaa agcccagttt accgatgcga aaaaagcact ccaacaagcg gcgaaagatt
     1261 tatatggtga agatgcttct aaaaaagttg cggaagcttg ggaagcggtc ggagttaact
     1321 gattaacaaa tgttagagaa aacttaattc ttcaagtgat attcttaaaa taattcatga
     1381 atattttttt cttaaattag ctaattaaga agataaccaa ctgctaatcc aatttttaac
     1441 ggaataaatt agtgaaaatg aaggccagat tttccttgtt ctaaaaaggt tgtattagcg
     1501 tatcacgagg agggagtata agtgggatta aatagattta tgcgtgcgat gatggtagtt
     1561 ttcattaccg ccaactgcat tacgattaac cccgacataa tatttgcagc gacagatagc
     1621 gaagattcca gtctgaacac agatgaatgg gaagaagaaa aaacagaaga gcagccaagc
     1681 gaggtaaata cgggaccaag atacgaaact gcacgtgaag taagttcacg tgatattgag
     1741 gaactagaaa aatcgaataa agtgaaaaat acgaacaaag cagacctaat agcaatgttg
     1801 aaagcaaaag cagaaaaagg tccaaatatt aataataaca acagtgaaca aagcgagaat
     1861 gtggctataa atgaagaagc ttcaggatcc gaccgaccag ctatacaagt ggagcgtcgt
     1921 catccagggt tgccatcgga tagcgccgcg gaaattaaaa aaagaaggaa agctatagca
     1981 tcatcggata gtgagcttga aagccttact tatccggata aaccaacaaa agcaactaag
     2041 aaaaaagtgg cgaaagcgtc agttacggat acttctgaaa gtgacttaga ttctagcatg
     2101 cagtcagcgg atgagtctac accacaacct ttaaaagcaa atcaacaacc atttttccct
     2161 aaagtattta aaaaaataaa agatgcgggt aaatgggtac gtgataaaat cgacgaaaat
     2221 cccgaagtga agaaagcaat tgttgataaa agtgcagggt taattgacca attattaact
     2281 aagaagaaaa atgaagaggt aaatgcttcg gactttccac caccacctac ggatgaagag
     2341 ttaagacttg ctttgccaga gacaccgatg cttcttggtt ttaatgctcc tgctacatcg
     2401 gaaccgagct cattcgaatt tccaccacca cctacggatg aagagttaag acttgctttg
     2461 ccagagacgc caatgcttct tggttttaat gctcctgcta catcggaacc gagctcattc
     2521 gaatttccac cgcctccaac agaagatgaa ctagaaatta tgcgggaaac agcaccttcg
     2581 ctagattcta gttttacaag cggggattta gctagtttga gaagtgctat taatcgccat
     2641 agccaaaatt tctctgattt tccaccaatg ccaacagaag aagagttgaa cgggagaggt
     2701 ggtataccaa catctgaaga atttagttcg ctgaatagtg gcgattttac agatgacgaa
     2761 aacagcgaga caacagaaga agaaattgat cgcctagctg atttaagaga tagaggaaca
     2821 ggaaaacact caagaaatgc gggtttttta ccattaaatc cgtttactag cagtccggtt
     2881 ccttcgttaa ctccaaaggt accgaaaata agcgcgccgg ctctgataac tgacataact
     2941 aaaaaagcac catttaaaaa tccgccacag ccattaaatg tgtttaacaa aaaaactaca
     3001 acgaaaacag cgccaaaaaa aataacccct gtgaataccg cgccaaagct agcagcactt
     3061 cctatcacga aagcgcaaga aactgagctt ggggaaaata aagcaccatt tatagaaaaa
     3121 caagcagaga caaacaatcg gccaattgat atgccgagcc taccagtaat ccaaaaagaa
     3181 gttacagaaa gaaataaaga ggaaatgaaa ccgcaaaccg aggaaaaagt ggtaggagaa
     3241 agcgaaccag ctaataatgt gaacggaaaa aaacgttctg ctggcattga agaaggaaaa
     3301 ttaattgcta aaagtgcaga agacgaaaaa gcaaaagaag aaccagtgaa ccatacgacg
     3361 ttaattcttg ccatgttagc tattggcgtg ttctctttag gagcggttat caaaatcatt
     3421 caattaagaa aaaatagttg aagacgcaga atgaaagaaa aagtgaggtg agtgatgtga
     3481 agttcaaaaa agtggttcta ggtatgtgct tgaccgcaag tgttctagtc tttcctgtaa
     3541 cgataaaagc aagtgcctgt tgtgatgaat atctaaagcc ccccgcagct ccgcatgata
     3601 ttgacagcaa attaccgcat aaacttagtt ggtccgcgga taatccgaca aatactgacg
     3661 taaatacgca ctattggctt tttaaacaag cggaaaaaat actagctaaa gatgtagatc
     3721 atatgcgagc taatttaatg aatgaactta aaaatttcga caaacaaatt gctcaaggaa
     3781 tatatgacgc ggatcataaa aatccatatt atgatactag tacgttttta tctcattttt
     3841 ataatcctga taaagataat acttatttgc caggttttgc taatgcgaaa ataacaggag
     3901 ccaagtattt taatcaatcg gtggctgatt accgagaagg gaaatttgac acagcatttt
     3961 ataaattggg cctagcaatc cattattata cggatattag tcaacctatg cacgccaata
     4021 attttaccgc aatatcctat ccaccaggct accactgtgc atatgaaaat tacgtagata
     4081 ccattaaaca caattatcaa gcaacagaag acatggtagt gaaaagattt tgctcaaatg
     4141 acgtgaaaga atggctctat gaaaatgcga aaagggcgaa agcggactat ccgaaaatag
     4201 tcaatgcgaa aactaaaaaa tcatacttag taggaaattc cgaatggaaa aaggatacag
     4261 tggaacctac tggagctaga ctaagagatt cacagcaaac tttggcaggc tttttagaat
     4321 tttggtctaa aaaaacaaat gaataacaat atttaggaat atattcttat ccactcgtta
     4381 gcgggtggat atattttatg gggaggaagt aagccgaatg tatataaaag gggggttaat
     4441 ctttttcttt gtaatgtttg taatcgcgtt atgttccgta ttaatattgc tgataataaa
     4501 aatgagcgta tggaaagagg aaccatttaa tttaagtgat gcaaaggaga ttgagtgtct
     4561 tggaagttgc aaaataaaaa atactaatca aaaaatccat ttcttctcca taaaaaagaa
     4621 tttgtttgag gaagagggca atatggctgg aattttgaat gaacacgagc gaaaaggagc
     4681 tgataagtcc attttcattg taattttaga tgatgaaaaa gggattgcaa acgaagagta
     4741 aagttatgat tagttgtgac tttttcgtgt caatcaaaaa agtgttgtga gcaaatgttc
     4801 acaaaatatc tattgtaata gtgcagtttg ttaggtaccc ttgaatagaa aaaacaatgt
     4861 aggaggaaca tctatgaaaa tgcttaaaaa gggtacaacg gttttatttg taatgattat
     4921 ggcggttatg ttagtcgcgt gtggggataa agaagaaacg aaaacttact cactttccca
     4981 aaatggtgtt gattctaaat taacatacac atataaggga gacaaagtta ctaaacaaac
     5041 agctgagaac acaatgtcat atgcttcgct aggtgttgct tcaaaagaag acgctgaaaa
     5101 aatgcttaaa gcaacaagcg ataaattcca aggtattgat ggtttaaaag aaaagattga
     5161 atataaagat gataaagcta ttgaaacact agaagtagat tacactaaaa tctcttcgga
     5221 agatatgaac aaaatccctg gtatgtcttc aaacggtgat acttctaaag ggattagcat
     5281 ggaggaatct gcaaaaatgc tagaatccca aggctataaa gaagtttcaa aataaatttg
     5341 caataaaaaa agaagtatcc gattcatttg gatacttctt gttttattca ataatcttgc
     5401 gcttcgatga caacagctgt accagatgca gtgaccataa gcattccgtt atcagctcca
     5461 agcacttcat aatcaatgtc aacaccgata acggcatttg cgccaatatc tttcgcacgt
     5521 tgttccattt cgcgaattgc ttcctcgcga gcattaataa gttcatcttc atagccttgc
     5581 gaacggcccc cgaagaaatt tcgaagtcca gctccaatat ctttcatgaa gttaacgccg
     5641 gtgatgactt cgccgaaaac gattttttta tattcgataa tttgtttacc ttcaatattt
     5701 ggtgaggttg ttacaatcat gagttatccc tccagttttt cttttatcat acctcttact
     5761 actttttcta gtcaaaggat atccggttat ttcgtacgat ttctcgcttt ttctatataa
     5821 gaaatagcat ccggaacttt acacgctgta tttccaaggt ttacatgaac tttcccgact
     5881 gatttcgcag cttccattgc tttttcgtgc aaatcgtctt tgtaaattcc acaagtgata
     5941 ataaaaccgt tcattgaata gcgggttcta ttggtttctg tttgcagcgt ttctttcgcg
     6001 cgttgaagta atgcctctgc ttcaggcaaa ttgttaatat gttcgctata aatctgccag
     6061 cccatggatt tagttaaatc ataatcactt tcaatccacg ttttggcgaa aaggagtgca
     6121 tcatcacgtt tgcttacaat cgatgctagt ccaaaagtta gttgtgacca tgtttcgcga
     6181 aaaatgatat tccatttttc gatttgttcc gtggttattt tgtcgggatt aatcgctagc
     6241 aaaccgagat aaatcaagtc actattattt gattcaatca gctctacggc gagttcgtga
     6301 ttttttgtca gtttttctcg gcgaataatt ttctttaaat caccaatttt tagtccgtaa
     6361 agatctaatg aatccggaca gccgtgatta cgaaaaattt taatcgtatt ggggttttct
     6421 aaggcttgta gctcggtatt aagttggtca aaagtaatcg tacgcgtcac tcctctcgaa
     6481 taaattaagt ataacaaaaa aagcatgcga aggcgcatgc ttttaggatt tgagaatatt
     6541 agtcgatttg tttcattgcg tcgtctagaa cttttttaag tgtatctgca gagtttttca
     6601 tttgttcttt ttctttgtcg tttaaattca tttcaacaat atggcgaacg ccttgacggt
     6661 taacgactgc gggagcgccg atataaatgt cgttcatacc ataatgacca tctagataaa
     6721 cagaaagtgg taagatcgca ttttcgttat ttagaattgc ctttgtaata cgagctagag
     6781 ctgcagcaac accgtagaat gtagcgcctt ttttattaat aatttcataa gctgcatcac
     6841 gaacacttac gaaaatagta tccattgcac cttgttcatc ttcgctaatc cattcagtga
     6901 ttggaagacc gccgacagtt gtgtggctcc atgctgggaa ttctgtatcg ccgtgttcgc
     6961 caaggatgta accatggacg ttacgagcat ctacttttag atagtcggca attgacatac
     7021 ggaaacgtgc tgtatcaagg cttgttccag aaccgataac acgttctttt ggaagacctg
     7081 agaatttcca tgtagcgtaa gttaagatat ctactgggtt agaagcgatt aagaagatac
     7141 cgtcaaatcc gctagccatt acttcatcca cgatgccttt catgatttta atattacgat
     7201 ttactaaatc taaacgagtt tcaccaggtt tttgtgcagt cccggcagtt acaacaacta
     7261 agtccgcatc gtggcagtcg ctataatttg ctgagtagat tttcttaggt gtagaaaatg
     7321 gaacggcatg acttaaatcc attgcatccc caatagttct gtctttatct atgtcaatga
     7381 taccaaattc ttgtccaatg cttaagttta cacaagcaaa tgcgtaacta gaaccaactg
     7441 ctccgtcgcc aactaaaata attttttgat gatctttcat ttcgaattcc tcctataaaa
     7501 aatctattta ctagtacagt ataacatgaa tttttcattt gtgaagcgtt gaacgtcctg
     7561 aatttaaaaa agttgttata ataaatttgt gaaaacgcta tagtacagtt tggaagcgtc
     7621 cacattagcg aatagccgct attttctgtt taccttttat tgagaattat aaaccttaca
     7681 aatcaaaatt aggctatttc tttgttttgc tatttttcta aagggtagat ataatgtaga
     7741 tgtaccaaaa ttgaatgagt ggagtgattt tttatggcaa caacattaga ggtccagaaa
     7801 agagaaacaa cgcaacattc agaagtaacg agattgcgta gtgaaggaaa agtacctgga
     7861 attatttatg gctacaaatc ggaaaatgtt ccagtttccg ttgattcttt ggaattaatc
     7921 aaagcagttc gtgacaatgg tcgtaacgcc gtattttcag ttactgtgga cggcaagaaa
     7981 ttaaacgttt tattacatga atatcaagta gatccgttaa aagacgtatt agtacacgtt
     8041 gatttactag cggttgatat gaatgaagaa gttgagacag atgttcgtgt ggtattagtt
     8101 ggggatgcac cgggagttaa agctggcggc gtactacaac aaattatcca tgatgtaaaa
     8161 gtttcagcaa caccagaaaa attaccagaa acaattgaat tagacatttc ttcattagaa
     8221 atcggtgatg ttttaacaac gaacgacctt ccggaaaaca aagactatgt cgtgcaagcg
     8281 gaggaagaag aaacagtagt aactgtatct gctccacgtg cggaagaaga accaacgact
     8341 acggaagcac ctgaaccaga agctgtacat ggtaaagatg aagaacctgt tgaataattt
     8401 tgaataaata aggatggaag attcgcattt gtttgcgata tcttccattt tttttgttat
     8461 aatggtttcg agaaggaggc gtttatatgc ttgataagtc agtaccgcac atttctgcta
     8521 ttatggtcaa tcacgatgct acaaattatc cggagtttca tttacctgag ggatattctt
     8581 tttgctttta taaagatggt ttggaagaag actggtgtag attgcaatta gaaacgggtc
     8641 aagtgctttc aatggacagt attcgcgctc gttttgaaac ggaattcgga aatgaaaaag
     8701 aaaaattagc caagcgttgc gtctttgtag aggcgccaaa tggtgaaatt attggaacgg
     8761 ctatgctttg ggatggaaat acattcggcg agatggcgag tcggattcac tgggttgcag
     8821 tgcttgattc gcacggtgga aaaggtatcg cgaaagcctt gttatccaaa attctcggct
     8881 tgaataaaag tagttttgtc tatttaacta cgcaaaccgg aagttatcaa gctatctatt
     8941 tatatcagaa attcggtttt gaaaaatacg tcggaaaaac gccggaaaat tggaaaacag
     9001 tcaattttca agaggaaaag gaagcggcct ggcaaattat cgaaaataaa attgccgaac
     9061 accaagccta gttggaaaac tttcaaccaa gtgaaatcca tgttataatc aaaaaaacat
     9121 cgaaacaaaa accagttcat tcgtgaagtg gtttcgttca tgtaaggaga agcttttatg
     9181 aaactaatcg caggactcgg aaacccgggc aaaaaatacg aacgtacccg gcataatgtc
     9241 ggttttatgg tagttgacga actaagtttt cgtcatcaaa ccccttggaa gaaatcaaaa
     9301 tttaatggta tgactagcga gattatcgtc ggcggtgaaa aaatgatttt agtgaaacca
     9361 ctcactttta tgaacgcttc aggtgaatgc attcgtccgc taatggatta ctacaacata
     9421 ccaattgaag atgtcgtgat tgtgtatgat gatctcgatt taccagttgg gaagattaga
     9481 ttacgccaaa aaggtagtgc tggcggacat aatggaatga aatcaattat tcaacacgtt
     9541 aaaacacaag agtttaatcg cattcgtgtt ggcgttagtc gtcctttaaa aggagaagtt
     9601 attcattatg tcttgggaga ttttcctaaa gcagaacaac ctgatattat cgcagcgatt
     9661 caaaaaagcg ctgacgccat cgaagacttt gcacagacac catttataga agttatgaac
     9721 aaatacaatc aaaaatagac gatgacgagg cgtggcaatc ttttgccacg tatttcggtc
     9781 tttcttcgga cgcgtgattt actcttgcgt tgcatagaat gaattttctg acaaaaagga
     9841 gctgttttcc cttgaaagga ttacaacaat taatatatga acaaaaagat attcgagcgg
     9901 tcttaaatgc gctggatgaa aaagaaaaag cacaacttgt cacagggctc acaggttctt
     9961 cacgtgcgtt atttgcaagc gtggtagaag gtgcgtcaaa gcgtccggtt gtatttgtta
    10021 cgcacaattt ataccatgcg caaaaattat atgatgattt actttcttta atggatgtcg
    10081 atcgactatt tttatatcca gcagatgaac tgatttcttc tgagttgagt atctctagcc
    10141 cggaacttcg cggtcaacgc gtggaagcgc tcgacttctt actatccgga aaaccgggga
    10201 tagtcattgt gccagttgct ggtctcagaa aaatgcttcc accagtatcg ctttggaaac
    10261 atttcaacat atccattgta gagggcgaag aaattgatcc agatgtacta cgccaaaaac
    10321 tagtgacaat gggctacaca atgagcggaa tggtaaatac gccgggagaa ttcagtgttc
    10381 gcggcgggat tattgatatt tatccaatta cagaagaatt tccaattaga atagaacttt
    10441 ttgacaccga agtagattct cttcgtttct ttgatgtgga aacgcagcgc tcgacaaccc
    10501 gcgtggaaga attccgccta ctgcctgcaa ctgaaatcat tttagatcaa agctattatc
    10561 cggatatcgt caaacgctta gaaaagaaaa tgacacatac tttaaatgaa ttgaaagaaa
    10621 acgaggataa acaagcgctc gttgaaaatt tagaagaaga tctggaaatg cttcgttctg
    10681 gcgtgaaacc agacatgttc tttaaatata tcggtctggc ttatcctgac ccagcctcgc
    10741 tttttgatta ttttccaaaa aacacggcaa ttttgcttga tgaatttggg cggattttag
    10801 aaacggaaga aagcttggag cgggaagaag cggagtggca aacagaaaca ttaagtcgaa
    10861 tggaaacggt tcgcgacgtg caagtaagtc attctttcaa aaagctatta gaagcaaatc
    10921 actcgccgaa aatatactta tcccttttcc aaaaacaaat ggcgagcatg cgcgtctcga
    10981 aaacaactaa catcgtctat aaacaaatgc agcaatttca tggccaaatg aatgtgttga
    11041 aaaccgagct agaaagttgg cataagaata attatgccgt tgttatttta gccccaaacc
    11101 ttgagcgcgc cgaaaaaatg caacaaactt taactgacta cgatatggaa agtacgattt
    11161 tgaaaaaaga atcggatgtg ccgaaatatg gaatggttca gtttgtcatc ggaacgttcc
    11221 agaatggttt tgaacttcca ttagctaaag tagcgattat aagtgaaacc gaactgttca
    11281 ataaaaaaat caaaaaagtg aagaagcgcc aaaagctctc gaatgcagaa cgaatccaaa
    11341 gttactctga attaaaagta ggtgactacg tggttcatgt gaaccatggt atcgctcgtt
    11401 atgttggcat ggaaacgcta gatatcaacg gtgtgcataa agattacttg ctacttgttt
    11461 accaaggaga ggataaacta tttatccccg tcgatcaact tgatttagtt caaaaatatg
    11521 ttggtgcaga aggtaaatca ccaagattaa acaaacttgg tggcgctgaa tggaagcgag
    11581 tgaagaagaa agtacaagct tccgtccaag atatcgcaga cgatttaatc aaactatatg
    11641 ccgaacgtga agctgaaaaa ggctatgcgt ttagtgcgga tgatgaaatg cagcgcgaat
    11701 ttgaagaggc tttcccgtat caagaaaccg aagaccaact gcgctcgatt tcagaaatca
    11761 aaaaagatat ggaacgaccg cgcccgatgg accgtctgtt ggttggagat gttggttacg
    11821 gaaagaccga agtggcctta cgagctgctt tcaaagcaat tatggatggc aagcaagtcg
    11881 ccttcttagt tccgaccacc attttagcgc aacaacattt tgaaacaatg aaagaacggt
    11941 tccaaggttt cccaatagaa atcggacttt taagccgttt ccgaacaaag aaacaacaaa
    12001 cagaaacatt aaagggtatg aaaaacggca cagtcgacgt tgttgttggt acccatcgtt
    12061 tattatcaaa agatgtggag tatcaagatt taggcttatt aattgtcgat gaagaacaac
    12121 gattcggcgt aactcataaa gaaaaaatca aacaaatgcg ttccaaaata gacgtactaa
    12181 cacttactgc aacaccaatt ccaagaactt tacacatgtc catgctcggc gttcgtgacc
    12241 tctctgttat cgaaactccg ccagcgaacc gttttccagt gcaaacatat gtggcggagc
    12301 agaataacgt tttagttcga gaagcaattg aacgtgaact agcgcgcgac ggacaagttt
    12361 attatctata taatcgagtg gaatccatta cgcaaaaagc agatgaaatt tctgcgatgg
    12421 ttcctgatgc tagggttgcc actgcgcacg gacagatggg tgaatcggaa ttagagtctg
    12481 ttattttaag tttccttgaa ggggaattcg atgtacttgt aacgacgacc atcattgaaa
    12541 ccggcgtaga cattccaaac gttaatacac tctttgttca agatgctgat cggatgggtc
    12601 tttcacaact ttatcagttg cgcggacgag tagggcgttg gaacagaatc gcctacgctt
    12661 acttcatgta tcaaaaagat aaaatattgc gtgaggaagc ggagaaacgc ttatcggcta
    12721 ttaaagaatt cactgaatta ggttcaggtt tcaaaatagc gatgcgtgac ttatctattc
    12781 gtggtgccgg taatatcctc ggagcgcaac aacatggctt tatcgattca gtcgggtttg
    12841 atctctactc gcaaatgctt aaggaagcaa ttgaggcgaa aaagccaaaa gaagaacaaa
    12901 aacaaattgt ccctgttgaa attgatatcc aagcagacgc ctatattccg gaatattaca
    12961 ttacagacgg ccgccagaaa atcgagatgt acaaacgctt ccgcaatatt gaaacgttaa
    13021 gcgaactcga agatttacaa agcgatatga ttgaccgttt tggtgaatat ccagaagaag
    13081 tagaatatct attcacaatg acagaactca aagtccatgc actcgaagtt ggcattgagt
    13141 ccgtcaaaca agaacaaaat aaaattacca tgctattttc agaaagcgga acagcaggca
    13201 ttcgcggaga tatcgtcatg caaatcattg gcgaatttgg ccgaatggtc ggtgtgggta
    13261 tggaaggtac acaactaaaa atcacgataa acgtccaaaa taaaccttta aaagaatggt
    13321 tataccaagt caaaagtttg gctgaaaaac ttcgcggagc catgaaagaa agagcatctg
    13381 cagaaaattg ataagttatt aagaaggaag gaggtggcgg agtgccagaa cgttccatga
    13441 agcgactaat gaaaggagcg gcttggctaa ccgcggcctc tcttatttct aaaatactta
    13501 gcgcagttta ccgagtaccc tttcaaaata tggtggggga tgtagggttt tatattttcc
    13561 aacaagtata tccgatatac ggaattgcaa tgaccctcgc actcggtgga ttcccagttg
    13621 ttatttctaa aatgttagcg gaggcagaag gagatgtaag acgacaacaa ataattatgc
    13681 gcgcagtctc acggatgctc cgaattgtaa gtattgtgat tttcgccttt ttattcctat
    13741 ttgccaaccc gattgctatc atgatgggag acccggcatt atctgaatta attcgggtca
    13801 tcagtttcgt gtttttactt atgccacagc ttgcgtttat gcgtggcttt ttccaaggag
    13861 aaggtgacat gattccgacc gcaatctcgc aaacagtgga gcaaattatt cgagtagcta
    13921 ttattttgat aggtgccggc cttgcacttc attttaattt tgatttatat gatgcaggtt
    13981 caatggcgat gagtggtgcc tttttcggtg gggtttccgg gattttcatt ttgcgtcatt
    14041 tttataataa aaaggtaagg ctcggggaag ggattcaacc agcagtattt acaaataaag
    14101 aagaaaaagt aggtattggc cgcacgttct tgcgacaaag tattgcaatt tgtgtagtta
    14161 gctccatgct gattttattc caattagttg attctttcca agtatatcgt ttaatgagtg
    14221 actcagggat tccggatttc atcgctaagt cgctaaaagg ggtatacgac cgcggacagc
    14281 caatcttgca attaggttta gtcatctcaa ctggacttgc gctcgcgctt gtcccaatga
    14341 ttactgccgc aagagttcaa gatcaacaaa aagaactaaa acgctccgtc ttattagcga
    14401 ttaagattac attaattttg gcaggtgcag aaacaattgg actcatagtt attatgcgtc
    14461 cgttaaacca aatgcttttc caaacgccag acggtacatt cgttttacaa ttatttatgc
    14521 cagctgtttt cctaagctca ctaatcatca tgttaagcag tattttacaa ggtttcggga
    14581 aaattactgt acctgcagtt ggcgttggaa ttggacttat tgtaaaatgg gtaacaggag
    14641 gcattcttat tccgagactg gcaacagttg gtgcatccgt ttcaacatgt gttggcttac
    14701 ttgtgattct actcatttgt tacgtatcac taaaacaaac aatccgcgtg cctttcgttg
    14761 aaaaaacaat gttgttccgg ctaattgccg ctttagcgtt aatggctgta ttcccgtgcc
    14821 tatttgaatg gttagctcca ctcaatacaa gactcggtag tgcgttccaa gcaattgtta
    14881 gtgcgttagt tggcggcggg attttccttg ttttttcact aagatataaa ttactcggtc
    14941 caaaagattt tgttttcctt ccgtttggct ccaaattact agcgcttagt aagctggttg
    15001 cacggaaata attaatataa agtaggtgaa taaaatggct acaaccatgc gattagataa
    15061 atatttaaaa gtatctcgac taattaaaag acgtacagta gcaaaagaag tcgcagaaaa
    15121 aggtcgcatt gcggtaaatg gagtgacggc gaaaccagga accaatgtaa aatctggaga
    15181 tgaactagtt attcgctttg gtcctaaaat cgttacagca aaaatcgaac gcctagaaga
    15241 aaatgcgaaa aaagaacaag caactgaaat gtatacgatt attaaagaag agcgcacaga
    15301 cgaaagtaga taaagaaaaa tcgtttgaaa tggcactatt tagccgattt caaacgattt
    15361 tttattggtc ataaaaatcg gtaaacaatt ttttgtcaaa aagtcaagaa aaatatcata
    15421 aaattagcgg attccaatag acaaatgccg gatttattga tatcatttta agcaagaaac
    15481 gtttttttct ctaccgaaaa tcatagacaa ttagcaaata agaacatggg agggacgatg
    15541 tatgaaaaaa gccaaatcaa aagtggcgag aatagaaaat cgctacataa aagatactgc
    15601 aacaatgaaa aaaactcgta gtcgtcgccg cattgccctg ttccgtagac ttgcttttat
    15661 ggctattatc tttgctgtgg tgggtgggtt attaaccatc acatacacta aacaagtgtt
    15721 gacactcaaa gagaaaaaag aaaagcaagt gcaagtggat aagaaaatgg ttgcaatgaa
    15781 ggacgaacaa gactcgctaa atgagcaaat caagaaactt cacaatgatg attacatagc
    15841 taaattagca agaagtgaat attacttgtc caaagacgga gaaattattt ttaatattcc
    15901 tgaagagaat tcgaaacaaa aagagtaagt cagagccgag ccgtcattct ccatggtaaa
    15961 tcaaagggaa aatatagttg agtatttttg gggtttgtaa gtttgactgt ttgacactct
    16021 ttttattata gctataatta agcaatagag tgatatttta aggaggacgc atttttttat
    16081 gtcgatcgaa gtaggcaaca agttacaagg gaaagttact gggattacta attttggagc
    16141 atttgtggag ctggaaggtg gcaaaacagg tttagtccat attagtgagg tagcagataa
    16201 ctatgttaaa gacattaatg acatcttaac tgtaggggat gaagttactg ttaaagtaat
    16261 gaatattggt gatgatggta agattggtct gtccattcgt aaagcagtag atcgtccgga
    16321 ccgcccagag aaaagttacg atcgtaagcc gaaatacagc aaaaaacctg ctgggaacta
    16381 tgtgaaacca gccgagagct ttgaagatat aatgtctaaa ttcttgaaag atagtgatga
    16441 aagactcact actatcaaac gccaaacaga atctaaacgt ggcggccgag gagcaaaacg
    16501 cggctaatac gctaaaatta attgtaaagt agatgcaccg tattggatca ttaatacggt
    16561 gcacttttta ataaaaaatg tgagagccga atttcgaagg aaggttttct tgaatggatg
    16621 acaccgataa acgagtacat aagtatatcg agaaacatga tttaatccga tccgatgata
    16681 aattgcttgt ggcagtttct ggcggtccgg attctttggc gttactgcat tttttatgga
    16741 attcaaattt agtcccaaaa gaagcaattt ccgtcgcaca tataaatcac cacttaaggg
    16801 aaaatgcggc gaatgaacaa aacgtcgtcg aagctttttg cgagagccag ggcattcctt
    16861 tttacataga agaagtagac gtaaaaagtc gagctgagag tttgcaaaaa ggtatcgagg
    16921 aaacagcgcg cattgtcagg tatgatttct ttgagaaagt aatggctgag aaaaagatca
    16981 acaaactagc gctcgcacac catgcagatg accaaatcga gacaatctta atgcgactag
    17041 ttcgcggaag tgctagtatc ggctggtcag gcatccaacc aaaacgcgag ttaaaaggag
    17101 gacaagcaat ccgtcctttt ttaccaatta caaaagcaga aattattgat tacgcccaga
    17161 aacacgaatt ggcatacgaa atcgatgaat caaatactag tcaagaatac acaagaaatc
    17221 gttacagagc gcaactttta ccgtttttaa agcaagaaaa tccagctgtc tattcgcact
    17281 tcgaaagatt ttcagaagaa acaagcgaag acttccaatt tttggaggca cttgcgagtg
    17341 atttattgaa gaaaaacctc atcaaaaacg gcaaacggac aacactttta cttactaact
    17401 ttaaaaatga agcgaatcct ttacaacgcc gcgcaattca tttactattg agatatctgt
    17461 acaatgaaga tgccagtttt ataacggtaa atcacatata tcagattatc caaatgattc
    17521 aaagcgacaa tccatctagt tcgattgact taccaaataa actcgttgca aacagagcat
    17581 acgataaact tcattttcaa tttggagaaa gagaagctcc ttccgagttt tatcatcaac
    17641 tagaactgaa tgaccgcatt gaattagata ataaagcaag tatccgttta aagttaaaaa
    17701 gttccgttgt tcaaacaaat gggctaaatg gaatgctact ggatgctgaa gagataacac
    17761 ttcctttgat tgttcgaaac cgtgtgaacg gcgacaggat gacgatgaaa gggcaagcag
    17821 gaagtaagaa acttaaagat attttcatcg atgccaaaat accaaggcaa gaacgcgaca
    17881 aactccctgt gataacagac tatactggga aaatcctttg ggttcccggt gtgaagaagt
    17941 ctgcatatga ccgagaattt agtcgtagca aaaagcaata cattattagg tacactcgaa
    18001 atataggagg aaacgagagc atgcataatg atattcagaa agtgctgata tcggaggacg
    18061 aattacaaga gaaaattcgt gaactaggtc gtgagttaac aacagaatat gaaggacgaa
    18121 acccattagt agttggggtg ttaaaaggag caactccttt tatgactgat ttacttaaaa
    18181 gagtagacac atacttagaa atggacttca tggacgtatc cagttatgga aatggtactg
    18241 tatcatcggg tgaagtgaaa atcattaaag accttaatgc gtcagtagaa ggtcgcgatg
    18301 tacttgtaat tgaagatatc attgatagcg gacgtacact tagttatcta gtagacctaa
    18361 tcaaataccg taaagcaaaa tcagttaagt tggttacttt acttgataaa ccagctggac
    18421 gaaatgtaga aattgaagcg gattatgtag gctttgtcgt accaaatgaa ttcgtcgttg
    18481 gatatggttt ggattatgca gaacgttacc gcaatctacc atatattggt attttaaaac
    18541 cagaaatata cagcgagtga aattaattaa caaacagaac aatattttgt taaaatgtaa
    18601 tagatagctt ttcagaaaac gaaaacaaaa aattgatgtc aaac
//
LOCUS       DABQVC010000036        18634 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.036,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000036 DABQVC010000000
VERSION     DABQVC010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18634
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.036"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..4354
                     /locus_tag="IBJ56_000893"
     CDS             <1..4354
                     /locus_tag="IBJ56_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HAM3417156.1"
                     /translation="FWAKYQRTDVLKIDNKGLMAYNADVNGADQLKMSIRESENNYKE
                     ITLFDSVPEILANSSPYIFMEDRGDGNVFVVMSTPTTWYIALVNIASEQVVETKKMTM
                     NSSTTLNSVIYSEGKGLLLGGSTHAEESIFGSEPLNKNNGYYLALGNDLNVTDSQILR
                     TNQHNSLTTIINGVGNKVDGFFSYDGLNNDGYIQNVEYPNTYDVNPNGAMIFAEFNLQ
                     PAPVLDTGNPILAFYQGERRADFDELEGVKAYSGIDSSDITKSITKNTFDLYTVGVQQ
                     QLYQIEYLPGSGNKTTGTRNIQLLHPLETPKLEKSYADSHGAFKVGEVVPANAIHAFN
                     GLDSANNVTYVVTAVDDEKITVDASIKRTEGTKTAVISKEITLMTSTADETAVIDVTS
                     VALAAGKYTSLTDVRSEGHFHIYAETMDNVSIDPKYVKLTEDPENPVDWNAPGVYYVT
                     ASLDPASGYTAKDVKVSVAVVDVGSPKVISVNMKPYNPTTALVVAEDDINGAGVYKIN
                     WAIKDANGLIIQQGVEESGATIRVQTPVPIDLSTLNDGNYTLSVSAADRIGHTSEASE
                     KAFTVDRQAPVVTADDKITYEINTKKTEEQFLNDVNVKTEAGAVIKTNFDTMVRMDSP
                     GDYTVLVEATDAAGNQSDPIYVIVTVEDTVAPIISADEAISYNQGNTRTEAQFLADIH
                     ATTDEPATITSDFADQVKFDTPGVYAVTLKANDISGNQAIPRTVNVTVKDVIAPVITA
                     DEAIIYEKGITKSATDFLTDVHAATNDGSAITSNFATVVDLNTPGDYDVTLNSTDAGG
                     NKSDPITVTVTVRDTTPPVITADTTITYEKGTTKTAAAFLTDVNATTNDGSAVTSNFN
                     PNSLKQVGTYQVTLSAIDENGNYALPVKVTVIVQDTQKPVISSSATSITYERGEKKQE
                     TGFFLDLAIKTDDGTPVTSDFDTAVNLDTAGSYTVTLNAEDESGNKADPVTITVIVAD
                     TEKPIITADTTITYAKGTTKTAAQFLTDIHATTNDGSTITSNFDPTVLTQEGTYKVVL
                     NAKDDSNNEADPVTVTITVVDTKGPIINALNTITYERTINKNEADFLADIEATTDDGS
                     TITTDFNSKDLDTVGTYTVTLNAEDASGNKATPVKVTMKVEDNIPPIITADQSITYER
                     GITKTEQAFYTDINAATSDNSAISSDFSKIDLTKTGNYEVLLQATDQSGNKALPLKIN
                     VLVQDTIAPVIKTTSREITNERGVPMTEQQLLARIGANTDDGSKITTDYNPAIVNTSG
                     DYLVHLYAVDAAGNQATPVEITIHVKDTTAPIITADKKISYPVGTDKTVTEFLQDIHA
                     TTDDGSKITTDFDPNMLKTKGTYTIHLNAVDADGNKAKTIDVSLTVEEKVTPPTPPTP
                     PTPPTPDDGGNNTNNGSNGTNDRNANITVNPTKQNTTATNESIPALGDTTSTIPVIVG
                     MFLLATSLVLIRRK"
     gene            complement(4387..4689)
                     /locus_tag="IBJ56_000894"
     CDS             complement(4387..4689)
                     /locus_tag="IBJ56_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417157.1"
                     /translation="MSLIPLSLIIFLGFLAVLCLFDFVFRLYWFKYFLATMGLIASGV
                     VFFISFYGGGMSQTEIAIAIFIGSFGEYVVSLIISLVRFISRKSKKPKQKKKAKTA"
     regulatory      4896..5004
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            5111..6310
                     /locus_tag="IBJ56_000895"
     CDS             5111..6310
                     /locus_tag="IBJ56_000895"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HAM3417158.1"
                     /translation="MAKNRHLFTSESVSDGHPDKIADQISDAILDAIISKDPDARVAC
                     ETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDAETCAVLTAIDEQS
                     PDIAQGVDEALESRSGKEIDAAIEAIGAGDQGLMFGFATDETEELMPLPIFLAHGLAR
                     KLTELRKTNKLDYLRPDAKTQVTVEYDEFNQPVRIDTIVVSTQHHPDITQEQIAKDLH
                     TYLFPEVIDASFLDEDTKYFINPTGRFVIGGPLGDAGLTGRKIIVDTYGGYARHGGGA
                     FSGKDPTKVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSD
                     YSEQELIDGVNELFDLRPAGIIHMLDLRRPIYRQTAAFGHFGRSDLDLPWERTDKAEA
                     LKKLIVK"
     gene            6447..8312
                     /gene="asnB"
                     /locus_tag="IBJ56_000896"
     CDS             6447..8312
                     /gene="asnB"
                     /locus_tag="IBJ56_000896"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HAM3417159.1"
                     /translation="MCGFVGCVHDRITEITGADKETFRQMNSMITHRGPDDEGYFTDD
                     HVQFGFRRLSIIDVENGHQPLTYENERYWIIFNGEVYNYVELREQLVAEGMTFETESD
                     TEVIIATYAKYKEKTAERLRGMFGFVIWDKQEELVYGARDPFGIKPFFYAEEDGKLFM
                     GSEKKSILHALKEKELDEVSLQNYMTYQFVPEPDSLTKNVKRLEPGHQFTKKIGQPME
                     ITTYWKASFAPVTKSEDAWIKEVRDVMYDSVKMHMRSDVPVGSFLSGGIDSSIIAAIA
                     KEYHPAIKTFSVGFERDGFSEIDVAKETADKLGVENISYVISPEEYMKELPKIVWHMD
                     DPLADPAAIPLYFLSREARKQVTVALSGEGADELFGGYNIYNEPNSLAMFNKMPSVFK
                     SMLNSVARIMPEGMRGKSFLERGTTPMEERYIGNAKMFTEKEKQILLPKYQAGHDYTN
                     ITDPFYAETTNYHPVERMQYIDIHTWLRGDILLKADRMTMANSLEVRVPFLDKEVYNV
                     ARNIPDTMKTTNGTTKYILRKAAATFVPEHVLNRRKLGFPVPIRHWLKDEMNAWVKNI
                     IKESPTDHLINKQYVLGLLDDHCAGKFDYSRKIWTVVIFMIWYDVYVADKYDFGK"
     gene            complement(8334..8912)
                     /locus_tag="IBJ56_000897"
     CDS             complement(8334..8912)
                     /locus_tag="IBJ56_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAM3417160.1"
                     /translation="MNLRGILPFAHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGI
                     NGHVLGFDIQQMAVDATKARLENAGVSSQVELVCASHARIPAYTSRPVRAAIFNLGYL
                     PGGDKEITTTADSTLESIGHLMQLLEVGGVIILVIYHGHPAGKIEKDAVVTFCEAIPQ
                     QDFHVLSYQFINQKNDAPFVIIIEKRKPRQAN"
     gene            complement(8909..9874)
                     /locus_tag="IBJ56_000898"
     CDS             complement(8909..9874)
                     /locus_tag="IBJ56_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465186.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HAM3417161.1"
                     /translation="MKQTNPFVYSNDNKRYHTWNYCLREEFGQKTYKVALDGGFDCPN
                     RDGTVAHGGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTN
                     THAPVAELREKFETVLNEPGVVGLSIATRPDCLPDDVVEYLAELNERTYLWLELGLQS
                     AHDETGRLINRAHDYDCYLEGVHKLQKHNIRICTHIINGLPKETPEMMMETTRKVVES
                     GVDGIKIHLLHLLKGTPMVEDYKKGDLEFLTRDGYVNLVADQLEILPPEMVIHRITGD
                     GGVDDLIGPVWSLNKFEVLNAIDAELVRRDSWQGKHYQPVEVISE"
     gene            10278..12689
                     /locus_tag="IBJ56_000899"
     CDS             10278..12689
                     /locus_tag="IBJ56_000899"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HAM3417162.1"
                     /translation="MTFNHKKMEPKWQQYWSEHNTFKTTEDKNKDNFYALDMFPYPSG
                     AGLHVGHPEGYTATDILSRMKRMQGKNVLHPIGWDAFGLPAEQYAIDTGNDPEEFTAL
                     NIANFTRQIKSLGFSYDWDREINTTDPEYYKWTQWIFEKLYEKGLAYEAEIAVNWCPA
                     LGTVLANEEVIDGKSERGGFPVFRKPMRQWMLKITAYADRLLDDLDLVDWPENIKDMQ
                     RNWIGRSEGAEVTFKIKDSDETFNVFTTRPDTLFGATYTVFAPEHELIEKITTPEQKE
                     AVEAYKKQVELKSELERTDLAKDKTGVFTGAYAINPINGEEVPIWIADYVLIQYGTGA
                     IMAVPAHDERDFEFAQQFGLNIRPVLEGGDVTKEAFTGDGPHINSDFLNGLAKAEAIT
                     AAIDWLEKEGIGSRKITYRLRDWLFSRQRYWGEPIPVIHWEDGETTLVPEDELPLLLP
                     KATEIKPSGTGESPLANLHDWVNVTDKNGRKGRRETNTMPQWAGSSWYFLRYIDPNNS
                     EAIADKEKLAEWLPVDVYIGGAEHAVLHLLYARFWHKFLYDIGVVPTKEPFQKLFNQG
                     MILGENNEKMSKSRGNVVNPDEVVEKYGADTLRLYEMFMGPLEASIAWNENGLEGARK
                     FLDRIWRLLVTEEGTLAEKVTTDANANLEKAYHHMVKTVTNHYENLRFNTGISQLMIF
                     INEAYKQDTIPKQYVEGFVQLLSPIAPHLAEELWEILGHTETISYVAWPTYDETKLVE
                     DEVEIVLQVNGKVKSKITVAKSLEKEELEKIAQEDNKMKENLEGKTIRKVIVVPGKLV
                     NIVAN"
     gene            12777..13628
                     /locus_tag="IBJ56_000900"
     CDS             12777..13628
                     /locus_tag="IBJ56_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAM3417163.1"
                     /translation="MSNGSIINRIEGILNDLPKSEKKIGQAVLANPEFTTTASIHKLA
                     QQADASGAAVIRFCKSIGLQSFPELKRQLSLDLAQPQKKGYYDIEPNEDFHTITEKLV
                     SNMIQTMNDTASQLDEAKVLEACELLGEADTIYTYGVGASWLVAEDISQKWLRAGKHV
                     LATQDAHVLAMAFATGKKKAVFIAISNSGETSEVLQLVDQAKLNNVIVISLTRFGSNK
                     LKEKADLSLETSRAPEAEIRSTATSSRQAQLLVIDILFYYYASHHYDEMIQQIKHSRE
                     ATNRFRE"
     gene            13769..14659
                     /gene="murQ"
                     /locus_tag="IBJ56_000901"
     CDS             13769..14659
                     /gene="murQ"
                     /locus_tag="IBJ56_000901"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HAM3417164.1"
                     /translation="MLENLATEERNEKTIDLDTLSPKEILAVMNEEDLTVPIAIKKVL
                     PQIELIVSGVISCFQKGGRLIYLGAGTSGRLGVLDAAECVPTFGVSKEQVIGLIAGGE
                     KAFVAAIEGAEDSKILGENDLKQIKLTANDFVIGIAASGRTPYVIGALDYAKSVGAKT
                     GAISCNANAKISAHADIAVEVVTGAEILTGSTRLKAGTAQKLVLNMISTASMVGIGKV
                     YKNLMVDVLPTNKKLEERSKRIIMEATEADYETANKFYEAAEKHVKVAIVMILTNSTK
                     EIALEKLSEAKGFVRNTIQK"
     gene            14672..16120
                     /locus_tag="IBJ56_000902"
     CDS             14672..16120
                     /locus_tag="IBJ56_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HAM3417165.1"
                     /translation="MTKEAEIGKQIFIHVGGMENVSRIAHCMTRVRLGIVDSDLVDVA
                     GLKKVPGVIGVVEDDTLQIIVGPGVVNKVAGAMAEMAGVKIGETIQENLDSGTKTGKE
                     LVEEKASKTKAELKAKQNNSSGFKRLLKSISNIFVPLIPGFVGAGLIAGIAAIISNNI
                     TAGNLDAAVWTQYIDILGVINKGIFAFLAIYVGINTANEFGGTPVLGGGIAGITLLSG
                     LAEGHTITNIFTGDPIVAGQGGIIGVLLAVWLMCVLEKNLRKIIPNAIDIIFTPTLVL
                     LIIGLVTIFLIMPFAGLVSDGLVNGINWVIEVGGVFAGFVLGTLFLPMVMFGLHQVLT
                     PIHVEMIAQNGYTILLPILAMAGGGQVGAAIALWIRCRKNKPLVNMIKGGLPVGILGI
                     GEPLIYGVTIPLGKPFLTACLGGGIGGAVIGYFGNVGAIAIGPSGVALIPLIANNEWL
                     SYVIGLIAAYLGGFILTYFFGTPKDAMNSVEL"
     gene            16861..17610
                     /gene="rpsB"
                     /locus_tag="IBJ56_000903"
     CDS             16861..17610
                     /gene="rpsB"
                     /locus_tag="IBJ56_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HAM3417166.1"
                     /translation="MPVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQ
                     KTVKKVDEAFNFMREVASDNGTILFVGTKKQAQESVRDEAIRSGQYFVNHRWLGGTLT
                     NFETIQKRIQHLKKIERMEADGTFEVLPKKEVVLLKKEQEKLERFLGGIKDMKGLPDA
                     LFIVDPRKERIAVAEARKLHIPIIGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMA
                     DAIIEVNQGEELTEAEVAPVEEKATEETTEA"
     gene            17690..18574
                     /locus_tag="IBJ56_000904"
     CDS             17690..18574
                     /locus_tag="IBJ56_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HAM3417167.1"
                     /translation="MANITAQMVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREK
                     GIAKAAKKSDRVASEGMTHVISNEKHAVVLEVNAETDFVAKNDNFQQLVDALAKQILA
                     VRPDTLEDALKTEMPNGQTVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMN
                     GRIGVLTLLEGTTDTTVAKDVAMHIAAINPKYISREDVSTEEVEHEKEVLTQQALNEG
                     KPANIVEKMVEGRLKKYLSEISLEDQPFVKNPDITVGDYVKQSGGKVVSFVRFEVGEG
                     IEKKEDNFVEEVMSQVKK"
BASE COUNT         6406 a         3401 c         3789 g         5038 t
ORIGIN      
        1 tttctgggcc aaatatcaaa ggaccgatgt tcttaaaatc gataataaag gtctaatggc
       61 ttataacgca gatgtaaatg gtgcggacca acttaaaatg tctattcgtg aatcagaaaa
      121 taattataaa gaaattactt tatttgattc tgttcctgaa attttagcaa attcttctcc
      181 ttatatattt atggaagatc gtggcgatgg gaatgtgttt gtggtcatgt caacccccac
      241 cacatggtat atcgcgcttg ttaatatcgc gtcagaacaa gtagttgaga cgaaaaaaat
      301 gacgatgaac tcctctacaa cgctaaacag tgtgatttac agtgaaggaa aaggtctgct
      361 tttaggtggt agtacacacg cagaagaaag cattttcggc agtgagccat tgaataaaaa
      421 taacggatat tatttagcgc ttggaaatga tttgaacgta acggatagcc agattttaag
      481 aacgaatcaa cataattcat tgaccactat tattaatggc gtcggcaata aagtagatgg
      541 tttctttagc tatgacggat taaataatga tggatatatc caaaatgtag agtacccgaa
      601 cacctatgat gtgaacccga atggagcgat gatttttgca gaatttaatt tgcaaccagc
      661 tccagtgctt gatacaggta atccaatttt agcattttat caaggggaac gtcgtgcaga
      721 ttttgatgaa ctggaagggg tgaaagcata ctctggaatt gattcatcag atataacaaa
      781 atctatcact aaaaatacgt ttgatttata tactgtaggc gtacaacagc aactttatca
      841 aattgaatat ttgccaggta gtggaaataa aaccactggt acacgaaata tccaattgct
      901 tcacccactt gagaccccaa aactagagaa aagctacgca gatagccatg gagcttttaa
      961 agttggtgaa gtagttcctg caaatgctat tcatgcattt aatggtttag atagtgctaa
     1021 caatgtgact tatgtagtta ccgcagtaga tgatgagaaa ataactgtag atgcttcaat
     1081 taagcgaaca gaaggaacga aaacagctgt aattagtaag gaaattacac ttatgacttc
     1141 gacagctgat gaaactgcag taatcgatgt gacgagtgtg gctctagcag ctgggaagta
     1201 tacatcctta acagatgttc gaagtgaagg gcattttcat atttatgcag aaaccatgga
     1261 taacgtgtcc atcgatccta aatacgttaa actaacagaa gaccctgaaa acccagttga
     1321 ttggaatgcg ccaggtgttt attatgtgac tgcatcactt gacccggcga gtggatatac
     1381 agcgaaagat gtgaaagtaa gtgtcgctgt agttgatgtt ggaagtccga aagttatttc
     1441 tgtaaacatg aaaccgtaca atccaacaac cgctcttgtc gttgcggaag atgatattaa
     1501 tggcgcaggc gtatataaaa tcaactgggc aattaaagac gcgaatggac ttattatcca
     1561 acaaggtgtg gaagagagtg gtgctaccat tcgagttcaa acgccagttc caattgatct
     1621 ctctacattg aatgatggca attatacctt gtcagtatca gcggctgaca gaattggtca
     1681 tacatcagaa gcttcagaaa aagcgttcac agtagacaga caagcgccag ttgtgacagc
     1741 tgacgacaag atcacgtatg aaataaacac caagaaaaca gaagagcaat ttttaaacga
     1801 tgtaaatgta aaaacggaag ccggagcggt gattaaaacc aattttgata cgatggtgag
     1861 aatggattcg ccaggcgatt atacggtttt agtggaagct accgatgcag cgggcaacca
     1921 atctgatccc atttatgtca ttgtaacagt agaagatacg gtagcaccga ttataagtgc
     1981 agacgaagcg attagttata accagggaaa tacacgaaca gaagcacaat ttctggctga
     2041 tattcatgca acaacagatg aaccagcaac gattacaagt gattttgcgg atcaagtgaa
     2101 atttgataca ccaggagtct acgcagtcac attaaaggca aacgatatta gcggaaacca
     2161 agcaatacca agaacagtaa atgtcacagt taaagatgtc attgctccag taattacagc
     2221 agatgaagcg attatttacg aaaaaggcat aaccaaatct gctactgatt tcttaacaga
     2281 tgtgcatgct gctacaaacg atggctcggc aatcacctct aattttgcaa cggtagtaga
     2341 tttaaataca ccgggggatt acgatgtcac acttaactcg acagatgcag gtggcaataa
     2401 atctgaccca atcaccgtaa cagttaccgt acgtgataca acaccaccag ttattacagc
     2461 agatacaact atcacttacg aaaaaggaac cacgaaaact gcagctgcct ttttaacgga
     2521 tgtaaatgca acaacgaatg acggctcagc agtaacttct aacttcaacc caaatagttt
     2581 gaagcaagta gggacttatc aagtgacgtt aagcgctatt gatgaaaatg ggaactatgc
     2641 tttgccagtc aaggtaactg ttattgtgca agatacgcaa aaacctgtaa tatcatctag
     2701 tgccacaagc attacgtatg aacgcggcga aaagaaacaa gaaacaggat tcttcctaga
     2761 tttagctatt aaaacggatg acggcacacc agttacaagt gattttgata cagcggtaaa
     2821 tctggataca gcgggaagtt atactgtgac gctaaacgca gaagacgaaa gtggcaataa
     2881 agcagatcca gtcactatta ccgtcattgt cgctgataca gaaaaaccaa ttatcacagc
     2941 agatacaacg ataacctacg caaaaggaac aaccaaaact gctgctcaat ttttaacaga
     3001 tatccacgca acgacgaatg atggatcaac catcacgagc aattttgacc caactgtcct
     3061 tacgcaagaa ggaacttaca aagtcgtatt aaatgcaaaa gatgatagca acaacgaagc
     3121 agatccagta actgttacta tcaccgtggt agatacaaaa ggaccgatta tcaatgcatt
     3181 aaatacaatc acctatgaaa gaactatcaa taaaaacgaa gcggattttt tagcagatat
     3241 tgaagcaact acagatgatg gctctacaat aacaacggat tttaatagta aagatcttga
     3301 tacggttggt acctacacag tcacattaaa tgcagaggat gcaagtggca ataaagcaac
     3361 gcccgtaaaa gtgacaatga aagtagaaga taacattcct cccatcatca cagctgacca
     3421 atcaatcact tacgaaagag gcattacaaa aacagagcaa gctttctaca ccgatattaa
     3481 tgccgcaaca agtgacaaca gcgcaatcag ctctgatttt tcgaaaatcg atttaacaaa
     3541 aacaggaaat tatgaagtct tactccaagc aacggatcaa agtggaaaca aagcattgcc
     3601 acttaaaatt aatgtgctag ttcaagatac tatcgctccg gttataaaaa caaccagccg
     3661 agaaataaca aacgagcgtg gtgtaccaat gaccgaacaa caactacttg caagaattgg
     3721 cgccaataca gatgacggtt ccaaaataac caccgattat aaccctgcaa ttgttaacac
     3781 atcaggggat tatctagttc atctgtatgc tgttgatgcc gcagggaacc aagccacacc
     3841 tgtagaaatt actattcatg taaaggatac taccgcgcca atcattacgg cagataagaa
     3901 aattagttat cctgttggaa cagataaaac ggtaacggaa tttttacaag acattcatgc
     3961 tacaacggac gatggttcta aaatcacgac agatttcgat ccaaatatgt tgaaaacaaa
     4021 aggaacatat actatccact taaatgcagt agatgcagac gggaataaag ctaagacaat
     4081 cgatgtaagc ctcacagtag aagagaaagt gacgccgccg acaccaccga caccaccgac
     4141 accaccgaca ccagatgatg gtggaaataa tacgaataac ggcagcaatg ggacaaatga
     4201 tagaaacgcc aatataacgg taaatcctac caagcaaaat actaccgcta caaatgaaag
     4261 catcccagca ttaggtgata caacatcaac tattccagtt atcgtaggta tgttcctttt
     4321 agccacttca cttgttctta ttagacgcaa ataaaaaaag ctagcgacaa acatgtcgct
     4381 agctttttag gctgttttag cttttttctt ttgtttaggt ttttttgact ttctggaaat
     4441 aaaacgaacg aggctaataa taagagatac aacatattca ccgaatgaac cgatgaatat
     4501 ggcaatagct atttctgttt gggacatccc gccgccgtaa aaactaatga aaaataccac
     4561 accacttgca attagtccca tagttgctag gaaatattta aaccaatata aacgaaaaac
     4621 aaaatcaaat aaacataaaa ctgctaaaaa tccaagaaaa ataatcaagg atagtggaat
     4681 taaactcata gttacaatct cctttagtta agtaaaacat cttttttatc catctatcat
     4741 accacaggtt acaaataatg ataagtgaaa aaataatgaa cgctaatttt cagctaattt
     4801 tagcggatag atgactgttt tatcataaca caaaaccgaa ttattattgc atctggcacc
     4861 agtttatggt attctatctt agaattaaaa tttatctctt atccagagcg gtagagggac
     4921 tgaccctttg aagcccagca acctacacat ataagtgaaa ggtgctaatc tgttgcagga
     4981 gtattatctt ctgaacgatg agagcaaagg tataattata gcctttctct attcgtgcgc
     5041 gttttgtgca aaatagagag aggcttttta tatgagacgt atttggagag aattgaagga
     5101 ggaaaataaa ttggctaaga accgtcatct atttacatca gaatcggttt ctgatggaca
     5161 tccagataaa attgcagatc aaatatctga tgcaatttta gatgcaatta tttcaaaaga
     5221 tccggacgca cgtgtcgctt gtgagactac tgtgacaacg ggtttagtat tagtagcagg
     5281 tgagattacc acctctgttt atgtggatat tcctaaaatc gtgcgtgata caattaaaga
     5341 aatcggctat acacgtgcaa aatatggttt cgatgcagaa acgtgtgccg ttttaacagc
     5401 gattgatgaa caatccccag atattgcgca aggagtcgac gaagcactag aatcaagaag
     5461 tggtaaggaa atcgatgcgg ctattgaagc aatcggagcg ggagaccaag gattaatgtt
     5521 cggttttgca acagatgaaa cagaagaatt aatgccactg ccaatctttt tagcacatgg
     5581 cttagcacgt aagttaacag aattacgtaa aacaaataaa ttagactact tgcgtcccga
     5641 tgcgaaaaca caagtaacgg tggaatacga tgaatttaat caaccagttc ggattgatac
     5701 aattgttgtt tcgacgcaac atcatccgga cattacgcaa gagcaaatcg caaaagactt
     5761 gcacacgtac cttttcccag aagtgattga tgcctctttc ttagatgaag atacgaaata
     5821 ctttattaat ccaactggtc gctttgttat tggtggtcct cttggcgatg cgggcttaac
     5881 tgggcgtaaa attatcgtgg atacatacgg tggttatgcg cgtcacggcg ggggagcgtt
     5941 ctccggtaaa gatccgacca aagttgaccg atcgggcgct tatgctgcaa ggtatgtagc
     6001 taaaaatatc gttgctgcag gacttgctaa aaaagtagaa gtacaagtcg cgtatgctat
     6061 cggagttgct cgtccagttt ccatttcgat tgacacatat ggaacaagtg actattcaga
     6121 acaagaatta attgatggcg ttaatgagct atttgattta cgcccagctg ggataattca
     6181 tatgcttgat ttgcgtcgcc caatttatcg tcaaacagct gcatttggtc attttggccg
     6241 tagcgatctt gatttacctt gggaaagaac cgataaagca gaagccttaa aaaaattaat
     6301 cgtaaaataa gcttaaccga acatttcttg taaggaatgt tcggtttttt tctttcctaa
     6361 acagtgcaaa gaaagtctag ttatgatatg atagacgttg tgaaaaaaag ataaaatgat
     6421 tatctatata gaggagaaat gttaccatgt gtggatttgt aggatgcgta catgaccgca
     6481 ttacagaaat tactggcgct gataaagaaa cctttagaca aatgaacagt atgattacgc
     6541 accgtgggcc agatgatgaa ggatacttca cagatgatca cgtgcagttt ggtttccgcc
     6601 gtttaagtat tattgatgta gaaaacggtc atcaaccgtt aacgtatgaa aatgaacgtt
     6661 actggattat ttttaatgga gaagtttata actatgtgga actccgtgag caattagttg
     6721 ctgaaggaat gacatttgaa accgaaagtg ataccgaagt aattatcgct acatatgcga
     6781 aatacaaaga aaaaacagca gaacgtcttc gtgggatgtt tggtttcgtt atttgggata
     6841 aacaagaaga acttgtttac ggcgcacgcg acccatttgg cattaaacca tttttctatg
     6901 cagaagaaga tggcaaattg ttcatgggtt ctgaaaagaa atccattcta catgctttaa
     6961 aagaaaaaga attggatgaa gtttcattac aaaactatat gacttaccaa ttcgttccag
     7021 aaccagattc cttaactaaa aatgtaaaac gtttagaacc aggacatcag ttcacgaaga
     7081 aaattggtca accaatggaa attactactt attggaaagc atcttttgca ccagtaacta
     7141 aatcagaaga cgcatggatt aaagaagtgc gtgacgtaat gtacgattct gtaaaaatgc
     7201 atatgcgctc tgatgtacca gttggttcat tcctatctgg tggtattgat tcatcgatta
     7261 ttgctgcgat tgctaaagaa tatcatcctg caatcaaaac attctctgtt ggttttgaac
     7321 gcgatggttt cagtgaaatc gatgtcgcaa aagaaacagc agacaaactt ggcgtagaaa
     7381 acattagtta tgttatctca cctgaagaat atatgaaaga attaccaaaa attgtttggc
     7441 atatggatga tccacttgct gatccagctg ctattccgct ttacttctta tcaagagaag
     7501 cgcgcaaaca agtaacggtt gcattgtccg gtgaaggtgc agatgaactt ttcggtggtt
     7561 ataacattta taacgaaccg aattcccttg cgatgtttaa caaaatgcca agcgtattta
     7621 aatcaatgct aaatagcgtg gcgcgcatta tgccagaagg tatgcgtggt aaaagtttct
     7681 tagaacgtgg aaccactccg atggaagaac gctatatcgg aaacgccaaa atgttcacgg
     7741 aaaaagaaaa acaaatttta cttccaaaat atcaagctgg tcatgactat acgaacatta
     7801 cagatccatt ttatgcagaa acaacgaatt atcatcctgt agaaagaatg cagtacattg
     7861 atattcatac gtggcttcgc ggcgatattc ttctcaaagc tgaccgcatg acgatggcta
     7921 attcgctgga agtccgtgta cctttccttg ataaagaagt gtacaatgtg gcaagaaata
     7981 ttccagatac aatgaaaaca accaatggaa caaccaaata tatcttacgt aaagcggcag
     8041 caacatttgt accagaacac gtacttaacc gccgtaaact aggattccca gtaccaattc
     8101 gtcactggtt aaaagacgaa atgaacgctt gggttaaaaa catcattaaa gaatcaccaa
     8161 cagatcattt aattaacaaa caatacgttc taggattact agacgatcac tgtgccggta
     8221 aattcgacta cagtcgtaaa atctggacag ttgttatttt catgatttgg tatgatgtat
     8281 acgtagcaga taaatacgat tttggaaaat aaaagaaaac ctagacaaag ctattaatta
     8341 gcctgtctag gttttctttt ttcgatgata atgacgaatg gggcatcatt tttttgatta
     8401 ataaattgat aagataaaac gtggaaatct tgttgtggga ttgcttcaca aaaagtcaca
     8461 acagcatctt tttcgatttt tccagcaggg tggccgtgat atataacgag aataatgacg
     8521 ccaccaactt cgagcagctg cattaaatga ccaatgcttt ctagcgtcga atcagcggtt
     8581 gttgtaattt ctttgtcgcc acctggtaaa tatccaagat taaaaatagc ggcgcgaaca
     8641 ggtctggatg tgtacgcagg gatacgtgca tggctagcgc aaacgagctc cacttgcgaa
     8701 gaaacacccg cattttctaa acgagccttc gtcgcatcaa cagccatttg ttgaatatca
     8761 aatccaagta catgcccatt aataccaaca agttccgcta ataaaagcgt atcgtgtcca
     8821 ttaccacaag tggcgtcaat cacataatca ccaggacgaa ctacttttcg tagcgtatca
     8881 tgagcgaagg ggagaatgcc tcttaaattc attcagaaat cacttccaca ggttgatagt
     8941 gtttcccttg ccagctatct cttcgaacaa gttctgcatc aatcgcattc aacacttcaa
     9001 acttatttaa actccaaaca gggccaatta aatcatctac gccaccatca ccagtaatcc
     9061 ggtgaataac catctcaggc ggtaagatct ctagttgatc agcgactaag tttacatagc
     9121 catcccgagt taaaaattct aagtcacctt ttttataatc ttctaccatt ggcgttcctt
     9181 ttaataaatg gagcaaatgg attttgatac catccacgcc actttcgact actttccgcg
     9241 ttgtttccat catcatttct ggtgtttctt ttggaagacc gttaataatg tgggtacaaa
     9301 tccggatatt gtgcttttgc agtttgtgca ctccttctag ataacaatca taatcatgcg
     9361 cccggttgat taagcggcca gtctcatcat gagcagactg caatccaagc tccaaccata
     9421 aataagtacg ttcattcaac tcagctaaat attccaccac atcatctggc aaacagtccg
     9481 gtcttgtcgc aatcgaaagc ccaactacac ccggctcatt caaaacagtt tcaaatttct
     9541 cacgtaactc ggcaaccggt gcatgtgtat tcgtgaaagc ttggaaataa gcgatacatt
     9601 tcccgtcttt ccatttcgtt tgcatcttgt cgcgcacttg ctggaattgt acttttaaat
     9661 caagcgctcg gttgccagca aagtccccag aaccagccgc gctacaaaat gtacaaccac
     9721 catgcgctac cgtaccgtca cgattgggac aatcaaagcc gccatcaagc gccactttgt
     9781 atgtcttttg cccaaattct tctcttaagc agtagttcca tgtatgatat cttttattat
     9841 cattgctata tacaaatgga ttcgtttgtt tcactagttt tagactcctt caaatgaaat
     9901 tctccattca ttttagcaca ttttgttagg aaagttagat aaatcttcag agcgcttgct
     9961 aaaaaaatga aattcagcta caataagact aatgaatttt gcgaaaaagc gatgaattgg
    10021 agtagtaatc tgcatatttt gatgtgaaga gagctgacgg ttggtgcaag tcagtcacaa
    10081 aatccggatg aacttaccat ggagcttggg tgtatctccg ttttccgcgt taaggaattg
    10141 ataagttgag tggtcaaaca ctaatgtggg tggtaccgcg ggagaagcat ctctcgtccc
    10201 atggcgataa gccgttggga tgtagggatt tttttgtagc caaaattcga tattttaagg
    10261 aaaagaggat gagtaaagtg acatttaatc acaaaaaaat ggaaccaaaa tggcaacaat
    10321 attggagtga acataacact ttcaaaacaa cagaagataa aaataaagat aacttctatg
    10381 cactagatat gttcccttac ccatctggag caggtcttca cgtaggacat ccagaaggtt
    10441 atacagcaac agatattttg tctcgtatga aacgaatgca agggaagaac gtccttcatc
    10501 caatcggttg ggatgctttt ggtcttcctg cagagcaata tgcaattgat actggtaacg
    10561 acccagaaga atttaccgca ctgaatattg ccaactttac tcgccaaatt aaatcacttg
    10621 gtttttccta cgactgggac cgtgaaatca atacaacaga tcctgaatat tataaatgga
    10681 cacagtggat ttttgaaaaa ctatatgaaa aaggtttagc ttatgaagcc gaaatcgctg
    10741 taaactggtg tccggcactt ggtacagttt tagccaatga agaagttatc gatggcaaaa
    10801 gtgaacgcgg tggcttccca gttttccgca aaccaatgcg tcaatggatg cttaaaatca
    10861 ccgcgtacgc agatcgtttg ctagatgatc ttgatctagt ggattggcct gaaaatatta
    10921 aagatatgca acgtaactgg attggtcgtt cagaaggcgc agaagttact tttaaaatta
    10981 aagatagcga tgaaacgttt aatgtcttta ccacacgtcc agatacactt tttggcgcaa
    11041 catataccgt ttttgcacca gaacacgaac ttatcgaaaa aatcacaaca ccagaacaaa
    11101 aagaagcagt tgaagcttat aaaaaacaag tagaacttaa aagcgaactg gaaagaaccg
    11161 accttgcaaa agataaaaca ggtgtcttca caggagctta tgcgattaat ccaatcaacg
    11221 gcgaagaagt gccaatttgg attgcggact acgtgttgat tcaatatgga acaggtgcga
    11281 ttatggccgt accagctcac gatgaacgtg actttgaatt tgcgcaacaa tttggtttga
    11341 atattcgtcc tgttcttgaa ggcggcgacg tgacaaaaga agcattcact ggcgacggac
    11401 cacatattaa ctccgatttc ttgaacggac tagctaaagc cgaagcgatt accgctgcaa
    11461 ttgattggct agaaaaagaa ggcatcggta gccgtaaaat cacgtatcgt ttgcgcgact
    11521 ggttgttcag cagacaacgt tactggggtg aaccaattcc agttattcac tgggaagacg
    11581 gggaaacaac gcttgtacca gaagacgaac taccactact tctgccaaaa gcaacagaaa
    11641 tcaaaccatc aggaacaggc gaatcaccac ttgctaactt gcatgactgg gtaaacgtaa
    11701 cagacaaaaa cggtcgaaaa ggtcgtcgcg aaacaaatac aatgccacaa tgggctggct
    11761 caagctggta tttcttgcgt tatatcgatc caaataacag cgaagcaatt gctgacaaag
    11821 aaaaactagc agaatggctt ccagttgacg tttatatcgg cggggcagag catgcagtgc
    11881 ttcaccttct ttatgcacgt ttctggcata aattcttgta cgatatcggt gtagttccaa
    11941 caaaagaacc tttccaaaaa ctatttaacc aaggtatgat tcttggcgaa aataacgaaa
    12001 aaatgtccaa atcaagaggt aatgttgtta accctgatga agtagtagaa aaatacggcg
    12061 cagacacact tcgcttgtac gaaatgttca tgggaccact agaagcttcg attgcatgga
    12121 acgaaaatgg actggaaggt gcacgtaaat tcctagaccg catctggcgc ttgctagtaa
    12181 ctgaagaagg cacactcgct gaaaaagtga caactgatgc gaatgctaac ttagaaaaag
    12241 catatcatca tatggtgaaa acagttacca accattacga aaacctgcgt ttcaataccg
    12301 ggatttcgca actgatgatt ttcatcaatg aagcatataa acaagatacg attccaaaac
    12361 aatatgtcga aggtttcgtt caactcttgt caccaatcgc accacacctt gcagaagaat
    12421 tatgggaaat cctaggtcac accgaaacaa tcagctacgt agcttggcca acatacgacg
    12481 aaacaaaact agtagaagat gaagtagaaa tcgtacttca agtaaacggc aaagtaaaaa
    12541 gcaaaatcac cgttgccaaa tctctcgaaa aagaagaact agaaaaaatt gcacaagaag
    12601 acaacaaaat gaaagaaaac ctagaaggca aaacaatccg taaagtgatt gtcgttccag
    12661 ggaaacttgt aaatattgtt gcgaactaat aatggaaact gctggcttct ggctggcagt
    12721 tttatttttg actaattttt tggtataatt acggaaaatg gaatggagaa aagttaatga
    12781 gtaatggtag tattatcaat cgaatagaag gtattttaaa tgatttgccg aagtcagaga
    12841 aaaaaattgg ccaagcagta ttagcaaatc cagaatttac aactactgca tcgattcata
    12901 aactagctca acaagcagat gcaagcggtg cggccgttat ccgtttctgt aaatcaatcg
    12961 gacttcaaag ttttccagaa ctaaaaagac aattatcatt agatttggct caaccgcaaa
    13021 agaaaggcta ttatgatatt gaaccaaatg aagattttca taccatcaca gaaaaactag
    13081 tttctaacat gattcaaacg atgaacgata cggctagcca actagatgaa gccaaagttt
    13141 tagaggcatg cgaattactc ggcgaagcag atactattta tacatacggg gtcggggctt
    13201 cttggttagt agcagaagat atttcgcaaa agtggctgcg tgcagggaaa catgttttag
    13261 ctacgcaaga tgcacatgtt ctagcaatgg cttttgcaac ggggaagaag aaagccgttt
    13321 ttattgctat ttctaacagt ggagaaacat cagaagtctt gcaactcgta gatcaagcca
    13381 aactgaacaa cgtcattgtt attagtctta cacgttttgg tagcaataag ctgaaggaaa
    13441 aagcagattt atctttagaa acttctcgtg ctccagaagc tgaaattaga agtaccgcaa
    13501 caagttcaag acaagcgcaa ttgctagtaa ttgacatttt attttactat tatgcatccc
    13561 atcactacga cgaaatgatt caacaaatta aacattctcg agaggccacg aatcgtttta
    13621 gagaataata gaagataggt agtagcttaa taattaaagc tactgcctat ttttttacta
    13681 gcaattataa ataaaaattt taatattaaa attatatatt gaaattttat ttcatttata
    13741 ttatactgtg ttggaaggag tggttaaaat gttagagaat ttagcaacag aagaacgaaa
    13801 tgaaaaaacg attgacttag acacactttc tccaaaagaa attttagcag taatgaatga
    13861 agaagattta acagttccaa tagctataaa aaaggtctta cctcaaatcg agttaattgt
    13921 aagcggtgtc atctcgtgct ttcaaaaagg tggccgtttg atttatcttg gtgccggaac
    13981 aagtggaaga ttaggagtac ttgatgcagc tgaatgtgtt ccaactttcg gggtctcaaa
    14041 ggagcaggtc attggcttaa tcgcaggtgg tgaaaaagct tttgtagctg caatagaagg
    14101 tgcggaagat tcaaaaatac ttggcgaaaa cgacttaaag caaattaagt taactgcaaa
    14161 cgattttgtt attggtattg ctgcaagtgg tagaacgcct tatgtaattg gcgcacttga
    14221 ttacgccaaa tctgtcgggg ctaaaaccgg agcaatttct tgtaatgcta atgcaaaaat
    14281 ttcagcgcac gccgatatag ccgtagaagt tgtgaccgga gcagaaattt taacaggttc
    14341 tactaggtta aaagcaggaa cagctcagaa actagtatta aatatgattt caacagcttc
    14401 aatggttgga attggaaaag tgtataaaaa tttgatggtg gacgttttac caacaaataa
    14461 aaaattagaa gagcgctcta aacgaattat tatggaagct acagaggctg attacgaaac
    14521 agcaaataaa ttttatgaag cagctgaaaa acatgtcaaa gttgccattg tcatgatctt
    14581 aaccaattca accaaagaaa tagcgttaga aaaattaagt gaagcaaaag ggtttgttcg
    14641 aaacaccatt caaaaataag gagctggaat aatgacaaaa gaagcagaaa ttggaaaaca
    14701 aatatttatt catgtcggtg gaatggaaaa cgtttcaaga attgcacatt gtatgacacg
    14761 agttcgattg gggatagttg atagtgacct tgttgatgta gctggattaa aaaaagttcc
    14821 gggtgttatc ggtgttgtag aagatgatac tttacagatt attgttggac caggagttgt
    14881 gaacaaagtg gccggcgcaa tggcagaaat ggctggtgtt aaaattggcg aaacgattca
    14941 agaaaatttg gatagcggca caaaaactgg taaggaatta gtcgaagaaa aagcatccaa
    15001 aacaaaagct gaattaaaag caaaacaaaa taattcatct ggttttaaaa gattactaaa
    15061 atcaatctct aatatttttg ttccactaat tccgggtttt gttggagcgg gattaattgc
    15121 tggtattgca gcaattattt ctaataatat aacagctgga aatttagatg ctgctgtttg
    15181 gactcaatat attgatattt taggagttat taataaagga atatttgcct tcttagctat
    15241 ttatgtaggg attaataccg cgaatgaatt tggtggaaca cctgtactcg gtggtggaat
    15301 cgctgggata acattgcttt ccggattagc agaaggacat acaattacaa acattttcac
    15361 gggggatcct atcgtagccg gacagggtgg gattattggc gtattattag cagtttggtt
    15421 aatgtgcgta cttgaaaaaa acttgcgcaa aatcatcccg aatgcgatag atattatttt
    15481 tacgccaacg cttgtattac ttattattgg tttagtaact attttcttaa ttatgccttt
    15541 tgcaggactt gtatcagatg gtttagttaa tggtattaat tgggtaatcg aagttggagg
    15601 agtattcgca ggttttgtgc tagggacgtt attcttacca atggttatgt ttgggttaca
    15661 tcaagtttta acacccatcc atgtagaaat gattgctcaa aatggttata ctatcttact
    15721 tcctattcta gctatggcag gtggcggaca agttggtgca gcaatcgcgc tttggattcg
    15781 ttgtcgtaaa aataaaccac tagtaaatat gattaaaggg ggccttccgg ttggaatttt
    15841 aggtatcggt gaaccattaa tttatggggt aacaatacca cttgggaaac cttttcttac
    15901 agcttgtctc ggaggcggta tcggtggggc agtaatcggc tactttggta acgtcggagc
    15961 aattgcaatc ggcccatcag gagttgcact tatcccacta atcgcgaata atgaatggct
    16021 ttcttacgtc atcggattaa ttgcagcata tttaggtgga ttcattttaa cttatttctt
    16081 tggtacacca aaagacgcaa tgaatagcgt agaattgtaa gaagtaattg ctgttccacg
    16141 gaaatttgta cacattgaag tgaattgatt agagaagctt cgaaattagt tttattacta
    16201 atttcgaagc ttttttacgc agttagcata acaaataatg aaaccgtttt gatagtatta
    16261 aagtaaaacg gggtgtcaac gacgaaaaac aatatagatt acattaaaac agtacaaaac
    16321 ataaaaagtt tttttgatga atttcaatat ttggtttttc tgctaggttc taaaataaaa
    16381 taaagctcaa tacagacgga ttaatagaaa taaaagtgtt aacaggcaat aaaataagtt
    16441 tgactcctat aggtcactta gttcaatttt acttgggaat attaaatgac atgaaagcac
    16501 tacatcgctt tattttaatt aaatgttata ttgagataaa caaaaagata ttttaacgat
    16561 gttggaaatg ccttatgaaa ttgcgcaatt taaaagaata aaaaaacatg ctgttcttag
    16621 tttagccgaa aagcttgaaa tgattgttga aaaaaattag ttatcgaaga aagaagatat
    16681 gtaccacggg ttgcatattt cctgttttta tggtatatta ggaaacggtg ttaaatcaca
    16741 cacgcacggt gacagactga gaaggtgctt aacgacttgt tcgcttaagt ttttcagctg
    16801 gttgatccat gcggagggcg gttatccgca aaaaataaac caataggagg gaataacaca
    16861 atgcctgtta tttcaatgaa acaattactc gaagcaggag ttcacttcgg ccaccaaact
    16921 cgccgttgga acccaaaaat gaagaaatat atcttcacag aaagaaatgg tatttatatc
    16981 attgacctac aaaaaacagt gaaaaaagta gacgaagctt tcaacttcat gcgtgaagta
    17041 gctagcgaca acggaactat cctgtttgta ggaactaaaa aacaagctca agaatccgtt
    17101 cgcgacgaag ctatccgttc tggacaatat ttcgtgaatc atcgttggtt aggtggtact
    17161 ttaactaact ttgaaactat tcaaaaacgt attcaacacc ttaaaaaaat cgaaagaatg
    17221 gaagcagatg gaacttttga agtccttcct aaaaaagaag ttgtccttct taaaaaagaa
    17281 caagaaaaat tagaacgctt cttaggcgga atcaaagaca tgaaaggtct tcctgatgca
    17341 ttattcatcg ttgacccacg caaagaacgt attgcggttg cagaagctcg taaacttcat
    17401 attcctatca tcggtattgt tgatacaaac tgtgatccgg atgaaatcga ctacgtaatc
    17461 cctgcaaatg atgacgctat ccgcgcggtt aaacttttaa ctgctaaaat ggctgacgct
    17521 atcattgaag tgaaccaagg ggaagagtta acggaagcgg aagttgctcc tgtagaagaa
    17581 aaagctacag aagaaactac tgaagcataa gattttattt gaaactttca aggtgataag
    17641 gcactattct tatcaccttt tttaaagaga aaaattggag ggaaaataaa tggctaatat
    17701 tacagctcaa atggtaaaag aattacgcga aaaaactggt gctggtatga tggattgtaa
    17761 aaaagcgctt gtagaaacag aaggagatat ggaaaaagca attgactatc ttcgtgaaaa
    17821 aggaatcgct aaagctgcga aaaaatctga tcgtgttgct tctgaaggta tgactcatgt
    17881 aatcagcaat gaaaaacatg ccgtagtact tgaagtaaat gctgaaacag atttcgttgc
    17941 taaaaacgat aacttccaac aattagttga cgctttagct aaacaaattc ttgcagttcg
    18001 tccagatacc ttagaagatg cgcttaaaac agaaatgcct aatggtcaaa ctgttcaaga
    18061 ctacatcact gaagcaatta caaaaatcgg tgaaaacatt tcccttcgtc gttttgaagt
    18121 aaaagaaaaa gcagacaact ctgctttcgg tgaatacatc cacatgaacg gacgtattgg
    18181 tgttcttaca cttcttgaag gaactactga tactactgtt gcaaaagacg ttgcaatgca
    18241 catcgctgca atcaacccta aatacatttc tcgtgaagac gtttctactg aagaagtgga
    18301 acacgaaaaa gaagtattaa ctcaacaagc gttaaacgaa ggcaaaccag ctaatatcgt
    18361 tgaaaaaatg gtagaaggcc gtttgaaaaa atatctaagc gaaatttcct tagaagacca
    18421 acctttcgtt aaaaacccag acatcactgt aggtgactac gtgaaacaaa gcggtggtaa
    18481 agttgtatca ttcgtacgtt tcgaagtagg cgaaggaatc gagaaaaaag aagataactt
    18541 tgttgaagaa gtaatgagcc aagtgaaaaa ataaatccac tttaaattga ttttatatga
    18601 tatcaaaacc ccgtattttc ttaggagata cggg
//
LOCUS       DABQVC010000037        18176 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.037,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000037 DABQVC010000000
VERSION     DABQVC010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18176
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.037"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            187..528
                     /locus_tag="IBJ56_000905"
     CDS             187..528
                     /locus_tag="IBJ56_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417168.1"
                     /translation="MKKLQWLTNRLFATSILLITTLFIIPPTFAIADGSKVSFYEYIY
                     GAPFRWLTVISTTDKKGAFTEMFFSGNEGITIQWPNLMINFLLIFLAITIIFSLAKKL
                     YDKKNVKKDNP"
     gene            complement(595..963)
                     /locus_tag="IBJ56_000906"
     CDS             complement(595..963)
                     /locus_tag="IBJ56_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3417169.1"
                     /translation="MAFSIGEFSELVGIPSSTLRFYEKEGLITPDRDKNNLRIYSEED
                     ANWLKFLLHLKGAGLSVEELKQYTIWRAAGDSTISERLNMLKKKKVILEQEIEDLQKN
                     LDTVVRKIGIYEEKVKTRRV"
     gene            complement(1019..2002)
                     /locus_tag="IBJ56_000907"
     CDS             complement(1019..2002)
                     /locus_tag="IBJ56_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAM3417170.1"
                     /translation="MKKRQLGNTGLVTSELGFGCMGLNYHRGPAKDRKEMIEVVRTAM
                     DAGITMFDTAEVYGPYTNEELVGEALVGKRNHVQIATKGGFKINGLNNEVDSRPESIK
                     AAVEGSLKRLKTDYIDLYYIHRIDPSIPIEEVAGTIQNLKQEGKILHWGLSEASAKTI
                     RRAHKVEPLAAVESEYSIWWREAEKEIFPVLEELGIGLVAYSPLGRGYLTGKLDINAS
                     FNENDNRGGLPRFQKEAMEANQVLLDFMKEIADEQNVTTAQLAIAWILDQKPWIVPIP
                     GTTKQSRIKENIASTDIRFDDGARQKIADALSQIEIVGDRYSAAENKRIGK"
     gene            2393..3082
                     /locus_tag="IBJ56_000908"
     CDS             2393..3082
                     /locus_tag="IBJ56_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3417171.1"
                     /translation="MKYIDYHDYMHKDAIIYAYLQNNFPYIRKRIKAWESFTLDREDI
                     LLVKSGAIFEEISGKKKGIARCFFSKSLIFPTRNQIVLKAFETSEICFINAETAFGKL
                     EKDQILSNFFLQIAEKNEEDMRRQAFLGTENSKNKIISTLNFLLENNKSNNKTPIFPE
                     WLQINVLAQLANCSISTISSTVNELHAEGILDIKSSPWKLKGREKRIEILENEHQKIK
                     LNERKHKSNVF"
     gene            3159..9038
                     /locus_tag="IBJ56_000909"
     CDS             3159..9038
                     /locus_tag="IBJ56_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HAM3417172.1"
                     /translation="MKKNILVVMIVSVLAISAIVSAFFLMRDDAYAIETEGFTYSPKG
                     KVVDFSSEAKYNDTWINNEKTITDKKEMKPINLARTLFLKDGRIQFLGKSVAVKSASD
                     LIELPSKTSITESKGSYKAKSDSNKTLAQLPKGTVVKLAEGRYIILDNAYLKNKQGLN
                     KKLPKNVLVSIDENKKVTLMGDKTIEELGGDDAYIEMENNHYHFDLKKEMLVSQTAKE
                     TDIDIRSIKVEIDDNAEKRSLKTAKETANETTKDSTQKEPEKQSNDTSGQKTTQNNET
                     SEGKDNQTQGASGNNANGNANNNTARSNGTGGSDSGANGSQPGGTQNKPNEGDVNKAN
                     EIIKKLNEAENTNTFQVPIVDVNLTVKGQVATAKLKLTDASKRLNSLEAILYDSKNNI
                     VKKEKLNSTKANQNFTFNNLKYGETYQVVVQGSYKSASNKNQDTIFFRQTVEAKPVVL
                     TPKVTERGEDYMKAELTATELYGQIDKLVLKIKENNSNVTTSQKVTVDASQLTKDGQV
                     EVKFNSLSSAKEYIIEMEELIVDGKNVTDDSWYFISSTLKAKPTIEGINLSYSTDKGE
                     FVASPVNLIDRDESITSIRYVAYLEDDYKANGSNAKEYAYSVVDANQKKTAVKVGRTV
                     DMNDGSYIFVGYISGNNGQSDYTFATPASNSVIVGKKTKPTVEFSLKEAEQDKLTINY
                     EIFDADNTLLFDNLTHPTLKLYKSDAQGMYSGNPVATVDLTKKSDITNLLEFDGLESE
                     AYYVVVMTGSYNLDDGAGIMVDELIGQSSVFRTTEITKVNASFSLDSVDTTKATINVK
                     LSEAAVNLNDANLKIYEKKTNTLVKTIPLHGDFEKLMSDLGNSYPFKDLSINKEYLVK
                     IEDGYDSGMNHVPVEGQFIFKTKKEAPETDKVLLDYKASEMKLGGLAGIAATEKPLID
                     DYNAVSSITYSIYKADDLNTPLVEQEVSTAADFEKHVYFDLTNKLLGRGYSYVIKADV
                     VWNDNYEDHHIEINSDTIQIKKEKPTVEYEILSRTASEIKLNVYVEDEEESIVPGTLE
                     ITSTTGGNEQLQSGKNNVTLPLSSEGTTTIKTTGDYIITSGSSAISDIFMTKQLAALN
                     TTAPQVGAKIAMDASGKSMTIAPEPNAVAKTSVMRTKYDLKDAASSKPDYSITKSGPN
                     QFNTQNLNLPIGNIWFDNSYQLTLDMKMNYTENKIDNQNLANNYYLSIGNGASFVSSL
                     SGAVSTTNNVNSADVFKVTKASTDSEGNISGVTFKNIWTDKYIAYRNGILISNSETPD
                     SFKLIRQADGSYVPELSGRYVSFSVGLVTDEAAGSKIDLYSTQEKLEQVSEAISVKAL
                     EEPAISAENISVYDKRVKIDVIGEDKDNTTVKKDNKNELFVNVYKADGTTLVKSIRID
                     GLPTRDVSVTELSPDSDYVVKVEGKYDLLDGKGEKDKVYFSETIKTEKSLPSMTSTDY
                     SWNPAYGQRAIKGNIHFTDESSVLTNIEYRLYDAATISSNLSNLVALEQELGNKTPVA
                     TFDNMTNSPEFSIYNSSGAQNFVSGKTYVIAAYMKTSLTRAPIFLSDAKELYISPPSG
                     VSAPITLENVSTREATLKFSYNDPQSYFVGGTNKEFQYVLKNTTNGKEIKKGSFQGGN
                     TASWINTFEELEPATGYTLTISTQYDNLNGGLVRAWNTSFNFTTDDEYVTSNSLTIQL
                     DAGAKVVKLQAKEVKPGSTTIENIKMEFYELIDYGGNNEHNQLVETKNITLPSSYPAT
                     IAADFNVAGKKKNQSFLGKMIVTYRTPTNEVKTYEKTSNFITLQEDIAAGLKAFKSVR
                     ATNKTLEVKLDTPQVNLTDKGDYTYELKGENGEVIDTEKVAAEDISKTVSLSMEPTSD
                     YTLTVINPDNQPVALYQGNNEENNLKAEINKDSFTLMSNNTADAETTMTVTVEPKELT
                     AWQTVQSWFGKDFTETYNIQKDELDTGVKIDENYQDTKVTVEETKSGKNFGIIELEES
                     K"
     gene            9035..11344
                     /locus_tag="IBJ56_000910"
     CDS             9035..11344
                     /locus_tag="IBJ56_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417173.1"
                     /translation="MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVL
                     NNEQETLQFQKGNTLYRSWNSDQLIAKNDKEDTRNEIMESTILYLNKEALMFTKSVPV
                     IDTNGVSSKLKGRQVYQQTNSSYKYKNSEITENSIVKLANRQYYLNADATLYLGGKEI
                     KKVSKPLLLIDKTGSVTIYENKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLA
                     SFGGTDNEKIVVKEDKKKTAESAKEKESAKKTASNSSQSENESNQTTKGTGNQLNATK
                     KYGNNLNVGNGTSDSEPNDGKDTKNNGSGSNANGGTNQSDLNEIDNYEAILRKIEDLN
                     KKLERNIPVLRIGYIAPGVTSVKVNYNYVDPNNTLIGVTKISAVDEKTGKTVNTQYVS
                     AVDTEATLKGLSPNGKYHLEFTYQYDLGTNKGIQEVKMQSDSFTTQTVAAIYQMQSVT
                     STTMKVNIALDAQIDDVKRARIKVTKADGDFFYMNVSANFLNGNGETLNVTGLSPKTA
                     YQFQTIIEMKNGETIELNSSEKYYTMQATVLRNLRASQSVNKVLQVQYDWSSADYTLN
                     QATIELEDEEDKTEVDYQIVNQEKGNIHLVPDTKRELINLKAKLVLKTTNNNTKESKT
                     FEYPVKQEIEYDKQAKLTMDLTPFQTEENSELQSEKQDVVAEKETNGNDLTAKMEDVL
                     APQNATYDMSFSMQRKALETYQLEFERKIAGIDDDNWTVWKSQQVTTDEAGQVKVTET
                     ISKLAKESFDYRVAVYDAQGALQLYVYQK"
     gene            11401..11643
                     /locus_tag="IBJ56_000911"
     CDS             11401..11643
                     /locus_tag="IBJ56_000911"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463621.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. Subunit C is part of the
                     membrane proton channel F0; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit C"
                     /protein_id="HAM3417174.1"
                     /translation="MDLVVACSVIGAALAIGLATLGAAIGQGIAVSRATEIIGKNPNA
                     KKEVMGGLFLGLLMIVALMLFALAIAVILLWVNPFI"
     gene            11655..12686
                     /locus_tag="IBJ56_000912"
     CDS             11655..12686
                     /locus_tag="IBJ56_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417175.1"
                     /translation="MEKMIQTIILYSVFAVGFLYLLHFTLRKLENILTSFFYEVSQDQ
                     SLEKESLLRRLKRQKVATTQEEQKNRQLAIESEQKEELFLEEIDQLIAQNKSYEQQLQ
                     AWENEKPKQIVEVPRFETTPHAPYKSLSSYINEIFQQVFIESEEDEARLFTEAIREFD
                     ALVRTEKIRCALPYKVILQLFEMYSPEQLHLFAQSFQRYSERSSKLPVKQIYQSSYLS
                     PEQKLKVMQEEGTLDELDAEFIQFLFYMMTHYSYRQTRNLYRNFLEVYNIHFYTGLIC
                     IHVASKDSANHFEKLWQPAHRGYKIEYQVQKELIGGVIIQYGSKSIDMSYQELIKRST
                     EKMEAEVKL"
     gene            12683..14179
                     /locus_tag="IBJ56_000913"
     CDS             12683..14179
                     /locus_tag="IBJ56_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HAM3417176.1"
                     /translation="MKTIHFDMNKYETHVDLEYLKEHGRVEKISDGVIFCSGLENAAL
                     HQAVLIDERHRGVILELNEEFVGIGLIDKTNDILEGMHVGVSGKFIEVDLFEEMAGRV
                     IDTTGKMLYEESEEKPTATSPLFCVTPAIMTIDSVTRPLNTGLAVIDSITPIGRGQRQ
                     LILGNRQSGKTQIAVDTIINQHDQNVHCIYVAIGLKAAYIAEVIETLRNHGAMEYSTV
                     VATAASDSLTAQYLTPYAGMAVAEALRDQGKDVLIILDDLTKHADAYRAITLLFNRPP
                     GREAYPGDSFYIHSSLLERAVQMNEEHGGGSITAIPMIETLSDDVTAYIPTNVISITD
                     GQLFLKSDLFNRGQKPAVDVGVSVSRIGGDAQHPIIRKLSKNLTLILSQFEELKELLD
                     FGNALDDGSMKMVSDGRLLTELFKQKILSPLSVTELIVILYAFQNGFLTKIPPANIQT
                     FKDLLLEKAHMHKDFESFSAQIETINELNESHIEMLEEIIREAGRLFS"
     gene            14176..15045
                     /locus_tag="IBJ56_000914"
     CDS             14176..15045
                     /locus_tag="IBJ56_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HAM3417177.1"
                     /translation="MSSIDQARKTIKALNSTYKIVHVTELATLGKLSALREKAEAAVS
                     YYETILKSLRWVRKTMYTSNNQVKEEKNVTAIAITSERGLCGAYNSEVFVEIDQLIES
                     LGEQVTINWVVVGEQGHRYLTKLGQNITSYLQFSLENIDLETTTAVTADFIDLIHSEQ
                     MDALYVIFTKYLNAVQSEAMCEKIYPEIPEDSNTEEIEVDYVLDFETDDEQVEQLLLE
                     NYLCGLLYSMFRYSVASEYCMRRIAMKQAKDNIQKQLEEAIFNARKQALQQKTGELLD
                     IISGAQTIRKDEE"
     gene            15046..16416
                     /locus_tag="IBJ56_000915"
     CDS             15046..16416
                     /locus_tag="IBJ56_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HAM3417178.1"
                     /translation="MKKNTGTIISISGFVLKIEFNESELPEIGFALEYHTHQGTYLAE
                     VVQHTGINTVSAIAIGEVSGLARGTEVVNLGHPIEVPVGETVQGRMLNVYGKAIDGKP
                     EPAAEVKWPIFRDQPLLRELDTNKEILYTGIKVIDLICPILKGGKTGLFGGAGVGKSV
                     LMQELINNISMLGGNSVFTGVGERVREGIGLYKELEASGVLPQTTVVLGQMNESPGVR
                     MRVALTGLTIAEYLRDEEKKDVLLFIDNVFRFIQAGSEVSSLQGKIPITGGYQSTLSK
                     EVGDFQDRIASTKNGSITSIQCVFLPADDIDDPSAVATFSHLDSTIVLERSIAALGIF
                     PAVNPLQSFSRALNPTFVGERHYQLAAQVKFILQRYMELQEIINVLGMAELSDEDRKL
                     VHRARKIRNFLSQPFYVSEKFTGTEGTFVEIEDLLGSIERILNGDYDERSERDFLFIG
                     SYKDLK"
     gene            16429..16761
                     /locus_tag="IBJ56_000916"
     CDS             16429..16761
                     /locus_tag="IBJ56_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HAM3417179.1"
                     /translation="MKLKIVSPMGQFFEGEVEGFVINTKEGQQTVLEEHIDCLSFFDY
                     SEISILDAVASDPIFVALGYLHLVQNEANIMAQFASTDAEQAERIFERLNKRKQTESR
                     RSDDKRIF"
     gene            16742..17302
                     /locus_tag="IBJ56_000917"
     CDS             16742..17302
                     /locus_tag="IBJ56_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417180.1"
                     /translation="MTSEFFSTLLLIIGLLLGFFLAILLILVGIRRFLCSAEEPLKRI
                     QRYQLWHNRYQLNAEVTSFLIVIGASLSVSLITLQITAIPFQYTVLIFWSSWLFHLLS
                     FWKKIRVPKKMKNEMKQLAGFLLITVLYFVGFFAMKSVHFSIIQVADFPGVIQFGIRT
                     YLTICSFFVACGALIVWQRIYVKLLK"
     gene            17477..18109
                     /locus_tag="IBJ56_000918"
     CDS             17477..18109
                     /locus_tag="IBJ56_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3417181.1"
                     /translation="MTFLEFHQLVKEDLLIYSWIIKNFHLTRQKLMAGGEITMNREQV
                     IVMEKGLLVQVNEEGKDDLYRVFIDQRIIFTTKGDITLTALEDTSYSIIRAEELIGKL
                     EDQHLLPTFFLEIAEDFEKGLDWQRTLISVDPAERAEMILAKIIERYQINSENKPEFP
                     RWLRINVLARFAKCSVSTMSSVVNELVNEGDLNIKGTPWLLTRPYQATCA"
BASE COUNT         6477 a         2980 c         3560 g         5159 t
ORIGIN      
        1 aagaaaatat aaagtttgtg aaaaaaatgg aattcctgaa aaaatggaaa ttgtaaaata
       61 aaaaatacat tttactgtct cgttcagaac ccttgcaacc catatttaaa aagggcctaa
      121 atgttttagc aatgttttta taaaatccca aattggaaaa ccaaccttca cccaaaagga
      181 gctaacatga aaaaactaca atggctaact aaccgattat ttgcaacctc tatcctccta
      241 atcaccacgt tatttatcat acccccaaca tttgcgatag ctgatggaag taaagtgagt
      301 ttttatgaat acatatatgg agcacctttt agatggctaa ctgtaattag tacgacagat
      361 aagaaaggtg catttacgga gatgtttttc tcgggaaacg agggtataac tatccaatgg
      421 cccaatctaa tgataaactt tctcttaatt ttccttgcaa taactattat cttttcccta
      481 gcaaaaaagc tttacgataa aaagaacgtc aaaaaagaca acccataaca ggttgtcttt
      541 ttctatatgc tgttgtaaat ggtctcttac tgtacacgag aaaaattcac ctagctaaac
      601 tcgtctagtc ttaaccttct cttcataaat cccaatcttc ctaaccactg tatccaaatt
      661 cttctgcaag tcttcaatct cttgctccaa aataaccttt ttctttttta acatatttaa
      721 tcgttcggaa atagtgctgt ctcctgctgc gcgccaaatt gtgtactgct ttaattcttc
      781 taccgataac ccggcgcctt ttaagtgcag taaaaatttt agccaattgg cgtcttcttc
      841 gctgtatatg cgcaaattat tcttgtcgcg gtcaggggtt attaagcctt ctttttcgta
      901 gaatctaagg gtgctactgg gaatgcctac tagttcggaa aattcaccga tagaaaaagc
      961 catttaatca cctcttctgt gtgtttttca taaggatacc attttgaata ggaaatgcct
     1021 actttccgat gcgtttattt tcagctgctg agtatctatc accaacaatt tcaatctgcg
     1081 ataaagcatc agctattttt tgtcgtgctc cgtcatcaaa acgaatgtcc gtggaggcga
     1141 tattttcttt aattctgctt tgttttgttg ttccgggaat tggcacgatc caaggttttt
     1201 ggtcaagtat ccaagcgatg gcgagttgtg ccgttgtgac attttgctcg tcggctattt
     1261 ctttcataaa atcgagtagt acttggttgg cttccatggc ttctttttgg aatcttggta
     1321 agccaccgcg gttgtcgttt tcattgaagc tagcatttat atccaatttg ccagttaaat
     1381 aaccgcgacc tagtgggctg tatgcgacaa gcccgatgcc aagttcttct aaaaccggaa
     1441 atatttcttt ttcagcttct cgccaccaga tggaatactc actttcaaca gcagctagtg
     1501 gctctacttt atgagcacgg cgtattgtct ttgcgctggc ttcggaaagt ccccagtgta
     1561 gaatttttcc ttcttgtttt aaattctgaa tggttccggc aacctcttca attgggatag
     1621 aggggtcaat tctatgaatg taatataaat caatgtaatc cgtttttagc cgtttgagag
     1681 agccttcaac cgcggccttg atgctttctg gacggctatc gacttcgtta tttaaaccat
     1741 taattttaaa accacctttt gttgcaattt gaacatggtt tcttttgcca actaaagctt
     1801 ctccgacaag ttcttcatta gtataaggtc cgtacacttc agcagtatcg aacatcgtaa
     1861 tccctgcatc cattgcagtg cgtacgactt caatcatttc ttttctatct ttcgcaggtc
     1921 cccggtgata attgagtccc atacagccga atccaagctc tgaagttact aaaccagtgt
     1981 ttcctaattg tctctttttc ataaaaatat gctcctttta aaccaaattt ttaaattaga
     2041 aatatcagga tgttgtattt agtttatcag ttgaagtgaa ctttaagtca agcgtaacta
     2101 atttattttt aagagcatga gatagtttaa caaaagcgat gattaatttt attttattga
     2161 tgggggctta ttctttgttc ttggaaggaa aaattgcata aaagctgtct taaataagcg
     2221 ctaggaacga ttttagtagt tttaatagta ctaatacatc aagaaatgtt acgaaaaaat
     2281 gtcgacaaat actcaaaatc acgtaaatca gttgtaaatg agtatacgaa ttaaacgtat
     2341 tttctaagat aataatattt atgatggaaa ttcagaaagg gtgataacaa gaatgaagta
     2401 tatcgattac catgattata tgcataaaga cgcgataata tatgcttatc tccaaaataa
     2461 ttttccgtat atccgcaaac gaataaaggc gtgggaaagt tttacgctag atcgagaaga
     2521 tattctattg gtgaaaagtg gcgcaatatt tgaagaaatt agtgggaaga aaaaaggcat
     2581 agcacgatgc tttttttcga aaagtttaat ttttcctact agaaatcaaa tagtattgaa
     2641 agctttcgaa acttcagaaa tttgttttat caatgctgaa acagcttttg ggaaattaga
     2701 aaaagatcag attttatcca atttttttct acagattgcg gagaaaaacg aagaagacat
     2761 gcgaagacaa gcatttcttg ggacagagaa ctcaaaaaat aaaattattt caacgctcaa
     2821 cttcttgcta gaaaataata aatctaataa taaaacaccc atctttcctg aatggcttca
     2881 aataaatgtt ttggcacagt tagcgaattg ttccatctct accatttctt ctactgtaaa
     2941 cgaattacat gcggaaggaa tattagatat aaaatcttcg ccctggaaac ttaaaggcag
     3001 agaaaagagg atagaaattc ttgaaaatga gcaccagaaa ataaagctta atgaaagaaa
     3061 gcataagagt aatgttttct aatggtataa gacttgaaaa aactttttga gtacttttcc
     3121 aagcacaaaa attatactaa aagaggtgga agtaggactt gaagaaaaat attttagtcg
     3181 taatgattgt ttcggtactt gcaattagtg caattgtatc agcttttttc ttaatgagag
     3241 acgatgctta tgctattgaa acggaaggct ttacttatag cccgaaagga aaagtagtag
     3301 atttctcatc agaagccaag tataacgata catggattaa caatgagaaa acaataacag
     3361 ataaaaaaga aatgaagcca attaacctag caagaacgtt atttttaaaa gatggacgaa
     3421 ttcaattttt aggaaaaagt gtagccgtta aaagcgcatc agatttgatt gaattaccat
     3481 ccaaaacttc tataacagaa agcaaaggta gttacaaagc aaaaagtgat agtaataaaa
     3541 cattagcaca acttccaaaa ggcacagttg taaaacttgc agaaggaaga tatatcattt
     3601 tggataatgc ctacctaaaa aacaaacaag gtcttaataa gaaactacct aaaaacgtac
     3661 ttgtttccat agacgaaaat aaaaaagtga cgttaatggg cgataaaacc atagaagaat
     3721 taggcgggga tgatgcttat attgaaatgg agaacaatca ctatcacttt gacttgaaaa
     3781 aagaaatgtt ggtcagtcaa acagctaaag aaacagatat tgatattcgc tccattaaag
     3841 tggaaataga tgataatgcc gaaaaaagaa gtctaaaaac agctaaagaa acagcaaatg
     3901 aaacaacaaa agattcaact caaaaagaac cagaaaaaca gtcgaatgat acttctggac
     3961 aaaaaacaac gcaaaataat gagacgtctg aaggtaaaga taatcaaaca caaggcgcgt
     4021 ctggcaacaa tgcaaatgga aatgcaaata acaatacagc gagaagtaat ggaacaggcg
     4081 gaagtgattc tggtgcaaac ggctctcagc ccggtggtac gcagaataaa ccaaatgaag
     4141 gcgatgttaa taaagcgaat gaaattatta aaaagctaaa cgaagctgaa aacacaaata
     4201 cgtttcaagt accaattgtg gatgtcaatt tgacagttaa aggtcaagtg gctacagcta
     4261 aactaaaact gacagacgca tccaaaaggc taaactcctt agaagcaatt ctttacgata
     4321 gtaagaacaa tattgtaaaa aaagaaaaat tgaactcaac aaaagcgaat caaaacttca
     4381 cctttaacaa tttaaaatat ggcgaaacat atcaagtagt tgttcaggga agctacaagt
     4441 cagcaagcaa taaaaatcaa gatactattt tcttccgcca aacggttgag gcaaaaccgg
     4501 ttgttttaac tccaaaagtg acggagcgcg gcgaagatta tatgaaagcg gaactgactg
     4561 caaccgaact ttacggtcaa attgataagc tggttttaaa aatcaaagaa aacaacagca
     4621 atgtaaccac ttctcaaaaa gttactgttg atgcgagtca attgacaaaa gacggtcaag
     4681 tagaagttaa atttaattca ttaagtagtg ctaaagaata cattatcgaa atggaagaat
     4741 tgattgttga tggaaaaaac gtgacagatg atagttggta ctttatttcc tctacattaa
     4801 aagcgaaacc aacaattgaa ggcataaatc tttcatacag cacggataaa ggcgaatttg
     4861 ttgcgtcacc agttaatcta attgacagag acgaatcaat tacaagcatt cgatatgtag
     4921 cgtatttaga agatgactat aaagcaaatg gttctaatgc caaggaatac gcttattctg
     4981 tagtagatgc caaccaaaag aaaaccgctg ttaaagttgg tcgaacagtt gatatgaatg
     5041 atggtagtta tatttttgtt ggttatattt ctggcaataa tggtcagtct gattatactt
     5101 ttgcaactcc agcttcgaac agtgtcatcg ttggtaaaaa aacgaagcca actgtagagt
     5161 tttctctgaa agaagcagag caagataaac tgacaatcaa ctatgaaatt tttgatgcag
     5221 ataacacact tctttttgat aatctaacac atccaacctt aaagctttat aagtcagacg
     5281 ctcaagggat gtatagtgga aatcctgttg ctacagttga tttaacaaag aaaagtgata
     5341 ttacgaattt actagaattc gatggtttag aaagtgaagc ttactatgtt gtcgtaatga
     5401 caggctccta taatctggac gacggagcag ggattatggt tgatgagctt attggtcagt
     5461 caagtgtctt ccggacaacc gaaattacaa aggtcaacgc atctttttca cttgattcag
     5521 ttgatacaac aaaagcaaca attaatgtca aattgtctga agcggctgtt aatttaaacg
     5581 acgctaattt aaaaatttat gaaaagaaaa caaatacact tgtcaaaacg attccgctac
     5641 acggggattt tgagaagcta atgagcgatt tgggaaatag ttatcccttt aaagatttaa
     5701 gtattaataa agagtatctt gtgaaaatag aagatggcta tgatagtgga atgaatcatg
     5761 ttccagttga agggcaattt attttcaaaa ccaagaaaga agcacctgaa acagacaaag
     5821 tattgcttga ttacaaagct tctgaaatga aattaggagg cctagcggga atcgcggcaa
     5881 cggaaaagcc actgattgat gattacaacg ctgttagttc tattacctat agtatctata
     5941 aagcagacga tttaaacaca ccgcttgtgg agcaagaagt ttcaacagcg gcagactttg
     6001 agaagcacgt gtactttgat ttaactaata agctcttagg acgaggttat tcttatgtca
     6061 taaaagcgga tgttgtttgg aatgataatt atgaagatca tcatattgaa attaattccg
     6121 atacaatcca aatcaaaaaa gaaaaaccaa ccgttgaata cgaaatttta agccgcacag
     6181 cgagcgaaat taaattaaat gtatatgtag aagatgagga agaatctatc gtaccgggaa
     6241 cgcttgaaat tactagtacg acaggcggta atgagcaact tcaaagtggg aaaaataatg
     6301 taaccttacc actttcaagc gagggaacta caacaattaa aacaacaggt gattacatta
     6361 ttaccagcgg aagttcagct atttcagata tttttatgac gaaacagttg gcagcattaa
     6421 atactactgc accacaagtt ggagctaaaa ttgccatgga tgcttcaggc aaatcaatga
     6481 ctatcgcccc agaacctaat gcagttgcaa aaacttctgt gatgagaact aaatatgatt
     6541 tgaaagatgc tgcaagctcc aaaccagatt attcaattac aaaatctggt cctaatcaat
     6601 ttaatactca aaaccttaat ctgcctatag gtaatatttg gtttgataat tcttatcagc
     6661 taacccttga tatgaaaatg aattatacag aaaacaaaat cgataaccaa aacctagcca
     6721 ataattacta tctatctatt ggaaatggag cgtcatttgt tagctcttta agcggagcgg
     6781 tttcgacaac gaacaacgta aatagtgcgg atgttttcaa agtaacgaaa gcaagcaccg
     6841 attcagaagg taatatttcc ggtgttacat ttaaaaatat ttggactgat aagtatatag
     6901 cttatcgaaa tggtattttg attagtaata gcgagactcc tgattcattc aaattaatcc
     6961 gtcaagctga tggaagttat gtaccagaat tgagcggtcg ctatgttagt ttctctgttg
     7021 gactagtaac agatgaagca gctggatcaa aaatcgattt atattcaact caggaaaaat
     7081 tagaacaagt ttcggaagct atttctgtaa aagcacttga agagccagct atttcagctg
     7141 agaatattag tgtttatgat aaacgcgtca aaatagatgt tattggtgag gataaagaca
     7201 atacaacggt taagaaagat aacaagaatg aactgtttgt aaatgtttat aaagcagatg
     7261 gaacaacgct cgttaaatca attcggattg atggactacc aacacgcgat gtttctgtta
     7321 cagagctttc accagattca gattatgttg ttaaagttga agggaaatat gatttgttag
     7381 atggtaaagg cgaaaaagac aaagtgtatt tttcagagac aattaagaca gaaaaaagtt
     7441 taccgagtat gacttcaact gattattcat ggaatccagc atatggtcag cgagcaatta
     7501 aaggaaatat ccattttact gatgaaagta gcgtattaac aaatattgaa tatcgtctgt
     7561 acgatgctgc gacaatttct tccaatttat ctaatttagt agctttagag caagagttag
     7621 gcaataaaac tcccgtagct acatttgata atatgacaaa tagtccagaa ttctctatat
     7681 ataacagttc tggagctcaa aattttgttt ctggaaaaac atatgtgatt gcagcatata
     7741 tgaagacaag tctaacaaga gcacctatct tcctaagtga tgccaaggag ctttatattt
     7801 caccgccaag tggtgtttct gctccaatca cgctagaaaa tgtttcaaca agagaagcga
     7861 ctctgaaatt ctcttataat gatccacaaa gttattttgt tggcggaaca aataaagaat
     7921 tccagtacgt attaaaaaac acgacaaatg gaaaggaaat taaaaaagga tcgtttcaag
     7981 gtgggaatac agctagttgg ataaatactt ttgaggaatt agaacctgca acaggatata
     8041 cgctaacaat tagcacccaa tacgataatc taaatggtgg attagtaaga gcatggaata
     8101 ctagctttaa tttcactaca gatgatgaat atgtaacttc gaactcactt accattcagc
     8161 tagatgctgg agcaaaagta gttaaattac aggctaaaga agtcaaacca ggatctacaa
     8221 cgattgaaaa tattaaaatg gagttctatg agctaatcga ctatggaggc aataatgaac
     8281 ataatcaatt agttgaaact aaaaatatca ctttaccaag ttcttatcca gcaactattg
     8341 cagcagattt taatgtggca ggtaagaaga aaaatcaaag tttcttgggt aaaatgattg
     8401 tcacctatcg aacaccaaca aatgaagtta aaacgtatga aaaaacatct aatttcatta
     8461 ctttacaaga agatattgcc gcaggattaa aagcatttaa gagtgtgcga gcaacaaata
     8521 agactttaga agtaaaatta gatactccgc aagttaattt aaccgataaa ggagattaca
     8581 cgtatgaatt gaagggcgaa aatggtgagg taattgatac agaaaaagtt gcagcggaag
     8641 atatttctaa aactgtatcg ttatcaatgg agccaacaag tgattatacg ttgactgtca
     8701 ttaatccaga taaccagccc gtcgcacttt atcaaggcaa taacgaagaa aataatctga
     8761 aagctgaaat caacaaagat agttttacac tgatgagcaa taacacagcc gatgctgaaa
     8821 ctacaatgac agtaactgta gagcctaaag aattaacagc atggcaaaca gttcaatcct
     8881 ggtttggtaa agactttaca gaaacttata acatccaaaa agatgagcta gatacaggtg
     8941 tgaaaattga tgaaaattat caagacacta aagttactgt cgaagaaaca aaatcaggaa
     9001 agaattttgg aattattgaa ttggaggaga gcaaatgaaa cctacatgga aaatagggat
     9061 aatcgttgca gctgttccgt taataattat tgctgtcgtc ttatgggggt cttttaagga
     9121 ggcaaggtat aatcttgtct ctctccctga tgacggtgta gtcctaaata atgagcaaga
     9181 gacattgcaa tttcaaaagg gcaatacgct ttatcgcagt tggaatagtg atcaattaat
     9241 tgcgaaaaac gataaagaag atactcgaaa cgaaattatg gagagtacca tcctttatct
     9301 aaataaagaa gccttaatgt ttactaagag tgttcccgtc attgatacaa atggggttag
     9361 tagcaaacta aaaggaagac aagtctacca acagaccaat tcttcctata aatacaaaaa
     9421 ctcagaaatc acggaaaaca gtattgtaaa actagcaaac cgtcaatact atttaaacgc
     9481 agatgcaaca ctttatcttg gcggcaaaga aatcaaaaaa gtgtcgaaac cattactttt
     9541 gattgataaa acaggaagcg tcactattta tgaaaacaaa aagaaaagcc gttttcttgg
     9601 tcatatgacc ttgaaagtca atgataaaac ggttttagat gctagtaacg aaacgtatac
     9661 tgtcggcgaa cggaaaattg atttagctag ctttggtgga acagacaatg aaaagatagt
     9721 cgtaaaagaa gataagaaaa agaccgcaga atctgcgaaa gaaaaagagt ctgcgaagaa
     9781 aacagcaagt aactcctctc aatcagaaaa tgaaagtaac caaacaacaa aaggtacagg
     9841 caatcaactc aatgctacca aaaaatacgg aaataattta aatgttggaa atggaacttc
     9901 tgattcggaa ccaaacgatg gtaaggatac taaaaataat ggttcaggaa gtaatgcgaa
     9961 tggtggtact aatcaatcag atttaaatga aattgataat tatgaagcaa tcttacgtaa
    10021 aatagaggac ttaaataaaa aattagagcg aaacattcca gtgctaagaa tcggctatat
    10081 cgcacctgga gtgactagcg tgaaagtcaa ctataactat gtagatccga ataacacttt
    10141 aattggtgtc actaaaatta gcgccgtaga tgaaaaaact ggaaaaacag ttaatacgca
    10201 atatgtttca gcagtagata cggaagctac actaaaagga ctttcgccaa atggcaagta
    10261 tcatcttgaa tttacctatc aatatgattt aggaacaaat aaaggcattc aggaagttaa
    10321 aatgcaaagc gactctttta caacgcaaac tgttgccgca atttatcaaa tgcaaagcgt
    10381 tacaagcaca acaatgaaag taaatatagc gcttgatgca caaattgatg atgttaaacg
    10441 agcaagaatt aaagtaacca aagcagatgg agattttttc tatatgaatg ttagtgcgaa
    10501 ttttttaaat ggtaacggag aaacgcttaa tgtaactggg ctaagtccta aaactgctta
    10561 ccaattccaa acgattattg aaatgaaaaa cggagaaacc attgaattaa acagctccga
    10621 gaaatattac actatgcaag caactgtact aagaaatcta agagctagtc aatctgtgaa
    10681 taaagtttta caagtgcaat atgattggag ttcggctgat tatacattaa atcaagcaac
    10741 catcgaactg gaagacgagg aagataaaac agaagtagat tatcaaatcg ttaatcaaga
    10801 aaaaggtaat attcatcttg ttccagacac gaaaagggag ttaatcaact taaaagccaa
    10861 actagtactc aaaacgacaa ataataacac aaaagaaagc aaaacatttg agtatcctgt
    10921 taagcaagaa attgaatacg acaaacaagc taaactaaca atggacttaa cgccgtttca
    10981 aactgaagaa aacagtgagt tacagtctga aaaacaagat gtagtagcag agaaagaaac
    11041 gaacggaaat gatttaacag ctaagatgga agatgtttta gcccctcaaa acgcaactta
    11101 tgatatgtcc ttttcgatgc aacgtaaagc tctcgaaacg tatcagttgg aatttgaaag
    11161 gaagatagct gggatagacg atgataattg gaccgtgtgg aagagtcaac aagttacaac
    11221 ggatgaagca gggcaagtga aggttacaga aaccatttca aaactagcta aagaaagctt
    11281 cgattatcgt gtagctgtat acgatgcgca aggtgcatta caactgtacg tttatcaaaa
    11341 gtagtaaaaa atgatatgca ttttaataca acaaactcaa acagaaggta ggaaacaaca
    11401 atggatttag tagttgcatg tagcgtaatt ggcgcggcac tggcaattgg gcttgcgact
    11461 ttaggagcgg caattggaca aggaattgcc gtaagtagag caacagaaat tatcggaaaa
    11521 aacccgaatg caaagaaaga agttatggga ggtctctttt tgggacttct catgatagtt
    11581 gcattaatgc tatttgcact ggcaatcgca gtcatcttgc tttgggttaa tccgtttata
    11641 tgatgggtga gaatatggag aaaatgattc aaacaataat tctatatagt gttttcgcag
    11701 taggattctt atatttactg catttcacct taagaaaact agaaaatatc ttgactagct
    11761 ttttttacga agtgagtcaa gatcagtcgc ttgaaaagga aagtctttta cgccgtttaa
    11821 agcgacaaaa agtagcaaca acacaagaag aacaaaaaaa tcgtcaattg gctattgaat
    11881 cggaacaaaa agaagagctt tttttagaag aaatcgatca attaatagct caaaataaaa
    11941 gctatgaaca acaattgcag gcatgggaaa atgaaaagcc aaagcaaatc gtggaggttc
    12001 ctagatttga aacaacacca cacgcaccgt acaaatcact aagtagttac attaatgaaa
    12061 tttttcaaca agtttttatt gagtcggaag aagatgaagc gcgtctattt acagaagcaa
    12121 ttcgggaatt tgatgcatta gttagaacag aaaaaatacg ttgtgcgctc ccatacaaag
    12181 tgattttgca gttatttgaa atgtattcgc cagagcagtt acatttattt gctcagtcat
    12241 ttcagagata tagtgagcgt tcgagtaaac ttcctgtgaa acaaatttac caaagtagtt
    12301 atttatcgcc agagcaaaaa ttaaaagtga tgcaagaaga aggtacttta gatgagttag
    12361 atgctgaatt tatccaattt cttttttaca tgatgacgca ttactcttac cgccaaacgc
    12421 ggaacctgta tcgtaacttt ttagaggtat acaatattca tttttataca ggtcttattt
    12481 gcatccatgt agctagcaaa gattcagcta atcactttga aaaactttgg cagccggcgc
    12541 ataggggcta taaaatcgag tatcaagtac aaaaagagtt aattggcgga gtgattattc
    12601 aatatggttc taaatcaatt gatatgagct accaggaatt aattaaacga tcaacagaaa
    12661 aaatggaagc ggaagtgaaa ctttgaaaac aattcatttt gatatgaaca aatacgaaac
    12721 ccatgtggac ttggaatatt tgaaagaaca tggccgagtg gaaaaaattt ctgatggagt
    12781 tattttctgc tcaggcctag aaaatgcagc gctacatcag gctgttttaa ttgatgaaag
    12841 gcaccgaggt gtaattctgg agctcaatga ggaatttgtt ggaatcggtt tgattgataa
    12901 gacgaatgac attttagaag gtatgcatgt tggggtctcc ggcaaattta tcgaagtaga
    12961 cctatttgaa gaaatggcag ggcgtgttat tgatactaca ggaaaaatgc tttatgaaga
    13021 aagtgaagaa aagccgacag caacctctcc acttttctgt gtaactccag ctattatgac
    13081 gattgatagt gtaacacgcc cgcttaatac ggggcttgcg gtgattgatt ctattacgcc
    13141 aattggtcga ggtcagcgtc aattaatcct tggcaatcgc cagtctggga aaacacaaat
    13201 tgctgtggat acgataatta accaacatga tcaaaatgtg cattgcatct atgttgctat
    13261 tggcttaaaa gcagcttata tcgcagaagt tattgaaact cttcgaaatc atggagcaat
    13321 ggaatattct acggttgttg caactgcagc cagtgattcc cttaccgcgc aatatttaac
    13381 accgtatgcg ggtatggcag tagcggaagc cttgcgagat caaggtaaag atgtactcat
    13441 cattttagat gatttaacca aacatgcgga tgcttatcga gcaattactt tactctttaa
    13501 ccgcccgcca ggaagagaag cttatccagg agatagtttt tatattcact ctagcctctt
    13561 agaaagggcc gttcaaatga atgaagaaca tggtggcggt tctattacag caataccgat
    13621 gattgaaact ctatcagatg atgtaacagc ttatatccct actaatgtta tctctattac
    13681 agatgggcaa ttatttttaa aatcggattt attcaaccgt ggtcaaaagc cagccgtaga
    13741 tgttggtgtg tctgtttcaa ggattggcgg cgatgcacaa cacccaatta tacgcaaatt
    13801 aagtaaaaac ttaacgttga ttctttcgca gtttgaggaa ttaaaagaat tactcgattt
    13861 tggtaatgca cttgatgatg gcagtatgaa aatggtatcg gatggccgat tattaacaga
    13921 attattcaag caaaaaattc taagcccgtt atcagtaacg gaattaatcg ttattttata
    13981 tgctttccaa aatggctttc taacaaaaat cccgcctgcc aatattcaga ccttcaaaga
    14041 ccttttgcta gaaaaagcgc atatgcataa agattttgag tcgttttcag ctcagataga
    14101 aacgattaat gaactgaatg aatcgcacat cgaaatgcta gaagagatca ttcgggaagc
    14161 tgggaggctt tttagttgag tagcatagac caagcccgaa aaaccattaa agcactaaat
    14221 tcaacctata aaatagtcca tgtaacagaa ctagcgacac tcggaaaact ttccgcctta
    14281 agagaaaaag cggaagcggc tgttagttat tacgaaacta ttttaaaaag tttgcgctgg
    14341 gtgagaaaaa ctatgtacac cagtaataac caagtaaaag aagaaaaaaa tgttactgct
    14401 attgcgataa cttctgagcg tggtctttgc ggcgcctata atagtgaggt ttttgttgaa
    14461 atcgaccagt tgattgaatc actcggcgag caagtaacga taaattgggt agttgtaggt
    14521 gaacaaggtc accgttattt aacaaaacta ggtcagaata tcacctctta tttacagttt
    14581 tctcttgaaa atattgattt agaaaccact acggctgtta ctgctgattt tattgaccta
    14641 attcattcgg aacaaatgga cgcactatat gtgattttca cgaaatattt gaatgcagtt
    14701 caatcagaag ctatgtgtga aaaaatttat cctgaaattc cagaagactc gaatacggag
    14761 gaaattgaag tagattatgt actcgatttc gagacggatg atgagcaggt ggagcagtta
    14821 ttattagaaa actatttgtg tggcttgctt tatagcatgt ttcgttactc ggttgccagt
    14881 gaatattgca tgcgccgaat cgcgatgaaa caagccaaag acaatatcca gaaacaattg
    14941 gaagaagcta tttttaatgc cagaaagcaa gcattacaac aaaaaactgg cgaattactc
    15001 gatatcatta gtggagcaca gacgattagg aaggacgaag aataaatgaa aaaaaacaca
    15061 ggaaccatta ttagtattag tggttttgtt ttaaaaatcg aatttaatga gagcgaactg
    15121 cctgaaattg gctttgcgct tgagtatcat acacatcaag gaacttatct agctgaagtt
    15181 gttcaacata ctggaattaa tacagtgtct gccatcgcta ttggtgaggt aagtggcttg
    15241 gctagaggta cggaagtcgt taatttagga catccaattg aagtacctgt tggggaaacc
    15301 gtccaaggaa gaatgctaaa tgtatatgga aaagcgattg acggcaaacc agaaccagct
    15361 gcggaagtaa aatggccaat attccgtgac cagcctttac ttcgagagct agatacgaat
    15421 aaagaaattc tttacactgg tattaaagtt atagatctta tttgtcctat tttaaaaggt
    15481 gggaaaacag gtttattcgg tggagcgggt gtagggaaat ctgtcttaat gcaagaattg
    15541 attaataata tcagtatgct tggtggtaac tctgtattta ctggggttgg agaaagagtt
    15601 agagagggaa tcggcttgta taaagaatta gaagcaagtg gtgtgctccc tcaaacaacc
    15661 gttgtacttg gtcaaatgaa tgaatctcca ggtgtacgga tgcgcgtggc attaacagga
    15721 ctaacgattg cagaatatct acgagatgaa gagaaaaaag atgttttatt atttatagat
    15781 aatgtcttcc gctttattca agcgggttct gaagtttctt ctttacaagg aaaaattcct
    15841 attactggag gttatcaatc cacactttcc aaagaggtcg gcgattttca agaccgcatc
    15901 gcgtctacta aaaatggctc tattacctcg attcagtgtg tatttttacc agcagatgat
    15961 attgatgatc catctgcagt tgcgacgttt agccatctag actcaacaat tgtattagag
    16021 cgttcgattg cggcacttgg gattttccca gcggttaatc cacttcaatc attctcaaga
    16081 gcactcaatc caacctttgt tggcgagcga cactaccaat tagcggcgca agtgaaattt
    16141 atcttacagc gttatatgga actgcaagaa atcatcaacg tacttggaat ggcagaatta
    16201 agtgatgaag atagaaaact agttcatcgt gcaaggaaaa tcaggaattt cctttcacaa
    16261 ccattctatg tttcggaaaa attcactgga acagaaggca catttgtaga aattgaagat
    16321 ttgctaggga gtatcgaacg cattttgaac ggtgattatg atgaacgctc agaacgtgat
    16381 ttcctattta tcggatccta caaagacttg aaataggagg agaaggaaat gaaacttaaa
    16441 atcgtctcgc ctatggggca gttttttgaa ggagaagtag agggctttgt tattaataca
    16501 aaagaaggac aacaaaccgt gttagaagag catattgatt gtttaagctt ttttgactat
    16561 agtgaaatca gtattttaga tgcagttgct tcggacccaa tctttgtggc acttggatat
    16621 ttacatttag tacaaaatga agcaaatatc atggcacagt ttgcttctac ggatgccgag
    16681 caagcggagc ggatttttga aagactaaac aagcgaaaac aaacagagag taggcggtcc
    16741 gatgacaagc gaatttttta gtacacttct gttgattatt ggtttattac ttggtttttt
    16801 tctggcgata ttattgattt tggtggggat tcggcgcttt ttatgtagcg ctgaggaacc
    16861 cttaaaacga atccagcgct atcaattatg gcataatcgc tatcagttaa atgcagaggt
    16921 tacttctttt ttaattgtta ttggagcatc actttcagta agccttatta cattacaaat
    16981 taccgcaatt ccttttcaat atacggtgct aatattttgg agtagttggc tattccactt
    17041 actttctttt tggaagaaga taagagtacc taaaaaaatg aagaacgaaa tgaagcaatt
    17101 agcaggattt cttttgatca cagtgcttta ttttgttggt ttttttgcaa tgaagtcagt
    17161 gcatttttct attatacaag tagcagattt tccgggagtt attcagttcg gaataagaac
    17221 ctatctaact atttgtagtt tttttgtggc gtgtggggca ttaattgttt ggcagcgcat
    17281 ctatgtgaaa ctactaaaat gactaagaat gtgaataaag cataaccaag aaaagtgagg
    17341 atgtctacgt ggcatccttt tttataaatg aatataaaaa aagaattttt ctaacatatt
    17401 tctaacatac ttgtactata ctttaaataa gctgttgatt agccataaga aaatgaacga
    17461 aaggaagtaa attcaaatga cttttttaga attccatcaa ttggtcaaag aagatttgtt
    17521 gatttattca tggattataa aaaattttca ccttacgcgt caaaaattaa tggcgggtgg
    17581 cgaaataacg atgaaccgtg aacaagtaat agtcatggag aaaggtttac tagtacaagt
    17641 aaacgaggaa ggtaaagatg atttgtatcg tgtttttatc gatcaacgaa ttatttttac
    17701 aacaaaagga gacattacct taacggcgtt agaagatacc tcttatagca tcattcgagc
    17761 agaagaatta attggaaaat tagaagacca acatttatta ccaacatttt tcttagaaat
    17821 agcggaagac tttgagaaag gtctagactg gcaaagaacg ctaatttctg ttgatcctgc
    17881 agaacgtgcg gaaatgattt tggcgaaaat tatcgagcgt tatcaaataa attcagagaa
    17941 caaaccagaa tttccaagat ggttaagaat aaatgtacta gcaagatttg ccaaatgctc
    18001 agtgtctact atgtcgtcag ttgtaaacga actagtcaat gaaggtgact taaatataaa
    18061 aggaacacct tggttattga ctcgacctta tcaggcaact tgtgcttaaa acagacctgt
    18121 aaaaaaccac gcttaaatga catttgcgtg gtttttttac gcgatctata aaaaaa
//
LOCUS       DABQVC010000038        17939 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.038,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000038 DABQVC010000000
VERSION     DABQVC010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17939
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.038"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            107..604
                     /locus_tag="IBJ56_000919"
     CDS             107..604
                     /locus_tag="IBJ56_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007543617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HAM3417182.1"
                     /translation="MLFLLSFVIFNDDLKKEFSFVKGILPGIFSGIVLYIIFYIGAFI
                     IKVMPGGLENSVEAAFNKYSTHSLIIWLLLIVAIIPGEEIFWRGFVLKRLNHYFNPWF
                     SNVFAALLCMVMMFPSGNFAAIIGIFVASLVWNIMYSYRPSLLMLYLSHLTFAFLLLA
                     ALPIY"
     gene            768..2936
                     /locus_tag="IBJ56_000920"
     CDS             768..2936
                     /locus_tag="IBJ56_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HAM3417183.1"
                     /translation="MNCEKCNQNPATIQLYMNINGKRVEMPLCASCYAEVRNQANFGA
                     NEFPGASGSPFDDIFRQLSGAASQANREQRSQAQVQTQTAGGGNGLLDEFGTNLTDMA
                     KNEQLDPVIGRDKEIKRVIEILNRRNKNNPVLIGEPGVGKTAVVEGLANAIVAGEVPS
                     KLMNKEVILLDVASLVSGTGIRGQFEERMKQLIKELQERKNTILFIDEVHTIVGAGSA
                     EGSMDAGNILKPALARGDLQMIGATTLKEYRTIEKDAALERRFQPVTVSEPSTKETLT
                     ILNGLKPKYEDFHEVVYSPEALTAAVELSARYIQDRHLPDKAIDLMDEVGSKYNLSIE
                     KLDENTVSERVARLEDEKNQALQMEDYEKAAKVRDEITRLEENKTNNSFSERPVIQAS
                     DIQAIIEEKTGIPVGRLQEDEQSKMKNLESNLTGKVIGQEDAVRKVAKAIRRSRVGLK
                     SKNRPIGSFLFVGPTGVGKTELGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSP
                     PGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTVS
                     FKDTVIIMTSNAGATDTEASVGFNTTTEAKLEKGSDILAKLGAYFKPEFLNRLDSVIE
                     FKSLEKDDLVQIIDLMLVDLNEMLAQEDVTIDVSKEVKEHLIDLGYDPKFGARPLRRT
                     IQEHLEDAIADSLIEQPEAKHLVATLNENKEITITEQVTV"
     gene            complement(2952..3431)
                     /locus_tag="IBJ56_000921"
     CDS             complement(2952..3431)
                     /locus_tag="IBJ56_000921"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HAM3417184.1"
                     /translation="MLKQQKTSPVGDLFITIDEKWIRNISYDEPKNWELLEGTIIEKE
                     LFQALTIQLDDYFEGKREHFDLPVLLKGTDFQQKVWQALSEIPYGVVVSYKDIAISAG
                     SPKAVQAVGQANRANPIPIIIPCHRCVKSNGELGGYNGADVDKKQYLLALEKGLSLS"
     gene            3616..4647
                     /locus_tag="IBJ56_000922"
     CDS             3616..4647
                     /locus_tag="IBJ56_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HAM3417185.1"
                     /translation="MEQTALKRESYFDNAKFILIFLVVFGHFLQTFIADYAGVRVLYI
                     YIYTFHMPAFVLISGFFAKSFGKPGYLKKTMKKLILPYVFFQLIYSIFYYFLLSKDNL
                     SIQFLDPEWSLWFLLSLFFWNIMLFIFAKIKPWKSICIALFVGLVAGYFDIIGGYLSL
                     SRTLVFFPFFLVGYFLKKEHFYYLKTHFVMILGGIFIVLLLSFITFHPNLNDKWFLGS
                     KPYANFVEVKSLGLFIRALVYLISFGSIAAFFSFIPRKRLFFTKWGKNTLYVYLLHGF
                     FIKFFREGSQTDFQYSPSTFLLLFVVTFVLTVLLSSRLVKIFVQPVIELRVSMLRDVF
                     SRLTKRESY"
     gene            4677..5045
                     /locus_tag="IBJ56_000923"
     CDS             4677..5045
                     /locus_tag="IBJ56_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HAM3417186.1"
                     /translation="MGSRKPEIIIGLIGSIIGILVGFWIINYGDSVTDYIQTFTYLPG
                     ELGNELANLGWITLIASVVALIASLLIKSAPRGWGVILVIIGIVLFFVIGTAWIISGI
                     LITLTGLMGIFRRPVPKSKY"
     gene            complement(5125..6450)
                     /locus_tag="IBJ56_000924"
     CDS             complement(5125..6450)
                     /locus_tag="IBJ56_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HAM3417187.1"
                     /translation="MTPVQVIIAYYFIAVTISTIVLSLPFTLQKGVKVSFIDTLFTAA
                     SSVSVTGLATVDVSQTYSTAGIWVLMAIFQIGGLGVMMISTFFYLILKRRIGLKQRQL
                     IMTDTNQFTMSGMVRMLREILVLIFGIELIGALILGIYFIPLYPNFWDAMFQGLYNSV
                     SLVTNAGVDITGKSLMPFAYDYFVQFISILLIIAGAIGFPVLLETRRFLFEKNTLIPF
                     RFSLFVKVTTLTYFVLLIVGGLLIWLFEYHHFFSGKSWDFGFFNSMFLSATSRSAGLQ
                     TIDSGALSISTLLLVSFLMFIGASPSSVGGGIRTTTFAITILFIYSVIRGRKHVYIFG
                     RELHQEDVRKSLAVTLVAGFLSISAIVVLMQTETASLIAVIFEVFSAFGTTGLSVGLT
                     PDLSTPGKIIIIALMFIGRVGIMYSMLSLRNKNQPKNAIRLPKEKIITG"
     gene            complement(6503..7270)
                     /locus_tag="IBJ56_000925"
     CDS             complement(6503..7270)
                     /locus_tag="IBJ56_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HAM3417188.1"
                     /translation="MDVSIWGEYALVFLVLVVLEGILSADNAVVMAVIVKGLPHDKQR
                     KALFYGLVGAFVFRFIALFLISFLVKIWEIQAIGAVYLLYLAIKHMWRLKKGKQEEVK
                     EASEAKSTSFWGVVARVELTDIAFALDSMLAAAALVVTLPDLGNFDIGGMNGGQFIVM
                     FLGGIAGLVVIRFAATQVVKLLERYPTLETAAFLIVGWVGVKMAVLTLAHPSVAIIPE
                     DFPDSAVWKLTFWSVMIIIGLGGYIIARKKEKKTKRV"
     gene            complement(7373..8140)
                     /locus_tag="IBJ56_000926"
     CDS             complement(7373..8140)
                     /locus_tag="IBJ56_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HAM3417189.1"
                     /translation="MDTAMILEYGWVLLVLIGLEGILAADNAVVMAVMVKHLPDKQQK
                     KALFYGLMGAFVFRFGALFLISFLANVWQVQALGAAYLLYIAISHIWKHAKGKDGEKE
                     KKEKAGSGFWMTVLKVEIADIAFAIDSMLAAVALAITLPETGWGHIGGIDTGQFAIMF
                     LGGLVGLIIIRFAATQFVKLLKSYPSLETAAFLIVGWVGVKLVIYTLAHPSLGVIPHS
                     FPESTLWKLIFWGVMILIIIWGWFVSYRSKKKAETTK"
     gene            complement(8422..9782)
                     /locus_tag="IBJ56_000927"
                     /pseudo
     CDS             complement(8422..9782)
                     /locus_tag="IBJ56_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464515.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
     gene            complement(9835..10260)
                     /locus_tag="IBJ56_000928"
     CDS             complement(9835..10260)
                     /locus_tag="IBJ56_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3417190.1"
                     /translation="MRREKTMDTLIRSIMIKSKRKMDAKVAQFGLTTQQARVLGFLND
                     NAANEIIQKDLQRIFQTRGASITSLIQGLEKKELISRKPSIRDGREKVVTLTEEGKRI
                     VDEFNESFPREDDKAKKILSADEYKIFIDLLSKIDDNTE"
     gene            complement(10368..11936)
                     /locus_tag="IBJ56_000929"
     CDS             complement(10368..11936)
                     /locus_tag="IBJ56_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HAM3417191.1"
                     /translation="MSQDLQKEVASRKTFAIISHPDAGKTTITEQLLLFGGVIRSAGT
                     VKGKKSGKFATSDWMEIEKQRGISVTSSVMQFDYNGSRINILDTPGHSDFSEDTYRTL
                     MAVDSAVMVIDAAKGIEAQTLKLFKVCRMRGIPIFTFINKMDRQGKMPLELLAELEEV
                     LGIESYPMNWPIGMGKELAGLYDRYHRVIEQYRSEEDERFLPLGEDGDLKEAHAIQKS
                     LYYDQALEEIMLLDEAGNDFSRERIIAGEQTPVFFGSALTNFGVETFLRTFVDFAPSP
                     SSHESNEGVIEADNPKFSGFIFKIQANMNPAHRDRIAFIRICSGEFERGMNVTLTRTG
                     KSMKLANSTQFMADDRETVNRAVAGDIIGLYDTGNYQIGDTITNGSKKLEFEKLPQFT
                     PELFMRVYAKNVMKQKHFHKGVEQLVQEGAIQLFKTWRTEEYIIGAVGQLQFEVFEHR
                     MRGEYNSEIRMEPIGKKIARWVKEEDADEKLSTARSMLVKDRFDQPLFLFENEFAINW
                     FNDKNPDIELTSLL"
     gene            complement(12018..12872)
                     /locus_tag="IBJ56_000930"
     CDS             complement(12018..12872)
                     /locus_tag="IBJ56_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3417192.1"
                     /translation="MISRNLKIYFRDRTAVFMSLLTVLIIIGLYAIFLGNNMEEMFKQ
                     ASGKTIGIQELVNTWVIAGILSITPVTVSLAVFSLKVHDEELSIARSFAITPASRWRI
                     VISYIVSGLVASFLLSVVTLFVGEMYIWLTGGAFLPFESWIRLIGVILINVFCCSSMM
                     FFIASLVKKASAFSSVSTIVGTVIGFIAGIYLPIGSLPATVQTAMKCFPFTYGASTIR
                     EIMTKEPLQQVFAGNTQAMDATKEMIGITIYWSDKTVTTGLSLLILSAFAVVFGVLSV
                     ILMKRQTK"
     gene            complement(12865..13776)
                     /locus_tag="IBJ56_000931"
     CDS             complement(12865..13776)
                     /locus_tag="IBJ56_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417193.1"
                     /translation="MIKLINVVKKFGKIEAVKGINLEVEKGSLFAFLGENGAGKSTTL
                     SMICTESEPTSGEIFIDDEKLTFKNRKLFRQKLGVVFQENVLDDLLTVRENLYNRASL
                     YGKTKAEITERLALVSSIMGIEDILNRRFEKLSGGQKRRAEIARAIMHDPEILLLDEP
                     TTGLDPKTRVSVWKIIDYLREELGMTVFLTTHYLEEAKDADQLAVIHKGKIIAQGTPA
                     NIRSRFSVDKIFFYDAKVAELQKIMKKMNLPFKVTNRTMRVDVIDENVEILAILNQAI
                     GFYDSFEVIKGNLDDAFISMIKEDSND"
     gene            complement(13773..14201)
                     /locus_tag="IBJ56_000932"
     CDS             complement(13773..14201)
                     /locus_tag="IBJ56_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3021 family protein"
                     /protein_id="HAM3417194.1"
                     /translation="MSTKLIQFIQSACLIFSASIITMICSYIATGESETVAIRDIFIM
                     LGFSIVTTFIQQLLFNNSVKTRRAFYSRLIAFFLFIGAAILGLGWLLDWYHNIAGFMI
                     ILGFICVTFLVMHIFFSFRDVKFSNEINQKLAEMRERETK"
     gene            complement(14198..14653)
                     /locus_tag="IBJ56_000933"
     CDS             complement(14198..14653)
                     /locus_tag="IBJ56_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator"
                     /protein_id="HAM3417195.1"
                     /translation="MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNMVIGIEESAEKISV
                     KKDGATYLLEPKAILYFEAVESKIFVYTEKEIYEIHWKLYELEEKFKESSFFRCSKSM
                     ILNIEWIEKIAPGFNGKFEAKLLNREKVIISRQYAKVLKQKLNMGGKRK"
     gene            complement(14786..15265)
                     /locus_tag="IBJ56_000934"
     CDS             complement(14786..15265)
                     /locus_tag="IBJ56_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HAM3417196.1"
                     /translation="MNVHDFSEKAMNGKEIALSDYKGKVLLIVNTASKCGLTPQLEGL
                     EAMYKKLGGANFEILGFPCNQFLRQDPGSDEEILEFCQMNYGVTFQMFSKIKVKGKDA
                     SPLYKYLTEQTGGKKVEWNFAKFLIDENGEVVERFPSKMKPADFEDKVEALVAKVNN"
     gene            complement(15278..16330)
                     /locus_tag="IBJ56_000935"
     CDS             complement(15278..16330)
                     /locus_tag="IBJ56_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HAM3417197.1"
                     /translation="MSYEPNTKETMQKIKELTSIPSPTGNTGKIIEKLAKDLDASKIP
                     YHLNNKGGLIVTLPGKDDTKHRMLTAHVDTLGAMVKEIKADGRLLLTLIGGYRFNAIE
                     GEYCTIETSDGDLYSGTILMHQTSVHVYKDAGTAERNDKNMEVRLDVKALDADKVRAL
                     GIEVGDFVSFDPRVQIINDEYIKSRHLDDKASVAILLQLINHIHENKLELPHTTHFLI
                     SNNEEIGYGGNSNIPSETVEYLAVDMGALGDGQTSDEYTVSICAKDGSGPYHLGLRKH
                     LVELAKSNNIDYKVDIYPFYASDASAAINAGNDIVHGLIGPGIDASHAYERTHRDSLY
                     HTEKLVYAYLFSNILK"
     gene            16471..>17939
                     /locus_tag="IBJ56_000936"
     CDS             16471..>17939
                     /locus_tag="IBJ56_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3417198.1"
                     /translation="MEQTKVKAVTIAVFVATFMAAIEGTIVSTAMPTIVSQLDGIELM
                     NWIFSVYLLTSAVTVPIYGKLSDLYGRKNIFVIATIIFIIGSSLCGFAQNMEQLIIFR
                     AIQGIGAGGILPSTMTIIADVYPFEKRAKVLGFMGSAWGIAGVFGPLVGGFLVDQLSW
                     HWIFFINVPIGILTILLILLYLREKVEHVKLPIDYLGASFFTVALLGLLFALQRAGES
                     LNWTEPLVVILFAVSIVLFIAFYFVEKRAKDPIMPFVLFKNPVVLIGNLIGFLISAFL
                     IGINVYIPMWAQGMLGHGATIAGFMLAPLSVTWIIGSFIGGKLLMTLGNRHTVGIGVL
                     ITAASGLILALFPASTNDIFFYLNSAFMGFGFGIIFTTTTVTVQDAVPRFQTGIATAS
                     NTLFRTVGQTIGVAVFGTIFNSVLTSEFRAAAGSEVNRSNLNQLISPQTSGNVSADLV
                     DPLRDILYSGLHMVFWVMFACCIVSYFIHFILPKKHISG"
BASE COUNT         5609 a         3701 c         3000 g         5629 t
ORIGIN      
        1 catcaagatc gattataaac ttgtactggg ccttgtttta tgcgccctac tcgttatact
       61 aacatatcag ttcccacgtg ttttttggta tttatatgga gctgggatgt tatttttact
      121 tagttttgtg atttttaatg atgatttaaa aaaagagttt tcgttcgtta aaggcatttt
      181 gccaggtatt ttttccggaa ttgtccttta tattattttt tacataggcg cttttattat
      241 taaagtaatg ccaggcggtc tagaaaattc tgtagaagct gcttttaata agtattcgac
      301 gcattctttg ataatttggc tactgcttat cgtggccatt atccctggag aagaaatttt
      361 ctggcgcggc ttcgtattaa aacgattaaa ccattatttc aatccttggt tttcgaatgt
      421 ttttgcagcg ttactatgta tggtaatgat gttcccaagt ggcaactttg cagcgattat
      481 cggtatcttt gtcgcttcgc tcgtatggaa tatcatgtac tcctatcgcc caagcctact
      541 catgctatat ttatcgcatc taacctttgc gtttttgtta ctcgcagcct taccaattta
      601 ttaaaaatag cacaaaaacg ctccttttta ggggtgtttt ttttataaaa aaaaataagc
      661 aaaatacttg aaagtcaaaa taggtcagta tataataaag tcataaggtc aaagatagtc
      721 aaagtcaaga cctttcattt ctcattttta aaaggaggaa attatatatg aactgtgaaa
      781 aatgtaatca aaatccagca acaatccaac tatatatgaa tattaatggc aagcgtgtag
      841 aaatgccgct ttgtgcctct tgttatgcag aagttagaaa tcaagcaaac tttggggcga
      901 atgagttccc aggagcaagc ggttccccgt ttgacgatat tttccgtcaa ttgagtggtg
      961 ctgctagtca agcaaaccgt gaacaaagaa gccaagcaca agtacaaaca caaactgctg
     1021 gtggcggcaa tggtttacta gatgaatttg gaacaaactt aacagatatg gcgaaaaatg
     1081 agcaactcga ccctgtcatc ggtcgtgaca aagaaattaa acgcgtcatt gaaatattaa
     1141 accgccgtaa taaaaataat ccagtcttaa ttggtgaacc aggtgttggt aaaacagctg
     1201 tcgtcgaagg acttgcaaat gcgattgtcg caggagaagt tccaagcaaa ttaatgaaca
     1261 aagaagttat cttattagat gtcgcttcac ttgtttctgg aacagggata cgcggtcaat
     1321 ttgaagaacg catgaaacaa ctgattaaag aactacaaga acgtaaaaac acgattctct
     1381 ttattgatga agtgcatacg attgttgggg caggttccgc agaaggctcg atggatgcag
     1441 gaaacattct aaaaccagct ctagctcgtg gcgatttaca aatgattggt gctactacac
     1501 taaaagaata ccgcacaatc gaaaaagatg ccgcacttga gcgccgtttc caaccagtaa
     1561 ctgtaagcga accatccaca aaagaaacgc taactatttt aaatggttta aaaccaaaat
     1621 atgaagattt ccatgaagta gtttattcac cagaagcact aacagcagca gttgaattaa
     1681 gcgctcgtta tatccaagat cgtcatttgc cagataaagc aattgattta atggatgaag
     1741 ttggctcgaa atataatcta tccattgaaa aactggacga aaatacggtg agcgaacgtg
     1801 ttgcccgttt agaagatgaa aaaaatcaag ctcttcaaat ggaagactac gaaaaggcag
     1861 ccaaagttcg tgatgaaatt actcgcttag aagaaaataa aacaaataac tccttctcag
     1921 agcgtccagt catccaagca tccgacatcc aagcaattat tgaagaaaaa acaggtattc
     1981 cagtaggacg cttacaagaa gacgagcaat ctaaaatgaa gaacttagaa agtaacttaa
     2041 ctggaaaagt cattggtcaa gaagatgctg taagaaaagt agctaaagca attcgtcgta
     2101 gccgtgttgg cctcaaatca aaaaatcgcc caattggttc cttcctattt gttggaccaa
     2161 ctggtgtcgg aaaaacagaa cttggacgca cgctagctcg tgaattgttt ggtactagtg
     2221 aagcgatgat tcgtttagac atgagtgaat tcatggaaaa acacagcgtc tctaaattaa
     2281 tcggttcccc tcctggctat gttggtcacg aagaagctgg acaattaaca gaaaaagttc
     2341 gtcgcaatcc gtatagcatc attttgttag acgaaatcga aaaagcacat ccagacgttc
     2401 aacatatgtt cctgcaaatt ttagaagacg gtcgactaac tgattcacaa ggacgtacag
     2461 tgagctttaa agatacagtc atcattatga caagtaacgc tggcgcaact gacacagaag
     2521 cttctgtcgg ctttaataca acaaccgaag caaaacttga aaaaggttct gacatcttag
     2581 caaaattagg cgcatacttc aaaccagaat tcttaaaccg tctagacagc gtcattgaat
     2641 ttaaatccct agaaaaagac gatttagtac aaatcatcga cttaatgctc gttgatttaa
     2701 atgaaatgct cgctcaagaa gatgtgacaa tcgatgtttc taaagaagta aaagaacatt
     2761 tgattgacct tggttatgac cctaaattcg gagcacgtcc actacgccgg actatccaag
     2821 aacacctaga agatgcgatt gccgacagtc taattgaaca accagaagca aaacatcttg
     2881 ttgcaaccct taacgaaaat aaagaaatta ctataacaga acaagtaaca gtgtaataaa
     2941 aaaggcttga gttaacttaa actcaagcct ttttctaatg caagtaaata ttgtttctta
     3001 tctacatccg ccccgttata gcccccaagt tctccattac ttttcacgca tctgtgacat
     3061 gggataataa tcggaattgg gttagcgcga ttcgcttgtc ctactgcttg cacagcttta
     3121 gggctacctg ctgaaatcgc aatgtcttta taactcacaa caaccccata cggaatttca
     3181 ctcaatgctt gccaaacctt ttgttgaaaa tcggttcctt taaggagcac cggcaaatca
     3241 aaatgctctc tcttgccttc aaaatagtca tctagttgga tagttaatgc ttgaaaaagt
     3301 tctttttcta ttatagttcc ttctagaagt tcccaatttt ttggctcatc atacgaaata
     3361 ttcctaatcc acttttcatc aatagttata aataaatcac ccactggcga tgttttttgt
     3421 tgttttagca ttctgtcgct cctctccatt aagttattat tctaaagata gcacgtccct
     3481 cttccattcg caactagctg tcatgccctg ttaatatttg atactttttg ttacttaact
     3541 gttggataag cgttacagaa ttcagggtaa aataaacaat agtttgtcaa catagaatag
     3601 aaaggactgt tttttatgga acaaaccgcc ttaaagcggg aaagttattt cgacaatgcc
     3661 aagtttattc taatttttct agttgttttc ggacattttc tccaaacatt tatcgcggat
     3721 tatgcgggtg tccgtgtgct ttatatttat atctacacgt ttcacatgcc tgctttcgtg
     3781 ctaatatccg gatttttcgc taaaagtttt ggtaagcccg gttatttaaa aaagacgatg
     3841 aaaaagctca ttttacctta tgtgtttttt cagctaatat atagtatttt ttattatttt
     3901 cttttaagta aagacaatct ttctatccaa ttccttgatc ctgaatggtc actttggttt
     3961 ttactaagtt tgtttttctg gaatataatg ttatttattt ttgcaaaaat aaagccttgg
     4021 aagtcgattt gcattgctct cttcgttgga ttggttgctg gctattttga tattattggg
     4081 gggtatttga gtttatctcg gacacttgtt tttttcccgt ttttcttagt tggctatttt
     4141 ttaaagaaag aacattttta ttaccttaaa acgcattttg tcatgattct cgggggcatt
     4201 ttcattgttt tacttctatc atttattaca tttcacccta acttaaatga taaatggttt
     4261 ttaggttcta agccttatgc aaactttgtg gaagtaaagt cgttaggtct attcattcgc
     4321 gcacttgtct acttgattag ttttggttcg attgcggctt ttttcagttt tattcctaga
     4381 aagaggttat ttttcactaa atggggtaaa aatacgttat atgtttattt gttgcatggc
     4441 ttctttatta agttttttcg tgaaggtagt caaactgact ttcaatatag cccatcaaca
     4501 tttttacttc tattcgtcgt tacttttgtt ttaacggtat tattatcaag tcgattggta
     4561 aaaatattcg ttcaaccggt aatcgaactt agggtatcta tgctgcgaga tgtgtttagc
     4621 cgcttaacaa aacgggaaag ttattaaacg tatagataga aaaaggaggt tgtattatgg
     4681 gttcaagaaa accagaaatt attatcggat taattggctc tatcattggg attctagttg
     4741 gcttttggat tattaattat ggagattcag tcacagatta tatacaaaca tttacttatt
     4801 tacctggtga attaggtaac gagttagcaa atctagggtg gattacatta atcgcatctg
     4861 tagttgcatt aattgcttcc cttctaatca aatcagctcc acgtggttgg ggtgttatct
     4921 tagtaattat cggtatcgtg ctcttcttcg ttatcggaac tgcttggatt atctccggaa
     4981 tcttaatcac tttaactggt ttaatgggta ttttcagacg ccccgttcca aaatcaaaat
     5041 attaaaaatc acctcttggt cactttgatc aagaggtttt ttcatggaca aaaaagccat
     5101 tctgcaatca gaatggcttt tatattaacc tgtaataatt ttctcttttg gtaaacgaat
     5161 cgcattttta ggttgatttt tatttcttaa actcagcatt gagtacataa taccaacgcg
     5221 cccaataaac attaatgcaa taataataat tttacccggc gtagataaat ctggtgtcaa
     5281 acctacagaa agccctgtag taccaaacgc cgaaaagact tcaaaaatga cggcaattaa
     5341 cgaggcggtc tctgtttgca ttaaaacgac tatggccgat atactcaaaa accctgctac
     5401 taacgtgacc gcgagtgact tccgcacgtc ttcttgatgc aattcccgac caaaaatgta
     5461 cacatgcttt cgaccgcgaa taaccgaata aatgaataaa atcgtaattg caaaagttgt
     5521 cgttcgaatc ccaccaccaa cagaacttgg cgatgctcca ataaacatta agaaggaaac
     5581 gagcaacaac gtagagattg acaacgcccc actatcaatc gtttgtaagc ctgcgcttcg
     5641 tgaagttgca gataagaaca tcgaattaaa gaacccgaaa tcccaacttt tcccactaaa
     5701 gaaatgatga tattcaaaca gccaaataag taaaccaccc acaattaaaa gcacaaaata
     5761 agttagcgtc gttactttca cgaaaaggga aaagcgaaac ggaattaacg tatttttttc
     5821 aaataaaaat ctacgtgttt caagcaatac aggaaaacct atcgcacctg caataatcaa
     5881 caaaatcgaa ataaattgaa cgaaataatc ataggcaaag ggcattagcg atttaccggt
     5941 gatatcaacc cccgcattgg ttacgagtga aacagaatta tataatcctt ggaacatcgc
     6001 gtcccaaaaa ttcggataca gcggaataaa gtaaatccct aaaatcaagg ctccaattaa
     6061 ctcaataccg aaaataagca ctagaatctc acgaagcatc cggaccatcc cgctcattgt
     6121 aaattggtta gtatccgtca taattaattg acgttgtttt aagccaatcc gtctttttaa
     6181 aatcaaatag aaaaacgtac taatcatcat aacaccaagt ccaccaattt ggaaaatcgc
     6241 cattaagacc caaattccag cagtactata agtctggcta acgtctactg ttgcaagccc
     6301 ggtaacacta accgaactcg ctgctgtaaa tagagtatca ataaacgaca ccttgacccc
     6361 tttttgtaga gtgaacggta agcttaagac gatggtagaa atcgtaaccg caataaaata
     6421 atacgcgata attacttgaa cgggcgtcat acgtgctaac accagtttta atcttctgcg
     6481 caattttact tcctgatcat attcaaactc ttttggtttt cttctctttt tttctcgcaa
     6541 tgatataacc acccaaacct attattatca taaccgacca gaatgtcagc ttccaaaccg
     6601 ctgaatccgg aaaatcttct ggaataattg ctacagaagg atgtgctagc gttagaaccg
     6661 ccattttcac accaacccaa ccaacaatta aaaacgctgc tgtttcaagt gtagggtaac
     6721 gctctaataa tttaaccact tgtgtggctg caaaacgaat tacgacaagt cctgcgatac
     6781 caccaaggaa catcacgata aattgcccac cgttcattcc cccaatatca aaattcccta
     6841 aatctggcaa agtaactact aatgctgctg cagctaacat ggaatccagt gcaaaagcaa
     6901 tatctgtcaa ttccacacga gctactacac cccaaaagga agttgatttg gcttctgatg
     6961 cttctttgac ttcttcttgt ttaccttttt taaggcgcca catgtgctta attgctaagt
     7021 acaataaata aaccgcgccg atagcttgta tttcccaaat ttttactaaa aatgaaatta
     7081 aaaatagtgc aataaaacga aaaacaaagg cacctactaa cccataaaac aaggcttttc
     7141 gttgtttatc gtgcggtaaa cctttaacaa ttactgccat aactacggca ttatctgcgg
     7201 aaagaattcc ttcaagtact actaaaacaa ggaaaactaa cgcatattcg ccccaaatag
     7261 aaacatccat tcctcattca ccatccttct actctatcat aaaattgtgt tttcagcatc
     7321 tggttgtacg taaaaccaga agtacaaata tgcacttctg gtctattaaa aattatttag
     7381 ttgtttctgc ttttttctta ctacgatagg aaacgaacca tccccatata ataataagaa
     7441 tcatcacacc ccagaaaatt aatttccaca gtgttgactc agggaagctg tgtggaatta
     7501 ccccaagact tggatgagct agtgtataaa taacaagctt cacgcctacc caaccaacaa
     7561 ttaaaaatgc ggctgtttcg aggcttggat aactttttag taatttaaca aattgtgttg
     7621 ctgcaaaacg aataataatg aggccgacaa gtccacctaa gaacataatc gcaaattgcc
     7681 cggtatcaat tcctccaatg tgtccccatc ctgtttctgg aagagtaatg gcaagtgcta
     7741 ctgccgcaag catggaatca atcgcaaacg caatatcggc aatctctact tttagaactg
     7801 tcatccaaaa accagagcca gctttttcct tcttctcttt ttctccgtct tttccttttg
     7861 catgtttcca aatgtgacta atagcgatat atagtaaata tgcggcacca agcgcttgaa
     7921 cttgccaaac atttgccaaa aaggaaatta agaataatgc gccaaaacgg aaaacaaagg
     7981 cacccatcaa tccgtaaaat aacgcttttt tctgttgttt atctgggaga tgtttgacca
     8041 tcacagccat aaccactgca ttatctgctg ctaaaatccc ctcaagaccg attaggacaa
     8101 gtaacaccca accgtactct aaaatcattg ctgtatccac taattctttt cctcctttgt
     8161 tctattaaaa tgtcaaagat ctcctatttt gaagaaacaa aaaagcgaga cctgcccgta
     8221 aaggcaaagg tctcgctaac atttaaaatt aaatgtgata aaaccgatga tatctctatc
     8281 atgtaatgac gactttatcc tgattaaaaa gctaatcagc gctactcccc tctgacattt
     8341 gtcaaagaac gatatatgat tacctagaga ataataccat aatatagaac ttctcgtcaa
     8401 ctaatttttc tcacaaactt tttaaacggc taagtctttc gtttttgcgc tactagctat
     8461 tttgacattg tggattgtga atagtgtcac accaatgata catgtcagaa tttcagtcgc
     8521 tgttaaggac caaatcacac ccataagtcc gaaataatgt tgtcctaaaa tgatgactgg
     8581 gataaaaatg atgccttgtg aaacagacat aatcgtagcc ggaatcgctt tcccaatcgc
     8641 ttgaaaagta ctcgtaaaca gccccgtaaa tccactgaaa agagaagata tcaacatcgc
     8701 aaccataata tgcacaccaa gcgttatcac actttgactg tcactaaata gatgcatcac
     8761 ttggaaacgg aagaggaata ccagactcga aagtaagagc acaataagcc cgatataatt
     8821 gcagtagccc gtattgcttt ttcaaaccgc gcaatattac ccgaaccgta attataagct
     8881 aacagcggaa ttatccccat gtaaagtccc atacaaataa attcagggag ctgcaccacc
     8941 cgaagcgcca cgccaaaacc tgcaactact ccttccccgt aaatcatcga ataatgattt
     9001 aaaacgagtg ttgtcacaat gaggaataat gataaaagca actctgaaac accaatttta
     9061 aacacatttt gaacgatttc ttttgttgct ttaaaccatt taaaacgaat cgataaatac
     9121 tcacttttct tctctaaata ccaagcatag taaatcagcg aaaataaact tgctaatcct
     9181 accgaaactg cggcccccac cacattaaaa tcaaaataca aaataagcaa tggatcaaat
     9241 actaaattaa caactgtagc aattatcatt ccgttcatag aaacccgcga agctccctca
     9301 gaccgaacca cctgttctaa agcaaaattc gcaataataa acgggctaca aattaaaagc
     9361 gccaacgtat aatttttcgt gtgtaaaaag ctcgttgcat ctgccccaag aaaatgagta
     9421 actggattaa tcaaaaagcc aagtatgatg gcgcagataa ttcctaatac taaacttcca
     9481 tataaaacaa aggcggatac ttgttttgcc tttattccct cttctttccc aagcaagcgc
     9541 gaaatatacg ttccaccacc tactccaaac atattaccaa tcgccatcaa aacggtgaac
     9601 atcggtaatc caagtgtcac cgcggttaac atcgacgtat catgcaacaa gcctataaag
     9661 aacgcattga taatgttata tatgacccct acagacattc caagcatcat cggaatagat
     9721 aaatgtgcta tcgctttagg aatgctcgct tttgttaaat aataattatc tgagtgtttc
     9781 attttggttc cccctcaaaa ttagttagaa ctctaactat atagttaaat ttttttattc
     9841 cgtattgtca tcaattttac taagtagatc aataaagatt ttatactcgt cagcggaaag
     9901 gatttttttc gctttatcat cttcacgcgg gaaggattca ttaaattcat ccactattcg
     9961 tttaccttct tctgttaaag tgaccacttt ttctctgcca tctcgaatgc ttggtttacg
    10021 agaaattaat tcttttttct cgagtccttg aatgaggcta gtaatacttg cgccacgcgt
    10081 ttggaagatt cgctgaagat ctttttggat aatttcattt gccgcattat catttaaaaa
    10141 ccctagaact ctagcttgtt gagttgtcag cccaaattga gctacttttg cgtccatttt
    10201 ccgtttggat ttaatcataa tcgaacgaat taacgtatcc atcgttttct ctcttctcac
    10261 gagtattcct ccttattaat tagaattcta actaattata gcgcgtttca aaaaattgtc
    10321 aagcaaaaaa acaacctatt tgcgaaagta caaataggtt gcagctatta tagtaatgaa
    10381 gttaattcga tatctggatt tttatcatta aaccaattaa ttgcgaattc attttcaaat
    10441 aagaataacg gttggtcgaa gcggtctttt acgagcatac ttcgagcggt ggatagtttt
    10501 tcatccgcat cttcttcttt gacccaacga gcgatttttt tgccgattgg ttccatccga
    10561 atttctgaat tatattcgcc acgcattctg tgttcgaata cttcaaattg caactgacca
    10621 acagccccaa taatgtattc ttccgtgcgc cacgttttaa ataattgaat cgcaccttct
    10681 tgaacaagtt gctcgacgcc tttatggaaa tgcttttgtt tcataacatt tttcgcataa
    10741 acacgcataa ataattctgg ggtaaactgc ggaagttttt caaattcaag ttttttactt
    10801 ccattagtaa tcgtatcgcc aatttggtaa tttcccgtgt cgtacaaacc gataatatca
    10861 ccagctaccg cacgattaac agtttcccgg tcatccgcca taaactgcgt tgagttagca
    10921 agcttcatac ttttgcccgt tcgcgttaac gtaacattca tgccgcgttc aaattcgcct
    10981 gaacaaattc gaataaaggc aatccggtcc cggtgagcag gattcatatt cgcttggatt
    11041 ttgaaaataa agccagaaaa cttcggatta tcagcttcaa tcacgccctc attcgattca
    11101 tgacttgaag gagatggcgc aaaatcaaca aatgtacgta agaaagtttc tacaccaaaa
    11161 ttagttaagg cacttccaaa gaatactggt gtttgttcac cggcaataat acgttcccgg
    11221 ctaaaatcat ttccagcctc atcaagtaac ataatttctt ccaatgcttg atcataataa
    11281 agtgattttt gaatagcatg tgcttctttc aaatcaccat cttcaccaag tggcaagaaa
    11341 cgctcatctt cctctgaacg atattgttca atcacacgat gatagcggtc ataaagccca
    11401 gcaagctctt tccccatacc aattggccag ttcattggat acgattcaat gccaagaact
    11461 tcttctaatt cagcaagtaa ttcaagcggc attttccctt gacggtccat tttattaata
    11521 aaagtaaaaa ttggaatccc gcgcatccga caaactttga acagttttag cgtttgggct
    11581 tcaatccctt tcgcagcatc gataaccata actgcactat ccactgccat caatgtccgg
    11641 tacgtatcct cactgaaatc cgagtgaccc ggtgtatcca aaatattaat tcttgaacca
    11701 ttataatcaa actgcatcac agaactcgtt accgagatac cacgttgttt ttcaatttcc
    11761 atccagtcac ttgtcgcaaa cttgccagat ttctttccct ttacagtccc agctgaacgg
    11821 ataacgccac cgaataataa taattgttcc gtaatcgtcg ttttcccagc atccgggtga
    11881 gaaataatcg caaacgtttt gcgtgaagca acttcttttt gcaaatcttg actcattgtt
    11941 attttcctcc tagattcatt cacattccat tagtatagca taactaggag aatttcggct
    12001 gattttttat tcaaaaatta ttttgtttgt cgtttcatga ggatcacaga taatacacca
    12061 aacacgactg caaaggcact taaaataagt aaactaagcc ctgttgtaac tgttttatcg
    12121 ctccaataaa tcgtaattcc aatcatttct tttgttgcat ccatcgcctg agtattacct
    12181 gcaaaaactt gttgtaatgg ctctttcgtc atgatttctc gaatggtaga agctccgtat
    12241 gtgaaaggaa aacatttcat cgcagtttgc accgtagccg gaagtgaacc aatgggtaaa
    12301 taaatccctg caataaaacc aataacagtc ccaacaatcg tcgaaacgga gctaaaggca
    12361 ctcgcttttt tcaccaaact ggcgataaag aacatcatac tactacaaca gaaaacatta
    12421 attaaaataa ccccaattaa acgaatccag ctctcaaaag gtaaaaatgc tccgccagtc
    12481 aaccaaatat acatttctcc aacaaaaagt gttacaacag acaacaagaa ggaagcaact
    12541 agtccactaa caatataact aataacaata cgccatctgg aagctggtgt tatcgcaaag
    12601 cttctcgcaa tacttaattc ttcatcatgt actttcaaag aaaaaacagc taacgatact
    12661 gtcacaggtg taatggataa aatccccgca atcacccaag tattcactaa ttcttgaatc
    12721 cctatcgttt ttccagaagc ctgtttgaac atctcttcca tattatttcc taaaaaaatc
    12781 gcatacagcc caataataat taaaacagtt agtaatgaca taaatacagc tgttctatca
    12841 cgaaaataaa tttttaaatt acgactaatc attggagtcc tccttaatca tcgaaataaa
    12901 agcgtcatct aagttccctt taatcacctc aaaagagtcg taaaatccta tagcctgatt
    12961 taaaatagcc aatatttcga cattttcatc tatgacatct acacgcatcg ttctgttagt
    13021 cactttaaat ggtaaattca tttttttcat tattttttga agttctgcaa cttttgcatc
    13081 gtaaaagaaa attttgtcta cagaaaaacg acttctaatg tttgctggtg tcccttgcgc
    13141 gatgattttc cccttatgga ttacagccaa ctgatccgca tctttggctt cttctaaata
    13201 atgtgtcgtt aaaaacaccg tcattcctaa ttcttctcgc aaataatcaa taattttcca
    13261 tacactcact ctagtttttg ggtccagtcc ggtcgttggc tcatctagca gcaaaatttc
    13321 tgggtcatgc ataattgccc tagcaatttc cgcgcgacgt ttttgaccac cagacaattt
    13381 ttcaaaacgc cgatttaaaa tatcctcaat gcccataata gaagaaacta gcgctaatcg
    13441 ttccgtaatt tctgcttttg ttttcccata taaactagca cgattatata aattttcgcg
    13501 caccgtgagt aagtcatcca acacattttc ttggaaaaca acgcctagtt tttgtctaaa
    13561 taatttacgg tttttaaatg tcaatttttc atcatcaatg aaaatttctc ccgaagttgg
    13621 ttcgctttct gtgcaaatca tgctaagcgt agtcgattta cccgcaccat tttcgcctag
    13681 aaaagcaaat aacgagcctt tttcaacttc taaattaata cctttgacag cctcgatttt
    13741 gccaaatttt ttaactacat tgatcaattt tatcattttg tctccctttc tcgcatttct
    13801 gctagttttt gattaatttc attactgaat ttcacatcac ggaagctgaa gaaaatatgc
    13861 attacaagga aagtcacaca aataaaaccc aaaataatca taaacccagc tatgttatga
    13921 taccaatcca gcaaccaacc aagccctaaa attgctgcgc caataaagag gaagaaagca
    13981 atcaaacgac tgtaaaaagc acgtctcgtt ttcactgagt tattaaataa taattgctgt
    14041 atgaatgttg tcacaatact aaaacctaac ataataaaaa tatcccggat tgcgaccgtt
    14101 tctgattctc cagttgcgat gtaagagcag atcatcgtga taatagaggc agaaaaaata
    14161 aggcatgctg attgtataaa ttgaattagt ttagtactca tttccgctta cctcccatgt
    14221 ttaatttttg ctttaaaacc ttcgcgtact gccgagaaat aattactttt tctcgattta
    14281 aaagtttcgc ttcaaattta ccgttgaagc caggggcaat cttttcaatc cattcaatat
    14341 ttaagatcat tgatttcgaa catctgaaaa aagaactctc cttgaatttt tcttccagtt
    14401 catataattt ccaatggatt tcataaattt ctttttccgt ataaacaaaa atcttacttt
    14461 cgactgcctc aaaatataaa atggcttttg gttctagtaa ataagtggct ccatcctttt
    14521 tgactgagat tttttcagct gactcttcta ttcctattac catgttcgtt acttcttcta
    14581 aattatcggg atggcaatac acatccactt caccaactgc taaattatta ttttgcttca
    14641 catggaattt catctggttg cctccctttt tcttttatta taaacgccat gtcaaaaact
    14701 acaagctgat ttcagtaaca tgcattttta actaactaag atgcaaaaaa ctcggtagta
    14761 ctataatagc actaccgagt tttccttaat tatttacttt cgcaacaagt gcttccactt
    14821 tatcctcaaa atctgctggt ttcattttag atgggaaacg ttcaacaact tctccatttt
    14881 catcaattaa gaatttcgca aagttccatt ctactttttt accacccgtt tgttcggtta
    14941 aatatttata aagtgggctg gcatctttgc cttttacttt aattttggaa aacatttgga
    15001 aagtcacacc ataattcatt tggcaaaatt ctaaaatttc ctcatcactg ccaggatctt
    15061 gtcgcaaaaa ctggttacac gggaaaccga ggatttcaaa attagcgcca cccaattttt
    15121 tatacattgc ttcgagacct tctaattggg gtgttaagcc acatttactc gcagtattca
    15181 cgatgagtaa taccttacct ttataatcac ttaaagctat ttctttgcca ttcattgctt
    15241 tttcagaaaa atcatggaca ttcatatggg attcctccta tttcaatata tttgaaaata
    15301 aatatgcata aactaatttt tctgtatggt aaagtgaatc gcggtgtgtg cgttcatatg
    15361 catggctagc atcaatacct ggtccaatca aaccatggac aatatcatta ccagcattaa
    15421 ttgccgcact cgcatcagac gcataaaacg gataaatatc cactttataa tcaatattat
    15481 tgcttttagc aagctccact aaatgtttgc gcaaaccaag gtgatacggg ccactaccat
    15541 cttttgcaca aatagaaaca gtgtattcat cagacgtttg tccgtcacca agggctccca
    15601 tatcgacagc taaatattcc accgtttcag acggaatgtt agaattacca ccatagccaa
    15661 tttcttcatt attagagatg aggaaatggg ttgtatgagg aagctccagt ttattttcgt
    15721 gaatatgatt gattagttgt aataaaatcg cgacacttgc tttatcatcc aaatggcgag
    15781 atttgatata ttcatcatta ataatttgca cgcgcggatc aaacgaaaca aaatccccta
    15841 cttctattcc aagcgcacga actttgtctg catctaatgc ttttacatct aagcgaactt
    15901 ccatattttt gtcattacgc tcagcagtcc cagcatcttt atagacatgg acagaagttt
    15961 gatgcattaa aatggtgcca ctatacaaat ctccatcact tgtctcaatg gtacaatatt
    16021 cgccttcaat cgcgttaaaa cggtagcctc caattaaggt taaaagtaat cgtccgtctg
    16081 ctttaatttc tttgaccatt gcacccagcg tatccacatg ggcggttagc atacggtgtt
    16141 tcgtgtcgtc tttcccagga agcgttacga ttaatccacc tttgttgttt aaatggtaag
    16201 ggatttttga agcatctaaa tcttttgcca gtttttcgat gattttccct gtattgccag
    16261 ttgggcttgg gatagatgtt aattctttaa ttttttgcat tgtttctttt gtatttggtt
    16321 cgtatgacaa aaaaattcct cctttagttc gctttcttct attatattat agcgcttatc
    16381 ttgaatatgc gcatttctta ggattaactt ttttcccaat ttagtccttt tatatgctat
    16441 aattcggtag acaaaaaggg agggaatttt ttggaacaaa caaaagtaaa agccgttacc
    16501 atcgccgtat ttgtcgcaac atttatggca gctattgaag gtaccatcgt gagtactgcg
    16561 atgccaacga ttgtaagtca gttggacggc atagagttaa tgaactggat tttttctgtt
    16621 tatttgctaa catcagcagt gacggttccg atttacggaa aactgtctga tttgtatgga
    16681 cgaaaaaata tttttgtgat tgcgacaatt atttttatta ttggttcatc actttgtgga
    16741 tttgcacaaa atatggaaca attaattatt tttcgcgcga tccaaggtat tggagcaggt
    16801 gggattttac catctactat gacgattatc gcagacgtgt atccatttga aaaacgagca
    16861 aaagtacttg gcttcatggg ttccgcttgg ggtatcgctg gcgtatttgg accacttgtt
    16921 ggaggatttt tagtagacca actttcatgg cattggattt tcttcatcaa tgtcccaatc
    16981 ggtattttaa caatcctact tattttgctt tatttacgcg aaaaagtgga acatgtcaaa
    17041 ctaccaattg actatttagg tgcctcgttc tttacggtgg ctctgcttgg attattattt
    17101 gcgttacagc gagccgggga atcactcaac tggacagaac cgctcgtcgt tattcttttt
    17161 gccgtttcga ttgtgttatt tattgctttt tattttgtcg aaaaacgtgc aaaagatccg
    17221 attatgccat ttgtattatt taaaaaccca gtggtgttaa ttgggaactt aattggtttc
    17281 ttgattagtg ccttcctaat tggaattaac gtgtatattc caatgtgggc acaaggaatg
    17341 cttgggcacg gggctacgat tgctggattt atgcttgcac cgctttcagt tacatggata
    17401 attggttcat ttatcggcgg caaactttta atgacgcttg gaaatcggca tacggttggc
    17461 attggcgttt taattactgc tgcaagtgga ttaattttag ccttattccc cgcttccaca
    17521 aatgatatct tcttctattt aaatagtgca tttatgggat ttggttttgg gataatcttt
    17581 acaacaacaa ctgttaccgt tcaagatgca gtaccgcgat tccaaactgg tattgctaca
    17641 gcttctaaca cactgtttag aacagttggt caaacaatcg gggtcgctgt ctttggaact
    17701 atcttcaact cagttcttac aagcgaattc cgcgctgcag ctggcagtga agtaaatcgt
    17761 agtaatctaa accaactaat tagcccacaa acttctggca acgttagtgc agaccttgtt
    17821 gatccgcttc gagatatttt atatagcggg cttcatatgg ttttctgggt tatgtttgct
    17881 tgctgtatcg ttagttattt tattcatttt atcttaccga aaaaacatat ttccggtga
//
LOCUS       DABQVC010000039        17907 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.039,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000039 DABQVC010000000
VERSION     DABQVC010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17907
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.039"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            148..642
                     /locus_tag="IBJ56_000937"
     CDS             148..642
                     /locus_tag="IBJ56_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HAM3417199.1"
                     /translation="MKIQKLVLCAMLIAMCVIGANIKLMGSVAFDAAPAFIGTLLLGP
                     MYGAVLGIFGHLTSALLAGFPLTLPIHLIVAGMMGVTMIAYGFTRQKLAEKNQLVAVS
                     VSSIVAFVFNCPLSLLALYPLMHQAVFVLFPVLAIGSICNIFVAEVVYQVLPERWKRR
                     IAGY"
     regulatory      636..813
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            975..2333
                     /locus_tag="IBJ56_000938"
     CDS             975..2333
                     /locus_tag="IBJ56_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HAM3417200.1"
                     /translation="MNKILIAAASSGTGKTTITLGIMHALKKRGLRVQPFKVGPDYID
                     TNYHQAITGVASINLDSFLIDDDAMLATLFQKHGESADISVIEGVMGLFDGLGIDRDN
                     SSTSFIAKCTKTPVILVVDGKAISTSAAAIVDGFNRFDPELTIAGVIINRVASENHFS
                     LIKGAIERYTDVPVLGYLPKNAAVALPERHLGLVPKEEMTELETKWELLGDLIAEHVD
                     LDRLLAISKTGAKLTVHPPEIQVPDFSGVRVAYALDAAFHFYYQDNLDFIRSTGATLI
                     PFSPLEERKVPDADFIYIGGGFPEVFAERLAKNKSMRESILAAHEQGKPIYAECGGLM
                     YLGSSLEMEAESYEMVGVFDGVSKMTTRLRKFGYCIAEPLEDTLLGKKGTAIRGHEFH
                     HSVFETTEPTRMKLTKKRDGKIVKEWHGGYQKGNTFASYLHIHFYQNLLIITHMFGAI
                     ER"
     gene            2330..3277
                     /locus_tag="IBJ56_000939"
     CDS             2330..3277
                     /locus_tag="IBJ56_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HAM3417201.1"
                     /translation="MILLFYTSSFILDCLLGDPYSWPHPIKAIGNLIKWLTIILRKIF
                     HGKSLYFAGGLLFVLTVGMTGVVSWFILFLSAKIAYWLYVAVFVYLGYTTLAMTCLAK
                     EARKIQRTLADGDLAAARVQVGMIVGRDTDKLTAEEISKATIETVAENTADGVIAPLF
                     YLFIGGPVLALMYKAVNTLDSMVGYKNEKYRAIGFVSAKMDDIANFIPARLAWFFLVI
                     ASFILRYDGRASWQIGLRDRKNHTSPNCAYPEGAVAGALGITLGGTHEYFGETVIKPT
                     IGSGNKPVSEKEISQTIHLLYTASTIAFIIFASIYLLLF"
     gene            3290..3922
                     /locus_tag="IBJ56_000940"
     CDS             3290..3922
                     /locus_tag="IBJ56_000940"
                     /EC_number="5.4.99.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-8 methylmutase"
                     /protein_id="HAM3417202.1"
                     /translation="MNYIKNPAKIEEKSFEIIQQIINDIRPDYTFQNKLEEAIIKRAI
                     HTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCY
                     VSDPETMEIAKQHGITRSMAGIKLASLKDGPKLFVLGNAPTAVYKIIEMTESGELQAD
                     AVVAVPVGFVGAAECKEEILETDIPAIVARGRKGGSNLAAAIINAILITM"
     gene            3938..5059
                     /locus_tag="IBJ56_000941"
     CDS             3938..5059
                     /locus_tag="IBJ56_000941"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HAM3417203.1"
                     /translation="MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQV
                     TTTGGTILEIPVAYQKFSKDKATAAVQKDGGDDIDATNGMWIFVDVDLTDNAEVVLDG
                     GVGIGRATQKGISVAVGEAAINPAPRKNILATVRESLGENRGAKILVYAPEGEERAKR
                     TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLDQIILVPGNYGDD
                     FVQNTLGFSSGNIVSMSNFVGYMLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKD
                     ADARAEILVANLALLGAPLSLLQAVEKCNTTEAAGELIEEAGFTQVYDVIVQKIKARS
                     ERFLKFTKPSVEVDVVTFSTERGLLAATKDIDVLREEWR"
     gene            5056..5652
                     /locus_tag="IBJ56_000942"
     CDS             5056..5652
                     /locus_tag="IBJ56_000942"
                     /EC_number="2.1.1.289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-7 (C(5))-methyltransferase"
                     /protein_id="HAM3417204.1"
                     /translation="MITVVGIGPGDTNLVINEAKQVLSTAEIVYGSTRQLQEITELTT
                     ATPMLLPKKLADLKNIPHQNKNVVILASGDPLLYGIGNWALANFSEDVRIVPGISAIQ
                     MMFHRIQLPMNDCFITSSHGKTPNFDFLLQHEKIAMVTDTIIGPYEIAAEILQRGLKK
                     ILFIGENLSSKEERIHKLKPEQVAKKYDMNVVVIVDEG"
     gene            5642..6211
                     /locus_tag="IBJ56_000943"
     CDS             5642..6211
                     /locus_tag="IBJ56_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating cobalt-precorrin-6B
                     (C(15))-methyltransferase"
                     /protein_id="HAM3417205.1"
                     /translation="MKDEVFIRGKVPMTKAEVRAASIDLLNLDDTSKKLLDVGAGTGS
                     VGLQVACNFPKIQVTAIERNPDAVDLIKQNQAKFGLENVTVIEAYAPIELPEKETFDA
                     IFIGGSGGNLTDIIDWSLAHLNPGGGLVLNFILLENALTAMNHLEKLTVSELTMKQIQ
                     VSSWHKLGAGHYFEPQNPTVIIGCKKLEE"
     gene            6217..6966
                     /locus_tag="IBJ56_000944"
     CDS             6217..6966
                     /locus_tag="IBJ56_000944"
                     /EC_number="2.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-4 methyltransferase"
                     /protein_id="HAM3417206.1"
                     /translation="MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLE
                     YCKPDCEIHNSASMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRS
                     IPFTCTPGVSSFLGAASSFGVEYTVPEVSQSVIITRMAGRTPVPSRESLRSYAAHQTS
                     MVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGI
                     TKTALIMVGDFLGEEFYYSKLYDKDFKHEYR"
     gene            6953..7984
                     /gene="cbiG"
                     /locus_tag="IBJ56_000945"
     CDS             6953..7984
                     /gene="cbiG"
                     /locus_tag="IBJ56_000945"
                     /EC_number="3.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin 5A hydrolase"
                     /protein_id="HAM3417207.1"
                     /translation="MNIDKLAIIAVTERGRDLAITLTKTVAATIFVPGKHCNEQTNSL
                     TPDFGTAMREIFTKYQALICIMATGIAVRTLAPAIEDKLSDPAVLVMDEHGKFIISLL
                     SGHVGGANELTEQIAMITGGAAVITTATDRANVAAIDNIAKQLNGYLPDFKATTKRIN
                     GLLAAGKEVGLYIDEPLNIDTRGFTMEEVSPQVYISTKYKLQVATHERIQLVPKQFIL
                     GVGCRKGVSAETIDAAFTHFCEQENIHPRAFREIHSITLKAEEPAILHLAEKWRVPFI
                     VHPAEELQTVAGKYPTSAFVQKTVQVGNVALSSADIGSNGNVVTSRFAENGVTFAAGK
                     LTKNSEVAK"
     gene            7981..8706
                     /gene="cobJ"
                     /locus_tag="IBJ56_000946"
     CDS             7981..8706
                     /gene="cobJ"
                     /locus_tag="IBJ56_000946"
                     /EC_number="2.1.1.131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HAM3417208.1"
                     /translation="MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELIK
                     DKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEKSNPDLE
                     VKVIPGITASIGAAAVLGAPIMHDFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYN
                     PRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMRDIDYELVDMTTM
                     VIVGNKETYVKNGKMITPRGYTL"
     gene            8703..9455
                     /gene="cobK"
                     /locus_tag="IBJ56_000947"
     CDS             8703..9455
                     /gene="cobK"
                     /locus_tag="IBJ56_000947"
                     /EC_number="1.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6A reductase"
                     /protein_id="HAM3417209.1"
                     /translation="MIFVLGGTSDSLAISDWLTEKKQAFILSVATDYGETLAKQHAEN
                     VFCGRLSKEEMLLKWHATKVHLVIDATHPFATIVSETAMEACKEADIPYIRFERTSEQ
                     TDNTYLVADIEEACAVAMKLGKRIFLTTGSKNLPEFVAGLNNRHIIARILPVSDVIRS
                     AEELGLVADQIIGMKGPFTKEANRTQLEMTGADVLITKESGKQGGFQEKLAAAAELNI
                     PVIVIRRKKLNYPIEINHLSELPEILTQLEVY"
     gene            9455..10936
                     /gene="cobA"
                     /locus_tag="IBJ56_000948"
     CDS             9455..10936
                     /gene="cobA"
                     /locus_tag="IBJ56_000948"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HAM3417210.1"
                     /translation="MGKVMLIGAGPGDAQLLTVKGLAALQKADVIVYDRLVEPAMLQE
                     RKASCKLIYVGKEPLHHPIPQEEIEQILVKEAATNELVVRLKAGDPYVFGRGGEEGET
                     LYKAGIPFEVIPGITSAIGGLAYAGIPVTHRNFASSFHVITGHLKKGRDPLDWEALAR
                     LEGTLVFLMGMTNLPNICANLLENGRKAETGVAIVQWASRGKQLTVTGNLQNIEQKVA
                     ESGISSPALIVVGDVVSLRPQLNFFEEMPLFHTKVLLPRARAGKSMLAEQIRDLGGEV
                     TMYPNIQVVDVVPTKTKEELSEVSELLFTSKEAVERFFDYLAQLDLDIRSLKNTHLTA
                     IGKQTKEAFSEKGIIPDSFIKRRSTELILEHLPRLQKNVSNLIIGSIVDTAEVNAILA
                     EVEAMEMMPLYDMRPVTERPFDLASFEQVCFSSSRSVQNLLDVLTTEEKAILQTKTIL
                     SIGRFTSATLASFGINNFIEAESATPESLIELIQKTKLEGVPQ"
     gene            10933..11718
                     /locus_tag="IBJ56_000949"
     CDS             10933..11718
                     /locus_tag="IBJ56_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sirohydrochlorin cobaltochelatase"
                     /protein_id="HAM3417211.1"
                     /translation="MKKAILVVSFGTSYPETREKTIEACEKKVAQEFPDYNVFRAFTS
                     NKIIKKLKTRDNMHINTPSQALNQLKELGYKEVIIQSLHIISGGEFEKITAQVEKFKP
                     DFDSIIVSQPLLDSMEDYEKAIEAIRHQMPPLKEQEALILMGHGSKHRAFSAYACLDH
                     MLLNEPIYLCAVESYPGLDQVIERLQQVNIKKAHLMPFMLVAGDHATNDMASDDEDSW
                     KSTLEQAGIQTECHLQGLGENPLIQAQFIDHIHTAIERVKARG"
     gene            11711..12421
                     /locus_tag="IBJ56_000950"
     CDS             11711..12421
                     /locus_tag="IBJ56_000950"
                     /EC_number="2.1.1.151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-factor II C(20)-methyltransferase"
                     /protein_id="HAM3417212.1"
                     /translation="MAKFYGIGTGPGDSKLVTMEAAERLGNLEILYTPQPKKGGESLA
                     KKIVSPYLKDTLIIKERHFPMSYNKEEKMLAWKEIAEEIKADVQNGHDVGFITLGDPM
                     VYSTYSYLLELLKGEIETVTLAGISSFSNIASKIELPLVMDEESFAVIPVTAGAEKIE
                     QALTLFDTVVLMKAASNLPLLTTLLKKLNLLDAAVVVSDVAMATEKITYGMNEINPDE
                     KMSYFTTIIVKKRREQYK"
     gene            12502..13152
                     /locus_tag="IBJ56_000951"
     CDS             12502..13152
                     /locus_tag="IBJ56_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464729.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HAM3417213.1"
                     /translation="MHIMEGFLPVKWAVFWFIVFIPFLVLGLIRIRKLIALDKNNKLL
                     LALCAAFIFVLSALKIPSVTGSCSHPTGVGLATVMFGPLVVSVLGVIVLLFQALLLAH
                     GGITTLGANAMSMAVIGPMVGFVVYKLARKLNCNKSVSIFLCAMTADLATYLTTSVQL
                     GVVFPDPASGMMASILKFMAIFCVTQVPIAIAEGLLTVVMYNLISKNLPEKVAQLR"
     gene            13149..13445
                     /locus_tag="IBJ56_000952"
     CDS             13149..13445
                     /locus_tag="IBJ56_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     substrate-binding protein"
                     /protein_id="HAM3417214.1"
                     /translation="MKKININVILILLVVLLMVSPFFFNKTGEYGGSDGEAEAEITKI
                     DPSYEPWFEPLYEPKSGEIESLLFTLQGCIGTGIIAYVIGVSRGKRKAENDVNH"
     gene            13432..14109
                     /locus_tag="IBJ56_000953"
     CDS             13432..14109
                     /locus_tag="IBJ56_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     transmembrane protein"
                     /protein_id="HAM3417215.1"
                     /translation="MLTIDKYAYQNRWIAFSPSLKALFYVAILILALTGPVLIQAILF
                     FCMVPLTLYVVKIHFKQYLKWLLLPFSFLLFSLLSILISISKDPSSFLASISIGSLYL
                     GVSDVTITTATQVFFRSIACLAATYFFVLTVPVVQLTKVMKRIFIPKVLIELTILIYR
                     FIFIFLEEAAAIRKAQSLRFGYHGIKNSYRSFGMLVNTLFNRVMKRYNEMVITLDVKL
                     YQGEFHI"
     gene            14122..14928
                     /locus_tag="IBJ56_000954"
     CDS             14122..14928
                     /locus_tag="IBJ56_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3417216.1"
                     /translation="MLKTEHISFQYEDGKQALTDVSIDLEKGNIIGLIGANGSGKSTL
                     FMQLLGINKPSDGTVYFEGKPLAYTKKALFALRKKVSIVFQDPDQQIFYSNVRDDVAF
                     ALRNLGVSETEVEARVTKVLDIVGAKDFQHKPVQYLSYGQKKRVAIAGALVLDTDWLL
                     LDEPTAGLDPIGKKIMMEIIERLASQGKKILISSHDIDLIYEICDYIYMLKDGSVLTD
                     GETSNVFLEKSNVEQAGLVQPWLIKLHQQAGYPLFKKEADFFAHTGKVTN"
     gene            14928..16463
                     /locus_tag="IBJ56_000955"
     CDS             14928..16463
                     /locus_tag="IBJ56_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HAM3417217.1"
                     /translation="MVKQIMIQGTASDAGKSVLVAGLCRLFKNKGKRVVPFKSQNMSL
                     NSFITATGDEMGRAQVFQAEAAGVFPDVRMNPVLLKPTNDRQSQVIFMGAILDNMDAV
                     TYHDFKQTLIPKIQAVYQSLADENDIIVLEGAGSPAEINLNDRDIVNMGMAKMVDAPV
                     VLVADIDKGGVFASIYGTIMLLNEEERARIKGVIINKFRGDVALLQPGIDMIEELTNV
                     PVIGVIPYANLQLEEEDSVSLSGKNYVPDSNALLDIAIICLPRISNFTDFHSLEIQPE
                     ISLRYIRNLADFGKPDLVIIPGSKNTLEDMAFLEESGLKKAIQNFAENAGKVIGICGG
                     YQMLGKKMLDPNQVESKQLEIAGLGLLDTETIFLDQKRTTQITGVTHSGEAVEGYEIH
                     MGETKRGESTSPFCEIKAVNGNEETHQDGAISVNKNIIGTYIHGIFDNDVFLGNLFDE
                     LLTRKNKSVYPHEIINLKEHKEQEYDKLAALLEANIQMDQLEKIMKGEKICVSTQKPA
                     IKE"
     gene            16427..16993
                     /locus_tag="IBJ56_000956"
     CDS             16427..16993
                     /locus_tag="IBJ56_000956"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HAM3417218.1"
                     /translation="MRIYTKTGDKGMTRIIGGSKVSKDNIRIDAYGTLDELNSLIGYT
                     ITTLGAEPEIQAELEQIQQQLFDAGGDLATEEGKRAYKLTSEPVAWLEDRIDIYADEP
                     PEIEKFILPGGTQAASLLHMARTVTRRAEREIVGMLKIASSNEEVLKYVNRLSDYFFA
                     VARVVNYRAGEKDIFYKNSELVFRNKKK"
     gene            complement(17038..17505)
                     /locus_tag="IBJ56_000957"
     CDS             complement(17038..17505)
                     /locus_tag="IBJ56_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAM3417219.1"
                     /translation="MTKISSKSLLLFMAMGLVSGLLSPIQTSINSQLRLTVGSPFVAS
                     FISFLVGTTLLTLVCLIVERRLTFQLKGVGRIPWWVFTGGALGVLFVTSNILLLPLLG
                     SAMTVVLALCGQMIIALIIDHFGFFGVIPHPINRYRMIGVLLMLVGVFLIQRF"
     gene            complement(17520..>17907)
                     /locus_tag="IBJ56_000958"
     CDS             complement(17520..>17907)
                     /locus_tag="IBJ56_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAM3417220.1"
                     /translation="INTRLSTYTKSPFLASWVSFMVGTTVLLIVCLFTQKSWPISSEM
                     IASNPWYIWVGGGTLGVIFLTANILLLPRLGSALLVMITVCGQMIMAIIIDNFGLFQV
                     PMHEINIERLLGVILMFGGIYLMQRF"
BASE COUNT         5781 a         3266 c         3957 g         4903 t
ORIGIN      
        1 ctatttttgc catataaaac agaaaaaaag ggattttaaa agcttgcact attttgtttt
       61 cagtgctcta agtgaccttg taccagtggt ttaacaggga tataatgaaa tggaaataac
      121 gctttcatga gagggtgatc ttttcaattg aaaattcaaa aattagtctt atgtgcgatg
      181 ttgattgcaa tgtgtgtaat tggcgcaaac ataaaattaa tgggttcagt tgcatttgac
      241 gcagccccag cttttattgg gactttgctg cttggtccga tgtacggagc agtgcttggg
      301 attttcggtc atttaacatc agcattacta gcgggttttc cgctcacact accaattcat
      361 ttgattgttg ctggaatgat gggcgtaacg atgattgctt atggctttac gcgccaaaaa
      421 ctagcagaaa agaatcaatt agttgcggtt agtgtttcta gtattgttgc ttttgttttt
      481 aattgtccat tatcattact tgcactttat ccattaatgc atcaagcggt gtttgttttg
      541 ttcccagtgc ttgctattgg ttcgatttgc aacatttttg tcgcagaagt cgtttaccaa
      601 gtattgccag aacgctggaa aagacgaatt gccgggtact aaacaactaa ataggtgaat
      661 atattaatcc gggaaagagg tgaaaatcct ctacaggccc tagctactgt aatacggacg
      721 aaaaccaaac atatgtcact ggaagcaatt ccgggaagac tggtgagtag gatgatgtta
      781 agtcaggaga ccgcttttat attcgatatc caaaaacaac ttctaaggga gcgagttgtc
      841 ttgattaagt agattttcac gatggggaag tttctttgtg ctacaaggaa atagcttatt
      901 tgcgtaaatc tcaaaaagac gccaatgttc tgtttggcgt ctttttttat ggctaaagtg
      961 aaaggtgaaa aaagatgaac aaaatcttaa ttgcagctgc atcaagtggt acaggtaaaa
     1021 caacgatcac acttggaatt atgcacgcgc taaaaaaaag aggtctgcgg gttcaaccat
     1081 ttaaagtagg tccagattat attgatacaa attatcatca agcgataaca ggcgttgctt
     1141 ctatcaattt agacagtttt ctgatagatg atgatgcgat gctagctact ctttttcaaa
     1201 agcacggaga gtcggcggat atttccgtca ttgaaggtgt aatgggtctt tttgatggac
     1261 ttggtattga tcgtgataat tcgagtacat cttttattgc taaatgcacg aaaacgcctg
     1321 taattttagt cgtggatggt aaagcgatat ccacttctgc ggcggcaatt gtggatggat
     1381 ttaatcgttt tgatccggaa ttaaccattg ctggggtgat tattaatcgc gttgcttcag
     1441 aaaaccattt ttcattgata aaaggggcga ttgaacgtta tacggatgta cctgttttag
     1501 ggtatttgcc gaaaaatgcg gcggtggcac ttccagaacg tcatctcgga ttagtgccaa
     1561 aagaggaaat gacggaatta gaaacgaaat gggagttact tggtgatttg attgcggaac
     1621 atgttgattt agataggttg ttagcaatta gtaagactgg tgcgaaattg accgtacacc
     1681 caccagaaat acaagtaccg gacttttcgg gagtgcgcgt tgcttatgcg ctcgacgccg
     1741 catttcattt ttactatcaa gataacttgg attttattcg ctcaactgga gccacgctga
     1801 ttccgtttag tccgttagaa gaaaggaaag ttccggacgc tgattttatt tatatcggtg
     1861 gtggatttcc ggaggttttt gcggaacggc tagcgaagaa caaatcaatg cgcgaatcga
     1921 ttttggcggc gcatgaacaa ggcaagccaa tctatgccga gtgtggcgga ttgatgtatc
     1981 ttggttcgag tttagaaatg gaagctgaat cctatgaaat ggtaggggtt tttgatggag
     2041 ttagtaagat gacaacgcgg cttcggaagt ttggctactg tatcgccgaa cctttagaag
     2101 acacactact tggtaaaaaa gggacagcta ttcgcggtca tgaatttcat cattctgttt
     2161 ttgaaacgac cgaaccaaca cgtatgaaat taacgaaaaa gcgggatggc aaaattgtca
     2221 aagaatggca cggcggttat caaaaaggta atacgttcgc tagttacctg catatccatt
     2281 tctatcaaaa tctattgata ataacgcata tgtttggagc gatagagcga tgatattgtt
     2341 attttatacg tcatcattca ttttagattg cttattaggt gatccatata gctggccgca
     2401 tcctattaaa gcgatcggca acttgattaa gtggttgact attattttac gaaaaatctt
     2461 tcatggtaaa tcactgtatt ttgccggtgg attgctattt gttctcacgg ttggtatgac
     2521 cggagttgta tcctggttca ttctatttct tagtgccaaa attgcttact ggctttacgt
     2581 agctgttttt gtttacttag gctatacgac gcttgcgatg acttgccttg cgaaagaggc
     2641 tcggaaaata cagcggacct tggcggacgg ggatttggct gctgcaagag tgcaagtggg
     2701 aatgattgtt ggtcgggata cggataagtt aaccgcagaa gaaattagta aagcgacgat
     2761 agagactgtg gcggaaaata cagcggatgg cgttatcgca ccactttttt acttattcat
     2821 tggtgggccg gtacttgctt tgatgtataa agcggttaat acactggatt cgatggtcgg
     2881 ttataaaaac gaaaaatacc gcgcaattgg ttttgtttct gcgaaaatgg atgacattgc
     2941 caattttatc ccagcgagat tagcttggtt tttccttgtc attgcgagtt ttattttaag
     3001 gtatgacggg cgtgcttctt ggcaaatcgg gcttcgagat cggaaaaatc atacgagtcc
     3061 taattgcgct tatcctgaag gtgcagtagc aggagcgctt ggaatcacac ttggtggaac
     3121 gcatgagtac ttcggtgaaa cagtcattaa accaaccatt ggaagtggaa ataaacccgt
     3181 ttcagaaaaa gaaattagcc aaacgattca tttgctatat acggcttcaa cgatcgcttt
     3241 tatcattttt gcaagtattt atctactatt attttaaagg agtggcaaga tgaactatat
     3301 taagaatcca gccaaaattg aagagaaaag ctttgaaatt attcaacaaa ttattaatga
     3361 tattcgtcca gattacacat ttcaaaacaa gttagaggaa gcgattatca agcgtgcaat
     3421 acatacgacg gcagattttg attacttaga tagcctcgtt tttcaacaag atgccatcgc
     3481 gaaaatcatt catgttcttc aaaataaagg aactattttc acggatacga atatggcact
     3541 tagtggaatt aataaacgac ttttagatga acttgggtgt aaatatcatt gttatgtgag
     3601 tgacccagag acgatggaga ttgccaaaca gcatgggatt acacgctcta tggctggaat
     3661 taaactcgct tctttaaaag atggaccgaa actatttgtc ctcggaaatg cgccaactgc
     3721 ggtgtataaa attatcgaga tgacagaaag tggggaattg caagcagatg cagtagtggc
     3781 agtaccggtt ggttttgtcg gagcggctga atgtaaagag gaaattttag aaacagatat
     3841 cccagccatt gtcgcacgcg gtagaaaagg cggtagtaat cttgctgcag ctatcattaa
     3901 tgcaatcttg attacgatgt aaagaaggcg acgagtaatg gaagatttta tttattataa
     3961 cggcaaaaaa taccgtaaag gctatacgac tggtacgtgt gcggctgctg ctgctaaagc
     4021 ttgtgtggaa atgattctaa cgcaagaaga agtgagtgcg gtacaagtca caactactgg
     4081 cggaactatt ctggaaatcc ccgtggcgta tcaaaagttt tcgaaagaca aagccacagc
     4141 agcggttcaa aaagatggtg gcgatgatat tgatgcgaca aacggaatgt ggatttttgt
     4201 agatgttgat ctaaccgata acgcggaagt cgtattagat ggtggtgttg gtatcggtcg
     4261 cgctacacaa aaaggaattt ctgtggcagt gggagaagcg gcgattaatc cggcaccgcg
     4321 gaaaaatatt ttagcaaccg tacgcgaatc gcttggcgaa aatcgtggtg caaagatact
     4381 agtctatgca ccagaaggag aagagcgcgc gaaacgaacc atgaatagca acttagggat
     4441 tatcggtgga atttctattt taggaacgac tggcattgtt acccctatgt cggatgaagg
     4501 ctggaaaaaa tccttatcga tggagcttga aatgaaacgg aatcaaggtc tcgaccaaat
     4561 tattcttgtt cccggtaatt acggggatga ttttgttcag aatacgcttg gtttttcaag
     4621 cggaaatatt gtttccatga gtaatttcgt tggttatatg ttaaaagaaa cacagcgtct
     4681 agctttcaaa aaagtgctaa tggttggtca ttttggcaaa ttggtgaagg tttcagcagg
     4741 gatttttacg acgtacagta aagatgcaga tgcgcgggcg gaaattttag tcgctaattt
     4801 agctttgctc ggcgccccgt tatcgctttt acaagcagtg gagaagtgca atacgacaga
     4861 ggcagcaggc gaattaattg aagaagctgg ctttacccaa gtatatgacg tcattgtgca
     4921 aaaaatcaaa gcaagatcag aacgattttt gaaattcacg aaacctagtg tggaagtcga
     4981 tgtagttact ttttcgaccg aacgtgggtt gcttgctgca acgaaagata tcgatgtact
     5041 ccgggaggaa tggcgatgat tacagtagtt gggattggac caggagatac aaatttggta
     5101 ataaacgaag caaaacaagt gttaagtacc gccgaaatag tgtatggatc aacaagacaa
     5161 ttacaagaaa tcacagaact aacgacagca acgccaatgc ttttgccaaa aaaactagca
     5221 gatttgaaaa acatcccgca tcaaaacaaa aacgtggtta ttctagcttc cggagatcca
     5281 ctattatatg ggattggcaa ctgggcgctg gcaaattttt cagaagatgt ccggattgtt
     5341 ccgggaatta gtgcgattca aatgatgttt catcgaattc aattaccgat gaatgactgt
     5401 tttattacga gcagccacgg taaaacgcca aacttcgact tcttgttaca acacgaaaaa
     5461 atcgcgatgg taacagatac aatcatcggt ccatatgaaa tcgctgctga aattttacaa
     5521 cgtggattaa aaaaaatcct gtttattgga gaaaatttga gttcaaaaga ggaacgaatt
     5581 cataagttga aaccagaaca agtagcaaaa aaatacgata tgaatgtagt ggtgattgta
     5641 gatgaaggat gaggttttta ttcgtggtaa agtaccgatg acaaaagcag aagtgcgagc
     5701 ggcaagcatt gatttactta acttagatga tacgtcaaag aaattactag atgttggagc
     5761 ggggactggg agcgttggtc ttcaagttgc ttgtaatttc ccgaaaatcc aagttactgc
     5821 gattgaacga aacccagatg cagtggattt aattaaacaa aatcaagcga aatttggatt
     5881 agaaaatgta acagttatcg aagcatacgc gccaattgaa ttgcctgaaa aggaaacatt
     5941 tgatgctatt tttattggtg gaagtggtgg caatttaacc gatattatcg actggtcgtt
     6001 ggcacatttg aacccgggag gcggtttggt acttaatttt attttgcttg aaaatgcgtt
     6061 aactgcaatg aaccatttgg aaaaattaac agtgagtgaa ttaacgatga aacaaatcca
     6121 agtttcgagt tggcataaac ttggagcagg tcattatttt gaaccacaaa atccaaccgt
     6181 cattattggc tgtaaaaaac tagaggagtg aagaaaatgg cagaagtaca tttcgtcgga
     6241 gcaggaccag gagataaaga gttaattacc ttaaaaggat atcaattatt aaaagaggcg
     6301 gatgtcgtta tttatgcagg gtcgctcgta aacccggagt tgctagaata ttgtaaacca
     6361 gactgcgaaa tccataatag tgcaagcatg aatttaatcg aaatcatcga ctgcatggaa
     6421 gcgggcgtga ctgctggtaa agaagtggtt cgtttgcaaa ccggagactt ttctatttat
     6481 ggttcgattc gtgaacaggt cgaggaaatg aaaaagcgtt cgattccctt cacatgtaca
     6541 ccgggtgtga gttcattcct tggtgcggca agcagttttg gggtcgagta tacagttcca
     6601 gaagtaagtc agagtgtaat tattacccga atggctggca gaactccagt accatcgcgc
     6661 gaatccctcc gttcatacgc ggcgcaccaa acctcaatgg taattttctt gtccgttcaa
     6721 ggtattagaa aagtcgtttc agaattaatc aaaggtggct ataaacccga aaccccagca
     6781 gcagttattt acaaagcgac ttgggcggaa gaaaagaaag taaccggcac gttagaagat
     6841 atcgcagaaa aagtaacaga agcgggaatt acgaaaacgg cgcttattat ggtcggtgat
     6901 ttccttggag aagagtttta ttattctaag ctatacgaca aggatttcaa acatgaatat
     6961 agataaactg gcgattattg ctgtcacaga acgtggtcgc gatttagcaa taacgttaac
     7021 aaaaacggta gcagcaacga tttttgtacc aggaaagcat tgcaatgagc aaacaaattc
     7081 tttaacgccg gattttggaa cagcgatgcg cgaaattttc acaaaatatc aagcattgat
     7141 ttgtattatg gcgactggaa ttgcggttcg aacgcttgct ccagcgatag aagacaagct
     7201 gtctgatcca gcagtacttg tcatggatga acatgggaaa tttattatca gcttgctttc
     7261 aggacatgtt ggcggggcaa atgaactaac cgaacaaatc gctatgataa ctggtggtgc
     7321 ggcagtaatt acaaccgcaa cagaccgcgc aaatgtagct gccattgata atatcgccaa
     7381 acaattaaat ggttatttac cagattttaa agcgacaaca aaacgcatca atggtttact
     7441 tgcagcagga aaagaagttg gattgtacat cgatgagcca ttaaatatag atacacgcgg
     7501 ttttacaatg gaagaagtta gcccgcaagt ttacatttca actaaatata aactacaagt
     7561 ggcgacacat gaacgcatcc agctggtacc taagcaattt atcctcgggg tcggttgcag
     7621 aaaaggcgtt tcagcggaaa cgatagatgc agcatttaca catttttgtg aacaagaaaa
     7681 catacacccg cgggcattcc gtgagattca tagtattact ttaaaagcgg aagaaccggc
     7741 aattcttcat ttagcggaga aatggcgtgt cccatttatt gtccatccag cagaagaatt
     7801 acaaacagtt gctggaaaat atccaacatc cgcttttgtt caaaaaactg ttcaagtagg
     7861 aaatgtcgcc ctatcgtcag cagacattgg tagtaacgga aacgttgtta caagccgatt
     7921 tgctgaaaat ggcgtgactt tcgcagcagg gaaattaact aaaaatagtg aggtggcaaa
     7981 atgatttatg taatcggaat tggcccagga gataaacgat taatgaccgg tgaagcactg
     8041 caagcaatag aagacgcgga ggtgattgtt ggttacgtaa cgtacatcaa actcatcaaa
     8101 gagctaatta aagataaaga agtagtgaaa acaggcatgc gccgcgaaat cgatcgttgc
     8161 caagaagccg ttgatattgc actaacagga aaaaaagtag cagttgtttc aagtggcgat
     8221 gcaggaattt acggtatggc tggtctagtt ttagaactcg cagaaaaaag caacccagat
     8281 ttagaagtca aagtgattcc aggaattacc gcaagtattg gagccgctgc tgttctcggc
     8341 gcgccaatta tgcacgattt ttgccatatt agtttaagcg atttaatgac accatgggaa
     8401 gtaatcgaaa aacgtctaac ccacgctgca atggccgatt ttgttgtctg tttttacaat
     8461 ccgagaagta aaggccgcgc caatcatttg gccaatgctt ttcaaaagat gatggagcat
     8521 aaatcagggg acacagttgt tggtattgtg aaagatgttg gtcgaaaaga agagcgaaaa
     8581 atcattacaa cgatgcgaga tattgattat gagttagtgg atatgacaac gatggtgatt
     8641 gtaggaaaca aagaaaccta cgtgaaaaat ggcaaaatga tcacaccacg aggttacaca
     8701 ctatgatttt cgtgctagga ggaacttcgg atagcttggc gattagcgac tggctaacgg
     8761 aaaaaaagca agcctttata ctctctgtcg caaccgatta cggagaaact ttagcgaaac
     8821 aacatgccga aaacgtattt tgtggcagat tatcaaaaga ggaaatgctc ctaaaatggc
     8881 atgctacaaa agttcacctc gttattgatg cgactcatcc atttgcgacc attgtttctg
     8941 aaacagcgat ggaggcatgc aaagaagcgg acattcctta tattcgtttt gaacgcacta
     9001 gtgaacaaac agataatact tatttggtag cagatattga ggaagcttgt gcagttgcaa
     9061 tgaaacttgg gaaacgaatc tttcttacaa ctggtagtaa aaatttacca gaattcgtag
     9121 ctggtttaaa caatcgacat atcatcgctc gtattttacc agtgtctgat gtaattcgtt
     9181 cagccgaaga actaggtctc gttgccgacc agatcattgg catgaaagga ccgttcacca
     9241 aagaagcgaa ccgaactcaa ctagaaatga ctggggcaga tgtattaatc actaaagaga
     9301 gtggaaaaca aggtggcttt caagaaaaac tcgcagctgc cgcagaatta aatattccag
     9361 ttattgtgat tcgtcgcaaa aaattaaatt atccaatcga aataaatcat ttaagcgaac
     9421 taccagaaat tttaactcaa ttggaggtct actaatggga aaagtcatgt taattggtgc
     9481 aggtcctgga gatgcacagt tgctaaccgt gaaaggctta gctgcactgc aaaaggcaga
     9541 tgttattgta tacgatcgcc tcgttgaacc agcgatgctc caagaacgaa aagctagttg
     9601 taaactcatt tatgtcggaa aagaaccact tcatcatcca attccccaag aggaaatcga
     9661 gcaaattctt gttaaagaag ctgcgacaaa tgagctggtt gttcgtctaa aagcaggaga
     9721 cccttatgtg tttggtcgcg gcggggaaga aggagagaca ctctataaag cgggaattcc
     9781 atttgaagtt attcctggaa tcacatccgc aattggtggg cttgcctacg ctggaatccc
     9841 agtaacacat cgtaattttg cttcgagttt tcacgtgatt accggacatt tgaaaaaagg
     9901 acgcgatcca ctagattggg aagcccttgc tagactggaa ggtacgctcg ttttcctgat
     9961 gggaatgact aatttgccta atatttgtgc gaacttacta gaaaatggtc gaaaagccga
    10021 aacgggtgtt gcgattgtac aatgggcatc tcgcggcaaa caattaacgg ttaccgggaa
    10081 cttacaaaac atcgaacaaa aagtagcgga atctggtatt tcttcgccgg cacttattgt
    10141 tgttggtgat gtggtgagct tacgaccgca gcttaacttc tttgaggaaa tgccactttt
    10201 ccatacaaaa gtattacttc caagagcacg agctggaaaa agtatgctcg cggaacaaat
    10261 tcgcgattta ggcggagaag taacaatgta tcccaatatt caagtagtag atgttgtgcc
    10321 aacgaaaaca aaagaagaac taagcgaagt aagcgaactt cttttcacat ccaaagaagc
    10381 ggtagaacga ttttttgatt atttagccca gcttgattta gatattcgtt ctctaaaaaa
    10441 tacccatctt accgctattg gcaaacaaac aaaagaagct tttagtgaaa aaggaattat
    10501 tccagatagt ttcattaaaa ggcggagcac ggaattaatt ttggagcatt taccacggtt
    10561 acagaaaaat gtgagcaact taattatcgg aagcatagtt gatacggcag aagttaacgc
    10621 aattttagca gaagtggaag cgatggaaat gatgccgtta tatgatatgc gtcctgtgac
    10681 agaacgacca tttgaccttg caagctttga acaagtttgt ttctcaagtt cgcgttccgt
    10741 tcaaaattta ctcgacgtac taacaaccga agaaaaagcc attttacaaa cgaaaacaat
    10801 tctttccatt ggaaggttca cgagcgcaac gttagcatca ttcggtatca acaatttcat
    10861 cgaagccgaa agcgccacac cagagagctt aattgaacta atccaaaaaa caaaattaga
    10921 aggagtacca caatgaaaaa agcgatttta gtcgttagtt ttggcacaag ttatcctgaa
    10981 acaagagaaa aaacgattga agcctgtgaa aaaaaagtgg cccaagagtt cccagattac
    11041 aacgtgtttc gtgcattcac atccaataaa atcatcaaaa aactaaaaac tcgtgacaat
    11101 atgcatatta acacaccaag ccaagcatta aaccaactaa aggaattagg ctacaaagaa
    11161 gtcattattc agtcgctaca tattattagt ggtggtgaat ttgaaaaaat cactgcacag
    11221 gtggaaaaat tcaagccgga tttcgattcc attattgtca gccaaccgtt acttgattcg
    11281 atggaagatt acgaaaaagc aatcgaagcc attcgccacc aaatgccacc tttaaaagaa
    11341 caagaagcgc taattctcat gggacatggt tcgaagcatc gtgctttcag cgcctatgca
    11401 tgccttgacc atatgttgtt aaacgaacca atttaccttt gtgcggtaga aagttaccct
    11461 ggtcttgacc aagtaattga acgattacaa caagtaaata taaaaaaagc gcacctaatg
    11521 ccgtttatgc ttgtagcagg tgatcacgct acgaacgata tggcttctga tgacgaggat
    11581 tcttggaaaa gcacgctgga acaagctggc attcaaactg aatgtcattt gcaaggtcta
    11641 ggcgaaaatc cgcttattca agcccaattt atcgatcata tccacacggc aatagaaagg
    11701 gtgaaagcac gtggctaaat tttacggcat tggtacaggt cctggagata gcaagttagt
    11761 cacgatggaa gcagcagaaa gactcggaaa tttagaaatt ctctacacgc cacaacccaa
    11821 aaaaggcggc gaaagtttag ctaagaaaat cgtcagccct tatttaaaag atacattaat
    11881 cattaaagaa cgccattttc caatgagtta caacaaagaa gaaaaaatgc ttgcatggaa
    11941 agaaatcgcc gaagaaatca aagcagatgt tcaaaacggg catgatgttg gtttcatcac
    12001 acttggcgat ccaatggttt acagcactta tagctattta ctcgaattat taaaaggaga
    12061 gattgaaaca gtgacactcg caggtatttc gtccttttcc aatatcgcct ccaagattga
    12121 attaccactc gtaatggacg aggaaagttt cgctgtcatc cctgtaacag caggtgctga
    12181 aaaaatcgaa caagcgctca ctttatttga cacagttgtc ttaatgaaag cagcaagcaa
    12241 tttacccctt cttacgacat tactaaaaaa actgaattta cttgatgcag cagtagtagt
    12301 aagcgatgtt gccatggcga ctgaaaaaat cacatacggc atgaacgaga taaacccaga
    12361 cgaaaaaatg tcatacttta ccacgattat cgtgaaaaaa agaagggagc aatataaatg
    12421 aaaaaattat ggaagtttct accatttgtt ttaataggtg ttatttattt tactttaacg
    12481 aacccagaat ccgcacacgc aatgcatatt atggagggct ttttacctgt taaatgggct
    12541 gtcttttggt tcattgtatt tatcccattc cttgtacttg gtttaattcg tattcgtaaa
    12601 ttaattgccc tagataaaaa caacaaatta ctgttggcac tatgcgcagc ctttatcttt
    12661 gttctttcag cgcttaaaat tccgtccgtt acaggatctt gttctcatcc gactggtgtt
    12721 ggccttgcaa ctgttatgtt cggaccgctc gttgtcagtg tacttggtgt gattgtctta
    12781 cttttccaag cgttactact tgcacacggc ggtattacaa ctcttggcgc aaacgcaatg
    12841 tcgatggcgg ttatcggtcc aatggttggt tttgtcgtat acaaactcgc tcgtaaatta
    12901 aactgtaata aaagtgtttc gattttctta tgtgcgatga cagctgactt agcaacctac
    12961 ttaactacca gcgtccagct cggagtcgtt ttcccagatc cagcatccgg catgatggca
    13021 tccattctga agttcatggc gattttctgt gtgacacaag ttccaattgc gattgcagaa
    13081 ggattgctaa cggtagtcat gtacaatctt attagcaaaa atttaccaga aaaggtggca
    13141 caattacgat gaaaaaaata aatatcaatg tcattttaat tctattagta gtattgttaa
    13201 tggttagtcc attcttcttc aataaaacgg gagaatacgg cggctcggac ggggaagcag
    13261 aggcggaaat caccaaaatc gatccaagct atgaaccgtg gtttgaacct ctttatgaac
    13321 caaaaagtgg tgaaattgaa agcttattat ttacgcttca aggttgtatc ggaacaggaa
    13381 ttatcgcgta tgtcattggt gtaagtcgtg gcaagcggaa agctgagaac gatgttaacc
    13441 attgataaat atgcttatca aaaccggtgg atagcttttt cgccatcatt aaaagcatta
    13501 ttttatgtcg cgattctaat actcgcgtta actggtcctg tgctcatcca agcaatactg
    13561 ttcttctgca tggtaccatt gacgctctat gtcgttaaaa ttcactttaa acaatatttg
    13621 aaatggctcc ttttaccatt ttcatttcta ctttttagtt tactttcgat tctcatttcg
    13681 atttctaaag atccaagcag ttttctcgct tcgatttcga ttgggagttt gtatctcggt
    13741 gtatcagacg tgactattac gacggcaaca caagtctttt tccggagtat cgcttgctta
    13801 gccgcaacct actttttcgt cttgaccgtt cccgtggtac aattaacaaa agtgatgaag
    13861 cgaattttta ttccaaaagt actgattgaa ctgaccattt taatttaccg ttttatcttt
    13921 attttcttag aggaagcggc ggcaattcga aaagcgcaga gcctgcgttt tggttatcac
    13981 ggcataaaaa atagttatcg ttcatttggc atgctcgtaa atactttatt taatcgtgtt
    14041 atgaaaagat ataatgaaat ggttataaca cttgatgtga agctatatca aggagaattt
    14101 catatctagg aggaagccaa tttgcttaaa acagaacata tttcattcca atacgaagat
    14161 ggcaaacaag ccttaacgga tgtttcaatt gatttagaaa aaggcaatat tatcggactt
    14221 attggtgcga atggctccgg taaatcgacg ctttttatgc agttacttgg aattaacaaa
    14281 ccgagcgatg gcaccgttta ttttgaagga aaaccactcg cgtatacgaa aaaagcatta
    14341 tttgctttac gaaaaaaagt aagcatcgtt ttccaagatc ccgaccaaca aattttttat
    14401 tcgaatgttc gtgatgatgt agcctttgca cttagaaacc taggtgttag cgaaacggaa
    14461 gtagaggcac gagtgacgaa agtattagac attgttgggg caaaggactt tcagcataaa
    14521 ccagtccagt atttaagcta cggtcaaaaa aaacgtgtcg caattgcggg tgcccttgtt
    14581 cttgatacag attggttact tttagatgaa ccaactgctg gtcttgatcc gattggcaaa
    14641 aaaatcatga tggaaatcat cgaacgtctt gcaagccaag gaaagaaaat acttatttcc
    14701 agtcatgata tcgatttaat ttatgaaatt tgtgattata tctatatgct gaaggacgga
    14761 agcgttttga cagacgggga aacgagcaac gttttcttag agaaaagtaa tgtcgaacaa
    14821 gcgggattag tacagccttg gctcatcaaa ttgcatcagc aagctggcta cccactgttc
    14881 aaaaaagaag ccgatttttt cgcgcatacg gggaaggtga ctaattaatg gtaaagcaaa
    14941 taatgattca aggtaccgct tctgatgccg ggaaaagtgt actggtggcc ggattatgcc
    15001 gtttgttcaa aaataaagga aagcgagttg ttccatttaa atctcaaaat atgtcactca
    15061 attctttcat aacggcgaca ggagatgaaa tgggacgcgc acaagttttt caagcagaag
    15121 cagctggtgt ttttccagat gtccggatga atcccgtgtt acttaaaccg accaatgaca
    15181 ggcagtcgca agtgattttt atgggtgcaa ttttagataa tatggatgct gtgacgtacc
    15241 acgatttcaa acaaaccctt atcccgaaaa tccaggcagt ttaccagagt ttagcagatg
    15301 aaaatgatat tattgtacta gaaggtgctg gaagcccagc cgaaatcaac ttaaacgacc
    15361 gagatatcgt gaatatgggc atggcaaaaa tggtcgatgc cccagttgtc ttagttgctg
    15421 atattgacaa aggtggcgtt tttgcttcga tatacggcac cattatgctg ttaaatgaag
    15481 aagagcgggc tcgaatcaaa ggtgttatta tcaataaatt ccgtggcgat gtagctcttt
    15541 tacaacccgg aattgatatg attgaggaac tcacaaacgt cccggttatc ggtgtgattc
    15601 cttatgccaa tctacaactg gaagaagagg acagcgtttc tctaagtggg aaaaattacg
    15661 tgccggatag taacgcacta cttgatatcg cgattatttg tttaccgcgg atttctaatt
    15721 tcacagattt tcatagtttg gaaattcaac cggaaataag tttgcgctac atacgaaatc
    15781 tagctgattt tggaaaacct gatttagtca tcattccagg cagtaaaaat acgctagaag
    15841 acatggcatt tctcgaagaa tcaggactga aaaaagctat tcaaaatttt gcggaaaatg
    15901 ccggaaaagt aatcgggatt tgtggtggct accaaatgct cggtaaaaaa atgctcgatc
    15961 cgaatcaagt ggagagtaaa caattagaaa tagccggact tggtttgcta gataccgaga
    16021 ccatttttct cgaccaaaaa cgcactactc aaattacagg tgtgacgcat tcaggtgaag
    16081 ctgttgaagg ttacgaaatc catatgggtg agacgaagcg aggcgagagc actagtccat
    16141 tttgcgaaat taaagcggtg aacggaaacg aagaaaccca ccaagatggc gctatctctg
    16201 tcaacaaaaa tatcatcggc acatatattc atggtatttt cgacaatgat gttttcttag
    16261 gaaatctatt tgacgaacta ctaacacgta aaaacaaatc cgtttatccg catgaaatca
    16321 ttaatctgaa agaacacaaa gaacaagaat acgacaaact agcggccctt ttagaagcaa
    16381 atattcaaat ggaccaacta gaaaaaatca tgaaaggaga aaaaatatgc gtatctacac
    16441 aaaaaccggc gataaaggaa tgacaagaat tatcgggggt agcaaagtaa gtaaagataa
    16501 tatccgtatc gatgcatatg gaactttgga tgaacttaat tcgctgattg gctacacgat
    16561 aacaacactt ggggctgaac cagaaattca agccgaactc gaacaaattc aacagcaatt
    16621 atttgatgca ggaggggatc ttgcaaccga agaaggcaag cgtgcgtata aattaacaag
    16681 tgagcctgtt gcgtggctag aagaccgaat tgacatctac gccgatgaac ccccagaaat
    16741 agaaaaattt atcctaccag gtggaacgca agcagcctca ttactgcaca tggctagaac
    16801 cgtaacaaga agagctgaac gcgaaatcgt cggtatgtta aaaattgctt caagtaacga
    16861 agaagtatta aaatacgtca accgtttatc ggattacttt tttgccgttg ccagagtcgt
    16921 caattaccgc gctggtgaaa aagacatttt ttacaaaaat tccgaactcg ttttccgcaa
    16981 taaaaagaaa taataaaaaa cctctccaga catcaaagcc ggagaggttt tcctttttta
    17041 aaaacgttga attaaaaata caccaacaag cattaataaa acaccaatca tacgataacg
    17101 gttaattgga tgaggaataa ccccgaaaaa accaaaatga tcaataataa gtgcaataat
    17161 catttgccca caaagcgcta aaacaaccgt cattgctgag ccgagtaatg gtaaaagtaa
    17221 aatgttagaa gttacgaaga gcactccaag cgcaccgcca gtgaaaaccc accaaggaat
    17281 tcggccgaca cctttcagtt gaaaagtcaa acgacgctcg acaattagac aaacaagcgt
    17341 aagtaacgtt gtcccaacta aaaaggaaat aaatgatgcc acaaaaggag aaccgacagt
    17401 gagccgaagt tggctattaa tcgacgtttg aatcggggaa agtagtccag aaacaagtcc
    17461 cattgccata aatagtaata atgatttgga tgatattttt gtcatgtttt ctcctccttt
    17521 taaaagcgtt gcatcaagta aatgccgccg aacattaaga taacgccaag tagacgttcg
    17581 atattaatct catgcattgg tacttgaaat aaaccaaagt tatcaataat aatcgccata
    17641 atcatttgtc cacaaaccgt aatcatcaca agaagtgccg aaccaagtcg aggtaaaagt
    17701 aaaatattgg ccgttaagaa aataacgcct aatgttccac caccaaccca tatataccaa
    17761 ggatttgagg caatcatttc tgaagatatt ggccatgatt tttgtgtaaa taaacaaacg
    17821 ataagtaaaa cagttgtccc taccataaaa gaaacccacg aagctaaaaa cggtgatttc
    17881 gtatatgtac taagtcgcgt attgatg
//
LOCUS       DABQVC010000040        17510 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.040,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000040 DABQVC010000000
VERSION     DABQVC010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17510
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.040"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            59..131
                     /locus_tag="IBJ56_000959"
     tRNA            59..131
                     /locus_tag="IBJ56_000959"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:92..94,aa:Asp,seq:gtc)
     gene            259..639
                     /locus_tag="IBJ56_000960"
     CDS             259..639
                     /locus_tag="IBJ56_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HAM3417221.1"
                     /translation="MDLVKNGKVLELVHPNGNWTLIKEEGFSPVQITVAAVAACSGYV
                     YQTLLEKKRIEINDLSIHTDYEQDQESAVHVLTKINVTFTVDLVDKSNEAKAEKAVHL
                     VKDACPVAKSLDPSIEINEMVVFK"
     gene            754..1428
                     /locus_tag="IBJ56_000961"
     CDS             754..1428
                     /locus_tag="IBJ56_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HAM3417222.1"
                     /translation="MAEKTIVEKLQLTKYKEAVILNQPNGADYFQNLANYEEKLADKQ
                     YDLIFDFVETLEELITFVQKVIAENKLAANGYLFFAYPKKGNKKFATYVHRDELMPAL
                     KTDEEGYVDGSTLKFTRMVALDETYTVVGLKEAAKLKAKGVKKNNPSADEYADHVPLV
                     AEFLADKGDLQAFYNNLATGYQRVWARYIYSAKQPATQEKRRLEMVDILSQGYKTKDL
                     YRQGKK"
     gene            1559..2056
                     /locus_tag="IBJ56_000962"
     CDS             1559..2056
                     /locus_tag="IBJ56_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417223.1"
                     /translation="MANYINKERRQIDFDPFDLRIIAVPEVVAVQFKPRSEHTLLIRI
                     ADVGATYQPLKNESLFEAILPVHFNDINEEDDYWGLSDKEQAEMKLFNEVHRDLIYNF
                     VDEHPDFTQIVVHCHAGVSRSSAVAMAIAEHLGDTDTYEKLQVIKRYLPNPRVLAIMR
                     GEAYL"
     gene            2092..3441
                     /gene="gorA"
                     /locus_tag="IBJ56_000963"
     CDS             2092..3441
                     /gene="gorA"
                     /locus_tag="IBJ56_000963"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HAM3417224.1"
                     /translation="MEKHYDYIAIGGGSGGIASINRAAMHGAKCALIEPKFLGGTCVN
                     VGCVPKKVMWYGAQIKEAMDLYADAYGYQVDASFNFQKLVENREAYIERIRGSYKNGL
                     DNNKVEWIKGYAEFVDEKTLRVNGELVTADHILIATGGEPALPSIPGAEFGITSDGFF
                     ALKELPKKVAVVGAGYIAVELAGVLQQLGSETHLFVRKHAPLRNFDPLLTDTLTEIIE
                     QSDMMLHKHAVPQKVEKNPDGSLTLSLEDGRTETVDTLIWAIGRKPVIQGLQIEKAGV
                     KLLESGHIAVDKFQNTNVAGIYAVGDVTGHYELTPVAIAAGRRLSERLFNNKKDAHLN
                     YENIPTVVFSHPAIGTVGLTEPEAIEKYGKENIKVYTSSFTSMYTAITDHREPCRMKL
                     ICEGKTERVIGLHGIGYGVDEMIQGFAVAINMGATKADFDNTVAIHPTGSEEFVTMK"
     gene            3470..4144
                     /locus_tag="IBJ56_000964"
     CDS             3470..4144
                     /locus_tag="IBJ56_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HAM3417225.1"
                     /translation="MGKKLSLYFVRHGQTYLNKNLRMQGWADTPLTPEGIEIVKESGR
                     GLAETEFVAAYSSDLHRTIATAGHLLKENKHAFGLTLEPLSEFRETFFGSYEGEKGDV
                     AWNEIAHHMGYANQEDLFKNADVRETMNGTKAADPTGDAEDFMTFWTRVEQGFLHVIN
                     RHRETGGNVLIVAHGNTIRNIVHELEPSMDEAVILDNASVTVLAYENGLFKLERLNDT
                     SHFKKA"
     gene            complement(4187..5323)
                     /locus_tag="IBJ56_000965"
     CDS             complement(4187..5323)
                     /locus_tag="IBJ56_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAM3417226.1"
                     /translation="MKFSRFRDSKLFFWTIEILAVVAILFVLLQMKYIFSPIGIIVST
                     LFMPILVAGFLFYLFNPLVLFLEKRKVPRLLSVILIFIAFITLVVLAVMQLGPTLADQ
                     VAELAKAIPGYWQDFEKWLQDLSNNSALKDLDIKQELEKLNISLPKIMSVVVDGVASS
                     FGAIVSFVSSFVMILVTVPFIVFYMFKDGHKFVESSGRFFPAGIRSEAKQIIKEMNKT
                     ISTYISSQAIDCMFVGLFTFIGYLIIGQPYALLFGFIAGATNIIPYLGPFIGAAPAVI
                     VALFTSPVQALLVIVVVTIVQQIDSNLLSPYIMGKSLSIHPLTIIIILIVAGNLAGIF
                     GMILGVPLYAVVKTIIVNVNRLIKLRRGQLAIDNNLPDPDTPKE"
     gene            5464..5856
                     /locus_tag="IBJ56_000966"
     CDS             5464..5856
                     /locus_tag="IBJ56_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3417227.1"
                     /translation="MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGA
                     DIGINFHTVNKAYQILKQEGFIQIHRQKGVVIHPDGVAKADELFFAKLQTKLKPLIAE
                     SVVRGVTEEKWLEVSKAIFDEMHGRRVE"
     gene            5859..6962
                     /locus_tag="IBJ56_000967"
     CDS             5859..6962
                     /locus_tag="IBJ56_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HAM3417228.1"
                     /translation="MEIIIYIFVSIAIISLQAITPFVIRKSECFGVNVGERANRNAEL
                     TRLKKQYVGQVVLWTSFVAIIGIALIQGFHSSENTQAGIFIASMFSQLIVSFIIYYRF
                     HHTTLQWKRDKIEAGEISTNSIIMVDTSFHRRKMVISYTWFVVPLLIFIITLAITVVF
                     YPVAPADFPIHFDMSGAVTDTVAKSPRVVLLLPMMQLGMIALFIFINFVIARSKQSVE
                     NENPTDSLKRGLLFRQVSSKAMLIMCTIMVIDFLIMQVVTLLALPAEWMMITMIISVV
                     LILFGTVLLAVKVGQGGSRLKFADQPDGVNKPIRDDDSFWKAGVIYFNRNDPALFVEK
                     RFGIGWTINTARPVAWLSFIIIIAVIILISILF"
     gene            7045..7548
                     /locus_tag="IBJ56_000968"
     CDS             7045..7548
                     /locus_tag="IBJ56_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAM3417229.1"
                     /translation="MAIRLKRLEEWEGFTGIALVREGLKTEALHTEIKTAFKEMLQLA
                     RELDDFSKQKTFYGISVHNIEDGITHYSVIPVEQKYPHLQEPLEWIEVPAHTYFVAEH
                     IQDTDISESFEEIARAIQEKNYKPYITANNPVFDPLPFKLEVYTKQGSDGANIEIRIP
                     VVKELHT"
     gene            7662..8474
                     /locus_tag="IBJ56_000969"
     CDS             7662..8474
                     /locus_tag="IBJ56_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HAM3417230.1"
                     /translation="MGYYSPQEVTEITIEKGTQKANSSTLTLVLLGFLGGAFISLGYL
                     LYIRAVGTMPHEWGSFATLIGASLFPVGLVCILLGGGELITGNMMAVAIAWYDKKISF
                     QQLLRNWAIVSVMNLVGAFFVAYFFGHFVGLTEGDFLPKTLATAGAKINDPFWVAFVS
                     GIGCNWFVGIAVWLCYAAKDFAGKILGIWFPVMAFVAIGFQHVVANMFIIPAAIFAGY
                     YSWADFIWNIIPVYLGNVVGGAVFVSLFYFLAYKKNAPKKVKEEIHQPIEES"
     gene            8699..10165
                     /locus_tag="IBJ56_000970"
     CDS             8699..10165
                     /locus_tag="IBJ56_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HAM3417231.1"
                     /translation="MSIKETALPKVQTKLFINGKWTDGDNKETKDIVNPANGEVIAKI
                     AQAGPNETKKAIKAAKEAFPDWAKMELADRVKLLHKIADLMEEKADTLAKIMTLEQGK
                     PLKESKGEVLTGAENFRFAAEEARRLYGETIPAPNNHAFIVKKQPIGVVAAITPWNFP
                     GGMVTRKLAPALATGNTIVLKPSGDTPLSALAIFEIFEEAGLPKGVANIVMGSSKEIG
                     ETLTDSDDVRKLTFTGSTKVGQTLFKQSAETLKKISLELGGHAPFIVFDDANLDAAVN
                     DLVAAKFRNNGQVCVSPNRIFVAKEIKEKFTKALVAKVEQLKVGNGLDDVNVGPLIRE
                     DAIDKIDKQLKNATDKGAKVLTGDGRLTGSDYDKGNFYKPTVLDNVTREMDIFYEETF
                     GPVIPLITFETEDEAIEMANDSEFGLASYFYTKDLARVEKVGAALEYGMVGANEIAIS
                     NPETPFGGVKHSGFGRENGHYGMEEYIQVKFINLKYRD"
     gene            10309..10614
                     /locus_tag="IBJ56_000971"
     CDS             10309..10614
                     /locus_tag="IBJ56_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417232.1"
                     /translation="MKNILLICGSGASSGFMAAAIRKAAKKRGEQVTVKAASESQIDE
                     RINEIDYLLIGPHLAYMLDDLKQKVADKNVLVSIIPQATYGTLNGEKALDLILTMEG"
     gene            10619..11887
                     /locus_tag="IBJ56_000972"
     CDS             10619..11887
                     /locus_tag="IBJ56_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3417233.1"
                     /translation="MNNKVMDFMTNKFAPKVNKVVKNPWVSAIQDAIMSALPLVFVGS
                     LVTIVSLLKNLFPGMPDFSMISNFSFGMFGLVVAFLIPYYLMEKKGNSSQKLISGATG
                     LVLFLMLLFPTISADGDAVFILSRFGATGMFLSITTGLFVGCVMNFAAKRSFFSEDTP
                     IPDFVVGWFNSLLPITFILIVGWLITVQFNIDFFEVIVAVFSPLASIVQSYPGFVLSV
                     FIPAFLYTFGISGWVMMPAIYPVYMAGLAENSQAVANGASASNIATQETVYALISIGG
                     VGTTLSLSIMMLILSKSLQLKAIGKAVIVPSIFNINEPLFFGAPIAFNPYLMIPTWIN
                     AFLVPSIAYFVMSMNLVSIPAQSFLLWYMPYPVTSYLATQDFRGVIACLAIIVITWLV
                     YLPFFKAYDNSLLKQEKLDAIETEKEMVTN"
     gene            11902..12252
                     /locus_tag="IBJ56_000973"
     CDS             11902..12252
                     /locus_tag="IBJ56_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HAM3417234.1"
                     /translation="MSEQDYVEETDSLNELSMNILIHAGNARNDLVKGLNHLEELAFN
                     EAEEFIASAKKEIVIAHSLQTDTLQLEASGNQIRYSTLFCHAQDTLMTAKSEILIGEH
                     MLRLFKKMTELTKK"
     gene            12264..13715
                     /locus_tag="IBJ56_000974"
     CDS             12264..13715
                     /locus_tag="IBJ56_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HAM3417235.1"
                     /translation="MFENYQFPKDFLWGGAIAANQAEGAFKVDGKGISLADLHKYHKG
                     KTNDEISEEQHKGVSLADIKASMEDKVNYYPKRHGIDFYHTYPEDLALLAEMGFKTFR
                     TSLDWTRIFPTGEETEPNEAGLKYYDQLIDKIIELGMEPIITILHYETPVEIVLNNGG
                     WHNRKVIDLFEKYGKTVLDRYNKKVKYWIVINQINLIQFEPFNSTAIPYDAVDDYLSA
                     TYQAVHNQFVASAKIYEYGKALNPDLMIGTMLADCTAYPFSCDPDDIVLAMKRNRMEY
                     FFADVQFQGEYPQYALNYFDENNIHIEITEDDKAVLQKNTMDYLALSYYYSQMVDSKK
                     NDLDPASITPNPHLKANPWGWAVDPKGLYNALSQYWDRYHKPIIIAENGFGMYDKLEN
                     GEIHDDYRIDYLSAHLKEMKRAMYDGVEIIAYCAWGPIDIVSCSSAQMEKRYGFIYVD
                     LDNEGNGTGKRIKKDSFSWYKKVIESNGEDLEA"
     gene            13788..15686
                     /locus_tag="IBJ56_000975"
     CDS             13788..15686
                     /locus_tag="IBJ56_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3417236.1"
                     /translation="MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINE
                     ATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKLLLELIKNSTKGVDLFELADILY
                     ISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI
                     KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIE
                     TQKTLIRKHSKEYEISKKIAKILSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGE
                     LDQFVDKKIIKALKSVLANVEETYLIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLS
                     LLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEI
                     GLLIEDYHDLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSI
                     FIHPLLTTKDIKKISNRIQTKKKILENHLRGQQIDRYIVRSLYANQIDPSELTPAKIR
                     EQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVSIMTLQE
                     PIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKL
                     KMMMEESE"
     gene            15978..>17510
                     /gene="abc-f"
                     /locus_tag="IBJ56_000976"
     CDS             15978..>17510
                     /gene="abc-f"
                     /locus_tag="IBJ56_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein"
                     /protein_id="HAM3417237.1"
                     /translation="MSTIEINQLKIEVADRVLVEIPHLLVSKKARIGIIGQNGLGKTT
                     LMEVIAGAKEAISGTVTTQGKLAYIKQLSTDTSTKSGGEKTRKAIQHAMRQNPSVLLA
                     DEPTSNLDVESVKHLERQWSDFHGALIIISHDRTFLDALCTEIWEIKNQKIHVYKGNY
                     HAYLEQKQQQENQAELVYKEFKNKKQQLQASQTHHEIEAGRIVKPGKRLNNKEASAFK
                     AGKGTQQKKQHSTIKALEKRIERLGNVEKPHTTKPIKMITPDNRVIKKGNTILSVKET
                     TYEIAGRKLFETKAFSIKAGDKVALIGENASGKTTFLKEIIQENPNLLCNPQAKIAYF
                     DQELNGLNQTKSLLENISEISVQTKQVNREVLGSMHFKESDLHKEVRMLSGGERVKLL
                     LSMLLVSDANFLILDEPTNYLDIYAMEALETLIKQFAGTVLFVSHDRTFVNHVAEQLL
                     VIENNEMTFHRMTFAEYEESKAPSRITEEDKLILEMRMSEIAAKLMQPNLKPTEKAML
                     EQD"
BASE COUNT         5977 a         3212 c         3539 g         4782 t
ORIGIN      
        1 cggtaacacg ggttcgaatc ccgtacgggt cactttttta ttcatttttt atacatatgg
       61 ttccgtggtg taggggttaa catgcctgcc tgtcacgcag gagatcgcgg gttcaaatcc
      121 cgtcgggacc gctcaaaaag aatccaagca aaacttggat tctttttttc gtacaggaaa
      181 ttggacagaa ctttttattt gagctataat cttattattc atataagaat tgtaaggatt
      241 aaattggagg aatgaatcat ggatttagtg aaaaatggga aagtgttaga acttgtacat
      301 ccaaatggca actggacatt aattaaagaa gaaggttttt ctccagttca aataacagtg
      361 gcggcggttg ctgcttgtag cggatatgtc tatcaaacat tacttgagaa aaaacgaatt
      421 gagataaatg atttaagcat tcataccgat tatgagcaag atcaagaaag tgctgtgcat
      481 gttttaacga aaattaatgt tacttttacg gtggatttag tggataaaag taatgaagcg
      541 aaagccgaaa aagccgtgca tttagtgaaa gatgcttgcc cggttgcgaa aagtttagac
      601 ccatcgattg aaattaatga gatggttgtt tttaaataaa atgatttata gaccaagccg
      661 tggtgcttgg tcttttttct gtttagtttg gcttgataac ttaaagggaa ggctatatac
      721 tgaaaccaaa caatacaaac gaggtgctgg aatatggcag agaaaacaat agtagaaaaa
      781 ttacaactga ctaaatataa agaagcagtt atcctaaatc aaccaaatgg agcggattat
      841 ttccaaaatc tagcaaatta cgaagaaaaa ctagcagaca aacaatacga tttaattttc
      901 gattttgtgg aaacgctaga agaattaatt acgttcgtgc aaaaagttat tgctgaaaat
      961 aaacttgctg cgaatggtta tttgtttttc gcctacccta aaaaaggcaa taaaaagttc
     1021 gctacatatg tacaccgcga tgaactcatg ccagcgctta aaaccgatga agaaggttac
     1081 gtcgacggta gcacactcaa attcacgcga atggtcgcgc tcgatgaaac gtacacggtt
     1141 gttggcctaa aagaagcggc aaaactaaaa gcgaagggcg ttaagaaaaa taacccttcc
     1201 gcagatgaat acgccgacca tgtacctctt gtcgccgaat ttctagcaga caaaggcgat
     1261 ttacaagcct tctacaacaa tttagcaaca ggataccagc gggtttgggc gcgctatatt
     1321 tactctgcca aacaaccagc gacacaagaa aaaagacgtt tagagatggt tgatattttg
     1381 agccaaggtt ataaaacgaa agatctttac cgacaaggga aaaagtaacc aaataatttt
     1441 atttggttat ttttgcgttt gaaactgctt ctttatgtaa aaatgtctag gcgtgataga
     1501 atagaagagg aataagacga aggaaaatct tgttgcactg gaaaagggga catgcaggat
     1561 ggcgaattat attaacaaag aaaggcgcca aattgatttt gatccatttg atttacggat
     1621 aattgccgta ccagaagtag tagcggtgca gtttaagccg cgctcagagc atactttact
     1681 tattcgtatt gcggatgtcg gcgcaaccta tcagccactc aaaaacgaat cactttttga
     1741 agctattttg cccgttcact ttaatgatat taacgaagaa gatgattact gggggcttag
     1801 tgacaaagag caagcggaga tgaaactatt taacgaggta catcgcgatt tgatttataa
     1861 ttttgtggat gagcacccag attttacgca gattgttgtc cattgtcacg ctggggtcag
     1921 ccgaagtagc gctgttgcta tggcgattgc ggaacattta ggagacacgg acacgtacga
     1981 aaaacttcaa gtgataaaac gatacttacc aaatccgcgg gttcttgcga ttatgcgggg
     2041 cgaagcgtat ttataaaaac gaaaacgaag aaatgttagg agagattttg tatggaaaag
     2101 cattatgatt atattgcgat tggcggcgga agtggcggaa ttgcttcgat taatcgcgca
     2161 gccatgcacg gagcaaaatg tgcattaatt gaaccaaaat ttttaggtgg aacttgtgta
     2221 aatgttggtt gtgttccgaa aaaagtcatg tggtatggcg cacaaattaa agaagcgatg
     2281 gatttatacg cagatgcgta tggttaccaa gtggacgcga gcttcaactt ccaaaaacta
     2341 gtcgaaaatc gagaagcgta cattgaacga attcgaggtt cttacaaaaa tgggctggat
     2401 aataataaag tagaatggat taaaggttat gccgaatttg tcgatgaaaa aacattgcgc
     2461 gtaaacggcg aactagtgac agcagatcat attttaattg caacaggcgg cgaaccagcg
     2521 cttccttcca ttccgggcgc agaatttggc atcacctcag atggcttttt tgcattaaaa
     2581 gaactaccta aaaaagtggc ggttgttggc gcgggataca ttgcggttga actagctggt
     2641 gtactacaac aacttggctc agaaacgcat ttatttgtac ggaaacatgc accactccga
     2701 aattttgatc cacttttaac agatacacta accgaaatta ttgagcaatc ggatatgatg
     2761 ttgcataaac acgctgttcc tcaaaaagtt gaaaaaaatc cagatggcag tttgacgttg
     2821 agcttagagg atggccgcac agaaaccgtt gatacgctta tttgggcgat cggacgtaaa
     2881 ccagtcatcc aaggtcttca aatcgaaaaa gcgggcgtaa aacttctaga aagcggacat
     2941 atcgccgtag ataaattcca aaacaccaat gtagcgggga tttatgcagt tggcgatgta
     3001 acgggtcatt atgaattaac tccagtcgca attgcagcag ggcgccgttt atcagaacgc
     3061 cttttcaata acaaaaaaga tgcacattta aactatgaaa atatcccaac cgttgtattt
     3121 agccatccag ctatcggaac ggttggttta acagaaccag aagcaatcga aaaatacggc
     3181 aaagaaaata tcaaagtgta cacttctagc tttacctcaa tgtatacagc catcacagac
     3241 caccgcgaac cttgccgaat gaaattaatt tgcgaaggga agacagagcg cgtcattggc
     3301 ttgcacggga ttggttacgg tgtggacgag atgattcaag gattcgctgt tgcgattaat
     3361 atgggcgcaa caaaagccga tttcgacaat acggttgcga ttcacccaac aggatccgaa
     3421 gaatttgtta caatgaaata gaaaacaacg atggaggagg aagtacgtaa tgggaaaaaa
     3481 attatcactt tattttgtaa gacatggtca aacctactta aataaaaact tgcgcatgca
     3541 aggatgggct gatacgccac taacaccaga aggaattgaa atagtcaaag aaagtggtcg
     3601 cggacttgcg gaaacagaat tcgttgcagc gtattcaagc gacttacacc gtacgattgc
     3661 aacagcaggg catttattaa aagaaaataa acacgcattt ggtttaacac tagaaccatt
     3721 aagtgaattt cgggaaactt tctttggctc ctacgaaggt gaaaaaggcg atgttgcctg
     3781 gaacgaaatt gcgcatcata tgggttatgc gaatcaagaa gacctattta aaaatgccga
     3841 tgtacgagaa acaatgaatg gtacaaaagc agctgaccca acaggagatg cggaagattt
     3901 catgacattc tggacacgtg tagaacaagg tttcttgcat gttatcaatc gtcatcgcga
     3961 aactggtggt aacgttctta tcgtcgctca cggaaatact attcgtaaca tcgtccacga
     4021 actcgaacca tccatggacg aagcggttat tttagataac gcgagtgtca ccgtactagc
     4081 ttacgaaaac ggcttattca aattagaacg tttaaatgac acttcccatt ttaaaaaagc
     4141 atagaaaaaa cgagctttag gaactagttt cccaaagctc gtttttttat tcttttggtg
     4201 tatccggatc aggaagatta ttatcaatcg ccagctgacc tcgccgcaat ttaattaaac
     4261 gattaacatt cacgataatt gttttcacaa ccgcataaag tggaacacct aatatcattc
     4321 caaagattcc tgctaagttt ccagcaacaa tcaagataat gataatagtt agtgggtgaa
     4381 tcgatagtga tttacccata atatatggag aaagtaagtt agagtcaatt tgttgcacaa
     4441 tcgttacgac aacaataacg agcagtgctt ggactggaga agtaaatagc gccacgataa
     4501 ctgcgggagc tgctccaatg aatggtccaa gataaggaat aatattcgtt gcacctgcaa
     4561 taaaaccaaa cagaagcgca tacggttgac caataattaa ataaccaatg aaagtaaata
     4621 aaccaacaaa catacaatca atcgcttgtg aactaatata agtagaaatg gttttattca
     4681 tttctttaat aatttgtttt gcttcagaac gaatacctgc cgggaaaaat cttccagagg
     4741 actcaacgaa cttatgacca tctttaaaca tataaaagac gataaatggt acagttacaa
     4801 gaatcataac aaaactagag acaaaggaga caatggctcc aaaactagaa gctaccccgt
     4861 caacgaccac agacatgatt tttggtaagg aaatgttgag cttctcaagt tcttgtttta
     4921 tgtctaaatc ttttagtgca gaattattcg agagatcttg cagccatttt tcaaaatctt
     4981 gccagtaacc tggtattgct tttgcgagtt cagctacttg gtcagcaagc gttggaccga
     5041 gttgcattac tgcaagaaca acaagcgtga taaaggcaat aaaaattaaa ataacactca
     5101 aaagtcgagg tacttttctt ttttctaaaa ataatacgag cgggttaaat aaatagaata
     5161 ggaaccctgc gaccaaaata ggcatgaata atgtagaaac tatgatgccg attggtgaaa
     5221 atatgtactt catttgcaat agaacgaaca aaatagctac aaccgctaaa atttcaattg
     5281 tccaaaaaaa taatttacta tctcgaaatc gtgaaaattt caaattctcc ccttctttct
     5341 aaaaccttat tgataaattt tatagtacca ttaactgctt taaatagcca ctgaattact
     5401 gctattgacg cataagtata tgtgttatac aatgtatata acagttaaag gagaggtgtt
     5461 tctatgctac ttgcgattga tcttcaatca gacgagccga tttatacaca aatatgcaat
     5521 caaataattg aaggtatggc gaaacgggaa cttttaccag gggacaaatt accttctgtt
     5581 cggagtcttg gcgcagatat tggtattaat tttcatacag taaacaaggc ctaccaaatt
     5641 ttaaaacaag aaggatttat tcaaatacat cgtcaaaagg gagtagttat tcatccggat
     5701 ggcgtagcta aggcagatga gctatttttt gctaaattac aaacgaagct aaaaccactt
     5761 atcgcggaat cggttgtgcg cggtgttacc gaagagaagt ggctcgaagt aagtaaggct
     5821 atttttgacg aaatgcatgg acggagagtg gagtagaaat ggaaatcatc atttatattt
     5881 ttgttagtat tgctatcatt tcactgcaag caataacccc ttttgtaata agaaaatcag
     5941 aatgtttcgg agtaaatgta ggcgaacgcg ctaaccgaaa tgcggaatta acgcggctaa
     6001 aaaaacaata tgtcgggcaa gtggttttgt ggacatcttt tgtagcgata attggaatcg
     6061 cgttaattca aggctttcat tcgagtgaaa atacgcaagc aggtattttt attgcttcga
     6121 tgtttagcca attaatcgtt tcttttatta tttactatcg ttttcatcac acaactttac
     6181 agtggaaaag agataaaata gaggcgggag aaatttcgac taattctatc atcatggtag
     6241 atactagttt tcatcgcaga aaaatggtta tctcgtatac atggtttgtc gtgccactgc
     6301 ttatcttcat tattacactt gcgattacgg tcgtttttta tccagtagct cctgctgact
     6361 ttccaatcca ttttgatatg agtggggcag tgacggatac ggttgccaaa tcacctagag
     6421 tcgtattgct attaccgatg atgcagctag gaatgattgc gttatttatc tttattaact
     6481 ttgttattgc taggagcaaa cagtccgtag agaacgaaaa ccctactgat tcattaaaaa
     6541 ggggactcct atttagacag gtttctagta aagcaatgtt aattatgtgt acgattatgg
     6601 taattgattt tctcatcatg caagtagtca cattacttgc acttccagct gaatggatga
     6661 tgataacaat gataatttct gttgttttga ttctgtttgg aaccgtcctt cttgctgtta
     6721 aagtagggca aggcggaagc agacttaaat ttgctgacca acctgatggt gtcaataagc
     6781 caattcggga tgatgattct ttttggaaag caggggttat ttattttaat cgaaatgatc
     6841 cagctttatt tgtagaaaaa cgctttggga ttggttggac gattaacaca gctcgccctg
     6901 ttgcttggtt atcttttatc attattatcg ctgttatcat tctcattagc atcttgtttt
     6961 aacttgctct cagacgggta tttaccatat ggtatacgga taaattagct tgtgtgagat
     7021 gcttttgtga aggagtagat aatcatggcg attagattaa agcgactgga ggaatgggaa
     7081 ggattcactg gtattgcgct cgttcgagaa ggtcttaaaa cagaagcact tcatacagaa
     7141 ataaaaacag ccttcaaaga aatgcttcaa cttgcgcgag aactagatga tttttccaaa
     7201 caaaaaacgt tttatggtat ttctgtccat aatatagaag acggaattac tcattattcg
     7261 gtaattccag tggaacaaaa atatcctcat ttacaagaac cgcttgagtg gattgaagtt
     7321 ccggctcata cgtattttgt ggctgagcat attcaggata cagacataag tgaaagtttt
     7381 gaagagattg ccagagccat tcaagaaaaa aattacaaac catatattac agcgaacaac
     7441 cccgtttttg acccactacc attcaaattg gaagtgtata cgaaacaagg aagcgacgga
     7501 gcaaatattg aaataaggat tcctgttgta aaagaattgc atacgtaaga agaagcctgg
     7561 gacttttgtt ctgggctttt ttatactagc aagctgtttt tgagtgtgct ataataaaaa
     7621 cgctattttg tgattatttt aacaagaagg aagggattca tgtgggatat tatagcccgc
     7681 aggaagtaac agagattacg attgaaaaag ggacccaaaa agcaaattca agtacgttaa
     7741 cgcttgtgtt gttaggcttt ttaggtgggg cctttatatc tcttggttac ttattataca
     7801 tacgtgcagt aggaacaatg cctcacgaat ggggaagctt tgcaacgctt atcggcgcca
     7861 gtctttttcc ggttggcctc gtttgtattt tgctaggtgg aggagaatta attaccggca
     7921 acatgatggc tgtcgcgatt gcttggtacg acaaaaagat ttccttccaa caattactta
     7981 gaaactgggc gattgtgtct gtcatgaact tagtgggcgc attttttgtc gcttacttct
     8041 tcggacattt cgttggctta acagaaggcg atttcttacc aaaaacgcta gctacagctg
     8101 gtgcaaaaat taacgatcct ttctgggttg cttttgtttc cggaattggt tgtaactggt
     8161 ttgttgggat tgcggtttgg ctttgctacg cggccaaaga tttcgcagga aaaatccttg
     8221 gtatttggtt cccggttatg gcatttgttg ctatcggatt tcagcacgtt gtcgccaaca
     8281 tgtttattat cccagctgcg attttcgctg gttactattc atgggcggat ttcatttgga
     8341 acatcatccc agtttactta ggaaatgtag tcggtggagc agtttttgtt agcttattct
     8401 acttccttgc ttataagaaa aacgcaccta aaaaagtaaa agaagaaata caccaaccaa
     8461 ttgaagaaag ttaagaccga aaaagctagt tacattcgat gtagctagct ttttttgaaa
     8521 aaaattaaag ttttttagag actgttctcg ttcccgccat gttgcgatag aatgactttt
     8581 tccaaaaacc attttgccac ttgaaaaaga aaatcctgat taaatttttc gatttgtgga
     8641 aaacactatt ataagcaacg agagcacgtg cagaaaaatt ttttgaggag tggtattttt
     8701 gagtattaaa gaaacagcct taccaaaagt tcaaacaaaa ttatttatta atggaaaatg
     8761 gacggatgga gataataaag aaacaaaaga tattgtaaac ccagcaaatg gagaagttat
     8821 tgccaaaatc gctcaagctg gaccaaacga aaccaaaaaa gccattaaag ctgcaaaaga
     8881 agcatttcct gattgggcaa aaatggaact agctgatcgc gtcaaattat tacacaaaat
     8941 tgccgattta atggaagaaa aagcagatac actagcaaaa attatgacgc ttgaacaagg
     9001 taaaccgcta aaagaatcaa aaggagaagt cctaactggc gcagaaaact tccgattcgc
     9061 tgcagaagaa gcaagaagat tatatgggga aactatccca gcgccaaaca atcacgcgtt
     9121 tatcgtcaaa aaacaaccaa ttggtgtagt tgcggccatt actccgtgga atttcccagg
     9181 tggtatggtg acacgaaaac ttgctccagc gcttgcaacc ggaaatacaa tcgtattaaa
     9241 accttccgga gatacgccgc tttcggccct agctatcttt gaaatttttg aagaagccgg
     9301 cttgccaaaa ggtgttgcca atatcgttat gggtagctcc aaagaaatcg gtgaaacatt
     9361 aactgacagt gatgatgttc gtaaactaac tttcaccggc tccacgaaag tcggtcaaac
     9421 actattcaaa caatcagccg aaacactgaa aaaaatctcg ctcgaacttg gtggacatgc
     9481 gccatttatc gtatttgatg atgcaaacct ggatgctgct gtaaatgatt tagttgccgc
     9541 aaaattccgc aataacggtc aagtatgtgt atcgccaaac cgaatttttg ttgccaaaga
     9601 aattaaagaa aaattcacta aggcgctagt tgctaaagta gaacaactaa aagtaggtaa
     9661 cggtttagat gatgtgaatg ttggtccact tatccgcgaa gatgcgattg acaaaatcga
     9721 caaacaactt aaaaatgcca cagataaagg tgccaaagtc ctaactggcg acggtcgttt
     9781 aacaggttcc gactatgaca aaggcaactt ctacaaacca actgtcttag ataacgttac
     9841 ccgtgaaatg gacatttttt atgaggaaac atttggtcca gtaatcccgc ttatcacatt
     9901 tgaaacggaa gacgaagcaa tcgaaatggc gaatgacagt gaattcggtc ttgcttctta
     9961 cttctacact aaagatttag cacgcgtaga aaaagtggga gcagcactag aatacggaat
    10021 ggtcggagca aatgaaattg ccatctctaa tccggaaact ccatttggcg gcgttaaaca
    10081 ttctggtttc ggtcgcgaaa atggccacta cggaatggaa gaatacatcc aagtgaaatt
    10141 cattaactta aaatatcgtg actaacacaa gctattaaga aactcctttg cttcaagcaa
    10201 aggggtttct tttttatgca gtttcctacc agtaggaaaa aaacatattt gtaagcggat
    10261 tcagctgttt atataataaa agtaagttaa ggaaagggag gatacaaaat gaaaaacatt
    10321 ttactcattt gtgggtcagg agcttcaagt ggattcatgg cagcagcaat cagaaaagca
    10381 gcaaaaaaac gtggagaaca agtgacggtg aaagcagcca gtgagtcaca aatagatgaa
    10441 agaattaatg aaattgatta cttattaatc gggccgcact tagcttatat gctggatgac
    10501 ttaaaacaaa aagtagccga taaaaatgtt ttagtatcaa ttattccgca agcaacttat
    10561 ggcacactta acggtgaaaa agcactcgat ctcattttaa ctatggaggg ataacacgat
    10621 gaacaacaaa gtgatggatt ttatgacaaa taaatttgct ccaaaagtaa ataaagttgt
    10681 taaaaatcct tgggtatcag caattcaaga tgcaattatg tctgcgcttc cgctcgtttt
    10741 tgtcggttct ttagtcacca tcgtttcact acttaaaaat ttatttccgg gcatgcctga
    10801 tttttcgatg ataagtaatt tttcgtttgg catgtttggg ttagtcgtgg cctttttaat
    10861 cccatattat ctgatggaga aaaaaggaaa tagcagccaa aaattaattt ctggcgcaac
    10921 tggacttgtt ctatttttaa tgctactatt tccaactatt tcagcagacg gggatgccgt
    10981 tttcatttta tctagatttg gagcgacagg gatgttctta tccattacaa ccggattatt
    11041 tgttggttgt gtgatgaact ttgctgcgaa acgatcattt ttcagtgaag atacaccgat
    11101 tccggatttt gtcgttggtt ggttcaatag cttgctacca attacattta ttctgattgt
    11161 tggttggtta ataactgttc aatttaatat tgatttcttt gaagtgattg tagcagtgtt
    11221 tagcccgctc gcgtcaatcg tacaatctta tccaggcttt gtgctttcgg ttttcattcc
    11281 agcatttctt tatacattcg ggatttctgg gtgggttatg atgcccgcga tttacccggt
    11341 ttatatggca ggactcgcag aaaactcaca agctgtagca aatggcgcaa gtgcatcgaa
    11401 catcgcaaca caagaaactg tatacgcatt aatttcaatc ggcggggtcg gcacaacctt
    11461 atcactatcc attatgatgc tcattttaag taagtcttta cagctaaaag caatcggaaa
    11521 agcagttatt gtcccatcga tttttaatat caacgaacca ttatttttcg gggcaccaat
    11581 tgccttcaac ccatacttaa tgattccaac gtggattaat gctttcttgg ttccaagcat
    11641 cgcctatttc gttatgtcga tgaacttagt aagtattccc gcgcaatcgt tcttgctatg
    11701 gtacatgcct tatcctgtaa cgtcttacct tgcaacacaa gatttccgag gtgtgattgc
    11761 ttgtttagca attatcgtca tcacatggct tgtctacttg ccgttcttta aagcatacga
    11821 caactcctta ctcaaacaag aaaaattaga tgcaatcgaa acagagaaag aaatggtaac
    11881 aaattgattg gaggaactaa aatgtcagag caagactatg ttgaagaaac agatagctta
    11941 aatgaactat ccatgaatat attaatccat gctggaaacg caagaaatga cctagtgaaa
    12001 ggtcttaatc atttagagga actagcgttt aacgaagccg aggaatttat cgcctctgca
    12061 aaaaaagaaa ttgtcatcgc gcatagtctg caaacagata cacttcaatt agaagcatca
    12121 ggcaatcaaa tccgttattc cacgctgttc tgtcatgcgc aagatacact catgacagcc
    12181 aaaagtgaaa tattaatcgg cgagcatatg ctacgtttat tcaaaaaaat gaccgaactt
    12241 acgaaaaaat aggaggtacg agcatgtttg aaaattatca atttccgaaa gactttttat
    12301 ggggaggagc tatcgcagcc aaccaagcag aaggcgcatt taaagtagat ggaaaaggaa
    12361 ttagtttagc agatttgcac aaatatcata aagggaaaac aaatgatgaa atcagtgagg
    12421 aacaacataa aggagtaagt ttggctgata tcaaagcaag tatggaagac aaagtgaact
    12481 attatccgaa acgccacggt atcgactttt atcacacgta tccagaagat ttggctttgc
    12541 ttgctgaaat gggctttaaa acatttcgaa cttcgctgga ctggacacgg atttttccaa
    12601 ctggcgaaga aacagaacca aatgaagcgg gattaaaata ttatgaccaa ttaatcgaca
    12661 aaattatcga acttggcatg gagccaatta ttacgatatt acattacgaa acgccggtgg
    12721 aaattgtctt aaacaatggc ggttggcata atcgtaaagt tattgattta tttgagaagt
    12781 acggcaaaac ggtacttgat cgctacaata aaaaagtaaa atattggatt gtcattaacc
    12841 aaattaattt aattcaattc gaaccattta actctactgc gattccatat gatgccgtcg
    12901 atgattattt atccgctacg tatcaagctg ttcataacca atttgttgca agtgcgaaaa
    12961 tttacgaata cggaaaagcg ctaaatcctg atttaatgat tggtacaatg ctcgctgatt
    13021 gcacggccta tccattctcc tgcgatccag atgatatcgt gctcgcaatg aaacgcaacc
    13081 gcatggaata tttcttcgca gacgtgcagt tccaaggcga atatccacag tatgcgctta
    13141 attactttga cgaaaataat attcatatag aaatcacaga agacgacaaa gccgttttac
    13201 aaaaaaacac catggattat ttagcacttt cctattatta ttcccaaatg gtggactcca
    13261 agaaaaatga tttggaccca gcttcaatta caccaaaccc gcatcttaaa gctaatccgt
    13321 ggggctgggc agtcgatccg aaaggcttgt ataacgcatt gtcgcagtac tgggacagat
    13381 atcataaacc aattatcatt gccgaaaatg gttttggaat gtatgacaaa ttagaaaatg
    13441 gcgaaatcca tgatgattac cggattgatt atttatccgc gcatctaaaa gaaatgaaac
    13501 gcgccatgta tgacggcgta gaaattatcg catattgcgc ttggggaccg attgatatag
    13561 ttagttgctc ctccgcacaa atggaaaaaa gatacggttt catttacgtt gatttagata
    13621 acgaaggaaa cggtacaggc aaaagaatta aaaaagacag cttttcatgg tataaaaaag
    13681 taatagagtc taatggggaa gacttagaag cttaatgtaa cagagcgcca gttgtggtag
    13741 ttgatagcta atacaactgg ctttcgatat atagggggta acaaaaaatg gatactcaaa
    13801 aagaaatact agcttatttg cataaacagg aaaataagtg ggttacctca aatgagttag
    13861 cagctttttg cgagtgtaca acacgaacca ttcgcaacaa catttctaaa ataaatgaag
    13921 cgacaccgaa tttaattcgt tctgcaaaac aaggctatca aatcaaccag cgtattccat
    13981 ttgaacttca gacagaaagt gatgtaacag aacgaaagtc aaaactctta ctcgaattaa
    14041 ttaaaaactc tactaaaggc gttgacctgt ttgaacttgc ggatatttta tatatttcag
    14101 aagtaacctt aaaaaaagac atccaacaat taaaaaacga actaaaagaa gccgatgtcc
    14161 aaatcgtcac cagtaaagac cgaatcaaat taatcggaaa agaacgtgcc aaacgaaaat
    14221 atatgatttc cttgctatat gaagaaggcg gataccgtga aagtatcaaa agtcgcattc
    14281 aagaaatgat tgaatttgtt tctatcgata aactgcaaaa catcgtaaaa gaagttttaa
    14341 cggaagaatc cattacaacc aatcaatatt cgatgatgaa cattgtctta cattacgcca
    14401 ttagcatcgt ccgaattcaa caaggaaata cactcattga aacccaaaaa acactcatcc
    14461 gaaaacactc caaagaatac gaaatatcga aaaaaattgc taaaattctc tcggaagaat
    14521 accaaatcca tttttcagag gcagagacaa aacaactcgg acttttatat gttggcttgc
    14581 aaaatgaaca atctgctaat gccaatcatg gcgaactgga ccaatttgtc gataaaaaaa
    14641 tcatcaaagc acttaaaagc gtgctcgcca atgtggaaga aacctatctc atcgatctcc
    14701 aaaatgagca actttttatc aagctagcga ttcacgtcca aagcctatac tatcgctcac
    14761 gttacaaagc gtacaccaga aatttaagct tacttgatat taaaacgtct tacccagtaa
    14821 cttttgatat tgctgtttac atttcttctt tgctacaaga aaaactagcg attgacttta
    14881 acgaagatga aatttctttt atcgcgctgc atatcggctc ttttctagaa agtgaaaacc
    14941 gagattatat tcgcttagaa ataggcctac ttattgagga ttatcacgat ttaagaacaa
    15001 atatgctgaa aaaactgcgc gcacgatttg aaaatgaagc taccatcaaa ctgatagaaa
    15061 acgaggactc tgaagaaaat tttgatatca ttttaacaac aaaccgagat attgctcttg
    15121 aaaaagcggg ttccattttt attcatccct tactaacgac gaaggatatc aagaaaatca
    15181 gcaatcgaat ccaaacaaag aaaaaaatct tggaaaatca cttgcgaggt caacaaattg
    15241 atcgctacat cgttcgttcc ctctacgcca accaaattga cccctcagaa ctgacacccg
    15301 caaaaatcag agagcaaatg atttctaaaa tggaaaaaca aaccttcgtc acgccggaat
    15361 ttaaagaaaa agtcgaaaaa agggaacgaa tggcgccaac aagcttccca tccggcattg
    15421 ctataccaca ttctatcaag aatgatgccc ttcaaagtgg tgtatctata atgacgctac
    15481 aagagccgat ttattggaat gacgtcaaaa taaaaataat tgctctcgtc gccatcagca
    15541 aaaaagatgc aacagagttc aatgattttt ttgaaaagtt tgtagaaatc gtctccgaac
    15601 cgattaatac taaacgttta tcaatggccg aaagtttcga ggagttcatc caaaaactaa
    15661 aaatgatgat ggaagaaagt gagtaaatgg ccacacataa gccgtgtaat tctatttaca
    15721 cggcttataa aggttgaagt gacgataaaa ttacgctata atataaccat caaacgaaaa
    15781 ggagtgttat cttaagccaa tgaaattcta atcctgtatt atatgaaaaa atgaagaaag
    15841 ctatccaatt ctcggataga aactattttt tcggacggga ttcgtatgtt catttcgcat
    15901 gataactctt gctacaggcc tttttttggc gtagcctcgc ggattcctct ctggaaatat
    15961 tcaggaggtt attttttatg tctacaatcg aaataaatca attaaaaata gaagtagcag
    16021 acagagtttt agtagaaatc cctcatctgc tagttagtaa aaaagcaaga atcggcatca
    16081 tcggtcaaaa tggtctagga aaaacaacac taatggaagt gattgctggc gctaaagaag
    16141 caatatctgg cacggtgact acccaaggaa aacttgctta catcaaacaa ctttccactg
    16201 atacaagtac gaaaagcggc ggcgaaaaaa caagaaaagc aattcaacat gcgatgcgcc
    16261 aaaacccaag tgttctccta gcagatgaac cgacaagcaa cctcgatgtc gaaagcgtca
    16321 aacatttaga acgtcagtgg agcgatttcc acggtgcgct cataattata tcgcatgacc
    16381 gtaccttttt agatgcactt tgtacagaaa tatgggaaat caaaaaccaa aaaattcacg
    16441 tatacaaagg aaactaccac gcgtatttag aacaaaaaca acaacaagaa aaccaagcgg
    16501 aactcgtata caaagaattt aaaaacaaaa agcaacaact acaagcctcc caaacacacc
    16561 atgaaatcga agcaggtcgc attgtcaaac ctggaaaacg cctaaacaac aaagaagcca
    16621 gcgcgtttaa agccggaaaa ggcacacaac aaaagaaaca acacagtacc atcaaagctt
    16681 tagaaaaacg aattgaacgg ctcggcaatg tcgaaaaacc acatacaact aaaccaatca
    16741 aaatgatcac cccagacaat cgcgtcataa aaaaaggtaa tacgatacta agtgtcaaag
    16801 aaacaaccta cgagatcgca ggacgaaaac tatttgaaac aaaagctttt tctattaaag
    16861 caggggataa agtggcgcta atcggtgaaa atgcgagcgg gaaaactaca tttttaaaag
    16921 aaataatcca agaaaatcct aatctcctat gtaatcccca agcgaaaatt gcttatttcg
    16981 accaagaatt gaatggatta aaccaaacga aatccctgtt agaaaacatc tcggaaatta
    17041 gcgttcaaac caagcaagta aacagagaag tactaggtag catgcatttt aaagaaagcg
    17101 atttgcataa ggaagtgcgc atgctctctg gcggggaacg agtgaagttg ctgctcagta
    17161 tgctcctcgt tagtgacgcc aatttcttga ttcttgatga accaaccaac tatttggata
    17221 tctatgcaat ggaagcgctg gaaacgttaa tcaaacaatt tgcggggaca gtactattcg
    17281 tttcgcatga tagaactttt gttaaccacg tggcagaaca attactcgtc atcgaaaata
    17341 atgaaatgac tttccaccgg atgactttcg cggaatatga agaaagtaaa gcgccaagtc
    17401 gcatcacaga agaagataag ttgattttag aaatgcgcat gtcagaaatt gcagccaagc
    17461 ttatgcaacc gaatttaaag cccacagaaa aagccatgct cgaacaagat
//
LOCUS       DABQVC010000041        17496 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.041,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000041 DABQVC010000000
VERSION     DABQVC010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17496
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.041"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            21..2651
                     /locus_tag="IBJ56_000977"
     CDS             21..2651
                     /locus_tag="IBJ56_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HAM3417238.1"
                     /translation="MLWVKESIEQLLSKLHTNLDTGLTKEQVKQKHAEFGTNEFEEGK
                     KESLLQKIGHHLVEITTIVLLFAAAISAYLAITTGYGWAKVVVILGIVVLNMVLGIYQ
                     ENSAEKALAALQSMNAHLTTVVRDGVRMQVDATELVPGDIIEIVAGDMIPADARIISS
                     SSLQVEESALTGESVPVEKDANAVVSEKAPIGDRLNMLYSGCLVTNGRATAVVVEIGM
                     ETEMGKIAGLLNSTSKLMTPLQLRLKELAKRLSIVALLAGILIFIIDVYVYGETIIET
                     LMIAISLAVAAVPETLPVIVTLTLAYGVQNMVRKNTIIRRIPAVETIGNTSVICSDKT
                     GTLTQNKMIIQQIWAADHAPIKATAEFDTAEQKVLEMLSLSSNATIDVTDGEETIIGD
                     PTESAIIRLLEEKGTTKKALEAKYPRVFELPFDSDRKLMTTIHQVEDGFLSITKGAFD
                     RIPVNFSEAFLAEAERVHDSFAEDALRVLVVAYKKYPEMPTDLSSEALETDLTFAGMV
                     GMIDPPRPESKAAVLAAKKAGIKTVMITGDHIVTASAIAKEIGILTDGDKAITGAELA
                     EMSEADLEKNIRDYAVYARVSPEDKIRIVKAWQKNGEIVTMTGDGVNDAPALKAADVG
                     AAMGITGTDVSKNAADMVITDDNFATIVDAVKEGRTAYENIRKTIYFLLSTNFSQIFI
                     MLIAIILGWGAPVVAVQLLLINVVSDGIPGFFLSREKADDSIMERKPIPKNAGIFANG
                     LGKKMATQAVVFTIVTLAGFYIGQFVTINNSIGASYEVGMTMAFVILAWSSVAHIFNV
                     RSDKSIFTIGFLSNRGLFFSAICSMLIILGLAIIPPLANMFFLVEMSLTHWILAFILS
                     MFPLLFVEIQKLIQRKRAKA"
     gene            2666..3514
                     /locus_tag="IBJ56_000978"
     CDS             2666..3514
                     /locus_tag="IBJ56_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417239.1"
                     /translation="MNETEKLVAALLERNFGKNIGTRYPDNEAAQMRAEEVIGEIAIV
                     IAPLVEKLGIESKTVKKTIPFLYELQKNQFCDMSAYPYPLLLVNGTSADTEKYWRDLP
                     TYWTDDANKIVLPYVLEHIKNNKVRQKLLAFHAWLIGEVVEMNEELGADFRIKLVFES
                     DMRIRLRVYDVEQIAIEVHFLDNHDTEQQHLGYDVSLDVDITDKARLLLRQGILTENL
                     GLEALKAYMKSVLPIAHSLKNLEYLTVEDTKKLTKLLTQEEPKIMEDTDLTSKALDFL
                     QKAAQQ"
     gene            3624..4181
                     /locus_tag="IBJ56_000979"
     CDS             3624..4181
                     /locus_tag="IBJ56_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3417240.1"
                     /translation="MIRHAKKSDAPKIAPLLLVIWKDMELPILEVETEEAITNALIEA
                     IQTEDYRYSYRHLHVYEKDGDIAGVLAGYPGKIEPEIDRAWNEIAKKHGIRYEEPIFA
                     DKETFPGEWYLDSIVTNEKYRGHGVGTALLAKLTEIAAEDGEKVVGLNCDKGNPHAKR
                     LYERLGFHVTGEIILSGHEYEHMQK"
     gene            4198..4860
                     /locus_tag="IBJ56_000980"
     CDS             4198..4860
                     /locus_tag="IBJ56_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3153 domain-containing protein"
                     /protein_id="HAM3417241.1"
                     /translation="MKKIIFAVVLSLVLILAGCADVTNTVKVDKKGEATISFDIDISS
                     VAGIFASSYSDEVEAKLKEAGFTVDKKSNTSYHIEKKLDKNETTKSDMKPEDFGVKIT
                     NSKSFFTQKIKVDADIDIEKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGENNAK
                     SVDGGKLTWDVPLDKKSEMYFEVTVPNVKNIAIVGGILLVAIIGLLIYLIKRHRKKKK
                     QL"
     gene            complement(4876..5265)
                     /locus_tag="IBJ56_000981"
     CDS             complement(4876..5265)
                     /locus_tag="IBJ56_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3417242.1"
                     /translation="MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDND
                     ALHWLELLTCLRVTGMPLAKQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDR
                     AFKKIEKKLACYEELEQAVNKSVDQFS"
     gene            5385..6209
                     /locus_tag="IBJ56_000982"
     CDS             5385..6209
                     /locus_tag="IBJ56_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAM3417243.1"
                     /translation="MNLKDTVKLANGVEMPRLGFGVWKVQDGDEAVNSVKWAIEAGYI
                     SIDTAAAYKNEEGVGQAIKESGVKREDLFVTTKLWNAEQGYESTLAAFDESLRKLELD
                     YVDLYLIHWPVKGKFKDTWRAFEKLYKDKRVRAIGVCNFHEHHLKELMEDAEIAPMVN
                     QIELHPQLTQEPLRKFCAENNIVVEAWSPLGNGKLLSNPEIKAIADAHGKSVAQVILR
                     WDLQIGVVTIPKSVHQERIIQNADIFDFELSEEEVAKISGLNKDERTGPDPDNFNF"
     gene            6288..7256
                     /locus_tag="IBJ56_000983"
     CDS             6288..7256
                     /locus_tag="IBJ56_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HAM3417244.1"
                     /translation="MDAKTIIENRFQSQKLIQTAWSDSPERIVFHFGAMQSQNYGQSL
                     WAVGSRMTTPSEKSVEQAINNGEIIRTWLLRGTIHLFSAKDYHWMMDLIAPSIDKICK
                     PYRAKLGLTDEVLHKATEVVSEIVSEQAVTRKDLAAHLATKDLPSAGIPFAQLLVYLS
                     SRKVICSGPNETFRNTMHIPADTNHFTREEAIKELAKRYIQSHAPATLKDFCFWSGLT
                     VTDAKIGIADMPKMGDYYITTLVENGTMPTTIPLAGFDEWIIGYRDRSVVLPEIWHDE
                     IMTKNGIFRPAIITEGKVVGKWEKPKKRAELDGDFWDRYIQFRNML"
     gene            7297..8577
                     /locus_tag="IBJ56_000984"
     CDS             7297..8577
                     /locus_tag="IBJ56_000984"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HAM3417245.1"
                     /translation="MNAFDKFYKKTVEERRAILAEYADLNEEEQAFLASTGALSFDKA
                     NHMIENTIGIYSLPLGLGMNMLLNDKHYVVPMVMEEPSVVAAQSAGAKLIGQNGGITG
                     SATKRKMIGQIELISVSDIQAAKENIIANEEQLIAIANQAHPSLQKRGGGAVEIQVRT
                     AQTANDETLLIVHLLVDTQEAMGANMVNTMVETLAPELEMLTNGTANMRILSNLVDEA
                     TATAVCRINPESLATKTQSGEWVRDRIIAAYEFADADIYRAATHNKGIMNGIDAVIMA
                     FGNDWRAVEAASHAYAARTGSYKPMSKWSKDAEGYLVGELTLPMPVAFVGGSIGIHPI
                     ATLSKKIARVESAKELAMLVCAVGLTQNLAALKALVTEGIQRGHMSLQAKSLAMTAGA
                     EADEIEKVATFLQESKQLNVVAAKEFINKLRSGK"
     gene            8776..10410
                     /locus_tag="IBJ56_000985"
     CDS             8776..10410
                     /locus_tag="IBJ56_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HAM3417246.1"
                     /translation="MGDINIQQMIFQFIGGLGIFLFGIKYMGDGLQMAAGDRLRDILD
                     KYTTNPFMGVLAGILVTVLIQSSSGTTVLTVGLVSAGFMTLKQAIGVIMGANIGTTVT
                     AFIIGIKLSEYALPIIAAGAVLLFFFKNHKVKNIGQVFFGFGALFYGLDLMGQGMKPL
                     AGMESFHELTAQMSTNPFLGLLIGTIFTAVVQSSSATIGILQELYGQGAIDLQAALPV
                     LFGDNIGTTITAVLAAIGASVAAKRAAATHVIFNLIGAIIFMLILPLFTSLVTYLQGL
                     FGLNPEMTIAVAHGTFNITNTFIQFWFIGAFAWLVTKLIPGDDSRIDYKTKHLDTNLI
                     DQSPGIALEMAREETLRMADYAKFGLQEARQYLVNRESKHAESTIQVEEAVNNLDRKI
                     TEYLTKISSVALTNNETEEHALMLDTVRDIERVGDHMENIVENIDQLIKNKAKMSEEA
                     SDQLIEMFELTTANFERAVKSMHKKDRALAEETILVEKDIDKAERRLRKNHIRRLNEG
                     KCQVVSGILYIDIVSDLERIGDHANNIAESVLELNE"
     gene            10563..14210
                     /gene="nifJ"
                     /locus_tag="IBJ56_000986"
     CDS             10563..14210
                     /gene="nifJ"
                     /locus_tag="IBJ56_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HAM3417247.1"
                     /translation="MRNRKTMDGNTAAAYISYAFTEVAAIYPITPSSTMAELVDEWSS
                     KNKKNLFNEPVKVVEMQSEAGAAGTVHGSLQAGALTSTYTASQGLLLMIPNMYKIAGE
                     LLPTVFHVSARTISAASLNIFGDHSDVMAARQTGFAMLAEGSVQEVMDLSAVAHLASL
                     KGSLPFLNFFDGFRTSHELQKVEVLEYDELENLLDKEALQQFRNRAMTPNNPKTLGSN
                     QNPDIFFQQRETVNRYYEEIPNMVQNYMKEINQLRGTDYDLVNYYGAEDATDVIVAMG
                     SVTPVIEQVIDYLTTEGKKVGLLNIRLYRPFPAENFLAKLPKTVERVAVLDRTKEPGS
                     GGEPLLLDVQSVLYDSETRPLVIGGRYGLGSKDVTPDQILGVYSHLTTEKPKPRFTIG
                     ITDDITNLSIENAGPSDLTSEKTFQCKFWGFGSDGTVGANKAAIKIIGDNTDLYAQGY
                     FSYDSKKSGGLTVSHLRFGEKRIRSAYLIQQADFVSCSTSAYLRSYDLLKGLKPGGTF
                     LLNTIWEGEQLERHLPAAMREYIAKNNIQFYTLNAMRIAGEAGLGRRINTVMQTAFFR
                     VTDILPFEKALADLKESAIATYGKKDMAVAEKNILAMDQTVANLHKVEVPASWANPVV
                     TAETNATTEKPAYVQNILEPVNRLEGDNLTVGDLISNGMVSGAYPPGTAAYEKRGIAL
                     EVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTREMRGKDGLRYRIQ
                     VSPMDCTGCNLCAETCPAKDKALVMKPFEEVAAKENPNWSFAINVKPKKNPGKKNTVP
                     GSQFEQPLLEFSGACAGCGETPYVKLLTQMFGDRMMIANATGCSSIWGASAPATPYTV
                     NDKGHGPAWGNSLLEDNAEYGYGMYLANQTMRKALNNKVTKALREEAMSETLREALID
                     WQTQMDVSEDTRERAEALQLALLSEMEGNEALESIYNDRELFIKRSQWMLGGDGWAYD
                     IGFGGIDHVLASGEDVNIFVMDNEVYSNTGGQSSKATPTAAIAKFASGGKSVGKKDLG
                     IMAMSYGNIYVAQIAMGANKRQTLKAIEEAEAYPGPSLIIAYTPCINHGISSGMKTML
                     SETQKAVECGYWSLYRYNPALEEKGKNPMTMDYKKVDFDQFEDFLKRETRYSALYKAN
                     PDVATKLSEKTRLDAEKRFKRYATMAGLDLEKIWKKKEATEDVKAPVDDERAARKAAR
                     EARRLAREQGK"
     gene            complement(14460..16421)
                     /locus_tag="IBJ56_000987"
     CDS             complement(14460..16421)
                     /locus_tag="IBJ56_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphatase"
                     /protein_id="HAM3417248.1"
                     /translation="MKTIDMKYLRLLAKEYPTIAKTATEIINLEAIMNLPKGTEHFLS
                     DVHGEYSAFEQVLRNGSGVVKRKIRDIFGAELDDAEINSLSTLIYYPEEKMDLLASET
                     EDLQAWYRTTLFRLIELCQYVASKYTRSKVRKAMPEDFAYILEELLHENYNEDDKKLY
                     YEEILQHIISLGRAEEFISALSLLIQQLVVDHLHIVGDVYDRGPYPDKIMDTLMNYHS
                     LDFQWGNHDILWMGAASGSRVCAANVIRISARYLNLDILEDSYGISLRPLALFADEVY
                     KDDPCTYFQPKNEENINYSNAEITQIARMHKAISIIQFKLEGEIINRRKEFDMDHRLL
                     LQFIDYKKGTIHLKGKEYLLLDSHFPTINPEKPYELTDAERELIGKITAAFKNCRRLQ
                     KHVQFLYSKGSMFLTYNGNLLYHGCIPLHEDGTFMEMKLRGEKYAGRSLLEQFEILTR
                     EAYVRPTGTKEKKYACDIVWYLWTGAISSLFGKSEMTTFERYFVAEKETHTEEKNPYY
                     KLRNNELICKQILEEFGLDGECGHIINGHTPVKEGKGESPIKANGKMLVIDGGFAKAY
                     HKETNLAGYTLLFNSYGLQLVSHQPFTTKEDAIKNETDILSTRQVIEMEINRKRVRDT
                     DIGAKLSEQAEDLKLLLDAYRNGLLHENR"
     gene            complement(16536..17447)
                     /locus_tag="IBJ56_000988"
     CDS             complement(16536..17447)
                     /locus_tag="IBJ56_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HAM3417249.1"
                     /translation="MEFLLILLPVFGIFAIGFIGQKTLKFDIPNLSKLTLYLMSPFLA
                     FNTFYTNALTIDYAYLAIYIFALCLSLILLVSLISFLLGYNLQDRCALILASAFMNNG
                     NYGTPVVLLVFGAVGLDIAVVLMVLQQLAMSTIGIYFAAKGSKDANGMKTVMKRVVRM
                     PIAYGALLGLTLQLLHVSLPSALMTCVKLVGDAAIPTIMIVLGMQLAVISFRRIELTK
                     VGIALVLKLLIAPIIAFGLTLILPVDEMTKQIMILLAAMPTAANTTLMAVQFDTKPDL
                     VSSATFISTVLSIITLPIVLYFLHPVF"
BASE COUNT         5764 a         3143 c         3750 g         4839 t
ORIGIN      
        1 ggtgcgtagg aggtagatgt atgctttggg taaaagagtc aattgagcaa cttctcagca
       61 aactacacac gaatttagac acagggttaa cgaaagaaca agtgaaacaa aaacatgcag
      121 agttcgggac gaatgaattt gaagagggga agaaagaatc acttcttcaa aaaattggtc
      181 accatttagt tgaaattacg acgattgtgt tgctttttgc agcggcgatt tccgcttatt
      241 tagcgattac gactggttat ggttgggcga aagtggttgt tattttagga attgtcgtgt
      301 tgaatatggt gctcggaatt taccaggaaa acagcgccga gaaagcactt gcggcacttc
      361 aaagtatgaa tgcgcattta acgacggtcg ttcgtgatgg tgtgcggatg caagtggacg
      421 caacggaatt agtaccaggg gatattattg aaattgttgc aggagatatg attccagcag
      481 atgcacggat tatttctagt agcagtttgc aagtcgagga atctgcgtta actggtgaga
      541 gtgttccagt tgaaaaagac gcaaatgcgg ttgtttcgga aaaagcgcca attggcgacc
      601 gtctgaatat gctttactca ggctgccttg taacgaatgg gcgcgccacg gcggttgtcg
      661 tagaaattgg gatggaaaca gagatgggga aaattgctgg acttttaaac agcacctcaa
      721 aactgatgac gcctttacaa cttcgcttaa aagaattagc aaaacgactt agtattgtag
      781 cacttttagc aggtatttta atttttataa ttgatgtata tgtttacggt gaaacgatta
      841 ttgaaacgtt gatgatcgcg atttctctag ctgtagcagc agttcctgag acattgccag
      901 ttattgtgac attgacactt gcttacggcg ttcaaaatat ggtgcggaaa aatacgatta
      961 tccgccgaat tcctgcagta gaaacaattg gaaatacttc agttatttgt tctgataaaa
     1021 caggaacatt aacgcaaaat aaaatgatta tccaacaaat ttgggcagca gaccacgcac
     1081 cgataaaagc aacagctgaa tttgatactg cagaacaaaa agtattagaa atgttgagcc
     1141 tttccagtaa cgcgacgatt gatgttacag acggcgaaga aaccatcatt ggtgacccaa
     1201 ccgaaagcgc gattatccgt ttactagaag aaaaaggaac aacgaaaaaa gcattggaag
     1261 ctaaatatcc acgcgtgttc gaacttcctt ttgactcaga tagaaagcta atgacgacaa
     1321 ttcaccaagt agaagacgga tttctttcca ttacaaaagg tgcttttgac cgcattcccg
     1381 taaacttttc cgaggcgttt ttagcggaag cggagcgggt gcatgacagt tttgcggagg
     1441 atgcacttcg ggtgttagtt gttgcctata aaaaatatcc ggaaatgccg acagacttgt
     1501 ctagtgaggc gcttgagaca gacttaacgt ttgcgggaat ggttgggatg attgacccac
     1561 cgagaccgga aagtaaagcg gctgtgttag cggcgaaaaa agcgggtatt aagactgtaa
     1621 tgattactgg tgaccatatt gtaacggcat cagcaattgc aaaagaaatt ggtattctaa
     1681 cggatgggga caaagcgatt actggagcag aactggctga aatgtcagaa gctgatttgg
     1741 agaaaaacat tcgagattat gcggtatatg cgcgtgttag tccagaagat aaaattcgaa
     1801 tcgttaaagc ttggcagaaa aatggtgaaa ttgtcacgat gacaggtgat ggtgtaaatg
     1861 atgcaccggc tctaaaagca gcggatgttg gtgctgcaat gggaattacc ggaacagatg
     1921 tatctaaaaa cgctgcagat atggttataa cagacgataa ttttgcaacg attgtagatg
     1981 cagtcaaaga agggcgtaca gcctatgaga atatccgcaa aacgatttac tttttactaa
     2041 gtacaaactt ttctcaaatt ttcattatgt taattgcgat tattcttggc tggggcgcgc
     2101 cggttgtagc tgttcagttg ctattaatca acgttgtgtc tgatgggatt ccaggcttct
     2161 tcttaagtcg tgaaaaggca gatgactcga ttatggagcg taagccaatt ccaaaaaatg
     2221 cagggatctt tgcgaatgga cttggcaaga aaatggcgac acaagcggtt gtctttacga
     2281 ttgtgacact tgcaggattt tatatcgggc agtttgtaac gattaataat tcgattggtg
     2341 caagctatga agttggaatg acaatggcat tcgttattct agcatggtca tctgtcgcgc
     2401 atattttcaa tgtaagaagt gataaatcga ttttcactat cggattttta tctaaccgtg
     2461 gtttgttctt tagcgcgatt tgttcgatgt tgattatttt aggacttgcg attattccac
     2521 cacttgcgaa catgttcttc ttagtagaaa tgagcttaac gcactggatt ctcgcattca
     2581 tcctctcgat gttcccactc ctattcgtag aaattcaaaa gcttattcag cgaaaaagag
     2641 caaaagcttg aaggagggca actatatgaa cgaaacagaa aaattggtag ccgcattatt
     2701 agagcgtaac tttggtaaaa acatcggtac acgctatcca gacaatgaag cggcgcaaat
     2761 gcgggccgag gaagtaatcg gagaaattgc tattgttatc gcaccacttg ttgaaaaact
     2821 tggaatcgaa agtaaaacgg tgaaaaaaac gattccattt ttatatgaac ttcaaaaaaa
     2881 tcaattttgt gatatgagtg cctatccgta tccgcttctt ctagtcaatg gaacgagtgc
     2941 ggatacagaa aaatattggc gagatctacc aacttactgg acagatgatg caaataaaat
     3001 tgtgctacca tatgttttgg aacacattaa aaataataaa gtacgtcaaa aactactagc
     3061 ttttcatgct tggcttatag gggaagtagt agaaatgaac gaggagctag gggcagattt
     3121 tcgtataaaa ctagtctttg agtcagatat gcgcattcgt ttacgggtgt atgacgtaga
     3181 acagattgcc attgaagtac attttttaga caatcatgat accgaacaac aacatttagg
     3241 ctatgatgtg agtttagatg tagatattac tgataaagca aggctcttat tacgtcaagg
     3301 tattttgaca gaaaatctag gcttggaagc actaaaagct tacatgaaat cagttttacc
     3361 aatagcacac agcttgaaaa acttggaata tttaacggtt gaagatacga aaaaactaac
     3421 caaattatta acgcaagaag aacctaaaat tatggaagat acagatttaa caagtaaagc
     3481 attagacttc ttacaaaaag ctgcacagca ataagaataa aatgctattt ggaggaaagt
     3541 gatcctaata gcattttatt tttgcaagtg gggcggaaag aatagtaaaa tgagacaatg
     3601 aaattagaaa tgaggatgta aaattgattc gacatgcgaa aaaatcagat gcaccaaaaa
     3661 tagcaccact tttactagta atatggaaag atatggaatt acctatttta gaagtagaga
     3721 cggaagaagc gattacaaat gcgctaattg aagcgattca gacagaagat tatcgttata
     3781 gttatagaca tctgcatgtc tatgagaagg acggggatat tgcgggagtt ttggcaggct
     3841 atcctgggaa aatcgaacct gaaatcgacc gcgcttggaa cgagattgca aagaaacacg
     3901 gcattagata cgaagaacca atatttgccg ataaagaaac atttcctggt gaatggtact
     3961 tagattcgat cgttacaaac gaaaaatatc gcggtcatgg tgttggaaca gcacttcttg
     4021 caaaattaac agaaattgct gcagaagatg gtgaaaaagt agtaggacta aattgtgaca
     4081 aaggaaatcc gcatgccaag aggctttatg aacgtctagg atttcatgtg actggagaaa
     4141 tcatacttag cggtcatgaa tatgaacata tgcaaaaata agaaatgagg ccaaccaatg
     4201 aaaaaaatta ttttcgcagt ggtactaagt ttagttctaa ttcttgctgg atgtgccgat
     4261 gtaaccaata cagtaaaagt ggataaaaaa ggggaagcga ccatttcctt tgatatcgat
     4321 atttcttctg tagcagggat ttttgcctca agttactcgg atgaagtaga agctaaactg
     4381 aaagaagctg gatttacagt agataaaaaa tcaaatacaa gctatcatat cgaaaagaaa
     4441 ctagataaaa atgaaacaac gaaaagcgat atgaaaccgg aagattttgg ggtaaaaatt
     4501 accaatagca aaagtttctt cacacaaaaa atcaaagtag atgccgatat tgacatcgaa
     4561 aagatatgga aaaaagaagt ggcggatgtt ccgtttccaa aagaaatttt aagccaagtt
     4621 gattatacat ttattttgga tttaccgatt tcgtcaattg gagagaacaa tgctaaaagt
     4681 gtggatggcg ggaagctcac ttgggatgtg ccgctcgaca aaaaatccga aatgtatttt
     4741 gaagtcactg taccaaacgt aaaaaacatt gcgattgttg gtgggattct acttgtcgca
     4801 atcattggtc tacttattta tcttattaaa agacatcgga aaaagaaaaa acaactataa
     4861 aaaagtgtgg atcagttagc taaactggtc cacactttta tttactgctt gttctaactc
     4921 ttcgtaacaa gctaattttt tctcgatttt tttaaatgct cggtctagct ctgcttgccg
     4981 gcggtacata tcttgttgat gttctttcag tacagcgatg cgttcggaga cagtaccgtc
     5041 accgccttta gttagttcaa caatttcttt ttgtttcgca aggggcattc cggtgacgcg
     5101 taaacaggtg agtaattcaa gccagtgaag ggcatcatta tcaaaaatcc ggttattatt
     5161 tttatcgcgt gctagaaaag ggattaatcc ttctcgttca taatagcgaa tcgtatgggc
     5221 gcttaaaccc gtgtgttcgg acgcttcttt gattgtttgt tgcactaaaa ccacctcttt
     5281 tttcttaata atagcacctt gaaaatcgaa aagccaaatg tttgcctttg agtatactct
     5341 aaggtgtata gtaaacgtgt tattactttt aggaggcgga taaattgaac ttaaaagata
     5401 cagtaaaact tgcaaatggt gtagaaatgc cccgtttagg atttggcgta tggaaagtgc
     5461 aggacggcga tgaagcagta aattctgtta aatgggcgat tgaagctggt tacattagta
     5521 ttgatacagc tgctgcttac aaaaatgaag aaggcgttgg tcaagcgatt aaagagtctg
     5581 gcgttaagag agaagactta ttcgtaacaa cgaaactttg gaatgcggag caaggttatg
     5641 aatccacttt ggctgcattt gatgaaagct tacgtaaatt agaacttgat tatgtagact
     5701 tatatttaat tcactggcca gtcaaaggta aattcaaaga cacttggcgc gcttttgaaa
     5761 aattatataa agataaacgc gttcgcgcaa tcggcgtatg taacttccac gaacatcacc
     5821 taaaagaatt aatggaagac gcggaaattg cgccaatggt aaaccaaatt gaattacacc
     5881 cacaactaac acaagaacca ttacgtaaat tctgtgctga aaacaacatt gtagtagaag
     5941 cttggtctcc actaggtaat gggaaattac tttctaaccc agaaatcaaa gcgattgccg
     6001 atgcacatgg taaatcagtt gcacaagtta tcttacgttg ggatttacaa atcggtgtcg
     6061 tgactattcc aaaatccgtt caccaagaac gtattatcca aaatgctgat attttcgact
     6121 tcgaattaag cgaagaagaa gtagcaaaaa tcagcggttt aaataaagac gaaagaactg
     6181 gcccagatcc agacaacttt aatttctaat agtgaaaaaa tcccttccag cttatcgaac
     6241 tggaggggat ttttatgcta caataaacta aaaaaagagg ttaacagatg gacgcaaaaa
     6301 caataataga aaaccgcttt caaagtcaga aattaataca aactgcgtgg agtgactctc
     6361 cggaaagaat tgtttttcat tttggagcaa tgcaatcgca aaactatggt cagtcgctct
     6421 gggctgttgg gagtagaatg acgacgccaa gtgaaaagtc tgtagagcaa gcgattaata
     6481 atggtgaaat tatccggaca tggcttttgc gcggaacaat tcacttgttt tcagccaaag
     6541 attatcactg gatgatggat ttaattgcgc cttccataga taaaatatgt aagccatacc
     6601 gagcgaaatt aggcttaaca gatgaggttc ttcataaggc tacagaagtc gtttcggaaa
     6661 ttgtttcaga acaagccgtt acgagaaaag acttggcggc tcatttagcg accaaagatt
     6721 taccgagtgc agggattcct tttgctcagc tgttagttta tttaagctcg cggaaagtca
     6781 tttgttcagg cccgaatgaa acttttagaa atacgatgca tattccggct gatacgaatc
     6841 atttcactcg agaagaagca ataaaagaat tagccaaacg atacatccaa agccatgcac
     6901 cagctacttt gaaagatttt tgtttttggt cgggattaac tgtgaccgat gccaaaatag
     6961 gaatagcgga tatgcctaaa atgggcgatt attacataac aacattggtt gaaaatggca
     7021 caatgccaac tacaattcca ctcgctggtt tcgatgaatg gattatcggc taccgagatc
     7081 gctccgtcgt tttaccggaa atatggcacg atgaaattat gacgaaaaat gggattttca
     7141 gaccggcgat tatcacggag ggcaaagtag tcgggaaatg ggaaaaacca aagaaacgtg
     7201 ctgaattaga cggagatttc tgggaccgtt acatccagtt tcgaaatatg ctatagtcaa
     7261 gtagatggat aaattttaat ttgaggtgat aaagctatga atgcttttga taaattttac
     7321 aaaaaaacag tagaagaacg acgtgcaatt ttggcggaat atgccgactt aaatgaagaa
     7381 gagcaggcat ttttagcttc tacaggggcg ctttcttttg ataaagcgaa tcatatgatt
     7441 gaaaacacga ttggcattta ttcgctgccg ctcggattag gaatgaacat gcttttaaat
     7501 gataaacatt atgtggtacc gatggtgatg gaagagcctt ctgttgtggc ggcccaaagc
     7561 gctggggcga aacttattgg acaaaatggc gggataactg gaagtgcaac aaaacgaaaa
     7621 atgattggtc agattgagtt gatttctgtt tctgatatcc aagcagcaaa agaaaacatc
     7681 attgcgaacg aagaacaact aattgctatc gctaaccaag ctcatccatc gttacaaaag
     7741 cgtggcggtg gtgcggttga aattcaagtt agaacagcac aaacagcgaa tgacgaaacg
     7801 ttacttatcg ttcatttact cgtagacacc caagaagcaa tgggcgcgaa tatggtcaat
     7861 acgatggtcg aaaccttagc gccagaatta gaaatgttga cgaacggaac agccaatatg
     7921 cgcattttat ctaatttagt agatgaagcg accgcaacgg ctgtttgccg gattaatcca
     7981 gaaagcttag caaccaaaac ccagagcggt gaatgggttc gtgatagaat cattgctgca
     8041 tatgaatttg ccgatgcaga catttaccga gcagcaacac ataataaagg aataatgaat
     8101 ggtattgatg cggtaattat ggcgtttggg aacgattggc gcgcggtaga agcggcaagt
     8161 cacgcctacg cagctagaac aggaagctac aaaccgatgt ctaagtggtc aaaagatgcg
     8221 gaggggtatt tggttgggga attaacgtta ccgatgccag tagcctttgt aggaggttct
     8281 atcggcatcc atccaatcgc aacactttcg aaaaaaattg ctcgagtaga atcagcgaag
     8341 gaattagcga tgttagtttg tgccgttgga ttaacgcaaa atctcgctgc tttaaaagca
     8401 ctcgtaacag aaggaattca acgcggacat atgtcgctac aagcgaaatc actagccatg
     8461 acagccggtg cagaagcaga tgaaatcgaa aaagtagcca catttttaca agaaagcaaa
     8521 caattaaatg tagttgctgc aaaagaattt attaacaaat tacgcagtgg aaaataaaat
     8581 aaattattaa gcctaccttt acaaaaactt aacaatacat tcggaacgtg ataaagcctt
     8641 tagtatcaac aactttcaga gatttgcttg gacttcactt tacaaaataa aaaaaaggta
     8701 tttacgttac ttttactttc ttttatgatg aaaaaagagt gaaattacaa gattacaaac
     8761 aaaaaggaga tattcatggg agacataaat attcagcaga tgatttttca atttatcgga
     8821 ggacttggaa tttttctttt cggtataaaa tacatgggag acggactgca aatggcagcc
     8881 ggcgacagac ttcgtgatat tttagataag tacacaacga atccttttat gggagtactt
     8941 gccgggattt tagtaaccgt attaattcaa agtagctcag gtacaactgt tttgacggtc
     9001 ggattagtaa gtgctggatt tatgacgtta aaacaagcaa ttggtgttat catgggagca
     9061 aacatcggta caaccgttac cgcctttatt attggtatta agctatccga atacgcttta
     9121 ccaataattg ctgctggtgc agtactttta ttcttcttta aaaatcacaa agtcaaaaat
     9181 attggccaag tattctttgg atttggtgcc ttattttatg gactagattt gatggggcaa
     9241 gggatgaaac ctcttgctgg aatggaatct ttccatgaat taactgctca aatgagtacg
     9301 aatccattct taggtttgtt aatcggaacg atcttcacgg cagttgtaca atcatcgagt
     9361 gcgaccatcg ggattttaca agaattatac ggacaaggtg cgattgatct tcaagcggct
     9421 ttgccagtcc tattcgggga taacattgga acgacgatta cagctgttct tgcagcaatt
     9481 ggtgcgagtg ttgcagcgaa acgtgcagca gctacacatg ttatctttaa tttaatcggt
     9541 gcaatcattt ttatgctgat actaccgcta ttcacttctc tggttaccta cctacaagga
     9601 ctgtttggac taaacccaga aatgacgatt gcggttgcgc acgggacgtt taatattacg
     9661 aataccttta ttcaattctg gtttatcggc gcatttgcat ggcttgttac gaagcttatt
     9721 cctggcgacg actcgcgaat tgactataaa accaaacatt tggatacgaa tttaattgac
     9781 caatctcctg gtatcgctct tgaaatggca cgggaggaaa cgcttcgtat ggcagattac
     9841 gcgaaattcg ggttgcaaga agcgagacaa taccttgtga accgggaatc gaagcacgcg
     9901 gagtcaacta ttcaagtgga agaagccgta aataatttag accgaaaaat caccgagtac
     9961 ttaacgaaaa tttcttctgt cgccctaacg aacaacgaga cagaagaaca tgcgctaatg
    10021 cttgataccg ttcgtgatat tgaacgcgtc ggtgatcaca tggaaaacat cgtagaaaac
    10081 atcgatcaac tgattaagaa taaagcaaaa atgtctgaag aagcttctga tcaactcatc
    10141 gaaatgtttg agctaacaac cgcgaatttc gaacgtgcag tgaaatccat gcataaaaaa
    10201 gatcgcgcac tcgcagaaga aactatttta gtagaaaaag atattgataa agcagagcgc
    10261 agattacgta aaaaccatat tcgccgctta aacgaaggca aatgccaagt cgttagcgga
    10321 attctataca ttgatatcgt cagtgattta gaacgaattg gtgaccatgc gaacaacatt
    10381 gctgaatctg ttttggaatt aaacgaataa ttctaaaggg aactagacta tttgacgtct
    10441 ggtttctttt tttgttaaaa atctacactt ttactagtcc ttgtgaagca ttgagtataa
    10501 gcggatagtg gtgtaaaata agaatgatta taaaactaga atgactggaa gtgttgagtc
    10561 ttatgcgaaa tagaaaaaca atggatggaa acacggcagc agcttatatt tcttatgctt
    10621 ttactgaagt tgcagcaatc tatccgatta ccccttcctc caccatggct gaacttgtgg
    10681 acgaatggtc atcaaagaac aagaaaaatt tattcaatga acctgtaaaa gtagtagaaa
    10741 tgcaatcaga agcaggagca gcaggaacag ttcacggatc acttcaagct ggtgcgctaa
    10801 ctagcacata cacggcgagc caaggtttac ttttaatgat tcctaatatg tacaaaattg
    10861 ccggtgaact attgccaact gttttccatg tttccgcaag aacaatttca gcagcctcgc
    10921 taaatatttt tggcgaccat agtgatgtga tggcagcacg tcaaacagga tttgcgatgc
    10981 ttgcagaagg ttccgttcaa gaagtaatgg acttatccgc ggttgctcat ctggcttcac
    11041 taaaaggaag tttgccattt ttaaatttct ttgacggctt ccgcacaagt catgaattac
    11101 aaaaagtcga agtactcgaa tatgacgaat tagaaaattt gctcgacaaa gaggcattac
    11161 aacaatttag aaatcgcgca atgacaccaa ataatcctaa aactttaggt tcgaatcaaa
    11221 atccagatat ctttttccaa caaagagaaa cggtgaaccg ctattacgag gaaatcccta
    11281 acatggttca aaattatatg aaagaaatca atcagcttcg tggcacggat tatgacttag
    11341 ttaattatta tggagcagaa gacgcaacag atgtcattgt ggcgatgggc tcagtaacgc
    11401 cagtcattga gcaagttatt gattacttaa caacggaagg caagaaagtg ggattactca
    11461 atattcgctt atatcgtcca ttcccagcag aaaacttttt agcaaaacta ccgaaaacag
    11521 tagaacgtgt ggctgtttta gaccggacga aagaacccgg atcaggcgga gaaccacttt
    11581 tactcgacgt gcaaagtgtg ctttatgata gtgaaactcg tccactagtt attggcggta
    11641 gatatggctt aggttcaaaa gatgttacac cagaccagat tctcggtgtt tattcgcacc
    11701 taacgacaga aaaaccaaaa ccgcgcttta caattggaat tacagatgat attacgaatc
    11761 tatctatcga aaatgctgga ccaagtgatc tcacttcaga aaaaactttc caatgcaaat
    11821 tctggggttt tggctcggat ggtactgttg gcgcgaataa agccgcaatc aaaattattg
    11881 gtgataacac cgatttatac gcccaaggtt acttttccta tgattcgaaa aaatcgggcg
    11941 ggctaactgt ttcgcatttg cgctttggtg aaaaacgaat tcgctcagcc tatctaatcc
    12001 aacaagcgga ttttgtctca tgctctacct cggcctattt acgttcctat gatttattaa
    12061 aaggtttaaa accaggcgga acattcttgc tcaataccat ttgggaaggc gaacagttag
    12121 aacgccattt gccagccgca atgcgcgaat atattgcgaa aaataatatt caattttata
    12181 cattaaatgc aatgagaatt gcaggagaag cgggacttgg tagaagaatt aataccgtta
    12241 tgcaaacggc ctttttccga gtgaccgaca ttttaccgtt tgaaaaagca cttgctgatt
    12301 taaaagaatc ggctatcgct acttatggga aaaaagatat ggcggttgcg gagaaaaata
    12361 ttctcgcgat ggaccaaact gttgctaatt tgcataaagt agaagttcct gcaagctggg
    12421 caaatccagt tgtaacagca gaaacaaatg caacgactga aaaaccagct tacgtacaaa
    12481 atatccttga gccagtgaat cgcttagaag gcgacaactt gactgttggt gatttaattt
    12541 cgaatggtat ggtcagtggg gcttatcctc cggggactgc agcttacgaa aaacgcggaa
    12601 ttgcactcga agttcctgaa tggatttctg aaaactgtac gatgtgtaat gaatgcgcct
    12661 ttgtttgtcc gcatgctgcc attcgtccga ttttaacaga tgaagaagaa atggaatctg
    12721 ctccagaagg ctttatgaca agagaaatgc gcggcaaaga tggccttcgt taccgtatcc
    12781 aagtttcccc aatggactgc actggttgta acttatgtgc ggaaacgtgt ccggcgaaag
    12841 ataaagcgct tgtaatgaaa ccatttgaag aagtcgcagc taaagaaaat ccgaattggt
    12901 catttgcgat taatgtgaaa ccgaagaaaa accctgggaa gaaaaatact gtacctggaa
    12961 gccaatttga acaaccgtta ttggagttct ctggtgcttg tgcaggttgc ggtgaaactc
    13021 cttatgttaa attattaacg caaatgtttg gcgaccggat gatgattgct aatgcaactg
    13081 gttgttcctc tatttggggc gcatctgcac cggcaacgcc ttatactgtc aatgataaag
    13141 gacatggacc ggcgtggggc aattcccttt tagaagataa cgcagaatat ggttatggta
    13201 tgtatttagc aaaccaaacc atgcgaaaag ctttaaataa taaagtgaca aaagcactca
    13261 gagaagaagc catgtcagaa acgttacgcg aggcgcttat tgactggcaa acacaaatgg
    13321 acgtttcaga agatacacgc gaacgggcag aagcattaca acttgcgctt cttagtgaga
    13381 tggaaggcaa tgaggcactc gaatccatct ataatgaccg agaattattt attaaacgat
    13441 cgcagtggat gcttggaggc gacggttggg cttatgatat tggcttcggc ggaattgacc
    13501 atgtcttagc atcaggcgaa gatgtaaata ttttcgtaat ggataatgaa gtatattcaa
    13561 atactggtgg acaatcatcg aaagccacac caaccgcagc aattgccaaa tttgcttcag
    13621 gtgggaaatc tgtcggtaaa aaagaccttg gtattatggc gatgagttac ggaaatatct
    13681 atgtggcgca aattgcgatg ggggcgaaca aacgtcaaac cttaaaagct attgaagaag
    13741 cagaggcata tccggggcca tctctaatta ttgcttatac gccgtgtatt aatcacggta
    13801 tttcaagcgg tatgaaaacg atgctaagtg aaacgcaaaa agcagtagaa tgtggctact
    13861 ggagcttgta ccgttataat ccggcactag aagaaaaagg aaaaaatcca atgacaatgg
    13921 attataaaaa agtcgatttc gatcaattcg aagacttcct aaaacgcgaa acacgatact
    13981 cagcgcttta caaagcaaat ccagatgttg caacaaaact atccgagaaa acccgtttag
    14041 atgcagaaaa acgctttaaa cgctatgcga cgatggctgg gcttgattta gagaaaatat
    14101 ggaagaaaaa agaagcaact gaagatgtga aagcgcccgt tgatgatgag cgagcagcaa
    14161 ggaaagcagc acgtgaagca agaagattag cgcgggagca aggtaaataa aaaaagtagg
    14221 cctagctgat gctaggccta cttttttgct tttgatctgt gggaatcaga agcgatgtgg
    14281 gaatgaatag atattctctt atgagagtta taaagaaata actactattt aaatataact
    14341 ttttttctca gaagatgcac tagaaaaatg aagagataag ttttcatata agtgttagtt
    14401 gttgcagccc aagctttttg ggacttgtga aagttttatg acaattaaaa acctattagt
    14461 taacggtttt catgaagcaa gccattacga taggcatcta gtaacaattt taaatcttct
    14521 gcctgctcac taagtttagc cccaatatcg gtatccctta cacgtttacg gttaatttcc
    14581 atttcaataa cttgacgcgt ggaaagaata tccgtttcat ttttgatagc atcctctttt
    14641 gtagtaaatg gctgatgact cactaattgt aaaccgtaac tattaaaaag tagtgtataa
    14701 cccgctaagt tcgtttcttt atgataggcc tttgcgaacc cgccatcgat gacgagcatt
    14761 ttaccattcg ctttaatcgg actttcacct tttccttctt tgactggcgt atggccgtta
    14821 atgatatgcc cacattcacc atcaagccca aattcttcta aaatttgttt gcaaattaat
    14881 tcgttattac gcaatttgta gtaaggattt ttttcttctg tgtgtgtttc tttttctgca
    14941 acaaaataac gttcaaatgt agtcatttca ctttttccaa atagcgaaga aatggcacca
    15001 gtccacaaat accaaacgat atcacacgca tatttctttt ctttagttcc agttggacgt
    15061 acgtatgctt cgcgggtaag tatttcaaac tgctctaaaa gcgaacgacc agcatatttt
    15121 tcgccacgta atttcatttc cataaaagtc ccatcttcgt ggagtggaat gcagccatgg
    15181 tagagtaaat taccattata agttaaaaac atgctgcctt ttgaatatag aaattgtaca
    15241 tgtttttgca atcgacgaca gtttttaaaa gcggcagtaa ttttcccaat aagttctctc
    15301 tccgcgtcag tgagttcata aggtttttct ggattaatcg ttggaaaatg actgtctaac
    15361 aacaggtatt cttttccctt tagatgaatt gtgccttttt tataatcgat aaattgaagt
    15421 aaaagtcggt gatccatatc aaattctttg cgtcgattta taatttcacc ttccaattta
    15481 aactgaataa tcgagatagc cttatgcatc ctagcaattt gcgtgatttc tgcattacta
    15541 tagttaatat tttcttcgtt tttgggctgg aagtaagtac aaggatcgtc tttgtacact
    15601 tcgtcggcaa aaagggccag ggggcgaaga gaaataccgt aactatcttc taaaatatct
    15661 aaatttaaat aacgggcaga aatccgaata acattagccg cacaaaccct agaaccacta
    15721 gccgcgccca tccataaaat atcgtgatta ccccactgga aatcgagcga atggtaattc
    15781 attaatgtat ccatgatttt atctggataa ggaccacgat catagacatc accaacaatg
    15841 tgcaaatgat cgacgaccaa ttgttgaata agtaacgaga gagcactaat aaattcttct
    15901 gcacgaccaa gtgaaataat atgttgtaaa atttcttcat aataaagctt tttgtcgtct
    15961 tcattgtagt tttcatgaag taactcttct aatatgtagg caaaatcttc gggcatggct
    16021 tttctcactt tagaacgtgt gtattttgaa gcaacgtact ggcagagttc aatcaaacga
    16081 aaaagtgtgg tgcgatacca agcctgcaaa tcttctgttt cactagcaag caaatccatc
    16141 ttttcttctg gataataaat cagtgtacta agtgaattaa tctctgcatc atctagctcc
    16201 gcgccaaaaa tatcacgaat tttccgtttt acaacaccag aaccattacg aagcacttgt
    16261 tcaaaagcac tatattcacc gtgaacatca cttaaaaaat gttccgttcc ttttggaagg
    16321 ttcataattg cttcgagatt aatgatttcc gtagctgtct tggcaatagt aggatattct
    16381 tttgctaaca agcgtaaata tttcatatca atagttttca ccagtccagt acctcctttt
    16441 tcaattggta tagctattat atttcttaaa tgtaagcaag gcaaacgttt tgttttataa
    16501 ttggtctata caaaaaagac gagctagagc ccgccttaga aaactggatg aagaaaatag
    16561 agcacaatgg gtaaggtaat aatacttaaa actgtactaa taaatgtggc actagaaact
    16621 aaatctggtt ttgtatcaaa ttgtacagcc attaaagtag tattcgctgc agttggcata
    16681 gctgcaagta aaatcataat ttgttttgtc atttcgtcaa cagggagaat caacgttaaa
    16741 ccaaacgcaa tgattggagc aatgagtaat ttgagtacta atgcaatgcc tacttttgta
    16801 agttcgattc gtctaaacga aataactgcc aactgcattc caaggacaat cataattgtt
    16861 ggaatagcag cgtcgccaac aagttttacg caagtcatta aagcggatgg aagtgaaaca
    16921 tgaagtaatt gaagcgtaag cccgagtaaa gccccgtaag caatcggcat ccgaacaacc
    16981 cgtttcatga ccgttttcat tccatttgca tctttacttc cttttgcggc aaaataaatc
    17041 ccaatggtac tcatagctag ttgctgcaac accattaata caacagcaat atcaagccca
    17101 acagccccaa aaacaagcaa gacaacaggt gttccataat ttccattatt cataaaagca
    17161 ctagccaaaa tgagcgcgca acgatcttgc aagttataac caagcaaaaa actaattaaa
    17221 ctgacaagca aaatcaaact cagacaaagc gcaaaaatgt aaatcgccaa atatgcataa
    17281 tctatcgtta gcgcattggt ataaaaagta ttaaatgcaa gaaacggtga cattaagtaa
    17341 agcgtgagtt tagataagtt aggaatatca aattttaaag tcttttgtcc aataaaccca
    17401 atagcgaaga tcccaaaaac tggaagtaaa ataagtagaa attccatggc gcccctcttt
    17461 tctatgtata ttgtagctta ttgtaccata aaatga
//
LOCUS       DABQVC010000042        17039 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.042,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000042 DABQVC010000000
VERSION     DABQVC010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17039
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.042"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            54..332
                     /locus_tag="IBJ56_000989"
     CDS             54..332
                     /locus_tag="IBJ56_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3116 domain-containing protein"
                     /protein_id="HAM3417250.1"
                     /translation="MDEPTKAVIYQILSKTEEQNATMDHLVFEMMQFPGAAAFTKNEL
                     LFGIYWLETYHYIFRMNENQKTRYYRTEKGHEKLAELELLKKNSKKTT"
     gene            complement(360..803)
                     /locus_tag="IBJ56_000990"
     CDS             complement(360..803)
                     /locus_tag="IBJ56_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3417251.1"
                     /translation="MTASDLEDFLSTAITDYANEKVEAGTWDEEEALAKSQDSFNKLL
                     YDGITTPNEYLYSIISGEKIGYIWFHVDETRSGKHAFIYDFVIFEAFRGKGFGTKTLE
                     ALDALAKEMQITKIELHVFAHNQTAIGLYNKVGFQNTDITMAKYL"
     gene            complement(834..1535)
                     /locus_tag="IBJ56_000991"
     CDS             complement(834..1535)
                     /locus_tag="IBJ56_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HAM3417252.1"
                     /translation="MKKTIQSVGVWGDSIMKGVLFNPEKNRYTLLKNNCIKRASEKLG
                     LTFQNHSTMGRTITKGHEILTKDLAKDATNDIAIIEFGGNDCDFNWTEVSENPTAEHI
                     PSTPLNIFETQLLEMIARLKKLDIKPILMTLPPLHAKRYFEFITRNGLNKDNILQFLG
                     GDVEMIYRWQERYSNTISRIAAETGSHIIDVRDSFLAEFHYENLLCADGIHPNEAGHI
                     AMSRKFIQYASFHKA"
     gene            complement(1620..3299)
                     /locus_tag="IBJ56_000992"
     CDS             complement(1620..3299)
                     /locus_tag="IBJ56_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417253.1"
                     /translation="MWKKHKWLIIAVLLLVIYVAPLFILGGNSHVRIHDNLDSNVTWY
                     KMVLDSGDYTAKVGTANIDQIMDDSVPRDSFDSEFVGIDWLYMIFSTPIAFAMSQLIT
                     RVFAFLGLFLWARDYLIKDKKYLVPLYFVSLAFALTPFWPSGMLSTLGMPLALWAFLN
                     IRNNKRRIWNVVILTLLPFYSSLILGFCFFLVMVGCIWLYDVFKKKQVNIRFLLSMLY
                     MTLLYALVNYRFIYAMFLHPEPDSRSEFSLPELSFLSSIRLSFKNFIIGHTHDQALAG
                     FVIIPVLLLVLALIIIKREWGKEKLFLWLFGFNLFLSFWYGFWWYRGWNVIKEHVEIM
                     RTFNFSRFHFLQPFLFYGLFALAIVYLIKKGNWWRKLAYVVVALQLVVVFANNSEIYY
                     RTGNGSPSINQFYATEQMEEIKDYIGKPQSSYRVGSIGLHPSVSQESGFYTVDGYVNS
                     YPLAYKRAFRKIIAGELDKSPVLEDYYDNWGNRCYIFSAELGKNYDFGKDSKKHIKQL
                     DFNSEAFKKVGGEYILSAVPIDNASEVGLQFEKAFDNKDSYWKIYLYKATK"
     gene            3602..8386
                     /locus_tag="IBJ56_000993"
     CDS             3602..8386
                     /locus_tag="IBJ56_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cna B-type domain-containing protein"
                     /protein_id="HAM3417254.1"
                     /translation="MLKHNWQKVFVVMVAVALIFQLVPWSNIFAGAEENQTKTTQQIA
                     QSDEQKGADENKTTVTSDNRETTKNLVNGKQLLKGSVDWNFTNKVTDANGNTKQTYAP
                     GDSLKFSISLAIPSYSESVLDETYTFWIQKDFFQGDKVTFVNPAIDGLTPRQNVFTDD
                     SMKNSIGTKTINGVEYIGYTLKFNQSPEALAKYEDEPLTNAKFDMFATINTTITTKDD
                     YKAIVIEDDKDVDISNIEVPVTPPTPDTDNGVLTASKAIDSAWRLDKDTGKYLKVATS
                     STNYTPEKDDLVFYYVYATNNSAENAVLEKMVDELPAGFSIITEGSPEWQALSTASGS
                     SLQRGWVASADQTNLAPGATRYELPFSPAQTISKNGGGIYKTIAAKVTDPTKDLTNVT
                     KSPTKGGEGKSGSVTPSGKDVYDMAITTKISSTYDKNNKYIGAVSSTTTPVSISEGST
                     VGVTYTAINQGNYTKDVVVYAYVPAGYELNNDTSDFKTTNDKWKYETTVPSGGGVWSD
                     IKVYSITLSGGMASGATATATMYMKAIGMPDDGTYSAVDFYMAGEIGSFSNFNGDSTL
                     DGAITDVDSTPDMNPGNDLISNVDGSTVKPIDGFQKEKPHVVKENAKSTATLQDEDDF
                     DFDYVTFIKTPEVIPSEGKVFEKTRLSAADAEKTARNMIGSDIMGSALKDYTPLADDG
                     RITSPKTYMVYEMNINPSGVEDTLNSSFTDTLPKGLKMLEYDIAGLNSSNKHIYGFTT
                     NKFEGTPKFTNADGQDVIVYQKGLYSEKQVCIANPTLNDVGVRYFGNNADKMGVTGSV
                     TKDARTLTLNFGQPAADPMYSETKAAYKVYMIVVIDPDEIDYSSIMQNKATYTYNDKV
                     ITSYENSEMYWDAGGGTAYAKKYVLDNKTNAYLSGSQYNVATPDADGNLSVGYKIRVR
                     SAYEFDKSSINIGDIIAADNFKSISNVEVNGYEASPNTGFQIDGELENPVPLAADKYA
                     VEAKATANTLDITNPVDIPQMQLYNVLFKVNYQKVKYGAKLVNQAAGSEVATVVPLNL
                     NLLKQDDISKTALTGYEFKAYYADENGKADLTKPVKDTNSNEIVMTDSSGAANFIPTG
                     YKTTSKNQEWKVVLVETKTPTGYESNENKEYPVTVKSDANGNLSIPATTETSLEITNN
                     DHGATTATIDNHADVKMIDVNGAKTWTGDKEADRPDSIEVQLLQDGVAYGSPITVTKA
                     DDWKYEFKNVPETNADGNKYTYTVLENTVANYTSAVTGLDINNTLIKPDVKMINLDGQ
                     KTWKNDTENDRPASIEIQLQQNGQDYGFPVTVTKDNDWKYEFKNLPETTNDGAAYNYT
                     IVEKAVPGYETKVDGMNVINTKIDAPKTTVSGEKTWKNDTAKDRPDYIEVQLLQNGQT
                     YGNPVKVTKENDWKYSFKDLPKTDANNNAYRYSVTEIAVPGYKTTTDGMNLTNTKVTD
                     EKNVTTASGTKTWVGDNEKTRPASIEVQLLQNGKAYGTPIKVTAKSNWKYNFTNLPEK
                     DKTGEKYSYTVSEKQVSGYSVKVKGMDLTNTKVTKTTPKDTPKNTPKDTPKDTPKDTH
                     STNKPSKTKKLPGTGDTNGMLLFAGGLVLLFLGLHLRRKSTK"
     gene            8483..8758
                     /locus_tag="IBJ56_000994"
     CDS             8483..8758
                     /locus_tag="IBJ56_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417255.1"
                     /translation="MKEELLQAIEVGEPVLLVTAIGYIVGIVETKGELIRLNDVYINC
                     VSASRVNRFSRGLAVNVNQVIGMQLLSKSEKDEMIGGWKAYVAPTAG"
     gene            8801..9328
                     /locus_tag="IBJ56_000995"
     CDS             8801..9328
                     /locus_tag="IBJ56_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HAM3417256.1"
                     /translation="MILLVVDTQKLIMTNNLYNFDSLVPNIEQLIVTARKNKIEIVYI
                     RHDDGPNTELTEGKEGFEIYEKFQPTTLERIFDKSVNSAFKGTGLLAYLKEKGTKKIV
                     VAGLQTDFCIDATVKCGFEHGFHMIVPAHANSTEDNHFMSGENSYKYYNEWMWPERYA
                     TCISMEETINEMEHN"
     gene            9688..11718
                     /locus_tag="IBJ56_000996"
     CDS             9688..11718
                     /locus_tag="IBJ56_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIA"
                     /protein_id="HAM3417257.1"
                     /translation="MLSGRMVLIIKYLEGKSESSIRGISKKLEISERKVRYDIDNIND
                     ALTLNQLKPILKEGKGRLVIPADLAKLALEEKETYIFAPQERINILQYLLFFNVKKVN
                     LEHLSKWMNVSRTTIKKDLLLMEVQLQKLNLQLVYKQGYKLIGNENALLNERVRILRD
                     YIDFIPNEDIETNFYRKCMLGEMKVSLKNIDINGVNKWSKQLLKQMGWILNDESYYWY
                     LANILVFCWYIKNDVTNPLKDAKLVLPIFNSQLIQGMEVILDYELSQEQLNILVGFVF
                     FTNKYASLNEEMDLITTETIVNSLIISMSEELNLPFLEDAILYKGLLNHVAPLIERVR
                     GNVQIYEDTFDVIPTEFLYILQATSKVVKTIPLLESVENESEISLLAIHFLASIQRNQ
                     REEKVHVLLVCGLGYGAIAMMKDTLNSEYQIAFVATIPEYMLKDFTAWEDVDLVITTA
                     KVTTPLPKPTVKVSPVLKECDLVELEKQGLKKKNILTSYFAINKRLSFLDGTVKQQVI
                     SVIKEELGYGHVSIPNRKLGLSDLIGIDAIQIISESLTWQEAIQRATKLLSDNHFVLP
                     AYAENIKQIQEELGFYSVKDEEFALFHGNDSQLVRMNSMALLISEQPVIFGEKQAKVI
                     FILASKDKKEQIPAIITLTKMTYQTDFISKLEQAKNPIDADRIIKKYEEEVR"
     gene            11720..12172
                     /locus_tag="IBJ56_000997"
     CDS             11720..12172
                     /locus_tag="IBJ56_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIA"
                     /protein_id="HAM3417258.1"
                     /translation="MGVKIDFLSISNINVNTKEEAILQLVNILRKADYLADKSLFEQA
                     ILERERTLSTYIGHEIGLPHAQSSGVKEPCVVVGKLSKPVKWTEEEEFVQIVFLIAVP
                     RDNQNNLHLKVLSNLARLLMHEDFRTKLSELDDTATVALLNKSVKEDN"
     gene            12173..13234
                     /locus_tag="IBJ56_000998"
     CDS             12173..13234
                     /locus_tag="IBJ56_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit EIIC"
                     /protein_id="HAM3417259.1"
                     /translation="MRTLKFLQKHLMTATSYMIPFVVAGGILFALSVMLSGQAAVPDA
                     GWLAKLNQIGAAGLALFIPILGGYIAFSMADKPGLAPGMIGAYLANEIGAGFIGGIIA
                     GFLAGFVVIQLKKIKLAPSMRTLGSIFIYPLLGTLITGGIIVFLIGEPISGFMDWMTN
                     ALNSLSGAAKVPLGALLGAMISFDMGGPVNKVAATFAQTQVDTLPYLMGGVGVAICVP
                     PIGLGVATLLFPKKFTRVEKDSGIAALLMGSVGITEGAIPFATADPLRVIPSIMVGSI
                     VGNVSAFLFGCLNHAPWGGLIVLPVVDNRIGYIASIALGAVVTAIMLRILKKDATELD
                     EALEEGQDIDDLDINFEDI"
     gene            13249..13557
                     /locus_tag="IBJ56_000999"
     CDS             13249..13557
                     /locus_tag="IBJ56_000999"
                     /EC_number="2.7.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HAM3417260.1"
                     /translation="MKIVAVTSCPSGVAHTYMSAESLELSAKKMGVTIKVETQGSSGI
                     ENKLTAKEIEEADCVIITNDVEIRESQRFKGKKVVKMSVSEIIKKSDALIKKLQTMFE
                     "
     gene            13584..14852
                     /locus_tag="IBJ56_001000"
     CDS             13584..14852
                     /locus_tag="IBJ56_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II D-tagatose-bisphosphate aldolase,
                     non-catalytic subunit"
                     /protein_id="HAM3417261.1"
                     /translation="MKLPIKKAVEALLKLQTTGDSATLIGVGPMSRNLLQASFELAKE
                     DDYPLMFIASRNQVDADELGGGYVNGWNQFSFIEAIKEVAKEVDFDGLYYVCRDHGGP
                     WQRDQERNDHLPTEKAMALGKKSYIADIEAGFDLLMIDPTKDPFEVGKVIPLETVLER
                     TVDLIAFCEEERKKRGLPEIGYEVGTEETNGGLTSTETYEKFITQLKVELEKRNLPLP
                     TFIVGQTGTLTRKTEQVGHFNFKNAYDLAQMAKKYGVGLKEHNGDYLDDVTLLEHIPS
                     EITATNVAPQYGTEETRAYLKLVELEQKLVENGLIKTPSNAREVLLIQSIKSERWRKW
                     MLDGQKDITINEIMQDDDLSLEILDIAGHYTFNDAMVKKEIHTLYANLAANNIDGKRF
                     VIDHIKRPIRNYSECYKLKGATTRIKQLAK"
     gene            14942..15646
                     /locus_tag="IBJ56_001001"
     CDS             14942..15646
                     /locus_tag="IBJ56_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HAM3417262.1"
                     /translation="MINLIFDIDDTVYDQLKPFENAFKTVFGKADHLKIENLYIKSRF
                     YSDEVYHRVVQGEMPKAAMHVYRITQALNDFDYQITKKEAEAFQHAYEQNQRKIELTS
                     GIKEILTWAKKNEITMGIITNGPKEHQQHKINDLQINDWIPTEHTFISGKVGIEKPDK
                     KIFKLVEEQIGIKGAETYYIGDSFENDVIGSKSAGWKSIWLNRRGHLIPTEAAFQPDY
                     CVENEQQLFAILQEIF"
     gene            15751..16167
                     /locus_tag="IBJ56_001002"
     CDS             15751..16167
                     /locus_tag="IBJ56_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HAM3417263.1"
                     /translation="MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSK
                     VLTMLVKAGFIESVTGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP
                     HCLIGEVMNKAEQQMEDYLSKQTVGSIVVEIEKHQH"
     gene            16180..16773
                     /locus_tag="IBJ56_001003"
     CDS             16180..16773
                     /locus_tag="IBJ56_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAM3417264.1"
                     /translation="MKHHHNHHGEAGFKRKVDYLDRPERSEVLSPEDFLQAMPIGKTA
                     SILDLGAGTGFLTIPAAKFVDNTVFALDLDAKMLELIESKAKEAGLANVETLEASMDD
                     IPLEANSVDVVLASLVLHEADSLADVLREVSRVVKTGGYFASLEFDTKGTDLKGPPME
                     IQISAEKLKEELAGFGFEVVKNWQLDEGMYVSIAEKK"
     gene            complement(16842..16931)
                     /locus_tag="IBJ56_001004"
     tRNA            complement(16842..16931)
                     /locus_tag="IBJ56_001004"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16893..16895),aa:Ser,seq:cga)
BASE COUNT         6037 a         2895 c         3379 g         4728 t
ORIGIN      
        1 ttttgtgtac catattgggg aaattgggat gttttaatag ggggattgat agaatggatg
       61 agccaaccaa agcagtgatc tatcaaattt tatctaaaac agaagaacaa aatgcgacga
      121 tggatcattt ggttttcgaa atgatgcaat tccctggtgc cgcggctttt actaagaatg
      181 aattgctgtt tggcatttat tggctagaaa cgtatcatta tatttttcga atgaatgaaa
      241 atcaaaagac gagatattac cgaacagaaa aagggcacga aaaattagca gagctagaac
      301 ttttaaaaaa gaatagtaaa aaaacaactt gattttccgg gaaatcaagt tgttttttat
      361 tataaatatt tagccattgt aatatcagtg ttttgaaaac caactttatt atataagccg
      421 atagctgttt gattgtgcgc aaatacatgt agttcgattt ttgtaatttg catttctttc
      481 gcaagcgcat ctaatgcttc taaagttttt gttccgaatc ctttaccacg gaatgcttcg
      541 aaaatcacaa aatcataaat gaaagcatgt ttaccagagc gagtttcgtc cacatggaac
      601 caaatataac cgattttttc gcctgagata atgctgtaga gatattcatt tggtgtagta
      661 attccgtcat atagcaattt gttgaaagag tcttgggatt tagctaaggc ttcttcttca
      721 tcccatgtgc cggcctcaac tttttcattt gcgtaatctg taatggctgt agataaaaaa
      781 tcttctaaat cagaagcagt catagtttgt aaatgtaaaa taaaaattcc tccttatgct
      841 ttatgaaaac ttgcgtactg aatgaatttg cgtgacatgg caatatgacc agcctcgttt
      901 ggatgaatac cgtcagcaca gagcaaattt tcataatgaa attcagcgag aaaactatca
      961 cggacatcaa taatatggct accagtttcg gctgcgatgc gcgaaatcgt attgctatat
     1021 cgttcctgcc agcgataaat catctctaca tcgccaccta aaaactgcaa aatattatct
     1081 ttatttagtc catttctcgt aatgaattca aaataacgtt ttgcgtgaag gggaggcaat
     1141 gtcattaaaa tgggtttaat atccagtttt tttagtcgtg caatcatttc aagtaattgc
     1201 gtttcaaaaa tgttaagtgg ggtgctagga atgtgctcag ctgtcggatt ttcggaaact
     1261 tccgtccagt taaaatcaca atcatttccg ccaaattcga taatggcgat atcatttgtt
     1321 gcatcttttg ctaagtcttt tgttagaatt tcatggcctt tagttatcgt acgacccatt
     1381 gtggaatgat tttgaaaagt caggccaagt ttttcggatg ctcgtttaat gcagttgttt
     1441 ttaagcaatg tatagcgatt tttttcaggg ttgaaaagaa cgcctttcat aatactatcg
     1501 ccccaaacac caactgactg aatggttttc ttcataatca tcactccttt tattaatcat
     1561 accacaaaaa aagcgaaagg cgcgattagt tcgttaagaa aaaatcacgc ctcacgcttt
     1621 tatttagttg ctttgtataa atagattttc cagtaagaat ccttattatc gaaggctttt
     1681 tcgaactgga gtccgacttc tgaagcatta tcaatcggaa cggctgatag aatatactcg
     1741 ccgccaacct ttttaaatgc ctctgaatta aaatctaact gtttaatgtg ttttttcgaa
     1801 tccttgccga aatcgtagtt tttacctaat tcggcagaaa atatataaca acgattaccc
     1861 caattatcat aataatcttc taaaacagga ctcttgtcta gctcaccagc aataattttt
     1921 cggaaagccc ttttataagc aagaggatag gaattcacat agccatcgac agtataaaag
     1981 ccactttctt gggaaacaga cgggtgcaga ccaatacttc cgacacggta acttgactgc
     2041 ggtttaccaa tataatcttt aatttcttcc atttgctccg tggcgtaaaa ttgattaatg
     2101 cttggcgagc catttccagt gcggtagtaa atctcagagt tattagcgaa aacaacaaca
     2161 agctgcagcg caactaccac ataagctaac tttcgccacc aatttccttt ttttattaaa
     2221 taaacaatcg caagtgcaaa cagtccataa aataaaaacg gttgtaaaaa atggaagcgc
     2281 gaaaagttaa atgtccgcat gatttccacg tgttctttga ttacattcca accacgatac
     2341 caccaaaatc cataccaaaa agataagaat aaattaaagc caaatagcca taaaaacagt
     2401 ttttctttgc cccattcacg tttgataata atgagtgcaa gtacaaggag taatacaggt
     2461 ataataacaa atccagccag tgcctggtca tgcgtgtgtc ctataatgaa atttttaaag
     2521 ctaagtcgga tagaacttaa aaatgataac tctggtagac taaattcgct ccttgaatcc
     2581 ggttcggggt gcaaaaacat tgcataaata aaacgataat ttacaagtgc atacagaagc
     2641 gtcatataaa gcatgctaag taaaaatcga atattcactt gttttttctt gaaaacatcg
     2701 tacaaccaaa tacatccaac cattactaaa aagaaacaaa atcctaatat taaactagaa
     2761 taaaatggaa gcaacgtcag tataaccaca ttccaaattc gccgtttatt attcctaata
     2821 tttaaaaatg cccatagagc aagcggcatt ccaagcgtac tcaacatccc tgatggccaa
     2881 aatggtgtta gcgcaaaagc taaggaaaca aaataaagtg gcacgagata ttttttatct
     2941 ttaataaggt aatcccttgc ccataaaaat aatcctaaaa atgcaaatac acgtgtaatt
     3001 aactgactca tcgcaaaggc aatgggtgtg ctgaaaatca tgtaaagcca atcaatccca
     3061 acaaactctg aatcaaatga atctctgggg acgctgtcat ccattatttg atctatattt
     3121 gctgtcccga ctttagcggt ataatccccg ctatccaaaa ccattttgta ccaagttaca
     3181 ttagaatcca agttatcatg aatccttaca tgactgttcc cgccaagaat aaataatgga
     3241 gcgacataaa ttaccaataa taatacagca ataattagcc acttatgctt tttccacata
     3301 gttctcctcc ttcattatct ctactatata tgtacccgag aaaactattt tcaattatat
     3361 caaaggaaac caggtttgtt cattaaaaaa ggtataattt taacattttt ttgcgtgtga
     3421 ttgaactgta aatatggcgg aaacgtcaca attctctctt ttatataggc agttttgtct
     3481 gattggcttg ttccagaaag ccattttagc gagtatgata cttttaagaa aactattcaa
     3541 gtagaacaaa aaaagtctac tatgagtaat ttcaataatt agtagcaaaa ggagaattat
     3601 catgctaaaa cacaactggc aaaaagtatt cgttgtaatg gttgcggttg cgcttatttt
     3661 tcaattggtt ccgtggtcta atatcttcgc cggagcagaa gaaaatcaaa caaaaacaac
     3721 ccaacaaata gcacaatcag atgaacaaaa aggagcagat gaaaacaaaa caaccgtaac
     3781 atctgacaat agagagacaa ctaaaaatct agttaatgga aagcaattac taaaaggctc
     3841 tgttgactgg aattttacaa ataaagtaac tgacgcaaac gggaatacaa aacaaactta
     3901 tgcaccggga gactcactca agttttcaat aagtttggca atcccatcct attcagaatc
     3961 agtattggat gaaacttata cattttggat acaaaaagac ttctttcaag gagacaaagt
     4021 aacatttgtt aatccagcaa ttgatggatt aacaccgaga caaaatgttt ttacagacga
     4081 ctccatgaaa aactcgattg gaacaaaaac aataaatggt gtcgagtata ttggttacac
     4141 gctcaaattt aaccaaagcc cagaagcctt ggcaaaatat gaagatgagc cgcttactaa
     4201 cgctaaattt gatatgtttg caacaataaa tacgactatt acaacgaaag atgactataa
     4261 agctattgta attgaagatg ataaagacgt agatattagt aatattgaag tccccgtgac
     4321 accaccaact cccgatacag ataatggtgt actcaccgcg tctaaagcaa tcgattctgc
     4381 ttggcggtta gataaagaca ctggaaaata tcttaaagtc gctacatcat ctacaaacta
     4441 tacacctgaa aaagatgatc tagttttcta ttatgtgtat gctacgaaca attcagcgga
     4501 aaatgccgtt ttagaaaaaa tggtagatga attaccagct ggtttttcca ttattacgga
     4561 aggctcacca gaatggcagg cgttatcaac tgcatctggc tcttcgcttc aacgcggctg
     4621 ggtagcttca gcagaccaaa caaaccttgc ccctggcgca actaggtacg aattaccatt
     4681 ttccccagct cagacaatct ccaaaaatgg tggcggtatt tataaaacga tcgcagcaaa
     4741 agtaacagat ccaacgaaag atttgactaa tgttactaaa agcccaacta aaggcggcga
     4801 aggtaaatct ggttctgtaa caccaagtgg gaaagatgtt tatgacatgg caattacgac
     4861 aaaaattagt tccacttacg ataaaaacaa taaatatatt ggtgctgtta gtagcacaac
     4921 tacgcccgtt tctatatcag aaggaagcac agttggcgta acatatacag cgattaatca
     4981 agggaattat acaaaagatg ttgtcgttta tgcctatgta ccagcaggtt atgaactaaa
     5041 taatgataca tctgatttca aaactacgaa tgataaatgg aaatacgaaa caaccgtacc
     5101 tagtggtggc ggtgtgtgga gtgatatcaa agtttactcc attacacttt ctggaggcat
     5161 ggcatcaggt gcaactgcaa ctgcgaccat gtacatgaaa gctatcggca tgccagatga
     5221 tgggacttat agcgcagtag acttttacat ggctggagaa atcggttcat tttctaactt
     5281 taatggtgat tctactttag acggagcaat taccgatgta gattcgacgc cagatatgaa
     5341 tccaggaaat gatctgatta gcaatgttga tggttctact gtaaaaccta ttgatggctt
     5401 ccaaaaagaa aaaccacatg ttgtaaaaga aaatgctaaa tcaacagcga ctttacaaga
     5461 tgaagatgat ttcgattttg attatgtcac attcattaaa acaccagaag taattccatc
     5521 agaaggaaaa gtgtttgaaa aaacacgtct atcagcagct gatgcagaaa aaacagcgcg
     5581 caatatgata ggtagcgaca tcatgggttc tgccttgaaa gactatacgc ctcttgccga
     5641 cgatggtaga attacttcac caaaaacata tatggtctat gaaatgaaca ttaacccatc
     5701 tggagtagaa gacacactaa attcttcgtt cacagataca cttccaaaag gattgaaaat
     5761 gcttgaatat gatattgctg gtttaaattc tagcaataaa cacatttatg gttttacaac
     5821 gaacaaattt gaaggtacac cgaaattcac aaatgcagac ggacaagatg ttattgttta
     5881 tcaaaaaggc ttatattccg agaaacaagt ttgtattgcc aaccctactt taaatgacgt
     5941 tggagtaagg tatttcggaa ataacgcgga taaaatgggt gtaactggtt ccgtaacaaa
     6001 agatgcacgt acactaaccc ttaattttgg acaaccggca gctgacccga tgtatagtga
     6061 aacaaaagca gcttataaag tgtatatgat tgtggtaatt gatccagacg aaattgacta
     6121 cagcagtatc atgcaaaata aagcaacata cacttacaac gataaagtta ttacttctta
     6181 tgaaaatagc gaaatgtact gggatgctgg tggcggtacg gcctatgcga aaaaatatgt
     6241 tttagataat aaaacaaatg catatttaag tggaagccaa tataatgtag ctactcctga
     6301 tgcagacggt aatttgtcag ttggctataa aattcgagta agaagtgcct atgaatttga
     6361 taaatcatct ataaacattg gagatattat tgctgcagat aattttaaat ctatctctaa
     6421 tgtagaagta aatggttatg aagcaagtcc aaacacgggc ttccaaattg acggggaact
     6481 tgaaaatcct gtaccacttg ctgcggataa gtatgcggta gaagcaaaag caactgcaaa
     6541 cacattagat atcacaaacc cagttgacat tccacaaatg caactatata acgttctttt
     6601 caaagtaaat tatcaaaaag tgaaatatgg cgcgaaacta gttaaccaag cagcagggtc
     6661 agaagttgca actgttgttc cattaaactt aaatcttcta aaacaagatg atataagcaa
     6721 aacagcattg acaggctatg aattcaaagc ttattatgca gatgaaaatg gaaaagcaga
     6781 tttaacgaaa ccggtcaaag atacaaatag taatgaaatt gttatgacag actcatccgg
     6841 cgcagcaaat ttcatcccga caggttataa aacaacttct aaaaatcaag aatggaaagt
     6901 agttcttgtt gaaacaaaga caccaactgg ttatgaatca aatgaaaata aagagtatcc
     6961 agttacagtg aaaagcgatg cgaatggcaa cttatccatt ccagccacta cagaaacaag
     7021 ccttgaaatc accaataatg atcacggcgc aacaacagct actattgaca accatgcgga
     7081 tgtgaaaatg attgatgtga atggcgcgaa aacttggact ggtgacaaag aagcagatcg
     7141 cccagattcc atcgaagtac aacttttgca agacggtgta gcatacggta gcccaattac
     7201 tgtaacaaaa gcagacgact ggaaatacga attcaaaaat gttccagaaa caaatgcaga
     7261 tggaaataaa tacacgtata cagttttaga aaatacagta gctaactaca caagtgctgt
     7321 cactggtctt gatattaaca acacgttaat caaaccagat gtaaaaatga ttaatcttga
     7381 cggacaaaaa acatggaaaa acgatacaga aaatgaccgt cccgcatcca tcgaaattca
     7441 actgcaacaa aatgggcaag attacggttt cccagtaaca gttacaaaag ataacgattg
     7501 gaaatacgaa tttaaaaacc taccagaaac aaccaatgat ggagcggctt acaactacac
     7561 aattgtcgaa aaagcagttc caggctatga aaccaaagtc gacggaatga acgtcatcaa
     7621 cacgaaaata gatgcaccaa aaaccactgt ctctggtgaa aaaacatgga aaaacgacac
     7681 agccaaagac cgtccagact atatcgaagt acaactttta caaaatggac aaacttatgg
     7741 taatccagtc aaagtaacga aagagaacga ctggaaatat agcttcaaag atctacctaa
     7801 aaccgatgct aacaacaacg cttatcgtta ctctgttact gaaatagcag ttccaggcta
     7861 caaaacaacc acagatggaa tgaacttaac caatacaaaa gtaaccgatg agaaaaatgt
     7921 aactacagcg agcggcacaa aaacttgggt gggagacaat gaaaaaacac gtcccgcatc
     7981 catcgaagtt caacttttac aaaacggtaa agcatacgga acaccaatca aagtaacagc
     8041 aaaatcgaat tggaaataca actttaccaa ccttccagag aaagacaaaa caggtgaaaa
     8101 atacagctat actgtatctg aaaaacaagt atctggctat agtgtaaaag taaaaggtat
     8161 ggacttaacg aatacaaaag taacaaaaac gacaccaaaa gatacaccaa aaaatacacc
     8221 aaaagataca ccaaaagata caccaaaaga tacacattct accaataaac caagtaaaac
     8281 gaaaaaatta cctggaactg gtgatacgaa tggtatgttg ctatttgctg gtggattagt
     8341 actattattc ttaggtctac accttagaag aaaaagtacc aaataaagaa aacagccgat
     8401 ccgagtaagc ttggatcggt ttttcttttg aataaagtta aaatcgggta tacaaataaa
     8461 aatgaaataa gggggcttca tgatgaaaga agaattactg caagcaatcg aagtcggcga
     8521 gccagtttta cttgtaacag caatcgggta tattgtagga attgtggaaa caaaaggaga
     8581 gcttattcgc ttaaatgatg tgtatatcaa ttgtgtttca gctagcaggg taaatcgttt
     8641 cagccgaggc ttagctgtga acgtcaatca agtcatcggt atgcaactat taagtaagtc
     8701 ggagaaagac gaaatgattg gcggctggaa ggcatacgtg gcacctacag ctggctaagc
     8761 tatgatataa tataaacagc acttacggag gtctgaacga atgatattat tagttgttga
     8821 tacacaaaaa ttaattatga cgaataatct atacaatttc gattcacttg tacccaatat
     8881 agaacaatta atcgtcactg ctcgaaaaaa taaaatagaa atagtttata tacgacatga
     8941 cgacggacct aatacagaac ttacagaagg aaaagaaggc ttcgaaattt acgaaaaatt
     9001 ccaaccaacc acactcgaaa gaatttttga taaaagcgtt aatagcgctt ttaaaggaac
     9061 aggcttactt gcttatctca aagaaaaagg aacgaagaaa attgtagtag caggattgca
     9121 aaccgatttt tgcattgacg ccacagtgaa atgtggtttt gaacatggct ttcacatgat
     9181 cgttcccgcc catgccaatt cgacggaaga taaccacttt atgtcagggg agaatagtta
     9241 caagtactat aatgaatgga tgtggcctga gcgttacgcg acctgtatat ctatggaaga
     9301 aacgattaat gaaatggaac ataattgata aattagaaag aaattgtata aatctaccac
     9361 ttctttcttt ttttgggaaa cagcagcatt taaaaaaata gtaagtaata tataaaaccg
     9421 attcaagaat tccttggatc ggtttttctt tagccaaatt gcataaaagt cgtctagttg
     9481 gtaaatcgag caaccgttat aataaaacag tgaactagtt aacgttttag attgaatttt
     9541 agaaaaggag atagctagac ttgtagtttt tgtaaaaaat tatttcgtat tatgtaaatt
     9601 gtggaagtgc ttacagggcg ttaacatgga attaggagca agccttctaa atcattttat
     9661 cgcaactagt ataaagaggt gatagagatg ttaagtggca gaatggtact aatcataaag
     9721 tatttagaag gcaaaagtga gtcgagtatt cggggtatca gtaaaaaact cgaaatatct
     9781 gagcggaaag ttagatatga tatcgacaat ataaatgacg cacttacgct taatcaatta
     9841 aaaccaattt tgaaggaggg aaaagggagg ttagttatac cagctgattt ggccaaatta
     9901 gcactggagg aaaaagaaac ttatattttt gctccgcagg aaagaatcaa tattttacag
     9961 tatttgctat ttttcaatgt taaaaaggtg aacttggaac atttaagtaa atggatgaat
    10021 gtttcgcgaa ctacgattaa aaaagattta ttgttaatgg aagtacagtt gcaaaagttg
    10081 aatcttcaat tggtttataa acaaggctat aaattaatcg gcaatgaaaa cgctctcttg
    10141 aatgaacgcg ttcggatttt gcgagattac attgatttta tcccaaacga agatatagaa
    10201 acaaactttt atagaaaatg tatgttaggt gagatgaaag tatcacttaa aaacattgat
    10261 ataaatggcg tgaacaagtg gtctaagcaa cttttgaaac aaatgggttg gattttaaat
    10321 gatgaatcgt attattggta tttagcgaat attttagtct tttgctggta tataaaaaat
    10381 gatgtcacta atccacttaa agatgcaaag ctggtacttc caatttttaa ttcccaatta
    10441 attcaaggga tggaagtgat attagattac gagcttagtc aggagcagtt aaatattcta
    10501 gtcggctttg tttttttcac gaacaagtat gcaagcttga atgaagaaat ggacttaatt
    10561 acaacagaaa cgatagtaaa ttcgctaatc atatctatga gtgaagaact taatttgcct
    10621 tttttagaag atgcgatttt gtataaagga ttactaaatc atgtagctcc actgattgaa
    10681 agagtgagag ggaatgtgca aatttacgaa gatacttttg atgttattcc aactgaattt
    10741 ctctatattt tacaagcaac aagcaaggtg gttaaaacta tcccgttact tgagagcgtc
    10801 gaaaatgaga gtgaaatatc tttgttggcg attcattttt tagcgagtat tcagcgtaat
    10861 cagcgcgagg agaaggtgca tgtattactt gtttgtggtc ttggctacgg agcaattgca
    10921 atgatgaaag atacactaaa tagcgagtat caaatcgctt ttgtcgcaac catccccgaa
    10981 tatatgttaa aagattttac tgcttgggaa gatgtggatt tagtcattac aacagcaaaa
    11041 gtgacaaccc cactaccaaa accgactgtc aaagtaagcc cagttttaaa agagtgtgat
    11101 ttagtggagt tagaaaagca aggcttaaaa aagaagaata ttttgactag ttactttgcg
    11161 attaataagc ggcttagttt ccttgatggc actgtgaagc aacaagttat tagcgttatt
    11221 aaggaagaac tgggttatgg gcatgttagt attccgaatc gaaagttagg gttaagtgat
    11281 ttaattggaa tagatgcgat tcagattata tcagagagtt taacgtggca agaagccatt
    11341 cagcgtgcta caaagctact atctgataat catttcgtac ttccagctta tgcggagaat
    11401 atcaaacaaa ttcaagaaga actaggcttt tattccgtta aagatgagga atttgctttg
    11461 tttcacggga atgacagcca gttagttcgg atgaatagta tggctctttt gattagtgaa
    11521 cagccggtta tatttggaga gaagcaagcc aaagtcattt ttattctcgc cagtaaagat
    11581 aaaaaagagc aaattccagc aattattacc ttaactaaaa tgacttatca aacagatttt
    11641 atttctaaat tagaacaagc aaaaaatccg attgatgcag atagaattat aaaaaaatat
    11701 gaagaggagg ttagataata tgggtgtgaa aatcgacttc ttgtctattt caaacatcaa
    11761 tgtaaatact aaagaagagg cgattctaca attagtgaat attttaagaa aagctgatta
    11821 tttggcagat aaatccctgt ttgaacaggc tattttagaa cgcgaacgaa cattatccac
    11881 atacattgga cacgaaatcg gcttgcctca tgcccaaagt agtggcgtaa aagaaccctg
    11941 cgtcgttgtt gggaaattaa gtaaacctgt gaagtggact gaagaggaag aatttgtcca
    12001 aattgtattt ttaatcgcgg ttcctagaga taaccaaaat aatttacatt taaaagtact
    12061 atccaatcta gcaagactat taatgcatga agattttcga acaaaattga gtgaattaga
    12121 cgacacggca acagtggcac tattaaacaa aagtgtgaag gaggataact aaatgagaac
    12181 gcttaaattt ttgcaaaaac atttgatgac agcaacttcg tatatgattc catttgtcgt
    12241 agctgggggg atattgtttg cgctatccgt tatgttgagc ggacaagctg ccgttcctga
    12301 tgcgggctgg ttagcaaaac tcaaccaaat tggtgcagca ggcctggctt tattcattcc
    12361 gattcttggt ggctacatag cctttagtat ggcagataaa cctgggctgg cacctgggat
    12421 gattggtgca tacttagcaa acgaaattgg tgcaggattt atcggtggta ttatcgctgg
    12481 tttcttagct ggttttgtcg taattcaatt aaagaaaatt aaattagcac cttcgatgag
    12541 aacgttagga tccattttca tttatccatt acttgggact ttgattacgg gtggaattat
    12601 cgttttcctc atcggagagc caatctcagg ttttatggat tggatgacaa atgcgctaaa
    12661 tagcttatca ggggcagcaa aagttccgct aggtgcactt cttggtgcga tgatttcctt
    12721 tgatatgggt ggacctgtaa ataaagtagc agcaacgttt gcacaaaccc aagtagatac
    12781 actcccatat ttaatgggcg gagttggtgt agcgatttgt gtaccgccaa ttggtttagg
    12841 cgtagcaaca cttctatttc caaagaaatt tactcgcgta gaaaaagatt cgggaattgc
    12901 agcactttta atgggaagcg ttggtataac agaaggagca attccttttg caacagcaga
    12961 tccattacgg gtcattccat cgattatggt tggttcgatt gtagggaacg tttcggcttt
    13021 cttatttggt tgtttaaatc acgcgccttg gggtggtttg atcgttttac ctgtagttga
    13081 taaccggatt ggttatattg cttccattgc gcttggggca gttgtgacgg caattatgct
    13141 ccgaattttg aagaaagatg ctacagagct tgacgaggca ctggaggaag ggcaagacat
    13201 agatgactta gatattaatt ttgaagacat ttagaaagga tgataacaat gaaaatagta
    13261 gcagtaactt catgtccaag cggtgtggca catacgtata tgtcagcaga atcactcgaa
    13321 ctctccgcaa aaaaaatggg cgtcactatt aaagtagaaa cacaaggctc ctctggcatc
    13381 gaaaataaat taactgcaaa agaaatcgag gaagcagatt gtgtcattat cacaaatgat
    13441 gtcgaaataa gagaaagcca acgattcaaa gggaaaaaag tggtcaaaat gagcgtttca
    13501 gaaattataa aaaaatcgga cgcgctaatt aaaaagttac aaaccatgtt cgaatgaaat
    13561 cagattttag gaggaaaaat taattgaaat taccaataaa aaaagcagta gaagcacttt
    13621 tgaaattaca aacaacagga gatagcgcta cacttatcgg cgttggacca atgtctcgca
    13681 atcttttaca agcaagtttt gaattagcga aagaagatga ttacccgctt atgttcattg
    13741 caagtcgtaa tcaagtagat gcggatgaac ttggtggtgg atatgttaat ggctggaacc
    13801 aatttagttt tattgaagca attaaagaag tggctaaaga agtggacttt gatgggctat
    13861 attatgtatg ccgtgatcac ggaggccctt ggcaacggga tcaagagaga aatgatcact
    13921 taccaacaga aaaggcgatg gcgttaggaa aaaaatctta tatagcggat attgaagctg
    13981 gctttgactt attaatgatt gacccgacca aagacccttt tgaagtggga aaagttattc
    14041 cactggaaac tgtactggaa agaacggttg atttaattgc attttgtgag gaagaacgaa
    14101 aaaaacgtgg gctaccagaa atcggttatg aagttggaac ggaagaaaca aacggtgggc
    14161 taacttcaac agaaacgtat gaaaagttca ttactcaatt aaaagtggaa ttggaaaaac
    14221 gaaatttacc attaccgact ttcatcgttg ggcaaacggg aacattaact cgtaaaaccg
    14281 agcaagtagg tcactttaat ttcaaaaacg cctatgactt agctcagatg gcaaaaaaat
    14341 atggtgtcgg tttgaaagag cataatggcg attatctgga tgacgttacg cttttagaac
    14401 atattccatc agaaataaca gcgaccaatg tagccccgca atacggaaca gaagagactc
    14461 gcgcgtattt gaaattagtt gagttagagc aaaaattagt agagaatggc ttaatcaaaa
    14521 ctccttctaa cgcacgagaa gttttactca ttcaatcgat taaaagtgaa cgctggcgca
    14581 aatggatgtt agatggacaa aaagatatta ctatcaatga aatcatgcaa gatgatgatt
    14641 tatcacttga aatcctagat atcgcaggtc attacacatt caatgatgca atggttaaga
    14701 aagaaatcca cacattatat gctaatttag ctgcgaataa tattgatgga aaacgctttg
    14761 taattgatca tattaaacgt cccatccgca actactccga atgttacaaa ttaaaaggag
    14821 ccacaacccg aattaaacaa ttagctaaat gatgtagaga gtctaagcac tttgcttagg
    14881 ctcttcctac ttttttgatt taatggtaga gtaaaaggag tgaattttgc aggaggaaat
    14941 gatgattaat ttaatttttg atattgatga cacagtttat gaccaattaa aaccatttga
    15001 aaacgcattt aaaactgttt ttggaaaagc ggaccacctg aaaatcgaaa atttatatat
    15061 taaaagtcga ttttatagtg atgaagtgta tcaccgcgtt gtccaaggcg aaatgccgaa
    15121 agcagcaatg cacgtttacc ggattacgca ggcgctaaat gattttgatt atcaaattac
    15181 taaaaaagaa gcagaagcct ttcaacacgc ctacgaacaa aaccaacgca aaatcgaact
    15241 tacgtcaggg attaaagaaa ttctcacatg ggcgaaaaag aacgaaatca cgatgggaat
    15301 cattacaaac ggaccaaaag aacatcaaca acataaaata aatgatttac aaatcaatga
    15361 ttggattcca accgagcaca cgttcatttc tggtaaagtc ggtatcgaaa aaccagacaa
    15421 gaaaatattt aagctagtag aagaacaaat cggtattaag ggtgccgaaa cctattatat
    15481 tggcgattct ttcgaaaatg atgttatcgg ttcaaaaagt gctggttgga aatcaatttg
    15541 gttgaataga cgaggacatt tgataccaac agaggcagca tttcagccag attattgtgt
    15601 tgaaaatgag caacaattat tcgcaatttt acaggagata ttttaagacc tttttccatt
    15661 tttggaaaag gttttttagt tatgaattga cacttctgat tataagagat attatagagt
    15721 ggttaagtct ttaattaaga aggtgaaaat atgaaatttt ccaaagcaac caattatgca
    15781 ctacatacga tggtttattt agctaatttg tcaccagaaa agtctgtcgg tgtgaaagaa
    15841 cttgcaacca agcaaaatgt gtcgccaact tatctatcta aagtgttgac gatgctagtg
    15901 aaagctggct ttattgagtc agtaacaggc gtcaatggtg ggtataagtt agcggaacca
    15961 gcaagtagta ttagttttct tgatgtcatt caagcgattg aagggaaggg cgcctttttc
    16021 cattgtgacc ctaaaaacca cagcgaaagc cagccgcact gcttgattgg cgaagtgatg
    16081 aataaggcgg agcaacaaat ggaagattat ttaagcaaac aaacagtagg tagtattgtc
    16141 gtagaaattg aaaaacatca acattaaagg agtgctaaaa tgaaacatca tcataatcat
    16201 cacggggaag ctggttttaa gcggaaagta gattatttgg atcgaccaga gcggagtgaa
    16261 gtgctgtcgc cagaggattt tttgcaggca atgccaatcg gaaaaacagc aagtatttta
    16321 gatttaggag cgggaacagg atttttaaca attccagctg caaaattcgt tgataataca
    16381 gtttttgcat tagatttaga tgcgaaaatg ttggaattaa ttgagtcgaa agcgaaggaa
    16441 gcaggtttgg ctaatgtaga aacgttagaa gccagcatgg atgatattcc acttgaggca
    16501 aattccgtgg atgttgtgct cgcatcgctc gtgttacatg aagcagattc gctcgcagat
    16561 gttttgcgcg aagtgagtag agttgtgaag actggcggct actttgctag tttggaattt
    16621 gacacgaaag ggactgattt gaaaggccca ccaatggaaa ttcagatttc tgcggagaaa
    16681 ttgaaggaag aacttgcggg atttgggttt gaagtggtga aaaattggca gttggatgag
    16741 ggaatgtatg tgagtattgc ggagaagaag taacagcaaa aaggttcacg tctaaaaata
    16801 gcaatcaaag ctatttttaa gcgtgaacct ttttatttct acggagaaac ggggattcga
    16861 accccggcgc ggcatacacc gcctaacaga tttcgagtct gtccccttca gccggacttg
    16921 ggtatttctc catgttgata tccaatgttt cgaggatgtt tgaatgtttt tgactataaa
    16981 atcaatttca acagatttta ttttagcata aaattaggaa aaagagaagc agtggaatc
//
LOCUS       DABQVC010000043        16822 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.043,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000043 DABQVC010000000
VERSION     DABQVC010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16822
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.043"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..794)
                     /locus_tag="IBJ56_001005"
     CDS             complement(<1..794)
                     /locus_tag="IBJ56_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HAM3417265.1"
                     /translation="MRFFRLLWVFTWKQALCCIFPGIIFISLALTKLIDIPFIARYDL
                     LLIICLGTQVLLIKFSLETWDELKVIMVFHLIGLGLEIYKVHMGSWSYPEPGLMKLFG
                     VPLYSGFMYSSVASYICQAWKRFDLKMTNWPNIWLVSSLCITIYANFFTHHFIMDFRW
                     ILIVLVLVLFRKTYVYFKVSSTQLKMPLSFSFLCIAFFIYLAENIASFYGAWSYPDQL
                     IAWRPVHVSKITSWYLLVIISIIIVAQLKFVKQKLEQTSVKAKSEAT"
     gene            complement(862..1443)
                     /locus_tag="IBJ56_001006"
     CDS             complement(862..1443)
                     /locus_tag="IBJ56_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HAM3417266.1"
                     /translation="MKNEKVNVGIVLAGGRSSRFGEPKAFFQDEATGKTWVELTVSKL
                     LPLCDMVFVSANHENHSKLVALFDAEPSIEIIPDQTAFSEFGPLGGIYAVMVEANAYQ
                     KANFLVLPVDMPFLTPKEIGRLADYPNHFAKTAQANHYLVANIPYSREVLHHLLQDEQ
                     HRVRALLEKLHTKPLAFEEDAPFRNINHQNELF"
     gene            complement(1424..2086)
                     /locus_tag="IBJ56_001007"
     CDS             complement(1424..2086)
                     /locus_tag="IBJ56_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3417267.1"
                     /translation="MLRLQFHKKLPFHDLNIDYTFEKPVTAMMGASGSGKSTLFQCVS
                     GLKSIDGGIIEFDGTPWDDSNISLHLPVTERKVGYLFQNLALFPNMNVYENIAFGLKV
                     KKKKKKEQAEIQQQVRKMSDYLQISHLLYSSVQKLSGGEKQRVAMARAMITEPKLLLL
                     DEPFNGLDEETRLICMKLVGQMAKDFHIPVIFVTHYASEAEMMTEEILVMREGRLEKR
                     KS"
     gene            complement(2089..2760)
                     /locus_tag="IBJ56_001008"
     CDS             complement(2089..2760)
                     /locus_tag="IBJ56_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter permease"
                     /protein_id="HAM3417268.1"
                     /translation="MFTSVWHTLLVATISTFLAFMTMLPLSYYFAGRKSRFQLPVEIL
                     ILLPLVLPPTVVGLVLLNVLGRNDFIGGVLWDTFDFSFIFSLSGAIVATTIIILPIMY
                     QGLKSAFLSIDHELVWAAETLSANKKQIFTKIILPNCWQPILAGVLLSFCRAMGEFGA
                     SLMVAGYIEGKTDTIASSIYFMVQQGDMRTAIYLGLINVIIGVFALLVIHVLTIRQSN
                     LTRGM"
     gene            2865..3635
                     /gene="modA"
                     /locus_tag="IBJ56_001009"
     CDS             2865..3635
                     /gene="modA"
                     /locus_tag="IBJ56_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3417269.1"
                     /translation="MKKIALIICCGLLLLLGACEDTPEKAKTTTIHISAAASLKDTID
                     DVKPLFEKANPTIKLSFDFGGSGQIRERVESGAPIDGVLLASKKDADTLIKQNLAEKT
                     KEFAGNELVLIEPKNVDQKAGMNLEQLLNDASKIAIGDPESVPAGAYAKQTLENLNLY
                     NAEKAKLVLATDVRQVLSYVEAGNADAGFVYQTDALLSKKVQVKAKIDEKLHDPIAYY
                     SAQVSDSDKKEETATFLDFMNTSEAQKILEKYGFKAAN"
     gene            3730..4953
                     /locus_tag="IBJ56_001010"
     CDS             3730..4953
                     /locus_tag="IBJ56_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HAM3417270.1"
                     /translation="MIEKRNTIRMEQAREILCNQITHLPVEKKCVTEALNQVLQEPIF
                     APFPAPYFRRSGYDGFAITEEDDENYPITLHVVAEVPCGETYDKPLKPGETVRIMTGA
                     KVPDNASKIIMLEQSREADNENEIVLINTQKSTNITEIGTEFAKGDLLLDRGHILNAG
                     SISLLSSFGIQEVQVIRKPKVAILSTGSELVSAGNPLPDGKIFNSNQPLLENLLKVHH
                     AEICAAEQLPDNYEDTKKRLLELTQIADLIITTGGVSVGDFDYMADIAKKEAELLFNK
                     IQMRPGSPTTGMWLDNTLIIALSGNPGACFTGFYLFVEPVLATLMGKDTTETTKVRAK
                     MASDYTKNNGYDRFLRGTYRLSDEGEYLVELVGSDMSSALGNLHLTTCLFKIPRGKVG
                     KLKGEEVEAWLLSSK"
     gene            4932..5417
                     /gene="mobB"
                     /locus_tag="IBJ56_001011"
     CDS             4932..5417
                     /gene="mobB"
                     /locus_tag="IBJ56_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HAM3417271.1"
                     /translation="MATILQIIGFKNSGKTTLLNALIRASRKENYTVSAIKHDAHDFS
                     VDHAGTDSYSFQESGAEAVVIANSRQYAVMEQTGIDLKTAIQKLPESDIVLIEGYKEG
                     PFPKIILIREQAEIELLNNSKAVHKIATHNPALKNEAIFIGEEKALTLFAETLIKEFL
                     K"
     gene            5414..5836
                     /locus_tag="IBJ56_001012"
     CDS             5414..5836
                     /locus_tag="IBJ56_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HAM3417272.1"
                     /translation="MKYVALQHEKIEIGPLSDKLINKNHGGTNLFVGTIREWTGDIQT
                     EEIRYTSYEEMALKELNKLAVEVETKWGADVVIVHRLGLLQITDVAVVIGVSTPHRAA
                     CYEGSRYIIERLKERVPIWKEEKDVDKTRWGGIDANNS"
     gene            5820..6068
                     /gene="moaD"
                     /locus_tag="IBJ56_001013"
     CDS             5820..6068
                     /gene="moaD"
                     /locus_tag="IBJ56_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin converting factor subunit 1"
                     /protein_id="HAM3417273.1"
                     /translation="MLTTVKFFAFLADKTHKTEVKLNLQQCQTVGEVREVISSEFPEI
                     AVDLATCMLAVNMEFQQDQDLLPEEITEIAVIPPVSGG"
     gene            6081..6563
                     /gene="moaC"
                     /locus_tag="IBJ56_001014"
     CDS             6081..6563
                     /gene="moaC"
                     /locus_tag="IBJ56_001014"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HAM3417274.1"
                     /translation="MEKDDLTHFNDEKRAKMVDVTSKSETKRRAIARATIHMNEETLA
                     RIHAGKIAKGDVLAVAQVAGIMAAKKTSELIPMCHPIMTTKADISFEDDGKTALTITS
                     EVVTVGKTGVEMEALTAVTIAALTIYDMCKAMDKGMRIEKTYLVEKTGGKSGTFKAEA
                     "
     gene            6592..7593
                     /gene="moaA"
                     /locus_tag="IBJ56_001015"
     CDS             6592..7593
                     /gene="moaA"
                     /locus_tag="IBJ56_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HAM3417275.1"
                     /translation="MQLLKDKFGRVHDYIRISVTDRCNLRCVYCMPEEGLTFLPHEKV
                     LSKDEIVSFMELMVKFGIKKVRITGGEPLLRTDIVEIVRGLGAIPEIEDISITTNAMY
                     LAKKAEALKDAGLTRVNISLDSLHEDRFKAITRGGRLQKVLDGIQKAEEVGLFPIKLN
                     VVLIKGQNDDEITDFLRFTKDKDINIRFIEYMPIGHAGTSWKEKYLPLDTIFEACNEA
                     GYEYEPVDSIRGNGPSENFRIKGAKGTFGVIHPVSAHFCDSCNRLRLTADGYIKACLY
                     WDEEMNIRPFIQDPVKLMQLVQKAIDNKPENHEMALKLQDEVQSNKPTWRRMSQIGG"
     gene            complement(7628..8116)
                     /locus_tag="IBJ56_001016"
     CDS             complement(7628..8116)
                     /locus_tag="IBJ56_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaB"
                     /protein_id="HAM3417276.1"
                     /translation="MEQKTFIKVTCSILTISDTRNLDTDTSGQLIHSALETAGHEVIS
                     RIVVPDDVTLIKQKINELAANGSFCLITNGGTGIARRDVTYEALFATIQQEIPGFGEI
                     FRMLSYEEVGSRAMVSRAFAGFSESGLLLFALPGSSNACQLAVQKLIIPELPHLIAER
                     QK"
     gene            complement(8128..9126)
                     /locus_tag="IBJ56_001017"
     CDS             complement(8128..9126)
                     /locus_tag="IBJ56_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin biosynthesis protein MoeB"
                     /protein_id="HAM3417277.1"
                     /translation="MERYDRQMRVKNIGNVGQKKLLTKTILIVGVGAIGSYAAEICAR
                     MGFGKLILIDRDYVELSNLQRQSLFTEQDALDKQAKAYAASKALQLINSDIEIEYIVD
                     DANATSLTPYAGAIDYILDCTDNFMTRDFLNQFCFSHQIPWIFTSCAGNYANLMPIIP
                     PDSACLHCLLGDIPQTNAASCDIIGVDGALIPIVAGMQVSLLTQMIINPDFKSNTYYQ
                     LDNWQFSFRSLEVKKRPDCSGCATGKMISEVPFSEQTVALCGRDTVQFRLPNKSNYHE
                     IKQMLTEQKIIYNENPALLSFQYEKFQFVIFKNGRVLLHGTENITEAKKTYHLFFN"
     gene            9258..9812
                     /locus_tag="IBJ56_001018"
     CDS             9258..9812
                     /locus_tag="IBJ56_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HAM3417278.1"
                     /translation="MKQRIETEKFYPAYPVFVLTYLNEVGEPQMSTGSSSYTLGDSIV
                     IGVSAESNASKHLHAGQKFAVNFPNTEQLGLIEQGGFSSGKRNDKIKVHQIELTKSDS
                     GGVAYIDVCPIVLECTVIQTVSDMDYHTIFAKIDSRLFEKNLVDSDGHFIHEELDLVL
                     FSGDANERKFRQLDTKIETVGGHS"
     gene            complement(9861..10412)
                     /locus_tag="IBJ56_001019"
     CDS             complement(9861..10412)
                     /locus_tag="IBJ56_001019"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HAM3417279.1"
                     /translation="MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGREMLEFLINS
                     QDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQA
                     CLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNG
                     IMFYDHINKENPSYLPPDVDVFG"
     gene            11246..12361
                     /gene="pdhA"
                     /locus_tag="IBJ56_001020"
     CDS             11246..12361
                     /gene="pdhA"
                     /locus_tag="IBJ56_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HAM3417280.1"
                     /translation="MASKTKKAIIDVKKQFEAVHKQFELVQILNEKGEIVNPDLMPDL
                     TDDELVELMTRMVWTRVLDQRSISLNRQGRLGFYAPTAGQEASQLASHYALEKHDYIL
                     PGYRDVPQLIWHGLPLTKAFLFSRGHFVGNQFPEDLNVLSPQIIIGAQIVQAAGVALG
                     LKKRKKDAVVITYTGDGGSSQGDFYEGMNFAGAYHAPAIFVVQNNKFAISTPREKQSA
                     AETLAQKAVAAGIPGVQVDGMDPLAVYAVTKFARERAVAGEGPTLIETMTYRYGPHTL
                     SGDDPTRYRTKELDGEWELKDPIVRFRTFLEGKGLWNEEKENAVIDQAKEEIKVAIKE
                     ADATPKQTVTDLLKNMYETPTAPIKEQLAIYEAKESK"
     gene            12364..13341
                     /locus_tag="IBJ56_001021"
     CDS             12364..13341
                     /locus_tag="IBJ56_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HAM3417281.1"
                     /translation="MAQKTMIQAITDALAVELEKDENVLVFGEDVGKNGGVFRATEGL
                     QEKFGEDRVFDTPLAESGIGGLAIGLALEGFRPVPEIQFFGFVFEVMDSVAGQMARMR
                     YRTGGTRTAPITIRAPFGGGVHTPEMHADNLEGLMAQSPGLKVVIPSTPYDAKGLLIS
                     AIRDNDPVIFLEHMKLYRSFREEVPEGEYTVEIGKAAVRREGTDVSIITYGAMVQESM
                     KAAEALEKDGVSVEVIDLRTISPIDVETIIASVKKTNRAVVVQEAQKQAGIAANIVAE
                     INDHAILSLEAPVMRVAAPDSVFPFSQAETVWLPNHNDIIERVKEVIAF"
     gene            13452..15086
                     /locus_tag="IBJ56_001022"
     CDS             13452..15086
                     /locus_tag="IBJ56_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HAM3417282.1"
                     /translation="MAYSFKLPDIGEGIHEGEIVKWFVQPGDKIEEDESLFEVQNDKS
                     VEEITSPVSGTIKEIKVAEGTVATVGQVLVTFDGVEGHEDDAEEESAAPKAESTESTP
                     APAQASGKGIFEFKLPDIGEGIHEGEIVKWFIQPGDKVEEDQSIFEVQNDKSVEEITS
                     PVDGTVKDILVSEGTVATVGQVLVTFEGDFEGEASHESTPESPAEEAELTNNDATSAP
                     VTGGNGTPSSKKDPNGLVIAMPSVRKYAREKGVNIAEVAGSGKNNRVVKADIDAFLNG
                     EQPAASTTTAQTEEKAAAPKAEKAAAKQPVASSDAYPETREKLTPTRRAIAKAMVNSK
                     HTAPHVTLMDEIEVTALMAHRKRFKEVAAEKGIKLTFLPYMVKALVATLRDFPVLNTT
                     LDDATEELVYKHYFNVGIAADTDHGLYVPVIKNADKKSVFQISDEINELAGKARDGKL
                     TADEMRHGSATISNIGSAGGQWFTPVINYPEVAILGVGRIAQKPIVKDGEIVAAPVLA
                     LSLSFDHRVIDGATAQKAMNNIKRLLNDPELLLMEV"
     gene            15091..16494
                     /gene="lpdA"
                     /locus_tag="IBJ56_001023"
     CDS             15091..16494
                     /gene="lpdA"
                     /locus_tag="IBJ56_001023"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HAM3417283.1"
                     /translation="MVVGDFPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIEKEYYG
                     GVCLNVGCIPSKALITIGHRFKEAGHSDNMGITADNVNLDFTKAQEWKGGVVNKLTSG
                     VKGLLKKNKVEMLEGEAFFVDDHSLRVIHPDSAQTYTFNNVIIATGSRPIEIPGFKYG
                     KRVLSSTGALALTEVPKKLVVIGGGYIGTELGGAFANLGTELTILEGGPEILPTYEKD
                     MVSLVKRNLKSKNVEMVTKALAKSAEETENGVKVTYEANGETKTIEADYVLVTVGRRP
                     NTDEIGLEQAGVKVTERGLVEVDKQGRSNVPNIFAIGDIVPGVPLAHKASYEAKIAAE
                     AIAGEKAENDYTALPAVVFSDPELATVGLTEKEAKEKGFDVKAAKFPFGGNGRALSLD
                     APEGFVRLVTRKEDGLVIGAQVAGMNASDIISEIGLAIESGITAEDIALTIHAHPSLG
                     ELTMEAAELALGRPIHM"
BASE COUNT         5697 a         3120 c         3360 g         4645 t
ORIGIN      
        1 gtggcctcgc ttttggcttt tacagaagtt tgttctaatt tttgcttaac gaatttaagt
       61 tgtgcgacga ttataatact aataataaca agtaaatacc aactcgtaat ttttgaaacg
      121 tgcaccggac gccatgcaat cagctggtct ggataagacc aagctccgta aaaactagca
      181 atgttctccg caagataaat gaaaaaggcg atgcataaaa aggaaaaaga taaaggcatt
      241 ttgagttgag tcgaactaac tttgaaataa acatatgttt ttcggaataa aacgagaact
      301 aaaacaatca aaatccaccg aaaatccatt ataaaatgat gcgtgaaaaa attagcgtaa
      361 attgttatgc aaaggctact tactaaccag atatttggcc aatttgtcat tttaagatca
      421 aatcttttcc aagcctgaca aatataactc gccacacttg aatacataaa accgctataa
      481 agcggcacac cgaaaagttt cattaaacca ggctctggat aactccatga ccccatatgt
      541 actttataga tttcaagtcc aagtccaata agatgaaaaa ccataattac cttaagttca
      601 tcccatgttt ctaaactgaa ttttataagt agcacttgcg ttccaagaca aataatcaaa
      661 agtaagtcgt agcgcgcaat aaaaggaata tcaatcaatt ttgtaagtgc aagcgaaata
      721 aagataatgc ctggaaaaat acaacaaagt gcttgcttcc aagtaaacac ccaaagtaag
      781 cggaaaaatc gcataaaaaa acctcttctc atgattttct ctagtttacc aaaaaaaact
      841 aaagaaaagg acaagaaaag gttaaaaaag ttcattttga tgattgatat ttctaaatgg
      901 ggcatcttct tcaaatgcta aaggtttggt atggagtttt tcgagtaaag ctctgacacg
      961 atgttgctcg tcttgtagta agtgatgtag cacttctcgt gagtagggaa tattggcaac
     1021 caaatagtga tttgcttgcg ctgttttagc aaaatgatta ggataatcag ccagtcgtcc
     1081 aatttctttt ggagtcaaaa aaggcatatc gacaggaagc actaggaaat tagctttctg
     1141 ataagcattt gcttctacca tcaccgcata aattcctcca agcggtccaa attcactgaa
     1201 tgcggtttga tctggaatga tttcaatgct tggttctgca tcaaaaagag ccacgagttt
     1261 tgaatgattt tcatgatttg ccgatacaaa taccatatcg caaagcggca gcaacttact
     1321 aaccgttagc tcgacccacg tttttccagt tgcctcatcc tgaaaaaacg cttttggttc
     1381 cccaaaacgg cttgagcgac caccggctaa tacaatgccg acattaactt tttcgttttt
     1441 caaggcgtcc ctctcgcata actaaaattt cttcggtcat catttctgct tccgaggcat
     1501 aatgcgtgac aaaaataacg gggatatgga agtctttggc catttgacca actaatttca
     1561 tacaaatcaa acgcgtttct tcatctaaac cattgaaagg ttcatccagt aaaagtaatt
     1621 ttggctccgt aatcattgcc cgagccatcg caacacgttg tttctcgcca ccagataatt
     1681 tctgaacgga agaataaagc aggtgagaaa tttgtagata atcactcatt tttcgtactt
     1741 gttgctgaat ttctgcttgt tcttttttct tctttttctt cactttcaag ccaaaagcga
     1801 tattttcata cacattcata tttgggaata gagctaaatt ctgaaataaa taacctactt
     1861 tgcgctctgt tacaggaaga tgtaacgaaa tattggaatc atcccacgga gtcccgtcaa
     1921 attcaataat gccgccgtca atacttttca agccactaac gcactgaaat agagttgact
     1981 tgcctgaacc acttgcgccc atcatcgcgg ttactggctt ttcaaacgta taatcaatat
     2041 ttaaatcatg aaaaggaagt tttttatgaa attgtaatcg tagcataatt acatccccct
     2101 cgttaaatta ctctggcgta tagttaatac atgaatgaca agtaaagcaa acacgccgat
     2161 aatgacgtta attaatccaa gataaatcgc agtacgcatg tctccttgtt gcaccataaa
     2221 atagatgctt gaagcaatgg tatccgtctt gccttcaata taaccagcca ccatcaaact
     2281 tgcgccaaat tcacccatcg cccgacaaaa actaagcaaa acccctgcta aaattggttg
     2341 ccagcaattc ggtaaaataa tttttgtgaa aatttgtttt ttattcgctg aaagagtctc
     2401 tgctgcccat acaagttcgt gatcaattga taaaaatgct gatttcaaac cttgatacat
     2461 aatcggtaaa ataataattg tcgttgcaac aattgcgccg ctaagggaaa aaataaagct
     2521 gaaatcaaaa gtatcccaaa gcacaccacc aataaaatca ttgcggccga ggacgttcag
     2581 taaaactaaa ccaaccacag ttggcggtaa aacaagcgga agtaaaatta aaatctccac
     2641 tggtaactgg aaacgtgatt ttcgaccggc aaaataataa ctcagtggta acatcgtcat
     2701 aaacgcgaga aacgtagaaa ttgtagctac aagtaatgta tgccaaacag atgtaaacat
     2761 aaatctcctc ctgaaccctc tagtacttct attattatcg ttctctctgg tataaaatgt
     2821 caaacttaag tacaatgtaa ctaaataaaa aagggggatg aagaatgaaa aaaatagcac
     2881 ttattatatg ttgtggatta ttactacttc tcggagcttg cgaggataca cctgagaaag
     2941 ccaaaacaac gactatacat atttcagctg cagcaagttt aaaagatacg atagatgacg
     3001 taaagccact ttttgaaaaa gctaatccaa cgattaaatt atcctttgat tttggtggtt
     3061 ctgggcaaat tcgcgaacgt gtcgaaagcg gtgcaccaat tgacggcgtc cttttagcga
     3121 gtaaaaaaga tgcggataca ctgattaagc aaaatttagc agaaaaaacg aaagaatttg
     3181 cgggaaatga actcgttcta attgaaccta aaaacgtgga tcagaaggca gggatgaact
     3241 tagaacaatt acttaatgat gcatccaaaa tcgccatcgg ggatccagaa tcagtaccag
     3301 caggcgccta tgccaaacaa acgctcgaaa acttaaatct atataatgca gaaaaagcaa
     3361 aactcgttct tgccaccgat gttcgtcaag tcttatccta tgtggaagct ggaaatgcag
     3421 atgcaggctt cgtttaccag acagatgctc tattaagcaa aaaagtacaa gtgaaggcaa
     3481 aaatcgatga gaaactccat gatccaattg cttactatag cgcacaagtc agtgactcgg
     3541 ataaaaaaga agaaaccgcg acattccttg attttatgaa tacatcagaa gcgcaaaaaa
     3601 tactggaaaa atacggattc aaagcagcaa actaaggaga agtcgcttta ctttttaaaa
     3661 caagcaaact cctgtatatt ggtactaaag aaaacgcata cattatttag gaaagggaag
     3721 tgcgcccaga tgattgaaaa aagaaatacc attagaatgg aacaagcgag agagatatta
     3781 tgtaatcaaa taacgcatct tccagtagaa aagaaatgtg tgacagaggc gttaaaccaa
     3841 gtactacaag aacctatttt cgcgccgttt cctgctccct attttaggcg ctctggttat
     3901 gatggctttg cgattactga ggaggatgac gagaattatc ctatcacttt gcacgttgta
     3961 gcagaagttc cgtgtgggga aacatacgat aaaccgctaa aacctggtga aaccgtccga
     4021 ataatgactg gagcaaaagt gccagataat gcctcgaaaa ttattatgct cgaacaatca
     4081 agagaagcgg ataacgagaa tgaaatcgta cttataaata cacaaaaatc tactaacatt
     4141 acagaaatcg gtacggagtt cgccaaagga gatttgctgt tagatcgtgg acacatttta
     4201 aatgccggtt cgataagttt actgtcatcc tttggaattc aagaagtaca agtcatcaga
     4261 aagccaaaag tagctatttt atccacaggt agtgaacttg tttctgctgg aaatccactt
     4321 ccagatggca aaatttttaa tagtaatcaa ccattactgg agaatttact aaaagtacat
     4381 catgccgaaa tttgcgcggc cgaacaatta cctgataatt atgaggatac gaaaaaacga
     4441 ttactagaat tgactcaaat agcagacttg ataatcacta caggtggtgt ttctgtaggg
     4501 gactttgact atatggctga tattgcaaaa aaagaggcag aattactttt taataaaatt
     4561 caaatgcgac cgggcagtcc gacaacaggg atgtggttgg acaacacgct tatcatcgca
     4621 ctttctggta atccaggggc atgctttaca ggtttttact tattcgtaga accggtatta
     4681 gctaccttaa tggggaaaga tacaactgag acgaccaaag tccgtgcaaa aatggcgagc
     4741 gattacacta aaaataatgg ctatgatcgt tttttacgag gaacctatcg tttgtctgac
     4801 gaaggggaat atttggttga gttggtagga agcgatatgt cgagtgcgct aggaaacctc
     4861 catttaacca cctgtttatt caaaatccct cgcggtaaag ttggaaaatt aaaaggagaa
     4921 gaggtcgaag catggctact atcctccaaa taatcggctt taaaaatagc gggaagacaa
     4981 ctttactaaa tgcactaatt cgagctagtc ggaaggaaaa ctacacagta tctgccatca
     5041 aacatgatgc acatgatttt tctgtagatc acgcgggaac ggattcctac tcgtttcaag
     5101 aaagtggtgc agaggctgtt gttattgcga attcgagaca atatgctgtg atggaacaaa
     5161 ccggcatcga tttaaaaaca gccattcaaa agttaccaga atcagatatc gttcttatag
     5221 aaggctacaa agaaggtcct tttcctaaaa ttattttaat tcgcgaacag gcggaaatcg
     5281 aacttttaaa caatagtaaa gctgtccata aaattgcgac gcataatcca gcgttaaaaa
     5341 atgaagctat tttcatcggc gaagaaaaag ctttaaccct ttttgcagaa acgttaatca
     5401 aggagttttt aaaatgaaat atgtagcttt gcaacatgaa aaaatcgaaa taggaccact
     5461 ttctgataaa ctaatcaata aaaatcacgg tgggactaat ctttttgttg gtacaattcg
     5521 agaatggacg ggtgacattc aaacagaaga aattcgttac acatcgtacg aggaaatggc
     5581 gctcaaagaa ctaaataaat tagcggtaga agtagaaaca aagtgggggg cggatgttgt
     5641 tatcgtccac cgactaggac ttttacaaat aacagatgtc gctgtggtca tcggtgtatc
     5701 aacaccacac agagccgctt gctacgaggg atccagatat attattgaac gtttaaaaga
     5761 acgggtacct atatggaaag aagaaaaaga tgtcgataaa acaaggtggg gtggcataga
     5821 tgctaacaac agttaaattt ttcgcttttt tagctgataa gacacataaa acggaagtga
     5881 aattgaattt gcagcaatgc cagacagttg gcgaggttcg agaagttatt agtagtgaat
     5941 ttcctgaaat agccgttgat ttggcaacat gtatgctagc tgtgaatatg gaatttcaac
     6001 aagatcaaga ccttttacca gaagaaataa ccgaaatcgc agtcattccg ccagtaagcg
     6061 gtggataagg agggtaatag atggaaaaag atgatttaac gcattttaac gatgaaaaac
     6121 gcgcaaaaat ggtagatgtt acgagcaaat ctgaaacaaa acgccgtgca atcgctagag
     6181 ctacgataca tatgaatgaa gaaaccttag cgcgtattca tgctggtaaa attgctaaag
     6241 gagatgtttt ggccgttgcg caagttgctg gaatcatggc ggctaaaaaa acaagcgaac
     6301 taattccaat gtgccatccg attatgacga caaaagctga tatttctttt gaagatgacg
     6361 gtaagaccgc gctaactatc acgtccgaag tcgtaaccgt tggaaagacg ggcgtcgaaa
     6421 tggaggcgct cacggcagta accattgcag cattaaccat ttatgacatg tgcaaagcaa
     6481 tggataaagg catgcggatt gaaaaaacgt atttagtgga aaaaacaggt ggaaaaagcg
     6541 ggacatttaa agcagaagcg taactatttt gtaggatagg agttttgttt tatgcaatta
     6601 ttaaaggata aatttgggcg ggtacacgat tatattcgta tttcagtaac agatcggtgt
     6661 aatttaaggt gtgtgtattg tatgcccgaa gaaggcctga catttttgcc tcatgaaaaa
     6721 gtactatcca aagatgaaat tgtcagcttt atggaattaa tggtgaaatt cggcatcaaa
     6781 aaagtccgca tcactggcgg agagccgtta ctaagaactg atatagtgga aattgttcgc
     6841 gggctgggag caattcctga aatagaggat atttcgatta caacgaatgc tatgtatttg
     6901 gcaaaaaaag cagaagcact gaaggatgcg gggctcacac gtgtgaatat cagcttagat
     6961 tctcttcatg aagatcgttt taaagcaatt acacgaggtg gccgtttgca aaaagtactt
     7021 gatggtattc aaaaagcaga agaagttgga ctgttcccaa ttaagcttaa tgtcgtacta
     7081 attaaaggac aaaacgatga cgaaataact gatttccttc gatttacaaa agataaagat
     7141 attaatattc gtttcattga atacatgcca attggtcatg ctggtacgag ttggaaagaa
     7201 aaatatttgc cgcttgatac aatttttgaa gcttgtaatg aagctggtta tgagtatgaa
     7261 ccagtggact cgattcgtgg aaatggcccc tccgaaaatt tccgtataaa aggagcgaaa
     7321 gggacgtttg gtgtgattca cccggttagc gctcattttt gtgatagttg caaccgactc
     7381 agacttactg cagatggcta tattaaagca tgtttatact gggatgaaga aatgaatatc
     7441 cgcccattta tccaagatcc agtgaaatta atgcaattgg tgcaaaaagc aattgataat
     7501 aagcctgaaa atcatgaaat ggcattaaaa ttacaagatg aagtacaatc taataaacca
     7561 acttggcggc gtatgagtca aattggagga taaataaaac atccggtcac atgtgtggtc
     7621 ggatgtttta tttttgtcgt tctgctatta aatgaggtaa ttctgggata atcaattttt
     7681 gaacagcgag ctggcaagcg ttacttgatc caggcaacgc aaaaagcagt aagccgcttt
     7741 ctgaaaagcc agcgaatgca cgagacacca tggcgcgact accaacttct tcgtaactga
     7801 gcatcctgaa aatttcacca aacccaggga tttcttgctg aatcgttgcg aataatgctt
     7861 catacgtaac atcacgccta gcaataccgg taccaccatt tgtgataagg caaaaggacc
     7921 cattagctgc taactcgttt attttttgct taatgagcgt aacatcatca ggcacgacaa
     7981 tccgcgaaat aacctcatgc ccagcagttt ctaaggcaga gtgaatcagt tgaccactag
     8041 tatccgtatc caaattcctt gtatcactaa tcgttaaaat actacaagtt accttaataa
     8101 atgttttttg ttccataact gcctccttta attgaaaaat aagtgatatg tttttttcgc
     8161 ttctgttata ttttctgtcc catgaagtaa cacgcgtcca tttttgaaaa taacaaattg
     8221 aaatttttcg tattggaaac tgagtaaagc gggattttca ttataaataa ttttttgttc
     8281 cgtcagcatt tgtttaattt cgtgataatt gcttttattt ggcagacgaa attgtactgt
     8341 atctcttccg caaagagcga ctgtttgctc ggaaaaaggc acttctgaaa tcatttttcc
     8401 agttgcgcaa ccagagcaat cggggcgttt cttgacttca agagaccgga aagaaaattg
     8461 ccaattatct agttgatagt aggtatttga tttgaaatca ggattgatta tcatttgtgt
     8521 aagtaaagaa acttgcatgc ccgcgacaat cggaatcagc gcaccatcca caccgataat
     8581 atcgcaactt gctgcgttgg tttggggaat atcaccaagt aaacagtgta aacaagcaga
     8641 gtcgggtgga ataattggca tgagattcgc ataatttcca gcacacgagg tgaaaatcca
     8701 tggaatttga tggctgaaac aaaattgatt taaaaagtcg cgcgtcataa aattatctgt
     8761 acaatcaagt atgtaatcaa ttgctccggc ataaggcgtt aaacttgttg cgttcgcatc
     8821 atcaactata tattcgattt caatatcgct attaattaat tgtaacgctt tggatgccgc
     8881 atacgctttt gcttgtttgt ctaatgcatc ttgttccgtg aaaagcgatt ggcgctgcaa
     8941 gttacttagc tccacatagt cacgatcaat taaaattaac tttccaaagc ccattcgtgc
     9001 acaaatttct gcggcatatg aaccaatcgc accaacgcca acaatcaaaa tcgttttcgt
     9061 gagtaacttt ttttgaccaa catttccgat gttcttaaca cgcatctgtc tatcataacg
     9121 ttccaatttt ccaccttctt tccaatctta ttttaccaga aaaacacata aagcgcttac
     9181 ttgtaaggtt ttaatttatt cttgaaatct tagtatggca tcatttataa tgaaagaaaa
     9241 aactagaggt gctaactttg aaacagcgca tagaaacaga aaaattttat ccagcttatc
     9301 cagtctttgt attaacgtat ttgaatgagg ttggagaacc gcaaatgtca acgggatcat
     9361 catcgtacac attaggagat agtattgtta taggcgtgtc agcagaaagt aatgccagca
     9421 aacacttgca tgctggccaa aaatttgcag taaattttcc aaacacggag cagttaggat
     9481 tgattgagca agggggattc tcgtcaggaa agcgtaacga taaaataaaa gttcatcaaa
     9541 tagaattaac caaaagtgat agtgggggag tagcttacat agatgtgtgt ccgattgttc
     9601 tcgaatgcac cgtgattcaa acagtttctg acatggacta tcatactatc tttgctaaaa
     9661 ttgactcgcg attatttgaa aaaaatttag tggattcaga tggtcatttt attcacgaag
     9721 aacttgattt agtgctattc tcaggcgatg caaatgaacg taaattcaga cagcttgata
     9781 caaaaataga aacagttggt ggtcactcat aaagtcaaaa atccccgcag gatcttaatt
     9841 cctgcgggga tttattcaat ttaaccaaac acatccacat ctggtggcaa gtatgatgga
     9901 ttttctttat taatatgatc ataaaacata ataccgttca aatgatcgat ttcgtgttga
     9961 ataacaatcg ctggataacc tttgaaacgt aatttaagcg gtgtaccatt ttcgtcaaag
    10021 gcatcaatgg ttacacgttc acttcggacc acataccctg gaacttctcg gtcaacagaa
    10081 agacaacctt caccaccaga aagacaagct tgctgaacag aatggctacg aatttttgga
    10141 ttataaagca cataactata aagacgatct ttttcatcat gtacatgaat agctaggaaa
    10201 cgtttagtca cagcgagttg tggagctgca attccaacgc caccacgcaa cccatatttt
    10261 tctgctaact cttcatcttg actgttaatc aggaattcga gcatctcgcg tcctaatttt
    10321 ttttcttcat ctgaaagcgg gaaagtcact tctgtcgcaa cttctctaag tgctggatga
    10381 ccttctcgta caatatcgtc cattgtaagc atgatttgat tctctcctgt tctttaataa
    10441 cttatcttta ttttaacaaa agaacgaaaa aaaaggaatg aaagattact agactcgaaa
    10501 aaaagagtgt tttaataggt ctaaaggcat atttgttaaa aaagagaaag ttttaaaagc
    10561 gaacaataac aattattttt tttataatgt tcgtttaaac taaacaaaga aaaaaattat
    10621 atgtttgtga attcacaaac tatcgatatt tgctgtttga aagcttgaaa taggtgtggt
    10681 aatgcgagag ttgcaatatt atataacagt ttttatctgt ttcatctttt tttaatacag
    10741 aagtggaaag cgaatgattt aagtaataat gccattgtaa gcgataaaac aattagagat
    10801 taacttattg acttcataat cttggtagtg taaattaaga gagaagatta gtgtattaat
    10861 aaaattcttg tttttaagta aaacagaaat aacttttaac taaaaggaaa gttcctgatt
    10921 ttttatgaaa cattgtgaaa gaatgaatat tttttcacaa actctcttaa aacccatgtt
    10981 ttcaatgagg attttgtggt aataactgga gaggctacgt aattggttaa taggaattta
    11041 gaaaaaagct tccggaatct gcttctttct atagaatgac ttttcttttt actacgctat
    11101 tataattaat acacaatcag gatggcagtt ttaaaagaat ccatttagat gggtaaatga
    11161 ccggacgagc gttacataaa acgcatacct aactaatgaa gaatttgaaa ctgtacaatg
    11221 tgaatgacga aagggtggat acgaaatggc ttctaaaaca aagaaggcta ttatcgacgt
    11281 aaagaaacaa tttgaggctg ttcataaaca atttgaatta gttcaaattt tgaatgaaaa
    11341 aggagaaatc gttaatccag atttaatgcc ggatttaact gatgacgagt tagtagaatt
    11401 aatgactcgc atggtttgga ctcgtgtact tgaccaacgt tctatctcac ttaaccgtca
    11461 aggacgtcta ggtttctacg ctccaactgc tggacaagaa gcttcccaac ttgcaagcca
    11521 ctacgcactt gaaaaacatg actatattct tccgggttac cgtgatgtgc cacaacttat
    11581 ctggcacgga cttccactta caaaagcgtt cttgttctct cgtggacact ttgtaggtaa
    11641 ccaattccct gaagatttaa atgtattatc accacaaatc atcatcggtg cacaaatcgt
    11701 gcaagctgcc ggtgttgctc taggacttaa aaaacgtaaa aaagatgctg ttgtaatcac
    11761 ttatacaggt gatggtggtt cttcccaagg tgacttctat gaaggaatga actttgcagg
    11821 tgcttaccat gctccagcaa tcttcgtagt acaaaataac aaattcgcga tttctacacc
    11881 tcgtgaaaaa caatcagctg ctgaaacatt agctcaaaaa gcagttgcag ccggaatccc
    11941 aggcgtacaa gtagacggaa tggatccact tgcagtatat gctgtaacta aattcgctcg
    12001 tgaacgtgca gttgctggtg aaggcccaac attaatcgaa acaatgactt accgttatgg
    12061 tccacataca ctttctggtg atgatccaac tcgttaccgt acaaaagaac ttgacggaga
    12121 atgggaactt aaagacccaa tcgttcgctt ccgtactttc ttagaaggta aaggcctttg
    12181 gaacgaagaa aaagaaaatg ctgttatcga tcaagcaaaa gaagaaatca aagtagcaat
    12241 taaagaagca gatgctacac caaaacaaac tgtaactgat cttcttaaaa atatgtacga
    12301 aacaccaact gctcctatca aagagcaact ggcaatctat gaagcgaagg agtcgaaata
    12361 atcatggcgc aaaaaacaat gattcaagcg attacagatg cgcttgcagt agaacttgaa
    12421 aaagacgaaa acgtattagt ttttggggaa gacgttggta aaaacggcgg cgtattccgt
    12481 gcaacagaag gattacaaga aaaatttggc gaagatcgtg tattcgatac tcctctagca
    12541 gaatctggta tcggtggtct tgcgattggt cttgcacttg aaggtttccg tccagttcca
    12601 gaaattcaat tcttcggttt cgtatttgaa gtaatggatt ccgttgctgg tcaaatggct
    12661 cgtatgcgtt atcgtacagg cggaactcgt actgctccaa ttacaattcg cgcacctttt
    12721 ggtggtggag ttcatacacc agaaatgcat gcggataact tagaaggatt aatggctcaa
    12781 tcacctggtt taaaagtggt aattccatcc actccatatg atgcaaaagg tcttttaatc
    12841 tcagctattc gtgataacga tccagttatc ttcttagaac atatgaaatt ataccgttct
    12901 ttccgtgaag aagttccaga aggcgaatac acagtagaaa ttggtaaagc agctgttcgt
    12961 cgtgaaggta cggatgtttc tatcatcact tacggtgcaa tggtacaaga atcaatgaaa
    13021 gcagcagaag cgcttgaaaa agatggcgta tctgtagaag ttattgattt acgtacaatt
    13081 agcccaattg atgtggaaac aatcattgct tccgttaaga aaacaaaccg cgcagttgta
    13141 gttcaagaag cgcaaaaaca agcaggtatt gcagctaata tcgttgctga aatcaacgac
    13201 catgcaatcc tttctcttga agctccagtt atgcgtgttg ctgctccaga tagcgtattc
    13261 ccgttctctc aagcagaaac agtttggtta cctaaccaca acgatatcat cgaacgtgta
    13321 aaagaagtta ttgcatttta atttataatg accgttttaa aacttatggg gagttttaga
    13381 aggggaaaga aatattttta tactaaggtt cagtttatct gaaccttaga aattacagga
    13441 ggcttaataa aatggcatat tcatttaaat taccggatat cggtgaaggt atccatgaag
    13501 gtgaaatcgt taaatggttt gtacaaccag gcgataagat tgaagaagat gaatccctat
    13561 ttgaagtaca aaacgacaaa tcagtggaag aaatcacttc tccagtttca ggaacgatta
    13621 aagaaatcaa agttgcagaa ggtacagttg ctacagttgg acaagtacta gtaacatttg
    13681 atggcgtaga aggtcacgaa gacgacgccg aagaagaaag cgcagcacca aaagcagaat
    13741 ccacagaatc aactcctgca cccgcacaag ctagcggaaa aggaattttt gaattcaaat
    13801 taccagatat tggtgaagga attcatgaag gtgaaattgt taaatggttt attcaaccgg
    13861 gcgataaagt agaagaagat cagtccattt ttgaagtaca aaacgacaaa tctgtcgaag
    13921 aaattacttc tccagtagat ggaactgtta aagatatttt agttagcgaa ggaacagtag
    13981 caacagttgg tcaagtatta gtaacattcg aaggcgattt tgaaggagaa gctagtcatg
    14041 aatctactcc agaatctcca gcagaagaag ctgaacttac aaacaacgat gcaacttccg
    14101 ctccagttac aggtggaaac ggaacgccat catctaaaaa agatcctaat ggccttgtaa
    14161 ttgcaatgcc ttctgtacgt aaatatgcgc gtgaaaaagg cgttaatatc gctgaagtag
    14221 caggctctgg aaaaaataac cgcgtagtta aagctgatat tgatgctttc ctaaacggcg
    14281 aacaaccagc tgcatcaaca actactgctc aaacagaaga aaaagcagca gcaccaaagg
    14341 cagaaaaagc agcagcaaaa caaccagttg caagctccga tgcttaccca gaaacacgcg
    14401 aaaaattaac accaactcgt cgtgcgattg caaaagcaat ggtaaattca aaacatacag
    14461 ctccacacgt tactttaatg gacgaaatcg aagtaactgc acttatggct caccgcaaac
    14521 gtttcaaaga agtggctgcc gaaaaaggta tcaaactaac tttcttacct tatatggtga
    14581 aagctcttgt tgcaacgctt cgtgacttcc cagtgcttaa cacaacttta gatgatgcga
    14641 cagaagaact tgtttacaaa cattacttca acgttggtat cgcagcagat acagaccacg
    14701 gtttatatgt accagtaatt aaaaatgctg ataaaaaatc cgtattccaa atttctgatg
    14761 aaatcaacga actagctgga aaagcacgtg atggtaaatt aactgctgac gaaatgcgcc
    14821 acggttccgc aactatttct aatatcggtt ctgccggtgg acaatggttc actccagtaa
    14881 ttaattaccc agaagttgct atcctaggtg ttggtcgtat tgctcaaaaa cctatcgtaa
    14941 aagatggcga aattgtagca gcaccagtac ttgctctttc cttgagcttt gaccaccgtg
    15001 taattgacgg cgcaactgct caaaaagcaa tgaacaatat taaacgttta ttaaacgatc
    15061 cagaattatt actaatggag gtgtaacaaa atggtagtag gcgattttcc agaagaaaga
    15121 gacaccatag tcatcggtgc aggcccaggt gggtatgtag ccgcaatccg agctgcacaa
    15181 ctcggacaaa aagttaccat tattgaaaaa gaatattacg gcggtgtgtg cttaaacgtg
    15241 ggatgtattc cttccaaagc acttatcaca atcggtcacc gttttaaaga agctggacac
    15301 tctgataaca tgggtattac agcagacaac gtgaacttag atttcacaaa agcacaagaa
    15361 tggaaaggcg gcgtagttaa caagcttaca tcaggtgtta aaggccttct taagaaaaat
    15421 aaagttgaaa tgttagaagg agaagcgttc ttcgtggatg atcattcctt acgtgtgatt
    15481 caccctgact ccgctcaaac ttatacattt aacaacgtaa tcattgcaac aggatctcgt
    15541 ccaatcgaaa tcccaggttt caaatatggt aaacgtgtat taagctcaac tggtgcactt
    15601 gcactaacag aagttccgaa aaaattagtc gtaattggcg gcggatatat cggaacagaa
    15661 ctaggtggag cattcgctaa ccttggtaca gaactaacta tccttgaagg tggtccagaa
    15721 atcttaccaa catacgaaaa agacatggtt tccctagtta aacgtaatct gaaaagcaaa
    15781 aacgttgaaa tggttactaa agcacttgca aaatctgctg aagaaactga aaacggcgtt
    15841 aaagtaacgt atgaagctaa cggtgaaact aaaactatcg aagctgatta tgttttagtg
    15901 acagtaggtc gtcgcccaaa tacagacgaa atcggtttag aacaagctgg cgttaaagta
    15961 acagaacgcg gtttagtaga agttgacaaa caaggtcgct cgaacgttcc taacattttc
    16021 gcaattggtg acatcgttcc tggtgttcct ctagctcaca aagctagcta tgaagcaaaa
    16081 atcgctgctg aagcaattgc tggcgaaaaa gcagaaaacg attatacagc acttccagct
    16141 gttgttttca gtgacccaga acttgcaaca gttggtttaa cagaaaaaga agcaaaagaa
    16201 aaaggctttg atgtaaaagc tgctaaattc ccattcggcg gtaacggtcg tgcgctttct
    16261 ttagatgcac ctgaaggatt tgttcgtcta gttactcgta aagaagatgg cctagttatc
    16321 ggtgcacaag ttgccggaat gaacgcttct gatattattt cagaaatcgg cttagcaatc
    16381 gaatcaggta ttacagctga agacatcgcg cttactatcc atgctcatcc atcccttgga
    16441 gagcttacaa tggaagcagc tgaacttgct ttaggtcgtc caattcacat gtaatcaact
    16501 taaagcggag gtatccttta tggatatttc cgctttttat ctatataaat tagtgcgtga
    16561 tttcacaaaa actcttttag ttcatttttt gaaatattta aagtatccgt tttagaaaaa
    16621 aaggagtata atgtaacaag tgaatgtaac aagtcaaatc taattgaatc aggtgaaaaa
    16681 atggagaaac aaacagcaac ttggaagaaa gctctatttt ggtttgcgta tgtagtagca
    16741 ggaatttgtt ttttattaac gattgtggcc tttattgtag gatttattca tcacatgcat
    16801 gatacaggtg gatggcgttc cg
//
LOCUS       DABQVC010000044        16382 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.044,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000044 DABQVC010000000
VERSION     DABQVC010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16382)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16382)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16382
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.044"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            22..912
                     /gene="glyQ"
                     /locus_tag="IBJ56_001024"
     CDS             22..912
                     /gene="glyQ"
                     /locus_tag="IBJ56_001024"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HAM3417284.1"
                     /translation="MNLQTMIRTLQDYWSEQGCIMLQSYDVEKGAGTMSPYTFLKAIG
                     PEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGIN
                     PLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYG
                     VERLASYIQDKENVFDLEWTEGISYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYER
                     EATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFY
                     ESREKLGFPLVKEEGGKRHE"
     gene            905..2971
                     /locus_tag="IBJ56_001025"
     CDS             905..2971
                     /locus_tag="IBJ56_001025"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HAM3417285.1"
                     /translation="MSKDFLLEIGLEEMPAKYVTSSVLQLEKRVTDWLKDNQIEFKEI
                     KTYSTPRRLTVLVEEMAEEQANRVEEAKGPAKKIALDDEGNWSKAALGFAKSQKVAPE
                     DLTFREIKGVEYIYIKKEVIGEKTTALLPSLEKVVTSMTFPVSMHWGSNDLRYIRPIK
                     WLIAMFGEEIIPFEITGVSTSNTSRGHRFLGKTATINQPSDYPNALLEQFVVVNASER
                     KQAIVEQLRELETMENWQIREDDDLLEEVTNLVEYPTVLAGNFEKEYLELPEEVLITT
                     MKEHQRYFPVFSQEGELLPHFVTVRNGNHENLDTVARGNEKVLRARLSDADFFYQEDL
                     KITIDEAVAKLQNIVFHEKLGTLTEKMKRVQKVALMLADYLNWQEEDKQDIIRLTNIY
                     KFDLVTNIVGEFPELQGLMGEKYALLQGEKPAIATAIREHYLPSSAEGDLPQTDLGSL
                     IAIADKLETLIGFFCVNIAPTGSADPFGLRRSAFGAVRIIQANGWDIPMLEVVSRIVD
                     MERAEGATELPSSDVIKEVQTFLKNRLRVILQGHHIRHDIIDAVIGGNPNMIPQLIDR
                     AQILNKHADAEWFRPTIEALTRVVNISKKYEDGVEVDPSLFENEYEQALFDKLEKLKF
                     DFAGLKIVDRLKAFADLRTTIDAYFDNTLVMTDNDELKNNRLALLFELASFIKEFAQM
                     DEINVK"
     gene            3006..3830
                     /locus_tag="IBJ56_001026"
     CDS             3006..3830
                     /locus_tag="IBJ56_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HAM3417286.1"
                     /translation="MTQPAVYVVSDSTGETAELVTRAALSQFGQTPKFIHRFHHVDSS
                     HMIEEIVDLVAVNNGIIVHTIVLESVREELNKTAQAFGVPIIDLFGPLLNQLEETYKI
                     KPLSEPGRVRSMDEAYFNKVAAIEFAVENDDGRNPRGILQADYVLIGISRTSKTPLSQ
                     YLALKGLKIVNIPIVPEAQIPDELFEIDPKKIIGLKISKQKLTKIRQERLISIGLPGA
                     GTYASNQRIDEELAIFNKLASKLNCFVLDVTNKAIEETANEILIHIGEIVDENLEL"
     gene            4018..4458
                     /locus_tag="IBJ56_001027"
     CDS             4018..4458
                     /locus_tag="IBJ56_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HAM3417287.1"
                     /translation="MPKILVDADACPVKAEIKQVAEHFQLDVIFVASFNHYSVNTNGE
                     NWIFVDTGKESADMRMMNLAKKGDIIVTQDIGLASILLAKGTFVFSNRGELYREEEMS
                     LMLDIRYRHAKDRQQGKYSKGPKAMSDQDRSLFKDRLTTFLQNK"
     gene            4478..6358
                     /locus_tag="IBJ56_001028"
     CDS             4478..6358
                     /locus_tag="IBJ56_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAM3417288.1"
                     /translation="MARIPEEVIDQVRNQADIVDIIGNYVQLKKQGRNYSGLCPFHGE
                     KTPSFSVSPEKQMFHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPE
                     ERDTSNLPKETSETAKMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTF
                     QIGFAPNHHATITAFLEKRGMDLQLAGRAGLLSERDDGQMVDRFRNRIMFPITNDRGQ
                     IIAFSGRLFDRDDGPKYLNSPETPVFNKRRILFHFSEARQAIRKQEEITLMEGFMDVI
                     SAEEAGVQNAVASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERN
                     RLDVFVLQLPAGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQ
                     ISYIDDCLREIAKLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASY
                     NEPPIDDSFMGMMPQEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQL
                     LGDTTFYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVISPDEQ
                     GKTQFEDYIRSLKRFKLEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLNSGQ
                     LD"
     gene            6453..7577
                     /gene="rpoD"
                     /locus_tag="IBJ56_001029"
     CDS             6453..7577
                     /gene="rpoD"
                     /locus_tag="IBJ56_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HAM3417289.1"
                     /translation="MSDKTKNTKPVAELSVEQVKEALIEEGKKKGILTYAKIAARLAP
                     FTLDSDQMDEYLEHVGEAGIEVSDDADDEDPDETELVKEETESFDLTDMSVPPGVKIN
                     DPVRMYLKEIGRVDLLTADEEIALAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRG
                     MLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHM
                     VETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEE
                     DDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT
                     LEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE"
     gene            7645..8349
                     /locus_tag="IBJ56_001030"
     CDS             7645..8349
                     /locus_tag="IBJ56_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N(1))-methyltransferase"
                     /protein_id="HAM3417290.1"
                     /translation="MNEEQLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTAS
                     FAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLI
                     RTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIMVLA
                     PSEKPVTWTKQEIFFGPCLLKEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAK
                     IRELEHKIALVEDVLK"
     gene            8346..9467
                     /locus_tag="IBJ56_001031"
     CDS             8346..9467
                     /locus_tag="IBJ56_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HAM3417291.1"
                     /translation="MKVANGYEYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMF
                     TLDVLEEVVDEAIEKKVDLIIAHHPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAH
                     TNLDIAQGGVNDILADLLHLQETTMIEETYSEPYCKIAVYVPENELESIRLALVNNGA
                     GQIGTEYTECTFHTTGIGSFKPGANANPTIGEKEALTSVPEVKIEAIFPQYLTDTITK
                     AVKIAHPYEEPAIDVYTLEMQTYKEGLGRVGMLPKKLGMVSFIDKLKTAFAIDNVRFI
                     GDLKTTVHKVAIIGGDGNKFIHQAKATGADVFITGDVYYHTGHDLLAINLPTIDAGHN
                     IEKVMKGYLKNKMEEQAKILDYEAEFIVSEVNTDPFQFC"
     gene            complement(9513..10508)
                     /locus_tag="IBJ56_001032"
     CDS             complement(9513..10508)
                     /locus_tag="IBJ56_001032"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HAM3417292.1"
                     /translation="MEIIKISPRGYCYGVIDAMVIAKNASLDPNLPRPIHILGMIVHN
                     KHVTDAFESIGIYTVDGANREEILDKITTGTVIFTAHGVSPSVKAKAAAKGLTTIDAT
                     CPDVLHTYNLILEKQAAGYEIIYIGKKGHPEPEGAYGTAPDVVHLVETKADIDALSLL
                     SDNIFVTNQTTMSKWDVADLMDYIKEKFPKAIQHQEICMATQVRQEAVAVQAKGADLT
                     IVVGDPRSNNTARLAQVSIEKAGTKAYRIADITELDIEWIKDAKKVAVTAGASTPTQL
                     VREVLLFLEQFDAADKTTWKRAHNKDFERILPKMKNKYMAEKRRQRLAHLKNGGS"
     gene            10654..11961
                     /gene="cshB"
                     /locus_tag="IBJ56_001033"
     CDS             10654..11961
                     /gene="cshB"
                     /locus_tag="IBJ56_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD-box ATP-dependent RNA helicase CshB"
                     /protein_id="HAM3417293.1"
                     /translation="MTKKSRFDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGES
                     IIGQSQTGTGKTHTFILPIINNVNPEKEAVQAVITAPSRELATQIYNEIRKVTKYSEK
                     EIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADM
                     TLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASK
                     TVEHRIMATRSRNKLDLLKNVLVGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIH
                     GDVNPRERKRTMKQIENLDYQYVVATDLAARGIDIQGISHVVNYELPDDLDFYIHRTG
                     RTGRAGHSGIALTLFEPADEDRLNQLEKMGIEFKHVDWKNKEFVTLEDRNRRAKREAK
                     RETADPREIGMRKKAKQKGKPNYKKKINYKMNEIKRRERRKKR"
     gene            11977..12870
                     /locus_tag="IBJ56_001034"
     CDS             11977..12870
                     /locus_tag="IBJ56_001034"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HAM3417294.1"
                     /translation="MLRLGSHVSMSGKKMLLGASEEAASYGSNTFMIYTGAPQNTRRK
                     PIEELNIEAGLEHMKAHDMADIVVHAPYIINIGNSVKPETFELGVNFLQSEIERTRAL
                     GAKQIVLHPGAHVGEGADKGIKQIIQGLNEALIHDQDVQIALETMAGKGSECGRTFEE
                     IAQIIDGVTHNELLSVTFDTCHTHDAGYDIVNDFDGVLNEFDKIIGVDRLKVLHINDS
                     KNERGAHKDRHANIGFGHIGFDALHYIVHHPQLADVPKILETPYVGEDKASKKAPYKW
                     EIAMLRNGEFDPDLLNKIQNS"
     gene            12887..13813
                     /locus_tag="IBJ56_001035"
     CDS             12887..13813
                     /locus_tag="IBJ56_001035"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HAM3417295.1"
                     /translation="MTKTLVFGHKNPDTDTICSAISYAELKKAQGADIEAVRLGELNS
                     ETAFVLDYFQVTAPRLVQTVANEVSEVALVDHNERQQSVDDIDDVTVTAVVDHHRIAN
                     FETSDPLYYRAEPVGCTTTILLKMFRENEVEVSKTVAGLMLSAIISDTLLFQSPTCTQ
                     EDKVAAQKLAQIADVDIQSYGMEMLKAGADVSKKTVAELLLDAKEFNMNDNKVEIAQI
                     NVVDVNDVLSRRAEVEALMTQNIVDKGLDLYLFVITNILTNDSVGIAIGSKTAVVEEA
                     YGVKFVENQAPLKGVVSRKKQVVPILTDTFAK"
     gene            13958..14731
                     /locus_tag="IBJ56_001036"
     CDS             13958..14731
                     /locus_tag="IBJ56_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HAM3417296.1"
                     /translation="MNKIIEVNNVSYHYDKEHALENIHFQVAKGSFTGLIGPNGSGKS
                     TMLKLILGVLKKQQGSISLFGEKQADFKDWVKIGFVSQKSNAFNSAFPATVKEVVASG
                     LTKKKGLFKTLNNKDKEDIDYALKRVEMTDYLHRNIGELSGGQQQRVFIARALVSRPE
                     LLILDEPTVGVDVENVKAFYELLAELNRTEEMTLLLVTHDLMAVNTYVNHVISINKRI
                     IFDGSAHEYQHYLADRELEILAEQRRREDACLDCDASPV"
     gene            14706..15584
                     /locus_tag="IBJ56_001037"
     CDS             14706..15584
                     /locus_tag="IBJ56_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HAM3417297.1"
                     /translation="MIATLLQYDFIRNTFIVGLVIGIVAPLLGSFIVVRKLSLMADAL
                     SHVTLGGIAVSLFLSKTYLPLAALNPLYLGFGFSVVGSLLMEKLRNVYKHFEELAIPI
                     IMSAGMGFSVIFISLANGFNTDLFSYLFGSVSAVSRTDMITIVVTAIIVFIVILSLYK
                     ELFLLSFDEEYAKVSGLKAKVFDVIFMVLVALVIASSMRIVGILLVSSLMTLPVAAAI
                     RIAKGFKQTILLSILFGEIAVIGGLFTAYYLNLAPGGAIVIISVLLLIVTILYQKIRQ
                     KILISKRGEENGTYSN"
     gene            15565..15990
                     /gene="zurR"
                     /locus_tag="IBJ56_001038"
     CDS             15565..15990
                     /gene="zurR"
                     /locus_tag="IBJ56_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ZurR"
                     /protein_id="HAM3417298.1"
                     /translation="MGLTATEALMKMKEKGYKHTDKREFLINLLARKNKYLTAKDVLE
                     NMKDDFPGISFDTIYRNLSLFVELGIFEETDLSGERNFRLACTHEHHHHHFICMKCGK
                     TKEIMMCPMDFLTEALPGYQIDGHKFEVYGECPECLQAS"
     gene            16125..>16382
                     /locus_tag="IBJ56_001039"
     CDS             16125..>16382
                     /locus_tag="IBJ56_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PrsA"
                     /protein_id="HAM3417299.1"
                     /translation="MTKLKKVMISVIAATLLLLAGCGSSAVVKTDAGSVTQDELYEAM
                     KTTYGNEVVQQLTFKKILEDKYTVTEKEVNAEYKKYEEQYGD"
BASE COUNT         5565 a         2838 c         3268 g         4711 t
ORIGIN      
        1 ttatttttgg aggtggaagc aatgaattta caaacaatga ttagaacatt acaagattat
       61 tggtccgaac aaggttgtat tatgttgcaa tcgtatgatg tggaaaaagg tgctggcaca
      121 atgagtccgt atactttctt aaaagcaatt ggtccagagc cgtggaaagc gggttacgta
      181 gagccgtcgc gtcgtcctgc tgatggtcgt tacggagaaa atccaaacag attattccaa
      241 catcaccaat ttcaagtagt gatgaagcct tctcctgaca atattcaaga gctttaccta
      301 ggttctttag aaaaattagg tatcaatccg ttagaacatg atatccgttt tgtagaggat
      361 aactgggaga atccatctct tggttgtgcg ggccttggtt gggaagtatg gttagatgga
      421 atggaaatca cacaattcac ttatttccaa caagtaggtg gcttagaatg tttccctgtt
      481 acttccgaaa tcacttacgg tgtggaacgt ttagcaagct atattcaaga taaagagaat
      541 gtatttgatt tagaatggac agaaggtatt agctaccgtg atattttctt ccaagcagaa
      601 ttcgaaaact cgacatatgc ttttgaaact tcgaatacag atatgctgtt gacacttttt
      661 gacacatatg aaagagaagc cactcgccaa atgcaagacg gccttgtttt cccagcatat
      721 gattacgtat tgaaatgttc gcatacgttt aacttactag atgctcgcgg cgttgtttca
      781 gtaactgaac gcgcacagta tatcggtcgt atcagaaact tagcaagacg tatcgccaaa
      841 acattttatg aatcacgaga aaaacttggc ttcccattag tcaaagaaga gggaggaaaa
      901 cgtcatgagt aaagactttt tattagaaat tggtttagaa gaaatgccag caaaatatgt
      961 gactagctct gtactacaac tggaaaaacg agtaactgat tggttaaaag acaaccaaat
     1021 cgaatttaaa gaaattaaaa cttattctac accaagacgt ttaactgtcc tagtagaaga
     1081 aatggctgaa gaacaagcta atcgtgtgga agaagcaaaa ggccctgcaa aaaaaatcgc
     1141 tctagacgac gaaggcaact ggtcaaaagc agcattaggg tttgcaaaaa gtcaaaaagt
     1201 tgcgccagaa gatttaactt tccgcgaaat taaaggtgtt gaatatattt atattaaaaa
     1261 agaagtaatc ggcgaaaaaa caacggcgtt acttccaagc ttagaaaaag tagtaacaag
     1321 tatgactttc ccagtaagta tgcactgggg tagtaatgat ttacgttata ttcgtccaat
     1381 caaatggctt atcgcaatgt ttggcgaaga aattattcca tttgaaatca ctggtgtctc
     1441 aactagtaat acatcccgtg gacatcgttt cttaggaaaa acagctacaa tcaaccaacc
     1501 gagcgactat ccaaatgcat tattagaaca atttgtcgtt gttaatgcta gtgaacgcaa
     1561 acaggctatt gtagaacaat tacgtgaact agaaacgatg gaaaattggc aaatcagaga
     1621 agatgacgac ttattagaag aagtaactaa tcttgtcgaa tatccaactg tactagcagg
     1681 taattttgaa aaagaatatc tggaactacc cgaagaagtt ttaattacga cgatgaaaga
     1741 acaccaacgt tacttcccag ttttcagcca agaaggagaa ttgttgcctc attttgtaac
     1801 cgttcgtaat ggtaaccatg aaaatctaga tacagtggca cgaggaaacg aaaaagtact
     1861 acgcgctcgt ttgtcagatg ctgatttctt ctatcaagaa gatttaaaaa taaccattga
     1921 tgaagcagtt gctaaattac aaaatatcgt tttccatgaa aaattaggca ctttgacaga
     1981 aaaaatgaaa cgagtgcaaa aagtggcatt aatgcttgct gattatttaa attggcaaga
     2041 agaagataaa caagatatta tccgcttaac aaatatttat aaatttgatt tagtaaccaa
     2101 tatcgttggt gaattccctg aactacaagg tttaatgggc gaaaaatatg cattgttgca
     2161 aggcgaaaaa ccagcaatcg caacagctat tcgtgaacat tatttaccaa gctcagcaga
     2221 aggcgattta ccacaaacag acttaggttc acttatcgct attgcagata aattagaaac
     2281 attaattggc ttcttctgtg taaatattgc accaacaggc tctgctgatc catttggttt
     2341 acgtcgtagt gcttttggag cggtgcgtat tatccaagca aatggttggg acattccaat
     2401 gcttgaagtg gtttctcgta ttgtggatat ggagcgtgca gaaggggcta cagaactacc
     2461 aagttcagat gtaataaaag aagtgcagac tttcctaaaa aatcgtttgc gtgttatttt
     2521 acaaggccat catattcgcc atgatattat tgacgctgtt atcggcggca atcctaatat
     2581 gattcctcaa ttgattgatc gtgctcaaat attgaataag catgcggacg cagagtggtt
     2641 ccgcccaact atcgaagcct taacacgagt agttaatatt tctaaaaaat acgaagatgg
     2701 cgtagaagtg gatccgagcc tatttgaaaa tgaatacgag caagccctat ttgataaatt
     2761 agaaaaacta aaatttgatt ttgctggttt aaaaattgtt gacagactaa aagcatttgc
     2821 agatttacgt acaacaattg atgcatattt cgataacacg ctagttatga ctgataatga
     2881 tgaattgaaa aataatcgtc ttgcactatt attcgaactt gcaagcttta ttaaagagtt
     2941 tgctcaaatg gatgaaatta atgtaaaata aaaggaagat tttgagcaaa gaggaggaag
     3001 tatgtatgac tcaaccagcc gtatacgtgg tttccgattc aacaggagaa acggccgaac
     3061 tagtgacaag agcagcacta agtcaatttg gtcaaacacc gaaatttatc catcgttttc
     3121 accacgtcga ttcttctcat atgattgaag aaattgttga cttagtggca gtgaacaatg
     3181 gcataatcgt gcacaccatt gtactcgaaa gcgtccgtga agagcttaat aaaactgctc
     3241 aagctttcgg cgtaccgata attgacttat ttgggccgct tttaaatcag ttagaagaaa
     3301 cctacaaaat caaaccactt tctgaacctg gccgcgttcg ttctatggat gaagcttatt
     3361 tcaataaagt agccgcaatc gaatttgccg tagagaatga cgacgggcgt aatccaagag
     3421 gtattttaca agcggattat gttttaatcg gtatttcaag aacttcaaaa actcctttat
     3481 cgcaatattt ggcgcttaaa ggattaaaaa tcgtcaatat tccaatcgtt ccagaagcac
     3541 aaatcccaga tgaacttttt gaaattgacc ctaaaaaaat aattggtcta aaaattagca
     3601 aacaaaaatt aacgaagatt agacaagagc gtttaatatc gattggttta cctggtgccg
     3661 gtacttatgc aagtaatcaa cgaattgatg aagaattagc gatttttaat aaactagcca
     3721 gtaaattaaa ttgtttcgtg ttagacgtga ctaataaagc cattgaagag actgcaaacg
     3781 agattttaat ccatattggt gaaattgttg atgaaaattt agaattataa gaaggacttt
     3841 tactttttat ggcgaatata tatattatac ggggaaaact gcttgtaaaa attagttact
     3901 tcccgtataa tctaaattcg cgtgtgaaaa agccaaatct acgaataata ttaaaaaaac
     3961 gggttaaaaa ctcgtttttt aacttgcctt catagatttt aagagaggat ggaatatgtg
     4021 ccaaaaattt tagttgatgc cgatgcttgc ccggtaaaag cagaaataaa acaagtcgcc
     4081 gaacattttc agttagacgt tatttttgtg gcttctttta accattactc tgtaaataca
     4141 aacggagaaa attggatttt tgtggatact ggaaaagaat cagcggatat gcgaatgatg
     4201 aatttagcca aaaaaggcga tattatcgta acacaagata ttggcctagc tagtattcta
     4261 cttgcaaagg gtacatttgt cttttctaat cgcggcgaac tttaccgaga agaagaaatg
     4321 tcattaatgt tagatattcg ctatagacat gccaaggaca ggcaacaagg taaatatagc
     4381 aaaggtccaa aagcaatgag cgatcaagat cgttctcttt tcaaagaccg attgacgaca
     4441 tttttgcaaa ataagtaaat aggagttgac tgtcaaaatg gcgcggattc ctgaagaagt
     4501 aattgatcaa gtccggaatc aagcggatat agtcgatatt atcggtaatt atgttcagtt
     4561 aaaaaaacaa ggacgtaatt attctggctt atgtcctttc cacggtgaaa aaacgccatc
     4621 cttttctgtc tcaccagaaa aacagatgtt ccattgtttt ggttgtggta agggagggaa
     4681 tgttttttct tttctaatgg agcatgacgg actcactttt gttgaatcgg taaaaaaagt
     4741 ggcagacatg agtcatttag atgtggctat cgagctccct gaagaacgag atacaagtaa
     4801 tttgccaaaa gaaacttctg aaacagcaaa aatggtggaa atgcaccagc ttactgccaa
     4861 actttaccat tatattttaa tggaaactga agaaggtaca gcagcattaa cttatttaaa
     4921 agagcgtggt atgtctgaac agatgatgac cactttccaa attggttttg cccctaatca
     4981 ccatgcaaca attactgctt ttctagaaaa acgtggcatg gatttacaat tagctggcag
     5041 ggctggactt ttgtccgaac gtgatgatgg gcaaatggtg gatcgttttc gtaatcggat
     5101 tatgtttcca attacgaatg atcgtggaca aattattgcc ttttctggcc gcttatttga
     5161 tcgtgatgat ggtcctaagt atttaaatag ccctgaaaca cctgttttca ataaaagacg
     5221 aatattgttt catttttcag aagcaagaca agctattaga aaacaagaag aaattacgct
     5281 catggaagga tttatggatg ttatttccgc agaagaagca ggtgttcaaa atgcggtagc
     5341 ttcgatgggg acaagcttaa cggaagaaca tgcagattta attaaacggc ttactaaccg
     5401 ggcgattatt tgttatgacg gtgacagagc cggaattgaa gcagcctata aggcgggcac
     5461 acttctagtt gaacggaatc gtttagatgt ttttgttttg caacttccag ctggaaaaga
     5521 tcccgatgac tttattcgag caagtggtcc agaaaaattc aaagaagttt ataagcaaca
     5581 acgaatgact tggacagctt ttaaaattca ttatttacgt agagaacgta atttacagaa
     5641 tgagacagat caaattagtt atattgatga ttgtttacgc gaaattgcga aactagatca
     5701 agccgtcgaa cgcgaattat acttaaaaca actagcagat gaatttgaat taacgataga
     5761 aacattaaaa caacaactac agcaatcact aaaaaatagt cagaaatcac gacaaatggc
     5821 tagttataat gaaccaccaa tagatgattc ttttatggga atgatgcctc aagaagaaac
     5881 agaaatgcta ttttctttcg agcaaccaac ccaaaaacta tctgcccata caacctcaga
     5941 gcaacaactc atgaaagcaa tgatggagag ccgagataat tttcttttaa ttaagcaact
     6001 tcttggtgac actacgtttt atcatgataa ttacaaagcg ctttatacct atctaattgg
     6061 ttattttgca gaaggtaatg atgcagatcc aacgaaattt atggatagtg ttcctgatgc
     6121 tacaatgaaa ggacttatca gtagcctcga aatggttatt agtccagatg aacaaggtaa
     6181 aacacagttt gaagactata ttagaagtct aaagcggttt aaattagaac aaaagaaaaa
     6241 agaacttgag caagagctag caactttaaa tcgtgaaaat gacaaagata acgaaattcg
     6301 tgtcatgctc gaaatcgtcc aactcaaccg tcagttaaac agcggccaat tggattaata
     6361 acgttttaaa accgctaaat gatggtatta ttacctaaga gaagcctttt aataaggtta
     6421 gcggcatttt ggaaggagga atacaggcag ttatgagtga taaaacaaaa aacacaaaac
     6481 cagttgctga actaagtgtt gagcaagtaa aagaagccct gatagaagaa ggtaagaaaa
     6541 aggggatttt aacttatgca aaaatcgctg ccagattagc tccattcact ttggattccg
     6601 atcaaatgga tgagtattta gaacatgttg gtgaagcagg aattgaagtt tctgacgatg
     6661 cagatgatga ggatccggat gaaacagaac ttgtaaaaga agaaaccgaa tcctttgatt
     6721 taacagatat gagtgtacca ccaggcgtaa aaattaatga ccctgttcgc atgtatctga
     6781 aagaaattgg tcgagtagac ttacttacag cggatgaaga aattgcctta gcaaaacgta
     6841 tcgaagctgg cgacattgaa gccaaaggac gtcttgcaga agccaacctg cgccttgttg
     6901 taagtattgc aaaacgttat gttggtcgcg gtatgttatt ccttgattta attcaagaag
     6961 gtaacatggg actaatgaaa gccgttgaga aattcgactt caataaagga tttaaattca
     7021 gtacctatgc aacgtggtgg attcgtcaag cgataacccg tgcgattgcg gaccaagcta
     7081 gaactatccg tattccggtg catatggttg aaacaatcaa caaactaatc cgtgtacaac
     7141 gttccttatt gcaagactta ggtcgtgatc cttcaccaga agaaattggt gaagaaatgg
     7201 acttaccaac tgaaaaagtt cgggaaatcc ttaaaatcgc acaagagcca gtttcccttg
     7261 aaacaccaat tggtgaagaa gacgattcac atctaggcga ttttatcgaa gaccaagatg
     7321 caacttcacc atccgatcac gcagcatacg aattactaaa agaacaatta gaagatgtgc
     7381 ttgatacatt aactgaccgt gaagaaaatg tacttcgctt acgttttggt ctagatgatg
     7441 gtcgtacgcg cactttagaa gaagttggtc gtgtatttgg tgtaactcgt gaacggattc
     7501 gtcaaattga agccaaagct ttacgtaaat tacgtcatcc gagccgcagc aaacaactaa
     7561 aagacttcct ggaataaagc acaaccgggc aggaggacaa accgttctcc tgccttttta
     7621 atgaaaatga aagtagggaa ccaaatgaac gaagagcaat tatcgaagcg actcgaaaaa
     7681 gtggcttctt acataacaaa aaatgaacga atcgcagaca tcggaagcga tcatgcttat
     7741 ttaccttgtt ttgcagttaa aaatcaaacg gcttcgttcg ctattgctgg cgaagtagtt
     7801 gatggacctt ttcaatctgc acaaaaacaa gttcgttctt ctggcttaac agaacaaatt
     7861 gacgttagaa aagggaacgg tttagctgtt atcgaaaaaa aggatgcgat tgatacaatt
     7921 gtgattgcag gcatgggtgg cacgttgata cgtactattt tagaggaagg tgcagcaaaa
     7981 ttagccggtg taaccaaact aattttacaa cctaatattg cagcctggca attaagagag
     8041 tggtccgaac aaaacaattg gcttattact tctgaagcaa ttttacgcga agataataaa
     8101 gtttatgaaa tcatggtgtt agctccgtct gaaaaaccag ttacttggac taagcaagaa
     8161 atatttttcg gaccatgctt attaaaagaa caaagcgcca ttttcaaaag caagtggcgc
     8221 catgaagcaa atacatggca aaatattatt cagactattt ctaacaacca accagtttca
     8281 acagaaaacc aagcgaaaat tcgtgaatta gaacataaaa tcgcattagt agaggatgtg
     8341 ctaaaatgaa agtcgcaaat ggctatgaat acacagcaat aatggaaaaa atcgcaccca
     8401 aaaaacttgc aatggaaggc gatcctattg gtttgcaagt aggagattta tcgagaaaag
     8461 taagaaaaat catgtttacc ttagatgtat tggaagaagt tgttgatgaa gctattgaga
     8521 aaaaagttga tttaattatt gctcaccatc cgtttctata tcggccaacg caacatatcg
     8581 atacgacaac taaacaagga aaaatgatta aaaaattaat caaacatgat attactgtat
     8641 ttgccgcaca cacaaaccta gatattgctc aaggtggtgt aaacgatatt ttagcagatt
     8701 tactccattt acaagaaaca acgatgattg aggaaaccta ttcagaacca tattgcaaaa
     8761 ttgctgttta tgttccagag aatgaattag aaagcattcg tttagctctt gtaaataatg
     8821 gtgccggaca aatagggaca gaatatacag aatgcacatt ccacacgacc gggattggtt
     8881 ctttcaaacc aggagcaaac gctaacccaa ctatcggcga aaaagaagca ctgacttctg
     8941 ttcctgaagt taaaatagaa gctatattcc cacagtattt aaccgatact atcactaaag
     9001 cagttaaaat tgctcatcca tatgaagaac ctgcgattga tgtatatacg cttgaaatgc
     9061 agacttataa agaaggatta ggtcgtgttg gaatgcttcc aaaaaaactc ggcatggttt
     9121 catttattga taaattaaaa actgctttcg ctattgataa tgtccgtttt attggggatt
     9181 taaaaacaac agtccataaa gtagcaatca ttggtggcga tggaaataaa tttatccatc
     9241 aagcaaaagc cactggtgca gatgttttta ttaccggtga tgtttattat cacacgggac
     9301 atgatttatt agctattaat cttccaacta ttgatgctgg ccataatatc gaaaaagtga
     9361 tgaaaggcta tcttaaaaat aaaatggaag aacaagcaaa aattttggat tatgaagcag
     9421 aatttattgt atcagaagta aatacagatc cattccaatt ttgttgataa aaaaaccgag
     9481 taactccctt aaacaaagga gttgctcggt ttttagcttc cgccattttt taagtgagct
     9541 agccgttgac gtcttttttc agccatgtac ttattcttca ttttgggaag aatacgctca
     9601 aagtccttat tatgcgcacg tttccaagta gttttatctg ccgcatcaaa ctgctccaaa
     9661 aacaatagca cttcacgaac aagttgtgtt ggcgtacttg ctccggctgt aactgctact
     9721 ttttttgcgt ctttgatcca ctctatatct aattccgtaa tatcggcaat tcggtacgcc
     9781 tttgtgccag ctttctctat cgaaacttgg gctaaacgag cagtattatt acttctagga
     9841 tcgccgacaa caatagtgag atcagcacct ttggcttgta ctgcgacagc ttcttgccgc
     9901 acttgagtgg ccatacatat ttcttgatgt tgaatagctt tcgggaattt ttcttttata
     9961 taatccatta aatcagcgac atcccatttg ctcatcgttg tttggttcgt cacaaaaatg
    10021 ttatcggaaa gtaatgaaag agcatcaatg tctgcttttg tttctactag gtgaacaaca
    10081 tcaggcgctg ttccgtatgc gccttctggt tcaggatgtc ctttttttcc tatataaata
    10141 atttcatagc cagccgcttg tttttctaaa attaaattat aggtatgaag tacatctggg
    10201 caggttgcgt cgattgtcgt taagcctttt gctgctgcct tcgctttgac agaaggagag
    10261 acaccatgtg cggtaaatat aaccgttcca gtggttattt tatctaaaat ttcttctcga
    10321 ttagcgccat ctactgtata aataccaatg gattcaaatg catcagtaac atgtttatta
    10381 tgaacaatca tacctaaaat atgaattggt cgaggcaagt tcggatcaag tgatgcattt
    10441 ttagcaatca ccatcgcatc gatgactccg tagcaataac cacgaggaga tattttgata
    10501 atttccattc gaaaacatcc tcatttctgt tttagattct ttatttagta taatagactt
    10561 agcctgtttt gacaaagttg tcttaacacg cgcacgaatg tccaattatg tgctataatg
    10621 gctactaggt atagaacgga gtggaaatat tttatgacga agaaatcaag gtttgaccaa
    10681 tttggctttc aaccttttat tggacttgca atagataaat taggattcta tgagccaaca
    10741 gaagtacaac agaagctaat tccaggcatt ttaaaagggg aaagtatcat tggccaatct
    10801 caaacaggta cagggaaaac ccatactttt attttgccaa ttattaacaa tgtgaatcct
    10861 gaaaaagagg cagtacaagc agttattacg gcaccaagtc gtgagcttgc tactcaaatt
    10921 tataatgaaa ttcgcaaagt aaccaaatac agtgaaaaag aaatcgctgt acaacttgtt
    10981 attggtggca cagacaaaca acgtgcgatt gataaactga aaaagcaacc acaaatcatt
    11041 gtcggaacgc ctggtcgtat caatgactta attcgtgagc aagcgttatt tgttcatact
    11101 gcgaaaacgc tcgttattga cgaagcagat atgacacttg atatgggctt cttaaacgat
    11161 gtcgaccata ttgctggaaa aatgccggct aatttacaaa tgcttgtttt ttccgctaca
    11221 attccgcaaa aattaaaacc atttttaagc aaatatatgg aaaatccacg ttatgagcat
    11281 attcagccaa aagtggctgc ttcaaaaaca gtggaacatc gcattatggc cactcgtagc
    11341 cgtaataaac ttgatttact taaaaatgtt ttagttggtt cacagcctta tttagcgatt
    11401 gtttttacta atacaaaaac aacagctgat gaagtagcaa acggtttaat cgaacgtggg
    11461 ctaaaagtag cgaaaatcca tggtgatgta aaccctcgtg aacgtaaacg gacgatgaaa
    11521 caaatcgaaa acttagatta tcaatatgtt gttgcgacag atttagctgc tcgtggtatt
    11581 gatattcaag gaattagtca tgtcgtgaac tatgagttgc ccgatgactt agatttctac
    11641 attcaccgta ctggtcgtac tggtcgtgcc ggacattctg gtattgcact tacattattt
    11701 gaaccagctg atgaagaccg cttaaaccaa ttagaaaaaa tgggaatcga atttaagcac
    11761 gttgactgga aaaataaaga atttgttaca cttgaagacc gcaaccgccg tgccaaacgt
    11821 gaagcgaaac gcgaaacagc tgaccctcgt gaaatcggta tgcgtaaaaa agcaaaacaa
    11881 aaaggtaaac caaactataa aaagaaaatt aactacaaaa tgaacgaaat caaacgtcgt
    11941 gaaagacgga aaaaacgata agtgaggaat gaatttatgc taagattagg ttctcatgta
    12001 tcaatgagtg gtaagaaaat gcttcttggc gcaagtgaag aggcagcttc ttatggctca
    12061 aatacgttta tgatttatac tggcgctccg caaaacacgc gtagaaagcc aattgaagaa
    12121 ttaaatattg aagccggctt agaacacatg aaagcacatg atatggctga catcgtcgtt
    12181 cacgcgccgt atatcatcaa tattggcaat tcagtgaagc cagaaacctt tgaactaggt
    12241 gttaatttct tgcaatctga aattgaacgt acgcgtgcgc ttggtgccaa gcaaatcgta
    12301 cttcatcctg gcgctcatgt tggcgaaggg gcagacaaag ggattaaaca aattatccaa
    12361 ggtcttaacg aagcattaat acatgatcaa gatgtacaaa ttgctttaga aacaatggct
    12421 ggaaaaggtt ctgaatgcgg acgtactttt gaagaaattg ctcaaattat tgatggcgta
    12481 acgcataatg aattattatc cgttactttc gatacttgtc acacacatga tgctggttac
    12541 gatattgtaa atgattttga cggggtgtta aatgaattcg ataaaattat cggtgttgat
    12601 cgcttaaaag tgttacatat caatgatagc aagaacgaac gtggtgcaca taaagaccga
    12661 cacgctaaca ttggtttcgg tcacattggc tttgacgcac ttcattatat tgtgcatcat
    12721 ccgcaattag cggacgtccc gaaaatcctt gaaacacctt atgttggtga agataaggca
    12781 tcgaaaaaag caccatataa atgggaaatc gcgatgttaa gaaatggcga atttgaccca
    12841 gatttattaa ataaaatcca aaatagttaa aaaggagacg aaaataatga caaaaacact
    12901 tgtattcggt cataaaaatc cagatacaga tacgatttgt tctgccatta gttacgcaga
    12961 attaaaaaaa gcacaaggag cagatattga agcggttcgt ttaggagagc ttaatagtga
    13021 aacagctttt gttcttgatt atttccaagt aacagctcca cgcctagttc aaacagttgc
    13081 aaatgaagtt tctgaagttg cacttgttga tcataatgaa cgccaacaaa gcgtagacga
    13141 tattgacgat gtaacagtta cagctgtagt tgaccatcac cgtatcgcaa acttcgaaac
    13201 atctgaccca ctttattacc gtgctgaacc agttggatgt acaacaacaa ttcttctaaa
    13261 aatgttccgc gaaaatgaag tagaagtaag taaaacagtt gcaggtctaa tgctttccgc
    13321 aattatttca gacacacttc tttttcaatc gccaacgtgc acgcaagaag acaaagtagc
    13381 tgctcaaaaa ttggcgcaga ttgcagatgt tgatattcaa tcgtacggca tggaaatgct
    13441 aaaagcagga gcagatgtta gcaaaaaaac agtagctgaa ctcctacttg atgcgaaaga
    13501 atttaacatg aacgataaca aagtagaaat tgctcaaatc aatgtagtgg acgtaaacga
    13561 tgtgcttagc cgtcgcgcag aagtggaagc acttatgacg caaaatattg tggataaagg
    13621 gcttgattta tatctattcg tcatcactaa tatccttact aatgactctg ttggaatcgc
    13681 tattggttca aaaacagcag tcgtagaaga agcatacggt gttaaatttg ttgaaaacca
    13741 agcaccactt aaaggcgttg tatctcgtaa aaaacaagtt gttccaattt taacggacac
    13801 atttgctaaa taattatatt aacctggaaa agctaagcaa cttttccagg ttttcttgtc
    13861 taatttttta attcgaagta attacgattt acattttctc tattatttta tatactagta
    13921 aaagcggcta gcaaatgctg tcaaaggaga aacatgaatg aacaaaatca tagaagtaaa
    13981 taatgtaagc tatcattatg ataaagaaca tgccttagaa aacattcatt ttcaagttgc
    14041 aaaaggcagt tttactggtt taattggccc taatggttca ggtaaatcaa ctatgttaaa
    14101 gctaattctt ggtgtactca aaaaacaaca aggaagcatc tccttatttg gagaaaaaca
    14161 agcagatttc aaagactggg tcaaaatcgg cttcgtttct caaaaatcga acgcctttaa
    14221 ctccgcattc ccagccactg tgaaagaagt tgtcgcaagc ggattaacaa agaaaaaagg
    14281 cttatttaaa acattaaaca ataaagataa agaagacatc gattacgctt taaagcgagt
    14341 agaaatgaca gattatctgc atcgcaacat cggggagctc tctggtggcc aacagcaacg
    14401 cgtttttatt gcacgtgcgc tagttagcag accagaactt ttaattctag atgagccaac
    14461 cgttggagtg gatgtcgaaa atgtcaaagc tttttatgaa cttttggccg aattaaaccg
    14521 gacagaagaa atgacacttt tactcgtgac acatgatttg atggcagtga atacgtatgt
    14581 caatcatgtt attagcatta ataagcgtat tatttttgac ggttccgcac atgaatatca
    14641 acattatttg gctgaccgcg aacttgaaat attagcagaa cagcgtagaa gggaggatgc
    14701 ttgccttgat tgcgacgctt ctccagtatg attttattcg taatacattt attgtaggac
    14761 ttgtgatcgg tattgtagct ccattacttg gaagttttat cgttgttaga aaactttctt
    14821 taatggcaga tgcactgagt catgtgacgc ttggtgggat tgcagtaagt ttatttttaa
    14881 gtaaaactta tttaccatta gctgccctta atccgttata tcttggcttt ggtttttccg
    14941 ttgtaggatc tttattaatg gaaaaacttc gcaacgtcta taagcatttt gaggaactag
    15001 caattccaat tattatgtcg gctggtatgg gtttctctgt tatttttatt tccttagcaa
    15061 atggctttaa tacagatttg tttagttatt tatttgggag tgttagtgct gttagccgca
    15121 cggatatgat tacaattgtc gttactgcga ttattgtatt tatcgttatt ttatctttat
    15181 ataaagaact atttctgtta tcatttgatg aagaatatgc caaagtttca ggtctaaaag
    15241 ccaaagtatt cgatgttata tttatggtat tagtcgctct tgtaatagcg tcttctatgc
    15301 gaatcgttgg tattttactt gtttcgtctt taatgacatt gcctgttgca gcagctattc
    15361 gtattgctaa aggatttaaa caaaccattt tattatcgat tttatttggt gaaattgccg
    15421 ttatcggtgg tctgtttacc gcttattact tgaatttagc gccgggtgga gccatcgtta
    15481 ttatatccgt gctactttta atcgtcacca ttttatatca aaaaatacgt caaaaaatct
    15541 taatttcaaa acgaggtgag gaaaatggga cttacagcaa ctgaagcact catgaaaatg
    15601 aaggaaaaag gctataaaca cacagataaa cgtgaatttc taattaactt actagcgagg
    15661 aaaaataaat atttgacggc aaaagatgtc ttagaaaata tgaaagatga tttcccggga
    15721 ataagttttg atactattta ccgcaatctc tctttatttg tagaattagg tatttttgaa
    15781 gaaacagatc tttctggtga acgcaatttc cgtttagctt gtacacacga gcatcaccat
    15841 catcatttta tttgcatgaa atgtgggaaa acaaaagaaa ttatgatgtg cccaatggat
    15901 tttttaaccg aagctttacc cggttaccaa attgacggtc ataaattcga ggtttacggc
    15961 gaatgtccag aatgtttaca agcctcttaa tagcaaaagg tccgaattcc gggccttttt
    16021 tattttatgc gtaatgttca cagttatttc atatttgttt cttattctgg acacttttta
    16081 tcgctaaagt aagaagtagc cgaaagacga aggagaggaa cagtttgaca aaattaaaaa
    16141 aagtgatgat ttccgtaata gcagctacat tactactact cgctggttgt ggaagcagtg
    16201 ctgttgttaa aacagatgca ggaagtgtca cacaagatga gctttacgaa gcgatgaaaa
    16261 cgacttatgg aaatgaggtc gtgcaacaac ttactttcaa aaaaatctta gaagataaat
    16321 acaccgtaac agaaaaagaa gtaaatgcag aatacaagaa atacgaagaa caatacggtg
    16381 ac
//
LOCUS       DABQVC010000045        16327 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.045,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000045 DABQVC010000000
VERSION     DABQVC010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16327
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.045"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..724
                     /locus_tag="IBJ56_001040"
     CDS             <1..724
                     /locus_tag="IBJ56_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3417300.1"
                     /translation="DADADADADADADADVDIDWRDFLVEKPTVNPIYEGTKTISGTS
                     IYKNMNINTLLKSLQSDAPAGTTFYINLTLPDGTVIGNVLIHADGTYTINIPNYNLKA
                     GDVIHLQVTAKYGNEVKTSEDVAVTVLPLADSDADADADADADADADADADADADGGS
                     NPSTNGGTTGTSNGGTGVTVTNMSSNGSGTMLSSGYSADGTTSISASDLPSTGDTNSS
                     LPWVGLGLFSLAGAFLLRLFRK"
     gene            798..2456
                     /locus_tag="IBJ56_001041"
     CDS             798..2456
                     /locus_tag="IBJ56_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(glycerol-phosphate)
                     alpha-glucosyltransferase"
                     /protein_id="HAM3417301.1"
                     /translation="MPWRGILDELENKIIDQLTEDEEHATYNGKWHGFLTIGYKNKRA
                     IVINFSYLCLANLINEMKKSAIKNQTEEAISFKIDVAVDYRLENLGEWNKKALKTKKN
                     YYRRGIALNENFKIALMEQEINANAILLPGDEGLAINVENMNRYLIQTNKNQAQLNLT
                     VDSTIVTFNTVGWFFDGKKIHELEPSELEHGRRSTKQLTPDAVFELVGNAGNYLASQV
                     NQTGEFNYGWFACFDKKIKHYNSLRHASTTYSMLEAYELTGDKTILEAATSTLTYLEQ
                     NFIYEKDELAFLIEPGLREVKLGGSAATLLALTKYMKITGTKTYLPLSRKIANAIISL
                     QEENGKFTHVLEYPSLEVKDIFRIIYYDGEAVFGLLRLYEIDRDSKWLEAAAKSFDQF
                     IRDDYWQNHDHWLSYCANEITKYIPDEAYYEFGMKNAFDNLPFIYGRETTFPTFLELT
                     VATKEMSLRMETEDLQKLLHDYPLAELEKTITKRAIYQLNGYFYPELAIYYKNPARID
                     GSFFIRHQSFRVRIDDVEHNISGYVRYHHLLKQGKLSAEAETVK"
     gene            2559..2831
                     /gene="rpsP"
                     /locus_tag="IBJ56_001042"
     CDS             2559..2831
                     /gene="rpsP"
                     /locus_tag="IBJ56_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HAM3417302.1"
                     /translation="MAVKIRLKRIGSKKKPFYRIVVADSRFPRDGRSIETIGTYNPLL
                     DPVEVKIDEEATLKWMHNGAKPSDTVRNLLSREGIMEKFHNQKLGK"
     gene            2848..3078
                     /locus_tag="IBJ56_001043"
     CDS             2848..3078
                     /locus_tag="IBJ56_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HAM3417303.1"
                     /translation="MEELILSIVKPLVGHPEDVVITPEETDTSLTYKLSVSKEDMGRV
                     IGKQGRIAKAIRTLVYAVGSKNDKKIRLEIIE"
     gene            3189..3923
                     /locus_tag="IBJ56_001044"
     CDS             3189..3923
                     /locus_tag="IBJ56_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HAM3417304.1"
                     /translation="MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIA
                     LPIDDPSVAVQAISLVDGLLLTGGQDITPQFYLEEPSQEIGAYFPPRDSYEIALVRAA
                     LDAGKPIFAICRGMQLVNVALGGSLYQDISQVETKALQHLQRVDEQLGSHTIDIESTS
                     ELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPE
                     LMFQTDPESEQLFRALVDESKKTMVK"
     gene            3951..4337
                     /locus_tag="IBJ56_001045"
     CDS             3951..4337
                     /locus_tag="IBJ56_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417305.1"
                     /translation="MEIIQKVVVKQILTEASKQELIEYYTEQKRQIEQECDQLHFEQK
                     KMERKSKFQPERVADYFTHELDLRREKKKLIQFQMEQLEVLELGSEIREREMETIIDV
                     QVGDKWDKSIFDKTIVVKDGIIVEIR"
     gene            4347..4865
                     /gene="rimM"
                     /locus_tag="IBJ56_001046"
     CDS             4347..4865
                     /gene="rimM"
                     /locus_tag="IBJ56_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HAM3417306.1"
                     /translation="MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEK
                     NSKKPEKLIIRSHRKHKNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYF
                     HEIIGCIVVTTDGEELGEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDK
                     KITIEVMEGLLD"
     gene            4865..5602
                     /gene="trmD"
                     /locus_tag="IBJ56_001047"
     CDS             4865..5602
                     /gene="trmD"
                     /locus_tag="IBJ56_001047"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HAM3417307.1"
                     /translation="MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEG
                     KHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETKPRVILMDPAGKRFDQKMAEE
                     FAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGV
                     LGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTY
                     ERRPDLLKNYPLTDKQKTWLKEWSDSK"
     gene            5622..6011
                     /locus_tag="IBJ56_001048"
     CDS             5622..6011
                     /locus_tag="IBJ56_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417308.1"
                     /translation="MAIFGTPDEKETKKSERQKEREAYVQEENDQKRIGQRWQDIQVS
                     TGPINVNHDILTVVFAKSVRPRIKSDPEAYLETVGFENLLQELQKKALDAGGNGLIHC
                     SFTEQFVDGLVYQLAYGTAVNIKITRF"
     gene            complement(6042..6758)
                     /locus_tag="IBJ56_001049"
     CDS             complement(6042..6758)
                     /locus_tag="IBJ56_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAM3417309.1"
                     /translation="MKITAKHQYWQITTLPYLFPVNCYLILEKDGLTLIDTGILSNAK
                     GIIALIHKLNLPLKRILLTHAHGDHIGGLVAVKAAFPEALVMIGSREKLLVETKEIYA
                     FEAQKPLKGGYSDQLPVSIDHILKDGDMIGSLLIIDTPGHTPGSISFFDERNGHLFVG
                     DLFQTRGGAAICGEKRWLFPFPAMGSWDLPTSIASAENLQLFDVTEIACGHGPVKAMA
                     DFDLTNVLKRAKKQATNEKD"
     gene            complement(6755..7366)
                     /locus_tag="IBJ56_001050"
     CDS             complement(6755..7366)
                     /locus_tag="IBJ56_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin family protein"
                     /protein_id="HAM3417310.1"
                     /translation="MAKIVAIIGDPREKGTSRDLFQKYLAVFQEQPTIEVKIYDIRKL
                     AFDPNLPEGYRTEQTPDIIALKNDVRSADLLLFSYPVWWFNVPAVLKGVIDHLFWPGE
                     SYSFKDKKYFLTGPWRKKRARLIYTIGGMEIQHRLFARPALTALRYPLWMSGVFSVKV
                     TSIDRLDLSIRRTDDYYDKKVTRAAKRDIQFLLKKQIRKKVFA"
     gene            complement(7366..7800)
                     /locus_tag="IBJ56_001051"
                     /pseudo
     CDS             complement(7366..7800)
                     /locus_tag="IBJ56_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465313.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
     gene            8009..8353
                     /gene="rplS"
                     /locus_tag="IBJ56_001052"
     CDS             8009..8353
                     /gene="rplS"
                     /locus_tag="IBJ56_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HAM3417311.1"
                     /translation="MNKLIDEITKSQLNPDVPNFRPGDTVRVHAKVVEGTRERIQLFE
                     GVVIKRRGAGISETFTVRKISNSVGVERTFPVHTPRIAKLEVIRRGKVRRAKLYYLRN
                     LRGKAARIKEIR"
     gene            9138..10028
                     /gene="inlC"
                     /locus_tag="IBJ56_001053"
     CDS             9138..10028
                     /gene="inlC"
                     /locus_tag="IBJ56_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 3 internalin InlC"
                     /protein_id="HAM3417312.1"
                     /translation="MKKNNWLQNVVIAMLVLIVGLCINTGSGTKVQAESIQRPTPINQ
                     IFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIKSLAGMQFFTNLKELH
                     LSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFVDNNELRDTDSLIHL
                     KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV
                     NEPVRYQPELYITNTVKDPDGRWISPYYISNGGNYVDGCVLWELPVYTNEVSYKFSEY
                     INVGETEAIFDGTVIQPIQN"
     gene            10470..10985
                     /gene="infC"
                     /locus_tag="IBJ56_001054"
     CDS             10470..10985
                     /gene="infC"
                     /locus_tag="IBJ56_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HAM3417313.1"
                     /translation="MSKDMLVNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLD
                     LVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKVIVMKEVRLSPTIDEHDFDTK
                     LRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRS
                     MFLVLAPLHEK"
     gene            11007..11207
                     /gene="rpmI"
                     /locus_tag="IBJ56_001055"
     CDS             11007..11207
                     /gene="rpmI"
                     /locus_tag="IBJ56_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HAM3417314.1"
                     /translation="MPKMKTHRGSAKRFKRTGSGKLKRRHGFTSHMFANKSQKQKRKL
                     RKSAMVSAGDFKRIRQMVAKMK"
     gene            11247..11606
                     /gene="rplT"
                     /locus_tag="IBJ56_001056"
     CDS             11247..11606
                     /gene="rplT"
                     /locus_tag="IBJ56_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HAM3417315.1"
                     /translation="MPRVKGGTVTRKRRKKIVKLAKGYYGSKHLLFKVANQAVMKSYQ
                     YAYRDRRQKKRDFRRLWIARINAAARMQDLSYSKLMHGLKLAGIDINRKMLADLAVND
                     IASFNTLADSAKKALAK"
     gene            complement(11647..12402)
                     /gene="xth"
                     /locus_tag="IBJ56_001057"
     CDS             complement(11647..12402)
                     /gene="xth"
                     /locus_tag="IBJ56_001057"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HAM3417316.1"
                     /translation="MKLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQIE
                     LDLPAYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEEFFMV
                     TVYTPNSQAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTN
                     RKNAGFSDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYF
                     VVSERLKDKLVDAKIHADVLGSDHCPVELELNL"
     gene            12486..13016
                     /locus_tag="IBJ56_001058"
     CDS             12486..13016
                     /locus_tag="IBJ56_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HAM3417317.1"
                     /translation="MGNYVVLLRAVNVAGKNKVNMKNLQAALQEVGFQNVITYIQSGN
                     LVLSSMLQTELEVATKITEVMKATFDLTIDVFVFSEQNYSQIIANNPFPPETIGEEER
                     WMAAFYNENIAIARQKNEQAEVIAIGRVLYIHIFSNQIHTLKLPVFLGEYKKTITTTR
                     NWRTTLQLQTLLDSQE"
     gene            13074..14306
                     /gene="pepT"
                     /locus_tag="IBJ56_001059"
     CDS             13074..14306
                     /gene="pepT"
                     /locus_tag="IBJ56_001059"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HAM3417318.1"
                     /translation="MKEELLKRFTKYVKVDTQSNEESTACPTTPGQMELANILVTELK
                     EIGMQEVTVDEFGYVMATLPSNTTKEVPVIGFLAHLDTATDLTGKNVQPQVHENYDGK
                     DIVLNKDLNVVLSPKQFPELADYKGKTLITTDGTTLLGADDKAGITEIMVAMNHLINH
                     PEIKHGKIRVAFTPDEEIGRGPERFDVEAFGAKYAYTMDGGPLGELEYESFNAAGAKI
                     TFNGNSVHPGTAKNKMVNAVKMAMEFNAHIPKDEAPEYTEGYEGFYHLISLNGDVEQA
                     KAYYIIRDFDHLKFVERKTHIASIAKELEEKYGEGSVELKLNDQYYNMREKIEPVKEI
                     VDIVSAAMRNLDIEPKISPIRGGTDGAQLSYKGLPTPNIFGGGENFHGKFEYVALESM
                     VKATEVIIEVARLFEEKE"
     gene            complement(14325..14687)
                     /locus_tag="IBJ56_001060"
     CDS             complement(14325..14687)
                     /locus_tag="IBJ56_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417319.1"
                     /translation="MYETMIAKAGVRELLGMDTSLIYGSFAYKMEGEWMDLTGLWISN
                     ADALIFYLENEDVYLLKKFDYERIEKVEQKVSILSMTKKLILHLNNKESYTLLVANGE
                     AKVFTARVNERIEKVSLG"
     gene            complement(14737..15510)
                     /locus_tag="IBJ56_001061"
     CDS             complement(14737..15510)
                     /locus_tag="IBJ56_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417320.1"
                     /translation="MFAFENVCLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLL
                     QLLNGYLWPSSGNLQVLGHVFGQTSLPELRKSIGWVSNALDHQLKEYEFSEQIVLSGK
                     FASIGIYEKVTTAEIDQAKKLLTDCGGSTLIGKPYKILSQGERQIVLIARALMASPKL
                     LILDEPCNGLDLFAKERLLERIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGE
                     ITHHGKTENLLTEEVLQDFYQKPVELIRIKDGSIAVYPK"
     gene            15579..16184
                     /locus_tag="IBJ56_001062"
     CDS             15579..16184
                     /locus_tag="IBJ56_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HAM3417321.1"
                     /translation="MKQEEIIIAAQKWMQSHFEKETTGHDWEHIKRVWHLSKQIQATE
                     GGDKFAIELAALFHDYNDSKLTSDPAQATEVITHWMKGKEIPEEIISKIIRIIQSVSF
                     KNGKNPTQASTIEEKIVQDADRLDAIGAIGIARTFTYGGAHNREIANRDHPENTTLQH
                     FYDKLLLIQKQLKTKTGRELAGEKQKIMQEFIHALEKELKI"
BASE COUNT         5641 a         3063 c         3112 g         4511 t
ORIGIN      
        1 ggatgctgat gctgacgccg atgccgatgc ggatgccgat gccgacgtag acattgactg
       61 gagagatttc ctagttgaaa aaccaactgt aaatccaatt tacgaaggaa ctaaaacaat
      121 ttcaggtact tccatttata aaaatatgaa tataaatacc cttctgaaat cattgcaatc
      181 agatgcaccg gctggaacaa ctttctatat taatttgact cttccggacg gtactgttat
      241 cggaaatgtc ttaatccatg cagatggaac ctatactatt aatattccta attataattt
      301 gaaagctgga gatgttattc atcttcaagt aacagctaaa tatggtaatg aagttaaaac
      361 gagtgaagat gtagccgtaa ctgtcctacc attagcagat tctgatgccg acgctgatgc
      421 cgacgctgat gccgatgccg atgccgacgc tgatgcggat gcggatgcgg atggtggatc
      481 aaatccttct accaatggag gaactactgg aacttctaac ggaggaactg gcgtaaccgt
      541 tacgaacatg agttcaaatg gttcaggaac aatgctttcc tcaggttata gcgcggatgg
      601 aacaacttct atctcagcaa gtgatcttcc ttcaactgga gatacaaaca gtagtcttcc
      661 gtgggttggg cttggtctct tctcgctagc tggcgcgttt ttactacgtc ttttccgtaa
      721 ataagagcca caatacaacg attccctgtc gctaagaaaa tttagcggca gggatattat
      781 aaaaaggagt ggtacgtatg ccttggagag gtatattaga tgaacttgaa aataaaatta
      841 ttgatcaatt aacagaagac gaagaacacg ccacttacaa cgggaaatgg catggctttc
      901 taacaatcgg ctataaaaat aaacgagcta ttgtcataaa ctttagctat ctttgcctag
      961 ccaacttaat taatgaaatg aaaaaaagtg caataaaaaa ccaaaccgaa gaggcaattt
     1021 cttttaaaat tgatgttgct gtggattatc gacttgaaaa tttaggagaa tggaataaaa
     1081 aagctttaaa aacgaagaaa aattattata gacggggcat tgccttaaat gaaaatttta
     1141 aaatagcttt aatggaacag gaaattaatg cgaacgctat ccttctacca ggtgatgaag
     1201 gtttagctat caacgttgaa aatatgaata gatatttaat ccaaacaaat aaaaaccaag
     1261 ctcaattaaa cttaaccgta gattccacta ttgttacttt taatacagta ggatggtttt
     1321 ttgacggaaa gaaaatccat gagttagaac caagcgagct tgagcatggt cgtagaagta
     1381 ctaaacaatt aactccagat gcagtttttg aactagttgg aaacgctgga aattatttag
     1441 cgagccaagt aaatcaaacg ggcgaattca attacggctg gtttgcttgc tttgataaaa
     1501 aaattaaaca ctataatagt ttgcgccacg cgagtacaac ttattcgatg ttagaagcat
     1561 acgaattaac aggcgataaa acaattttgg aagcagctac aagcacttta acttatttag
     1621 agcaaaactt tatttatgaa aaagacgaat tagctttttt aattgaacca gggttgcgtg
     1681 aagttaaatt aggcggttca gcggcgacat tgcttgcttt aacgaaatat atgaaaatca
     1741 ctggaactaa aacctatttg ccactatcta ggaagattgc gaatgcgatt atttccttac
     1801 aagaagaaaa cgggaagttc acgcatgtgt tggagtatcc ctctttagaa gtaaaagata
     1861 ttttccggat tatttattac gacggggaag ctgtgtttgg cttgttgcgc ttatatgaaa
     1921 ttgaccgtga ttccaaatgg ctggaggcag cggcaaaatc ttttgaccag ttcattcgtg
     1981 atgactactg gcaaaaccat gatcactggc tgagctactg cgccaatgaa atcactaaat
     2041 atattccaga cgaagcttac tacgaatttg gaatgaaaaa tgctttcgac aacctaccat
     2101 ttatttatgg acgcgaaacc acatttccaa cctttttaga gcttactgtt gctacaaaag
     2161 agatgtcgct acggatggaa acagaggact tgcaaaaact gcttcatgac tatccactag
     2221 ctgaattgga aaaaacaatc actaaacgag ctatctacca gttaaatggc tatttttacc
     2281 cagagctagc aatctactac aaaaatccag cgcgaataga tggcagtttc ttcattcgcc
     2341 accagtcttt ccgggttaga attgatgatg tggagcataa tatttcagga tatgtgcgtt
     2401 accaccacct tctaaaacaa gggaaactaa gtgctgaagc cgaaaccgtc aaataaaaag
     2461 aaaaaaattc cctctgtaaa gaaaaaacac tttacaaaca aatcctttac tggtaatata
     2521 tatacttgtg taagacttta tggaggtgta attaaactat ggcagttaaa attcgtttaa
     2581 aacgtattgg ttctaaaaag aaacctttct accgtattgt agtcgctgat tctcgtttcc
     2641 cacgtgatgg ccgttcaatc gaaactattg gtacttataa tccattactt gatccggttg
     2701 aagtgaaaat cgacgaagaa gcaactttga aatggatgca taatggtgcg aaaccatctg
     2761 atacagttcg caatcttctt agccgcgaag gtatcatgga aaaattccat aaccaaaaat
     2821 taggtaaata aggaggtctc ggcgcgaatg gaagaactca ttctctcaat cgtgaaacct
     2881 cttgttggcc acccggaaga cgttgttatc acgccagaag aaacggatac atcgttaacc
     2941 tacaaattgt ctgtcagtaa agaagacatg ggacgcgtga ttggtaagca aggtcgtatt
     3001 gcgaaagcga ttcgtacact tgtctacgca gttggctcca aaaacgataa gaagattcgt
     3061 cttgaaatta tcgaataaca aaaactcgtc aatttggcga gtttttttat aactattttt
     3121 aaataatcat cagagaagca attacctcac taaatgttgt aaaatagaat agaaatggag
     3181 gaattgtgat gaagccagtt attggaatta ccggaaatag attagtaaaa ggtgtggacg
     3241 ttttttacgg acatcgtgtg acttatacgc aacagcgata tgtagatgct attcaaaaag
     3301 ttggcggatt tcctatcgct ttgccaatag atgacccgtc tgttgccgtt caagcaattt
     3361 ctctcgtaga tggtttgctt ttaaccggtg gacaagacat tacgccacaa ttttatttag
     3421 aagagccgtc ccaagaaatc ggcgcttatt ttccacctcg ggacagctat gaaatcgcct
     3481 tagttcgagc agcattagac gctggaaaac cgatttttgc tatttgccgc gggatgcaac
     3541 tagttaatgt ggcgttaggc ggctcacttt atcaagatat cagccaagtc gaaacgaaag
     3601 ccctccaaca tttgcagcgc gtcgatgaac aactcggctc tcatacaatt gatattgaat
     3661 cgacaagtga actcgcaaag catcacccga ataaaaaatt agtcaattca ttgcatcacc
     3721 aatttatcaa aaaattagcg ccaagtttta aagtaacagc gcgtactgcg gatggaatga
     3781 ttgaagctgt agaaggtgac aatttgccaa gttggtactt aggtgttcag tggcacccag
     3841 aattaatgtt ccaaacagat ccggaaagtg aacaattatt ccgggcatta gtagatgaat
     3901 ccaaaaaaac tatggtaaaa taaggacata atcgctagtg gaggtgtcct gtggaaatca
     3961 tccaaaaagt tgtcgtcaaa caaattctaa ccgaagcaag taaacaagaa ttaatcgagt
     4021 attataccga gcaaaaacga caaatcgaac aagaatgcga ccagttgcat tttgaacaaa
     4081 agaaaatgga acgaaaaagc aaatttcaac cagaacgagt ggccgattac tttacccacg
     4141 aactcgacct gcgccgagaa aagaaaaaac tcattcagtt tcaaatggaa caattagaag
     4201 tcctcgaact tggcagtgaa attcgcgaac gagaaatgga aacgattatt gatgtacaag
     4261 taggagacaa gtgggataaa tccatttttg ataaaaccat tgttgtaaaa gatggaatca
     4321 tagtagaaat acgctagagg tgacttatgg agaaaatgta taatgtagga aaaattgtta
     4381 atactcatgg cttgatcggt gaaattcgtg ttatcgcaac gaccgatttt ccagaagaac
     4441 ggttccaagt tgggaatacc gtgtacttat ttgaaaaaaa cagcaaaaag cctgaaaaac
     4501 taatcattcg ctcacaccgc aaacataaga actttgattt gctgatgttt gaaggattca
     4561 ctggaattca tcaagtggaa cgtatgaaag aaggcgtact taaaatcaaa gaagcgcaac
     4621 taactgattt agaggaaaac gaattttatt ttcatgaaat catcggttgt atcgttgtaa
     4681 ctactgacgg cgaagagctt ggcgaaatca cagaaattct aacaccaggc gccaatgatg
     4741 tatgggttgt aaaaggcagc gacaaaaaag aaaaactaat tccttatatt gccgacgttg
     4801 taaaagaaat caatattaat gacaaaaaaa ttacaatcga agtcatggaa ggactgctag
     4861 attaatgaaa attgacattc tatccatttt cccagatatg ttttcgggag tgaccggaaa
     4921 ttccattata aaaaaagcca tcgaaaatga gcgtgtcgcg gttgaagtga ctgatttcag
     4981 ggaatatgca gaaggaaagc atcatattgt cgatgattac ccttatggtg gcggggcagg
     5041 tatgttactc aaagcgcaac cgatatttga tgccgttcaa gctgtcaaag agaaacaacc
     5101 agaaacaaag ccaagagtta ttttaatgga cccagcaggc aaacgcttcg accaaaaaat
     5161 ggcagaagaa tttgccgaag aagagcatct tgtttttatt tgcgggcact atgaaggtta
     5221 cgacgaacga attcgcgaac accttgttac ggatgaagtg tcgattggag attacatttt
     5281 aactggtggc gaaattggtg caatgattgt aatggacagt gttatccgac ttttaccggg
     5341 agtacttggt aataaagatt ccgctgtgac agattctttc tcgaccggtt tgcttgaaca
     5401 tccacactac acgcgaccag ccgattttag aggaatgaaa gtgccagata ttttactcag
     5461 cggaaatcat gcatggatag aagaatggcg cgacaaagaa tcgctcaaaa gaacctacga
     5521 acgccgccca gatttactta aaaactatcc cttaacagac aagcaaaaaa cttggctcaa
     5581 agaatggtct gacagtaaat aatcaaagga cgtgatttta aatggcaatt tttggaacac
     5641 ctgatgaaaa agaaaccaaa aaatccgagc gtcaaaaaga acgagaagcc tatgtacaag
     5701 aagaaaatga ccaaaagcga attgggcaaa gatggcaaga catacaagtt tccactggac
     5761 cgattaatgt gaatcatgat atcctcacgg ttgttttcgc caaaagtgtc cgcccaagaa
     5821 tcaaaagtga tccagaagca tacttagaaa cagtgggctt tgaaaattta ctacaggaat
     5881 tacaaaagaa agcattagat gcaggcggga atggcttaat tcactgttcg tttaccgagc
     5941 aattcgtcga tggcctcgtt tatcaactcg catatggaac agccgtaaac atcaaaatta
     6001 cgagattcta aaaaaagact agaaagccag taattggttt tctagtcttt ttcatttgtt
     6061 gcttgtttct ttgctcgctt tagtacattc gttaagtcaa aatcagccat cgctttcacc
     6121 ggtccatgtc cacaagcaat ttccgtcaca tcgaaaagct gtaaattttc cgccgatgcg
     6181 atacttgttg gaagatccca agaacccatc gctggaaaag ggaacaacca tcgcttctcc
     6241 ccacaaatag ccgctcctcc acgagtttga aataaatctc ctacaaataa atgcccatta
     6301 cgctcatcaa aaaaggaaat ggagccaggt gtatgtcccg gcgtatcgat aattaacagg
     6361 gagccaatca tatcaccatc ttttaaaatg tgatcaatgc ttactggaag ttgatctgaa
     6421 taaccgcctt ttaacggctt ctgtgcttca aaagcataaa tttctttcgt ttctacaagc
     6481 aatttttctc tgcttccaat cattacaagc gcttctggaa aagctgcttt cactgcgact
     6541 aaaccgccaa tatggtcacc atgcgcatgc gttaataaaa tccgttttaa aggtaaattt
     6601 aatttgtgga tgagtgcaat gattcctttc gcgttcgaca aaatcccagt atcaatcaat
     6661 gttaagccgt ctttttctaa aattaagtaa caattcaccg gaaaaagata cggcaatgtc
     6721 gtaatttgcc aatattgatg tttggcagta attttcatgc aaaaaccttc tttctaattt
     6781 gcttttttag caagaattga atatcgcgtt ttgctgcacg tgtaactttt ttatcatagt
     6841 agtcatcagt ccttctgata gaaagatcca gtcgatcaat tgaagtcact ttcaccgaaa
     6901 acacgccact catccataat gggtaacgca aggcagtaag agcagggcgg gcgaaaagtc
     6961 gatgttgtat ttccattccg ccaatcgtat aaatcaaccg cgctcgtttt tttcgccaag
     7021 gtccagtaag aaaatatttt ttatctttaa aactatagct ctccccaggc caaaacaaat
     7081 gatcaataac accttttaac acagccggaa cgttaaacca ccaaaccgga taagaaaata
     7141 gaagtaaatc agcggaacga acatcatttt taagcgcaat tatgtcaggg gtttgctccg
     7201 tacgatagcc ttcaggtaaa ttagggtcaa aagctaattt gcggatatca tagattttta
     7261 cctcgattgt tggttgttcc tgaaaaacag ctaaatactt ctgaaacaaa tctcttgatg
     7321 tacctttttc ccgtgggtca ccaataatcg ccacaatctt agccattaga acccgtcctt
     7381 tctgatgtca gtaaaaatat gctccacaaa agtgttaaca tctttttgaa cagtgctgta
     7441 atcttggacc tcgtcaattt gcggcaattc ttctaaaaga gcagcgattt ttgtatagtg
     7501 tgcaatcgtc tgtttgattt ccgctgcttt aagcgcaagt aactcttttg atgccgtatt
     7561 acaagcgaca gaaggctcgc ttctcaacca ttccatcatc aattttattt cagaaagaga
     7621 aaatcaggca tatttcatta ctaaaataaa ctttaattct aatagatgtt ccgtgttata
     7681 cacacgatac ccgttttcca gccgattagg tacaattatc ttgttttttt cataatatcg
     7741 taatgtatcc gctgaaatac ctacataagc agccatttct tttactgtcc attgttccat
     7801 ctctgacacc tccatttaat atactaaagg taacattaaa ccatactcca aggtcaagct
     7861 tttttatcaa aagaaaaagt aagaaaaaaa ctttacagcg aaactagttt atggtaacct
     7921 aaataaggtg actggagaga ccagtctgat aacgatattc cgcttcatta ttaatatgaa
     7981 tgaatgtttg ttggaaggag agaaaaacat gaacaaactg attgatgaaa tcacaaaaag
     8041 tcaactaaac ccagatgttc caaatttccg tccgggtgat actgtacgtg tacatgcgaa
     8101 agtagtcgaa ggtactcgcg aacgtatcca attattcgaa ggcgttgtaa tcaaacgtcg
     8161 cggagctgga atcagcgaaa ctttcactgt tcgtaaaatt tctaacagtg ttggcgtgga
     8221 acgtactttc ccagtacata ctccacgtat cgcaaaatta gaagttattc gtcgtggtaa
     8281 agtacgtcgt gcgaaacttt actacctacg taacctacgt ggtaaagcgg ctcgtattaa
     8341 agaaattcgt taatcattta acggctgaaa cccttgagaa atcaagggtt tttgttttgc
     8401 ttggaattag aatactaaaa tgcgaaattt tcacctttcg tttttactta caaaagtggg
     8461 ggtgttccaa taaggaaaat cgttttgtca aattatgcgt tacacttcaa aggtggggct
     8521 tgggatactg cggcatagaa agtagagtcc gccaaaacca aaacgacaga taaatatgcg
     8581 cggaaagttg ggtatgactt acatggtccg ggatggtata ctatacaagc gtatggttca
     8641 aaaagatact ttgaattaag aagtacaaga aagttaactt cattagacaa aaagaaaaaa
     8701 caggcaagaa tagtacatag ttataaatac tgtggagagt gaggtgtaat atgggagcag
     8761 ctgatttttg gggtttcata tatgtagttt caagatagct attgttgcgg cagtggttta
     8821 cttcttatac ttattgagaa aaattgcaaa taaatagaaa aaagccttgt caaacgaggc
     8881 tttttttatg caaaaaatac gacgaatgaa gccatgtgag acaacttgga ctagcagaca
     8941 acaaagaagg tagaacatgt tttgaaaaat ttactgattt tcgattattt ttaacgcttg
     9001 ttaatttaaa catctcttat ttttgctaac atataagtat acaaagggac ataaaagatt
     9061 cacagcgttt gttaaatagg aagtatatga aaatcctctt ttgtgtttct aaatttattt
     9121 ttaaggagtg gagaatgttg aaaaaaaata attggttaca aaatgtagta atagcaatgc
     9181 tagtgttaat tgtaggtctg tgcattaata cgggttctgg gacaaaagta caagctgaga
     9241 gtattcaacg accaacgcct attaaccaaa tttttccaga tcccggccta gcgaatgcag
     9301 tgaaacaaaa tttaggaaag caaagtgtta cagaccttgt atcacaaaag gaactatctg
     9361 gggtacaaaa tttcaatgga gataatagca acattaaatc tcttgccgga atgcaatttt
     9421 tcactaattt aaaagaactt catctatccc acaatcaaat aagtgacctt agtcctttaa
     9481 aggatctaac taaattagaa gagctatctg tgaatagaaa tagactgaaa aatttaaacg
     9541 gaattccaag tgcttgttta tctcgtttgt ttgtagataa caacgaactc cgagatactg
     9601 actcgcttat tcatttgaaa aatctagaaa tcttatctat tcgtaataat aagctaaaaa
     9661 gtattgtgat gcttggtttt ttatctaaac tagaggtatt agatttgcat ggtaatgaaa
     9721 taacaaatac aggtggacta actagattga agaaagttaa ctggatagat ttaactggtc
     9781 agaaatgtgt gaatgaacca gtaagatacc aaccagaatt gtatataaca aatactgtca
     9841 aagacccaga tggaagatgg atatctccat attacatcag taatggaggg aattatgtag
     9901 atggttgtgt tctgtgggaa ttgcctgttt atacaaatga agtaagctat aagtttagcg
     9961 aatatataaa cgttggggag actgaggcta tatttgatgg aacagttata caacctattc
    10021 agaattagga cttatgcata catgtttgat gttttgaatg gatatgcaca ctgtatactt
    10081 ttagctctcg tatagtcacg atagcttttt caatatgaaa gttttaactg ccttttgaca
    10141 gaaagaacgt ttattcgtat aagattgccc agaggtaaag aaactatttt atttacaatt
    10201 caccttgaca ccaaaaatcc catatgatat agtaagtaag gttattaaac aagaaagaag
    10261 aagcaacccg cttctcgcct cgttaacacg aacgttttca ggcaaaaaat tcaaactttc
    10321 gtcgcgtaac ttacgcgatt ttgaatgtgc gggattgctg aaaagcagcc cgttttttta
    10381 tggcctccga acgaatgagt tagcaggccg cagatttgaa cagctatttt ctatcttgtt
    10441 gtaacaaaat taagtggagg tggctcacca ttagcaaaga catgttggta aacgatggga
    10501 ttcgtgcacg tgaagtaaga ttgatcgacc aagacggtga acaattaggc gtgaagagta
    10561 aaatcgatgc gcttcaaatt gctgaaaagg ctaatcttga tctagtgctt gttgctccaa
    10621 cagcgaaacc gccagtagct cgtatcatgg actacggtaa attccgtttt gaacaacaga
    10681 agaaagataa agaagcccgt aagaaccaaa aagtcatcgt gatgaaagaa gttcgtttaa
    10741 gtccaacgat tgacgaacat gacttcgata cgaagctacg taatgcacgt aaattccttg
    10801 aaaaaggcga taaagtaaaa tgctctatcc gttttaaagg tcgtgccatt acacacaaag
    10861 aaatcggtca gaaggtgctt gaccgttttg caaaagcgtg cgaagacctt tgtacaattg
    10921 agcaaagacc aaaaatggac ggacgttcca tgttcttagt cctagcacca cttcatgaaa
    10981 agtaaagttt tgaggaggaa aaattcatgc caaaaatgaa aacccaccgc ggttccgcta
    11041 aacgtttcaa gagaacagga tctggaaaat taaaacgcag acacggcttc actagccata
    11101 tgttcgctaa caaatcccaa aaacaaaaac gtaaattgcg taaatctgca atggtatcag
    11161 ctggcgactt caaacgtatt cgtcaaatgg tcgctaaaat gaaataagag aaacaacatt
    11221 tttgtaaatt ctaggaggta gacaatatgc cacgcgtaaa aggcggaaca gtaacacgca
    11281 aacgtcgtaa aaagatagtt aaattagcca aagggtatta tggctctaaa catttattat
    11341 tcaaagtagc taaccaagcg gtaatgaaat cttaccaata tgcttataga gatcgtcgtc
    11401 aaaagaaacg tgatttccgt agattatgga tcgcacgtat caatgcggca gctcgtatgc
    11461 aagatctttc ttacagcaaa ttaatgcacg gcttaaaatt agctggtatt gatattaacc
    11521 gtaaaatgct tgcagactta gcagttaatg atatcgcatc attcaacaca cttgctgatt
    11581 cagcaaaaaa agcattagct aaataattca aaaatcctca ctctttggag tgaggatttt
    11641 tttaggttat aaattaagtt ctagctcgac aggacaatga tccgaaccaa gcacatccgc
    11701 atgaattttg gcatccacta acttatcttt caaacgttcc gatacaacaa aataatcaat
    11761 ccgccaacca gtattcctag cacgcgcgtt cattcggtaa gaccaccaag aataagcatc
    11821 ggtcaaatct gggtaaaaat aacggaaact atcaataaat ccagcatcta aaaatgcaga
    11881 aaatttcgcg cgttcctcat ccgagaagcc agcattttta cgatttgtct tcggattttt
    11941 taaatcaatt tcttcgtgcg caacattcaa atcgccacaa agcacaaccg gcttcgtttt
    12001 atccaagttt tttacatatt ccaaaatcgc atcctcaaac gtcatccggt aatctaatcg
    12061 ttttaattca gcttgcgaat tcggcgtata aaccgtcacc ataaaaaatt cctcaaattc
    12121 aagtgtgata acacgacctt ctgtatcatg ttcaggaacc cctaaaccat attgaactga
    12181 taacggctcc acttttgtaa aaatcgcggt accagaataa ccttttttca ccgcataatt
    12241 ccagtaatct ttatatgctg gcaaatcaag ttcaatttga ccttcttgta atttagtttc
    12301 ctgcaaacaa aaaatatccg catctacttc ttcaaaatac tccaaaaagc ctttttttac
    12361 agctgctcga agcccgttta cattccaaga aattaatttc acctaaaaaa cctcccatcg
    12421 ctaatagcct tattataacg taagtcacat gctataatgt agttaaacga ttgggaggga
    12481 gatagatggg gaattatgta gtgttattaa gagcagtaaa tgttgctgga aagaataaag
    12541 taaatatgaa aaatctacaa gctgctttgc aagaagtagg tttccaaaat gtcattactt
    12601 atatccaaag cggcaacctc gttctaagct ccatgttaca aacggaacta gaagtagcga
    12661 caaaaataac cgaggtaatg aaagcaacgt tcgatttaac tattgatgta ttcgtatttt
    12721 cggaacaaaa ttatagccaa atcatcgcaa acaatccatt tccaccagaa acaattggcg
    12781 aggaggaacg ctggatggcc gctttctata atgaaaatat cgctattgcg agacaaaaaa
    12841 acgagcaagc cgaagtaatc gcgattggtc gcgttcttta tatccacatt ttctccaacc
    12901 aaatccacac cttaaaatta ccagttttcc ttggcgaata taaaaagaca ataacaacaa
    12961 cgcgcaattg gcgaacaacc ctccaattac aaacactact cgacagtcag gaatagaatt
    13021 tttcgaaaat caagtttata atgaaaaaga atcaatttaa gggagtggtc ggaatgaaag
    13081 aagaactatt aaaacgattt acgaaatatg taaaagtaga tacacagtca aatgaagaaa
    13141 gtacagcttg tccaacaaca ccaggtcaaa tggaactggc aaacattctc gttacagaac
    13201 taaaagaaat cggtatgcaa gaagttactg ttgacgaatt tggttatgtt atggcaacac
    13261 ttccttctaa tacaacgaaa gaagttccag taatcggatt tttagctcat ttagatacag
    13321 cgacggactt aacaggcaaa aacgtccaac cacaagtcca cgaaaattat gatggtaaag
    13381 atatcgttct aaacaaagac ttaaacgtgg tactttcacc aaaacaattt ccagaactag
    13441 ctgattataa agggaaaaca ctgattacaa cagatggaac aacgctactc ggtgcagacg
    13501 ataaagcggg cattaccgaa attatggtgg caatgaacca tttaattaac catcccgaaa
    13561 tcaaacacgg taaaattcgt gttgctttca caccagatga agaaattggc cgaggaccag
    13621 aacgttttga tgtagaagca tttggcgcaa aatatgctta tacaatggac gggggcccac
    13681 ttggagaact agaatatgaa agttttaacg ctgcaggtgc caaaatcact tttaatggta
    13741 atagtgttca ccctggtaca gcaaaaaaca aaatggttaa tgctgtcaaa atggcaatgg
    13801 aattcaatgc acacattcca aaagacgaag cgcctgagta cacagaaggt tacgaagggt
    13861 tttatcattt aatttcctta aacggtgatg tagagcaagc caaagcctac tatattatcc
    13921 gcgatttcga tcatttgaaa tttgtggaaa gaaaaacaca tattgctagt atcgccaaag
    13981 agttagaaga aaaatacggc gaaggatcgg tagaattaaa actgaacgat caatattaca
    14041 atatgcgcga aaaaatcgaa ccagtaaaag aaattgtgga tatcgtcagc gcggcgatga
    14101 gaaatctaga cattgaaccg aaaatcagcc caattcgtgg cggaacagac ggcgctcaac
    14161 tttcctacaa aggactacca acacctaata tttttggtgg aggagagaac ttccacggta
    14221 aatttgaata tgttgcatta gaaagtatgg ttaaagcaac agaagtaatc attgaagtgg
    14281 ctcgtttgtt tgaagaaaaa gaatagtaaa aaagtgagtc tagttcatcc tagactcact
    14341 ttttctatgc gctcatttac cctagcagta aagacctttg cttcgccgtt tgcaacaagt
    14401 aacgtatagc tttctttatt attaagatgt aaaatcaatt ttttcgtcat ggaaaggata
    14461 cttacttttt gttctacttt ttctattctt tcataatcga atttcttcag taagtagaca
    14521 tcttcatttt ctagataaaa aatcaacgca tctgcatttg aaatccaaag tcccgttaaa
    14581 tccatccatt cgccttccat tttataagca aatgaaccat aaatcagact agtatccatc
    14641 ccgagaagct cacgtacacc tgcttttgca atcatcgttt catacaaaac atttcgcccc
    14701 tctacatacg catttttcgt attctaacta taccatttac ttcggataga ctgcaatgga
    14761 gccgtctttt atccgaatta attctactgg cttttgataa aaatcttgaa gaacttcctc
    14821 tgtcaaaaga ttttctgttt ttccgtgatg agttatttcc ccgtcacgca gtaaaatgat
    14881 attatcgaag cagggaagaa tttcttccgt atggtgagta acaaaaagca tcgttgggga
    14941 ttctggcagt tccgcaatct tcttaattct ttctaataag cgctcctttg caaatagatc
    15001 aagcccatta caaggttcat ctaaaataag taacttagga cttgccatta aagcacgtgc
    15061 aattaaaaca atttgacgct ctccttgcga taaaatttta tacggctttc caataagtgt
    15121 gctaccgcca caatcggtaa gcagcttttt cgcttggtca atctccgcag tagtgacttt
    15181 ctcataaatg ccaatacttg caaatttccc actaagtaca atttgctcgc tgaactcata
    15241 ctctttcagc tgatgatcaa gcgcattact aacccaacca atcgatttac gtaactctgg
    15301 caaagaggtc tgtccaaaaa catgcccaag tacttgaaga tttccactgc taggccaaag
    15361 atacccattt aaaagttgca acaaagttgt ttttccagaa ccgtttagtc cgagtattgc
    15421 ccagttttcc ttatcattaa ccacccaatt aatatccgat aaaatcattt tattatcacg
    15481 ctttaaacaa acattctcaa aagcaaacat cgaatacccc atttccattt tctactattg
    15541 tacatgaaaa taacgtaaaa aaggagccaa tactaatgat gaagcaagaa gaaataataa
    15601 ttgcagcgca aaaatggatg caatcccatt tcgaaaagga aactactgga cacgactggg
    15661 aacatattaa acgagtctgg catttaagta aacaaatcca agcaacagaa ggcggagata
    15721 aatttgcaat cgaattagca gcattgtttc acgactataa tgatagcaaa ctaacatcag
    15781 atccagcaca agcaacagaa gtaatcacgc attggatgaa aggaaaagaa atacctgaag
    15841 agataatcag taaaatcatc cgaatcatcc aatcagtctc atttaaaaat gggaaaaatc
    15901 ctacccaagc ttctacaata gaagaaaaaa tagttcaaga tgcagaccgc ttagatgcaa
    15961 ttggtgcaat tggtatagct agaacattta catacggagg ggcgcacaat agagaaatcg
    16021 ctaatcgaga tcatccggaa aataccacat tacaacactt ttacgataaa ttgctcctaa
    16081 ttcaaaaaca gctaaaaaca aagactggtc gggaacttgc aggagaaaaa caaaaaatta
    16141 tgcaggaatt tatacatgca ctagagaaag aattaaaaat ataacttaaa aggcttgtat
    16201 ttaatataaa gctgttatat aatgataaag ctgaattgat acaaattaat tcatcaaaaa
    16261 cattttaaaa atagttgttg acgtgatttc aactttatgg taagatttaa aagttgcgtt
    16321 aacaaag
//
LOCUS       DABQVC010000046        16321 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.046,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000046 DABQVC010000000
VERSION     DABQVC010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16321
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.046"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..808
                     /locus_tag="IBJ56_001063"
     CDS             <1..808
                     /locus_tag="IBJ56_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3417322.1"
                     /translation="GYALNYLKELVPMSDIYALVRSEEKGADLKAAGFNIRVGDYSDA
                     ESMKQAFVGIDRVLFVSGAPGNRQVEHENVVNAAKESGVSYIAYTSFAGADKSTSALA
                     EDHFFTEKVIEKSGIAHTFLRNNWYFENEMPMIGGALSAGKFVYAAENGKVGWALKRE
                     YAEVAAKAVAGADFPEILELSGPLMTYEELTKALKEATGKDFDVISSDDKGFVENLVS
                     AGLPQPVAEMFLSFQHDIKNNQLDVTSDDFEKALGKPLTNRVDALRELLK"
     gene            964..1581
                     /locus_tag="IBJ56_001064"
     CDS             964..1581
                     /locus_tag="IBJ56_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear targeted protein LntA"
                     /protein_id="HAM3417323.1"
                     /translation="MKKLVAWFNGLSKMWKVVVIIGAVFVVIIALTTGENEGEQTKTK
                     TNSDKIVKTTSKPKLSTKDLALIKADLAEFEGRELSSEKILKDTIKEESWSDLDFAND
                     NINQMIDTMKRYQQEILSIDAVKRSSEASADTEAFKKVFKEWSDFKIERIQVTIDLLN
                     GKKDSEAAFKKSYPNQIIFKKVRTNKLQTALNNLKVGYELLDSQK"
     gene            complement(1614..2882)
                     /locus_tag="IBJ56_001065"
     CDS             complement(1614..2882)
                     /locus_tag="IBJ56_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="module of peptide synthetase"
                     /protein_id="HAM3417324.1"
                     /translation="MVKITSYPAEPSDVKHYISGEKMKNDHHLHTVLTFDNHLNIDVL
                     KKAVMQSTKKLPLLLCHFKETKKGAFWQESVFSAEDLVFLVETQAPETEVDRALVTKL
                     STENGPQICFTVVRADTSDQLVVIMNHMLADGAGFKEYLYLLSELYSNLLENPDYAAN
                     LSLGSRSLKQIFDQLSRKDIKSIFTEKTKQKAVHNPTFPLKGDPKNPKVIWTKLPKED
                     FSEIIHFAKEHEATVNDVLFAAMARTVQQTTGQQEMSIDCPVDLRKYLPSKTSSGITN
                     LTANITCQISADDDLTSFESTLQAVKNSLNPQKNSFAPLRIYYLLELIFKKKNYSVAK
                     KASEKMYSIPKTSFTNIGIIDEEKLVFEGSTLTDCFICGSLKYAPFFQVAATTFRGEL
                     TLSTNLHGTTQDHAWQKDFLEQMISEFPSK"
     gene            3020..3523
                     /locus_tag="IBJ56_001066"
     CDS             3020..3523
                     /locus_tag="IBJ56_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2004 domain-containing protein"
                     /protein_id="HAM3417325.1"
                     /translation="MTNRTLTTKLLGTLSYTQENGTMMDAVIPLDGKEVKVDYSIFEK
                     LTSEDYFKDIVTLTDQIPELHLEAKKTILEQFDGNDTLTIYFDFHTDELPEAVLEVTE
                     CDALENITKEILIDKLVLSGVWFSENANNELDLTFDFKLLPEVSDELLVVRFNTKGEI
                     TELTHES"
     gene            complement(3565..5601)
                     /locus_tag="IBJ56_001067"
     CDS             complement(3565..5601)
                     /locus_tag="IBJ56_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HAM3417326.1"
                     /translation="MASYGGKKRNNKKAIIIGSIAAVAVLAGIAIYFFIQNQHKDEKN
                     ALAAAETFTSNIAKEKYDKLGSSVSSESLKKVEFTKKEMEDKYQAVYDGIGAKDIKVK
                     NLKSVYDDKENKFNLTYELEMRTSLGKLATQKYKTTISKQDDDWKIDWKPALIFPGMV
                     KTDKVRITEDEAERGQIVDRNGNPLATTGQFAEAGVVPSKLGEGDEKVKNIADISKKL
                     EVSTDYINKQLDQKWVQADSFVPLVTLNKDNLPEATGLTYAQKEMRTYPLNEATSHLI
                     GYVGEVSAEDIEKNPKLSVGDVIGKSGLERYYDKQLRGKNGGAIKIINDQTKQEDTLQ
                     KIDKKDGEEIKLTIDAAVQKKAFDSLGSETGAVTMINPTNGELLALVSTPSYDANQMV
                     LGITSEDYAKYNDDKRLPFLARYANRYAPGSTFKTITATIGLDTGITKPDKVREISGL
                     QWQKDASWGKYFVTRVHDVPKVNMTDALVHSDNIYFAQEGLEIGKDKLTAGLKKFDFD
                     KEYNLPFTMKPAQISNDGLNSEILLADTSYGQGELLMSPIQQAIAYSAIASDGKMPYP
                     KLDTKEKAGKETQATEAASANQVKAALVKTVSDPAGTAHALQIQGHSIAAKTGTAELK
                     EKQGEDGLENGFVYAFDADNPNYLMVGMIENVKGRGGSGLVIDKLKPVIESMYK"
     gene            5773..6087
                     /locus_tag="IBJ56_001068"
     CDS             5773..6087
                     /locus_tag="IBJ56_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417327.1"
                     /translation="MEEMEQPEKKVIIRGKGIHNKWKWSTIIVSILSVIIISVLSYQL
                     YSVSQNTPENNTNGTMQGPGGGEMPSGTPPSGEPGQAPNSSDDSSDSGTSDSTTSSDG
                     TL"
     gene            6224..7153
                     /locus_tag="IBJ56_001069"
     CDS             6224..7153
                     /locus_tag="IBJ56_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HAM3417328.1"
                     /translation="MARHAQKRKARKGRIFVTILVALLILVGVVAVIGYFQYQSSLKE
                     AQNESKLKDYKFNGAKAVGDEINVLLIGSDSRGEDQGRSDSLMIAHYNTKTNTPKLVS
                     IMRDTYVDIPGHGKNKINAAYSYGGPELVRQTIKENFGVDVQYYVVANFEGFPKIVDT
                     LAPEGIKINAEKDMSKNIDANIKKGEQVMDGKTLLQYARFRKDAEGDFGRIRRQQQVL
                     EALKEQAIDVGDVAKIPDVIGKLQGYSSTNIPTGTLMSIGADFLLGKTETMEKFAIPV
                     EGKWHNERIDGAGAVLRLDDMAANAKALQDFLK"
     gene            complement(7201..7749)
                     /locus_tag="IBJ56_001070"
     CDS             complement(7201..7749)
                     /locus_tag="IBJ56_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4240 domain-containing protein"
                     /protein_id="HAM3417329.1"
                     /translation="MKKVSSLLTQDQFWGIIDNSDKGSKLEELLEKLSEDELFGYDYW
                     WNYFHKKSYNQSLWAVAYVVLGGCSDDGFDYFRYWLITRGKAVFTSAVENADTLCGEF
                     DLLTEDEYPENEEIAYLVMDIFENKLGKDFDDAENEAESRIEFEEVSMPPIDFEWDED
                     DEDSIKKVCPNTFAKWWNNDKF"
     gene            7983..8708
                     /locus_tag="IBJ56_001071"
     CDS             7983..8708
                     /locus_tag="IBJ56_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417330.1"
                     /translation="MKDKTKKRKWNWAQILAIFVLVTLVVSMVYATVNLITAPSGNVP
                     EGQQTKGDYSLMLMQCVLGVVVLFLPSIISKKMKFVIPNAMYIVFIVFLYCAIYLGEV
                     RSFYYLIPNWDTILHTFSGAMLGGLGFSIVSLLNNDERITLSMSPVFVALFACSFAVF
                     LGVFWEFYEFAADSFGMNMQKTMLEDGTMLQGHAAVADTMGDLFVDFLGAFVISIIGY
                     FSIRKNKKWMKNFEFKKVDEEVK"
     gene            complement(8752..9417)
                     /locus_tag="IBJ56_001072"
     CDS             complement(8752..9417)
                     /locus_tag="IBJ56_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1275 domain-containing protein"
                     /protein_id="HAM3417331.1"
                     /translation="MARSRQISESIGLGLLLALAGGFMDAYSYIERGQVFANAQTGNI
                     LLFGINISEGNWAIAIQYFWPVVSFTVGIAISEVIHRRDIRRLHWRQLSVLIEAVILI
                     GVAFIPLDHNLIANSLISFVCGIQVESFRKMHGRGVATTMCIGNLRSATQNLCDYFEY
                     KEKQYLRNSLLYFTVILSFIIGAVVGNFFIQLFAQYAILVCAFLQFIAFMMMFIDRES
                     KII"
     gene            complement(9438..10193)
                     /locus_tag="IBJ56_001073"
     CDS             complement(9438..10193)
                     /locus_tag="IBJ56_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4866 domain-containing protein"
                     /protein_id="HAM3417332.1"
                     /translation="MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRG
                     FEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDK
                     EGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIIHSYEPDFSISTKRIN
                     KKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELG
                     VFLPIHHFEKKMLQNIEQVNELVDALREQMVNK"
     gene            complement(10310..12469)
                     /locus_tag="IBJ56_001074"
     CDS             complement(10310..12469)
                     /locus_tag="IBJ56_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HAM3417333.1"
                     /translation="MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLS
                     LGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFR
                     SSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNW
                     AIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLP
                     KKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRV
                     ESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPY
                     GTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVS
                     QYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGA
                     DYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTIT
                     NNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNT
                     ADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVALLALVIIFRR
                     RIRSYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFGTRVDAELTTTEFS
                     RLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK"
     gene            complement(12466..13614)
                     /locus_tag="IBJ56_001075"
     CDS             complement(12466..13614)
                     /locus_tag="IBJ56_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HAM3417334.1"
                     /translation="MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFI
                     LLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLVDMQVSFTRKSRYPVGYLLFQQKIPAS
                     FGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSE
                     KSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKS
                     SAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLL
                     GDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTM
                     LMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK"
     gene            complement(13619..14566)
                     /locus_tag="IBJ56_001076"
     CDS             complement(13619..14566)
                     /locus_tag="IBJ56_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HAM3417335.1"
                     /translation="MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLED
                     VPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGN
                     IVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALP
                     EAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFI
                     DDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLA
                     PYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR"
     gene            14722..16317
                     /locus_tag="IBJ56_001077"
     CDS             14722..16317
                     /locus_tag="IBJ56_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PucR family transcriptional regulator"
                     /protein_id="HAM3417336.1"
                     /translation="MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALL
                     EDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMD
                     QKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSV
                     RPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEH
                     ELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWG
                     RNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAEL
                     KSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQG
                     MEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMR
                     PLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKI
                     PESYNLYLAVAIRRILGGNNNNK"
BASE COUNT         5088 a         2994 c         3188 g         5051 t
ORIGIN      
        1 aggctacgca ttaaattatt tgaaagagct cgttccaatg tccgatattt atgctttagt
       61 tcgtagcgaa gaaaaaggtg cagacttgaa agcagcagga tttaacatcc gagttggtga
      121 ttatagtgat gcagaatcaa tgaagcaagc attcgtagga atcgaccgtg tattatttgt
      181 atcgggcgct cctggtaatc gccaagtaga acacgaaaac gtggtaaatg cggcaaaaga
      241 atcaggtgtt tcttacattg cttacacaag ttttgcaggc gcagataaat ccacaagcgc
      301 tttagcagaa gatcatttct ttaccgaaaa agtaatcgaa aaatccggaa tcgcgcacac
      361 tttcttgcgt aacaactggt acttcgaaaa tgaaatgcca atgattggtg gcgcattaag
      421 tgctggaaaa tttgtatacg ctgctgaaaa tggaaaagtt ggctgggcat taaaacgcga
      481 atacgcagaa gtagccgcaa aagctgttgc gggcgctgac ttcccagaaa tccttgaatt
      541 atctggccca ctcatgacat acgaagaact tacaaaagca ttaaaagaag caactggaaa
      601 agatttcgac gttatttctt cagatgataa aggatttgta gaaaatttag tttctgccgg
      661 tttaccacaa cctgtcgcag aaatgttctt atccttccaa catgacatta aaaataatca
      721 attagatgtt acttctgatg attttgaaaa agcattagga aaaccattaa cgaatcgcgt
      781 agatgcgctt cgggaattgt tgaaataaaa agggacagcc taccttgatt tgaggtaggc
      841 tgttttttta ctgcgcattt tattatcttt tcagtagtat ttatacgacc ttttaaacat
      901 ttgataagaa tgaggctata attttatatg ctctttattt attaaatgaa agaaggaaaa
      961 cgagtgaaga agttagttgc ttggtttaac ggattatcaa aaatgtggaa agtggtagta
     1021 ataataggcg cagtttttgt agttataata gccttaacaa caggagagaa tgaaggtgaa
     1081 caaacgaaga caaaaactaa cagcgataaa attgtaaaaa cgacgagcaa gcccaagctt
     1141 tcaaccaaag atttagcctt gattaaagct gatttagcag aatttgaagg tcgggaactt
     1201 tcttcagaaa aaattttgaa agatacaatt aaagaagaaa gttggtcgga tttggatttt
     1261 gcgaatgata atattaacca aatgattgac acgatgaaac gatatcagca agaaatttta
     1321 agtatagatg cggttaaaag aagttcagaa gcctcggcgg atacggaggc atttaaaaag
     1381 gttttcaaag aatggagtga tttcaaaata gagcggatac aagtaactat cgatttacta
     1441 aatggtaaaa aagatagtga agctgcattt aaaaaatcat atccaaatca aattatcttt
     1501 aaaaaagtgc gcacgaataa attacaaaca gccttaaata acttgaaagt aggctacgaa
     1561 ttattggata gtcagaaata agaaaaagcc atcctgctga ggatagcttt ttcttattta
     1621 gaaggaaatt ctgaaatcat ctgctccaaa aagtctttct gccaagcatg atcttgcgta
     1681 gtaccatgca aattagtact cagtgtcagc tcgccgcgga aagttgtagc agcgacttgg
     1741 aaaaacggcg catactttaa agaaccacaa ataaaacaat ctgttaaagt gctaccttca
     1801 aaaacgagtt tttcctcatc gataatacct atattcgtaa aacttgtttt cggaatagaa
     1861 tacatttttt cagaagcttt ttttgcaaca gagtagttct ttttcttgaa aatcagttcc
     1921 aataaataat aaattcgtag aggtgcaaag ctgttttttt gtggattgag tgaatttttg
     1981 acggcttgga gtgtactttc aaatgacgtt aggtcatcgt ctgcgctgat ttggcatgta
     2041 atattggcgg tgagattggt aattccgcta ctggttttac tcggcaaata cttacggaga
     2101 tccaccgggc aatcaattga catttcttgt tgccctgttg tttgctgaac agtgcgcgcc
     2161 attgcggcga acagaacatc attcacagtt gcctcgtgct cttttgcaaa gtggatgatt
     2221 tccgaaaaat cctcttttgg tagcttagtc caaataactt tcggattttt cgggtcacct
     2281 ttaagaggga aagttgggtt atggacagct ttttgcttcg ttttttccgt aaaaatggac
     2341 tttatatctt tacgcgaaag ttgatcaaaa atttgcttta aactccggga acctaagctc
     2401 aaattcgccg cataatccgg attttcaagc agattagaat aaagctcact caataaataa
     2461 agatattcct taaatccagc gccatctgct aacatatgat tcataataac cacaagctga
     2521 tcagaagtat cagcccgaac aacagtaaag caaatttgcg gcccattttc tgtggaaagc
     2581 ttcgttacaa gtgctcggtc cacttcggtt tctggcgctt gcgtttccac taagaaaacc
     2641 aaatcctccg cagaaaaaac actttcttgc caaaaagcac cttttttcgt ttctttaaaa
     2701 tgacaaagta atagcggaag ttttttagta gactgcatca ctgctttttt tagaacgtct
     2761 atatttaaat gattatcaaa cgtaagtacc gtatgcaaat ggtggtcatt tttcattttt
     2821 tctccagaaa tataatgttt aacatcagaa ggttcagcgg gataactcgt gatttttacc
     2881 atggaaattc cttctttctt cggtttaaat agttgttaat agtttccctg aaagcagtgc
     2941 tgcgaaacaa gttgcggatc aaagtgagtt taagttatac tgagcgtatg caagctacta
     3001 tttctaggag gcaccgaaca tgacaaacag aacattaaca accaagttac taggaacact
     3061 aagctatacg caagaaaatg gaacgatgat ggacgccgta attcctttgg atggcaaaga
     3121 agtaaaggtt gattatagta tttttgaaaa gcttacttca gaagattatt ttaaagatat
     3181 cgttacttta acggatcaaa ttccggaact acacctagaa gcgaaaaaaa ctattttaga
     3241 gcaatttgat ggaaatgata cgcttactat ttattttgat tttcatacag atgaattgcc
     3301 cgaagcggtt ttagaagtta ccgaatgtga tgcgctagaa aatataacaa aggaaatctt
     3361 aatcgataaa ctagttttgt caggcgtttg gttttcggaa aatgccaata atgagttgga
     3421 tttaacattc gatttcaaac tattaccaga agttagcgat gaacttttag ttgttcgttt
     3481 taatacaaaa ggagaaatta ctgaattaac ccatgaaagt taacaaaaaa gagccattct
     3541 gttcgcgaac agaatggctc ttttttattt atacatactt tcaataactg gttttagctt
     3601 atcaattaca agtccgctac caccgcgacc tttgacgttt tcaatcattc ctaccatgag
     3661 gtaattggga ttgtcggcat cgaaggcgta aacaaaacca ttttcaaggc catcttcgcc
     3721 ttgtttttct tttagttcgg ctgtaccggt tttggctgcg atactatgac cttggatttg
     3781 tagggcgtgt gctgtaccag ctggatcaga aacagttttg actaaagctg ctttgacttg
     3841 gttggcagat gcggcttcgg ttgcttgtgt ttccttgcca gctttttctt ttgtatctag
     3901 ttttggataa ggcatttttc cgtcgcttgc aatggccgag tatgcaatcg cttgttgaat
     3961 tggcgacatc agtaattcac cttgtccgta agatgtgtca gctagtaata tttccgagtt
     4021 cagcccatca ttcgaaattt gtgctggttt cattgtgaaa ggtaagttat attccttatc
     4081 aaaatcgaat tttttcaagc cagcagttag tttatctttg ccgatttcta gaccttcttg
     4141 agcgaagtaa atgttatcag agtgcacaag cgcatccgtc atatttactt ttggaacatc
     4201 atggacacga gtgacaaaat acttgcccca tgaagcatct ttttgccact gtaagccaga
     4261 aatttcacgg actttatcag gttttgtaat accagtgtcc agcccaattg tggctgtaat
     4321 tgttttaaag gtagagcctg gtgcgtaacg atttgcgtat cttgctagga aaggtaggcg
     4381 tttgtcgtca ttatattttg cgtaatcttc ggaagtgatc ccgagcacca tttggttggc
     4441 atcataagaa ggggtgctca ctaacgctaa tagttcgcca tttgtcggat taatcatggt
     4501 cacagcacca gtttcggaac cgaggctatc aaaagctttc ttctgaacgg ctgcatcaat
     4561 cgttagttta atttcttcgc catctttttt atcgattttt tgtaaagtat cttcttgctt
     4621 ggtttggtca ttgatgattt taattgcgcc accattttta ccgcgcagtt gtttgtcata
     4681 gtaacgttct aagccacttt tcccaatgac atcgccaacg ctgagttttg gatttttttc
     4741 aatatcttcg gcgctaactt caccgacata gccaatcaaa tgcgaggttg cttcatttaa
     4801 tgggtacgtc cgcatttctt tttgagcata cgtaagtcca gtagcctcag gtagattatc
     4861 tttattcaat gtaactaaag gaacgaagct atctgcttgg acccattttt gatcgagctg
     4921 tttgttgatg taatcagtgg agacttctag ttttttgcta atatccgcaa tgtttttcac
     4981 tttctcgtcg ccttcaccaa gcttcgaagg cactacacca gcttcggcaa attgaccagt
     5041 agtcgcgagt ggattaccat ttctgtccac tatttgacca cgctctgctt cgtcttccgt
     5101 gatgcgcacc ttatctgttt tcaccattcc ggggaaaatg agagctggtt tccagtcgat
     5161 tttccagtca tcatcttgct tggaaatagt cgttttgtat ttttgtgtag cgagtttccc
     5221 gaggctagtc cgcatttcta gttcgtatgt taagttgaat ttgttttctt tgtcatcata
     5281 gacagatttt agatttttta ctttaatatc ttttgcgcca atcccgtcgt aaacagcttg
     5341 atacttatct tccatttctt tctttgtaaa ttcgactttt ttcaaggatt cacttgagac
     5401 gctacttccc aacttgtcgt acttttcttt agcgatattt gatgtaaaag tttctgcggc
     5461 tgctaaagca tttttttcat ctttgtgttg attttgaatg aaaaagtaaa tggcaatgcc
     5521 tgcgaggacg gcaacagcgg caatgcttcc aatgataatt gcttttttgt tattcctctt
     5581 tttcccacca taactagcca taatacaccc cttaatttca tgttatattc aattaattat
     5641 accaaacact tctaaaaaag ttgaaaaaat taaagaaaac tttagatttg cccgacatat
     5701 ttttttctaa ttcatgtcat aatttgttct tatttgcttg gtaaagtagt ggtaacgaaa
     5761 ggatgatgtt ggatggaaga gatggaacaa ccagaaaaga aggtcattat tcgtgggaaa
     5821 ggcatccaca ataaatggaa gtggagcacg attattgtca gtattctttc tgtcataatt
     5881 attagtgttt taagttatca gctgtattca gttagtcaaa ataccccgga aaataatact
     5941 aatggaacca tgcaaggtcc tggtggaggg gagatgccga gtggaacgcc gccgtccggt
     6001 gaacctggcc aagcgccaaa tagttcagat gatagttctg actctggaac aagtgatagt
     6061 actacaagca gcgacggaac cctttaatat ttgcgagccc tctagaaatc atcattgtag
     6121 ggggcttttt ccaatcttta aaaaatctta tggaattatc gctcctattt tttgtcattt
     6181 tattgtaata tggaagtaag ttacaataaa agaggtgtga aatatggcaa gacatgcaca
     6241 aaaaagaaaa gcgcgcaaag gtagaatttt tgttacgatt cttgtagccc tattaatttt
     6301 agttggtgta gttgcagtta taggttattt ccaatatcaa tctagcttaa aagaagcgca
     6361 aaatgaaagt aaattaaaag actacaaatt caatggtgcc aaagcagttg gcgatgaaat
     6421 caatgtacta cttatcggta gtgactctcg cggtgaagac caaggccgtt cagacagctt
     6481 gatgattgct cattataata cgaaaacaaa tacgccaaaa ctggtatcga tcatgcgtga
     6541 tacatacgta gatattccag gacacggcaa aaacaaaatc aatgcagcat attcatacgg
     6601 cggaccagaa cttgtacgcc aaacgattaa agaaaatttt ggagtagacg tacaatatta
     6661 tgtagtagcc aattttgaag gtttccctaa gattgttgat acacttgcac cagaaggaat
     6721 caaaatcaac gcagagaaag atatgtcgaa aaatattgac gcaaacatta aaaagggcga
     6781 acaagtaatg gatggtaaaa cattgttaca atatgctcgc ttccgtaaag atgcagaagg
     6841 agacttcggt cgaattcgtc gtcaacaaca agtattagaa gctttgaaag aacaggcgat
     6901 tgatgttggt gacgtggcaa aaatcccaga tgttatcgga aaactacaag gttattcttc
     6961 cactaatatc ccaacaggaa cattaatgtc cattggcgca gatttcctac taggaaaaac
     7021 agaaacaatg gaaaaattcg cgattcctgt tgaagggaaa tggcacaatg agcgaattga
     7081 tggagcggga gcagtgcttc gtttagatga tatggctgct aacgcaaaag ctttacaaga
     7141 ttttttgaaa taacaaaaaa acacggaagt cctcattaat aggatttccg tgtttttata
     7201 ttagaatttg tcgttattcc accattttgc aaaagtgttt gggcatactt ttttgataga
     7261 atcttcgtcg tcttcatccc actcaaaatc tattggaggc atagatactt cttcaaactc
     7321 aattctactc tctgcttcat tttcagcatc gtcaaagtct ttccctagtt tgttctcgaa
     7381 aatatccatc actaagtaag ctatctcttc attttcagga tattcatcct ctgttaataa
     7441 atcaaattca ccgcaaagcg tatcggcatt ttccacagca gatgtgaata cagccttacc
     7501 tcttgttatt aaccaataac ggaaatagtc aaatccatca tcactacagc cacctaatac
     7561 tacgtaagca acagcccaga gcgattggtt ataagatttt ttatgaaagt agttccacca
     7621 ataatcataa ccaaaaagtt catcctcact caacttttct agtagttctt ctaatttgct
     7681 gcctttgtca gagttatcaa taattcccca aaactgatct tgggttaata aagatgatac
     7741 ttttttcatt tgattttcct ccagttaaaa gattcatata gtatgtgttt agtgtaacaa
     7801 aattaaaaat catggtgaag cggtattaaa gtatatgtgt gagaaacaca aaatatagct
     7861 gattttagac aggaaattgt cacaaaagcg ttatgaagaa gtggcaagct ggttttaaat
     7921 ttcttttttc gcttcacata gattataatg aatacatatt ttaaaaaggg gtgagacgct
     7981 tcatgaagga caaaacaaag aaaagaaaat ggaactgggc acagattttg gctatttttg
     8041 tattagtaac gctcgtagtt tcgatggttt atgcaacagt taacttaatt acagcaccat
     8101 ctggcaatgt accagaagga caacaaacaa agggcgacta ctcacttatg cttatgcagt
     8161 gtgtacttgg cgtggtagtt ctattcttac catccatcat tagtaaaaaa atgaaattcg
     8221 tcattccgaa tgcgatgtat attgttttta tcgttttctt atattgcgcc atttatcttg
     8281 gcgaagtacg tagtttctat tatttaattc ctaactggga tacgatttta catacgttta
     8341 gtggagcaat gcttggggga cttggttttt ctattgtgag cttactgaat aatgatgaac
     8401 ggattactct ttcgatgagt ccggttttcg ttgcattatt tgcttgtagc tttgctgttt
     8461 tcttgggtgt tttctgggag ttctatgaat ttgcagccga tagctttgga atgaacatgc
     8521 aaaaaacaat gctagaagat ggcacgatgc ttcaaggtca tgcagcagtt gctgatacaa
     8581 tgggcgatct gttcgtcgat ttcctcgggg ctttcgtgat atccatcatc ggctacttct
     8641 ccattcgcaa aaataaaaaa tggatgaaga acttcgaatt taaaaaagta gatgaagaag
     8701 taaaataaaa aactgccaac aaagtgagaa atcattttgt tggcagtttt tttatattat
     8761 tttactttct ctatcaataa acatcatcat aaaggcgata aactgtaaaa atgcacaaac
     8821 gagaatagca tattgtgcga ataactgaat aaagaaattc cctacaaccg caccaatgat
     8881 aaaactaaga ataacggtaa aatatagcaa gctgttacgc aaatattgtt tttccttgta
     8941 ctcgaaataa tcacataagt tttgggtagc gctccgcaaa ttccctatgc acatcgtcgt
     9001 cgcaacccct ctaccatgca tttttcggaa gctttctacc tgaataccac atacaaaaga
     9061 tatgagcgaa ttggcaatca gattatgatc aagtggaata aatgcgaccc caatcaaaat
     9121 taccgcttcg atcaagacag aaagctggcg ccagtgaaga cgcctaatat cacgccgatg
     9181 aatcacttca gatatcgcaa ttccgaccgt aaaagagaca accggccaaa aatactgaat
     9241 tgcgatagcc cagttcccct ccgaaatatt aattccaaat aaaagtatgt tcccagtctg
     9301 cgcattagcg aatacctgac ctctttcaat gtaagagtaa gcatccataa atccgccagc
     9361 cagagcaagt aaaagcccca aaccgattga ttctgaaatt tgtctagatc ttgccatgat
     9421 ttttcatcct ttttttctta tttattaacc atttgttcac gaagagcatc aactagctca
     9481 ttaacttgct caatattttg cagcattttt ttctcaaaat ggtgaattgg aagaaatacg
     9541 ccaagttcat ctgcattttc tgatgtttct tgtccgtaga aaattcggct ggatggaatg
     9601 atttcctgta tatgcaagaa agttttccaa ataaacgcat agacttccga ttcagtcatt
     9661 cctaacttta aagtatcagg aagagaatac agtaccaaaa tccctctttt tttattaatt
     9721 cgtttagtag aaatcgaaaa atctggctcg taggaatgaa tgatatcatc atcatctact
     9781 aagaaaatcg ttgtttcaga atgatgcaaa tccgattgat aaatctcttg aaatttctcc
     9841 tgttcgcggt tagaaatatc gtccttcttg gctataaaat taccttcttt atctgttaaa
     9901 aagaacgggt tatccactgt taatttttta ggaataagga aagcttgtct gagaagttcg
     9961 aataatgttc tcccgcaaac acctaacaac aaggcactta catcactttg cctataagcc
    10021 gacaaaataa ttttagcaaa aagagtatca tctttttcaa aaccacgcgt ctcttggtag
    10081 ctctctaaat tatctagaaa tacatcttta aaacgtctgc aagctgttgg attagccaat
    10141 atctgttcga aaaggggagc gacattttgt tcttttggga aaatagttgt cattttcaag
    10201 tctcctttat tttattcatg ttaacattat cgcatattta cgaagaaaag ataaaaatat
    10261 tacataagaa aaagcgccat gaatattttc ttaggcgctt tttctctgtt tatttagtta
    10321 atcgagctat aacttgttgc acaagctgcg tttcttccgc agttatcact ttttccgtta
    10381 agttattact ataaatttgg gcttcataca ttttcgttag tcgcgaaaat tctgtcgttg
    10441 ttaattcagc atccactctg gtgccaaaat gacgtaacgt ttcactcgat tcgcggacat
    10501 aaccataaga agcaagtaat ttcataagtc tatgataggt tttgccgaat tctggactat
    10561 ttctcagaga acgaagcaat aaataactac gaattctgcg tctgaatata ataactagtg
    10621 cgagcagtgc cacaactagt ccagctggaa tccaccaaac ccaagacgga atttcgaaat
    10681 tagaggccgc tgtttctgtt ttaggttctt cttttttcgg tgtttcacct gtggagctgc
    10741 taccgttatc ttgttctggt gttttatcgg ctgtatttgg tgtttctggc gtactcgtac
    10801 tatcattagg tgtttcaggt ttattagctg tttcagttgt tggttcttgg aagttttcgg
    10861 gattggagaa tgttgctgtt ggctcaaatg gaacccatcc agttcctggg aaaaacactt
    10921 ccggccaaga atgtgcattg ttatttgtga ttgtataagt cgttttagca tcattttctt
    10981 ttttctcacc ctcaccaggt gtgtagccct tggcccatct tgctggaatc ccaagcgatc
    11041 gaagcatgac taccatggaa gtagaaaaat tgtcacaata cccaatttgc gtttcaaata
    11101 aaaattgatc gacataatcg gctcccctag gcgtttcttt cgcatcctct gtactataag
    11161 taaaggtgcc agaagcgctt aaatagcgtt cgattgcttt cgttttgtca taaattgaat
    11221 cagcgtcttt tgttacttta ttggcaagtt ttgtcacccg gtctggtaag tcttttggtg
    11281 tttgggtata ttgggaaaca aaagcgttag aaagtgtgct aaagtcggca ttctgcattt
    11341 tttcaatatt ataaacgggt gtttttaatt ggaccgtata atttttgatt gtatccactg
    11401 gtccaacccg ctcaatggtt aaattggcac taaatgaatc tactgcgcca ttaactgttt
    11461 gcgttccata tggataaggc atgtaatcat tagaagaagc aaagctaatt tcggccgtgt
    11521 ttgtagcacc agttgtttgt tctgtaagtt gaatagggaa attatcaccg gaagaaaaag
    11581 atatgacatc cgcggaattt gcatttgccc agccagtgcc agtatagacc gttttcgatt
    11641 ctacacgcca gtaatgccct ttttccgccc gggccgtgaa tacagtagca ttatcctttt
    11701 tgagagcacc accaagtgtc gtatcatctt cactataacc caccgtgcgc gttgtattaa
    11761 ttccaagcgc attttttatc gtcggtaccg gatcagggaa aatcggtgct tttttcggaa
    11821 gcattaacga actaaaaaca aatacggcca gtaacaaaat cacaaaaata tgataaaaca
    11881 aaccattacg ttttaaggag tccgcgctaa ttctatttgg tgctgcaatc cgacttgcca
    11941 gtgcaagatg aagtaataaa aatccttcta atacagttcg gacgatggcc caattactgt
    12001 tataatctgt aaaagtatta ataaccgcta aataagcaac agttaaaact aaaacactca
    12061 taacccgctg tttgcgcaga atactataag tagtaatata actcaaaagc cataaagcaa
    12121 ttaaaaaaac gattaaaata aagtccatag aaatatcgga cgagcgaaac tgtaccatat
    12181 ctctaaaccc attaaaggtg atttggaaaa aagaaacaaa ccaattccct gccaaaatcc
    12241 cacctttagc gtagtaaatt cctgaaacga agataatcat cacgatatga agcgggattg
    12301 tccaataata tttcaaacgg aggaaaaaac taccgagtga aagggttata aacaaaataa
    12361 tccagtttgc tgtagagagt tcggtcagct ctgcgaatgg ataaatccac tcagagataa
    12421 gcaaaacaga tagaataaat agcatgacga gcgttaaata tcttttcatt tagcttcacg
    12481 ctcccatctg cttagaagac ttgctggctc aaggaaaatc gctggagcat ccatcgcttt
    12541 agaatgctct gattgaaaag taatgatttg gagctgttta ttatccgtta aacgagtcac
    12601 tttttgcatt aacatcgtat caatacatgg cgtgaataga aggattttct ctccagaatg
    12661 taaattacta tcaagcgatt cttgcagcgt taaactatct accggggcga tttctgcaaa
    12721 agcagtcgat atatcttgaa gtctactcgt acctttcgcc ggagcaaatt tacttgtttg
    12781 atcgcctaaa agagtaacac gaatttctcc attatcttcg gagattttgc gaataaacga
    12841 gtaagccgcc cgaagtgata attcaaaatt gggatggctc gctccgtaaa aaatgacgga
    12901 taaccgtgat gttgcactat tttcaaattc tctagtcatc agttggtcgc ttttagcaga
    12961 agatttccag tcaataagag aaatccggtc accagaagaa aattcgcgta aactgtgtaa
    13021 attgctgttt ttcttaagcg tccaataagc ggcattgcgt tcgttttctg gagaagcttc
    13081 actgattttt tctaatacat ccggaaaata ggttggataa atagtgagcg atttttcgga
    13141 agatagttgg cgcgaacgtt ctaacaagcc gaaagcatca ctagtttcta catccactgg
    13201 cggaaatgaa tgaatcccac gaacgcctac aaatccagct agtgtaaccg tgaaatgctt
    13261 tttaaaaagc ggataaacca cttgttggcg ggcgctcaca ttgccaaaac tagcgggtat
    13321 tttttgttgg aatagcaaat aacccaccgg ataacgcgat tttcgagtga atgatacttg
    13381 catatcaact aaatcgccat catgataggt atttttaaca aaacgccgat tcactttcca
    13441 cgcttttagt ggataaatcg aggacaaaaa taaaagtaac aggataaaac taaagaaata
    13501 ggttaaaaac cagctagcag tatcaccttg aaataacgta taagtccaaa gcccagcgta
    13561 aataattagc ataataatcc accgaaatgc taataggagg cgttttttca acatttagct
    13621 acctcttttc taccggaact gacgtgtttt tcaaaatgga agcaataatg gattcggctg
    13681 tttcctcatt ataataagct tcagacttca aaatgagacg atgagtgaaa atatacggtg
    13741 ctaaatactg aatatcatca ggaatcacat aatctcgacc ttcaataagc gcaaaagctt
    13801 gagcggcttg catgaaagcg agcgagccac gcggactaat tccgagcgca acggaagggt
    13861 gttttcgagt cgcatcaact aggcgaataa tataattttt taaaacatca tcaataaaga
    13921 cttgctttgc tttgtttttt aggtccagta attcgctgag tgtcaccact tgctgcgttt
    13981 gatcaagtgg atcttggtat tgttttaatg taagcagctg catttcttct tcgactgtcg
    14041 ggtaaccaat attaattttg agtaaaaatc ggtctaattg tgcttctgga agggcatacg
    14101 ttccttcgta ttcaatcgga ttttgcgtcg ccataacgaa aaatgggttg gcaagtttgc
    14161 gcgtaatacc atccactgtc acactattct cagccatacc ttcaagtaaa gcggcttgag
    14221 ttcgaggcgc agtacgatta atttcatccg caagaacaat atttcccatg acaggacctg
    14281 gacggaattc aaaatcacgt gtttcaggat tgaaaatcga aacccccgtc acatctgcgg
    14341 gaagtaaatc tggtgtaaat tgaattcgtt taaaggaaac accaattgtt ttagaaaggg
    14401 tgcggaccat catcgtttta ccaacaccgg gaacatcttc taataatacg tgaccacccg
    14461 caagtagggc agttaagctt aatttaacaa catgtcgttt accgacgatt actttttcaa
    14521 cttcattaat aatttcttct attttaatgg atggctctat agacataatt tgcctccgtt
    14581 tcttttctta tgtttttaat cagaatatgt ttattcatgg ttcaatgcta ctataatagg
    14641 ccttgaatgt aaaagattta acgtggcatg gactttttct aggagattgt ttacacttag
    14701 aataactgga ggtggcgaac tttgagcgta aaattggcag atttaatgaa attaccatct
    14761 ttaaaagaag cgaaagtagt ctctggaaaa tctggattat ctaagcttgt ttcgtctatt
    14821 tctgttttag aatatacaga ggtagctctt ttagaagatg atttatttga taatgatgaa
    14881 ttttatggca gtgaaatagt tgtatcggct tttgtgaata ttcgtgacga tgttgaggca
    14941 cagtgtcgga caattgagcg attacataag gttggcgaag ttgctttaat tctttactac
    15001 gtgggaattt ttgtgccgaa aatggatcaa aaactgattg attttgcaaa tgaacttgat
    15061 tttaccatta tcgtgatgcc ggaaaacgag atgtcactta gatatagcga agtgatttat
    15121 gaagtagtcg aagcgattgt gaagcaagaa atgacagata ccaactttgt aaccgagtca
    15181 ttagaacaga tttcgagtgt gcgaccgcca caacgaaata tagataccac actgaaaatt
    15241 ttgtctgata gaacgcatac ttcgctcgtc ttaacggata attctttcca agtaattaat
    15301 tctatcactt ggccacgaac gcgccactgg gattttgaac ggataattga ggcatctaaa
    15361 caaatcggtg aacatgagct tgtacagctt accttggatg aacgcgattt ttatacggcc
    15421 agaaaaccga tttttcaaga cggtatgcaa gcgatgcact tatttatgat gaaagaaaaa
    15481 ggcgtattaa cagccgatgt agtcatgcaa attaccgaag tagtccaagt atttatgaat
    15541 ttatggggca gaaactatgt cgaaatcagt acagctgaac tgatgaaagc cattttaaat
    15601 gatgaaagtg tcaaaatgcg gcgacttggt aagattttaa atgtggatgt ttcttctatt
    15661 aaatggatgt ggcttgtaaa aaccgaagaa attcgcgaca atgagcaagt tttagctgaa
    15721 ctgaaaagtt ttgtagctag tcacttccaa gtttcattaa ttgatttatt tgaagacaat
    15781 atcgttgttt tacttgataa ttcagtggcg cagcgggacc ggacgcatac agccaatgag
    15841 tttgcgatga tgatgaaaga acatgggata gacttgaaaa ttaccgtttg ccaaggaatg
    15901 gagcaaacgt cagatgtgca aagcgcttat tcgctcgtta atgaatataa aaatgcggca
    15961 aatgcgattt atgcgaacaa gtccatttat tctcttcaag aaattgattt cgcagcaaaa
    16021 tgtgtggaaa tagtagatcg aggagaacta gcaattgcag aacaaatgag gccactaaag
    16081 cctttagagg ataatgatga actaattgaa acgctgtctg tgtttttact ggaaggtgaa
    16141 tccaattata atcaagcagc tgaactacta ttcctgcata aaaatacgat taaatatcga
    16201 atacaacgga taaatgagtt attgcaatat ccggcgacta aaatcccaga atcctacaac
    16261 ctttatttag cagtggcgat tcgacggatt cttggtggaa ataacaataa taaataaaaa
    16321 t
//
LOCUS       DABQVC010000047        16101 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.047,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000047 DABQVC010000000
VERSION     DABQVC010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16101
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.047"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            180..731
                     /gene="pyrR"
                     /locus_tag="IBJ56_001078"
     CDS             180..731
                     /gene="pyrR"
                     /locus_tag="IBJ56_001078"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HAM3417337.1"
                     /translation="MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGI
                     YLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKV
                     VLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGN
                     ERVEVRLTDVDNEEDAVIINKNE"
     gene            860..2146
                     /locus_tag="IBJ56_001079"
     CDS             860..2146
                     /locus_tag="IBJ56_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HAM3417338.1"
                     /translation="MTETTETVTKPVLDIHERPSFNKWIILSIQHLFTMFGSTIFVPS
                     VTGLSPGVALVSSGLGTLAYLGITRGKIPAYLGSSFTFIAPITALLAAKSGGGPGAVM
                     VGTFSVGVVYAIVSLIVYYAGVDWIQKVLPPIVVGPVIMVIGLSLAPSAAAMAMGTNN
                     GKYSLETLAVAVITLLATIIAMMFFKGFMGLIPILFGFTVGYLTSMAFGMVDYTLIKN
                     ASFFQIPDFSIPFVNIDPVITVTVILSMAPLAFVTMAEHMGHQLLLNRITNKNFFKDP
                     GLHRSLLADGTASIIASFIGGPPVTTYGENIGVLAITKVYSVFVIGGAAVFAILFGFI
                     GYINAVITSVPTAVLGGISLLLFGVIATSGLRMMIENKIDLSVNRNMIIASVVLVVGI
                     GGLFIKAGTFELSGMALAAVIGIILNLVLPAEHRSA"
     gene            2227..3138
                     /locus_tag="IBJ56_001080"
     CDS             2227..3138
                     /locus_tag="IBJ56_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HAM3417339.1"
                     /translation="MKNLLSMEALTVHEIEHLLEQAAQFKRGKKATFNEQTFAVNMFF
                     EPSTRTHTSFEVAEKKLGVEVVSFDAASSSMTKGETLYDTLLTMQAVGVNVAVIRHSE
                     ENYYAGLEKLDIAIVNGGDGCGEHPSQSLLDLFTIKEQFGTFQGLKVAIAGDIRHSRV
                     ANSNMKVLKRLGAELFFSGPREWFDESYLAYGTYLSVDEIVEKVDVLMLLRVQHERHS
                     GTDEFTKESYHEKFGLTENRAKQLKEDAIIMHPSPVNRDVEIADSLVESEKSRIVTQM
                     TNGVFIRMAILEAILKEQEMRAKLCTY"
     gene            3126..4406
                     /locus_tag="IBJ56_001081"
     CDS             3126..4406
                     /locus_tag="IBJ56_001081"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HAM3417340.1"
                     /translation="MYVLKNGQVLNASGELENKDVLIQNGKVNLIADSIEVTSGEEFD
                     ATGKLIAPGFIDVHVHLREPGGEHKETILTGTQAAARGGYTTICSMPNTKPVPDSKEV
                     MESLQAKIKETAKVRVLPYASITTSLGTDELVDFEALKEAGAFAFTDDGVGVQLAGTM
                     YEAMKRAAALDMAIVAHCEDNSLIYGGVVHDGIFAEKEGLKGIPNIAESVQIARDVLL
                     AEAAGCHYHVCHISTKESVRVVRDAKRAGIRVTAEVSPHHLILDEEAIPGNDGNWKMN
                     PPLRSKEDRAALLEGLLDGTIDFIATDHAPHAAEEKNVPMEQAAFGIVGLETAFPLLY
                     THFVKTNEWTLKQLIDWMTVKPAECFKLPYGKLEEGSVADIVVLDLEKEANIDPATFY
                     SKGKNTPFVGETCIGWPVATFSEGTLVYNEGEIK"
     gene            4403..5494
                     /gene="carA"
                     /locus_tag="IBJ56_001082"
     CDS             4403..5494
                     /gene="carA"
                     /locus_tag="IBJ56_001082"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HAM3417341.1"
                     /translation="MTKRILMLEDGNYFIGDAIGSEKETIGEVVFNTGMTGYQETITD
                     PSYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFPSNWRNQITLDDFLK
                     EKGIPGIAGIDTRKLTKLIRKEGTLKGILAAETANKEELLHHLRSVRLPVDQVHEVSS
                     AKAFASPGDGKRVVLVDYGVKSSILRELNKRNCYVTVVPYNTTAEEILAMHPDGVMLS
                     NGPGDPKDVPEALEMIRGIQGKLPLFGICLGHQLFALANGADTFKLKFGHRGANHPVK
                     ELATGRVDFTAQNHGYAVEKDSLIGTDLKVTHIELNDETVEGLAHKEYPAYTVQYHPE
                     ANPGPSDVNYLFDEFMEMMNGKEEGELHA"
     gene            5487..8699
                     /gene="carB"
                     /locus_tag="IBJ56_001083"
     CDS             5487..8699
                     /gene="carB"
                     /locus_tag="IBJ56_001083"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HAM3417342.1"
                     /translation="MPKRDDIKTILVIGSGPIVIGQAAEFDYAGTQACLSLKEEGYRV
                     VLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPTLGGQTGLNMAMEL
                     SAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDIIHNLDEAYTFVE
                     RIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKSIAGFKEVEY
                     EVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVSLKIIRALE
                     IEGGCNVQLALDPDSYNYYVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEV
                     RNPVTGTTFAHFEPTLDYVVAKIPRFAFDKFEQADRRLGTQMKATGEVMAIGRSWEEA
                     LLKAVRSLEIGADHLLLEEAENADEATLERKICFPEDDRLFFLAAALRRGQTIEQLHA
                     KTKIDLFFLYKLSKTIELENRIKENPQNQEILAEAKRAGFSDAFLATCWNVDEQAIYD
                     LRKAQNLFPVYKMVDTCAAEFESTTPYFYSTYEEENESTRSAKESVIVLGSGPIRIGQ
                     GVEFDYATVHSVWAIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEI
                     EQPLGVVVQFGGQTAINLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQP
                     AGKTATSVEEAINVATDIGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKH
                     PVLVDRYVSGQEVEVDAISDGENVLIPGIMEHIERAGVHSGDSIAVYPAQRLSSQVKN
                     TIVDYTTRLATGLNIIGMLNIQYVVDGEEVFVIEVNPRSSRTAPFLSKITEIPMANVA
                     TRVILGENLIDLGYTPGLAPEKQEIFVKVPVFSFAKLRSVDTSLGPEMKSTGEVMGKD
                     VTLEKALYKGFVASGTTMHDYGTVLLTVADRDKEEAVELAKRFNRIGFTIMATKGTAS
                     TLEEADIPVSQVKKIGENQETLIDYIRNGQVTLVVNTLTTGKRPERDGFQIRRESVEN
                     GIPVCTSLDTAEAILRVLESRSFELESMNTSEVKQPKARV"
     gene            8722..9486
                     /locus_tag="IBJ56_001084"
     CDS             8722..9486
                     /locus_tag="IBJ56_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HAM3417343.1"
                     /translation="MLQTEMKVIQQTEIADKVYELILTGERVADMSPGQFLMLKPSRS
                     DLLMRRPISICSYDKTAKTCILLYRVEGDGTRDFSKLSEGDTIDVLGPLGKGFDIDQT
                     PAPKTALLIGGGIGVPPMYQLGKELAGKGVQVTFVNGFQSAKDSFYEKEMNAYGTVHI
                     ATVDGSLGTQGFVTDITNNFPEEPDVIYSCGPKAMLQAVKASFPETKTYLSLEERMAC
                     GIGACYACVCPKADDAKKQFKVCEDGPVFRADEVSL"
     gene            9483..10397
                     /locus_tag="IBJ56_001085"
     CDS             9483..10397
                     /locus_tag="IBJ56_001085"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HAM3417344.1"
                     /translation="MNRLAVEIPGLSLKNPIMPASGCFGFGQEYSKYYDLNELGAIMA
                     KAVTPEPRLGNPTPRVAETASGMLNAIGLQNPGLEHVLAHELPFLEQFETPIIANVAG
                     ATEDDYVQVCARIGESKAVKAIELNISCPNVKHGGIAFGTDPDVAHRLTKAVKNVATV
                     PVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLGMRIDLKTRKPIIANGTGGLSGP
                     AIKPVAIRMIHQVREVSNIPIIGMGGVQTVDDVLEFLIAGADAVAVGTMNFTDPFICP
                     KLISELPKRMDELGISSLQELKKERTNQ"
     gene            10394..11095
                     /gene="pyrF"
                     /locus_tag="IBJ56_001086"
     CDS             10394..11095
                     /gene="pyrF"
                     /locus_tag="IBJ56_001086"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HAM3417345.1"
                     /translation="MNKPIIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPII
                     VEKIKQQHHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAREGLE
                     IGSSSGKRPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSA
                     LEAEDIKQQNGADFLRVTPGIRLASDAADDQIRVVTPEKARLIGSSNIVVGRSITRAN
                     DPVEAYNQVLKEWNA"
     gene            11092..11721
                     /locus_tag="IBJ56_001087"
     CDS             11092..11721
                     /locus_tag="IBJ56_001087"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HAM3417346.1"
                     /translation="MSIEKQVAEQLLEIKAVFLKPNEPFTWASGIKSPIYCDNRLTLG
                     FPKVRQFIAKSLAEKIKQTFGEVDVVAGTATAGIPHAAWVSDLLDLPMVYVRSKAKEH
                     GKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAGAEVVGIAAIFTYGLAKGK
                     QLLEESGTKLVTLTNYDELIEVALNENYVTGEDMETLKEWKKNPENWGK"
     gene            complement(11761..12360)
                     /locus_tag="IBJ56_001088"
     CDS             complement(11761..12360)
                     /locus_tag="IBJ56_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short chain dehydrogenase"
                     /protein_id="HAM3417347.1"
                     /translation="MKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITSVD
                     SIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGINSLN
                     DNGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNILEES
                     WDKLESFFQGFVPVPAAKVARAFEKSVFGAQTGESYKVY"
     gene            complement(12448..14160)
                     /locus_tag="IBJ56_001089"
     CDS             complement(12448..14160)
                     /locus_tag="IBJ56_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin/fibrinogen-binding protein"
                     /protein_id="HAM3417348.1"
                     /translation="MAFDAMFLKAMTEELAEHGESGRIMKIHQPFSHELVLYIRKNRE
                     NKRLLISSHPSYARIQWTDDIPENPATPPMFCMLLRKYLEGAIIESITQLPNERILQF
                     SIRGKDDIGENRFCDLFVEIMGRHSNITLVDRAKNVIVDCIKHVSPAQNSYRTLLPGA
                     TYVLPPATDKLHPFEVTSEQILDRLDFSAGRMDKQLVQNFAGFSPLLAREIVFRAGNL
                     TADSLVAAFFEVIGLVNEHLGHAAVPNEWRIQNKEDYYFFPLRHVDAETTEFANLSTL
                     LDHFYIGKARRDRVHQFAHDLEKLLSNELARSRLKIEKLENTLLETEKADVYRIQGEL
                     LTANLHLMERGMEEITVENFYDDMKKMTIALDTRKTPSANAQSYFSRYQKLRNAVEVV
                     KEQIALTKEEITYLESVESQLETSGPQDVEEIRQELAEQGYLRYKQKKGSRKKATLPA
                     PEKYTSSTGLTILVGKNNKQNDYLTNKLARNNEYWFHVKDLPGSHVVIQSNDPDETSI
                     TEAAMIAAYYSKARLSATVPVDGTLVKHVKKPNGAKPGYVIYDNQTTYFVTPDEKLVL
                     ELKN"
     gene            14317..15192
                     /locus_tag="IBJ56_001090"
     CDS             14317..15192
                     /locus_tag="IBJ56_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HAM3417349.1"
                     /translation="MVKSMTGFGRATKEFEAFKVTIELKAVNHRYSEFLFRMPKQLAY
                     LEGKLKKIISKQIKRGRIEVFFSITGEQITKRELHIDWDLADSYYRFIKQASARYELQ
                     ELPTMADLLQEQAYLSIEEEVEASSELERLVLETLARATERLDEMRSMEGAELLLYFK
                     QHLTALEKSLEIIQAEIPNTEKHYQEKIETRLQNVVGDQFDPSIVLTEVAMLLEKADI
                     NEEVERTKSHLKQFYGIILLEEPIGRKLDFLIQEMNREVNTIGSKASSLKITEQVVEM
                     KTTLEKIREQVQNVE"
     gene            15211..15828
                     /gene="gmk"
                     /locus_tag="IBJ56_001091"
     CDS             15211..15828
                     /gene="gmk"
                     /locus_tag="IBJ56_001091"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HAM3417350.1"
                     /translation="MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLP
                     REGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLE
                     IEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMM
                     ASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ"
     gene            15828..16031
                     /locus_tag="IBJ56_001092"
     CDS             15828..16031
                     /locus_tag="IBJ56_001092"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HAM3417351.1"
                     /translation="MLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQS
                     DKFVGKALEEIHAGKLVLQNDDK"
BASE COUNT         5089 a         3047 c         3660 g         4305 t
ORIGIN      
        1 tttgattgac aaggagagtt ctatcagtta agataagtct aatgaaataa agtcctttaa
       61 catagtccag agaggctaag aaggtgacga taatttgacg ggttaattgt atactcgtac
      121 gcgttccctt gcttacactg gcagagggtt atttttttgc acaaaaggag agatttcgga
      181 tgcaaaaaca agtagttgtc atggacgagg cggcaatcaa acgtgcgctc actcgagtaa
      241 gttacgaaat catcgagcgg aataaaggca cgaagaattt agcgcttgtc ggtattaaga
      301 cgcgtggtat ctatcttgca gagcgtttgc ataagcgtat acttgaaatt gagggtattg
      361 atgttccagt tggagatatt gatattacac tttaccgaga tgatttatct ttcaaagatg
      421 ataagactcg cgaacccgct gtacatggga cgaacattcc attcgatatt aatggaaaaa
      481 aagtcgttct tgtagatgat gtgctttata caggtcgaac tgtgcgtgcc gcaatggacg
      541 cattaatgga tgtaggtaga cctgcgcaaa ttcaccttgc agtgcttgct gatcggggcc
      601 atagagagct accgattaga gcagattatg tagggaaaaa cattccgaca tcaggaaacg
      661 aacgagtaga agttcgccta accgatgtgg acaacgaaga agatgcggtt attattaaca
      721 aaaatgaata acaatgtaac acttttttaa aagcagtcct gtgaggctga caaagagtga
      781 ttaatttcta taggggatta ttctatactc tttgtcgaca cagacaaggg gtatttttta
      841 tgaagaaaga gggaagaaaa tgacagaaac gacagaaaca gtgacaaaac cagtactaga
      901 tatacacgaa agaccaagct tcaataaatg gattattctt agcatccagc accttttcac
      961 catgtttggc tctactatct ttgtgccaag tgtgacaggg ttaagtccgg gagtggcgct
     1021 tgtatctagc ggactcggga cacttgctta tctaggaatt actcgcggga aaatccccgc
     1081 atatctaggt tcttccttta cctttattgc accaattact gcactacttg cagcaaaatc
     1141 tggcggaggt ccgggcgcag ttatggtcgg aacgttctcc gtcggtgtag tatatgcgat
     1201 tgtttctcta attgtttact acgctggtgt tgactggatt caaaaggttt taccaccaat
     1261 tgttgttggg ccagtaatca tggttatcgg tttgtcgctt gctccaagtg cagcagcgat
     1321 ggcgatggga acaaacaatg gtaaatacag tttagaaact ttggcagtag cagtaattac
     1381 gctccttgca accataatcg caatgatgtt tttcaaagga tttatgggct tgattccaat
     1441 tttgttcggc ttcacagtcg gttacttaac aagtatggct tttgggatgg tagattacac
     1501 gttaatcaaa aatgcctctt tcttccaaat tccagatttc agcattccat ttgtaaatat
     1561 cgacccagta attaccgtga cggtcattct aagtatggcg ccacttgcgt ttgtcacaat
     1621 ggcggaacat atggggcatc aattactact taatcgaatt acgaataaaa acttctttaa
     1681 agacccagga cttcatcgtt ccttacttgc agatggtacg gcttcgatta tcgcatcgtt
     1741 catcggcgga ccacctgtaa cgacttacgg tgaaaacatt ggcgttcttg caattacaaa
     1801 agtatatagc gtgtttgtta tcggaggagc ggcagttttc gcaatcctct tcggatttat
     1861 cggttacatc aatgcagtta tcacctcggt tcctacagca gttctaggcg gcatttccct
     1921 gttactcttt ggggttattg caacgagtgg acttcgaatg atgattgaaa ataaaattga
     1981 tttaagtgtt aatcgtaata tgattattgc ttcggttgta ctagtagtcg gaattggcgg
     2041 cttattcatt aaagctggaa cgttcgagct atctggtatg gcgctcgcgg cagttattgg
     2101 gattatctta aacttagtat taccagccga gcacagatca gcataacaca tgacaaaaaa
     2161 acctctgcag acaaaaaatt tacagaggtt tttctataaa atgaagtaga aaaggtggcg
     2221 ctttaaatga aaaatttgtt gtcaatggaa gcattaaccg tccatgaaat cgagcattta
     2281 ttagagcagg cggcacagtt taaacgcggg aaaaaagcga cttttaatga acagactttc
     2341 gcggtcaata tgttttttga accaagtacg agaacacata cgagttttga agtagcagag
     2401 aaaaagttag gtgtggaggt tgtttctttt gatgcagcga gctctagcat gacaaaagga
     2461 gaaacgctct acgatacact gctcacaatg caagccgtcg gggtcaatgt cgcagtgatt
     2521 agacactcag aagaaaatta ctatgcggga ctcgaaaaat tagacattgc tattgtgaac
     2581 ggcggtgatg gatgcggtga acatccgagt caatcactac ttgacttatt tacaataaaa
     2641 gaacaatttg gtacttttca gggtttgaaa gtagcgattg ctggtgatat tcgtcacagt
     2701 cgagttgcca attccaatat gaaagtgtta aaaagacttg gtgcggaact gtttttctcc
     2761 ggaccgagag aatggttcga cgaaagttac ttagcatatg gcacttactt atcggttgat
     2821 gaaattgtgg aaaaagtgga tgtgttgatg cttttgcgtg tacaacatga gcgccatagt
     2881 ggaacagatg agtttacgaa agaaagctac cacgaaaaat ttggattgac ggaaaatcgg
     2941 gcaaagcagt taaaagaaga tgcaatcatt atgcacccaa gccctgtgaa ccgagatgtg
     3001 gaaattgctg atagtttagt agaaagcgaa aaatcacgca ttgttacgca aatgacgaat
     3061 ggcgttttta taagaatggc cattttggaa gctattttaa aagaacagga aatgagggcg
     3121 aaattatgta cgtattaaaa aatgggcaag tattaaacgc gtcaggtgaa ctggaaaaca
     3181 aagatgtact tattcaaaac ggtaaagtca atttgattgc ggattccatt gaagtaacaa
     3241 gcggcgagga atttgatgcg acagggaaat taattgcccc aggttttatc gacgtccatg
     3301 tacatcttcg tgagccgggc ggggaacata aagaaaccat tttaacagga acacaagcgg
     3361 cggcacgcgg tggctatacg acaatttgtt cgatgccgaa tacaaaacct gttccagatt
     3421 ccaaagaagt aatggaaagt ttacaagcaa aaattaaaga aacagcgaaa gttcgcgtgt
     3481 taccatatgc ttcgattaca acaagccttg gaacggacga attagttgat tttgaagctt
     3541 taaaagaagc tggtgcattt gcttttacag atgacggggt aggcgtgcag ttagctggaa
     3601 caatgtatga agcgatgaaa cgagcagcag cactagatat ggcgattgtg gctcactgtg
     3661 aagataactc acttatctat ggtggcgttg tccatgacgg gatttttgct gaaaaagaag
     3721 gtctgaaagg tattccgaat attgctgaat ctgtccaaat cgcacgtgac gttttactag
     3781 cagaagctgc aggttgtcat tatcatgtct gtcatatttc aacaaaagaa tctgttcgtg
     3841 ttgtgcgaga tgcaaaacgg gcgggaattc gtgtcactgc tgaagtttca ccacatcact
     3901 taattttaga tgaagaagct attccaggaa atgacggtaa ttggaaaatg aaccccccac
     3961 ttcgcagcaa agaagatcgg gcggcacttt tagaaggctt actggatggt acgatagatt
     4021 ttatcgcaac tgatcatgct ccacacgcag cggaagaaaa aaatgtaccg atggagcaag
     4081 ctgctttcgg aattgtaggt ctagaaacgg cattcccatt actatatacc cattttgtta
     4141 aaacgaacga atggacatta aaacagctaa tcgactggat gactgtaaaa ccagcggaat
     4201 gctttaaact cccatacggg aaattagaag aaggcagcgt agctgatatc gtcgtacttg
     4261 atttagaaaa agaagcgaat attgacccag ctacttttta ttcaaaagga aaaaacacac
     4321 catttgtagg agaaacgtgt attggatggc cagtagcaac gttttcggaa ggcacacttg
     4381 tatacaatga gggggaaatt aaatgacaaa gcgaatttta atgctagaag atggcaatta
     4441 ttttatcggt gatgcgattg gtagtgaaaa agaaaccatt ggtgaagttg tcttcaatac
     4501 tggaatgact ggctaccaag aaacaatcac tgacccttcg tactatggtc aaattattac
     4561 ttttacgtat ccacttgttg gaaattacgg tgtgaaccgc gacgattttg aatctatcaa
     4621 tcctgctgtg aaaggggttg tggttcgtga agctgcagaa ttcccttcca actggcgcaa
     4681 tcaaattact ttagatgatt ttttgaaaga aaaaggcatc ccgggaatcg cgggaattga
     4741 tacgcgtaaa ctaacgaaac taattcgtaa agaaggaacg ttaaaaggca ttttagcagc
     4801 agaaactgca aacaaagagg aattgctaca ccacttgcgc tctgtacgtt tgccagtcga
     4861 tcaagtacat gaagtttcct ctgctaaagc atttgcaagc ccaggagatg gtaaacgagt
     4921 ggtgcttgtt gattatggtg tgaaaagttc aattttacgg gaactgaata aacgtaactg
     4981 ttacgtgacg gttgttcctt acaacacaac agccgaagaa attcttgcaa tgcatccgga
     5041 tggcgtgatg ttatccaatg gacctgggga tccgaaagat gtgccagaag cattagaaat
     5101 gatacgcggc attcaaggca agctcccact attcggaatt tgcttagggc accaactgtt
     5161 tgcacttgcg aacggagcag atacatttaa actgaaattc gggcatcgtg gcgcgaatca
     5221 tccggtgaaa gaactagcca ctggacgtgt tgatttcact gcacaaaacc acggttacgc
     5281 agtagaaaaa gattcactta ttggaacaga tttaaaagta acacacattg aattaaatga
     5341 tgaaacggta gaagggctgg cacataaaga atatccagcc tatacagtac aatatcaccc
     5401 agaagcaaac ccaggaccaa gtgacgtcaa ctacttattt gatgaattta tggaaatgat
     5461 gaatgggaaa gaggagggtg aactacatgc ctaaacgtga cgatataaaa acaattctag
     5521 taatcggttc tggcccaatt gttattggac aagcagcaga gttcgattat gctgggacac
     5581 aagcatgcct gagtttgaaa gaagaagggt accgggtagt tttagtgaac tcaaatccag
     5641 cgacaattat gacggatgca gaaatggcgg acaaagttta cattgaacca attacgcttg
     5701 attttgtatc gcgcattatt cgtaaagaac gtccggacgc cattttgcca acgcttgggg
     5761 gacaaacggg attgaacatg gcgatggaac tttcagctgc tgggattttg gatgaatgta
     5821 acgtagaagt gttaggaaca gatttaacgg cgattaaaaa agcggaagac cgtgaagctt
     5881 tccgggactt gatgaatgaa ctaggggaac cagtgccaga aagtgacatt attcataatt
     5941 tggacgaagc gtatactttt gttgaacgta tcggctaccc agttatcgtg cgcccggcat
     6001 atacgcttgg tggttctggc ggcgggattt gccacaatga acaagaatta attgaaacgg
     6061 tgacaagtgg tctaaaactg agtccagtaa cacaatgttt actagaaaaa agtatcgctg
     6121 gttttaaaga agtggaatat gaagtaatgc gtgatgcgaa caataacgca atggttgttt
     6181 gtaacatgga aaatattgac ccagtcggca tacatacagg agattcgatt gttgtcgcac
     6241 caagccaaac gctttccgac cgcgaatacc aattgttgcg cgatgtgtcg ttaaaaatta
     6301 tccgcgcact agaaattgaa ggcggctgta acgttcagct ggcacttgat ccagatagtt
     6361 ataattacta tgttatcgaa gtaaacccac gtgtgagccg ttcctctgcg ctagcttcca
     6421 aagcgaccgg ctacccaatt gccaaacttg cagctaaaat cgcagttggc ttaacactgg
     6481 atgaagtgag aaatccagta acaggaacaa cttttgccca tttcgaacca acactagatt
     6541 atgttgttgc gaaaatccca cgctttgctt ttgacaaatt tgagcaagcg gatcgtcgcc
     6601 ttggaacaca aatgaaagca actggtgaag tcatggcaat tggccgttca tgggaagaag
     6661 cacttctaaa agcagtgcgc tccctagaaa ttggcgctga ccatttgttg cttgaagaag
     6721 cggaaaatgc tgacgaagca acattagaac gcaaaatttg cttcccagaa gatgatcgtt
     6781 tattcttcct agcagcagct ttgcgccgag gtcaaacaat cgaacaactc cacgcgaaaa
     6841 caaagataga tttattcttc ttatataaat taagtaaaac aatcgaactg gaaaatcgta
     6901 tcaaagaaaa tccgcaaaac caagaaattt tggcagaagc gaaacgggcc ggtttttctg
     6961 acgctttcct tgccacttgt tggaatgtcg atgaacaagc gatttatgac ttaagaaaag
     7021 cacaaaatct tttcccagta tacaagatgg ttgatacgtg tgcagcggaa tttgaatcga
     7081 caacccctta tttttacagc acatatgaag aggaaaatga gtcaacacga tcagcgaaag
     7141 aaagcgtgat tgtccttggt tctggtccga ttcggattgg gcaaggggta gaattcgact
     7201 atgcaacggt gcactccgtg tgggccattc aacaagcagg ctatgaagca attatcatta
     7261 ataataaccc agaaaccgtt tcgaccgact ttagtatctc ggacaaactt tactttgagc
     7321 ctttgacgct agaggatgtt atgcacgtta ttgagatcga acagccacta ggggttgtcg
     7381 tgcaattcgg tggacaaaca gcgattaatt tagcagacgg tttagcaaaa cgcggcgtaa
     7441 aaattttagg tacaagttta gaagatacgg accgcgcaga aaaccgtgat gcctttgaaa
     7501 aagcattaga aattctacaa attccacaac cagctgggaa aacggccaca tcggtagaag
     7561 aagcaatcaa cgtagcgaca gacatcggct atccggtcct tgtacgccca tcttatgtac
     7621 ttggtggtcg agcgatggaa atcgtagaat cagaagaagc attaaaacat tatatgacga
     7681 atgcggtaaa agtaaatcca aaacacccag ttttagtaga ccgttacgta agcggccaag
     7741 aagtagaagt agatgcaatc agtgacggtg aaaacgtctt aatccctggt atcatggaac
     7801 atatcgaacg tgcgggagtt cattcaggtg actcgattgc cgtatatcca gcgcaacgtt
     7861 taagcagtca agtgaaaaat acgattgtcg attatacgac aaggctggca actggcttaa
     7921 acattatcgg aatgctgaat atccaatatg tcgtagatgg cgaagaagtt ttcgttattg
     7981 aagtaaatcc gcgctcaagc cggacggcgc catttttaag taaaattacc gaaattccga
     8041 tggcgaatgt ggcgacaaga gttatcttag gggagaactt aatcgacctt ggttacacgc
     8101 caggacttgc cccagaaaaa caagaaattt ttgtcaaagt gccggtgttc tctttcgcga
     8161 aattgcgtag tgtggatacg tcgcttggac ctgaaatgaa atcgaccgga gaagttatgg
     8221 ggaaagatgt gacgctcgaa aaagcactct acaaaggttt tgtggcgagt gggacaacga
     8281 tgcatgacta cgggacagta cttttaactg tagcggaccg cgataaagaa gaagccgtag
     8341 aactagcgaa acgatttaat cgcataggct ttactattat ggcaacaaaa ggaacagcaa
     8401 gcacgttaga agaagcagac attccagtgt cacaagtgaa aaaaattgga gaaaatcaag
     8461 aaacgttgat cgattatatt cgaaatggcc aagtaacgct cgtagtgaac acattaacga
     8521 ctggtaaacg acctgagcgt gatggcttcc aaattcgccg cgaatctgta gaaaatggta
     8581 ttccggtctg tacctcgctc gatacagcgg aagcaatctt gcgtgtactg gaatcgcgct
     8641 cttttgaact cgaatcgatg aataccagtg aagtaaaaca acctaaagca cgtgtttaaa
     8701 tagaagaaac ggggtggaac cgtgttacag acggaaatga aggtcattca gcaaaccgaa
     8761 attgcagata aagtatacga attaattttg acaggggaac gtgtagccga tatgtcaccg
     8821 ggacagtttt taatgctgaa accgagtcgt tctgatttac ttatgagacg accgataagt
     8881 atttgttctt acgataaaac cgcaaagaca tgcattctgt tgtatcgagt agaaggtgac
     8941 gggacaagag atttcagtaa actttcagaa ggggatacta tcgatgtgtt aggtccgctt
     9001 ggaaaaggat tcgatatcga ccagacacct gcaccaaaaa ccgctctttt aatcgggggt
     9061 ggaattggtg tccctcctat gtatcaactc ggtaaagagt tagctggaaa aggcgtacaa
     9121 gtcacgtttg taaatggatt ccaatctgcg aaagatagtt tttatgaaaa agaaatgaat
     9181 gcatatggca cagttcatat tgcgacggtg gacggctcac ttggaacaca aggtttcgtc
     9241 acagacatca cgaacaattt tccagaagaa ccagatgtca tctatagttg cggaccaaaa
     9301 gcgatgctcc aggccgtgaa agctagtttt ccggaaacga aaacatatct ttctttagaa
     9361 gaacgaatgg catgcggtat tggggcttgc tacgcttgtg tttgtccaaa agcagatgat
     9421 gcgaaaaaac aatttaaagt gtgcgaagac ggcccagtat ttcgtgcgga tgaggtgagt
     9481 ttatgaaccg attagcagta gaaattcctg gattatcgct caaaaacccg attatgccag
     9541 catcaggatg ttttggcttc ggacaagaat atagcaaata ctatgattta aatgaacttg
     9601 gtgcgattat ggccaaagcc gtgacgccag aacctagact tgggaatccc actccgcgag
     9661 tagcagaaac cgcgagcggg atgctgaatg caatcggctt acaaaatcca ggtctagagc
     9721 atgttttggc gcacgaactg ccatttttag aacaatttga aacaccgatt atcgctaatg
     9781 tggcgggtgc gacggaggat gattatgtcc aagtctgcgc cagaattggg gaatcgaaag
     9841 cagtgaaagc catcgaactt aatatttcct gtcccaatgt gaaacatggg ggtatcgcat
     9901 ttggaacaga tccggatgtt gcgcatcgtt taacgaaagc cgtgaaaaat gtcgcaactg
     9961 tgccagttta cgtgaaatta tcaccgaatg tagcggatat tgtttccatc gcgcaagcaa
    10021 ttgaagccgc tggtgcggac ggactcacaa tgataaatac cttactcggc atgcgtattg
    10081 atttaaaaac aagaaaacca atcatcgcaa atggaacagg tggactttct ggcccagcga
    10141 ttaaaccggt ggctattcgg atgattcacc aagtccgcga ggtaagcaat atccctatca
    10201 ttggcatggg cggcgtgcaa actgtagatg acgtattaga attcttgatt gccggagcag
    10261 atgcagtcgc agtaggcacg atgaatttta ccgacccatt tatttgtccg aaattaatta
    10321 gcgaactacc aaaacgaatg gatgaactcg gtatttcttc cctacaagaa cttaaaaagg
    10381 agcgaacaaa tcaatgaata aaccaattat cgcgctagat ttccagactt acgaagaagt
    10441 agagaccttt ttagccaaat tttcgggaga aacgctatcc gtgaaagtcg gcatggaact
    10501 tttttatagc aacggtccaa tcattgttga aaaaataaag caacaacatc atgaaatctt
    10561 cttggattta aaactgcatg acatcccaaa cactgtcaaa agtgcgatga ttggcttggc
    10621 aaaactaggc gtagatatgg ttaatgtaca tgcggctggt gggaagaaaa tgatggaagc
    10681 tgccagggaa ggtctggaaa taggttcttc aagtggcaaa cgtccaaaaa ttattgccgt
    10741 aactcaactg acaagtacaa gtgagacaga catgcaaaca gaacaattaa taaaaacaag
    10801 tctacttgaa tccgtcatgc attatagcaa tttatcgaaa caagctggtt tagacggcgt
    10861 cgtttgctcc gcgctagaag cagaagatat taaacaacaa aatggcgctg attttttacg
    10921 tgtaacacca ggcatccgat tagcaagcga cgcagccgac gatcaaattc gtgtcgtaac
    10981 accagaaaaa gcgcgtttga ttggttcgtc aaacattgtc gttggtcgtt ccatcacgcg
    11041 cgcaaacgac ccggtagaag cgtataatca agttttaaag gagtggaatg catgagcatc
    11101 gaaaaacaag tagctgaaca attattagaa attaaagctg tatttttaaa accaaatgag
    11161 cctttcactt gggcatctgg aattaaatcc cctatatatt gcgacaatcg cctaacgcta
    11221 ggctttccaa aagtccgtca gtttatcgcc aagtcattag ccgaaaaaat caagcaaacc
    11281 tttggtgaag tagatgttgt tgcaggcacc gcaactgctg gtattccaca tgctgcatgg
    11341 gtgagtgatt tactagattt accaatggtc tacgtccgat caaaagctaa agaacacggc
    11401 aaagggaatc aaatcgaagg accaatttct aaaggtcaaa aagtagtggt cattgaagat
    11461 ttgatttcaa ctggtggaag ttcattaaaa gcagtggaag cgctggaaga agctggagcg
    11521 gaagtagttg gaatcgcggc catatttaca tatggacttg ctaaaggaaa acaactgcta
    11581 gaagaatctg gcacaaaact agtaacatta acgaactatg atgagctaat tgaagtagct
    11641 ttaaatgaaa attacgtgac tggtgaagat atggaaacat taaaagaatg gaagaaaaat
    11701 ccagaaaact ggggaaaata aaaagaagct cacctttgtt acggtgagct tctttttcta
    11761 ttaatatact ttataacttt caccagtttg tgcaccaaag acgctttttt caaacgcacg
    11821 agcgactttt gcggctggaa ctggaacgaa accttggaaa aatgattcta gtttgtccca
    11881 agattcttct aatatattcg ggctcactgt attaatccgg attccacgtg gcatttcaat
    11941 cgcagcagat tttgcaaaag ctgtaaccgc gccatttgcc atcgcagcag aagccccttg
    12001 gacgattgga tcttccatca taatgccagt agtaagggtg aagcttccat tatcattcaa
    12061 tgagttaatg cccagcaaaa ctagattaat ttgaccacct aatttactac taatcgtcac
    12121 tgcatttttc tcaggtgtta attctgttaa aggagaaaaa gtggcgcttc ctgtggctga
    12181 aacaattgcg tctacttttc caacctgttc gtacattttt ttgatgctat cgacactcgt
    12241 aatatccacc gtcacatcac cactatgtct accagcagta atcacttcgg cctttttctc
    12301 caaacgttct ttcaccgcag agccaagcgt accagaagca ccaattaata aaattttcat
    12361 tcctctatca tccttccaat aaaaaagtaa agtcagtaca catctaccct aaaattagaa
    12421 agaaaaaacg gctccaggaa ggaaccgtta attttttaac tctaaaacaa gcttttcatc
    12481 aggtgtaacg aaataagtcg tttggttatc ataaatgaca taaccaggtt tggcaccatt
    12541 tggtttcttc acgtgtttta cgagcgtgcc gtcaacgggg acggttgctg aaaggcgcgc
    12601 tttcgaataa taggctgcaa tcattgcggc ttctgtaatc gatgtctcat ctggatcatt
    12661 cgattgaatg accacatgcg aaccaggcaa atcttttaca tggaaccagt attcattatt
    12721 cctagctaat ttattcgtta aataatcatt ttgtttatta ttttttccga ctaaaatcgt
    12781 taagccggtc gaagaagtat atttttctgg agcaggtaaa gtcgcttttt tccggctgcc
    12841 ttttttctgt ttgtagcgaa gatagccttg ttcagctagt tcttggcgga tttcttccac
    12901 gtcttgtggg ccagatgttt caagttgtga ttccacggac tctaagtaag taatttcttc
    12961 tttcgtgagc gcgatttgct ctttcactac ttcgaccgcg ttacgtagtt tttggtagcg
    13021 gctaaagtag ctttgcgcat tggcggatgg tgtttttcta gtatcaagtg caatcgtcat
    13081 tttcttcata tcatcgtaaa agttttctac agtaatttct tccatcccgc gttccattaa
    13141 atgcagattg gcagttagaa gttcaccttg aatacgataa acatctgctt tttctgtttc
    13201 gagcaaagtg ttttcgagtt tttcgatttt cagcctgctt cgagccagtt cgttggataa
    13261 gagtttttct aaatcatgtg caaattgatg gacacgatca cgacgcgctt taccaatata
    13321 aaaatggtct aatagggtgc ttaaattcgc gaattcggtt gtttctgcat cgacatggcg
    13381 gagcgggaaa aaatagtaat cctctttatt ttggatgcgc cattcgtttg gcacggctgc
    13441 atggcctaaa tgctcgttca ctagcccaat tacttcgaaa aaggcggcaa ctagcgaatc
    13501 tgccgttaag ttcccagcac gaaatactat ttcccgagca agcaaagggc tgaatcctgc
    13561 aaaattttgt acaagttgct tatccattcg acccgctgag aaatctagtc tatccagaat
    13621 ctgctccgaa gtaacctcaa atgggtggag tttatccgtt gcaggaggta aaacataagt
    13681 cgctcccgga agcagtgttc ggtaactatt ttgtgcaggg gaaacgtgtt taatacaatc
    13741 aacaatcaca tttttcgcac ggtcgacaag agtgatatta ctatgccgtc ccataatttc
    13801 tacaaataaa tcacaaaaac gattttcacc gatatcatct ttaccgcgaa tactaaattg
    13861 taaaattcgt tcattaggaa gttgcgtaat cgattcaata atcgcgcctt ctaagtattt
    13921 tcgcagtaac atacaaaaca tcggtggggt tgctgggttt tcgggaatat catcggtcca
    13981 ctgaatccgc gcatagcttg gatgcgagga gatcagtaaa cgtttatttt cacggttttt
    14041 tcgaatatat aaaacaagtt catgcgagaa cggttgatgg attttcataa tacgtccact
    14101 ttctccgtgt tcggcaagtt cttcggtcat cgcttttaaa aacattgcat caaacgccat
    14161 tagttattca ttcctttgtg agttagttac tttctatttt aacatacatt ccgaaaatgt
    14221 attgtatgca aggagtagct ttggtataat aagaagtcag aacaaatttc aagtaatctt
    14281 agagggaact ttaagttatg aaaggtgtct tgccaaatgg tgaaaagcat gacgggattt
    14341 gggcgtgcga cgaaagaatt tgaagcgttc aaagtaacca ttgaattaaa agcagtcaac
    14401 caccgctact ccgaatttct ttttcggatg ccaaaacaac ttgcttattt agaaggaaaa
    14461 ttaaaaaaaa tcataagtaa gcaaatcaaa cgtggtagaa tcgaagtttt cttttccatc
    14521 acgggagagc aaatcacaaa acgtgaacta catattgact gggacctcgc agatagctat
    14581 taccgtttta ttaaacaagc aagcgctaga tatgaattac aagaattacc aactatggct
    14641 gatttactgc aagaacaagc ctatctttct attgaggaag aagtggaagc aagtagcgaa
    14701 ctagagcgat tagttttaga aacacttgcc cgcgcaactg agcgactgga tgagatgaga
    14761 agtatggaag gagcagaatt actgctttat ttcaaacaac atcttaccgc attggagaaa
    14821 agtttggaga tcattcaagc tgaaattcca aatacagaaa aacattacca agaaaaaatt
    14881 gaaacacgtt tacaaaacgt tgtaggcgac caatttgatc caagtatcgt tcttaccgaa
    14941 gtcgcaatgc tacttgaaaa ggcagatatt aacgaagaag tcgaacgaac aaagagtcat
    15001 ttaaagcaat tttatggtat tattttactc gaagaaccaa ttgggcggaa gctggatttt
    15061 ctgattcaag agatgaaccg cgaagtcaac acgattggct ccaaagcaag ttctctaaaa
    15121 atcactgaac aagtggtaga aatgaaaacg acgcttgaaa aaattcgaga acaagtgcaa
    15181 aatgtggaat gatatgcagg aggggaaatg atgacagaaa gaggactgtt aattgtactt
    15241 tcaggtccat ctggagtagg taagggaact gttcgggaag ctgtttttaa agatccggaa
    15301 acaagttttg attattctat ttccatgaca acgcgtcttc ctcgtgaagg cgaacaagac
    15361 ggggtcgatt attattttcg ttcacgagaa gtgtttgaac aagctatcaa agacggaaag
    15421 atgttagaat atgcagagta cgtcggtaat tattatggca ctccgcttga atatgtcgag
    15481 gaaaaattag ccgcaggagt ggatattttt ctcgaaattg aagtacaagg agcaatgcaa
    15541 gttcgaaaag cgatgccaga aggaattttc attttcttaa cgccaccaga cttgtctgag
    15601 cttaaaaacc ggattatcgg tcgcggtaca gaatcgatgg aagttgtcga ggaacgcatg
    15661 gaaacagcga agaaagaaat cgaaatgatg gcgtcttatg attatgctgt ggtgaatgat
    15721 gtagttgcaa acgccgtaca aaaaatcaaa ggcatcgtcg aaacagaaca cttaaaaact
    15781 gagcgagtaa ttcatcgcta caaaaaaatg ttggagggat tacaatgatg ttatatccat
    15841 caattgataa tttattgtta aaaatcgact caaaatattc gctagttaca gtggccgcta
    15901 aacgcgcacg ctacatgcaa ctggaaaatg ataaaggcgt attgccgagc taccagtccg
    15961 acaaatttgt tgggaaagcg ttagaagaaa ttcacgctgg aaaattagtt ttacaaaacg
    16021 acgataaata agcttaactg ctccgctttc ctgcggggct tttttgttag ccacaagtgc
    16081 aataaaaata agctgaaatc t
//
LOCUS       DABQVC010000048        15971 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.048,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000048 DABQVC010000000
VERSION     DABQVC010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15971
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.048"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            134..532
                     /locus_tag="IBJ56_001093"
     CDS             134..532
                     /locus_tag="IBJ56_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417352.1"
                     /translation="MAASLKDRLEKEVRTYSADNNLTVQTIDFLYAGPHMRGRHSLIL
                     AFTEAGIFTFVFKLSDAEMHFLDGETVQQIALEKKKLVYRLYIRAVTEEGELEEGKYL
                     VSKRVLGRKWHKETLEKLINKNLPLLTATK"
     gene            549..1157
                     /locus_tag="IBJ56_001094"
     CDS             549..1157
                     /locus_tag="IBJ56_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3417353.1"
                     /translation="MEKKRTRAEELGITRRKILDTARDLFMEKGYRAVSTREIAKIAN
                     ITQPALYHHFEDKESLYIEVVRELTQNIQVEMHPIMQVTKAKEEQLHDMLIMLIEEHP
                     TNILLMIHDILNEMKPENQFLLYKLWQKTYLEPFQLFFERLENAGELRDGVSAETAAR
                     YCLSTISPLFSGKGSFAQKQTTTEQIDELINLMMFGICKKEV"
     gene            1237..3399
                     /locus_tag="IBJ56_001095"
     CDS             1237..3399
                     /locus_tag="IBJ56_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HAM3417354.1"
                     /translation="MKDGFLSKIASGVGGKKGRFITLGIWIIAIIILQFFFPKAADYK
                     DDAAKDLPNSEPSVVAQKLIDDKFAGTDGVPALITWYRSTGLTTEDLVNIQKYSKELT
                     ENPVDYQKMAVPYDKMPPVALKQQVSKDGTTFIQTVIMKDSATSDQLTESFKQLESAA
                     KTTIGENPFAQKVSADDALVARTTGPAGISVDASGLFKDADVSLLIGTVLLVLVFLLV
                     IYRSPILALIPLIAVGFAYLVITPILGLLAKEGIITYGSQGLSIMTVLLFGAGTDYCL
                     FLISRFRSHLHTEKNRFQAFKEAFSGTAGAIALSGLTVMAALLLLLAAEYGSFHNFAV
                     PFSLAIFIMMISSLTLVPALLGIFGRVSFWPFVPRTVEMEETRAKKKGKTPKHHKENR
                     FWHKIGEMSAKHPVRILIITLIILIGCGIFTTQVKYTYDTLSTFPEDMPSREGFTLIS
                     DHFGAGMLAPMEVVVNSKESMKSSLENVDGVASVTGPERSKGYQKYTLILKDNPYSNE
                     AMDVVPKVRAAADKGNDVYIAGQTATQYDDRAVTEHDEKVIIPLVIALIAILLLCYLR
                     SITAMLYLVATVLLSFVGALGLGWVIIHYAMGVEAISGLIPLYAFVFIVALGEDYNIF
                     MISSIWKNSKKMPLRKAITEGVGQTGGVITSAGLILAGTFGVLTTLPIQLLVQFGLIT
                     AIGVLLDTFIVRPFLVPSITVLLGKWAFWPGKQHKMTK"
     gene            3478..4404
                     /locus_tag="IBJ56_001096"
     CDS             3478..4404
                     /locus_tag="IBJ56_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HAM3417355.1"
                     /translation="MRVIDTHCDALYKLQAGKGKYTFQDAEELDVNFERLIEAKMLLQ
                     GFAIFLDEDIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLENLPEDKIGAML
                     TLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIMEERGAGLTRFGKDIIHL
                     LNERKVFTDVSHLSVKAFWETLEQAEFVIASHSNAKAICSHPRNLDDEQIKAMIEHDA
                     MIHVVFYPLFTTNNGVADTEDVIRHIDHICELGGLKNIGFGSDFDGIPDHVKGLEHVG
                     KYQSFLETLEKHYTKEEIEGFASRNFLNHLPK"
     gene            4564..5907
                     /locus_tag="IBJ56_001097"
     CDS             4564..5907
                     /locus_tag="IBJ56_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HAM3417356.1"
                     /translation="MRLESNFVQKQQQKQSQKLNMTQQLSQSIAMLQFATADLVAFLE
                     DKALENPLIEVIPGSDFATDFSYSSRKSAGSSDDTDWLEQIADNKLTLADALKEQLHL
                     MDVTQTQKIIVLYLIESLNDNGYLQIDLKDVSAALLMDDSSVLEGLEILQSMEPAGVG
                     ARDARECILLQIERSPDAPYIAYDVIQKFFTEFAEKKWKKIAAEMDVSLQDIQEVSDY
                     IQTLNPKPGSEFESERVQYVVPDLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRAT
                     EEKDVAQFLREKAGEFDWIKKGIEQRENTLQRVGEAIVNHQKAYFLDNSAHLQPLTLK
                     EVAEELGVHESTVSRAVNGKYMETTNGVYELKRFFASGLQKKSSENENTGDISSTTIK
                     KLVQEFVAAEDKLKPLSDQKIVDMLAEKEIQVSRRAIAKYRLELNIPSSSKRKRF"
     gene            6348..7394
                     /locus_tag="IBJ56_001098"
     CDS             6348..7394
                     /locus_tag="IBJ56_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HAM3417357.1"
                     /translation="MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGML
                     GMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLENVMNQLSGLHSMEEQLA
                     KKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEM
                     MTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYR
                     SLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLEKIIRRKAVGEAFGYY
                     FDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEG
                     AAKSLLKGSNTLLK"
     gene            7427..8437
                     /gene="gap"
                     /locus_tag="IBJ56_001099"
     CDS             7427..8437
                     /gene="gap"
                     /locus_tag="IBJ56_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HAM3417358.1"
                     /translation="MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHL
                     LKYDTTQGRFDGEVEVHDGFFNVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTA
                     QDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMA
                     KVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIG
                     EVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSD
                     QVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKI
                     AK"
     gene            8572..9762
                     /locus_tag="IBJ56_001100"
     CDS             8572..9762
                     /locus_tag="IBJ56_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HAM3417359.1"
                     /translation="MAKKVVTDLDLKDKKVLVRVDFNVPMKDGKITNDNRIVAALPTI
                     EYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEK
                     AIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHAS
                     NVGIASNLESAAGFLMEKEIKFIGGVVDNPARPLVAILGGAKVSDKIGVIENLLTKAD
                     KVLVGGGMTFTFMAAQGQEIGKSLLEADKVELAKGLLEKAGDKLVLPVDAVVSKEFSN
                     DAPFHTVSADSIPADEMGLDIGQATIDLFTKELQGAKTVVWNGPMGVFELSNFAKGTI
                     GVCEAIANLTDATTIIGGGDSAAAAMDLGFADKFTHISTGGGASLEYLEGKELPGVAS
                     ISDK"
     gene            9808..10563
                     /locus_tag="IBJ56_001101"
     CDS             9808..10563
                     /locus_tag="IBJ56_001101"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HAM3417360.1"
                     /translation="MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPA
                     LFLQELVRLTEGTNLRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYF
                     HETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVI
                     KSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPEN
                     IADYLAESDIDGALVGGASLEPASFLALLEAVK"
     gene            10565..12097
                     /locus_tag="IBJ56_001102"
     CDS             10565..12097
                     /locus_tag="IBJ56_001102"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HAM3417361.1"
                     /translation="MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE
                     LKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFT
                     HTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSS
                     LEYLETLQKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVSAEGEKFEDPIE
                     LVKASYANDKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEW
                     DHFDRGANHPKNIKFVTMTLYNPSIDAEVAFEPIEMKNVIGEVLSNEGLSQLRIAETE
                     KYPHVTFFMNGGRNEEFPGENRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHD
                     AIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETM
                     STPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLI
                     QK"
     gene            12232..13524
                     /gene="eno"
                     /locus_tag="IBJ56_001103"
     CDS             12232..13524
                     /gene="eno"
                     /locus_tag="IBJ56_001103"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HAM3417362.1"
                     /translation="MSIITEVYAREVLDSRGNPTVEVEVYTEAGAFGRALVPSGASTG
                     EYEAVELRDGDKARYLGKGVLKAVENVNDIIADKIIGFDVTDQIGIDKAMIELDGTPN
                     KGKLGANAILGVSLAAARAAADELGVHLYEYLGGVNGKVLPVPMMNILNGGEHADNNV
                     DVQEFMVMPVGAPNFKEALRMGAEILHALKAVLKGKGLNTGVGDEGGFAPNLKSNEEA
                     LETIMQAIKDAGYKPGEEVKLAMDAASSEFYNRETGKYELKGEGVTRTSEEMVTWYEE
                     MITKYPIISIEDGLDENDWDGFKLLTERIGDRVQLVGDDLFVTNTTKLKEGIEKGIAN
                     SILIKVNQIGTLTETLDAIEMAKRAGYTAVISHRSGETEDSTIADIAVATNAGQIKTG
                     APTRTDRVAKYNQLLRIEDNLADLAEYHGNETFYNLKK"
     gene            13627..13800
                     /locus_tag="IBJ56_001104"
     CDS             13627..13800
                     /locus_tag="IBJ56_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417363.1"
                     /translation="MLMKVKNSQASKVLETPKIKDAVVHEKSHPLAEKHSVQKKIINA
                     DMPQQQFHRRLMK"
     gene            13933..14652
                     /locus_tag="IBJ56_001105"
     CDS             13933..14652
                     /locus_tag="IBJ56_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3417364.1"
                     /translation="MIAEINGINLFYQIIGKGEPILLIHGNGQNHRSLKRMIDDLSTN
                     HQVIAVDSRAHGKSEAGNTPLDFEVMALDMLSLLDYLKIDKYKVIGYSDGGIVALVMG
                     KLQPNRQIASVVIGTNYHVNQIRFLPDLFCRVAYGAAFLLAPFSRFFERMKRQLALTI
                     YHPHMSEADLQKISAPLLAVVGEYDLISSKDTKKMVHSVQHGEMVIVRNGLHYLPRQK
                     PKQLLQLIHSFFSNLSAEIHK"
     gene            14835..15578
                     /locus_tag="IBJ56_001106"
     CDS             14835..15578
                     /locus_tag="IBJ56_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAM3417365.1"
                     /translation="MSADRSFTLKAGNRAVLLLHGFAGTTEDVRELGEILAENGYTVH
                     APNFRGHGDEPAIFLKTTPEMWYEDAVAGYRQLEKDGYNEIAIVGVAMGGVFALKMAE
                     SFSPKAIVPLCANVNRKMRYIPIENYLTKQLKKQGIVEQEADQMLKNYLPEIDVMTEA
                     RATFYKNVARDIEKIHVPTMIGQGCQDEEIDADNANYIFKHIHTNDKQLCFYAGSGHD
                     IVNDCEKDILEEDLIYFLDDLVWLEEKVV"
     gene            15668..15901
                     /gene="secG"
                     /locus_tag="IBJ56_001107"
     CDS             15668..15901
                     /gene="secG"
                     /locus_tag="IBJ56_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HAM3417366.1"
                     /translation="MSTVLTVLLIIVSVLLITVIILQPGKSAGLSGAISGGAEQLFGK
                     QKARGLELILHRTTIVLSVVFFAILIALAYFVQ"
BASE COUNT         5292 a         2871 c         3370 g         4438 t
ORIGIN      
        1 gagaatactt gatttgactt ttttatgaat tatgaaggga aataatttaa tcctttttaa
       61 gtatcaaaaa actttcccta cttcaacccg ccattttctg gtaaaatata aatcagcaag
      121 ggaggcgctt attttggctg ctagtttgaa agaccgatta gaaaaagaag taagaacata
      181 tagtgctgac aataatttga ccgttcaaac gattgatttt ttatatgcag ggccccatat
      241 gcgagggaga cattcgctta ttctcgcgtt cacggaagcg ggaattttta catttgtatt
      301 taaattaagt gatgcggaaa tgcacttttt ggatggggaa acggttcagc aaattgcgct
      361 tgagaaaaag aaattagttt atcggttata tattcgtgca gtgaccgaag aaggcgagct
      421 ggaggaagga aaatatcttg ttagtaagcg tgttctaggt cgtaaatggc ataaagaaac
      481 actagaaaag ctcattaata aaaaccttcc attactaact gcaacaaaat aagaaaggtg
      541 gggtgatgat ggaaaagaag cggactcggg cagaagaatt aggaataact agaagaaaaa
      601 ttttggatac agcacgtgat ttatttatgg aaaagggtta ccgggcagtt tcaacaagag
      661 aaatagctaa aattgccaac attacccaac cggcactata tcaccacttt gaagataaag
      721 aatccctata tattgaagtg gttcgtgaat tgacgcaaaa tatccaagtg gaaatgcatc
      781 caattatgca agtgaccaaa gcaaaagaag aacaattaca tgatatgtta attatgttaa
      841 ttgaggaaca tccaaccaat attctattaa tgattcacga tattcttaat gaaatgaaac
      901 cagaaaatca atttttactt tataaattat ggcaaaaaac ctatttggaa ccatttcaac
      961 tattttttga gcgtctagaa aatgctggcg aattgcgtga tggtgtcagt gctgagactg
     1021 ctgcgagata ctgtttgtcc actattagcc ctcttttttc tgggaaaggc agctttgcgc
     1081 aaaagcaaac gactacagaa caaattgatg aattaatcaa cttaatgatg tttggtatat
     1141 gtaaaaaaga ggtataattt agcgtgcttc tttttttggt gtttcactta tcgaatgata
     1201 aacgaaaaaa ataagcaaac taaaggggga tttataatga aagatggatt tttaagtaaa
     1261 attgccagtg gggttggtgg caagaaaggc cggtttataa cattaggtat ttggattatc
     1321 gcaattatta ttttacagtt tttctttcca aaagcagctg attacaaaga tgacgctgcg
     1381 aaagatttac cgaattcaga gccttctgtt gtcgcccaaa aactcattga cgacaaattt
     1441 gctggaacgg acggggtacc agcgcttatc acttggtatc gttcaactgg tttaacaacc
     1501 gaagacttag ttaatattca aaaatacagc aaagaattga ccgaaaaccc ggtagactat
     1561 caaaaaatgg cggttcctta cgataaaatg ccacccgtgg cgctcaaaca acaagtttct
     1621 aaagacggaa ctacttttat tcaaaccgtt attatgaaag acagtgcgac ttcagatcaa
     1681 ctaacagaga gcttcaagca acttgaatca gcggctaaaa caaccattgg agaaaatcca
     1741 tttgcacaga aagtatctgc tgatgatgcg cttgttgctc ggacaactgg accggctggt
     1801 attagcgtgg atgcgagtgg actatttaaa gatgcggacg tttcgctgct aatcggaaca
     1861 gtactacttg ttttagtctt tttactagta atttatcgtt cgccaatttt agcgttaatt
     1921 cctttgattg cagtcggttt tgcctactta gtaattacgc cgattcttgg gttactcgcg
     1981 aaagaaggta ttatcacata tggctcacaa gggctctcga taatgaccgt attactattt
     2041 ggcgccggaa cggattattg tttattctta atatccagat tccgcagcca tctgcacaca
     2101 gagaaaaaca gattccaagc atttaaagaa gcatttagcg gaacagccgg cgcaattgca
     2161 cttagtggat tgaccgtaat ggccgcacta cttctattat tagcagcaga atatggttca
     2221 ttccacaatt tcgccgtacc atttagttta gcgattttca ttatgatgat ttcctcgcta
     2281 acacttgtcc cagcacttct aggcatattc ggtcgtgtgt cattctggcc atttgtccca
     2341 agaaccgtag aaatggaaga aacacgcgcg aagaaaaaag gcaaaacacc aaaacaccac
     2401 aaagaaaacc gtttttggca taaaattggt gaaatgtctg cgaaacatcc tgtacgaatt
     2461 ttaatcatca cattgattat tttaattgga tgtgggattt ttacaactca ggtgaaatac
     2521 acgtatgaca cactttcaac gttcccagaa gatatgccat ctcgggaagg atttacctta
     2581 attagtgatc attttggtgc cggtatgctt gcgccaatgg aagtagtggt aaactccaaa
     2641 gaatcaatga agagttcgct tgaaaatgtg gatggagtgg cttcagtgac tggtccagaa
     2701 cgaagcaaag gttatcaaaa atatacactt attttaaaag ataaccctta tagcaatgaa
     2761 gcaatggatg tcgttccaaa agtacgtgcc gcagccgaca aaggaaatga cgtatatatt
     2821 gcgggacaaa ctgcgacaca atatgatgat cgcgcggtga cagagcacga tgaaaaagtg
     2881 attattccgc ttgttatcgc tttgattgcg attttacttt tatgctactt gcgctcgatt
     2941 acagcaatgc tttacttagt cgctacagtt ctcttgtcct tcgttggagc gctcggcctt
     3001 ggttgggtca tcattcatta cgcgatggga gtagaggcga tttctggctt aattcctctc
     3061 tatgcctttg ttttcatcgt cgcactcggg gaagattaca atatctttat gatttctagt
     3121 atttggaaaa acagcaagaa aatgccactt agaaaagcga ttacagaagg tgttggccaa
     3181 actggcgggg ttatcacgtc tgctggttta attttagcag gaactttcgg agtcctaact
     3241 acactgccaa ttcagctctt agtacaattt ggcttaatta cggcaattgg tgtcctactc
     3301 gataccttca tcgtccgccc gttcctagtt ccatcaatta ctgtgctcct tggaaaatgg
     3361 gcgttctggc caggtaaaca gcataagatg acaaaatgaa aacgactttg aaaaatctct
     3421 tgtctattcc tctgaaaagt atataataga tgtatctaaa aggaggaacg acagaaaatg
     3481 agagtaattg atacccactg tgatgcgctt tacaagctac aggctggaaa aggaaaatac
     3541 actttccaag atgcagaaga acttgatgtg aattttgaac ggcttataga ggctaaaatg
     3601 ttactacaag gattcgctat ttttcttgat gaagatatcc ctgttgaaca taaatggaag
     3661 aaagcggttg aacaagttaa tatttttaaa caacacgtac tgcacaaagg tggaatcatt
     3721 catcatgtga aaaaatggtg tgatttagaa aatctacctg aagataaaat tggcgcgatg
     3781 ttgacgttag aaggcattga accaattgga cgtgatttag ataaattaac gcaattactt
     3841 gatggtggcg tattatctgt cggactaacg tggaacaacg ccaatttggc agcggatggc
     3901 attatggaag aacgtggcgc aggactaacc cgcttcggaa aagacattat ccatctttta
     3961 aatgaaagaa aagtattcac ggatgtttct cacttgagtg taaaagcttt ttgggaaacg
     4021 ttggaacagg ctgaatttgt gattgctagt cattcaaatg ccaaagcaat ttgttctcac
     4081 cctagaaact tagatgatga acaaatcaaa gcgatgatcg agcatgatgc gatgattcat
     4141 gtagtcttct atccactttt cacaacaaat aatggtgtgg ctgatacaga ggatgttatt
     4201 cgtcatattg atcatatatg cgagcttggc ggattgaaaa acattggttt tggttcagat
     4261 tttgatggta tcccagatca tgtcaaaggc ctcgaacacg tcggtaaata tcaaagcttc
     4321 cttgaaacac tcgaaaaaca ctacactaaa gaagagatag aaggatttgc atcgcgcaac
     4381 ttcttaaacc atttaccaaa ataaacgaaa gtccaagcac tgtaagaagt gcttggactt
     4441 tttttgaaat agaacaaaga gaatctgctg taatttgaaa aatggcatgt tataatgaag
     4501 acaataaatg gaatttagtt tggtataagg tatatcagac gaatttttaa tggaggtttt
     4561 aatgtgcgtt tagaatctaa tttcgtccaa aagcaacaac aaaagcagtc gcagaaatta
     4621 aatatgacgc aacaattgtc ccagtctatt gcaatgcttc aatttgcaac ggctgatcta
     4681 gtggcatttt tagaagataa agcactcgag aacccattaa ttgaagtgat tccaggctcg
     4741 gattttgcaa cagacttttc ttacagtagt cgaaaaagcg ctggaagttc tgatgataca
     4801 gattggctag aacaaatagc tgacaataag ctgacgttag ccgatgcgct aaaagaacag
     4861 ctacatttaa tggatgtaac gcaaacacaa aaaattatcg tcttatattt aatagaaagc
     4921 ttaaatgaca atggttattt acaaatagat ttgaaagatg tcagtgcggc gcttttaatg
     4981 gatgattcta gtgtgttaga aggcctagaa atcttgcaaa gcatggagcc agccggcgtt
     5041 ggggcaagag atgcgcgtga atgcatttta ctacagatcg aacgctcgcc ggatgctcct
     5101 tatattgcct atgacgttat ccaaaaattc ttcacggaat ttgcagagaa aaaatggaag
     5161 aaaatcgctg cagaaatgga tgttagcttg caagacattc aagaagtttc cgactacatt
     5221 caaaccttaa atccaaagcc gggttctgaa tttgagtctg aacgcgttca atatgttgtc
     5281 ccggatttaa ttttactcca acacgaagat gaatttgctg tttcactagc aaaacaattt
     5341 ctgccacaag tgcgtttcca agaagcatac tacgaaacga tgcgagcaac cgaagaaaaa
     5401 gacgtcgccc aatttctacg cgaaaaagcc ggcgaatttg attggataaa aaaaggcatc
     5461 gaacaacgcg aaaacacctt gcaaagagtt ggagaggcga ttgtcaatca tcagaaagct
     5521 tatttcctag ataattccgc gcatttacaa ccattaacct taaaagaagt agcggaagag
     5581 cttggtgtac atgaatcaac cgtgagccgt gcggtgaatg gaaaatacat ggaaacaacg
     5641 aatggtgtgt acgaattaaa acgcttcttt gcatccggtt tacaaaagaa atcttccgag
     5701 aacgaaaaca caggtgatat ttcaagtaca actatcaaaa agctagtaca agaatttgta
     5761 gcagcagaag ataaattaaa accactctcc gatcaaaaga tagtagatat gctcgcagaa
     5821 aaagaaattc aagtttcaag aagagctatc gcaaagtatc gtttagaatt aaatattcct
     5881 tcttcctcta aaagaaaaag attttaaaag acgttttttg cctcacgagc cgtgtgtggg
     5941 acaaaaaacg tctttttaaa acaaaaaaat aactaagagc atgtttcgtt ttttgaagag
     6001 gtggaaaaca actagtatag cctatttaga agtttgcagt ttaagattta attgtaaatt
     6061 tcaggtgaat atttcataaa tgtcccactt aacacttgaa gatttgtgcc aagactgtta
     6121 gaatagggaa cgtagggtag ttaaagaaca taaaaaagat tcaccagcgt aagcagaaag
     6181 agaaggggta aaaatcacat tgagagacac tttgttaaca agctgaagta gctagtttaa
     6241 tagtcttgaa agttgtaaaa acctctatct ctactttttt tagttctaac gggacgtcag
     6301 atgactaagt gggtcgttaa gcgtccaaag atgaggagca attaaaaatg tcagacttaa
     6361 ttaacattca gaaaaagtta ttgcccgacg ttttgatgat tatgcaaaaa cgctaccaaa
     6421 tcctacgctc gatttatttt tctgaaccag ttgggagacg gacacttgcc ggaatgctag
     6481 gcatgagtga acgcgtcctg cgcggcgaag tagaattttt gaaagcacaa ggtttagtag
     6541 aaattgcttc ttccggaatg accgttacta aagaaggctt ggtcgttttt cgcgatttgg
     6601 aaaatgtcat gaatcagctt tcagggttac attcaatgga agaacaatta gcgaagaaat
     6661 tgcaaatcaa aaaatgcttg gtggtgcaag gtgatagcga tgatactcca tgggtccgcg
     6721 aagaaatggg acgtgtggcg gttgaacaat tagacatggc gctcaccgaa aaaagaaaca
     6781 tcgtcgcagt tatgggcggc tctacaatgg ctactgttgc cgaaatgatg acaactgatt
     6841 tcgcaaaagg cagagaacta cttttcgttc ccggtcgtgg aggtattggt gaagaccttg
     6901 acaatcaagc gaatacaatt tgtgataaga tggcaacaaa gacaaacaca aaacaccgcg
     6961 ttctctatgt tccggagcaa ttaggcgaag aagcctatcg ttctttactg aaagaaccgg
     7021 caattcaaga aggcttacga ttagtacaat ctgcaaatgc tattatttta ggcataggtg
     7081 atgcgctcgc gatggcgaaa cgcagacata ccggcgaaga tgtacttgaa aaaatcatcc
     7141 gtcgtaaagc tgtaggtgaa gcatttggtt attattttga tgaacaaggc gaggttgtac
     7201 ataaggtccc tacattcggt cttcaattcg aagacttagc gcaaatcccg cacattatcg
     7261 ctgttgcagg cggtacatcg aaagccaaag caatcaaatc gtatatgaaa agtgctccaa
     7321 aaaatacgat tttaatcacg gatgaaggag cagcaaaatc gcttttaaaa gggagtaata
     7381 cccttttgaa ataaaaaaac actattttca aggaggaaat tgacttatga cagttaaagt
     7441 tggtattaat ggttttggac gtatcggacg tctagcattc cgtcgtattc aaaatgtgga
     7501 aggaattgaa gttgttgcaa tcaatgactt aacagacgct aaaatgttag ctcacctgtt
     7561 aaaatatgat acaactcaag gccgttttga cggtgaagta gaagtacatg atggtttctt
     7621 caacgtaaac ggtaaagaag ttaaagtatt agctaaccgt aacccagaag aacttccatg
     7681 gggtgaccta ggagtagaca tcgttttaga atgtactggt ttcttcacag cgcaagacaa
     7741 agctgaatta cacattaaag ctggcgctaa aaaagttgtt atctccgctc cagcaactgg
     7801 cgacatgaaa acaatcgttt acaatgtaaa ccatgaaaca ttagacggaa ctgaaacagt
     7861 tatctctggc gcaagctgta ctactaactg tttagctcct atggctaaag ttttagaaga
     7921 caaatttggt gttgttgaag gtctaatgac tacaattcac gcttacactg gtgaccaaaa
     7981 tacattagat gctccacatc caaaaggtga cttccgtcgt gcacgtgctg ctgccgaaaa
     8041 tattatccct aatacaactg gtgctgctaa agctatcggt gaagtattac caacacttaa
     8101 aggtaaatta gacggagctg ctcaacgtgt tccagttcca actggttccc ttactgaatt
     8161 agtaacagtt cttgacaaaa aagttactgt tgatgaagta aatgcagcta tggaagcagc
     8221 ttctgatcca gaaacattcg gttacactag tgaccaagtt gtttcttctg acatcaaagg
     8281 tatgactttc ggttcattat ttgacgaaac tcaaacaaaa gttcttacag ttggcgatca
     8341 acaattagtt aaaactgtag cttggtacga taacgaaatg agctacactg ctcaattagt
     8401 acgtacttta gaatactttg caaaaatcgc taaataatta gcagattaat tttactgaag
     8461 tgctagtcac atcagcaata acaagaataa gcggagacac tattgtttcc gcttattttc
     8521 tgaaataacg ggggcgaccc caatccttta aaattaatgg aggaactcta aatggctaaa
     8581 aaagttgtaa ctgatttaga tttaaaagac aaaaaagttt tagttcgtgt tgactttaac
     8641 gtgccaatga aagacggcaa aatcactaac gacaaccgta ttgttgctgc acttccaaca
     8701 attgagtaca tcttagaaca aaacggtaaa gcaattctat tttctcacct tggaaaagta
     8761 aaaacagaag aagataaaga aggaaaatct cttcgtccag tagccgctcg tttaagcgaa
     8821 ttacttggaa aagaagtgaa attcgttcca actactcgtg gtccagaact tgaaaaagca
     8881 attgatgagt taaaagacgg cgaagtactt ctttttgaaa atacacgttt tgaagatatt
     8941 gatggtaaaa aagaaagcaa aaatgatcca gaacttggaa aatactgggc tagccttggc
     9001 gacgttttcg taaatgacgc tttcggtact gctcaccgtg cgcacgcgtc taacgttgga
     9061 atcgcttcta acttagaatc agcggccgga tttttgatgg aaaaagaaat taaattcatc
     9121 ggcggtgtag ttgataatcc agcacgtcca ctagtagcaa tcctaggtgg cgcaaaagtt
     9181 tctgacaaaa tcggtgttat cgaaaactta cttacaaaag cagacaaagt tcttgtcggc
     9241 ggcggaatga ctttcacttt catggcagct caaggtcaag aaattggtaa atctctttta
     9301 gaagcagata aagttgaact tgctaaaggc ttacttgaaa aagctggcga taaattagta
     9361 ttgccagttg atgcagttgt atctaaagaa ttcagtaacg atgctccttt ccatacagtg
     9421 agtgcagata gcattccagc tgatgaaatg ggactagata ttggtcaagc tacaattgac
     9481 ttatttacaa aagaacttca aggcgctaaa acagttgtat ggaatggtcc aatgggcgta
     9541 ttcgaactta gcaactttgc taaaggtaca attggcgttt gtgaagctat tgcaaactta
     9601 acggatgcaa caacaatcat cggtggtggg gattccgcag cagcagctat ggacttaggt
     9661 tttgctgaca aattcacaca tatttccact ggtggcggtg catcattaga atatcttgaa
     9721 ggtaaagagc ttcctggcgt tgcttctatt agcgacaaat aagctgaacc aaaaataatt
     9781 tttaatatcg agaggatgtt tatccaaatg cgtaaaccaa ttattgctgg taactggaaa
     9841 atgaacaaaa ctgctgcaaa agcaggacaa tttgcagaag acgtaaaaaa taacgtgcca
     9901 tcaagcgatg ctgttgaatc agtagttgct gcaccggcgc tatttttaca agaattagtt
     9961 cgtcttactg aaggaactaa tcttcgcgta gctgcacaaa actgttattt tgaagacgaa
    10021 ggtgctttca ctggcgaaat tagcccgttt gcacttgctg atttaggtgt ttcttatgtt
    10081 attatcggac actctgaacg tcgtgagtat ttccacgaaa cagacgaaga tattaacaaa
    10141 aaagcacatg caatcttcaa acacggcatg acaccaatca tttgctgtgg tgaaacatta
    10201 gatcaacgtg aagctggtca aacagatact tgggtacgtg gtcaaatccg tgcagctctt
    10261 gctggattaa cggaagaaca agtaatcaaa tctgttattg cttatgaacc aatttgggca
    10321 atcggtactg ggaaatcttc cacaagtgct gatgcaaacg aaacttgtgc agttattcgt
    10381 gcagaagttg cagacgctgt atctcaaaaa gcagcagacg cagttcgtat tcaatacggc
    10441 ggtagcgtaa aacctgaaaa cattgctgat tatcttgcag agtccgacat tgacggcgct
    10501 cttgtaggtg gagcaagctt agaaccagca tcgttcttag cattattgga ggcagtaaaa
    10561 taaaatgagt aaatcacctg tagcaattat tatcctcgat ggttttggta aacgtgcaga
    10621 aacagtaggt aatgctgtag ctcaagcaaa caaaccaaat ttcgaccgtt attgggctaa
    10681 ttttcctcac ggggaactta aagctgccgg ccttgatgtt ggtcttccag aaggtcaaat
    10741 gggtaactct gaagttggcc atacaaacat cggagctgga cgtattgtct accaaagctt
    10801 aactcgtatt gacaaagcta ttgaagaagg cgaattccaa gagaataaag ccctaaacaa
    10861 tgctttcact catacaaaag aaaacaactc ggacttacat cttttcggtt tactatcaga
    10921 cggcggcgtg catagtcaca ttaatcacct cgttgcactt ttagaaactg cgaaagataa
    10981 aggcgtgaaa aacgtttata tccatgcatt ccttgatgga cgtgacgtgg ctccacaatc
    11041 ttcactagaa tatttagaaa cactacaaaa agctattagt gatttaaact atggtgctat
    11101 tgctactgtt tctggacgtt tctacgcgat ggatcgtgat aaacgctggg aacgtgttga
    11161 aaaagcatac aaagcaatcg taagcgctga aggtgaaaaa tttgaagatc caatcgaact
    11221 tgtcaaagct tcttatgcta atgacaaaaa tgatgaattc gttgttccag ctatcattac
    11281 taaagatggc aaacctgttg caacagttaa agacaacgat gcagttattt tcttcaattt
    11341 ccgtcctgac cgtgcgattc aactttctaa tgcattcact gataaagaat gggatcattt
    11401 cgaccgcggg gctaaccacc ctaaaaacat caaattcgtt acaatgactc tttacaaccc
    11461 aagcattgat gctgaagttg cttttgagcc aattgaaatg aaaaatgtta tcggcgaagt
    11521 actttctaat gaaggcttat cgcaactgcg tatcgctgaa acagaaaaat atccacatgt
    11581 aacattcttt atgaatggtg gacgaaatga agaattccct ggtgaaaacc ggattctaat
    11641 caattcgcca aaagtagaaa catacgattt gcaacctgaa atgagcgcat atgaagtaac
    11701 agatgcactt gttgaagaca ttaaaaacga caaacacgat gcgatcatct taaacttcgc
    11761 aaacccagat atggttggtc actcaggtat gcttgagcca acgattaagg caatcgaagc
    11821 agtagatgaa aatcttggtc gtgtagtaga ccttatttta gaaaaaggtg gatcagctat
    11881 tatctttgcg gaccatggta actctgaaac aatgtctact ccagaaggaa aaccgcacac
    11941 tgcgcacact actgttccag ttccagtaat tgtaacgaaa aaaggtgtaa cgcttcgtga
    12001 aggtggtcgt ctggctgacg ttgcgccaac tatgcttgat ttacttggcg ttaaaaaacc
    12061 tgccgaaatg acaggtgaaa gtttaattca aaaataattt tagttattac tttagttttt
    12121 ttgcaaacag agctacaata aatacgaatt taaaaacgga tgggtctttg atttgaagtg
    12181 aattttttgt tcatttcatt caattaatcc caacaaagga gagaattata aatgtctatt
    12241 attactgaag tttatgctcg cgaagtctta gattcccgtg gtaacccaac tgttgaggtt
    12301 gaagtttata ctgaagctgg tgcgtttggt cgcgctttag ttccaagtgg tgcttcaact
    12361 ggtgaatacg aagctgtaga attacgcgat ggcgacaaag ctcgttacct tggaaaaggt
    12421 gttttaaaag ctgttgaaaa cgtaaacgac attattgctg acaaaattat cggttttgac
    12481 gtaactgatc aaatcggaat tgacaaagca atgatcgaac ttgatggtac acctaacaaa
    12541 ggtaaattag gtgctaacgc tattcttggt gtttctttag ctgctgctcg tgctgctgct
    12601 gacgaactag gcgtacattt atatgaatat cttggcggag tgaacggtaa agttcttcca
    12661 gttccaatga tgaacatcct taacggcgga gaacatgctg ataacaatgt cgacgttcaa
    12721 gaatttatgg taatgcctgt tggagctcca aactttaaag aagctctacg tatgggtgct
    12781 gaaatcctac acgcacttaa agctgtactt aaaggtaaag gcttaaacac tggtgttggt
    12841 gatgaaggtg gattcgctcc aaaccttaaa tccaatgaag aagctcttga aacaatcatg
    12901 caagcaatta aagatgctgg ttacaaacct ggcgaagaag ttaaacttgc gatggatgct
    12961 gcatcaagtg agttctataa ccgcgaaact ggtaaatacg aacttaaagg tgaaggcgta
    13021 actcgtactt ctgaagaaat ggtaacttgg tatgaagaaa tgattactaa atacccaatc
    13081 atctctattg aagatggcct agacgaaaac gactgggacg gattcaaact acttacagaa
    13141 cgtattggtg accgcgttca attagtaggt gacgatctat ttgtaactaa cacaactaaa
    13201 cttaaagaag gtatcgaaaa aggtatcgct aactccatcc taatcaaagt taaccaaatc
    13261 ggtactttga ctgaaacatt ggatgcaatt gaaatggcta aacgcgctgg ctacactgca
    13321 gttatctctc accgttctgg tgaaacagaa gattccacaa tcgctgacat tgcagtagct
    13381 acaaacgctg gtcaaatcaa aactggtgcg cctactcgta ctgaccgtgt tgcaaaatat
    13441 aaccaattac tccgcatcga agacaatttg gctgatcttg ctgaatacca tggtaacgaa
    13501 actttctaca acttaaaaaa ataagttgat tgaataaaac gctaagctcc gcgaaaagta
    13561 acattttcgc ggagtttttt ctgttttaaa aatagcgaga ggggtaatga tttggaagag
    13621 gaggtaatgc tgatgaaagt aaaaaatagt caggcctcaa aagtgctcga aactccaaaa
    13681 atcaaagacg ctgtggtgca tgaaaaaagc caccccttag cggaaaaaca ttctgtgcaa
    13741 aagaaaatca ttaacgcaga tatgccccaa caacagtttc accgaagact tatgaaataa
    13801 acggtgcgcc tgattctagt tttaaaagaa tcaggcgtat tttaatgaaa atggaagctt
    13861 ttttatagga aatcaagtat aatcaggtgt aaaataaggg tagaaaatgt tttcagcaag
    13921 gagaaatgct atatgattgc agaaatcaat ggaattaact tgttttatca aataatcggt
    13981 aaaggcgaac caatcttgct tattcacggg aatggtcaaa atcatcgttc tttaaagcgg
    14041 atgattgatg acctctctac taatcatcaa gtaatcgccg tagatagccg cgcacacggg
    14101 aaaagtgaag cgggaaatac accgcttgat tttgaagtaa tggcgctaga tatgctttcg
    14161 ttactcgatt atttgaaaat tgataaatat aaagttatcg gatatagcga cggcggtatt
    14221 gttgctctcg taatggggaa attgcaaccg aaccgtcaaa tcgcatccgt tgttattgga
    14281 acaaactatc atgtaaatca aatacgattt ttaccagatt tattttgtcg tgtcgcctac
    14341 ggggctgcat ttcttttagc gccatttagt cgcttttttg agcggatgaa acgacaactt
    14401 gctttaacga tttatcatcc acatatgtca gaagcggatt tgcaaaaaat aagcgcgcca
    14461 cttttagctg ttgtgggtga atatgattta atatcttcca aagatacaaa gaaaatggtg
    14521 cattctgttc aacacggtga aatggttatt gtaagaaatg gacttcatta tttaccaagg
    14581 caaaaaccga aacaattgtt acaattaatt catagtttct tttctaattt aagcgcagaa
    14641 attcacaaat gaaacctccg gaaaagcctt tggtagcaac gtgtttgagc tttgtgaaaa
    14701 aagtgtttga caagttcctt ggatagcgtt aatattggtc tattggtcag aactcaaaag
    14761 gtagcttatt tagttcagat gggctacaat agagtggatt ataaaagtga tgatattagg
    14821 aggattgcgt aaaaatgagt gcggatcgta gctttacgtt aaaagcggga aatcgtgctg
    14881 ttttgctctt gcatggcttt gcagggacta cagaagacgt aagagaactt ggagaaattc
    14941 tagcagaaaa tggatacaca gtgcatgcac caaacttcag aggtcacggg gatgaacccg
    15001 ctattttctt gaaaacaaca ccggaaatgt ggtatgaaga tgcggtggct ggatatcgtc
    15061 aacttgaaaa agacggatat aatgaaattg caattgtcgg tgtcgcaatg ggcggagttt
    15121 ttgcgcttaa aatggcagaa tcgttttcac caaaagcgat tgttccacta tgcgccaacg
    15181 tcaaccgcaa aatgcgctat atcccaatcg aaaactattt aactaaacaa ttaaagaaac
    15241 aaggtatagt agaacaagaa gcagatcaaa tgctaaaaaa ctaccttcct gaaatagacg
    15301 taatgacgga agcacgtgct actttctaca aaaacgtagc gcgagacatt gaaaaaattc
    15361 atgtaccaac catgattggc caaggctgtc aagatgaaga aatcgacgca gataacgcca
    15421 attatatctt taagcacatt catacaaatg ataaacaatt gtgtttctat gcagggtcag
    15481 ggcatgacat cgtgaacgac tgtgagaaag acattttaga agaagactta atttacttct
    15541 tagacgattt agtttggcta gaggaaaaag ttgtttaact attgtataga aacaaacctt
    15601 tacgtataat accaaatatg gtaaaattaa tcttagtcaa attgggcggt tttaggagga
    15661 aagaacaatg agtacagttt taacggtctt actcatcatc gtatcagtac tgttaattac
    15721 agttatcata cttcaaccag gtaaaagtgc tggcttatcc ggcgccatct ctggtggagc
    15781 tgagcaatta ttcggtaagc aaaaagcaag aggactagaa cttattctac atcgtacaac
    15841 catcgttcta tccgttgttt tcttcgcaat actaattgca ctggcatatt ttgtacagta
    15901 acgagatgtt aaccacctga atgaaaattt aggtggtttt ttattggagt tctaaagaag
    15961 cgtattccgc t
//
LOCUS       DABQVC010000049        15722 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.049,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000049 DABQVC010000000
VERSION     DABQVC010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15722
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.049"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..118)
                     /locus_tag="IBJ56_001108"
     CDS             complement(<1..118)
                     /locus_tag="IBJ56_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417367.1"
                     /translation="MDINMFILYFFIYSVLGWAWEEIFCSISEKKLVYRGFLY"
     gene            complement(192..554)
                     /locus_tag="IBJ56_001109"
     CDS             complement(192..554)
                     /locus_tag="IBJ56_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HAM3417368.1"
                     /translation="MSDEFAWIQKEISGLKGVQYSFKEEWGAERYHVLDQLMAMRGTN
                     KEGQPILTLKCDAEKSEQLRAENRAIVPGYYMNKRVWISVLLEEERDKDLIRALIQHA
                     YSEAKNKLPKYKQAELFD"
     gene            complement(551..919)
                     /locus_tag="IBJ56_001110"
     CDS             complement(551..919)
                     /locus_tag="IBJ56_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAM3417369.1"
                     /translation="MINEFVCTNISTQDPAALVAFYHEKLGIPIVFEGYDNYDGAKLG
                     FSEKAPGIIVWNNSKWGEASESKVEFVFSCDTNLDEMYRELQTAGVETPEPRVAEWGG
                     RELNLLDPDGNKIMILEPAQ"
     gene            complement(965..1771)
                     /locus_tag="IBJ56_001111"
     CDS             complement(965..1771)
                     /locus_tag="IBJ56_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAM3417370.1"
                     /translation="MAKLETFYPIVATPKRAGYKEYLPSAVLTGYIRCFWEADDKNFP
                     GNNLVVPDLCADIIFTIDSKTGLVTDAIFVGVSDAPFESDDESNTELFAVRFYAWSLF
                     LFVEQDLTGSMNRVKEPEEMFAGFVSFFQERFAEMTTNMERIALLEEFLLRKLMMLGK
                     QVHPDFLNGIDKLLQNPNQLALGAVSVRQLERLFQKHMGLAPKQTAKLIRFQKVLQAL
                     YENPSVPGAELAYLHGFTDQAHLIKQFKRYSNHTPEEMKQIFLQNVANIQ"
     gene            1887..2357
                     /locus_tag="IBJ56_001112"
     CDS             1887..2357
                     /locus_tag="IBJ56_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HAM3417371.1"
                     /translation="MSAYKRILVGVDGSNEAEAALRRAVQFAKMDGATLGIGFVADVR
                     RIAPLIDYEQTYAKKAKAYGEELVEMYKKEAEKAGVSHVETFVHFGTPKTTFNKKITR
                     NFEPDLILVGATGLSATEQFILGSVSEYTAAHAPCDVIIVHAKPWRNRKTVEKL"
     gene            2403..2858
                     /gene="rpiB"
                     /locus_tag="IBJ56_001113"
     CDS             2403..2858
                     /gene="rpiB"
                     /locus_tag="IBJ56_001113"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HAM3417372.1"
                     /translation="MTVSKVAIASDHGGIELRKSIISYLESVGISYEEFGPEAPESVD
                     YPGLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHN
                     DTNVLALGARVIGPGLAEDIVKIWLETAYEGGRHANRVGQITAYEDSHA"
     gene            3056..3397
                     /locus_tag="IBJ56_001114"
     CDS             3056..3397
                     /locus_tag="IBJ56_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417373.1"
                     /translation="MSYQDRGMKKWGGFLLSEHTEAMQDAEPTLVWKEAMTTEFIESV
                     LASAMTHQSTLVIQKKPLNPESAPENDIIGRISGVENNTIYIKNSEGTVPLSFSAIRN
                     VEERSVEKWYK"
     gene            3410..4666
                     /locus_tag="IBJ56_001115"
     CDS             3410..4666
                     /locus_tag="IBJ56_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HAM3417374.1"
                     /translation="MHRAVIFCASILNRFFASVECVKRRLNPLEAYLVVMSNADRAGG
                     LVLAATPKMKQEHHIKTGSRMYELPTWDKRIIIAPPRMKLYLKVNAMIQAIFRRYVPA
                     EFIHVYSIDECFLDITGSHLLFGSTEEIVRKIQCDILEELRLYVTVGIGDNPLLAKLA
                     LDNVAKNRDDGIAEWRYEDVPETIWKIRHLDDVCGIGRRTAVRLQKMGIFNMYQLSQT
                     PPQVLKNAMGVVGEQLYYHAHGIDYSLLNEKYVPVSKSYGKSQILEKDYHVPAEVEIV
                     IREMVEEVAMRLRQNHVDTAVIHLSIGYSKYSIKKGFSHQAKIPPTSSSHALIPYFLQ
                     LFRRYDEREPVRSIAISCGKITLKTGLQLNLFEDATRTLNHEQLEITVDKIRSRYGFK
                     SLMHASSLLNGATGLKRSEMVGGHKG"
     gene            complement(4668..5480)
                     /locus_tag="IBJ56_001116"
     CDS             complement(4668..5480)
                     /locus_tag="IBJ56_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3417375.1"
                     /translation="MHKTIRSVDVYYEKYGEGIPIIMIHGFGPDSQLMIGCMEPVFDK
                     ESPFSRIYVDLPGMGKTENYDSIQNADHVLTLLLEFIEAVIPGEQFVLAGESYGGYLA
                     RGIAAKMPDRVLGVLLICPVIYPEKERRTLPEQKVMYQDDTFVRSLSKEDRAYFSKSG
                     VILTARNWNRFLAEVMAGMINADGEFLDRLSANYALSFDPDEKAQFDVPALFLFGRQD
                     DHVGYADGLTLLEKYPHASIAILDFAGHNLQIEQPKIFTTMVEDFLLRVKPE"
     gene            complement(5521..6216)
                     /locus_tag="IBJ56_001117"
     CDS             complement(5521..6216)
                     /locus_tag="IBJ56_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3417376.1"
                     /translation="MNSKRLVLIVEDEEGISNFISAVLTASDYSVIKAVNGKEALEQT
                     ASHSPDVVLLDLGLPDVEGLDVLRDIRVWSKVPIIVVSARDHEREKVTALDLGADDYI
                     TKPFGTSELLARIRTALRHIQPSSKEAPNDHIIRIQDLYIDDDRRLVKMGDKEIHFTP
                     IEYKILLLLARHAGKVLTHDFIIREIWGPYPSENQALRVNMSNIRRKIEQNPAEPAYI
                     LTEVGVGYRMAEE"
     gene            complement(6213..8903)
                     /locus_tag="IBJ56_001118"
     CDS             complement(6213..8903)
                     /locus_tag="IBJ56_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HAM3417377.1"
                     /translation="METNRPSPDALLVNLQEETDSSVGKLKIYFGFAAGVGKTYAMLS
                     DAKDQLAAGVDVVAGYIEPHAREETLRMLEGIPIIPPKAITHKNIALKEFDLDEALKR
                     KPELILVDELAHTNASGVRNKKRFQDVEELLQAGIDVYTTVNVQHIESLNDIVEGITK
                     VAVRETIPDYVFDEADRVKLIDIEPDELLKRLEQGKIYQPARAKTAMQNFFTRENLKL
                     LREIAMRKAADRISHEYDQTGVYPEKRASSKWLVCIGTSPSSAKLIRWTARTAEAFRA
                     PWTALYIENEENDYMTKAEKKCLRETMELAERLGAEIVTLAGHDIAETVAEYARLTGV
                     TNIVVGKSRRRMGLRSLFEDDFEDRLITHLDNVDMHIIPSSQPKTKKRRMKMRFKSFL
                     TWHDMAKMILLLTLATAICVGLSEFGIGDQNVIMVYILSVLIISRVTSGYVYGVMGSI
                     IGVMLFNFFFTTPLYTFNTIQAGYPVTFGIMLLVALITSALTVRIKTQASLAVERERR
                     TEVLYEINKRLLVTRNLKGIIDLTNEYILHLFSRSVIFYSADPAKSNKGIFVQAEGKE
                     DASALLSADEEAVAHWVFKNKKRAGAGTDTLMGAFGYYMPVMSQGKVLGVIGVSCSPE
                     DGPLTQDNRIFLRMISSQVALALERQYLSEEQRQIVIESAKEKMRSNLLRAISHDLRT
                     PLTGIVGASSALLEKETELDKETEHNLIKGIKDDSGWLIRMVENLLSVTRISEGLVSL
                     ERAPEAVEEIVGEAVGRIKKRFADRTIHVKVPRDLLMVPMDGTLIEQVLINLMENALR
                     HGGTGAEVWVDVTKTKQSAIFSVRDNGKGIPEKRLPDLFDTFAVEARERSDMSRGLGL
                     GLSICMSIIRAHDGTLEAKNNKHGGATFWFTLPLDGGDGK"
     gene            complement(8919..9491)
                     /gene="kdpC"
                     /locus_tag="IBJ56_001119"
     CDS             complement(8919..9491)
                     /gene="kdpC"
                     /locus_tag="IBJ56_001119"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
                     /protein_id="HAM3417378.1"
                     /translation="MKRFMQIWKPAVVGFLLLTLMCGVVYPGIVTIFASAAFHDKANG
                     SIIEEKRADGTTGKVGSAEIGQTFTKPEYLIGRAASDGVATNLNPTSEEQKQLVEKRI
                     AWWHKLDPTNNRVIPMDLVTASASGVDPDISEAAAAYQVDRISRERGISTKQVKEIIA
                     EHTSDRLLGFWGEPTVNVLQVNLALDRLKM"
     gene            complement(9506..11551)
                     /gene="kdpB"
                     /locus_tag="IBJ56_001120"
     CDS             complement(9506..11551)
                     /gene="kdpB"
                     /locus_tag="IBJ56_001120"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HAM3417379.1"
                     /translation="MMEKGIWKDALIQSTKKLSPKLQVKNPVMLLVYVGAILATSLYF
                     LGFFGISDEKSGYTLAIALILWFTVLFANFAEAIAEGRGRAQADSLKMARKDVLARKL
                     KNIDDKTDVIEIASNDLKKGDIVYVLANEQIPMDGEVIEGAASVDESAITGESAPVIR
                     ESGGDRSAVTGGTTLVSDWLVVRVTAVSGESFLDKMIAMVEGASRKKTPNEIALQILL
                     VTLSIIFLAVSATLLPFTEFASKQAGAGSAISITNVIALLVCLAPTTIGALLSSIGIA
                     GMSRLNQANVLAMSGRAIEAAGDVDVLLLDKTGTITLGNRKASEFLPVDGVTEQELAD
                     AAQLSSIADETAEGRSIVVLAKERFDIRGRDFAEMHAEFVPFTATTRMSGIDYQENTI
                     RKGAADAVRTYVTANGGTYPKECDAIVSKVAGAGGTPLVVVRNNKVLGVIYLKDIVKN
                     GVKERFLDLRKMGIKTIMITGDNPMTAAAIAAEAGVDDFLAEATPEAKLELIREYQRE
                     GHLVAMTGDGTNDAPALAQADVAVAMNTGTQAAKEAGNMVDLDSSPTKLIDIVRIGKQ
                     LLMTRGALTTFSVANDLAKYFAIIPVLFYGIFPQLEALNLMGLTSPTSAILSAIIYNA
                     VIIIILIPLSLKGVKYREMPAGKLLSRNMLIYGLGGLIAPFIAIKLIDMLLTVLGIV"
     gene            complement(11563..13248)
                     /gene="kdpA"
                     /locus_tag="IBJ56_001121"
     CDS             complement(11563..13248)
                     /gene="kdpA"
                     /locus_tag="IBJ56_001121"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HAM3417380.1"
                     /translation="MKYIVMQDAFFVVLLLVLAVPLGIYMYKVMIGEKVFLSRVLEPV
                     ERFGYRLMGVSEVGMSAKRYAVSVLAFSAVGFVFVMAVLMLQGFLPLNPEGMKGLSFS
                     LAFNTAASFVSNTNWQAYSGEAALSYFSQSIGLTVQNFVSAATGIAVLFAVIRGFIWK
                     KQKTIGNFWQDLFRVTLYILLPLSLILALLLVSQGVVQSFADYSVVETLENGAKQLIP
                     LGPAASQIAIKQLGTNGGGFFGANSAFPFENPSSFTNLIEMLAILLIPVALVVMFGRA
                     VKDSKQGRAIMTAMMIVFVIGVVAITISEQFAGPHYQGVATSGSMEGKEVRFGVGGSS
                     LFAASTTAASNGAVNAMHDSLTPLGGLVPMFFMQLGEVIFGGVGSGLYGMIGFIILTV
                     FIAGLLVGRTPEYLGKKIEPYDMKMVCLLILVPPLLTLFGTAVAVMMPSVQASVSASG
                     AHGFSEVLYAFTSMGNNNGSAFAGFAADTTFTNMVGAVMMLLARFIPLVAALYLAQNM
                     AGKSSVAASSGTLSTKNGMFIGLLIGVVVLVGALSFLPALALGPIADFFTTFK"
     gene            complement(13245..13334)
                     /locus_tag="IBJ56_001122"
     CDS             complement(13245..13334)
                     /locus_tag="IBJ56_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015455298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit F"
                     /protein_id="HAM3417381.1"
                     /translation="MGVVLVIAGIIGLGLLVYLFYVLFRGEDL"
     gene            13588..13893
                     /locus_tag="IBJ56_001123"
     CDS             13588..13893
                     /locus_tag="IBJ56_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417382.1"
                     /translation="MKTIMLVCSAGMSTSLLVTKMEKAAAEKGLEAKIFAVAEAEAAN
                     HLDEIDVLLLGPQVRFLEGNMKKKLEPKGIPLAVINSVDYGMMKGDKVLEQALELMK"
     gene            14028..15335
                     /locus_tag="IBJ56_001124"
     CDS             14028..15335
                     /locus_tag="IBJ56_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3417383.1"
                     /translation="MNGFIAFMEKYFIPYAAKIGGQRHLVAIRDGFITTMPLMILGSF
                     AVLINNFPIPAYQKFMNNLFGEGTWQAFGGNVWNGTFAILALLIAFTVAYNLAKSYDK
                     DPLSSAVVSVATFFTIGAIAPGADGVANTGGLGSTGLFLALIIAILSTEIFTRLSGSP
                     KLIINMPDGVPPAVSRSFAALFPAMITVSIFGLITAFFQAAGVTNLVISFYELVQEPF
                     MGLANSLPAALLLAFVSAFLWFFGLHGANIIDPFMQTINIPAIEANVKALEAGKELPY
                     IVNKPFFDSFVNLGGTGATIGLIIAIFIVARKHKAYMTVSKLSAAPGIFNINEPMMFG
                     LPIVLNPIMFIPYILAPLVLVTVAYFATAIGWVPACTIVTPWTTPPIIGGALATQSIA
                     GGVLAAVNLGLSILIFLPFAKIAQIQELRREKEALAAEGVTAE"
     gene            15372..15674
                     /locus_tag="IBJ56_001125"
     CDS             15372..15674
                     /locus_tag="IBJ56_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HAM3417384.1"
                     /translation="MDLEQTIMSLIVFGGNAKSDAMLAIDSAKKGDFAQADEQIAQAE
                     QALLEAHHSQTKLIQGEARGEKTEVSLLLVHAQDHLMNAITFKDLAKEIVDLYKNK"
BASE COUNT         4700 a         3675 c         2820 g         4527 t
ORIGIN      
        1 cataaagaaa accacgatac actaacttct tctctgaaat cgagcaaaaa atttcctccc
       61 aagcccatcc aagaacagaa taaatgaaga agtataggat aaacatatta atatccatct
      121 tttcatctcc tttttgtttt ctttttcaca atcaatttca ttataacaga aataagaact
      181 tcttaactaa attagtcaaa aagttccgct tgtttatatt ttggcaactt attcttcgct
      241 tctgagtacg catgctgaat taatgcgcga atcaagtctt tatctcgttc ttcttccaat
      301 aaaacagaaa tccaaactcg tttattcatg taataaccgg gaacgatggc tcgattttct
      361 gcgcgaagtt gctcactttt ttcggcatcg cacttcaagg ttaaaatcgg ctgcccttct
      421 ttattcgttc cgcgcattgc cattagctga tccaaaacgt gatagcgctc cgctccccat
      481 tcttctttaa acgaatactg gactccttta agaccactga tttccttctg tatccaagca
      541 aattcatcgc tcattgtgcg ggctccaaaa tcataatctt attgccatct gggtcaagta
      601 aattcagttc acgtccgccc cactcagcca cacgaggttc tggtgtctcc actcccgctg
      661 tttgaagttc ccggtacatc tcatccaaat tagtatcaca cgagaaaaca aactccactt
      721 tagattcgct tgcttcgccc catttgctat tattccaaac aataatcccg ggagcctttt
      781 cagaaaaacc taatttcgct ccgtcataat tgtcgtaccc ttcgaatact atcggaattc
      841 ccaatttttc gtgataaaac gcaaccaacg ccgccggatc ttgcgtggaa atatttgtac
      901 aaacaaattc attaatcatt ttaagcacct ccatatcgtt agtttaacaa agcatttacg
      961 tttttcattg tatatttgcg acattttgca gaaaaatttg cttcatttct tctggggtgt
     1021 gattactata tcgtttaaat tgtttaatta agtgagcctg gtccgtaaaa ccatgaagat
     1081 aagcaagctc agcgcccggc acacttggat tctcatataa tgcctgtaat actttttgga
     1141 aacgaataag ttttgctgtc tgttttggtg caagtcccat gtgtttttga aatagccgtt
     1201 ctaactgccg aacagataca gctcctaacg caagttgatt gggattttgt agtaacttat
     1261 caataccgtt taaaaaatca ggatggactt gcttgccaag catcattaat tttcgcagta
     1321 aaaattcttc taataaagct attctttcca tgttcgtcgt catttcagca aacctctctt
     1381 gaaaaaacga aacaaatcca gcaaacatct cttccggctc ttttacccga ttcatgctac
     1441 cagtcaagtc ctgttcgaca aataaaaata acgaccacgc ataaaatcgc acggcaaaaa
     1501 gctcggtatt actttcatcg tcagactcaa acggtgcatc actaacgcca acaaatatag
     1561 catccgtcac tagccctgtt ttactatcaa ttgtaaaaat aatatccgca cataaatcag
     1621 gaaccactaa attatttccc gggaaattct tatcatctgc ctcccaaaaa cagcgaatat
     1681 agcctgtaag aaccgcactc ggtagatatt ctttatagcc agcacgcttt ggtgtagcta
     1741 caatgggata aaacgtttct agctttgcca taaagagccc tccttttcct catagtacca
     1801 caaaattttc tctttaatca tgcttctttc ttttatttat gggtattaag taaataaggg
     1861 gaaaactttt gagagggtga tacaaaatgt ctgcttacaa acggattctt gttggtgtag
     1921 atggatcaaa tgaagcggaa gccgcgctaa gacgagctgt tcaatttgcc aaaatggatg
     1981 gcgctacgct tggtattggc tttgtcgcgg atgtgcgccg gattgcacca ttaatcgatt
     2041 atgaacaaac ctatgccaaa aaagccaaag cttacggaga agaattagtt gaaatgtaca
     2101 aaaaagaagc tgaaaaagct ggtgtctcgc atgtagaaac ttttgttcac tttggtacgc
     2161 caaaaactac cttcaataaa aaaataacgc ggaatttcga gcctgattta attttagttg
     2221 gtgcaactgg actttcagca acagagcaat ttattcttgg tagtgtgtct gaatatacgg
     2281 ccgctcatgc accttgcgac gttattattg ttcacgcaaa accttggcgc aacagaaaga
     2341 ctgtcgaaaa actctaattc atgtataatg aaggtattga ttatacggca ggaggagaaa
     2401 aaatgacagt tagtaaagtt gccattgctt cagaccatgg cggaattgaa ttacgaaaaa
     2461 gtattatttc ttatcttgaa agtgttggaa ttagttatga agaatttggc cccgaagcac
     2521 cagaatcagt ggattatccg ggactagcga ttaccgttag tgaaaaagtt gttaaccaag
     2581 aagttgaccg cggcatttta gtttgtggta cgggtattgg tatgagtatt gcagctaata
     2641 aagtaaaagg cattcgttgc gcgcttgttg gcgatacatt tagcgctcac gccacgcgcg
     2701 aacataatga tacaaatgtc cttgcgcttg gagcgagagt cataggccca gggctagcag
     2761 aagacattgt caaaatttgg ctagaaacag cgtatgaagg tggccgacac gcaaatcgtg
     2821 taggacaaat caccgcttac gaagatagcc acgcttaaaa aattataacg accaagtcta
     2881 attttacagg cttggtcttt ttttatgtcc actttattaa tagttcacaa atagtaattt
     2941 gttcccgttt tgctagcata aatgaggata tttacacatt gtaaataaga acgtttgttc
     3001 gtataatgta tttaagcaac agataattat ttaaaaatat tggaggtgtc atcatatgag
     3061 ctaccaagat cgcggcatga agaaatgggg cggtttttta ttaagcgagc atacagaagc
     3121 aatgcaagac gctgaaccaa ctttagtatg gaaagaagct atgactacag aatttatcga
     3181 aagtgtgcta gctagcgcga tgacacatca gtctacgctt gttatccaga aaaagccatt
     3241 aaacccagaa tctgctcctg aaaatgatat tattggtcgt atttcaggcg tggagaacaa
     3301 caccatttac attaaaaact ctgaggggac tgtcccgctt tccttctctg caattcgaaa
     3361 cgtagaagaa aggagtgtcg aaaaatggta caaatagaag attatagccg tgcaccgcgc
     3421 cgtgatattt tgtgcatcga tattaaatcg ttttttcgcc tcagttgaat gtgtcaaacg
     3481 tcggctgaat ccacttgaag catatttagt agtaatgagt aacgccgacc gggctggcgg
     3541 gcttgtttta gctgccactc caaaaatgaa acaagaacat cacatcaaaa ccggctcaag
     3601 aatgtatgaa ctgcccacct gggataaacg aattattatc gcacccccac gaatgaaact
     3661 ttatctaaaa gtaaatgcga tgattcaagc catttttaga cgttatgttc ccgctgagtt
     3721 tattcatgtt tatagtattg atgaatgttt tttagatatc accggatcgc atttgttatt
     3781 cggtagcacg gaagaaattg ttcgcaaaat ccagtgtgat attttagaag aattgcggct
     3841 atacgttaca gttggaatcg gcgacaaccc tcttcttgcc aaactcgcgc tcgataatgt
     3901 ggctaaaaac cgggatgacg gcattgctga atggcgctat gaagacgttc ccgagactat
     3961 ttggaaaatc agacatttgg atgatgtgtg cggaattggg cgtcggactg ctgttcgcct
     4021 gcaaaaaatg ggaatcttta atatgtatca actaagccaa acgccgccac aagtgttaaa
     4081 aaacgcaatg ggtgtagtcg gagagcaact ttattatcat gctcacggca tcgattatag
     4141 tcttttaaat gaaaaatatg ttccagttag taaaagctac ggaaaaagcc aaattcttga
     4201 aaaagactat catgtgccgg ccgaagtaga gattgtcatc cgcgaaatgg ttgaggaagt
     4261 agcaatgcgt ttacgccaaa atcatgtgga tactgctgtt attcatctaa gtatcggcta
     4321 cagtaaatac agcataaaaa aaggattcag ccatcaagct aaaatccctc ctactagtag
     4381 tagtcatgcg cttattcctt atttcctgca actatttaga cgttacgatg aacgcgaacc
     4441 tgtgcgctcc attgctattt catgcggtaa gattactttg aaaacagggt tgcagctcaa
     4501 tttatttgag gatgctactc gaactttaaa tcatgagcag ttagaaataa ctgtcgacaa
     4561 aatccggtcg cgttatggtt ttaaatcact tatgcatgca agcagtttat taaatggagc
     4621 gactggctta aaacggtctg aaatggttgg tggtcacaaa ggttaactta ttctggtttc
     4681 acgcgcaata agaaatcctc taccattgtt gtaaatattt ttggttgttc gatttgtaaa
     4741 ttatgtcctg caaaatcaag gatagcaatc gacgcatgtg gatatttttc aagcaatgta
     4801 agcccgtctg cgtatcccac atgatcatct tgacgcccaa ataagaataa tgccggcaca
     4861 tcgaattgcg ctttttcgtc tggatcaaag ctcagcgcat aattcgcaga taatcggtct
     4921 aaaaattctc catctgcatt aatcattccc gccatcactt ccgccaagaa acgattccag
     4981 tttcttgctg ttaaaataac gccacttttt gaaaagtacg ctcggtcttc tttggatagc
     5041 gaccgtacaa acgtatcatc ttggtacatg actttttgtt caggtagcgt tcttctttct
     5101 ttttcaggat agatgactgg gcaaataagt aagactccaa gtactctatc tggcattttc
     5161 gctgcgattc cgcgggctaa ataaccacca tatgattctc cggcgagtac gaattgctcg
     5221 cccggaatta ccgcttcaat aaattctagt aaaagggtga gtacatggtc agcattttgg
     5281 attgaatcgt aattctcggt ttttcccatt ccaggcaaat ccacataaat gcgtgaaaat
     5341 ggactttcct tatcaaagac tggctccatg caaccaatca tcagctgcga atcaggacca
     5401 aaaccatgaa tcattattat cggtattcct tcaccatatt tttcataata aacgtctacg
     5461 ctacggattg ttttatgcat attaattcct cctggcgttt atttttatca taacatatta
     5521 ttattcttct gccatccggt atccaacccc aacttctgtc aaaatgtatg caggttctgc
     5581 cggattttgt tcaattttac gtcggatatt actcatattg acccgaagtg cttggttttc
     5641 acttggataa ggtccccaaa tttcgcgaat aataaaatca tgcgtaagga cttttccggc
     5701 gtggcgagct aatagaagca aaattttata ttcaattggc gtaaaatgaa tttccttatc
     5761 gcccattttg acaagtcggc ggtcgtcatc aatatacagg tcttgaatgc gaataatatg
     5821 atcatttggc gcttctttgc tgcttggttg aatgtgtctt agggcagttc gaatccgcgc
     5881 cagtagttcc gatgtgccga atggtttcgt aatataatca tctgcaccaa ggtcaagtgc
     5941 cgtcactttc tctcgttcgt gatcgcgcgc ggatacaaca ataatcggca cttttgacca
     6001 aacacgaata tcacggagca cgtctagtcc ttctacatcg ggcaaaccta ggtcgagtag
     6061 cacaacatct ggcgaatggc ttgctgtctg ctctagcgct tcttttccat tcactgcttt
     6121 aatcaccgag taatcactcg cagtcaaaac agctgaaata aaattactga taccctcttc
     6181 atcttccaca attagcacaa gtcgtttgct gttcattttc catctcctcc gtctagtggc
     6241 aaagtgaacc agaatgtcgc cccgccatgt ttgttatttt tcgcttctaa agtcccgtca
     6301 tgcgctcgaa taatcgacat acaaatcgat aaaccaagtc ctaatccgcg tgacatatca
     6361 gaacgctctc tcgcttccac agcaaaagta tcaaataaat ctggcaagcg tttttccgga
     6421 atcccttttc cattatcacg aacactaaaa atcgcacttt gcttcgtttt cgtcacgtct
     6481 acccaaactt ctgcaccagt tccaccatga cgtagcgcat tttccattaa attaataagg
     6541 acttgctcaa ttaacgtgcc atccatcgga accataagaa ggtcgcgcgg tactttgaca
     6601 tggattgttc ggtccgcgaa acgttttttg attcgaccga cagcctcacc tacaatttct
     6661 tctacggctt ctggagctcg ttccaaactc actaaccctt cactaattct cgtcacagaa
     6721 agcaaattct caaccatccg aatgagccag ccagagtcat ctttaatacc tttaattaaa
     6781 ttatgttccg tttctttatc tagctcagtt tctttttcaa gtaaggcaga acttgctcca
     6841 acaataccag tgagcggtgt tcttaaatca tgcgaaattg cccgaagtaa attgcttctc
     6901 attttttctt ttgctgattc gatgacgatt tggcgttgtt cttcagataa atattgccgt
     6961 tctaaagcta gtgccacttg agagctaatc attcgtaaaa agatccgatt atcttgtgta
     7021 agtggaccat cttctgggga gcaagaaaca ccaataacac caagcacttt cccctgtgac
     7081 atcactggca tataataacc aaatgccccc attaacgtat ccgtcccagc acccgcccgc
     7141 tttttatttt taaataccca gtgggcaacc gcttcttcat ccgcactaag aagcgcactc
     7201 gcatcttctt ttccttctgc ttgcacgaaa atccctttat tacttttggc aggatccgca
     7261 gaataaaaaa taacggaacg gctaaataaa tgcaaaatat attcgttggt taaatcgata
     7321 attcctttta aattacgggt gactaatagc cgtttattaa tttcataaag cacttcggtt
     7381 cgacgttctc gctcaacggc caggctagct tgggttttaa ttcggacagt tagcgcactc
     7441 gtaataagag cgactaaaag cataattccg aacgtcaccg gatagcccgc ttgaattgta
     7501 ttaaacgtat aaagtggtgt cgtgaagaag aaattaaata acataacacc aatgatagaa
     7561 cccataacgc cataaacata gccgcttgtt acacgagaaa taattaacac ggataaaata
     7621 tataccataa taacattttg atcaccgatg ccaaattcac ttaaaccgac acaaatcgcc
     7681 gttgccaatg ttagaagtaa aatcattttc gccatgtcat gccaggttaa aaaactttta
     7741 aaacgcattt tcattcgacg ctttttcgtt tttggttggc tcgaggggat aatatgcata
     7801 tcaacgttat caaggtgcgt aatgagacga tcctcaaaat catcttcaaa taaagacctt
     7861 aaacccatgc ggcgacgcga tttcccgaca acgatatttg tcacaccagt caaccgggca
     7921 tactcagcta ctgtttctgc aatgtcatgt ccggcgaggg tgacaatttc agcgccaagc
     7981 cgttcagcga gttccatcgt ttcccgtaaa cattttttct ctgctttggt catataatca
     8041 ttttcttcat tttcaatata aagggccgtc catggtgcgc ggaaagcctc ggcagtgcgc
     8101 gctgtccagc gaatgagttt tgcagatgaa ggcgacgttc caatacagac tagccattta
     8161 ctactcgccc gtttctctgg ataaacacct gtttgatcgt attcgtgact aattcggtcg
     8221 gccgcttttc gcatcgcaat ttcacgcaag agttttaagt tttctctagt gaagaagttc
     8281 tgcatagctg tttttgcgcg cgccggttga taaattttac cctgttctaa ccgttttaga
     8341 agttcatcgg gttcaatatc aattaattta actcggtccg cctcatcaaa aacatagtca
     8401 ggaatcgttt cgcgaacagc tactttggtg atgccttcta caatatcgtt taaactttca
     8461 atatgttgca cattgacagt cgtatacaca tcaattcccg cttgaagcaa ttcttccaca
     8521 tcttggaaac gtttcttatt gcgtacacct gatgcgttcg tatgtgcgag ttcgtctacc
     8581 aaaataagtt ccggcttccg tttcaacgct tcgtccaaat cgaattcttt gagcgcaata
     8641 tttttgtgag taattgcttt tggtggaata atcgggattc cttctaacat tctcagcgtt
     8701 tcctcgcgag catgaggttc aatataaccc gccacgacat ccacacctgc tgctaattga
     8761 tctttggcgt cacttaacat ggcatatgtt ttcccaacac ctgccgcaaa gccaaaatat
     8821 atttttaatt tacccacgga tgaatctgtt tcttcttgca aattcaccag cagcgcatcc
     8881 ggacttggac gattcgtttc catatactcg cctccaactt acattttcaa tctatctaat
     8941 gccaaattca cttgtaagac gttcacagtt ggctcacccc aaaagcctaa caatcggtca
     9001 cttgtatgtt ctgcgataat ttctttgact tgtttggtgg aaatgcctcg ttctctagaa
     9061 attcggtcta cttgatatgc cgcagcagcc tctgaaatat ccggatccac gccacttgct
     9121 gatgctgtta cgagatccat tggaataact cgattgttcg tcggatctag tttatgccac
     9181 caagcaattc gtttttctac taattgtttt tgttcttcgc tagtagggtt taagtttgtc
     9241 gccaccccgt cacttgctgc ccgtccaatc aagtactcag gcttagtaaa cgtttggcca
     9301 atttcagcag aaccaacttt tccggtcgta ccatctgctc gtttttcttc tattatactg
     9361 ccatttgctt tgtcgtggaa agctgcactt gcaaaaatag tgacaatacc cggataaacc
     9421 acaccacaca tcaatgtcaa aagtagaaat ccaactactg ccggcttcca aatttgcata
     9481 aatcttttca tgttttctcc ccctcttaaa cgattcctaa aacagttaac agcatatcaa
     9541 tcaatttaat cgcgataaat ggagcaatca aaccgcccag accataaatc aacatatttc
     9601 tgctcagtaa tttcccggcc ggcatttcac gatacttcac gccttttaaa gaaagcggaa
     9661 ttaaaataat gataatcacc gcattgtaaa taatcgcgga taaaatagcg ctcgtcgggc
     9721 tggttaatcc cattaaatta agtgcttcaa gttgtgggaa aataccgtaa aacagcactg
     9781 gaataatcgc aaagtatttc gctaaatcat tagcaacact aaatgttgtc agtgcaccac
     9841 gcgtcattaa aagttgtttg ccaatccgca caatatcaat taatttagta ggactagaat
     9901 ccagatcaac catattccca gcttcttttg ccgcttgtgt tcctgtattc atcgcaacag
     9961 caacatccgc ttgtgcaaga gctggtgcgt cattcgtgcc atcacctgtc attgcaacca
    10021 aatgaccttc ccgttgatat tcacgaatta attccaattt tgcttctgga gttgcttctg
    10081 ctagaaaatc atcgacccct gcttccgccg caatggctgc cgcagtcatt gggttatcac
    10141 cggtaatcat aatggtttta atacccattt ttcgtaaatc aaggaaacgt tctttcactc
    10201 catttttcac gatgtctttt aaataaataa cgcctagcac tttgttattt cggactacta
    10261 caagcggtgt accaccagca ccagcaactt tgctcacaat tgcatcacac tcttttgggt
    10321 acgtcccgcc attcgccgtt acgtaagtac gaaccgcatc cgccgcacct tttcgaatcg
    10381 tattttcttg atagtcaatt ccgctcattc gggttgttgc agtgaaggga acaaattctg
    10441 cgtgcatttc agcaaaatct cggccgcgaa tgtcgaaccg ttctttcgct aatacaacaa
    10501 tactcctgcc ctccgctgtt tcgtccgcaa tcgaggaaag ttgcgccgca tctgccagct
    10561 cttgttccgt cacaccatcc actggcaaaa attcgcttgc tttgcggttt cccagtgtaa
    10621 tcgtcccagt tttatcgagc aaaagcacat ccacatcacc agctgcctca atcgcacgac
    10681 cactcatcgc taaaacattc gcttgattta accgactcat ccctgcaatt ccaatcgacg
    10741 aaagtagtgc accaatcgta gttggcgcca aacaaacaag caaagcaatc acattcgtaa
    10801 tcgaaattgc cgatccagca cccgcctgct tactcgcaaa ttcagtaaat ggtaaaagcg
    10861 tcgctgaaac tgccaaaaaa ataatcgaaa gcgttacaag caaaatttgt agcgcaatct
    10921 cattcggcgt ctttttccgt gaagctcctt ccaccattgc aatcatttta tctaagaaac
    10981 tttctccaga gaccgccgtc acacgaacaa caagccagtc agaaacaagc gtagttccac
    11041 ccgtcacagc acttctatcc ccgccagact ctcgaattac gggggcagac tccccagtta
    11101 tcgcactttc atcaactgaa gccgcacctt caataacctc gccatccatc ggaatttgtt
    11161 cattcgcaag gacatacaca atgtcgcctt ttttcaagtc attcgaagca atttcgatca
    11221 catcagtttt atcatcaata ttcttcaatt ttcgagctaa aacgtctttt cgagccattt
    11281 tcaaactatc cgcctgtgct cgaccgcgac cttccgcaat cgcctctgca aaattcgcaa
    11341 ataacactgt aaaccataaa atcagcgcaa ttgctagcgt ataaccagac ttctcatctg
    11401 aaatcccgaa gaaaccgaga aaataaaggc tcgttgccaa aatcgcacca acataaacaa
    11461 gcaacatcac cggatttttc acttgcagtt ttggagacag ttttttcgtc gactgaatca
    11521 gcgcatcttt ccaaatacct ttttccatca tttccattca cctcatttga aagttgtaaa
    11581 gaagtctgca atcggtccaa gcgcaagtgc tggcaagaaa ctaagtgcgc caacaagtac
    11641 cacaacacca attaaaagac caataaacat gccatttttc gtcgataacg tcccgctact
    11701 cgctgcaacc gaactctttc cagccatatt ttgcgctaaa taaagcgccg caacaagtgg
    11761 aataaaacga gcaagtaaca tcattactgc gccaaccata tttgtaaacg tcgtgtccgc
    11821 cgcaaatcca gcaaaagcac taccattatt atttcccatc gaagtaaatg catagaggac
    11881 ctcggaaaaa ccgtgcgccc cactcgccga aacagaagct tgcacacttg gcatcatcac
    11941 cgcaaccgca gttccaaaca aagtcaacag cggcggaacc aaaataagca aacaaaccat
    12001 tttcatatca taaggttcaa ttttcttccc taaatattcc ggcgtccgtc caaccaaaag
    12061 ccccgcaata aacaccgtca aaataataaa accaatcatg ccataaagcc cgctaccaac
    12121 accgccaaaa ataacctccc cgagttgcat aaagaacatt gggaccagcc caccgagcgg
    12181 agtcaaactg tcgtgcattg cgttcaccgc tccattcgag gctgccgtcg tggaagctgc
    12241 aaaaagcgac gaaccgccaa caccaaaacg aacctctttt ccttccatac tgccagaagt
    12301 cgcaacacct tgataatgtg gacctgcaaa ttgttcggag atagtaatcg caacaacacc
    12361 aataacaaaa acaatcatca tcgctgtcat aatcgcgcgt ccttgcttac tatccttcac
    12421 cgcacgccca aacatcacaa caagcgccac tgggataagt aaaatcgcca acatttctat
    12481 taaattagta aaactagatg ggttttcaaa cggaaacgcc gaatttgccc cgaaaaagcc
    12541 tccaccattc gttcccagtt gtttaatcgc aatttgactt gcagctggac caagcggaat
    12601 caattgtttt gctccatttt caagcgtctc cacaaccgaa taatcagcaa atgactgcac
    12661 cactccttgc gatactaaaa gaagcgccaa aataagcgaa agtggtaata gaatatatag
    12721 cgtcactcga aataaatctt gccaaaaatt tcctatcgtt ttctgtttct tccatataaa
    12781 gccacgaatt accgcaaata atactgcaat ccctgtcgct gccgaaacaa agttctgcac
    12841 cgttaaacca atcgactgcg aaaaataaga taacgccgcc tcaccagaat aagcttgcca
    12901 gttcgtattc gacacaaaac tcgccgccgt attaaatgca agactaaaac taagtccttt
    12961 cataccttcc gggttgagcg gtaaaaagcc ttgtagcatc aacaccgcca ttacaaatac
    13021 aaagccaact gcactaaaag caagtacgga tactgcataa cgcttcgccg acatgccaac
    13081 ctcactcaca cccatcaatc gataaccaaa ccgctcaacc ggctcaagca ctcgtgacaa
    13141 aaataccttt tccccaatca tcaccttata catataaatt ccaagaggca ccgccaaaac
    13201 taataacaat acaacaaaaa acgcatcttg catcacgata tacttcataa gtcctcacct
    13261 ctaaataaca cataaaataa atataccaac aaacctaaac cgattattcc agcaattact
    13321 agaacaacac ccattttccg ttcacccctt caccgtactc tttccaccac taatcctacc
    13381 aacaaacgca taaagacagt gttaagattc taaagctccg cataaagatt ccgttaatat
    13441 ctctatgtgt gtaaaattta cacacaaaaa aagccaatgt gtaagcaaaa aacaaaatga
    13501 aaaccctttt atagccacat ttaaagttgg cacggtactt gcatatataa taagtgttaa
    13561 gagaattatc tagaggagga aataatcatg aaaacaatca tgttagtatg ttcagcaggt
    13621 atgtctacca gcttactagt tacaaaaatg gaaaaagcag ctgcagaaaa aggccttgaa
    13681 gcaaaaatct tcgccgttgc agaagcagaa gcagctaacc atttagacga aatcgatgtt
    13741 ttattacttg gaccacaagt acgtttctta gaaggaaaca tgaagaaaaa attagagcca
    13801 aaaggtattc cattagctgt tattaacagt gttgattacg gaatgatgaa aggcgacaaa
    13861 gttttagaac aagcattaga gttaatgaag taaaaagagg gtaattacag ctagctagct
    13921 gaaaattata aaaaactaaa gaggtatagt aataacgcca tgttttagaa attatgtatt
    13981 cgtcttaacc cggctgttac tttatccctc aaaaaggaga ataaaaaatg aatggtttta
    14041 tcgcatttat ggagaaatat ttcattccct acgctgccaa aattggtgga caacgtcatt
    14101 tagtagcaat tcgtgatggt ttcattacaa ctatgccact tatgattcta gggtctttcg
    14161 ccgttttaat taacaacttc ccaattccag cttaccaaaa gttcatgaat aacttatttg
    14221 gtgaaggaac ttggcaagca ttcggcggaa acgtttggaa cggtactttt gctatcttag
    14281 cactacttat cgctttcact gtagcttaca acttagctaa atcttatgac aaagatccac
    14341 tttcttccgc agtagtttct gtagcaactt tcttcacaat tggcgcaatt gctccaggtg
    14401 cagacggcgt tgcaaacact ggtggtcttg gatcaactgg tcttttctta gcattaatta
    14461 ttgcaattct ttccactgaa atcttcactc gtttaagtgg tagcccgaaa ttaattatca
    14521 acatgcctga tggtgttcca ccggcagttt ctcgttcatt cgcagcttta ttccctgcaa
    14581 tgatcactgt ttctatcttt ggtcttatca ctgcgttctt ccaagcagct ggtgtgacta
    14641 acttagtaat ttctttctac gaattagtac aagaaccgtt catgggtctt gcaaactcct
    14701 tgccagcagc tttattattg gcatttgttt ctgctttcct ttggttcttt ggtttacacg
    14761 gtgcgaacat tatcgacccg ttcatgcaaa caatcaacat cccagctatc gaagctaacg
    14821 taaaagcact agaagctggt aaagaacttc cttacatcgt taacaaacct ttctttgact
    14881 ctttcgttaa cttaggcgga actggggcaa ctatcggttt aatcattgct atctttatcg
    14941 tagctcgtaa acataaagcg tacatgacag tttctaaatt gtctgcagcg ccaggtattt
    15001 tcaacattaa cgaaccaatg atgtttggtc ttccaatcgt cttgaatcca attatgttca
    15061 ttccgtacat cttggcacca cttgtacttg taactgtagc ttactttgca acagctattg
    15121 gttgggtacc agcttgtact atcgtaactc cttggactac accaccaatt atcggtggag
    15181 cacttgcaac acaaagtatc gcaggtggcg tacttgcagc tgtaaactta ggtctatcta
    15241 tcctaatctt ccttccattc gcgaaaattg ctcaaattca agagctacgt cgtgaaaaag
    15301 aagcacttgc tgctgaaggc gttactgctg aataattttt aaaaaccaaa actttaagga
    15361 cgtgtttaca gatggattta gagcaaacta ttatgagctt gatcgtgttc ggtggtaacg
    15421 ctaaaagcga tgctatgtta gccattgatt ccgctaaaaa aggggatttc gctcaagcag
    15481 acgaacaaat cgcccaagca gaacaagcac tacttgaagc gcatcattct caaacaaaac
    15541 ttatacaagg tgaagcacgt ggcgaaaaaa cagaagtttc ccttctactc gttcacgcac
    15601 aagaccactt aatgaatgca atcactttca aagatttagc gaaagaaatt gtagaccttt
    15661 ataagaataa ataaaaacag ggttgtcata tatgtattga ccccctaaag ttaaactatt
    15721 aa
//
LOCUS       DABQVC010000050        15690 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.050,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000050 DABQVC010000000
VERSION     DABQVC010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15690
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.050"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(50..829)
                     /locus_tag="IBJ56_001126"
     CDS             complement(50..829)
                     /locus_tag="IBJ56_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen family hydrolase"
                     /protein_id="HAM3417385.1"
                     /translation="MWKLALCQTDVVFKYPDANYARIEKAIVEAAKNGADIAVLPEMW
                     NTGYALNELAGVADLNGERTKEFLATLSEKHQIAIIGGSVSISEGTKFSNTMYAFDKY
                     GGLLSSYKKVHLFQLMNEHLYLEAGNDKNLFRLDGVSCAGFICYDIRFPEWIRKHTSE
                     GSEVIFVSAQWPAERVTQWEQLLIARAIENQAFVVAVNRVGDDPNNHFNGHSLVIDPL
                     GNIVAHGGEDEGNIYAEIDLKLVAETRGIIPVFTDRRPELY"
     gene            complement(919..1581)
                     /locus_tag="IBJ56_001127"
     CDS             complement(919..1581)
                     /locus_tag="IBJ56_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3417386.1"
                     /translation="MSLFFEEWGPILWQGFLETLTMTGITLVISLAIGLPLGVFLTLT
                     RKGGQSENLVAYSILNWVINILRSLPFIILLFLMIPVTRFVVGTTIGIQGVIMPLVVF
                     TAPYIARLMESALLEVDRGVVEAYQAMGISTPKIIWSVVIREARSGIVLGLTIATIGL
                     IGATAMAGLVGAGGLGTIAYQYGFQRFEPTVMYTTIIILIIMVQALQSFGNFLSRRLK
                     KD"
     gene            complement(1578..2594)
                     /locus_tag="IBJ56_001128"
     CDS             complement(1578..2594)
                     /locus_tag="IBJ56_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HAM3417387.1"
                     /translation="MIELHQVSKSFNVNGKTVEAVKNVSITVEKGEIFGVVGYSGAGK
                     STLVRCINLLERPDAGQVVIDGKNLSTLSSKELRVARRKIGMIFQGYNLLKTATVYDN
                     IAKPLKLEGVPKDEIETRVNKYLSIVGLEDKRNNYPSQLSGGQKQRVAIARALAHEPE
                     ILLSDEATSALDPETTEAILQLLLKINAELGITIFLITHELDVIQRICDRVAVMENGH
                     LVEQGTVLDIFTKAKHATTKRFVGSEASFDIPQDLLEKYVATGKLVSLHFIGDEADEP
                     ALALVSRKFDVLPSILAGGIDHLKNGTLGKLLVHLKGDEVEYSKAISYLKESGVVVEE
                     VELL"
     gene            complement(2609..3430)
                     /locus_tag="IBJ56_001129"
     CDS             complement(2609..3430)
                     /locus_tag="IBJ56_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HAM3417388.1"
                     /translation="MRKLTKGLGILLASSLVLGLAACGGGSDDKALSTEKITIGTTAG
                     PHQQIAEEVQKLAKKDGLEIKIKTFDDYNTPNTALNDGDLDANNYQTIPFLEQQKKDK
                     GYKLDVAFKTVAFPMGIYSNDIKDLKNLKKGDKIAVPNDPSNEYRGLKLFEDAGVIKL
                     KDGVEEKATKKDIAENPLDLEIVELEASQIPAQLDEVAAAAINTNFAMGAGLSINKDA
                     IYHEPTKDNPYPNVFVVRSANKDDEVVKTLEKYYHSDEVKAFIEKEFNGSVVPAF"
     regulatory      complement(3539..3658)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            3811..4992
                     /locus_tag="IBJ56_001130"
     CDS             3811..4992
                     /locus_tag="IBJ56_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HAM3417389.1"
                     /translation="MKISKRLQNLPDQFFSSLVEKVGKKVAEGHDVINLGQGNPDQPT
                     PKHIVEAMKTASEKPLNHKYSLFRGKHELKQAAADFYAREYNVTIDPDTEVAILFGTK
                     TGLVELPMCLMDPGDTMLLPDPGYPDYLSGVVLGEVQFEKMPLIAANNFLPDFTKIPE
                     DIAEKAELMYLNYPNNPTGAVATADFFEETVAFAKNHNIVVAHDFAYGGIGFDGKKPI
                     SFLETNGAKEVGIELYTLSKTYNMAGWRVGFAVGNSEVIEAINLIQDHMYVSLFPGIQ
                     DAAIEALTGDQTCVGELTARYESRRDVFISACKKIGWEAVAPTGSFFAWMPVPENFTS
                     SEFADYLLEEVSVAVADGSGFGEFGEGYVRVGLLMDEERLEEAVTRVSKLHLFDKVTQ
                     Q"
     gene            5205..5918
                     /locus_tag="IBJ56_001131"
     CDS             5205..5918
                     /locus_tag="IBJ56_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3417390.1"
                     /translation="MAEKKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE
                     EVQPDLILLDIMLPGRDGIEVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVT
                     KPFSNRELIARVKANLRRHSQVSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIEL
                     THREFELLHYLAKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHP
                     AWLVTRRGVGYYLRNPEQE"
     gene            6103..7935
                     /gene="walK"
                     /locus_tag="IBJ56_001132"
     CDS             6103..7935
                     /gene="walK"
                     /locus_tag="IBJ56_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     WalK"
                     /protein_id="HAM3417391.1"
                     /translation="MHKMRFFQSVQFKLVIMYLLLIIVAMQVIGAYFVRELEGQLEKN
                     FQDSITNSITLLDYNAREEIIKNSDNSVKLQNDIRELLVDYSRASSNLIEVRIVDDKG
                     KILGTSNLNNQGIVGQKSNDPLVKRTLSLGTTSEDKIYKDESNKNNRVWVNVSSIKNK
                     GQVIGAIYLVADIESVYKQVDDITNIFITGTLIAMIITAVLGILLSRTITKPIIEMKR
                     QAYAMARGNYSRKVKVYGVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMT
                     DGVIATDRRGKVILINTPAEKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLT
                     MDRSTLDKPYVLRANFSVIQRETGFNNGVIAVLHDITDQEKVDQERRDFVSNVSHELR
                     TPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQL
                     EKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNAN
                     KYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTG
                     LGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLPYSDLPEDDWE"
     gene            7932..9254
                     /locus_tag="IBJ56_001133"
     CDS             7932..9254
                     /locus_tag="IBJ56_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAM3417392.1"
                     /translation="MMKKTGFRSFILTILVVLSIVLSYFIWKGQPDYEAINVKEVEKT
                     TIDKTMTTSQVFKPYKLAVNANENNYQSLDADLLNELMAQGKAFSFSEVVLASKKSSE
                     DYEKLIHKNGTIEIIFPNNIPFSIFAQIFQVEGEGLESAFFNRIVFDINKTDTGLHSV
                     YFTNDDQENIYQSSLQNKDIDKIEKIVKKNESKLTQNDKLISNKRNLFLSSEKTKLNR
                     KKYIIDSLEINLFTSALFQDSGTVKSEGNTYTDGSSVIEMDTDNKVLEYVNPSQERTN
                     PEDLSSVKRAGLIQDSFNFVNDHAGWTGDGAYYFTGYAAESATTNFSLFIDNLQVYNE
                     NGMADISVTEGLEAVYKYMRPFFRLDTDVPGEKKEVTLPSSYSVYSALAQNPNVKAEE
                     IEDIVPGYHMTRSESSGMNRLVTLEPTWLYKYHDKWFIFQPDAEKAGE"
     gene            9257..10096
                     /locus_tag="IBJ56_001134"
     CDS             9257..10096
                     /locus_tag="IBJ56_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417393.1"
                     /translation="MDWRKTQMIFIVTLLILNVFLAVIFFNKQLSDDPDTLGNETLEE
                     RLKADNISHPDLSTKPTSGSIFTTERAAFTTKDVSDLTGQAITLKDNNKQIYSVLQTP
                     VKAGKKGSNPEFQKFMESDVYRGESYQFWNYDKDARTLTFNQLINNNMVLFDEAGQIT
                     FYLDQDDRVISYEQTWMSKQDDLKDKTNLMSATDALEAVYQHGELKQDSDVVSATFGY
                     YTTVQLPSGNVYFPVWCFEVKHSGETNYVLVNAKDEQVINQSDNKSTTEPGTELSSRQ
                     KTK"
     gene            10216..11046
                     /locus_tag="IBJ56_001135"
     CDS             10216..11046
                     /locus_tag="IBJ56_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAM3417394.1"
                     /translation="MFANKILTEKDTDQIRFSILASGSSGNATLVETGDQKILIDCGL
                     SGKKMEGLFAQVGRDMNDLDAILITHEHSDHIKGLGVLARKYKLPIYANAKTWKAMDN
                     MIGEVSSDQKFQFDMETVKTFGSMQVESFGVSHDAIEPMFYIFHKGNKKFVMITDTGY
                     VSDRMKGHIAGADAYLFESNHDVEMLRMGRYPWNVKRRILGDEGHVSNEDAAIAMSEV
                     ITDQTKRIYLGHLSKDNNMKELARMSVTQTLMAEGIDVGGKLEIFDTDPDNATSIFTI
                     "
     gene            11144..12646
                     /locus_tag="IBJ56_001136"
     CDS             11144..12646
                     /locus_tag="IBJ56_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HAM3417395.1"
                     /translation="MDEKEKNLNENSENESTPKREVEDTLHTPESAQPVQETPIVEGV
                     TPEGEKFAGATEDAAEASSTNAFFEEASNKEPEPARPAPGPRRAGTTGGGAVPPNRVN
                     NGGSGNGNGEPPKRGKHFIGYFLTALIGVIIGGLIIFFVAWDNGDNADTTSNSNNKAT
                     KVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKAN
                     GKAYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFG
                     DSDSLKLGEPAIAIGSPLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTD
                     AAINPGNSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVE
                     RPSLGVSLRDVDTIPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVEL
                     NGQKVTNSMTLRKILYGNDVKIGDKVKVKYYRDGKEKSTDIKLEAAKTTT"
     gene            13334..13813
                     /gene="rlmH"
                     /locus_tag="IBJ56_001137"
     CDS             13334..13813
                     /gene="rlmH"
                     /locus_tag="IBJ56_001137"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HAM3417396.1"
                     /translation="MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAP
                     EVLSDAEMKQVKDKEGARILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSK
                     VTFVIGGSLGLSEAVLKRSNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK"
     gene            complement(13845..14708)
                     /locus_tag="IBJ56_001138"
     CDS             complement(13845..14708)
                     /locus_tag="IBJ56_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3417397.1"
                     /translation="MDIENMKAFNKVAELKSISAAANELHHLQSNMSNKIKNIEKQFQ
                     TQLFFRHSNGVEPTKEGEKIYQQFKKMILLWEETIDIINNEEETISIGITQSSLPMEF
                     NTIIKEFYQQFPNKKLSIVSGSTSELIPKIANRELTIAYVAELEKENLFQDSQIISQT
                     LSWDKLVFAGNTAGKSVQKILAEERLYVFSKQCYSYRALAALINDINIPNVSISEINI
                     PETLVEICNNELGIGIIPESIALNYHFLNYETLPTEYASLRKTLIYHADHTISNGEKW
                     LIEKSKPAFKS"
     gene            14827..15564
                     /locus_tag="IBJ56_001139"
     CDS             14827..15564
                     /locus_tag="IBJ56_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HAM3417398.1"
                     /translation="MNTTIQQLVKHVSVREFKNERLSDEIKQHLLTAARSASSSHFVQ
                     SFSILEITDEKLRKELAEITNSASYVNQTGTFYVFVGDLYRQSKLLLENNRTLDGLRN
                     MESLLVSVIDATIAAQNMVIAAESLDLGICYIGGIRNDIEKVAELLNLPPFTIPVFGL
                     TVGVPEYKNQVKPRLLLENQVGENQYPHEQFTDLKAYEELTKDYYALREKNQHQTSWG
                     DKNVAFFEEIRRPEIAGFLKKQGFTLD"
BASE COUNT         5172 a         2706 c         3185 g         4627 t
ORIGIN      
        1 tttaatgaga aaaagatgca aaaaatatta ttttgcatct tttagctatt tagtaaagct
       61 caggtcgtct atctgtgaaa actggaatga tgcctcgcgt ttcagcaaca agttttaagt
      121 caatctcagc ataaatattt ccttcgtctt caccgccatg agcgacaata tttccaagtg
      181 gatcaatcac aagtgagtgc ccattgaaat gattattagg atcatcgcca actcgattga
      241 ctgcaacgac aaaagcttga ttttcaatag cgcgtgcaat aagtagttgc tcccactgag
      301 taacacgttc ggctggccac tgagctgaaa caaaaatgac ttccgatcct tctgaagtgt
      361 gtttgcgaat ccattctgga aatctaatat catagcaaat gaaaccagcg caagaaacac
      421 cgtccagtcg aaatagattt ttatcattcc cagcctctaa atagagatgc tcattcataa
      481 gctgaaataa gtgaaccttc ttatatgaag aaagtagtcc accatatttg tcgaaagcat
      541 acattgtatt agaaaatttg gttccttccg aaatagagac cgagccaccg ataatagcaa
      601 tttggtgttt ttcagaaagt gttgctaaaa attctttcgt tctctcccca tttaaatcag
      661 caaccccagc taattcattt aaagcataac ctgtattcca catttctggt aaaactgcga
      721 tatctgcccc attttttgca gcttcaacta tagctttttc aatccgtgca tagtttgcat
      781 caggatattt aaaaactaca tcagtttgac ataatgccaa cttccacatg ttcttcgctc
      841 cctttttctt ttaaaaataa cacaagcttg gtgacgagtc catattggaa cacttcgcac
      901 caagctctaa gtagtgaatt aatctttttt aagacgtcta gataagaaat taccgaatga
      961 ttgtagtgct tgtaccatga taattaaaat aataatggtt gtatacatga cagttggttc
     1021 gaaacgttgg aaaccatatt ggtaagcaat tgttccgagt ccgccagcac caacaagtcc
     1081 agccattgca gtcgcgccga ttagaccgat tgtagcgata gttaagccaa gaacgatacc
     1141 agaccgagct tcgcgaataa cgacactcca aatgattttt ggtgtagaaa ttcccatagc
     1201 ttgataggct tccacaactc cacggtccac ttccaaaagg gcggactcca ttaaacgggc
     1261 aatataaggt gccgtaaata ccacaagtgg cataataacc ccttgaatcc caatagtagt
     1321 cccaacaaca aaccgtgtta cgggaatcat taagaataac aaaataataa acggtaatga
     1381 acgtaaaata ttaataaccc agtttagaat actgtaggca accaggtttt ctgattgacc
     1441 acctttacgc gttaatgtta aaaatacgcc aagtggtaaa ccaatcgcaa gtgaaatcac
     1501 gagtgtaatc ccagtcatcg taagcgtttc tagaaatcct tgccaaagta tcgggcccca
     1561 ttcttcaaaa aacaaactca tagtaactcg acctcctcaa caacgactcc agattctttc
     1621 aaataagaaa tagctttact gtattcaact tcgtcccctt ttaaatgaac gagcagtttt
     1681 ccaagtgttc cgtttttcaa atgatcaatt cccccagcta aaatgcttgg aagaacgtcg
     1741 aatttacgtg atacaagagc gagcgcaggt tcatccgctt cgtctccaat aaaatgaaga
     1801 gaaaccaatt tcccagtcgc aacatatttt tcaagcaaat cttgcgggat atcgaaacta
     1861 gcttccgatc ccacaaagcg cttggttgtc gcgtgttttg ctttcgtgaa aatatcaaga
     1921 accgtacctt gttccactaa atgaccattt tccattacag caacccggtc acaaatacgt
     1981 tgaatgacat caagttcatg tgtaattaag aaaatcgtaa tgccgagttc cgcattaatt
     2041 ttaagtaaca gttgcaaaat tgcttctgtt gtttcagggt ccaaggcgct tgttgcttca
     2101 tcgcttaaga gaatttctgg ctcatgcgca agagcacgag caatcgccac acgctgtttt
     2161 tgaccgccag aaagttggct tggatagttg tttcgtttat cctctaagcc aacaattgac
     2221 aagtatttat ttacgcgcgt ctcgatttcg tcttttggaa cgccttctaa ttttaatggt
     2281 ttggcaatgt tatcatagac agttgcggtt tttagtaggt tatatccttg gaaaatcatg
     2341 ccgattttcc ggcgagcgac acgaagttct ttgcttgata gggtagataa gttcttccca
     2401 tcaatcacaa cttggccggc atctggacgt tcaagcaggt tgatgcaacg aacaagggta
     2461 cttttcccgg cgccactgta accaacgaca ccgaaaattt ctcctttttc tactgtaata
     2521 gaaacatttt tgacggcttc tacggttttt ccatttacgt taaatgattt tgaaacttga
     2581 tgtaattcga tcaaaataaa acaactccct agaatgcagg tactacagac ccattaaatt
     2641 ctttttcaat aaatgctttt acttcatctg aatggtaata tttttctaat gtttttacga
     2701 cttcatcgtc tttgttggca ctacgaacaa cgaaaacgtt tggatatgga ttgtcttttg
     2761 taggttcgtg gtaaatggca tctttattaa tagaaagtcc agcgcccatt gcaaagttag
     2821 tattgatagc tgcggctgca acttcatcta attgtgcagg tatttgagaa gcttcaagtt
     2881 caacgatttc aaggtcaagc gggttttcag caatgtcttt tttcgttgct ttttcttcca
     2941 caccatcttt taatttaata acgccagcat cttcaaacag ttttaaacca cggtattcgt
     3001 tacttggatc atttggaacg gcaattttgt cgcctttttt aagatttttc aagtctttaa
     3061 tatcgttgga gtaaatgccc attgggaatg ctactgtttt aaaagcaacg tctaatttgt
     3121 agcctttatc tttcttttgt tgctctaaaa atggaattgt ttggtagtta ttcgcatcca
     3181 aatcaccatc atttaaagct gtatttggcg tgttataatc atcaaatgtt ttgattttga
     3241 tttcaagacc gtcttttttc gctaattttt gaacttcttc agcgatttgt tggtgaggtc
     3301 ctgctgttgt tccaattgta attttttctg tgcttaaggc tttgtcgtca ctgcctcctc
     3361 cacatgctgc taatcctaaa acaagacttg atgcaagtaa aattcctaac ccttttgtta
     3421 attttctcat cttttttcct ccctagtatg ttgtgtgatt atccagattt attcatgaaa
     3481 acaataaaaa acttctctat ttagaataga gaagtggaaa gtcgaacata tccagctcct
     3541 cttatctacc aaaatggaat acaccatttt gctggaatta gcaccttcac tttacgctta
     3601 aataaagtta ggttgccggg cttcatcggg ccagtccctc tgccgctctc gataagagaa
     3661 aatattttag aaaaacctgt tagttaaaaa tatacgcaca ttaccttaat ttgtcaatgc
     3721 ttttttaagt tttaaaaaaa tcatactgga caaatacttc agaaaacttt actattttaa
     3781 tcaatgaaac ttgaaaagga cgggtgtaaa atgaaaattt ccaaacgctt gcaaaattta
     3841 ccagatcagt ttttctctag ccttgttgaa aaagttggaa aaaaggtggc agaagggcat
     3901 gatgtcatta atttaggaca aggaaaccca gaccagccaa cacccaaaca tattgtggaa
     3961 gcaatgaaaa cagcttcaga aaaaccactt aaccacaaat attctttatt tcgaggaaaa
     4021 catgaactaa aacaagccgc tgcggatttt tacgcgcgtg aatataatgt aacgattgat
     4081 ccagacacgg aagtagctat tttgtttggg acaaaaacag gcttagtgga gctgccgatg
     4141 tgtttgatgg atccaggtga tacgatgctt ttacctgatc cgggctatcc tgattatttg
     4201 tcaggagtag tgttaggtga agttcaattt gaaaaaatgc cgcttattgc cgcaaataat
     4261 tttttaccag atttcactaa aattccagaa gacatagctg aaaaagctga attaatgtat
     4321 ttaaattatc ctaataatcc aactggcgct gtggctacgg cagatttctt tgaagaaaca
     4381 gtcgcttttg ccaagaatca taatatcgtt gttgcgcacg atttcgcata tggaggtatt
     4441 ggctttgacg gtaaaaaacc aattagtttt ttagaaacaa acggtgcaaa agaagttgga
     4501 attgaacttt atacactttc gaaaacatat aatatggctg gctggcgcgt tggttttgca
     4561 gttgggaaca gcgaagttat tgaagctatt aatcttattc aagatcatat gtatgtaagt
     4621 ctttttccag ggattcaaga tgctgcaatc gaagctttaa caggagatca gacttgtgtg
     4681 ggtgaattaa ccgctcgtta tgaaagtcgc agggatgtct ttatttctgc ttgtaagaaa
     4741 attggttggg aggcagttgc gccgacgggt tcgttctttg cttggatgcc agtcccggaa
     4801 aattttacaa gtagcgaatt tgctgattat ctgctagaag aggtcagtgt tgccgttgcg
     4861 gatggtagtg gctttgggga gtttggtgaa ggttacgtcc gcgtaggtct tttaatggat
     4921 gaagagcgct tggaagaagc agtaacgcga gtttccaaat tgcatttgtt cgataaagtt
     4981 acacagcagt agccaattta tccaatttta agagaaaatc gcttgtaata attcagataa
     5041 ttaatgggat gtgttataat tggttagtaa gtctattctt agcatgttgt tttatgaagg
     5101 caggccagaa tttaaaatgt ttagtgagat ttttatgcat taaataaaaa gtatctgtcc
     5161 cggttaaagc cggcgaaatc caggaatgag aggactgtaa aaaaatggca gaaaagaaaa
     5221 ttcttgtagt agatgacgaa aaaccgattg cggatatagt taagtttaat ctaaataaag
     5281 aaggctttga tgtatattgc gcctatgatg gcgatgaagc gttagaactt gtagaagaag
     5341 ttcagccaga tttaatttta ctggatatta tgcttccagg tcgtgatggt attgaggtat
     5401 gtcgtgaagt acgtaaaaaa tatgatatgc caataattat ggtaacagcg aaagattcag
     5461 agattgacaa agttatcgga ctagaacttg gtgcagatga ctacgtaacg aaaccattta
     5521 gtaatcgcga gttaattgct cgagtgaaag ccaatttgcg ccgtcacagc caagtcagct
     5581 caaatgcagc cgaggaagaa gaaaacagcg aactagaaat tggttctttg attattcatc
     5641 cggatgcata tgtggcttct aaacgtggag aaacaatcga actaacacat cgtgaattcg
     5701 aattactaca ttatttagca aaacatatgg gacaagtcat gacacgtgaa catttacttc
     5761 aaaccgtttg gggctatgac tacttcggcg atgttcgtac ggtggatgtt accgttcgtc
     5821 gtttacgtga gaaaattgaa gataacccaa gtcacccagc atggttagta actagacgcg
     5881 gagttggcta ttatttacgc aatccagaac aagaataaat aacaagaagt ggtcgccgaa
     5941 gtgaaaaaaa ttcggtgacc actttttttg ggtattttcg cttacttagt tactattttt
     6001 ataaataaat cgacccaatt aacaggaaaa acaatacgtc tacaccataa catatggtat
     6061 actaatttaa atatattacc ccgaatagga gtagaaagac ttatgcataa aatgagattt
     6121 tttcagtccg tacaatttaa gttagttatt atgtatttgc tactaattat cgttgcaatg
     6181 caagtaatcg gcgcgtattt tgtacgtgag ctggaagggc aactggagaa aaattttcaa
     6241 gattctatta cgaatagtat tacgctttta gattataacg ctagagaaga aattattaaa
     6301 aatagcgaca actccgtcaa gttacaaaat gatattagag aactcttagt cgattattct
     6361 cgcgcaagta gcaatttaat cgaagtaaga attgtagatg acaaaggaaa aattctcggc
     6421 acatctaatt taaataacca aggaattgtt ggacaaaaaa gcaacgatcc acttgtaaaa
     6481 cgaacattat cacttggaac gacttctgag gacaaaatct ataaagacga atcgaataaa
     6541 aataaccgcg tttgggtgaa cgtatcctcc atcaaaaata aaggccaagt gataggggct
     6601 atttatcttg tcgccgatat cgaaagtgtc tataaacaag ttgatgatat tacaaacatt
     6661 ttcatcacag ggactttgat tgcgatgatt attacagccg tccttggaat tctattatca
     6721 agaaccatta ctaaaccaat tatcgaaatg aaacgtcaag cttatgcgat ggctcgcggc
     6781 aactatagcc gcaaagttaa agtatacggt gtcgatgaaa ttggtgaact ggctgattct
     6841 tttaatacac taacaaaacg agtccaagaa gcccaagcaa tgactgaagg ggagcggcgc
     6901 aagttatcct ctgtactcgc atatatgact gatggcgtaa ttgcaacaga ccgccgcggg
     6961 aaagtaattc tcattaatac gccagcagaa aaaatgcttc gcgtgaaaca tgaaagtgcg
     7021 aatgggcgct cgattattga tgttttagac atcggagaca cgtaccaatt tgaagattta
     7081 atggaagtag atgggtcact aacaatggac cgtagtactc tcgacaaacc gtacgtgctt
     7141 cgtgccaatt tctcggtcat tcaaagggaa acaggcttta ataatggggt tatcgcggta
     7201 cttcacgata ttaccgatca agaaaaagtc gaccaagaac gtcgcgattt cgtatccaat
     7261 gtatcacatg aactaagaac cccacttacc agtatgcata gctatttaga agcattaagc
     7321 gacggcgcgt gggaagataa agaaatcgct ccacgtttcc ttgaagtaac gcaaaatgag
     7381 accgaacgaa tgattcgtct cgttaacgat ctcctcaaac tttccagaat ggatggcggc
     7441 agagaacaac tcgaaaaaag cttcgtgaac tttacggatt tctttaacca tattattgac
     7501 cgttttgaaa tgatgaaaaa agaaacaatc atgttcaaac gccatattcc aagagagcca
     7561 gtcatcatcg aaattgatga agataaagta atgcaagtgc ttgataatat tatttctaac
     7621 gccaataaat attcaccgga tggtggccgc atttccttct atctgaaaaa atttgaagat
     7681 gaaattgaag taagcattgc cgatgaaggt ttaggcgtac cagacgagga tttagcaaat
     7741 gtgttcgacc gattcttccg tgtagacaaa gcacgctcga gagaaatggg aggaacaggg
     7801 ttaggactcg ctattgctcg agaagttatc gaagcacatg gtggtcgaat ttgggccgaa
     7861 cgtaataaaa ccaaaggaac cataattaaa ttcaccctgc catacagtga cttaccggag
     7921 gatgattggg aatgatgaaa aaaacaggat ttcgctcatt tatactaacc attttagtcg
     7981 tactcagtat tgtcctaagc tactttattt ggaagggaca acctgattac gaagcaatta
     8041 acgtaaaaga agtggaaaaa acaaccattg acaagacaat gacaacatcg caagtattca
     8101 aaccatacaa gctagctgta aatgcaaatg aaaataatta ccaaagttta gatgctgatt
     8161 tattaaacga actaatggca caaggtaaag cctttagttt ctcggaagta gtattagcta
     8221 gtaaaaaaag tagtgaagac tatgagaaat taatccataa aaacggaact atcgagatta
     8281 ttttccccaa taatattccg ttctctatct ttgctcaaat ttttcaagta gaaggggaag
     8341 ggcttgagtc agctttcttt aatcgaattg tttttgatat taacaaaacg gatactgggc
     8401 tacattcggt ttatttcaca aatgacgatc aagaaaatat ttaccaaagt tctttgcaaa
     8461 ataaagacat tgataaaatc gaaaaaattg ttaaaaagaa cgaaagcaag ctgactcaaa
     8521 atgataagct aatttcaaac aaacgcaatc tttttctaag ctctgaaaaa acgaaactaa
     8581 atcgcaaaaa atatatcatc gattcgcttg aaattaattt attcacgtcc gcactattcc
     8641 aagattctgg tactgttaaa agtgaaggaa acacatacac agatggttca agtgtcattg
     8701 aaatggatac agataataaa gtattagagt atgtaaatcc atcacaagaa cgtactaatc
     8761 cagaagatct cagtagtgtc aaacgagctg gacttattca agatagtttt aactttgtga
     8821 acgaccatgc tggttggact ggcgacggcg cttactattt cacaggttat gccgcggaaa
     8881 gtgcgacgac taatttcagt ttattcatcg ataatttaca agtatacaat gagaatggca
     8941 tggcggatat ttctgtaaca gaaggacttg aagctgttta taaatacatg agaccatttt
     9001 tccgcttaga tacagatgtt cccggagaga aaaaagaagt tacgttacca tcctcttatt
     9061 ctgtctatag tgctcttgcc caaaatccta acgtcaaagc agaagaaatt gaagatattg
     9121 ttcctggcta tcatatgact agaagcgaat cttcgggcat gaatcgtctt gtaacattag
     9181 agccgacgtg gttgtataag tatcatgaca aatggttcat cttccaacca gacgcagaaa
     9241 aggcgggtga ataaaaatgg attggcgtaa aacacaaatg atttttattg tgactctcct
     9301 cattcttaat gtttttttag cggtaatatt tttcaacaag cagttatcag atgacccaga
     9361 tacactcgga aatgaaacgc tagaagaacg attaaaagca gataatatct ctcatcctga
     9421 tttatcgacc aaacctacta gcggctctat tttcactaca gagcgagcag cttttacaac
     9481 aaaagatgtg agcgatctta cagggcaagc cattacgctt aaagataaca ataaacaaat
     9541 ctattctgtc ttacaaactc ccgtaaaagc tggcaaaaaa ggtagtaacc cagaatttca
     9601 aaaatttatg gaatcagatg tttatcgcgg ggaatcctat caattttgga attatgacaa
     9661 agatgctcgg accctcactt ttaatcaatt aattaataat aatatggttt tatttgatga
     9721 agcgggccaa attacttttt atttagatca agatgaccga gtgatctcat acgagcaaac
     9781 ttggatgtcc aagcaagatg atttaaaaga taaaaccaat ttaatgtccg caacagatgc
     9841 attagaagcg gtttatcagc acggagaatt gaagcaagac agcgacgtgg tttctgcaac
     9901 atttggctat tacacgacag tacagctacc ctctggaaat gtatacttcc ccgtttggtg
     9961 ttttgaagta aaacattctg gtgaaactaa ttatgtcctc gtaaatgcca aagacgaaca
    10021 agtaattaat caatcagaca acaaatcaac caccgagcca ggtacagaat tatcgagccg
    10081 tcagaaaacc aaataaaaaa tgagtcaacc taattatcat gaaaaattag gttggctttt
    10141 tcaaacgata gggcatgcaa ttttgccgaa ttagcgttac aatgaaagat atataagcct
    10201 ttagggggat aaaaaatgtt cgcaaataaa attttaacgg aaaaagatac ggatcaaatc
    10261 cgatttagta tattagccag tggaagctca gggaatgcca cacttgtcga aacaggagac
    10321 caaaaaattc tgatcgattg tggtttgagt ggaaagaaaa tggaaggatt attcgcgcaa
    10381 gttggtcgtg atatgaacga tttagacgcg attctaatta ctcatgaaca ttcagatcat
    10441 attaaaggtc ttggtgtgct tgctcggaaa tacaaactcc ctatttatgc taacgcgaaa
    10501 acgtggaaag caatggataa tatgattggc gaagtgtctt cagatcaaaa attccaattt
    10561 gatatggaaa cagtaaaaac ctttggtagc atgcaagtgg aatcctttgg agtctctcat
    10621 gatgcaattg agccgatgtt ttacatattt cataaaggga ataaaaaatt tgtaatgata
    10681 acggacactg gttatgtaag cgaccgaatg aaaggtcata ttgcgggggc tgatgcttat
    10741 ctttttgaaa gtaatcatga tgtagaaatg cttcgaatgg gacgctatcc gtggaatgta
    10801 aaacgcagaa ttcttggtga cgagggacac gtgagcaatg aggacgctgc aatagcaatg
    10861 agcgaagtca ttaccgatca aacaaaacga atttatttag gacaccttag taaagacaac
    10921 aatatgaaag aacttgcgag aatgagcgta acacaaacac ttatggcaga aggtattgat
    10981 gttgggggta aactagaaat ttttgacaca gaccctgata atgctacatc tatctttact
    11041 atttaagttt caccgttttt ttaaagcttt ttcatcgttt tttcatattt ggggtttatt
    11101 atggaagtat ataaatgcga aatttgcaga gaggaaggaa gacatggacg agaaagaaaa
    11161 gaatttaaat gaaaacagcg agaatgaaag cacgccaaaa agagaggtcg aggatacttt
    11221 acatacaccg gagagcgcgc aaccagtcca agaaactcct attgtagaag gcgtgacccc
    11281 agaaggggag aaatttgccg gagcgacaga agatgcagcc gaggcgagtt ctacaaatgc
    11341 attttttgaa gaagcaagta ataaagaacc agaacctgct agaccggctc cagggccaag
    11401 acgcgctggt acaactggtg gcggggcagt tccacctaat agagtgaata atggcggaag
    11461 tggtaacggg aatggtgaac caccgaaacg cggcaaacac tttatcggtt actttttaac
    11521 agcacttatt ggtgttatta tcggaggact tattattttc tttgtcgctt gggataatgg
    11581 tgacaatgca gatacaactt caaactcaaa taataaagct accaaagtag aaaaagtttc
    11641 agtagataca acatcagatg taacaaaagc agtagacaaa gtacaagatg cggtagtgag
    11701 tgttctaaat taccaatcat cttcatccct tgatggaaca acgacttctg aacaagaagc
    11761 ttcctcagga tctggtgtta tttataaaaa ggcaaatgga aaagcctaca tcgtaacaaa
    11821 taatcacgtt gttgctgatg caaataaatt agaagtaact tttacaaacg gtaaaaaatc
    11881 cgaagcaaaa ttactaggga cagacgaatg gaacgattta gctgttcttg aaattgatga
    11941 taaaaatgtt actacagtcg ctgcattcgg cgattcagat tcattaaaac ttggtgaacc
    12001 agcaattgca attggtagcc cactaggaac agaattttcc ggttctgtaa cacaaggtat
    12061 tatttctggt ctaaaccgtg cagtaccagt tgatacaaat ggcgacggaa cagaagactg
    12121 ggaagcagat gttatccaaa cagatgcagc aattaaccct ggtaacagtg gtggagcttt
    12181 aattaatatt gaaggccaag taattggtat taactcaatg aaaatttcga tggaaaatgt
    12241 agaaggtatt agctttgcaa ttccaagtaa cacagtagaa ccaatcatcg aacaactaga
    12301 aacaaaaggc gaagtagaac gtccatctct aggcgtatcc ttacgtgatg ttgatacaat
    12361 tccagaaaca caacaaaaaa atatcttgaa attacctgat agcgtagatt acggcgcaat
    12421 ggtacaacaa gtagtatccg gttctgcagc agacaaagca ggcttgaaac aatacgatgt
    12481 tattgttgaa ctaaacggcc aaaaagtaac aaactccatg acattacgca aaattctata
    12541 cggtaacgac gtgaaaattg gcgataaagt caaagtgaaa tactatcgtg acggtaaaga
    12601 aaaatccaca gatattaaat tagaagcagc aaaaacaact acatgataac aaaaagccat
    12661 tctcttgaaa aagagggtgg ctttttttct gtggaaaact tgtggatagc gatttttttc
    12721 ggatatagat atggtagaga acaagaattc tcctactaaa tatagaactg gtttgtggat
    12781 atgtggataa cttctgtgga taacctgtgt gtaagcagtg aatatcttgt ggaaaagaac
    12841 aattttgata atttaatcaa taaacacaga tttatttttg aaaaaaacac attttttgcg
    12901 aaaatatagg tcaaaaaaga aaaatgtgga tagaaagcca tttatccaca tttttacttt
    12961 ttataagctg gatatgtgac aaggaaaata actttacata gagatttgat tcgcgagatt
    13021 gattgtagga gaaggggttc cgctgtttgg tggagtttga gttttgaata gttaggcgac
    13081 gattttacct gtggataagc tgtggatagt gaaatttggc tatcatatat attgtggaga
    13141 atatacgttc ggacacaaaa tagagaaggg gcttgtggat atgtggataa tttttgggga
    13201 taacttgtgt ataagggcgg gataacctgt ggaataactt tttatggaaa gctgctctta
    13261 ttttattttg actagtgcaa tgagggattt ttgatgtatg ataaaagtat taaaaaagat
    13321 aagggtggca taaatgaata ttcaaattgt aacggtcggg aaattaaaag aaaaatattt
    13381 agtgcaagga atcgccgaat atttaaaacg acttagcgcc tatgcgaaag tgacgatcgt
    13441 ggaagttccg gatgagaaag ctccggaagt gctgagtgat gccgaaatga agcaagtaaa
    13501 agataaagag ggtgcgcgga ttttagcaaa gattccggac gatgcccatg tgattgcgct
    13561 ggcgattgat gggaaaatga agtcgagtga agaatttgcg gcggatttgg ataagctggc
    13621 gacttatggt aagagtaagg tgacgtttgt gattggtgga tcgctgggac ttagtgaggc
    13681 ggtgttgaag cggagtaatg agcggatttc gtttgggagg ttaacgctgc cacaccagtt
    13741 gatgagattg gtgctggtgg agcaggttta ccgggcgttt cgaattgttc ggggggagcc
    13801 ttatcataaa tagctagctg gttgaaaggg ttgtaatcaa caacttaact tttgaatgct
    13861 ggtttacttt tttcgataag ccatttttca ccatttgaaa ttgtatgatc tgcatgataa
    13921 attaatgttt ttcgaagtga tgcgtattct gtgggtaatg tttcatagtt tagaaaatga
    13981 tagtttagtg cgatgctttc ggggataatt ccaataccaa gttcattatt gcagatttca
    14041 acaagtgttt cgggaatatt gatctctgat atggaaacat ttgggatatt aatatcgtta
    14101 atgagagcag ccagggcgcg gtatgaataa cattgtttgc tgaagacgta taatcgttct
    14161 tccgctaata ttttttggac tgattttcca gctgtgttgc ctgcgaaaac tagtttatcc
    14221 catgagagcg tttgtgagat gatttggcta tcttgaaata aattttcttt ttcgagttca
    14281 gcgacatatg cgatggttag ttctctgtta gctatttttg gtattaattc acttgtactt
    14341 ccgctaacga tagataattt tttatttgga aactgttgat agaactcttt aatgattgtg
    14401 ttaaattcca taggcaaaga agattgcgta ataccgattg agatagtttc ttcttcatta
    14461 ttgataatat caatcgtttc ctcccataat aaaatcattt ttttgaattg ttgatagatt
    14521 ttttcgccct ctttagttgg ttccacacca ttcgagtgcc ggaagaaaag ttgagtttgg
    14581 aactgttttt cgatattttt tattttattg gacatattag actgtaaatg atgcagttca
    14641 ttcgctgctg cagaaatact ctttagttca gctactttat taaatgcttt catgttttca
    14701 atatccataa ttttctcctt ttggtatcaa aaataatgat accggcatat gattttcgca
    14761 tttcaaatga tagcgcagat agattatact ttatttacaa tataaattca atttgggggt
    14821 tatgttatga atacaaccat tcaacaattg gttaaacatg tttcagtaag agaatttaaa
    14881 aatgaaagat tatcagatga aatcaaacaa catttattaa cagctgcgag aagtgcatct
    14941 agttcgcatt ttgtgcaatc tttttctatt ttagaaatca cagatgaaaa actaagaaag
    15001 gaactagctg aaattacaaa tagtgcttct tatgtaaatc aaacggggac cttttatgtg
    15061 tttgtagggg atttataccg acaatcaaaa cttttactgg agaataatag aactttagat
    15121 gggttgagaa atatggaatc attactcgtc tctgtgatag atgctacaat tgcagctcaa
    15181 aatatggtta ttgctgctga gtctcttgat ttaggaatct gttatatcgg tggaataaga
    15241 aatgatattg aaaaagtagc tgaattgcta aacttaccac catttacgat acctgttttc
    15301 ggattaactg taggcgttcc agaatataaa aatcaagtaa aaccacggct attactagaa
    15361 aatcaagtag gagaaaatca atatccacat gaacaattta cggatttaaa agcgtatgag
    15421 gaattgacca aagattatta tgctttacgt gaaaaaaatc agcatcaaac ttcatgggga
    15481 gacaagaatg tagcgttttt tgaagaaata cgaagaccag aaatagctgg ctttttgaaa
    15541 aaacaagggt ttacattgga ttaattaatt ttcgttgtag ggcgtataaa aaataatagt
    15601 attaaattta tgagaggctg gaagagtatt ttttccggct ttttatttga ttggggctat
    15661 tattttgtca tagaaagctt aaactagatt
//
LOCUS       DABQVC010000051        15568 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.051,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000051 DABQVC010000000
VERSION     DABQVC010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15568
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.051"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            32..559
                     /locus_tag="IBJ56_001140"
     CDS             32..559
                     /locus_tag="IBJ56_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HAM3417399.1"
                     /translation="MKTFTRILVLLAGIAMIILGVWFLFHPGISLLTSTLMFGFLLLI
                     SGIFHTISYFSDRKSQNVSGWVLADGILSILLGFLLLFNEFDGTLTLVLLFGMWVLFA
                     GIMRTIGAFTAKQNNVQGWGWILTIGIIGIIVGFIALFNPVVSAIGIVLVVAIFFIVQ
                     GIGAIATFFFIGKNS"
     gene            complement(648..1349)
                     /locus_tag="IBJ56_001141"
     CDS             complement(648..1349)
                     /locus_tag="IBJ56_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3417400.1"
                     /translation="MSLLNEENSFYNVDLLNLLKDSSEAVLPYKRIRFRRNQQILAEG
                     AETDYFYIIEDGVVSMSKNTCKEDSIINFLGKQECIGPLTLLGGAKSPVNYTTISEVS
                     VYQFERKYVLNKFLSSPDVFWQMNALMQSMVTPMLEREGYVNLPSSEKVLAGLIACGE
                     RFGRIESDGSCLIPYYFTQKILGNYLNLARAYVATNLRKLEEDGIIALSPKPWRVNNF
                     EIHKQKLKENHEPYI"
     gene            complement(1425..1973)
                     /locus_tag="IBJ56_001142"
     CDS             complement(1425..1973)
                     /locus_tag="IBJ56_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HAM3417401.1"
                     /translation="MRDQKLKFLVVDALFAVIIALLAQVAIPLGPIPLTGQTFAIGLA
                     ATILGARHGTISVLVYIVLGAVGIPVFQGMTAGIGILFGPTGGFIVGFIFNALLTGWL
                     LEKTKFTVPYAIVANILGAIVTLIFGVLWLKVSTGLDWPTAFLTGMVPFIIPGIIKAV
                     FAALLGILIRDRLIKAKLLRAS"
     gene            2167..2499
                     /locus_tag="IBJ56_001143"
     CDS             2167..2499
                     /locus_tag="IBJ56_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HAM3417402.1"
                     /translation="MEVNPQFKKGVLELCCLFLIQKKDCYGYELANQVSKYIEVAEGA
                     IYPVLRRLVKEEYCSTYLVESNEGPSRKYYQLTVKGEIYLNELISEWNNFTDSVAKLL
                     TEGDAVNE"
     gene            2492..3082
                     /locus_tag="IBJ56_001144"
     CDS             2492..3082
                     /locus_tag="IBJ56_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HAM3417403.1"
                     /translation="MNKQDFLNELNQRLELLDPKERRELLSDYQEHFRNGIEAGKSEE
                     QIVFDLGSPEEIAADIISERGIREEPAEMDYYYVPRKNQNENRSVSKQILIGVGLFFL
                     DICLIIPIMVSLWSLVISLWATVGGFLLSPVILGVGIIFGADFEFYQMFVSIGLVGLG
                     LMLLFVANALTQLTSKVTMAIIQWHKYAVKGGGKNA"
     gene            3075..4175
                     /locus_tag="IBJ56_001145"
     CDS             3075..4175
                     /locus_tag="IBJ56_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 domain-containing protein"
                     /protein_id="HAM3417404.1"
                     /translation="MRKHHLSKKLFFAGLVLFIIGAIGVALTMNKGNMIEKGEPLTKQ
                     WDLSAESINSIAFSSERDVTFEWKESTNGKNYIELKGNYSANDKKAIQKLDPVSEDGT
                     SFNITVPEEEDWYNGFGKIYAYGQQKVTVYLTKDTKLADLEVKSHSGDINVADFKVKK
                     FVSSTNSGELKVSNLEANTAQMATSSGDLELSNMKANSSVETGSGQTDLTNLTGDLEV
                     NGGSGDVNVTGVKAKKLKIAIDSGDIELTSGTVTDLAVLTTSSGDIDASTKGKVQAES
                     NSGAIELAGITNDVTAKTSSGDIDVAFIKQVKNIEINTDSGEVELDLPGDFKAIYEAS
                     SNSGSVKAPTSDSNTDNRVTVKTSSGDIKIEK"
     gene            4281..4781
                     /locus_tag="IBJ56_001146"
     CDS             4281..4781
                     /locus_tag="IBJ56_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3417405.1"
                     /translation="MNFHIRKATNSDAEAIQHVAITSWHHTYQDLIPGDVQDDFLERF
                     YNVETLHNRISATPFAVVEQADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTEL
                     LEVGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNH
                     HAFEEE"
     gene            complement(4829..5215)
                     /locus_tag="IBJ56_001147"
     CDS             complement(4829..5215)
                     /locus_tag="IBJ56_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417406.1"
                     /translation="MRFIIAYLSIFVLGIFSTLLVETILYDNVTPQLVFSAILFAAPV
                     ILVASTLGEIFYGFSKKASYFTFAIWGFAYGVVAAVIILSIIQVSGMLISVGVSILAG
                     VIMALLAIIFFFLRGGKSTSGKAATK"
     gene            complement(5268..5612)
                     /locus_tag="IBJ56_001148"
     CDS             complement(5268..5612)
                     /locus_tag="IBJ56_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HAM3417407.1"
                     /translation="MLDKKIISALSYFSLFFAPVITPAIIWCTTKDKEIRHHVRWALL
                     TQTTFVAGVVVMILLYNNVPFSTNSADTINFLALATVFFIVFLNVSILIFNLIRGITR
                     IVKHSDDNWARC"
     gene            complement(5761..7101)
                     /locus_tag="IBJ56_001149"
     CDS             complement(5761..7101)
                     /locus_tag="IBJ56_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HAM3417408.1"
                     /translation="MSSVHKVASISLFTLAWPIFLEQFLRLMISYIDVFMLGHYSDDA
                     VAATGVANQILVISIIIYGFISVGVQIIVAQMIGAKKHKEIENVITNGLVVAFLIGIV
                     MSIIFIFMSKNFLTWMGIDPHLVQVGAPFLEIIGGSSVVIAIHASILPILRAHGYVRQ
                     SILVPVTISIINVVGNYLFLYGPLAYLDYGVAGVGISTAVANFVGMGLAIWMLRKYIG
                     YTFHFKKLEQVSKKLLYSILRLGLPSAGENLSYAGSQLVVTAIIAILGTEALTTKVYA
                     STVSQFVALFAIALGQASQIIIGRAVGAKEIDKAYKQGLRSWKIGLVVAIVVSVSIYL
                     FAEPIMSLFTTNTEIIAMTKELFLLSIFLELGRATNIIIISSLNSTGDVRFPFICGLI
                     VMWIVSLPFSYVLGISAGLGLVGVWLAYIIDEGVRAVLMYRRWRSKVWSLKSVI"
     gene            7267..7728
                     /locus_tag="IBJ56_001150"
     CDS             7267..7728
                     /locus_tag="IBJ56_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAM3417409.1"
                     /translation="MSSKNQDLGHSVIKAFMNFKHAEIKSFQIPGYSKSETRFIFILS
                     RGLKSRGPKIRVSDLGHMLRISKPSVTQMIQSLEGKGLIKRVQNPEDKRSMYVELTEV
                     GAGVSEKMLDEFQASFEDMQEFLGEDDMKKLITLLEKLTDYLNTKSENKEA"
     gene            7736..9460
                     /locus_tag="IBJ56_001151"
     CDS             7736..9460
                     /locus_tag="IBJ56_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003735787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417410.1"
                     /translation="MMKLMKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGV
                     VTGDTDYIWSTGMQMLLISFASVILSVIVVYLASRISMGFGKDLRDKIFTKVEDFSLQ
                     EFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFV
                     VVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKF
                     EEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFI
                     QYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSAPPAKLSFE
                     HVTFRYEGAEKPVIEDITFEANAGETVAIIGSTGAGKSTLINMIPRFYDVESGVVKIN
                     GIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWAALRTAQAENF
                     VSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLR
                     EALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGIGTHEELKETNQIYQEIMRS
                     QLSEEEIA"
     gene            9457..11274
                     /locus_tag="IBJ56_001152"
     CDS             9457..11274
                     /locus_tag="IBJ56_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417411.1"
                     /translation="MSGPGPGGGMRMQTTAKPKNFKQTLFRLLGYMKPRSVAIIVVFI
                     FAILSTIFNIFSPKELGKATTEIFKGVLSPAGIDNDKIFNILMIVLVLYLGSSLFSFI
                     QQYVMSSVAQRTVYDMRKDLKAKMARLPLKYYDTRSNGDILSRSVNDMDNIANTLQQS
                     LTQAITAIVQMIGVLIMMLTISWQMTLIVLVTVPISIILVAIIAGRSQRYFGAQQRNL
                     GILNDTVEETYGGQTIIKAFGQEKKTLVKFDEVNEDYFKAAKKAQFISGIMMPVMQFV
                     GNLGYVGVCVAGGIFVTNGTLQVGDIQSFTQYVQLFTQPISSVANIANIIQSTIASAE
                     RVFEMMDEEEEKDEIPANVNQVAGEEHSIVFDHVKFGYTPDKPLMTDLNIHVEEGQMV
                     AIVGPTGAGKTTIINLLMRFYDVDGGQIRMKGIDTRDMTKDAVREKFGMVLQDTWLFN
                     GTIADNIAYGREGATKEEVIGAAKAAYADDFIRRLPNGYDTVLNEEGSNISQGQKQLL
                     TIARAILSDPSILILDEATSSVDTRTELNIQLAMGNLMEGRTSFVIAHRLSTIRDADL
                     ILVMNHGSVIEQGTHQELLDAKGFYADLYNSQFTGAQAV"
     gene            11391..11690
                     /locus_tag="IBJ56_001153"
     CDS             11391..11690
                     /locus_tag="IBJ56_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HAM3417412.1"
                     /translation="MYQSITANDLEQDLKKASHNILDVRDADAFVEGHIPDAINIPIN
                     ELPEKLASLDKEKPYTIICYAGGRSERASQFLAAEGFDVTNVMGGMGAFHGIVTK"
     gene            complement(11733..13502)
                     /locus_tag="IBJ56_001154"
     CDS             complement(11733..13502)
                     /locus_tag="IBJ56_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HAM3417413.1"
                     /translation="MRKMGVKIGLCVLLMMPFTISFSANVSAEEEISVKAAQDVVNIP
                     DPVLKSYLNGLLGQSSTSDITEAQMDTITNVTISNSSLTDLTGLDYAHNLTILHLSNT
                     GVTDYALVAKIPSLTNLSIAGDNLTNDSLPDLNNLSNITNLNLSPGKLDNNALTKFNK
                     MSKLSYLNLDSNPSITNIMPLKSIPNLATLFVQFCGINDFRGIDTFPKLVSLSAYGQN
                     VGRTVLINSSIKSSALNFDEANQTIFVPFTLMTERGVNFDGYLFPFTTNTSSASTYFT
                     LNETKIDGSRLTIDDKGITVSGITKSYFDTITKMEYNALYNNPAGSYQTPPNFNNYSV
                     SGGSYDHYFDIDHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDDGTPVTSDFNTVV
                     DFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDSTKTDQQFLQ
                     DISAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGLNADPVIVLVNVVEGNEPP
                     TPPAPGPDPTPDPTPNPNNPNINPNPDNGQSANSENASNPSNSEVNAALPNTGDASQA
                     TTVLIGIIIAGVAILFFRQRKHS"
     gene            complement(13663..14289)
                     /locus_tag="IBJ56_001155"
     CDS             complement(13663..14289)
                     /locus_tag="IBJ56_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase 1"
                     /protein_id="HAM3417414.1"
                     /translation="MTNVLFIKANGLPAERSVSVALYEIFLTEYKKSHPDDNVTELDL
                     FEADLPYYDVTMMSGLHKEAAGETLSPEEKRLADIANSYLDQFLAADKIVMAFPLWNF
                     SIPAQFLTYLFYLNQAGKTFKYTANGPVGLVADKKIALLNARGGIYSDGPMQSFEMSL
                     SYVKNVLAHFGISEPEMVIVEGHNAKPDQAKDIISAGAKEAVELAKIF"
     gene            14458..14907
                     /locus_tag="IBJ56_001156"
     CDS             14458..14907
                     /locus_tag="IBJ56_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAM3417415.1"
                     /translation="MGVKTLKPCTEQSELLYRMHLLSKEISHVFEQQTNMSFTKVEIL
                     FHIQQTPGQSQNRLREKLYIDSASITRHLKRMEAQGLIVRKKQDENKRYTYLFLTSAG
                     EAELATLLLEKEKFQNGALEAFSEEEVSALLKSVTKMMNNVEKMEEK"
     gene            14910..>15568
                     /locus_tag="IBJ56_001157"
     CDS             14910..>15568
                     /locus_tag="IBJ56_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HAM3417416.1"
                     /translation="MKAVVIENYGGKEELKEKEVAMPKAGKNQVIVKEAATSINPIDW
                     KLREGYLKQMMDWEFPIILGWDVAGVISEVGEGVTDWKVGDEVFARPETTRFGTYAEY
                     TAVDDHLLAPLPEGISFDEAASIPLAGLTAWQALFDHAKLQKGEKVLIHAGAGGVGTL
                     AIQLAKHAGAEVITTASAKNHELLKSLGADQVIDYKEVNFKDVLSDIDVVFDTMGGQI
                     ET"
BASE COUNT         5102 a         2705 c         3140 g         4621 t
ORIGIN      
        1 tagaaaaaac aaaggggagt tgaaataaaa aatgaagact tttacacgaa ttcttgtttt
       61 attagcgggg attgcaatga ttatactagg ggtttggttc ttattccatc caggaatttc
      121 attattaacc tcgacattaa tgtttggttt cttattactg atttctggta ttttccacac
      181 aatctcttac ttttcagaca gaaaatcaca aaatgtttct ggctgggtac tagctgacgg
      241 gattttatcc atcttactag gtttcttgct attatttaat gaatttgacg gaactttaac
      301 actcgtatta cttttcggta tgtgggtatt atttgctggt attatgcgta caattggcgc
      361 attcactgcc aaacaaaaca acgtacaagg ctggggctgg attttaacaa tcggtattat
      421 cggcattatt gttggtttta tcgctctatt caatccagtt gtttccgcaa ttggtatcgt
      481 ccttgtcgtt gcgattttct tcatcgttca aggtatcggc gcaatcgcaa catttttctt
      541 tattggtaaa aatagttaat aaaaaagaag ctatcttagt ttgatagctt ctttttatta
      601 tgcatatttt tacgaaatac aattagaaaa aagtattcat tttgcactca tatgtaaggt
      661 tcgtgatttt cttttagttt ttgcttatga atctcgaaat tattaacacg ccaaggtttt
      721 ggcgaaagcg caataatgcc atcttcttcg agctttcgca ggttagttgc aacgtaagct
      781 cgagctaaat ttagataatt tcccaagatt ttttgggtga aataataggg aatcaaacaa
      841 gaaccatccg actcgattct tccaaatctc tccccacaag caattaatcc cgctaaaact
      901 ttctcgctag aagggagatt aacgtaacct tcccgttcta acataggtgt aaccatactt
      961 tgcataagtg cattcatctg ccaaaaaaca tctggtgaac ttaagaattt attaagaaca
     1021 tatttacgtt caaattgata aacactcact tcacttatcg ttgtgtaatt tactggtgat
     1081 tttgcaccac caagaagtgt aagcggcccg atacattctt gtttacctaa gaagttaata
     1141 atgctatctt ctttacaagt atttttactc atagaaacga caccatcttc aatgatgtag
     1201 aaataatcag tttccgcacc ttcagctaaa atctgttggt tgcgcctaaa gcgaattctt
     1261 ttatatggaa gaactgcttc actagaatct tttaataaat tgagtaaatc tacgttgtaa
     1321 aagctatttt cctcattcag taatgacata taccgagtcc ccttttctca gtgttaatca
     1381 ttatcattat ataggagaag actcaaaatg tgtattaatg ggacttagga tgctcgaagt
     1441 aatttggctt taatcaaacg atcacgaatg agaatcccta ataacgccgc aaaaaccgct
     1501 ttgataatgc ctggaataat gaaaggtacc atgcctgtta aaaaggcggt cggccagtca
     1561 agtccagtgc taactttaag ccataaaacc ccgaaaatta acgtaacgat ggctcctaaa
     1621 atattagcaa cgattgcata aggaacagtg aattttgttt tttcgagcaa ccaacctgta
     1681 agtagtgcat taaaaataaa tccgacaata aatccgccag ttggcccaaa aagaatccca
     1741 attcctgctg tcataccttg gaaaacagga atacccacag cgccaagaac aatgtaaact
     1801 aaaacagata ttgtaccatg acgagctcca agaatggttg cagctaaccc aatggcaaac
     1861 gtctgcccag taagggggat tggaccaagt gggatagcaa cttgtgcaag taaagcaatg
     1921 atgactgcga ataaagcatc tacgactaaa aatttcaatt tctgatcacg cataaacata
     1981 tctctcctta atgtaaactt tttactaaaa taggttaaca tttatttcct gaaaaaacaa
     2041 tactattttt tctaaccagt accttgcaat gaacactagt gtatgttaaa ctatagtggt
     2101 agtgaacaat atatagtagt gaatacttgt tactagtgtg caatataaca gaatggagga
     2161 gttagcatgg aggttaaccc acagttcaaa aaaggtgtgt tagaactttg ctgtttattt
     2221 ttaattcaaa agaaagattg ttacggttat gaattagcaa atcaagtgtc taaatatatt
     2281 gaagtagctg aaggtgctat ttatccagta cttagaagat tagtaaaaga agaatattgt
     2341 tctacctatt tagtagaatc aaatgaaggt ccatcaagaa aatattatca gttgacagta
     2401 aaaggagaaa tttacttgaa tgaacttatt tctgaatgga ataattttac agacagtgtg
     2461 gcaaagctat taacagaggg ggatgcagta aatgaataaa caagattttc tcaatgaatt
     2521 aaaccaacga ctggaattgc ttgatccgaa agaacggaga gagttactat cggactatca
     2581 ggagcatttt agaaatggga ttgaagcagg gaaaagcgag gagcaaatcg tttttgacct
     2641 tgggagccca gaagaaattg ctgcggatat aatcagcgaa cgtggtattc gtgaagaacc
     2701 ggcagaaatg gattattatt atgtcccgcg aaaaaatcaa aatgaaaata gatctgtgag
     2761 taaacaaatt ttaataggtg tcggattatt tttcttagat atttgtctta tcattccaat
     2821 tatggtttcg ctatggtcct tggttatctc actttgggcg acggttggtg ggttcctttt
     2881 atcaccagtt atacttggcg taggaattat ttttggtgct gatttcgaat tttatcaaat
     2941 gtttgtttct attggccttg taggtttggg gctaatgctt ttatttgtag caaacgcgct
     3001 aactcagctt acaagtaaag taacaatggc gattatccag tggcataaat atgcggtaaa
     3061 gggaggcgga aaaaatgcgt aaacatcact taagtaaaaa attatttttc gctggtttgg
     3121 tactatttat tatcggtgct atcggtgtag cattaacgat gaacaaaggt aatatgatag
     3181 aaaaaggtga accacttaca aaacagtggg acttatcagc tgaaagtatt aactccattg
     3241 ctttttcttc cgagcgcgac gtaacgtttg aatggaaaga aagtacaaat ggaaaaaatt
     3301 acatcgaact aaaaggtaat tactctgcta atgataaaaa agccattcaa aaattagatc
     3361 cagtttcgga agatggaacg tcctttaata ttacagttcc tgaagaagag gattggtata
     3421 acggctttgg caaaatatac gcatacggtc aacaaaaagt aaccgtttat ttaacaaaag
     3481 atactaaatt agctgattta gaagtgaaat ctcattctgg ggatatcaat gtagctgatt
     3541 ttaaagtaaa gaaatttgtt agttctacca actcaggtga gttaaaagta agtaatttgg
     3601 aagcaaatac tgctcaaatg gctacttctt ctggggactt ggaattatcg aatatgaaag
     3661 caaatagctc agttgaaact ggttctggac agacggacct tactaattta acaggtgatt
     3721 tagaagtaaa tggtggttca ggcgatgtga atgttacagg tgttaaagcg aagaaactta
     3781 aaattgccat cgattcagga gacattgagt tgactagtgg cactgtaact gacctagctg
     3841 tgttaacaac aagttccgga gacattgatg caagtacaaa aggtaaagta caagcggaat
     3901 ccaactcagg agcaatcgaa cttgcaggca taacgaatga tgtaacagca aaaacaagct
     3961 caggtgatat cgatgtagct tttatcaaac aagtaaaaaa catcgaaatc aatacagatt
     4021 ctggtgaagt tgaacttgat ctaccgggtg attttaaagc tatttatgaa gcaagtagta
     4081 attcaggtag cgttaaagca ccaacgagtg attcaaatac cgataaccga gtaacggtga
     4141 aaacaagttc cggagatatt aaaatcgaaa aataaaaaat cagtgcgcta attatttaat
     4201 tagcgcattc tttttgttaa aaaggggtaa agtcagataa actgtttcat caatttgcgc
     4261 aagtgaaagg ggaatggatg atgaattttc atattaggaa agcaactaat tcggatgctg
     4321 aagccattca gcatgtagcg attacttcgt ggcatcatac ctatcaagat ttaattccag
     4381 gcgatgtaca agacgatttt ttggaaaggt tttataacgt tgagacgctt cataatcgta
     4441 tttcagcgac tccttttgct gttgtggaac aagcagacaa agtaatcgga tttgcgaatt
     4501 ttattgaact tgaaaagggg aagagcgaac tcgcagcatt ttatttacta ccagaagtga
     4561 cacaacgcgg acttggtaca gaacttttag aagtaggaat gactctattt cacgtgccat
     4621 taccaatgtt cgttaacgtc gaaaaaggaa acgaaacagc gattcatttt tataaggcga
     4681 aagggtttgt tcaagtggag gaatttaccg aggattttta cggttatccg ctggagacaa
     4741 ttcgttttaa tttgaatcat catgcgtttg aagaagaata aaaaaatgtc tattctagtt
     4801 gaatgaatca attaggatag acattttttt atttcgtagc ggcttttcca ctggtagatt
     4861 ttccaccgcg taaaaagaag aagatgatgg caagtagcgc catgataact cctgcgagaa
     4921 tggatacgcc aacagaaatg agcataccag aaacttggat aatacttaaa atgatgactg
     4981 ctgcaacaac cccgtaagcg aagccccata tagcaaatgt gaagtaacta gcttttttgc
     5041 taaacccgta aaaaatttcg cctaacgtag aagcaactaa aattacagga gctgcaaaaa
     5101 gtatcgctga aaacacaagc tgtggcgtaa cgttgtcata gaggattgtt tcgactaaaa
     5161 gcgtagaaaa aattcctaaa acaaaaatcg ataaataagc aataataaaa cgcatcaaaa
     5221 aaacctccta aagtacacta tattatagca taaattagga agttagctta acatctagcc
     5281 caattatcgt cactatgctt tacgatacgt gtaattcctc gaatcaagtt gaaaatgagt
     5341 atcgatacat ttagaaaaac gataaaaaat acagtagcta aggcaagaaa gttaatggta
     5401 tctgcactat tggtactaaa tggcacattg ttgtaaagta aaatcattac aactacacca
     5461 gcgacaaaag ttgtctgtgt gaggagtgcc catcttacat gatgccgaat ttctttatct
     5521 tttgttgtac accagataat cgcgggagta atgaccgggg caaagaaaag actgaaataa
     5581 ctaagcgcac taataatttt tttatctaac atttctcatc tatcctctca tttgtttata
     5641 agtctagtat agcggggaaa gagaaatgga accatcgaat taggtgacga tatacagagg
     5701 aagatgacag ttttgtcata tacaaaaacg cctcttcgaa aaaatcaaag agacgtttct
     5761 ttatatgact gattttaggg accaaacttt actgcgccat cttcggtaca ttagaacagc
     5821 tcgaacgcct tcatcaataa tataggcgag ccaaacacct acaagcccaa gaccagcaga
     5881 gataccaagt acataggaga acggcaaact aacaatccac ataacgataa gtccgcatat
     5941 aaatggaaaa cgaacatcgc ctgttgagtt aagactgcta ataatgataa tattcgtcgc
     6001 acgtccaagt tctaggaaaa tcgaaagtaa gaacaattct ttcgtcatcg caatgatttc
     6061 ggtattggta gtaaataaac tcataattgg ttccgcgaaa aggtaaatcg aaacgctgac
     6121 cacaattgcg acaaccaaac caatcttcca actacgtaga ccttgcttat aagctttatc
     6181 gatttctttt gcaccaaccg cgcgaccgat aataatttga gaggcctgac cgagcgcgat
     6241 agcaaagagt gcgacaaact ggctaaccgt cgaagcataa acttttgtgg taagcgcctc
     6301 tgtaccaaga atcgcaataa ttgcggtaac aactagttgc gagccggcat acgataaatt
     6361 ttccccagca gagggaaggc caagtcgtaa aatcgaataa agtaattttt tggaaacttg
     6421 ctccagtttt ttgaaatgga aagtatagcc gatatatttt cgcagcatcc agatggctag
     6481 acccattccg acgaagtttg cgacagcagt ggaaatacca acacctgcta ccccgtaatc
     6541 taagtatgca agcgggccgt acaggaataa gtaattaccg acaacattga taatgctaat
     6601 cgtcacagga acaagaatgg attgtcttac gtaaccatgc gcccggagaa taggcaaaat
     6661 cgaagcatga atagcgataa caaccgagct tccaccgata atttctaaaa acggtgcacc
     6721 aacttgaact aaatgaggat caattcccat ccaagtcagg aagtttttcg acataaaaat
     6781 gaaaataata ctcatcacaa ttccaattaa gaaagcgacc actaagccat ttgtaatcac
     6841 attttcaatt tctttatgtt ttttggcacc aatcatttgg gcaacgataa tctgtacgcc
     6901 aacactgata aagccgtaaa taataataga aataacaaga atctgatttg ctacccctgt
     6961 cgcagctacc gcatcatctg aataatgccc caacataaag acatcaatat aactaatcat
     7021 cagacgtaaa aattgctcta gaaaaatcgg ccaagcaagc gtaaaaagac ttatgctggc
     7081 gactttatgt actgaactca cttatttccc tcccttcgca ttaacacaat taaagccatt
     7141 ataaggtaat taaagttaaa agtatagatt aatttcaaaa tcgctccaag atatcgcttg
     7201 acaaaaatcg aatatctcat ataattagtt aggtaaacta atcaaatgat agaaagaagt
     7261 ggagaaatgt cttcgaaaaa tcaagacttg gggcactcag taatcaaggc tttcatgaat
     7321 tttaagcatg ctgaaataaa gagtttccaa attccgggtt acagtaaatc tgaaacaaga
     7381 tttattttta ttttatctcg tgggcttaaa agcagagggc caaaaattcg tgtttccgat
     7441 cttggtcaca tgcttagaat ttcaaaacca agcgtcacgc aaatgattca atctttggaa
     7501 ggaaaaggac tcattaaacg tgttcaaaac ccagaagata agcgctcgat gtatgtggaa
     7561 ttaacagaag tcggagcagg cgtgtcagaa aaaatgctcg atgaatttca agctagtttt
     7621 gaagatatgc aggagttttt aggcgaagac gatatgaaaa aattgattac actcctagaa
     7681 aaactgacag attacttaaa cacaaaatcc gaaaataagg aggcataaac cgcaaatgat
     7741 gaaattgatg aaaagattaa aaccttattg gctgagcatt acggccgtat tagtccttac
     7801 tttcgggcaa gtcattggac agctttattt accgacgctt atgtcgaaca ttatcgacaa
     7861 aggagttgta acaggcgata cagactacat ttggagcact ggaatgcaaa tgttacttat
     7921 atcatttgct tcagttattt tgtcggtcat cgtcgtttat ctcgcatcca gaatttcgat
     7981 gggattcggg aaagatttac gcgataaaat ttttacaaag gtagaggact tttccttaca
     8041 agaatttgat aaagtaggaa cttcctcgct gattacgaga acgacaaatg acgttgttca
     8101 aatccaaaat gtactttata tgatgatgcg gttaatggtg atggcgccaa tcatgctact
     8161 cggcggtatt attatggcag ttggacgaga tgcgaaatta tcgcttattt ttgtcgttgt
     8221 tttaccgcta ctactcctat tagtagttat tcttggcgga aaagcaatgc cgatgtttaa
     8281 atcgcttcaa aagaaaatgg acaaattaaa ccgcgttatt cgtgaagggt taaccgggat
     8341 tcgtgttgtg cgttccttta accgcaatga agatgaactc gaaaaatttg aagaagcaaa
     8401 cgctgactat gctactacgg cgattaaagt taaccgactg ctatctctta tgagtccatt
     8461 aatgatgcta ctgatgaact taacttccat tgcgattgtc tggattggtt cgatttttat
     8521 tggcaatggt gatatgcaag taggggactt gatggcgttt attcaatacg cgatgcaaat
     8581 tatgatgtcc ttcatgatgc tttctgctgt atttattatg attccacgtg ccggagcttc
     8641 tgctgagcgt attaatgaag ttttagatat gaatgcagaa atacttaacc ctgaaaatcc
     8701 aaaaacaagt gcaccaccag caaaactttc ttttgaacat gttactttcc gctatgaagg
     8761 cgctgaaaaa ccagtaattg aagatattac ttttgaagct aatgctgggg aaacagttgc
     8821 aatcatcgga agtactggtg ctggtaagtc tactttgatt aatatgattc cacgttttta
     8881 tgatgtcgaa agtggtgttg taaaaattaa tggaattgac gtgcgtgaaa tggatcaatc
     8941 cagtttgcgc caaaaaattg gtcttgtgcc gcaaaaagcg gttctattca caggaacaat
     9001 tgcttctaat atgcgctacg gaaaagaaga tgcaaccgac gaagaaattt gggcagcact
     9061 tcgaacagct caagcggaaa actttgtatc taaacttgca aatggtttag gaagccgcgt
     9121 agaacaaggc gggaacaact tctctggagg acaaaaacaa cgtctttcca tcgcacgttc
     9181 tttaattaga aaaccagaaa tttatatttt tgatgatagt ttctcggcgc tcgatttcaa
     9241 aacggatgcg aaactgcgtg aggctttgaa agctgaaaca accgaagcgg tgacactcat
     9301 tgtggcacaa cgtattacct ctgttgtcaa ttccgaccaa atcattgtta tgaatgaagg
     9361 taaaattgct ggaattggaa cacatgaaga attgaaagaa acgaatcaaa tttatcaaga
     9421 aattatgagg tcacagctgt cagaggagga aatcgcatga gtggtccagg tccaggtggt
     9481 ggcatgagaa tgcaaacgac cgccaaacca aagaacttta aacaaacact attccggctt
     9541 cttggctata tgaaacctcg ttctgtcgca attatcgtcg tgtttatctt tgcgatttta
     9601 tccacgattt ttaacatttt tagcccgaaa gaactcggga aagcaacaac ggaaattttt
     9661 aaaggtgttt tgagtccggc tgggattgat aacgataaga ttttcaatat attaatgatt
     9721 gttttagtct tataccttgg tagttcctta tttagtttca ttcagcaata cgtcatgtcg
     9781 agtgttgcgc aacgaactgt ttatgatatg cggaaagatt taaaggcgaa aatggctcgc
     9841 ttgccgctga aatattatga tacacgctca aatggtgata ttctaagtcg ttctgttaat
     9901 gatatggata atatcgcgaa cactttgcaa caatcactaa cccaagctat taccgcgatt
     9961 gtccaaatga ttggtgtttt aatcatgatg ctaacaataa gctggcaaat gacattaatc
    10021 gttctagtga cagttccaat cagtattatt ttagtcgcca ttattgctgg tagatcacaa
    10081 cgttacttcg gcgcacaaca acgtaatcta ggtattttaa atgatactgt agaggaaact
    10141 tacggtggcc aaacgattat taaagccttt ggtcaagaaa agaaaacgtt agtaaaattt
    10201 gatgaagtaa atgaagatta tttcaaagca gcgaaaaaag cgcaatttat ttccgggatt
    10261 atgatgccgg tgatgcaatt tgttggtaac ttaggctatg tcggtgtctg tgtggccggt
    10321 ggtatttttg ttactaatgg aacgcttcaa gtgggggata ttcaatcatt tacgcaatat
    10381 gttcaattat ttacgcaacc aatttcaagt gtggcaaata ttgctaacat cattcaatcc
    10441 actattgctt cggcggaacg tgtatttgaa atgatggatg aagaagaaga aaaagacgaa
    10501 attccagcta acgttaatca agttgctggc gaagaacaca gcattgtatt cgaccacgtg
    10561 aaattcggtt acactccgga taaacctcta atgactgact taaatattca tgtggaagaa
    10621 ggccagatgg tagcaattgt tggtccgact ggtgctggta aaacgaccat tatcaacttg
    10681 ctgatgcgtt tctatgacgt agatggtggg cagatccgga tgaaaggtat tgatacacgc
    10741 gatatgacca aagatgctgt ccgcgaaaaa ttcggaatgg tactgcaaga tacttggtta
    10801 tttaacggaa ccattgccga caatatcgca tacggtcgtg aaggcgcaac gaaagaggaa
    10861 gttatcggag cagcaaaagc agcttatgca gatgatttca ttcgcagact tccaaatggt
    10921 tatgataccg tcttgaatga agaaggttct aacatttcgc aaggtcaaaa acaattacta
    10981 acgattgccc gtgcgatttt atctgatcca tctatcttga ttttagatga agcgacttct
    11041 agcgtagata ctcgtacaga attaaacatt caacttgcga tgggtaattt gatggaaggg
    11101 cgcacaagct ttgtgattgc gcatagactt tcaaccattc gtgatgcaga cttaattctc
    11161 gtgatgaatc acggtagtgt aatcgaacaa ggtacgcacc aagaactact ggacgcaaaa
    11221 ggcttctacg ctgaccttta caacagtcag ttcacaggag ctcaagccgt ttaaatgtaa
    11281 gaagacaatg tggctcaccc gccgcattgt ctttttttga gcaaaaaatt tgtttgatgg
    11341 tggattaggc gttatggtta ataaagaaga aattgaagag gtgaaaatag atgtatcaat
    11401 ccattactgc aaatgattta gaacaagact taaaaaaagc gtcacataat atcttagatg
    11461 tcagagatgc agatgctttt gttgaaggac acattccgga cgcaataaat attccaatta
    11521 atgaactacc agaaaaatta gcttctcttg ataaagagaa accttataca attatctgtt
    11581 atgctggagg tcgttctgag cgcgcgagtc aatttttagc tgcagaaggc tttgacgtaa
    11641 cgaatgtaat gggaggtatg ggagcctttc acggtatagt aactaaataa aaaaagaagt
    11701 cgcgactaaa attctagtca cgactttttt atttagctat gttttctttg acggaagaag
    11761 aggatagcta ctccggcaat gataatccca attaacacag tagttgcttg actcgcgtcg
    11821 ccagtgtttg gtaaagcggc atttacttct gagttagacg gatttgatgc gttttcagag
    11881 ttcgcagatt gtccattatc tgggttggga ttgatatttg gattattagg atttggcgta
    11941 ggatctggtg tgggatcagg gccgggagca ggtggtgtcg gaggttcatt tccctctacc
    12001 acatttacta aaacaataac tgggtcagca tttagtccat ctgcacttac cgcatttaaa
    12061 gtcactttat acgttccgac tttggctaaa tcaacaacgc tatcaaaatc actcgttacc
    12121 ttactaccat cacttgtttt tgctgaaata tcttgtaaaa attgctggtc tgtcttggtt
    12181 gaatctttcg tgtaagaaat gctcttatct gctgttatga ctggttttgc aagtatggtc
    12241 accgttactt gtgttggtgt tgcttttaaa ccagcagcat tttcggcatt taatgtcacc
    12301 gtgtagacac cgggtttact aaagtctaca accgtattaa aatcactagt aacaggcgtt
    12361 ccatcatctg tctcagcatg aacatctttt aaaaattgtt cttctgtaac agtggtttgt
    12421 tccccataac ttattgctga atcatttgta atggttagtg aatgatcgat gtcaaaatag
    12481 tggtcgtagc ttccccctga tacggaataa ttattgaaat ttggcggagt ttgatacgat
    12541 ccggcggggt tattgtataa tgcattgtat tccattttag taatcgtatc aaaataactt
    12601 ttggtaattc cacttaccgt aattccttta tcgtcaatgg ttaaacggct accgtcaatt
    12661 ttggtctcat ttaaagtgaa atacgtgcta gcagaacttg tattagttgt aaaagggaac
    12721 aaatagccat caaagtttac tcctcgttca gtcattaaag taaacggcac aaagatagtt
    12781 tggtttgctt catcaaaatt caatgcagag cttttgatag agctgttgat taaaacggtt
    12841 ctacctacgt tttgtccgta agccgataaa ctcactaatt taggaaaagt atcaattcca
    12901 cggaaatcat taattccaca aaactggaca aataaagtag ctaaatttgg aatggatttt
    12961 agtggcatga tgttagtaat agaaggatta ctgtctaaat ttaagtaact taacttggac
    13021 attttattaa atttagttag tgcattattg tcgagcttac caggacttag atttaagttg
    13081 gtgatgtttg ataaattatt caaatcgggt aatgaatcat ttgttaagtt atctccggca
    13141 atgctaagat tagttaggct aggtattttt gcgactaagg cataatctgt tacccctgta
    13201 ttagacaaat gtaaaattgt taaattatgt gcataatcaa gacctgttaa atcagttaaa
    13261 ctactgttac taatagtgac atttgtaata gtatccatct gagcttcagt aatatcactt
    13321 gtgcttgatt gtcctaagag tccatttaaa taacttttca aaactgggtc aggaatgttg
    13381 acaacatctt gagcggcttt tacactaatt tcttcttccg ctgagacatt cgcggaaaat
    13441 gatatagtaa atggcatcat taaaaggacg cacaagccaa ttttgactcc catttttctc
    13501 atgaattttt cctcctttaa taacttttgt tcggtataat cgtatgtatt cttaaaacaa
    13561 ttcctctttt agtaatatgt taaacaaaat agtatcaaaa gtgttgttaa attaaatcga
    13621 aaaaaaaccg tgaaagcgat tttcgctttc acggtttttt tattaaaaga ttttagctaa
    13681 ttctactgct tcttttgctc ctgcagagat aatgtctttt gcttgatcag gttttgcgtt
    13741 atgaccttct acgataacca tttctggctc agagataccg aagtgagcta acacattttt
    13801 tacatagctc agggacattt cgaagctttg cattggtccg tcagagtaaa tgccaccgcg
    13861 agcattaagc agggcaattt ttttatcagc aactaaacct acagggccgt ttgcagtgta
    13921 tttaaatgtt ttgccagctt gatttaaata gaataagtat gttaaaaatt gggctgggat
    13981 actgaagttc caaagtggga acgccatgac gattttgtct gcagctaaaa attgatctaa
    14041 gtagctgtta gcaatatcag ctaagcgttt ttcttctggg cttagtgttt ctccagctgc
    14101 ttctttatgt aatccactca tcattgttac atcataataa ggtagatccg cttcaaataa
    14161 atcaagttct gttacattat cgtccggatg ggactttttg tattccgtta gaaagatttc
    14221 atatagtgcc acgctgactg agcgttcggc aggtaaacca tttgctttga tgaaaagtac
    14281 gtttgtcatt acatcttgcc tccatttttt ttgaattatc tattaagtgt agcccatttt
    14341 cacgataaac agcaagtata ttgcttacaa aaaattagcc gctaatgttt gagcagatat
    14401 tttgtgcttt tggaaaggaa gcgtataata gttgatatat catttgacgt atcaactatg
    14461 ggggtgaaaa cgctgaaacc atgtacagaa caatctgaat tactttaccg gatgcactta
    14521 ttatccaagg aaattagcca tgtatttgaa caacaaacga atatgagttt tacgaaagta
    14581 gagattctat ttcatattca acaaacacca ggtcaaagtc aaaatcgact acgagagaag
    14641 ctttatattg attcggcaag tattacccgt catttgaagc gaatggaagc gcaagggctg
    14701 attgttcgga aaaagcaaga tgaaaacaaa cgctatacgt atttattttt aacatcagcg
    14761 ggtgaggcgg aattagccac tttacttttg gaaaaagaaa aatttcagaa cggggcgcta
    14821 gaagcctttt cagaagaaga agttagtgcg ttacttaaat cagtcacaaa aatgatgaat
    14881 aatgtagaga aaatggagga gaagtaaaaa tgaaagcagt tgtaattgaa aattatggtg
    14941 gcaaagaaga attaaaagaa aaagaagtag ctatgccaaa agcgggtaaa aatcaagtga
    15001 ttgtcaaaga agcagcgaca tcaattaacc caattgattg gaaacttcgt gaaggatact
    15061 taaaacaaat gatggactgg gaattcccga ttattttagg atgggatgta gcgggtgtta
    15121 tttccgaagt tggagaaggc gtaacagatt ggaaagtcgg cgatgaagta ttcgcacgcc
    15181 ctgagacaac gcgttttggt acgtatgctg aatatacagc ggtagatgat cacttgcttg
    15241 caccacttcc agaaggaatt agttttgacg aagcagcatc gattccactt gcaggcttaa
    15301 ctgcttggca agcattgttc gatcacgcga aattacaaaa aggtgaaaaa gtcttgattc
    15361 atgctggtgc tggtggtgtt gggacgttgg cgattcagct tgccaaacat gcaggagcag
    15421 aagtaatcac aacagctagt gcgaaaaacc atgaattact aaaatctctt ggcgcagacc
    15481 aagtcattga ttataaagaa gttaatttta aagatgttct ttctgatatt gatgtggtgt
    15541 tcgatacaat gggtggtcaa atcgaaac
//
LOCUS       DABQVC010000052        15500 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.052,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000052 DABQVC010000000
VERSION     DABQVC010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15500
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.052"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(19..888)
                     /gene="dat"
                     /locus_tag="IBJ56_001158"
     CDS             complement(19..888)
                     /gene="dat"
                     /locus_tag="IBJ56_001158"
                     /EC_number="2.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino-acid transaminase"
                     /protein_id="HAM3417417.1"
                     /translation="MKVLVNNHLVEREDATVDIEDRGYQFGDGVYEVVRLYNGKFFTY
                     NEHIDRLYASAAKIDLVIPYSKEELRALLEKLVAENNINTGNVYLQVTRGVQNPRNHV
                     MPDDFPLEGVLTAAAREVPRNEQQFVQGGPVITEEDVRWLRCDIKSLNLLGNILAKNK
                     AHQQNALEAVLHRGEQVTECSASNISIIKDGVLWTHAADNLILNGITRQVIIAVAKKN
                     GIPVKEADFTLTDLREADEVFISSTTIEITPVTHIDGVQVADGKRGPITAKLHQYFVE
                     EIVQACGELEFAK"
     gene            complement(1001..2413)
                     /gene="pepV"
                     /locus_tag="IBJ56_001159"
     CDS             complement(1001..2413)
                     /gene="pepV"
                     /locus_tag="IBJ56_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepV"
                     /protein_id="HAM3417418.1"
                     /translation="MTEINWQKEVESRKDDFLEDLKGLLRIPSVRDDSKKTEDAPFGP
                     DVKRALDYMIELGKKDGFTAKEVGNVAGHLEYGQGEELVGVLGHVDVVPVGDGWTNGP
                     FEPTLRDGKLYARGVADDKGPTIAGYYALKIIKELGLPLSRRVRIIVGSDEESGMSCV
                     ERYFETEEQPTLGFVPDAEFPIIHAEKGISELDVSFKDGEASGEAAFRLLSVESGERY
                     NMVPDHATAILEDVKDFDKLANAFKTFLANHPVEGTLEENGKSVKINIVGKSAHAMEP
                     NNGVNAGLHLVAFLGKFKLTGAANDFVTFGRDYLFGDSRAVKLGISYEDEESGELTMN
                     VGVIRYDVAEGGKYGLNFRYPVTANMDKLKNKMQTVVYEYNAQYTHYEDSKPLFVPKD
                     HPLIQVLQEVYTKQTGEEATLLAIGGGTYARHMETGVAFGALFPGREDTMHQKDEFSY
                     FDDLLKATAIYAEALYKLAK"
     gene            complement(2488..2901)
                     /locus_tag="IBJ56_001160"
     CDS             complement(2488..2901)
                     /locus_tag="IBJ56_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HAM3417419.1"
                     /translation="MKPIYPAVKAVIVKDGKFLALKKKGVEGEVFELPGGRMNYGETH
                     GEALFREVYEETKLQVQPFILYDTWEFFHEDFQITGVIYLVEMPEGGEIELSDEHEEY
                     RFLPLEKESLNVMDIVFSSRMERWDFEAIKGFMRK"
     gene            3006..3836
                     /locus_tag="IBJ56_001161"
     CDS             3006..3836
                     /locus_tag="IBJ56_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HAM3417420.1"
                     /translation="MKKITPKAMCAWIPKREDETHKADYGRVLIVAGNKQFGGAAIMA
                     AEACVKSGAGLTTVASDSVNRPALQTRIPECMFIDYENISSLSEQISQFDTILIGPGL
                     GLDAYAEEIFRLVLEKSTEQQQVIIDGDGITIYAKGENPHPAAKLTFTPHAGEWERLK
                     VLAPDAVTPTDVALAIDATIVLKGHRTKVYSGESAWQNMYGTPAMATGGMGDTLAGTI
                     CGLMAQTEKPITGTLAAVFLHSYIGEILAKKRYVVLPTEIAEELPTYLKIFSETDEHA
                     "
     gene            complement(3874..4527)
                     /locus_tag="IBJ56_001162"
     CDS             complement(3874..4527)
                     /locus_tag="IBJ56_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HAM3417421.1"
                     /translation="MKKTPFIISGIALLGFIFFMTGVMTGAKWIQHFDDYWNSIIRVG
                     ITNTKTTVISYLTDIGGVATICILTAVIVVIFVVIRKVDMAIWFGGIVLIGGALIPSI
                     IKNIVQRPRPTYKLIEQGGFSFPSGHSTGSTVFYGMLAFLLILYVSRRWLRFTIGILA
                     FGLVIFIMYSRVYLGVHFPSDVVAGFLIGNAALFSGIGCYFIWNQKLALWASRFKKA"
     gene            complement(4537..6150)
                     /locus_tag="IBJ56_001163"
     CDS             complement(4537..6150)
                     /locus_tag="IBJ56_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HAM3417422.1"
                     /translation="MGSKLLRGTFILTLGTLISKVLGILYVIPFYAIIGGDEPALLYN
                     FGYVPYQLFLSIATAGIPLAVAKYIAKYNAMEEYAVGRRLFKTGVYLMIFSGIVCFLA
                     MYGLAPTLARMQQLEGGYSLADGIQVIRAVSFALLIIPVMSLLRGFFQGYNSMGPSAV
                     SQVLEQVVRIMFLLAGTFIVMYVLDGNVVTAISIATFSAFVGAFASLLLLLWYFYKRK
                     PGLDRMLLEDRGTVKISIPTLYKDIILSAIPFIIVGSATSLYQLIDQFTLGRVLEYIG
                     ITPELVNSYVAIINFDVQKLIMIPGTLAIAFSMALVPLVTGAYVRKEYAQVKRQLNDV
                     FQILLFLTIPACFGIAMLARPLFTVFFSPSDNGTALLQLFAPIAILFSLFSVSAAVLQ
                     GIDEQRFTVLGLLLGLLAKSVLQMPLIMLFEAKGSIIATGIGYAVSCIFMLLIIKKYV
                     RFSFKVILRRTVLFFGMTALMGLVVIALYIMMSNFVSTDRKIPALMITIVCGGVGAIF
                     YGYMAFKLHLSDKLFGPRGTRLREKLRIR"
     gene            complement(6261..7874)
                     /locus_tag="IBJ56_001164"
     CDS             complement(6261..7874)
                     /locus_tag="IBJ56_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HAM3417423.1"
                     /translation="MSSKLMRGTAVLTAGTLLSKILGILYVIPFYWIAGGEQATILYQ
                     YGYVPYQIFLNIATAGVPLAVAKYISKYNSLNEYALSQRLYRSSTYLMIFTGIVSFLI
                     MYIFAPILAGMQEVSGGTSIEDITTVIRAVSFALLIIPVMSLLRGYFQGFHSMGPSAV
                     SQVIEQIARIVFLLASTYIVLHLIGGSLVTAMSLATFAAFVGAFFSLICLIWYYRKRK
                     PGIQKMIAGSDNKLRVSTFHLLKEISISAVPFIIVGMAMSLYQQIDLFTFARVLTYDG
                     MDGKTAEDLLSIFNFSVQKIIMIPGTLALAFSMTLVPLVAASFHKGRIREVHHHLTAV
                     FQVLLFLVVPACLGIALLADPLYTIFYGYNADGSMLLQFFAPFAIFFSLFSVTAAILQ
                     GIDEQRYTVLSLLLGLLTKSVLQMPLILLLGAKGGALATGLGYIVSVVFTIFIIKKYA
                     KYSFKYLFRRLILILGISAVMLLSVWLIYHGLILFLNPHARLTALVIVFVSAGFGAYI
                     YAFLAAKAGLLNYILGDRMYKIRKKLHLI"
     gene            complement(7959..8396)
                     /locus_tag="IBJ56_001165"
     CDS             complement(7959..8396)
                     /locus_tag="IBJ56_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417424.1"
                     /translation="MSVEVKPEHARMLNNTKNVTLGIAIVSTIQAVLSAVSIVGLFAL
                     QQRKEVLANAHATAVVQNTIMTTTIMAVICIAFTIMLFLSFNKLRKGIIITPLVYYLY
                     AAFTILGVILSMINSGVNFVSLILPAVLLALSVTCILNLRRMR"
     gene            complement(8467..9240)
                     /locus_tag="IBJ56_001166"
     CDS             complement(8467..9240)
                     /locus_tag="IBJ56_001166"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HAM3417425.1"
                     /translation="MTKTLTNKLAKKDHAAVVTYIMGGDDGLDNLEEQLLFLEKSGVS
                     AIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILNKLARSKVQIPLIIMSYINPIF
                     HLGIPKFVELVQKTPVKGLIIPDLPYEHQTLITPELQGTDIALIPLVSLTSPKERLEE
                     IAKQAEGFIYAVTVNGTTGVRSEFDAHIDNHLAYLKSISPVPVLAGFGVSSIEHVEKF
                     AHVCDGVIIGSKVVQMLHEEKTAELGAFLQKAAEVRIEN"
     gene            complement(9233..10435)
                     /gene="trpB"
                     /locus_tag="IBJ56_001167"
     CDS             complement(9233..10435)
                     /gene="trpB"
                     /locus_tag="IBJ56_001167"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HAM3417426.1"
                     /translation="MTYQAPDENGFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAF
                     QKELNYYLKEYVGRETPLYFAEQLTAHAGGAKIYLKREDLNHTGAHKINNTIGQALLA
                     RQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELLGAKV
                     VSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARK
                     QHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATIS
                     KGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDD
                     EAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPEESMVVCLSGRGDKDVNQLKE
                     RLEGQTND"
     gene            complement(10438..11046)
                     /locus_tag="IBJ56_001168"
     CDS             complement(10438..11046)
                     /locus_tag="IBJ56_001168"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HAM3417427.1"
                     /translation="MIVKICGLKKAVDVAAAVDNGADMIGFVFAKSKRQVTVEKAHEL
                     AKNIPANVKKVGVFVNPTEEELKAAIKGVPLDIVQLHGQEPAKQANRTDAKVIKAFPV
                     KDGKLPTNINDYPNAYILLDAPAEEYEGGSGKTFDWDKINRDMLTKNKLIIAGGLNAQ
                     NVQEAIKRFEPYAVDISSGVETNGEKDPEKIKCFIKTAKGVE"
     gene            complement(11043..11801)
                     /gene="trpC"
                     /locus_tag="IBJ56_001169"
     CDS             complement(11043..11801)
                     /gene="trpC"
                     /locus_tag="IBJ56_001169"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HAM3417428.1"
                     /translation="MTFLEEILAQKAVEVADMPLEKVAEKRKTYSFYEFLKANTNSMQ
                     LIAEVKRASPSKGEINMGVNPVLQARSYQAAGAGMISVLTDPVFFKGSIEDLREVAKN
                     VEIPVLCKDFIISEKQLIRARNAGATVVLLIISALTEEMLIALFEQALALDLEVLVEV
                     HDQKELAVAQKIGAKLIGVNNRNLHTFEVDIAVSERLASDFSSDACFISESGFRTAED
                     VARVSQKYNAVLVGEALMREATPEAAAKSLKVTR"
     gene            complement(11798..12817)
                     /gene="trpD"
                     /locus_tag="IBJ56_001170"
     CDS             complement(11798..12817)
                     /gene="trpD"
                     /locus_tag="IBJ56_001170"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HAM3417429.1"
                     /translation="MEILLQKVYDQENLSKEEMTMIATEIFEGRLSKTKIAAFLMALK
                     VKGETAEEMAGIAQAMQRVAIQVAFPAGTAMDNCGTGGDKSNSFNISTTSAFVLAAAG
                     IPVAKHGNRSISSRSGSADVCQELGIDINMRPEDMTYLLEKVGIAFLFAPHVHPNMKY
                     VMDVRKELGTPTIFNLIGPLTNPVHLETQLMGIYRRDLLEQTAEVLGQLGRKRAVVLN
                     GAGFMDEASLAGENHYALYENGEVHLYTLRPEDVGLTSYPLEAITGGEAKENAAILRS
                     VLDGEPGAYLDTVLLNAGFGLFANGKVTTVQEGVDLARDLIRSGLAKQKLADLITYQK
                     EVLAK"
     gene            complement(12789..13394)
                     /locus_tag="IBJ56_001171"
     CDS             complement(12789..13394)
                     /locus_tag="IBJ56_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HAM3417430.1"
                     /translation="MILLIDNYDSFTFNLEQYLAEFSEVVVKRNDAADLMEIAALADG
                     IVLSPGPGKPSDAGLLEEVVAKFAKEKPLLGICLGHQAIGEVFGGDVKRAAKIRHGKV
                     STMRQTAGAIFANLPEEMPVMRYHSLIVDKNTLPQVLEVLAVATDDAEVMAMKVKDYP
                     VYGLQFHPESIGTNDGKQMMENFIYIVEGARENGNLTTKSI"
     gene            complement(13391..14755)
                     /gene="trpE"
                     /locus_tag="IBJ56_001172"
     CDS             complement(13391..14755)
                     /gene="trpE"
                     /locus_tag="IBJ56_001172"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HAM3417431.1"
                     /translation="MRKTKKIDADTLTAILAFQRLSGTGKSLLEGAAKDAEAGRYSII
                     AINPVHEIKVYQHDYYIDGIHQVVADPLKEIELFIEKAKEDEADLPLDSGAIGYVGYD
                     VIALYENLGEIPVETRDMPDIRFYVYESFVIMDHQAEELILVQDNCYSGRSEAELDKA
                     LELMFTELTTPKKEEHKAVHVPKMTYKSNYTKEEYMGLVKKAKTYIQEGDFFQIVLSQ
                     RLEADFTVTPFDYYRKLRLLNPSPYLYFIDFGDTVLIGSSPESLIKTKGRTVITNPIA
                     GTRRRGATKQEDELLASELLSDEKELAEHRMLVDLGRNDIGKIAETGSVHVPVYLTIE
                     RYRFLMHLVSVVEGTLKPGLTAMDALRSTLPAGTVSGAPKIRAMERIYEWENVKRGPY
                     AGAVGYLTKNGDSDFALSIRTMVLHNGKAYVQAGAGIVYDSDPESEYLETLQKAKALL
                     EVGE"
BASE COUNT         4706 a         3473 c         2556 g         4765 t
ORIGIN      
        1 aaggaaggtt tccacttatt attttgcaaa ttctaattcg ccacatgctt gaacgatttc
       61 ttctacaaaa tattgatgaa gttttgcggt aataggtccg cgttttccgt cagctacttg
      121 cactccgtcg atatgggtaa ctggggtaat ttcgattgtt gtgcttgaaa tgaatacttc
      181 atcggcttca cgaagatctg ttaaagtaaa atcagcttct ttgaccggaa taccattctt
      241 tttcgcaaca gcaataatta cttgacgagt aataccattt aagattaaat tatctgctgc
      301 gtgcgtccat aacacaccgt ctttaataat agaaatattg gaagctgaac actcagttac
      361 ttgctctccg cggtgtaaaa cagcttctaa cgcattttgt tgatgtgctt tgttttttgc
      421 taaaatgttt ccaagtaaat tcaaactctt gatgtcacag cgtaaccaac gaacatcttc
      481 ttctgtaatt actggtccac cttgcacaaa ttgttgttca tttcttggta cttcacgagc
      541 tgctgctgtt aaaacgcctt ccagcgggaa atcatctggc ataacgtgat tacgcgggtt
      601 ttgaacacct cgagtcactt gtaaatagac atttcctgta ttaatattat tttcagcaac
      661 taatttttca agtaacgctc gtaactcttc tttcgaataa ggaataacta agtcaatttt
      721 tgctgcactc gcatataaac gatcaatgtg ttcattataa gtgaagaatt ttccattata
      781 tagacgaact acttcatata caccatcacc aaactgatat ccgcggtctt caatgtcaac
      841 tgtggcatct tctctttcca ctaaatggtt atttactaat actttcatct caagtctctc
      901 cttgcatagt taatttttgg aactatctaa aaacttaatg aaacaaagaa actgccgcaa
      961 aactaagctt tgcagcagtt aattttttca attataaccc ttacttcgct aatttgtaaa
     1021 gtgcttctgc ataaattgca gtagctttta acaaatcatc aaaatagctg aattcgtctt
     1081 tttggtgcat cgtgtcttca cggcctggga atagtgcgcc gaacgccaca ccagtctcca
     1141 tgtggcgcgc ataagttccg ccaccaattg ctagtaaagt agcttcttca cccgtttgtt
     1201 ttgtatacac ttcttgtaaa acttgaatta gcggatgatc ttttggtacg aaaagtggtt
     1261 tggaatcttc gtaatgcgtg tattgcgcat tgtactcata aactactgtt tgcattttat
     1321 ttttcaattt gtccatatta gcagttactg gataacggaa attaagtccg tattttccac
     1381 cttctgctac atcgtaacga ataacgccaa cgttcattgt tagttcgccg ctttcttcgt
     1441 cttcatagct aatacctaat ttaactgcac gggaatcgcc gaataggtaa tcgcgaccaa
     1501 atgttacgaa atcatttgcc gcgccagtca gcttgaattt accaaggaaa gctactaaat
     1561 gaagaccagc gtttacaccg ttatttggtt ccattgcatg ggcagattta ccaacaatat
     1621 taattttaac ggatttgccg ttttcttcta atgttccttc tactggatgg tttgctagga
     1681 aggttttgaa tgcattcgct aatttatcaa agtcttttac gtcttctaaa atagctgttg
     1741 cgtgatctgg aaccatgttg taacgctcgc ctgattctac gctaagtaaa cggaaagccg
     1801 cttccccgct tgcttcacca tctttaaaag atacatctag ttctgagata cctttttccg
     1861 cgtgaatgat tgggaattct gcatcaggaa caaaaccaag tgttggttgt tcttctgttt
     1921 caaaataacg ttccacacag ctcataccgc tctcttcatc agaaccaaca atgattctaa
     1981 cacggcgaga aagtggtaat cctagttctt taataatttt tagcgcatag taacctgcaa
     2041 ttgttggtcc tttatcgtcc gcaaccccac gagcgtataa tttgccgtcg cgtaaagttg
     2101 gttcgaatgg tccgttcgtc caaccatcac caactggtac tacatccaca tggcctaaaa
     2161 cgccaactag ttcttctcct tgaccgtatt caaggtgtcc tgctacgttt ccaacttctt
     2221 tcgctgtgaa gccgtctttt ttaccaagtt caatcatata gtcgagcgcg cgtttcacgt
     2281 ctggtccaaa cggcgcatct tctgtttttt tactgtcatc gcgaacactc ggaatgcgaa
     2341 gaagcccttt taaatcttct aagaaatcat ctttgcgtga ttccacttct ttttgccaat
     2401 taatttctgt cataattgtt attccctcct tcaaacttat cttctctatt gtaaactgtt
     2461 tttacgtagc ttggaagccg gaactcccta ttttctcata aaacctttaa ttgcttcaaa
     2521 atcccagcgt tccatgcgcg aagaaaaaac gatatccatg acatttaaac tttctttttc
     2581 tagtggtaaa aagcgatatt cttcgtgttc atcggataat tcgatttcgc caccttctgg
     2641 catttctacc aaataaataa caccggtaat ttggaaatcc tcatggaaaa attcccacgt
     2701 atcatataaa ataaatggct gtacttgtaa ttttgtttct tcataaactt ctctaaaaag
     2761 ggcttccccg tgcgtttcac cataattcat gcggcctcct ggaagttcaa aaacttctcc
     2821 ttctacccct tttttcttta gtgctaaaaa ttttccgtct tttacgataa ctgctttcac
     2881 tgcaggatat ataggtttca ttttacaaaa gcctccttat catttaagat aaacatgatt
     2941 tatctgttct ttattttacc cggttgagta gataaaagcc agtgtcataa ggaggtttta
     3001 caaaaatgaa aaaaataaca ccaaaagcaa tgtgcgcatg gattcctaaa cgcgaagatg
     3061 aaacacataa ggctgactat gggcgcgttc tgattgtcgc tggaaataaa caatttggtg
     3121 gtgctgctat tatggcggca gaagcttgtg tcaaaagtgg tgctggttta acaaccgtgg
     3181 cctccgatag tgtcaaccga cctgctctcc aaacaagaat acctgaatgc atgtttattg
     3241 attatgaaaa tatctcgagt ctcagcgaac aaatcagcca atttgatacg attttaattg
     3301 gtcctgggct tggacttgat gcctatgcgg aagaaatttt tcgtttagtt ttagaaaaat
     3361 caaccgaaca gcaacaagta attattgatg gtgatgggat tactatttat gcaaaaggag
     3421 aaaatcccca tcctgccgcg aaactaactt ttacgcctca tgctggagaa tgggaaaggc
     3481 ttaaagtatt agcgccagat gccgtaacac caactgatgt agcgcttgct atcgacgcaa
     3541 cgattgtttt aaaagggcac cgtacaaaag tgtattctgg cgagtctgct tggcaaaata
     3601 tgtacggaac accagcaatg gcaacaggtg gtatgggtga tacgcttgcc ggtacaattt
     3661 gtggcttaat ggcgcaaact gaaaaaccga ttaccggcac tctagccgcg gtctttcttc
     3721 acagctatat cggcgaaatt ttagctaaaa agcgctatgt ggtacttcca accgaaattg
     3781 ccgaagaatt accgacttac ttgaaaattt ttagcgaaac tgacgaacat gcttaataaa
     3841 aaatcctccc tttttgaaag agaggatttt tttctatgct tttttaaatc tactcgccca
     3901 taatgctaat ttttgattcc aaatgaagta acatccaatg ccactgaaaa gtgctgcatt
     3961 gccgattaag aatcctgcaa ccacatcgct tggaaagtgc acccctaagt aaacacgcga
     4021 atacatgatg aaaataacta gaccaaaggc tagaatgcca attgtaaatc gaagccatct
     4081 gcggctcacg tatagaatta acaagaaagc aagcatacca taaaataccg tagaaccggt
     4141 cgaatgtcca cttggaaaac taaatccacc ttgttcgatt aatttatacg taggccttgg
     4201 tcgttgaacg atatttttaa taattgacgg gataagtgct ccaccaatta aaacaatacc
     4261 accaaaccaa atcgccatat ctacttttcg aatgacaaca aatataacga caatgactgc
     4321 tgttaaaata caaatggtcg cgactccgcc aatatccgtt agataagaaa tcaccgttgt
     4381 tttcgtattc gtaatgccta cacggataat actgttccaa taatcatcaa aatgttgaat
     4441 ccactttgca ccggtcataa cgcctgtcat aaagaaaata aatccaagga gagcgatacc
     4501 gctaataata aatggtgttt ttttcatata atcctcctag cgaattctta atttttcacg
     4561 cagtctcgtt ccacgtggcc caaataattt atcggataag tggagtttaa atgccatgta
     4621 accatagaaa attgcaccta ccccgccgca aacgattgta atcattaatg caggaatttt
     4681 ccggtctgtt gatacaaagt tagacatcat aatataaagc gcaataacta caagccccat
     4741 taaagccgtc atcccaaaga aaagtaccgt tcgccgtaaa ataactttga acgaaaaacg
     4801 aacatatttc ttaataataa gtagcatgaa aatacaagat accgcatagc caattccggt
     4861 tgcaataatg gatccctttg cctcaaataa cataatgagc ggcatttgaa gaactgattt
     4921 agccagtaga ccgagtaata aaccaagtac ggtaaatcgt tgttcatcaa tcccttgaag
     4981 gactgcagca gatacgctaa ataaggagaa taaaatagcg attggcgcaa aaagttgtag
     5041 taatgctgta ccgttatcac ttggcgagaa aaacaccgta aatagcggtc ttgctagcat
     5101 cgcaatccca aaacaagctg gaattgttaa aaataataaa atttgaaaaa catcattaag
     5161 ttgacgcttc acttgcgcat attcttttct cacataagct cccgtcacta gtgggacaag
     5221 cgccatcgaa aacgcaatcg cgagtgtgcc gggaatcata atcaattttt gtacatcaaa
     5281 gttaataatt gccacataag aattcactag ttccggcgta atgccaatat attccagtac
     5341 ccgtcctaat gtaaactggt caatcaattg ataaagggat gtagcagatc caacaataat
     5401 aaacggaatc gccgaaagaa taatatcttt ataaagcgtc gggatagaaa ttttcacagt
     5461 ccctctgtct tctaaaagca ttcggtccag tccaggtttt cgtttgtaaa aataccaaag
     5521 aagtaaaagt agacttgcaa aagcgccgac aaacgcggag aaagtagcaa tactaatagc
     5581 cgttacgaca ttcccatcaa gtacatacat gacaataaat gttccagcaa gtaagaacat
     5641 aatccgaaca acttgttcta acacttgcga tacagcagaa ggtcccatcg aattatatcc
     5701 ttggaaaaag cctcgtagta aactcattac cggaataatt agtaaggcga aactaactgc
     5761 acgaataact tgaatcccat ctgctaaact ataaccgccc tccagttgtt gcatccgagc
     5821 aagcgttgga gcaagtccat acattgctag gaaacagaca atgccggaga aaatcattaa
     5881 atatacaccg gttttaaata aacgtcgacc tacagcgtat tcttccatcg cattatattt
     5941 tgctatatat ttagcaacag ccagcggaat ccctgcagtc gcaatgctta agaataattg
     6001 atacggcaca taaccgaaat tatatagaag cgctggttca tctcctccaa taatcgcata
     6061 aaacggaatc acatacaata ttccgagcac tttagagatt aatgtcccta gcgtcagaat
     6121 aaatgttcct ctgagcagtt ttgaacccat cgtctaactt cctttacatt aaattatata
     6181 tccttgttta ctttaccatt aactctttta aaaaaaaaga acaaacccaa ataaatatcg
     6241 gcttgttctt tacaaaaagt ttaaatcaaa tgaagttttt tacgaatttt atacattcgg
     6301 tcccctagaa tatagtttaa cagacctgct tttgcagcca aaaacgcata aatataggca
     6361 ccaaagccgg ctgaaacaaa aacaataact agtgctgtta atcttgcatg tggatttaaa
     6421 aataaaatca agccatgata aatcaaccag acactaagaa gcatcaccgc actaattcct
     6481 aaaataagta taagccgtct aaataaatat ttaaacgagt acttcgcata ttttttaata
     6541 ataaaaatgg tgaatactac ggaaacaata taaccaagtc ccgtagctaa tgccccacct
     6601 tttgccccta aaagtaaaat taatggcatt tgcaacactg attttgtcag taaaccaagt
     6661 aagagactaa gaaccgtgta ccgttgttca tcaattcctt gcaaaatcgc ggctgttaca
     6721 ctaaataacg agaagaatat ggcaaatggc gcaaaaaact gaagtaacat cgaaccatct
     6781 gcattataac cataaaaaat ggtgtaaagc ggatccgcta aaagggcaat tcctaaacaa
     6841 gctggcacaa ctaaaaatag taacacttgg aaaacagccg tcaaatgatg atgaacttcc
     6901 cgaattcgcc ctttatggaa agatgccgcc actaaaggca caagtgtcat cgaaaatgcc
     6961 aaggctaaag ttcccggtat cataataatt ttttgaacgg aaaagttgaa aattgaaagc
     7021 aaatcctccg ctgttttccc gtccatacca tcgtaggtta aaacacgagc aaacgtaaat
     7081 aaatcaattt gctgataaag cgacatcgcc attccaacaa taataaatgg caccgcagat
     7141 atcgaaattt cttttaatag atgaaaagtc gaaacgcgca acttgttgtc actgccagca
     7201 atcatttttt gaatacccgg cttccgtttt cggtaatacc aaatgagaca aatcaagctg
     7261 aaaaacgcac caacaaaagc cgcaaaagtc gctaaactca tcgctgtaac aagacttcca
     7321 ccaattaaat gtaagacaat atacgtacta gcaagtaaaa atacaattct cgctatttgt
     7381 tcaattactt gtgacacggc agaaggtccc atcgaatgaa atccttggaa atacccccga
     7441 agtaaactca ttacaggaat aataagtaat gcaaaactta ctgcgcgaat aaccgtcgta
     7501 atatcttcaa tactcgttcc gccactaacc tcttgcatcc ccgcgagtat cggggcaaaa
     7561 atatacatta ttaaaaaact aacaatccct gtgaatatca ttaaatacgt acttgatcta
     7621 tacaatcgct gacttaaagc atattcattt aacgaattat acttcgaaat atatttggca
     7681 actgctaaag gtactccagc tgtcgcgata tttaagaaaa tttggtaagg gacatatcca
     7741 tattgataga gaatcgttgc ttgttccccg ccggcaatcc agtaaaatgg aataacatat
     7801 aaaatcccta agatttttga aagcaatgtt ccagcggtaa gcacagccgt tcctcgcatt
     7861 aattttgaac tcataatttc tgttacctcg attgattttt tcttttaagt ctgtctgtta
     7921 aatcgggtta tgtaaaaatc attcttacac tactactttt atcgcattct tctaagattt
     7981 aaaatacaag ttacacttaa agcaagtagt actgctggta aaataagcga aacaaagttc
     8041 acaccactat taatcattga caaaataaca ccaagaatag taaatgcagc gtataaataa
     8101 tatacaagcg gcgtaattat aatacctttt ctaagtttgt taaaagaaag aaataacata
     8161 atcgtaaacg caatacaaat aactgccata atggtagtcg tcataatcgt attttgaacg
     8221 accgcagtgg catgtgcatt agcaagtact tcttttcttt gttgtaacgc aaaaagacct
     8281 acaatagaga ctgcacttaa tactgcttga atagtcgata caatcgctat tccaagtgtg
     8341 acatttttcg tgttattgag cattctcgca tgctctggtt taacttcaac agacatcctt
     8401 acaactcctc tttaacattc tatacaccag actttaccat atttaaagag aaattgtaag
     8461 tagtaattag ttttcgattc gaacttctgc ggccttttgt aaaaacgctc ctagctctgc
     8521 cgttttttct tcatgtaaca tttgcacgac tttactaccg attattacac catcacatac
     8581 atgcgcaaat ttttccacat gttcaataga agaaacacca aaacctgcga gaactggaac
     8641 agggctaatg ctttttaaat aagctaaatg gttatcaata tgggcatcaa attcactcct
     8701 cacaccggta gttccgttaa ctgttactgc ataaataaac ccttctgcct gtttcgcaat
     8761 ttcttcgagg cgctctttcg gacttgtcaa tgaaacaagc ggaataagtg cgatatctgt
     8821 cccttgaagt tctggcgtaa tcagtgtttg gtgctcataa ggtaaatcag gaataataag
     8881 ccctttcacc ggcgttttct gcaccaattc aacaaatttc gggataccta aatgaaaaat
     8941 cggattaata taactcataa taattagcgg aatttgcact ttactcctag ccaatttatt
     9001 taaaatggct tctaaactca cttgctcctt taaagcacgt aacccagcaa gttgaataat
     9061 cggaccgtcg gcaaccggat cagaaaaagg aataccaatt tcaatcgcgc ttacaccaga
     9121 tttttcgaga aacaataact gttcttctaa attatctaag ccatcatcgc cacccataat
     9181 gtaagtaact acggcagcat gatctttttt cgctagttta ttcgttaatg ttttagtcat
     9241 ttgtttgtcc ctccaagcgt tcctttagtt gattaacatc tttatctccg cgaccagata
     9301 aacaaacgac catactttct tctggacgca tttggcttgc aagtttgact gcataactaa
     9361 tcgcgtgcga gctttcgagt gcaggaatga ttccttccgt acgacataaa agttgaaatg
     9421 cttcaacggc ttcatcatcg gtaacagaat ggtacgctgc acgacctaaa tcacggaaaa
     9481 agctatgctc cggaccaata cctggataat ctaagccagc tgaaatcgaa aatgcttcca
     9541 aaatttgtcc attctcatct tgtaaaacgt ccatcatcgc tccgtgtaaa atcccgattt
     9601 ctcctttgga aatagtcgct gcatggaatt cagtttctaa accgtgtccc gctgcttcca
     9661 caccgtgcat ttgaacagaa acatcatcta caaatggata aaataacccc atcgcattac
     9721 tcccgcctcc aacacaagca acaattgcat caggaagctt accttctttt tccaagtgtt
     9781 gtttgcgtgc ttctattcct atcacacttt ggtaatcacg aacaatttct ggaaatggat
     9841 gcggtccaag aacggatccc ataatgtaat gcgtgtcttc cacattagca acccagaatc
     9901 tgagcgcctc atttactgcg tcttttaatg ttctgcttcc tgctttcacg ctcactactt
     9961 ttgcaccaag aagttccatt ctaaacacat tgagtgattg gcgtttcaca tcttcttctc
    10021 ccataaaaat agtacattcc atattaaaaa gtgctgcaac agttgcagtc gccaccccgt
    10081 gttgtcctgc gccagtttct gccactactt tttgtttgcc catttgacgt gcgagtaagg
    10141 cttgcccaat agtattattg attttatgtg cgccagtatg atttaaatct tcgcgtttta
    10201 aataaatttt tgctccgccc gcatgtgctg ttaattgttc agcaaaataa agtggtgttt
    10261 ctcggcccac atattctttt aaataatagt ttaattcttt ttgaaaagca ggatctgttt
    10321 tggaagcccg gtacgcctcg tctaattctt tcactgcttt cattaatgtt tctggtacaa
    10381 atctgccgcc aaattttccg taaaagccat tttcgtcagg tgcttgataa gtcattatta
    10441 ttccactcct tttgctgttt taatgaagca tttaattttc tccggatctt tttctccgtt
    10501 tgtttctacg ccagaggaaa tatctactgc atatggttca aagcgtttaa tggcttcttg
    10561 tacattctga gcatttaatc cgccagctat aattaatttg ttttttgtaa gcatgtctct
    10621 atttatttta tcccaatcaa atgtttttcc gctgccgcct tcatattcct ctgctggtgc
    10681 atcaagtaaa atataagcgt ttggatagtc atttatattg gtaggaagtt tcccatcttt
    10741 cacaggaaaa gctttgatta cttttgcatc tgtgcgattt gcttgttttg cgggttcttg
    10801 tccgtgaagt tgaacaatgt ctaatggcac acctttgatt gctgccttta actcttcttc
    10861 agtaggatta acgaataccc cgactttttt gacgttagcg ggaatatttt tagctaattc
    10921 atgtgccttt tccaccgtaa cttggcgttt actttttgcg aaaacgaagc caatcatatc
    10981 tgcgccatta tcgaccgcag ccgctacatc tactgctttt ttcaatccac aaatttttac
    11041 aatcatcgtg tcaccttcaa acttttcgcc gctgcttctg gagtcgcttc tcgcattagc
    11101 gcttctccaa caagtactgc attatatttt tgactaaccc gagccacatc ttcagctgtt
    11161 cgaaaacctg attcacttat gaaacaagca tccgacgaga aatcgctcgc cagtctttca
    11221 cttactgcaa tatccacttc aaatgtatgc aaattacggt tgttcacacc aatgagttta
    11281 gctccaattt tttgagcaac agctaattct ttctggtcat gtacttccac taacacttcc
    11341 aaatcaagcg ccagagcttg ttcaaacaga gcaattagca tctcttctgt aagtgccgaa
    11401 ataattagca atacaaccgt tgctcccgca tttcgagcac gaatcaattg tttttcacta
    11461 ataataaaat ctttacaaag tacaggaatt tcgacatttt tcgctacttc tcgcaaatct
    11521 tcaatcgagc ctttgaaaaa aacaggatct gtcaaaacag aaatcattcc cgcacccgca
    11581 gcttgataag acctggcttg cagaaccgga ttcacgccca tattgatttc ccctttagaa
    11641 ggagaggcgc gttttacttc tgcaataagt tgcatcgagt tggtatttgc ttttaaaaat
    11701 tcataaaacg aataagtttt ccgtttttcg gctacttttt ctaagggcat gtctgcaact
    11761 tctactgctt tttgcgctaa aatttcttct aaaaatgtca ttttgctagc acctcttttt
    11821 gataagtaat taaatctgcc aatttttgtt tggctaaacc acttctaatt aaatctcttg
    11881 ctaaatccac gccttcttgt accgttgtca ctttgccatt tgcaaataaa ccaaatccgg
    11941 catttaaaag cactgtatct aagtaagctc ctggttctcc gtcaagcaca ctacgcaaaa
    12001 ttgctgcatt ttctttagct tctccgcctg taattgcttc gagaggatag ctagttaaac
    12061 caacatcttc cggacgcagt gtatataagt gaacttcacc attttcatat aacgcataat
    12121 gattttctcc agccagagaa gcttcatcca taaaaccagc gccatttaaa acaactgcgc
    12181 gttttcgtcc gagctggccg agtacttccg ctgtttgctc taacaaatca cgacgataaa
    12241 ttcccattaa ttgcgtttct aaatggaccg gatttgtgag tgggccaatc aaattaaata
    12301 tcgttggcgt tccaagttct tttcgaacat ccataacgta cttcatattc gggtgaacat
    12361 gtggcgcgaa caaaaaggca attccgactt tttcgagtaa ataagtcata tcttctgggc
    12421 gcatattaat atcaatccct aattcctgac aaacatcagc actacctgaa cgactagaaa
    12481 tacttctatt cccatgtttc gcaaccggaa tccccgcagc cgcaagaaca aaagccgacg
    12541 tagtactaat attaaaacta ttggatttat ctccacctgt tccgcaatta tccatcgctg
    12601 tcccggctgg aaaagcgact tgaatagcca ctcgttgcat cgcctgcgcg attcccgcca
    12661 tttcttctgc cgtttctcct ttcactttga gcgccattaa aaaagcagct attttcgttt
    12721 tcgaaagtcg tccttcaaaa atttctgttg caatcattgt catttcttct ttggataaat
    12781 tttcttggtc atatactttt tgtagtaaga tttccatttt ctcgcgcccc ttccactata
    12841 taaataaagt tttccatcat ttgttttcca tcattcgtac caattgattc aggatgaaat
    12901 tgcaaaccgt aaaccggata atcttttact ttcattgcca tcacttccgc atcgtccgtc
    12961 gctactgcta acacttccaa aacttgtggc aacgtgtttt tatctactat taaagaatga
    13021 taacgcatca caggcatttc ttccggtaaa ttagcaaaga ttgctccagc ggtttgccgc
    13081 atagtagaaa ctttcccgtg gcggattttc gccgctcttt ttacgtctcc gccgaatacc
    13141 tcaccaatcg cctgatgacc taaacaaatt ccaagcaaag gcttttcttt cgcaaatttt
    13201 gcaactactt cttctaaaag accagcatca cttggttttc ctggtcccgg tgaaagaact
    13261 atcccatcag ctaaagccgc tatttccatt aaatcagccg catcattccg tttcactacc
    13321 acttcactaa attctgctaa atactgttct aaattaaatg taaaagaatc gtaattatca
    13381 attaatagaa tcattctccc acctccaaaa gtgcctttgc tttttgtaat gtttctaagt
    13441 attcgctttc tggatcggaa tcatagacaa ttcctgcacc agcttgaaca taagcttttc
    13501 cgttatgaag taccattgtt ctaatcgaaa gcgcgaaatc cgaatcacca tttttagtta
    13561 aataaccaac cgcaccagca tatgggccac gttttacatt ttcccattca tagattcgct
    13621 ccatggctct tattttcggt gctccgctaa ctgtaccagc cggaagcgtc gaccgaagag
    13681 catccattgc agtaagtcca ggttttaagg ttccttctac tactgaaact aaatgcatta
    13741 agaaacggta tctttcaata gtaaggtaaa caggcacatg cactgatccc gtttcggcga
    13801 ttttcccaat atcatttcgc ccaagatcta ctaacatccg gtgctctgcc aattcttttt
    13861 catccgacaa caattccgaa gcgagtagtt cgtcttcttg tttcgttgcc ccgcgccgtc
    13921 ttgttcctgc aataggattc gtaattaccg tccgcccttt cgttttaatc aaactttctg
    13981 gcgaagagcc aattagcact gtatccccaa aatcaatgaa ataaagataa ggagaaggat
    14041 ttaataaacg taatttccga taataatcaa atggtgtcac ggtgaaatct gcttctagtc
    14101 gttgcgagag aacaatttga aagaagtcac cctcttggat ataggttttt gcttttttca
    14161 ctaaccccat gtactcctct ttcgtgtagt tactcttgta tgtcattttg ggaacatgga
    14221 cagccttgtg ctcttccttt ttcggcgttg taagttcagt aaacattaat tcaagcgcct
    14281 tatctagttc cgcctcactt cttcccgaat agcaattatc ttgcactaaa ataagttctt
    14341 ccgcctgatg atccataatc acaaaacttt catatacata aaaacgaata tctggcatat
    14401 cccgagtttc tactggaatt tcgcctaaat tctcataaag cgcaatgaca tcataaccaa
    14461 cataaccaat tgcacctgaa tcaagcggta aatctgcttc atcttctttt gctttttcga
    14521 taaataattc aatttctttt aaaggatctg cgacaacttg atgtataccg tcgatataat
    14581 aatcatgttg atatacttta atttcatgga ctggattaat agcaatgatc gaataacgtc
    14641 cagcctccgc atctttcgcc gccccctcta gcaaactttt tcctgtacct gaaagtcttt
    14701 gaaacgccag aatagccgtt agtgtgtcag catctatttt tttcgttttt ctcatcttaa
    14761 tcatcccttc ttctctacta aaataaaaaa aagtcctctg aaaaagcgca aaattatgct
    14821 ttttcagagg acgagttatc gcggtgccac ctcattttag ggaattctcc ctatctcagt
    14881 actgcaatat ttgcagtcgc tctataacgg gagcacccgt tcacccctac ttaatttcaa
    14941 ggtatcacgc acaaggccca ttcctaattc atctatttat tagctcccac caaacgctaa
    15001 ctctctttaa aaatcgatga aaaagtacta ttcttgtttc atgttttcgt tttataaaat
    15061 taaaaaaggg cctctctcca agcctagcaa atatactaga caaggacgag agacccgtgg
    15121 taccaccttg attaactgta aaaacagttc acttaatcca tccaaattcc gaatgggtgc
    15181 cttgtgtaac gataaggcct aatcgctgta tcctactaag aaaatccttt cagatcagag
    15241 ctcagaagtc cattcacatc atgtccgcta ctgactttca ccaaccgtca gctctctaaa
    15301 aactttcatc atgttactta ctcttcatca aagctatcat tttttacttg ttttcatctt
    15361 acataagaaa atcatgaaag tcaagaaaat aaaactactt tatactaaaa aggtcgcaaa
    15421 acgataatta ataaacaagt aagaaaaaag aactatctcc ctataatata tttcacccca
    15481 gaaaaagtat gctattttct
//
LOCUS       DABQVC010000053        15062 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.053,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000053 DABQVC010000000
VERSION     DABQVC010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15062
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.053"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..691)
                     /locus_tag="IBJ56_001173"
     CDS             complement(<1..691)
                     /locus_tag="IBJ56_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3417432.1"
                     /translation="MKLSNLKYFVDVAMEGSFTRASEKLFISQPTLSRRIKELETELG
                     VELFIRNRHSLELSSAGQQFLIEVNDILNRVNKLSHMFDNQKTADEAGQLLKMGYLSN
                     FNMNAMYELLESFKQSHPHVQFSLKPDTPMNLAEGLSNGQYDLVFNLSAYFQPNMSIE
                     EVLFIKNHLQIAIPADHRFRKKKKVYFNDLKQEIVILLERKQSPIIVDYVVSQCTKHG
                     FNLKANSYVKDL"
     gene            complement(766..2526)
                     /locus_tag="IBJ56_001174"
     CDS             complement(766..2526)
                     /locus_tag="IBJ56_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HAM3417433.1"
                     /translation="MTAKITEKMLFSPSFEYVDNGIEHGVLSPFETKEIILEKGQQIA
                     EGFKPLDCSIKMLKDVPVKMRDGITIYTDIYLPLTEEKVPTLIAWSPYGKSAGTAPRY
                     KNLFNMLGMGNAWNSGLTKFEAPDPAYWCAHGYAVCNPDMRGIAHSEGNTTMIGSQEA
                     EDGYDLIEWLAKQSWSNGKTALTGTSYLAFSQWYIAAEQPPHLTCINPTEGLADGYRD
                     LAFIGGIPDPNFIERLQINHVSAKNSQREDLTKEMEAYPLADSAIWKDKVADPSKITI
                     PAFVIASYSNTLHTMGTFRSWRSLGSKEKWLRIHDRQEWPYYYDENNVEELRRFFDYY
                     LLGKENNWTDTPTVRYALIDFQGGNQTDLPSEVFPPTNSENKRYYMNGLLRTLQETPT
                     SDDFKVSYTTENLPGRASFQMTFDKETHFVGYPKAKLFMEVDGYDDLDVFVWLQKLDK
                     FGNVLSEFVVPNHGAALQDFTQEGASALRYKGAWGRLRASMRQLDSQVSTDEIPAYSF
                     DKVEKLSSGEIVELDIILSPIGLTYKAGETLRVVVSSKDELGSVMPGTPGCTPNNKGM
                     HILHTSKEHPSYIQLPIINK"
     gene            2718..3311
                     /locus_tag="IBJ56_001175"
     CDS             2718..3311
                     /locus_tag="IBJ56_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HAM3417434.1"
                     /translation="MKKLLFLGDSVTDAGRDFENDRELGHGYVKIIADQLEQEDVTVI
                     NRGVSANRVADLHRRIEADAISLQPDVVTIMIGINDTWFSFSRWEDTSVTAFKEVYRV
                     ILNRIKTETNAELILMEPFVLPYPEDRKEWRGDLDPKIGAVRELAAEFGATLIPLDGL
                     MNALAIKHGPTFLAEDGVHPTKAGHEAIASTWLEFTK"
     gene            3497..4456
                     /locus_tag="IBJ56_001176"
     CDS             3497..4456
                     /locus_tag="IBJ56_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAM3417435.1"
                     /translation="MQKEKAPIGLYFLLIAVMASWGFNVTMTKVLVSYFPTVTMTSFR
                     IFTAAITVIIILFITKKLRLPTKWEFGLILLASIFNIVIHHFFLSNGLKLTTGTNAGL
                     ILGSAPIVVAIFSVVFLRERIGAWRALGFLAGIFGVSLVVLSNGTGISGISLGDIDIF
                     IAMASQAFSFIIIKKLAGSMDTGLMTGYMLFLGSVMLFGLSRFMEPDGMSELVAVHSW
                     KLWLLFVVSAVVATAFGNFVYNYAVGKIGPSRSAIFMNFNPLFSLIGALLFLGEAIKI
                     PQLVGFGFIIIGVLLGSGALMDLIYERKKTKVRDPEKLLEKEV"
     gene            4531..4755
                     /locus_tag="IBJ56_001177"
     CDS             4531..4755
                     /locus_tag="IBJ56_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HAM3417436.1"
                     /translation="MKLLLKNINDLAAKQKSEGLTAFEKERQAALRQEYLKKIRGTVQ
                     DNLHHVTIIDPLGDDVTPKKLKEIQAELRG"
     gene            4922..5371
                     /gene="rpiB"
                     /locus_tag="IBJ56_001178"
     CDS             4922..5371
                     /gene="rpiB"
                     /locus_tag="IBJ56_001178"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HAM3417437.1"
                     /translation="MEIAIAADHGGFQLKEKIRAHLIESGYTVKDFGCYSLESVDFPE
                     YAAKVGHFVATENSLGVLCCGTGIGMSMAANKIKGVRAAVVSDAFSAMMTRRHNNSNV
                     LCLGERVLGDSLALLLLDTWLAAEFEGGRHNTRLAKLAELEEPEEDK"
     gene            5368..6036
                     /locus_tag="IBJ56_001179"
     CDS             5368..6036
                     /locus_tag="IBJ56_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HAM3417438.1"
                     /translation="MKMIAASIMCADSLHLADELRALEQANVKMLHCDVMDGVFVENA
                     AMGAYVLQDIKNNTDMLLDIHLATVNPDRFVDLYAAIKPAYMSFHVEASPDVDATIKH
                     IRALGIKPSIAISPDTEIEQIYPFLDKVDMVLMMTVNPGFAGQKFQHHVLEKIKKLQR
                     ELESHTNKPLIEVDGNIFEETVRLLEPIGADVYVVGTAALFNDKAGSYTEKLAPLREI
                     IQER"
     gene            6043..6693
                     /locus_tag="IBJ56_001180"
     CDS             6043..6693
                     /locus_tag="IBJ56_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HAM3417439.1"
                     /translation="MHLDSANLEDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRI
                     LELTDKQVFVQTVGFSYEEILADARMLLAMFGKEKIAIKIPAHEAGINVIDTLKKEDK
                     TIQILGTAIYSADQAIAAALAGADFVAPYVNRMSAANIDPFKEIAGMRHFFDKKALKT
                     QIMAASFKHSGQVMQAYESGADTVTIPYEIYLQMTNKVLAVEAIRVFNKDATLYEK"
     gene            6802..8862
                     /locus_tag="IBJ56_001181"
     CDS             6802..8862
                     /locus_tag="IBJ56_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3417440.1"
                     /translation="MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVN
                     EWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLT
                     AKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKV
                     LTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYL
                     LSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLT
                     TNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIK
                     YQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQ
                     NDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFS
                     SIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKD
                     PNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPL
                     LLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYF
                     SETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKVMQTINQLVI
                     REDE"
     gene            8866..9468
                     /locus_tag="IBJ56_001182"
     CDS             8866..9468
                     /locus_tag="IBJ56_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HAM3417441.1"
                     /translation="MDKQAILDNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECT
                     GKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGG
                     NTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTM
                     AVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK"
     gene            9496..9963
                     /locus_tag="IBJ56_001183"
     CDS             9496..9963
                     /locus_tag="IBJ56_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3417442.1"
                     /translation="MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDA
                     VIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVR
                     IVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN"
     gene            9980..10378
                     /locus_tag="IBJ56_001184"
     CDS             9980..10378
                     /locus_tag="IBJ56_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417443.1"
                     /translation="MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMFVVMIYATTILY
                     AKWTLAYYLPKKMNQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNA
                     PESTKLLHFSQQKLKLSDKEKLQKIIEIQS"
     gene            10389..11039
                     /gene="rpe"
                     /locus_tag="IBJ56_001185"
     CDS             10389..11039
                     /gene="rpe"
                     /locus_tag="IBJ56_001185"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HAM3417444.1"
                     /translation="MAKIVPSVFGADIGRINEQLEVLEKNGIDLLHVDMMDGSFVPNI
                     AFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQL
                     IKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKA
                     YIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLSKGVLTE"
     gene            11036..12082
                     /locus_tag="IBJ56_001186"
     CDS             11036..12082
                     /locus_tag="IBJ56_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HAM3417445.1"
                     /translation="MKALKLYGKRDLRYEEADMPTIEQPDDVILKVKTVGICGSDISR
                     YSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFAR
                     CRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQA
                     GNDVVVVGSGNIGLLAIQWAKVFGAKRVIAIDVDDKKLALAKEVGADVVINSLKEDPL
                     EVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKI
                     VRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIY
                     ERNEFFGKVLFFPE"
     gene            12098..12391
                     /locus_tag="IBJ56_001187"
     CDS             12098..12391
                     /locus_tag="IBJ56_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417446.1"
                     /translation="MKKKKIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQE
                     VASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD"
     gene            12406..13677
                     /locus_tag="IBJ56_001188"
     CDS             12406..13677
                     /locus_tag="IBJ56_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HAM3417447.1"
                     /translation="MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLT
                     VGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVF
                     VAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAILSSIINMAIIF
                     KIADWTQKDVENVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQS
                     RLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVI
                     SEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPL
                     ADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIP
                     KDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL"
     gene            13817..14752
                     /locus_tag="IBJ56_001189"
     CDS             13817..14752
                     /locus_tag="IBJ56_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HAM3417448.1"
                     /translation="MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKIN
                     IEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKA
                     RSREPITAKLMANLIQRAGADRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENY
                     GEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVV
                     DDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDL
                     PEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF"
BASE COUNT         4786 a         2646 c         3172 g         4458 t
ORIGIN      
        1 ccagatcttt tacatacgaa ttcgctttta aattaaaacc atgtttagta cattgactaa
       61 caacatagtc tacaatgatg ggagactgtt ttctttcgag caaaataact atttcttgct
      121 tcaaatcatt aaaatatact tttttctttt tccggaatcg atggtccgcg ggtatagcaa
      181 tttgcaaatg attttttata aataatactt cttctataga catattcggc tggaaataag
      241 cggataaatt aaaaactaaa tcatattgcc cattagaaag accttcagct aaattcattg
      301 gtgtatccgg ttttaatgag aattgaacat gtggatgact ttgcttgaat gattcgagca
      361 gctcatacat tgcgttcata ttgaaattcg agagataacc catctttaat aattgtccag
      421 cttcatctgc tgttttttga ttatcaaaca tatgggatag cttgttgact cgatttaaaa
      481 tatcatttac ttctattaaa aattgttgac ctgcacttga taactccagc gaatgacgat
      541 tcctaataaa cagttctaca cctaattctg tttctaattc ttttattcgt ctactaaggg
      601 taggctgtga aataaataat ttttcagatg ctcgggtaaa acttccttcc atagccacat
      661 caacaaagta tttcaaattg gataacttca taattgctcc attcaatgaa agattgtaaa
      721 tagtagcttt agtataaagt tattagactc cattgacaag cttttctatt tgttgattat
      781 tggtagctga atataggatg ggtgctcttt actcgtatga aggatatgca tacctttatt
      841 attaggtgtg catccgggcg ttcctggcat tactgagcca agttcatctt tgctactcac
      901 gactactctg agtgtttcac ctgctttata agttagacca atgggactca aaataatgtc
      961 tagttctaca atttctccgg aagagagttt ttctactttg tcaaagctat aagcaggaat
     1021 ttcatctgtt gaaacttgag aatctagttg tcgcatggat gcgcgaagtc ttccccaagc
     1081 gcctttatag cgtaaagcag atgccccttc ttgtgtgaaa tcctgaagtg cggccccgtg
     1141 atttggtacg acaaattcac ttagtacgtt gccgaattta tctagctttt gaagccaaac
     1201 aaaaacatcc aagtcatcgt aaccatctac ttccataaat aattttgctt ttggataacc
     1261 aacaaaatgc gtttctttgt caaacgtcat ttggaacgat gctctccctg gcaagttttc
     1321 agtagtatag gatactttaa aatcatctga agtaggtgtt tcttgtaaag tacgtaatag
     1381 gccattcata taataacgtt tgttttcact attggtaggt ggaaaaactt cggatggtaa
     1441 gtcagtttga ttgccacctt gaaagtcaat taatgcatag cgcacagttg gtgtatctgt
     1501 ccaattattt tccttgccaa gtaaataata atcaaaaaag cgtcgcaatt cttctacgtt
     1561 attttcgtca tagtaatatg gccattcttg gcgatcatga atacgaagcc atttttcttt
     1621 agaaccaagt gaacgccaag aacgaaatgt acccattgtg tgaagcgtat tagaataact
     1681 tgcaataaca aaagctggta ttgtaatttt acttggatct gcaactttgt ctttccaaat
     1741 agcactatca gctaaaggat atgcttccat ttcctttgtt aaatcttctc tttgcgaatt
     1801 tttagcactg acatggttga tttgcaaacg ctcaataaaa ttaggatctg gaatgcctcc
     1861 aataaaagct aagtcacgat aaccatctgc taatccttca gtaggattga tacatgttag
     1921 gtgagggggc tgctcagctg caatatacca ctgggaaaag gctaaataag atgttcctgt
     1981 tagagctgtt tttccattac tccaagattg cttagctaac cattcaatta aatcatagcc
     2041 atcttcagct tcttgagagc caatcattgt agtattaccc tcactatgag caatgccacg
     2101 catgtcagga ttacagacag cgtatccatg tgcgcaccag tatgctggat caggtgcttc
     2161 aaatttagta aggccagaat tccaggcatt ccccattcct agcatattaa atagattttt
     2221 gtatcgagga gctgttccag cactttttcc ataagggctc caggcgataa gagtaggaac
     2281 tttttcttct gttaatggta aataaatatc ggtataaatg gttataccgt cacgcatctt
     2341 aactggtaca tcttttaaca ttttaatgga acaatccagt ggtttgaaac cttcagcaat
     2401 ttgttgtcct ttttctaaaa tgatttcttt tgtttcgaat ggacttagca ctccatgctc
     2461 gatgccatta tccacgtatt caaaagaagg gctgaaaagc attttttctg ttatttttgc
     2521 agtcatataa attacctccg attatttttt taataagttt taacactttt aagtataggt
     2581 agtatcgcga ggtctgtaca attgtaattt tggataatct ctcctaaaaa aataagctat
     2641 gcaaaaaatg aatacaacta aattgaagtt tttttgttat aataaggcat caggaatttt
     2701 aaaggagacg gaactaaatg aagaagttgc tttttttagg tgatagtgtg acagatgcgg
     2761 ggcgagattt tgaaaatgac cgcgaattag gacatggtta tgtgaaaata attgcagacc
     2821 agcttgagca agaagatgta acggttataa atcgtggcgt tagtgcgaac cgtgtggcgg
     2881 atttgcatcg tcgtattgag gcggatgcaa tttcacttca accagatgta gttacgatta
     2941 tgattgggat aaatgatacg tggtttagtt ttagcagatg ggaagatact tcggtgacgg
     3001 cgtttaaaga agtgtatcgt gtgattttga atcggattaa aacagaaaca aatgcggaac
     3061 tcattttgat ggagccgttt gtattaccat atccggaaga tcggaaagag tggcgtggtg
     3121 atttggatcc aaaaattgga gctgtgcgcg aacttgcggc agaatttggt gcaacgctta
     3181 ttccgcttga tgggctaatg aacgccctcg ctatcaaaca tgggccgacc tttttagctg
     3241 aggacggggt gcacccgacc aaagcaggac atgaagcaat tgcctctact tggttagaat
     3301 ttacaaagta acgctttaca gaaaaaatta tccatgctat agttgggtct atgcgatgag
     3361 cctacaagca gtgacttaag tatcactgcc ccattttccg cgttatagct ttgtggaagg
     3421 ctgcggaaga tgacgctatg aaatgcccct taaagtaatt taaggggcat ttttctataa
     3481 aaaaggagtg tttgttttgc agaaagagaa agcaccgata ggactttatt ttttattaat
     3541 tgcagtgatg gcgagttggg gttttaatgt cacgatgacg aaagtattag ttagctattt
     3601 tccgactgtt acgatgacat cttttcgaat tttcaccgca gctataaccg ttattattat
     3661 tttatttatc acaaaaaaat tacgtctgcc tacaaaatgg gaatttggtt taattttact
     3721 cgcgagtatt tttaatattg ttattcatca ttttttcttg tcgaacgggt tgaagctgac
     3781 gactgggacg aatgctgggc ttattcttgg ttctgcgccg attgtggtgg cgattttttc
     3841 tgtggttttt ctccgtgaac gaattggagc ttggcgtgcg ctcggctttt tagcagggat
     3901 ttttggcgtg agtttggttg ttctttctaa tgggacgggg ataagcggga tttcactggg
     3961 agatatcgac atctttatcg cgatggcttc tcaggcattt agttttatta ttattaaaaa
     4021 gctcgctgga tcaatggaca cggggctgat gactggatat atgctatttc ttggttcggt
     4081 tatgttgttt ggtttaagtc gcttcatgga gccggatggc atgtcagaat tagtggcggt
     4141 tcattcatgg aaactgtggc tcttgtttgt tgtttcagct gtagttgcaa cggcatttgg
     4201 caatttcgtt tataattatg cggttgggaa aattgggccg tcacgctcgg ctatttttat
     4261 gaatttcaat ccattatttt cactaattgg cgcattactt ttccttggag aagcaattaa
     4321 aatcccccag ctagttggct tcggttttat tattattggc gtcctacttg gttcgggcgc
     4381 attaatggat cttatttatg aacgcaaaaa aacaaaagta cgcgatcctg aaaagctgct
     4441 cgaaaaagaa gtttgacttt tattgacctt tatattataa tttggttagt tacttattaa
     4501 aagtaactag ataatgatag gagggatagc atgaaattgt tattaaaaaa tattaatgat
     4561 cttgctgcaa aacaaaaaag tgaaggatta actgcttttg aaaaagaaag acaagctgcc
     4621 cttcgtcaag aatatttgaa aaaaattcga ggaactgttc aagacaactt acatcacgta
     4681 acaatcattg atccacttgg agacgacgta actcctaaaa aactaaaaga aatccaagcc
     4741 gaattaagag gctgatataa gtcatagaag gttgaaagag ctcattgctt tttcagcctt
     4801 tttttgttga tagagctaat ttaccatctt gcggattcga gtagagaaaa atggtgacga
     4861 acagttctaa cagtttgagg aaggccggtg ctacaatcaa ggtgataaag gagaggataa
     4921 catggaaatt gcaattgcag ctgaccatgg cggatttcag ttgaaagaaa aaatccgcgc
     4981 gcatttaatt gaaagcggct acacagtaaa agattttggt tgttattcat tagaaagcgt
     5041 ggattttcca gagtatgccg ctaaagtagg acactttgtt gcaaccgaaa acagtttagg
     5101 tgtgctctgt tgcggaacag ggattggaat gtctatggca gccaacaaaa taaaaggtgt
     5161 tcgtgctgct gttgtttcag atgctttttc agcaatgatg acgaggcgac ataataatag
     5221 taatgttctt tgtcttggtg aacgtgttct gggcgatagt ctggcgttac tcttacttga
     5281 tacgtggctt gcggcagaat ttgaaggtgg aagacataat acaaggctcg cgaaattggc
     5341 ggagcttgag gaaccggagg aagataaatg aaaatgattg cggcttccat tatgtgtgca
     5401 gactcgcttc atctcgctga cgaacttcgc gcactcgaac aagcaaatgt aaaaatgctc
     5461 cattgtgatg tgatggatgg tgtttttgta gaaaatgcag caatgggcgc ctatgtcctt
     5521 caagatataa aaaacaatac agatatgcta ctagatatcc acttagctac agtgaaccct
     5581 gatagatttg tggatttgta tgcggcgata aagccggctt atatgtcttt ccacgtagaa
     5641 gcttcacctg atgtcgatgc gactataaag catattcgtg cgctaggaat caaaccgtcc
     5701 atcgccatca gcccggatac agagattgaa cagatttatc catttttaga taaagtcgat
     5761 atggttttaa tgatgaccgt taacccagga ttcgccggac aaaaatttca gcatcatgtc
     5821 ctagaaaaaa tcaagaaact tcaaagagag cttgaaagtc acaccaataa accattaatt
     5881 gaagtagacg gtaatatttt tgaagaaaca gttcggttgc ttgaaccaat tggcgcagat
     5941 gtctatgtcg ttggaacagc cgcattattt aacgacaagg caggtagtta tacagaaaaa
     6001 ttggcgccac tcagagaaat tatccaagaa aggtgaggga aaatgcattt agattcagct
     6061 aatttagaag acgtgaaaaa aattcaagcc agctccattt ttaaaggaat tacaacgaac
     6121 ccaaccattt tagtaaaaga aaaatgcaat cgacaaacag cgattaatcg tattttagaa
     6181 cttacggata aacaagtttt tgtacaaaca gttggtttta gctatgagga aattttggca
     6241 gatgcgcgca tgttactagc gatgtttggg aaagaaaaaa tagctattaa gattccggca
     6301 catgaggctg gtattaacgt gatcgataca ctcaaaaaag aggataaaac cattcaaatc
     6361 ttagggactg ctatttattc ggctgatcaa gcaatcgcgg ctgccttggc tggtgcagat
     6421 tttgttgccc catatgtgaa taggatgagc gcagcgaaca tcgatccttt taaagaaatt
     6481 gctgggatgc gtcacttttt tgataaaaag gcacttaaaa cacaaattat ggcagcgagc
     6541 tttaaacata gtgggcaagt aatgcaagcc tacgaaagtg gcgcagatac ggtaactatt
     6601 ccttatgaaa tttatttgca aatgaccaat aaagttttag cagtagaagc aattcgtgtc
     6661 tttaataaag atgctacatt gtacgaaaag taacaatctc cttctcatgt tgtggaagtg
     6721 tgtggagaaa acttgtgatg aaagcgcatt cttaagcgcc aaaccctatg ctataattag
     6781 gctatcaaag gggggagacg catgtatctg gataacagaa gtaaaacact atttcaagaa
     6841 gttataaaaa atccgaacat tacaaataaa caactcgaag taaagtataa attatcgcgt
     6901 taccaaatca gctatagttt tcagaaagta aacgaatggc tcaagtggaa aaattatcca
     6961 gaagtaaagc gttccaaaaa cggccgattt atattagaac ccgagcttac agcgctattt
     7021 tctgagaaag aaactcgaga tccgagcgta gaatacttac cttctgaaaa tgaacgtgcc
     7081 aatttaattt tgctaatgct tttaacagca aaagaagaac tatccctcgc ccattttaca
     7141 acgaagattc aagtaagcaa aaacaccatt cttcgtgatt taaaagtagc gcaaaaatta
     7201 cttcctaaag aaacaactgt cacttatagt agagcatcgg gttatcagtt agcagggagt
     7261 gaatgggaac ttcgcaaggt tctgacacaa gttgtaagta gtgtgaaaga gatgttccga
     7321 ggagagcact atttcctatc gtattcagga attgaaaaag tccaactaat ggaaattcgc
     7381 cgcacactcg aagaagcaga agcgatgatg caaataaaat tcacctatga gcaaatcgaa
     7441 ttattaccct atttgctatc cgtgatgttc ttaagaatca gagaccggcg cttaatcgac
     7501 actgcttttc atattgacga gaaatcactt tcagacacgc gagaatacca catcaccgat
     7561 attttgctcg aaaaaactgg cccagttcca gaacaagagc gacttttcat cacattacaa
     7621 cttcttacaa caaacatttt ttccggcgaa attttaactg aaaaattaac agaagacttg
     7681 gaaaaagttg tcctcacatg cttagactta ttcgagaaaa aagcacttgt ttctcttaaa
     7741 aacaaacata tcttaatcga aaaattactc ttacatttaa aaccagccta ttaccggatt
     7801 aaataccaaa tgaatttaga agatacgctt tatgaaaaat tcaaccaaga attcgaagcg
     7861 ttaaacttca ttgtgaaaga agcatttgac ccacttgcga aatttattgg tcgcgaaatt
     7921 ccagccggcg aaattttctt catttctttg tttattggga gcgacatgat accgcaaaac
     7981 gatatttatc ataaacaaaa acgtgcgatt gtgctttgtc cgagcggggt tactttttca
     8041 aaaatcatgg aaaatatttt agtgaaacta ttcccggaaa tccattttta tccaactata
     8101 tctgttcggg aatatgcctt ttttaaagca gaagttgata ttgttttttc atccattccg
     8161 ttaaaagatg gcgaaaatgt ctttgttgtt cagccattta tgaatgatat cgaaaaaacg
     8221 caactgcggc aacacgtctt gcaaaattta tttggaatgg gaaaccagct cacgagtatt
     8281 gataaaatca tggaagtagt ggaacgtaac gccgatataa aggatccgaa tgcaatacga
     8341 gatggaatta ttgatatttt gtcggctaac acagctacag atgaaaataa acgcgtgaaa
     8401 aaagtctatt tacatgattt aatcaccgaa gataacatca tgatttgtga ggatgttaaa
     8461 aactatcaag aagcgattcg tctagcaagt cagccgctgt tactacaaca agcaattaca
     8521 gcaaactatg taaagaccat gattgataac cataagttcc acgatccgta cattattatc
     8581 ggtgaagata ttgccattcc acacgctatg cctaatgcag gggtgaatcg actcgctatg
     8641 tctcttttag tcgtgaaaaa tggcgtatat ttttcagaaa cagagcaagt tcatttcgta
     8701 atagttatcg caccagtgga taaagagcaa cacattgaag cactttacca aatcgttcat
     8761 ttagccgaaa atcaccaaat tttagacgat ttgctcgaaa atgtaaccaa agaaaaagtc
     8821 atgcaaacta tcaaccaatt agtaattaga gaggatgaat aaattttgga taaacaagct
     8881 attttagata atattcacca aacatggcaa gaagaagcaa acgcgatttc ccgtttgccg
     8941 gaagtaacaa gtgaagaggc tctcgttaaa acggttgaaa aaatcgccga gtgcactggg
     9001 aaaattgtcg tagctggttg tggaacatcc ggcgtcgctg cgaaaaaatt agtacactct
     9061 ttcaactgta tcgaacgtcc agcagtcttt ttaaccccat cagatgctgt gcatggaact
     9121 ctcggtgtac ttcaaaaaga agatatattg attctcattt caaaaggtgg aaatacaggc
     9181 gaattactta atttaattcc tgcttgtaaa acaaaaggaa gcacactgat tggtgtaaca
     9241 gaaaacccag attccgttat cgccaaagaa gcagatatct ttttcccagt gagtgtaagc
     9301 aaagaaccag atccgtttaa tatgttagca acggcaagta caatggctgt tattgcaagt
     9361 tttgatgcag ttattgtttg cttaatgacc tatatgaatt atacaaaaga gcagttttcc
     9421 gtcatccatc ctggtggtgc cgttggaaac aaattattaa ataaataaac aagcagccag
     9481 tcggagggat gcaatttgga tgtattagaa tattttaaag aagaaatggt tcgattttca
     9541 aacgaacaag ataaagaaaa attacttaca gaaatggcgg aacagttgtg tgaagtgggc
     9601 gcagtaaagc caagctataa agatgcagta attaaacggg aaaaagtttt tccaaccgga
     9661 ttactaaccg cgcacgccgg ggttgccatt ccacatacag atagcgaaca tgttattcgg
     9721 ccagtggtgg ctgtacgaat actcaagaag cccgtttcat ttattgaaat ggcctctgat
     9781 aacgaagcaa tcgatgtcag aattgtcttt atgatggcgc taaggagtgc cgatgaacaa
     9841 ctagatatgc tgcaaacact tattcaactt attcaagacg aggaggtgat gacgacctta
     9901 cttaaagcgc aagagacggg agatgttctt tccgcaatag aacatttttc taagaataat
     9961 taagggaggt cgggaataga tggggagttt ttttgcaagt tttgtagact ggctaatagg
    10021 aagtccaggt agatttgtcg ttaacttaat tgaagataat atgttaattt tcatgttcgt
    10081 agtaatgatt tacgccacca ccattttata cgccaagtgg acactcgcat actacttacc
    10141 gaaaaaaatg aatcagttag cagaaatgaa aacgtgggag ctggacgaat tatatgcagc
    10201 gtggcaaaca gagaaaaaag ctctaccgtg gtacattctc gtgccaagcc gaaatgaatt
    10261 ttgggtaaaa tcagcccgaa atgcaccaga atcaactaaa ttactccatt ttagtcaaca
    10321 aaaattaaaa ctaagtgaca aagaaaagtt acaaaaaatc atagaaattc aatcttgagg
    10381 tgataatagt ggcaaaaata gttccgtctg tttttggagc agacatcggc agaattaatg
    10441 aacagttaga ggttctagag aaaaatggca ttgatttatt acatgtggat atgatggatg
    10501 gctcgttcgt cccgaacatt gcttttggtc cagatcaaat caaaatgatg aaaaaaggca
    10561 cgaagcttca atttgatgtt catatgatgg tgtatgaacc agaccgttat attccaagat
    10621 tagtggaagc aggcgcacat atgattacag tccaccaaga agcaacaact catttgcatc
    10681 gtacaattca actaattaaa agttacggag ttcgcgcggg agtggtatta aatcctggta
    10741 caccaccaag cactttggaa tacgtgttag atgatattga ctgtattttg cttatgactg
    10801 taaatccagg cttaggtggt caaaaattct tccaatcaag tttagaaaaa atcagaaaaa
    10861 ccaaagcata tattggaaat cgtcctattc aaattgaagt agatggcgga gtaaatgctg
    10921 aactcgcgaa agaatgcaca cttgcaggcg cggatttaat cgttgtagga tcttacttat
    10981 ttgaaggaga tatcgaagcg aatttggaga agttatcgaa aggagtttta acagaatgaa
    11041 agctttaaaa ttatatggaa aaagagattt gcgttatgaa gaagcggata tgccaacaat
    11101 cgaacagcca gatgatgtga ttttgaaagt gaaaacggtt gggatttgcg gatctgatat
    11161 ttcgagatac agtaaacttg gtccgtatgt accaggaatg gtgtggggac atgaattttc
    11221 aggagaagtg attgaggttg gtagtgaggt tacagatatt gagattggtg atagggctgc
    11281 cggatgccca gcactctatt gcggagagtg tgaatactgt aaaaaaggcg aattcgcccg
    11341 ctgtcggaag ctaacagtaa tcggagcaag acatcccgga gcctatgctg agtatatcaa
    11401 acttccagca gaaaatgtag taaaaatacc agacgaatta gattatgaag ctgctgcact
    11461 tgtcgagcct tccgcagtgg tcgttcatgg gttttatcat acgaaattac aagcaggcaa
    11521 tgatgtcgtc gttgtcggaa gcggcaatat aggtttgcta gcaattcaat gggcaaaagt
    11581 ttttggcgca aaaagagtta ttgcaattga tgtagacgat aaaaagttag ctcttgcaaa
    11641 agaagtagga gcagacgtcg ttattaattc tttaaaagaa gatccattag aagtagtcgc
    11701 agcacataca gatggtctaa acgctgattt agttgtagaa gctgcgggat cacctattac
    11761 atctgcccaa gtttttgcct atgcgaaaaa aggtggaggc gtcgttttcc tagggattcc
    11821 atacgccgat gtaacaatcg aacgtttcta ttttgaaaaa attgttcgga gtgagcttac
    11881 tgtttggggc tcatggaatg caatttctgc accatttcca ggaaaagaat ggcaaacaac
    11941 cattcacttc ctagccaata aacaaatcaa cattgaacca atgattacac atcgtctttc
    12001 acttgctgaa ggaccagaag tttttgagcg aatctatgaa agaaatgaat ttttcgggaa
    12061 agtattattt ttcccagaat aataggggga ttttaggatg aaaaagaaga aaatttatgt
    12121 ttgttgtggg actggaattg caacttccac tgttatttcc aaaaaagtgc gtgcggtact
    12181 agacgaaaag cgcattccat atgaaattag tcaatgtacg gttcaagaag tagcgtcaaa
    12241 agtaagcaca tctaagccag acattattgt tagttcaaca acagttacag gtgatgttgg
    12301 tgatgtacca gttgtcattg gaagatcatt tttaacaggc ctaaaaaaac aagaaacaat
    12361 cgatgaaata ctcgcgatac ttcaagatta aagggagggc acaaaatgga tattattcta
    12421 gatttcttta aatatattat cgggcttggt gtaacagtta tgatgccgat tatcattacc
    12481 attctaggtg tgattttccg caaaaaaatt agtgtagctt ttaaagcggg gctaacagtt
    12541 ggtgttgggt ttgttggact aggcgttatc acttcactca tgttaacgac tattacacca
    12601 gttacaaaag cacttgtaga aaattataat tttaaattaa ccgcaacgga tatcggttgg
    12661 ggagttgggt catcactcgc atggggaaca gaagtcgtac catttgtttt cgtcgcaatt
    12721 attgcaacca atattttaat gattgccttt aaatggacga aaacaatgga cgtagatatt
    12781 tggaattact ggcaaccact tttcatcgcc agtgcacttt acttaacaac aggaagcatg
    12841 attattgcga ttcttagttc gattatcaat atggcaatta tcttcaaaat cgctgactgg
    12901 acacaaaaag atgtggagaa tgttttagga ttagagggga tttctttacc acaaattcaa
    12961 actaccgggt gggcgcttgt tggttatcca atgaactggc tactcggaaa aattcccggc
    13021 gttagaaaaa ttaattggtc cacagagaaa gtgcaatcac gtttaggtat tttcggcgaa
    13081 ccgatgctta tgggcttaat tattggtggt ggacttgctg ccattgctca aatgccgctg
    13141 agccaagtac tgcaaactgg agtaacgatt gccgctagtt tagtacttat tccgcggatg
    13201 gtttcccttc taatggacgg tcttacggtt atctcggaag ctgctcatga attcatggaa
    13261 aaacgtttcc caggtcgcga actatttatc ggactagatt cagcggtggg gattggtcat
    13321 ccatttgtgc tttcgcttgg cttactcatg attccgatta ctttgatttt agcgttcatt
    13381 ttgccaggaa ataaagtatt acctttagct gatttaacgg cgcttccatt ctacatgatt
    13441 tttgctattg ttccatccaa agggaattta tttagaggga ttttcacagg tattgttatc
    13501 gtcattatca ccctctacct atcaggagca gcggcacctt taatgacaga acttgcaggt
    13561 caaattggtt ataatatacc gaaagacgct gtagaagtaa cctctctagc agttgggact
    13621 cagtggtata cgtggattgt atattacggc cttcattggt tcggaggtat tctataattg
    13681 caatttaatg aaacaagcat tagtttgcgc taatgcttgt tttatttgga ccaatgattt
    13741 ttagctagta gacaacacat tgacagttct atataataat aaggagaaga aattagtacg
    13801 gcggaaggag atagcaatgg caggcaaaat gaaacttttt tctgtgacga gtgagagacc
    13861 acttgcgaca aaaattgcag attatctaga tataccttta tgtgaggtgg agctccagaa
    13921 gttcagtgat ggagaagtga aaattaatat tgaggaaagt atccgtggaa cgaatgcgta
    13981 tgttgtgcaa tcaatgaatt ccaacgtaaa cgaacgtcta atggaacttt taatcatggt
    14041 agatgcctta aaacgcgctt ccgtgcattc catcaatata attatgcctt attatggcta
    14101 tgctcgtcag gacagaaaag ctcgctcaag agaaccaatt accgccaaat taatggcaaa
    14161 tctaattcaa agagctggag ccgaccgttt aatcacagta gatttacacg cagctcaaat
    14221 tcaaggcttt ttcaacattc caatcgatca tctttcagca attccgctaa ttggtgatta
    14281 tttgatagaa aattacggtg aaaaagacgt ggtagttgtc gcgccggatc acagtggcgt
    14341 agttcgcgca cgcagaatcg cggaccgact aaacgcgcca atcgccattt taaaccgtaa
    14401 accaagacca catgaagacg aaattatgag tgtcattggc gatgtgaaag gcaaagtcgc
    14461 aatcgttgtc gatgatatta tcgataccgg cgtccgtgcc actacttcag ctgatatttt
    14521 acttgaaaaa ggtgccgtag aagttatcgc ttgcgcaacc cactccgtca tggcaggaaa
    14581 tgcaaccgaa cgcttacaaa attccaatat caaagaagtc atcacatcgg actccatcga
    14641 tcttccagaa gataaacaat tcgacaaact aacaaccatc tccatcggac gaatcttagg
    14701 ccgcgcaatc gaaggcgtac aagaaaaccg ctcgttgcat ccgttgtttt aaagaataag
    14761 caaaaaacag taacttagta gagttgctgt ttttttgtta tctgtcgacc ttgagtagcg
    14821 tgaaaaacac cgggaatcgt cagaaatagc tctttgaggt aagatgggag taagaagaaa
    14881 agttagcggg ttttagctac ttattttgaa atgtaaatgg actcctcagt catgatgatg
    14941 ggattacctt tgaaagtttt agttacttaa tgtgaaatat aaatttggtt cctttggaaa
    15001 acaacaatag cgtgtagtat tgtttactta ctcattgtga attgtaaatg cagaagcagc
    15061 aa
//
LOCUS       DABQVC010000054        14820 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.054,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000054 DABQVC010000000
VERSION     DABQVC010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14820
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.054"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            38..2551
                     /gene="secA"
                     /locus_tag="IBJ56_001190"
     CDS             38..2551
                     /gene="secA"
                     /locus_tag="IBJ56_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HAM3417449.1"
                     /translation="MAGLLKKIFESGKKDVKYLERKADEIIALADETAALSDDALREK
                     TVEFKERVQKGETLDDLLVEAFAVAREGAKRALGLYPFKVQLMGGIVLHEGNIAEMKT
                     GEGKTLTATLPVYLNALSGEGVHVVTVNEYLAHRDAEEMGVLYNFLGLSVGLNLNALS
                     STEKREAYACDITYSTNNELGFDYLRDNMVVYKEEMVQRPLAFAVIDEVDSILVDEAR
                     TPLIISGEAEKSTILYVRANTFVRTLTEEEDYTVDIKTKSVQLTEDGMTKGENYFDVE
                     NLFDLENTVILHHIAQALKANYTMSLDVDYVVQDDEVLIVDQFTGRIMKGRRFSEGLH
                     QALEAKEGVTIQNESKTMATITFQNYFRMYKKLAGMTGTAKTEEEEFRDIYNMRVIEI
                     PTNKVIIRDDRPDLIYTTIEAKFNAVVEDIAERHAKGQPVLVGTVAIETSELISSKLK
                     RKGIKHDVLNAKQHEREADIIKHAGERGAVVIATNMAGRGTDIKLGEGTIEAGGLAVI
                     GTERHESRRIDNQLRGRSGRQGDPGVTQFYLSMEDELMRRFGSDNMKSMMERFGMAED
                     AIQSKMVSRAVESAQRRVEGNNFDSRKQVLQYDDVLRQQREVIYKQRYEVINAENSLR
                     EIIEQMIQRTVNFIVSSNASSHEPEEAWNLQGIIDYVDANLLPEGTITLEDLQNRTSE
                     DIQNLILDKIKAAYDEKETLLPPEEFNEFEKVVLLRVVDTKWVDHIDAMDHLRDGIHL
                     RAYGQIDPLREYQSEGFEMFEAMVSSIDEDVSRYIMKAEIRQNLEREQVAKGEAINPA
                     EGKPEAKRQPIRKDQHIGRNDPCPCGSGKKYKNCHGKEA"
     gene            2636..3737
                     /gene="prfB"
                     /locus_tag="IBJ56_001191"
     CDS             join(2636..2707,2709..3737)
                     /gene="prfB"
                     /locus_tag="IBJ56_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010959056.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HAM3417450.1"
                     /translation="MELAEIRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPN
                     FWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQEELEKDI
                     KAYMATISEFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGF
                     KVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVS
                     VDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSE
                     RSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVK
                     DHRTNYETGNIQAVMDGDLDEFINAYLRSRIG"
     gene            3743..4606
                     /locus_tag="IBJ56_001192"
     CDS             3743..4606
                     /locus_tag="IBJ56_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HAM3417451.1"
                     /translation="MANKRKKQPLSPVVSKLIEYIYVIIGAALIALAFNVLLLPNHVA
                     SGGVSGISTIINYLTGWNPAFIQWAFNIPLFLAGLFFLGYQFGLKTFVGTMLLPFFVY
                     LTQGLEPWTHEPLVAALFGGVLVGMGLGIVFRGKASTGGTDVAAQILHKYSHLTLGIC
                     VALIDGFVVISAMFVFDIESGLYALVGLFATSKTIDLVQVGLNQSKTVFIISENQEAI
                     RQAILFKIDRGITRLSAKGGYTEDDKQILLCVIAQSEFSRLKEVIKEIDPEAFVVVMS
                     ASEVMGEGFTS"
     gene            5113..5799
                     /gene="ftsE"
                     /locus_tag="IBJ56_001193"
     CDS             5113..5799
                     /gene="ftsE"
                     /locus_tag="IBJ56_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HAM3417452.1"
                     /translation="MILMEDVYKKYPNGITAANGLNINIGEGEFVYVVGPSGAGKSTF
                     IKMIYREERATKGKIIVDKFDLINMKNREIPYLRRNVGVVFQDYKLLQSKTVYENIAY
                     AMEVVETEPSVIKERVMEVLDLVNLKHKVRMLPDELSGGEQQRISIARSIANMPKVLI
                     ADEPTGNLDPDTSWEIMNILEEISNRGTTIVMATHNKEIVNTLKHRVVAIENGRIVRD
                     EQQGEYGYEI"
     gene            5789..6673
                     /locus_tag="IBJ56_001194"
     CDS             5789..6673
                     /locus_tag="IBJ56_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3417453.1"
                     /translation="MKFRTVGRHIRESFKSLYRNGWMTFAAASAVTVTLILVSVFFAI
                     LINMNKLATDVENNVQINVHISLSADKKQQQELEKNIEKIDGVDSVSFSSKDDELKKL
                     VGAYGKNFELFKQDNPLYDVFVVEAKEPTQTKTIAKKVEKLQYVDNVEYGEKTVDKLF
                     DTLKWGRYAGIILSIGLLLTAMFLISNTIKIAIFSRRREIEIMKLVGATNWFIRWPFV
                     LEGAWLGLIGSIVPVVLTFIGYVNIYNLVNPKLVTSSLSLLPPTPFAYQISGLIIAIG
                     VLIGIWGSVISIRRFLKV"
     gene            6749..7954
                     /locus_tag="IBJ56_001195"
     CDS             6749..7954
                     /locus_tag="IBJ56_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase P60"
                     /protein_id="HAM3417454.1"
                     /translation="MKKNTFIAISLAAVISLTPAFTTNVFADVNTDIQNQDKKINDIK
                     SKKTDLQSDLSGLVADLEKAQEKAKSLQGEFDKTGKELKKLNEDIKSINERIKERETV
                     LKERARAMQKTSNSNAYLEVILDAENLSDLVGRVSAVNQLVDSDKSILEDQQNDEKAL
                     KTKQTAVKKKQEDQATAIHEYEAQQNKIEAQKAEKEAIVAQLASDQASAENAKAGLVS
                     ERDKAAKEATARATALREATSSNVGQESSSSATSTSSGKSNTTKNVASNDNNSAPSAA
                     TPSSGGYSAMIAAANAQLGKPYSLGATGPSAFDCSGFTSYAFRAAGVSLPRTSGGQYA
                     AASKISASQAKPGDLVFFNYGSGIAHVGIYVGGGQMINAQNNGVKYDNITSGYWAKYL
                     VGYGRVANF"
     gene            8074..9384
                     /locus_tag="IBJ56_001196"
     CDS             8074..9384
                     /locus_tag="IBJ56_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HAM3417455.1"
                     /translation="MLKKYGVVTILSLLVISAPLTGAHADTINDMQKRQNEIEQKKSE
                     LDKNIDSKNSELNHLESAEKDAAKELESLMKSLDATNKKLKEQEDKVSSENEKLKKLQ
                     KEMEKLRNDIRDRQKVLDNRARAIQTTGTATSYLDMIFEADDFKELVDRVTVVSAIVK
                     ADQNIMQDQKDDQDKLKVAESASQKKLENLKVLAVELEVSKNNMESQKQEKNDLVMAL
                     ANKKDLTKSEQTLLASEQGALTDEEKRLASNIAGEKAKQEAAIKAAEEKRMQEAAAAS
                     AKSSSVVKQQPSSDSSGATETVSSGGGQFIKPASGILTSGFSERTNPVTGKYESHKGQ
                     DIAGGGTVTVSAAASGTVVFSGFGASGSGFGGYGYVVKIDHGNGFQTLYGHMRAGSLK
                     VVTGQQVSQGQPIGIMGSTGQSTGQHLHFEIHKNGIPVDPAPYI"
     gene            9508..10956
                     /gene="cls"
                     /locus_tag="IBJ56_001197"
     CDS             9508..10956
                     /gene="cls"
                     /locus_tag="IBJ56_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HAM3417456.1"
                     /translation="MGLLAYLLVILLILNVFFAAVTVFLERRDTSATWAWLLVLTFVP
                     IFGFIIYLIFGRKLSGKKIFDWKGQEKIGIQESTANQIEMIRQKEFPFSDPNVKKHRD
                     LIYLLLVNDGAILTQDNEVELFVDGHEKFDALIADIEKAKDHIHLIYYIFHSDELGNR
                     LMRVLERKAAEGLNVKIIYDAMGSRTTKKSFFRTFQKNGGLVRPFFPSKLPLINFRLN
                     YRNHRKLAIIDGDVGYIGGFNIGDEYLGASKKFGYWRDTHLRVHGKAVYAMQTRFIMD
                     WNSASSTHKIDYKARYFPTFHGKGHTSMQIVSSGPDSEWQQIKNGYIKMINAAKKTIY
                     LQSPYFIPDASLLEAIKIAALSGVDVRVMIPNKPDHAFVYRATTNYAGELMETGAKIF
                     IYDNGFIHAKTLVVDGEIASVGTANMDFRSFRLNFEVNAFIYEKQMVQKLEDAFLEDI
                     LKSYQLTPELYAKRSLWIKFKEAVSRLLSPIL"
     gene            10984..12159
                     /locus_tag="IBJ56_001198"
     CDS             10984..12159
                     /locus_tag="IBJ56_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HAM3417457.1"
                     /translation="MDVFVEILNGIGRLLLQPALYVGILLAILAGFNRVRWERKSFSI
                     SIYSPWLELKSFFGVSLLFGLAISVVTSLIGFGVMIEWVAIFNVVACFLLIVGMFRLS
                     STAFTIGITSLIFYFCYYFDVSLAPFTNEAFTYDSIFIDNFMISMTFLLAVLLFVEAF
                     LIQYTSAKNPSPSLRKSKRGKLIGSFQLRKLWFVPIVMFLPGDVFTKIFEWWPVFAIG
                     SQSYSLIILPLFIGFQQQVQTQLPEEASRKIAVEVTTLATIIAVAGLLGIVMPVLTLF
                     AFMFAVIGRFWISYRHYRSEKLAPKKFGPQPDGLVVLGARAATPSARLNLKAGEKITE
                     VNSRPVRTREELYEALNLNRAFCKLKVIDNAGEPRFEQTALYENESFELGLLLVEPR"
     gene            12310..13020
                     /locus_tag="IBJ56_001199"
     CDS             12310..13020
                     /locus_tag="IBJ56_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3417458.1"
                     /translation="MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSE
                     KPDLIVLDLMLPEMDGIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTK
                     PFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLD
                     LTPKEFELLLFLANHRGKVFSRDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQ
                     PKYIKTIRGFGYKMENVK"
     gene            13020..14795
                     /locus_tag="IBJ56_001200"
     CDS             13020..14795
                     /locus_tag="IBJ56_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     WalK"
                     /protein_id="HAM3417459.1"
                     /translation="MKKLWLKIGLSFFILFFVVMVIVGVFSGELMKSTYLNMKENQLE
                     DDAKILLQTTNMENLDLDKDAATIQKSLDPLGEDIDARITVIDSKGDVVADTKKDPEK
                     LDNHMNRPEVTDILKKGESVGISIRESDSLGYSMLYVAVPVKHQGKTDGVLRISISLE
                     SVDAAVAKLWGNLALIFGIALVIIAAISVFIARKITRPVREIIEVSTDLANHKYDSRI
                     HGKISGELQDLSISVNTLAESLETQMFEIKQNEQRLNAIVQNLVSGVMLINVDKQVIM
                     TNRTMYQILGETEITGKPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDA
                     SVSPILGENGEITGIILLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLL
                     DGAMYDEVLLKKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQS
                     ARTIFEMATEKNIRVTIPEKTSASVMIETDRDKLQQIVINLLSNAINYTPVDGKVEVK
                     LIEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVEN
                     CGGRIEVESQEEVGSTFRVTLPKKA"
BASE COUNT         5058 a         2423 c         3109 g         4230 t
ORIGIN      
        1 tgcgcgatga cagcgaaaac agtagaggag aatttaaatg gctggactat tgaaaaagat
       61 ttttgaatca ggaaaaaaag atgttaaata tttggagaga aaagcagatg agattattgc
      121 tttagcggat gaaactgctg ctctttcgga tgatgctcta cgtgaaaaaa cagtagagtt
      181 taaagagcgt gttcaaaaag gtgaaacact ggatgactta ttggtagaag catttgctgt
      241 tgccagagaa ggtgcgaagc gtgcgctagg attgtatcca tttaaagttc aattaatggg
      301 tgggattgtt ctccacgaag gtaacattgc agagatgaaa actggtgaag gtaaaacgtt
      361 aacagcgaca ctaccagttt atttaaacgc gctttctggt gaaggtgtgc atgttgttac
      421 agtcaacgaa tacttagctc atcgtgatgc tgaagaaatg ggcgttttat acaatttcct
      481 tggactttct gtagggctaa acctaaatgc tttatcgagc acagaaaaac gagaagctta
      541 tgcatgtgat attacgtata gcacaaataa tgaattagga tttgactatt tacgtgataa
      601 tatggttgtt tacaaagaag aaatggtaca acgtccgcta gcttttgctg ttatcgatga
      661 agtcgattcc attttggtcg atgaagcgag aacaccatta attatttctg gtgaagcaga
      721 aaaatcgact attctatatg tgcgtgcaaa tacttttgtc cgtactctta cagaagagga
      781 agattataca gttgatatta aaacaaaatc tgttcaatta accgaagatg gtatgacaaa
      841 aggagaaaac tactttgatg tagagaacct ttttgatttg gaaaataccg taattttaca
      901 tcatattgct caagcgttaa aagctaacta tacaatgagc ctagatgtcg attatgttgt
      961 tcaagatgat gaagtattaa tcgttgacca attcactggt cgtattatga aaggtcgtcg
     1021 tttcagtgaa ggtttacacc aagcgcttga agcaaaagaa ggcgtaacta ttcaaaacga
     1081 atccaaaaca atggcgacaa ttacattcca aaactatttc cgtatgtata aaaaacttgc
     1141 agggatgacg ggtactgcaa aaacggaaga agaagagttc cgcgatattt ataatatgcg
     1201 cgttattgaa atcccaacta ataaagtaat tattcgtgat gaccgtcctg atttaattta
     1261 cacaacgatt gaagcgaaat ttaatgcagt ggtagaagat attgccgaac gtcatgcaaa
     1321 aggacaaccc gtattagtcg gtacagttgc gattgaaaca tccgaactta tttctagcaa
     1381 attaaaacgc aaaggaatta agcatgatgt actaaacgcg aagcaacatg aacgtgaagc
     1441 tgatatcatt aaacatgcag gtgaacgtgg cgcggtagta atcgcaacca acatggctgg
     1501 tcgtggtacg gatatcaaac ttggtgaggg tacgattgaa gctggaggtt tagcagttat
     1561 tggtacagaa cgtcatgaat cacgtcgtat agataaccaa ttacgtggtc gttctggacg
     1621 tcaaggagac cctggtgtga ctcaatttta tctttctatg gaagatgaat tgatgcgtcg
     1681 tttcggttca gacaatatga aatcaatgat ggaacgcttt ggtatggcag aagatgctat
     1741 ccaaagtaaa atggttagtc gtgcagttga atccgcacaa agacgtgtgg aaggaaataa
     1801 ctttgattcc cggaaacaag ttttacaata tgatgatgta cttcgccaac aacgggaagt
     1861 tatctataaa cagcgttatg aagtaattaa tgcagaaaac agtttgcgtg aaattattga
     1921 acaaatgatt caacgaacgg tcaactttat cgtttctagt aatgcatcaa gccatgaacc
     1981 tgaagaagct tggaatctac aaggaattat cgactatgtg gatgcgaact tacttcctga
     2041 aggcactatc acactagaag atctacaaaa tagaacaagc gaagatattc aaaatctaat
     2101 tttagataaa atcaaagcgg cttacgacga aaaagaaaca ctactacctc cagaagaatt
     2161 taacgaattc gaaaaagtag tattgcttcg tgttgttgat actaaatggg ttgatcatat
     2221 tgatgccatg gatcatttac gtgacggtat tcatttacgt gcgtacggtc aaattgatcc
     2281 gcttcgtgag tatcaatcag aaggctttga aatgtttgaa gcaatggtat cgtccattga
     2341 tgaagatgtt tctcgttata ttatgaaagc agaaattcgc caaaaccttg aacgtgagca
     2401 agttgccaaa ggggaagcaa ttaatcctgc tgaaggtaaa ccagaagcga aacgccaacc
     2461 aatccgcaaa gatcaacaca ttggacgtaa tgatccatgc ccatgtggta gcggcaaaaa
     2521 atataaaaat tgtcacggta aagaagcata gattgaaaca atttaaaaag cgcctgaaag
     2581 acggcgcttt ttgctatgaa agtttataag taaatttaaa aaaggtggaa ttagaatgga
     2641 attagcagaa attcgtaatg aattagaaaa aacagcgcag caaatcaaag actttagggg
     2701 gtctctttga cttagacagt atggaagttc gaatcgctga gctagaagac caaatgttag
     2761 atccgaattt ttggaatgac caacaagcgg cacagaaagt aattaatgag tcaaacggat
     2821 ataaagaaac ataccaagct tttcatgcgc tagaagaaga acaagaaagt atggaaatta
     2881 gtctagaatt attaaaagaa gaagcagatg aagatttaca agaagaatta gaaaaagata
     2941 ttaaagctta catggcgact attagtgagt ttgaattaaa actgatgcta agtgatccat
     3001 atgacaaaaa taatgctatt ttagaacttc atccaggtgc tggtggtaca gaatcacaag
     3061 actggggttc gatgttactt cgtatgtatc aacgttggtc tgagaagaaa ggctttaaag
     3121 tagagatgct tgattaccaa gcaggggacg aagctggaat aaaaagtgtc acgttactta
     3181 taaaaggcca caatgcttac ggctatttaa aagcggaaaa aggggtgcat cgtctagtgc
     3241 gtatttcgcc atttgactca tccggcagac gtcatacatc attcgtttcc gtggatgtaa
     3301 tgcctgaatt agatgatgat attgaaattg aagtacgtac agaagacttg aaaattgata
     3361 cgtaccgcgc aactggtgca ggtggacaac atatcaatac aactgactca gctgttagga
     3421 tgacacatat tccatccggc atcgttgtaa cgtgccaatc tgagcgttct cagcttaaaa
     3481 accgtgaaca ggcaatgaaa atgttaaaaa caaaattata ccaaaaagaa caagaggaaa
     3541 aagaacgcga gctagcagaa attcgaggag aacaaaaaga aattggttgg ggaagccaaa
     3601 ttcgttccta tgttttccac ccttactcca tggtgaaaga tcatcgcaca aattacgaaa
     3661 ccggtaatat tcaagcggta atggatggag acttagatga atttatcaat gcatatttgc
     3721 gttctaggat tggataaaag agatggcaaa taaaagaaag aaacaaccgt tatccccagt
     3781 tgtttctaaa ttaattgagt atatttatgt cattataggt gcagctctca tcgcacttgc
     3841 ttttaatgtt ttactactcc cgaatcacgt tgcttctggc ggagtgagcg ggataagtac
     3901 aatcattaac tatttaacag gttggaatcc tgcttttatt cagtgggcat ttaatattcc
     3961 tttatttcta gcgggattat tctttttagg ctatcaattc gggttgaaaa cttttgtcgg
     4021 cacgatgctt ttaccgttct ttgtgtattt aacgcaaggc ttggagccat ggacgcatga
     4081 acctcttgta gctgctttgt ttggcggcgt acttgtagga atgggacttg gaatcgtttt
     4141 tcgaggcaaa gcatctactg gtggcacgga tgtcgctgca caaattttgc ataagtattc
     4201 tcatctaaca ttgggaattt gtgtggcttt gattgatgga ttcgttgtta tttcggcaat
     4261 gtttgttttt gacattgaat cagggctgta cgcacttgtc ggattattcg ctacaagtaa
     4321 aacaattgat ttggtgcaag ttggtttaaa tcaatccaaa acagtcttta ttatttctga
     4381 aaatcaagaa gcaatccgcc aagcaattct gtttaaaatt gaccgaggca ttactcggct
     4441 ctccgcaaaa ggtggatata cagaggatga caagcaaatt ttattatgtg tgattgcgca
     4501 aagtgaattt tcaaggttaa aagaagttat aaaagaaata gacccagagg cttttgtggt
     4561 tgtaatgagc gcaagtgaag taatgggtga aggttttact tcataaaaaa gtaccatttc
     4621 ctaacttttt tagtcaggaa atggtacttt ttttaagttt tcaggcccgc tttttgacaa
     4681 tttgatgaca gtcgagttta gcctagttgc agacctcgag ctattttaac tagattggtc
     4741 tattccgcta gctagaactg taatgatttt taatgtacct gtaatgttat ttagggtaaa
     4801 aacaagttac aatgttagca gtagaaaaga ccaatgtggg ttctttttta ttttgtctta
     4861 ataacactag accgcagaca tatatataaa ttggaaatca acgtaataat cgtatttcct
     4921 attacaataa tcgagatatt gtcacaccct gaaatataat tgtaatgcaa ttaacctata
     4981 gatgaaaaac tgtcatggta taattaagct tatgttgtga gtttaaattc gtacctacaa
     5041 acaactcatc ttcatggtta ccatgcatta cctaaaatgt aactcagtag aaaggcatag
     5101 taaggtgata aaatgatatt aatggaagat gtttataaga aataccctaa cggcataaca
     5161 gctgccaatg gactcaacat taacattggc gaaggggaat ttgtttatgt agtaggcccg
     5221 agtggtgctg gtaaatctac cttcatcaaa atgatttaca gagaagaacg agcgacaaaa
     5281 ggcaaaatca tcgtagacaa atttgatttg attaatatga aaaatcgtga aatcccatat
     5341 cttcgtcgta acgtaggcgt ggtattccaa gattacaaat tacttcaaag caaaacagtt
     5401 tatgaaaaca ttgcttatgc gatggaagtg gttgaaacag agccatccgt aattaaagaa
     5461 cgtgttatgg aagtactaga tttagtcaac cttaagcata aagtaagaat gttgccggat
     5521 gaactttccg gtggtgagca acagcggata tccattgccc gctccattgc aaatatgcct
     5581 aaagtattaa tagcagatga accgaccggt aacctagatc ctgatacttc atgggaaatc
     5641 atgaatatcc ttgaagaaat aagcaatcgc ggaacaacca tcgtgatggc aacccacaac
     5701 aaagaaattg ttaacacatt gaaacaccgg gtagtcgcta tcgagaatgg aagaattgtt
     5761 cgagatgagc agcaaggaga atatggctat gaaatttagg actgtaggaa gacatataag
     5821 agaaagtttt aagagccttt accggaatgg ttggatgacc tttgcagcag cgagtgcagt
     5881 aacagtaaca cttatcttag tcagcgtgtt ttttgcaata ttgatcaaca tgaacaagct
     5941 tgcaacggat gtagaaaaca atgtacaaat taacgtacat atttctctaa gcgcagacaa
     6001 gaaacagcag caagaacttg agaaaaacat tgagaagatt gatggagttg atagtgtcag
     6061 cttttcttct aaggatgacg aattgaagaa attagttggt gcgtacggca aaaacttcga
     6121 attgtttaaa caagataatc cactatacga tgtgtttgtt gtagaggcta aagagcccac
     6181 acaaacaaag actattgcta aaaaagtaga aaaattacag tacgtagata atgtagaata
     6241 tggtgagaaa acagtcgata aattgtttga taccttgaaa tggggacgat atgctggtat
     6301 tatactaagc attgggttgt tactaacagc gatgttctta atatcaaaca caatcaagat
     6361 tgcaattttc tcccggcgaa gagaaataga aataatgaaa ttagtaggag cgaccaactg
     6421 gttcatacgc tggcctttcg ttttagaagg tgcttggcta ggattaattg gctcgattgt
     6481 accagttgtg ttaacattta taggctatgt taatatttac aacttggtga atccgaagtt
     6541 agtgacaagc tcactatcac ttctgcctcc aacaccattc gcttatcaaa ttagtggctt
     6601 gattattgca atcggcgtac taatcgggat ttggggaagc gtaatatcta tccgcagatt
     6661 cttgaaagtc taactcagaa aattacttaa atcgaaataa aaataattta aaagaaaaag
     6721 ctagggagct ttttaggagg taaacttttt gaaaaagaat acgtttattg cgatttcact
     6781 cgcagcagtt atcagtttga cgccagcttt tacgactaat gttttcgcgg acgtgaatac
     6841 agacattcaa aaccaagata aaaaaattaa cgacatcaag tctaaaaaaa cagatttaca
     6901 atcagatctt tctggtttag tagcagacct tgagaaagct caagaaaaag ctaaatctct
     6961 acaaggagaa tttgataaaa caggcaaaga actaaaaaaa cttaatgaag atattaaaag
     7021 tatcaatgaa cgtattaaag aacgcgaaac tgttttaaaa gaacgtgctc gtgcgatgca
     7081 aaaaacttct aattctaatg cttatcttga agttatctta gatgcagaaa atctttctga
     7141 cttagttggt cgtgtttctg cagttaacca attagttgat tctgataaat ctattttaga
     7201 agatcaacaa aatgatgaaa aagctttaaa aacaaaacaa actgctgtta agaaaaaaca
     7261 agaagatcaa gcaacagcaa ttcatgaata tgaagcacaa caaaataaaa tcgaagcaca
     7321 aaaagctgaa aaagaagcaa tcgttgctca actagcttct gatcaagcaa gtgctgaaaa
     7381 tgcaaaagct ggtcttgtaa gtgaacgtga taaagcagct aaagaagcta cagcacgtgc
     7441 gacagcttta cgtgaagcaa catcttcaaa cgttggacaa gaatcaagta gttctgctac
     7501 ttctacatca agtggaaaat ctaatacaac gaaaaatgtt gcatcaaatg ataacaattc
     7561 agcaccaagc gcagcaacac catctagtgg cggatactca gcaatgattg ctgcagctaa
     7621 cgcacaactt ggaaaacctt atagccttgg agcaactgga ccaagcgcat ttgactgttc
     7681 aggatttact tcttatgctt tccgtgcagc tggtgtttct cttccaagaa catctggtgg
     7741 acaatatgca gcagcatcta aaatcagcgc tagccaagca aaaccaggtg acttagtatt
     7801 ctttaactat ggtagcggaa ttgctcacgt tggaatttat gttggtggcg gtcaaatgat
     7861 taacgctcaa aacaatggcg ttaaatatga caacatcact agcggttact gggctaaata
     7921 tcttgtagga tatggccgcg tagctaactt ctaattatta ttgaaaagtt aaaaagcacc
     7981 tttgtcgttt taaacaaagg tgctttttta tatggtatgg taaagggaat tatgaagttc
     8041 ctagtcaaat agagaataga aaaggagctt aaaatgttaa aaaaatatgg ggtagtaacg
     8101 attcttagcc tattggttat ttccgcgcca ctaactggtg cgcacgcgga tactatcaat
     8161 gatatgcaaa agcgccaaaa tgaaattgaa caaaaaaaat cagaactaga taaaaatata
     8221 gactcgaaaa actcggaatt aaatcattta gaaagtgctg aaaaagacgc tgcaaaagaa
     8281 ttagaatcac ttatgaaaag tcttgatgcc actaacaaga aattaaaaga gcaggaagat
     8341 aaagtgagct ctgaaaacga gaaactaaag aaattgcaaa aagaaatgga aaaactgcgc
     8401 aatgatattc gcgatcgtca aaaagtactt gataatcgag cgcgtgctat ccaaacaact
     8461 ggaacagcca cttcttattt agatatgatt tttgaagcag atgattttaa agaacttgtt
     8521 gaccgcgtga cagttgtatc ggcaattgta aaagcggacc aaaacattat gcaagaccaa
     8581 aaagatgatc aagataaact aaaagtagca gaatctgctt ctcagaaaaa actagagaat
     8641 ctaaaagtac ttgcagtgga attagaagtt tcgaaaaaca atatggaaag tcaaaaacaa
     8701 gaaaaaaatg atttagttat ggctctagca aacaaaaaag acttaactaa gagcgaacaa
     8761 acccttttag ctagtgaaca aggtgcgctt actgatgaag aaaaacgact tgcttctaat
     8821 attgcaggtg aaaaagcaaa acaagaggct gcaattaaag ccgctgaaga gaagcgaatg
     8881 caagaagccg cagcagcaag cgctaaaagt tcctctgttg ttaaacaaca accaagttca
     8941 gattcaagtg gagctacaga aacagtaagt tccggtggag gccaatttat taaaccagct
     9001 tctggtatat taacttctgg atttagcgaa cgaacaaatc ccgtgactgg caaatatgaa
     9061 tcccacaaag gtcaagatat tgcaggtggc ggtacagtta ctgtttcagc tgcagcatca
     9121 ggaacagttg tattttcagg gtttggcgca tcaggtagtg gatttggtgg ttatggttat
     9181 gtagtaaaaa ttgaccatgg caatggattc cagacactat acggacatat gcgtgcaggt
     9241 agcttgaaag tagttaccgg ccaacaagtt tcccaaggcc aaccgattgg tattatggga
     9301 tcaacaggtc aatcgacagg acaacatcta cattttgaaa tacataaaaa cggtattcca
     9361 gtcgatccag caccttatat ttaattcaaa aaccattgat gaaaaatcaa tggttttttt
     9421 cttgtgttga aacgaactgg aataggctaa ttgcagattt tatgatatga tactactatc
     9481 agtttgtgta agaaaagggg gaacacaatg ggactgttgg cttatctatt agtgattttg
     9541 ctaattttaa atgtattctt tgcggcagtg acggtcttct tagaaagacg cgatacatcc
     9601 gccacttggg cttggttgct agtcttaact tttgttccga tatttggttt cattatctat
     9661 ttgatttttg ggagaaaatt atcaggcaaa aagattttcg attggaaggg acaagaaaaa
     9721 attgggatac aggaatctac tgccaatcaa atagaaatga tacggcaaaa agaatttcca
     9781 tttagcgatc cgaatgtgaa aaaacatcgt gatttaatct atttattact cgtaaacgat
     9841 ggtgctattt taacgcaaga caatgaagtg gaactttttg tagatggaca tgagaaattc
     9901 gatgcgctaa ttgctgatat tgaaaaagcg aaagatcata tacatctcat ctattatatt
     9961 ttccattctg atgaactagg caatcgctta atgcgcgtgc tggaaagaaa agcagcagaa
    10021 ggtttaaatg tgaaaattat ttatgatgca atgggttcaa ggacaacgaa aaaatcattt
    10081 ttccgtacgt ttcaaaaaaa tggtggtcta gttagacctt tttttccgtc taaattacca
    10141 ttgattaact ttcgtctcaa ctaccgaaat caccggaaat tggctataat cgatggagat
    10201 gttggttata ttggtggttt taatattggt gatgaatatc ttggggcatc gaagaaattt
    10261 ggttactggc gtgatacaca tttacgtgta catggaaaag ctgtttatgc gatgcaaact
    10321 cgctttatta tggactggaa ttctgcatca tccacacata aaattgatta caaagcgcga
    10381 tacttcccga cttttcatgg gaaaggtcat acaagtatgc aaattgtttc gagtggtcct
    10441 gattccgaat ggcaacaaat caaaaatggt tacatcaaaa tgatcaatgc tgctaaaaaa
    10501 acaatttatt tacaatcacc ttattttatt ccagatgcaa gtttgcttga agcaatcaaa
    10561 atcgcagcac tttctggggt agatgtcagg gttatgattc ctaataagcc agaccatgct
    10621 tttgtttacc gcgcaactac taactacgcc ggtgaattaa tggaaacggg agcgaaaatc
    10681 tttatttatg ataatggttt tatccacgcg aaaacactcg ttgtagatgg cgaaattgct
    10741 tcagttggaa ccgcgaatat ggatttccgg agtttccgac ttaattttga agtaaatgct
    10801 tttatttatg aaaaacaaat ggtgcaaaaa ctagaagatg cctttttgga agatattcta
    10861 aaatcgtatc aactaacacc tgaattatat gcaaaacgat ctttatggat taaatttaaa
    10921 gaagcggtaa gccgactttt atcgcctata ttatagaagt attagggaaa gctggtgtag
    10981 aaaatggatg tttttgttga aatactaaat ggaataggga gactacttct acaaccagca
    11041 ttgtatgtag gaattctttt agcgatactg gctggtttta accgtgtgag gtgggaacgg
    11101 aaatcattta gtatcagtat ttattcacct tggttagaat tgaaaagttt ctttggtgtg
    11161 agtttgttat ttggattagc tatttctgtt gttacctcgc tcattggatt tggtgtgatg
    11221 atagagtggg ttgctatttt taatgtagta gcttgtttct tactaattgt agggatgttc
    11281 cgtttgagtt caacggcatt tactatcggt attacgagtt tgatttttta tttctgctat
    11341 tattttgatg tgagtttagc accgtttacg aatgaggcat tcacgtatga ctcgattttt
    11401 attgataact ttatgatttc catgacattt ctgctcgcag tattgttatt tgtagaagct
    11461 ttcttaatcc agtatacaag cgcaaaaaat ccctctccat ctcttcggaa aagtaagcgc
    11521 ggtaaattaa tcggttcctt tcaattaaga aaattatggt ttgtaccgat tgttatgttt
    11581 ttaccaggag atgtgtttac gaaaattttt gagtggtggc cagtctttgc tattggttcg
    11641 cagtcgtatt cattaatcat tttaccgtta ttcatcggct tccaacaaca agtacagaca
    11701 caacttccgg aagaagcaag ccgtaaaatt gctgttgagg taacaacatt agcgacaatt
    11761 attgctgtag ctggtttatt aggaattgtg atgccagtac tgacattgtt cgctttcatg
    11821 ttcgctgtaa ttggtcgatt ttggatttct tatcgccatt atcgttccga aaaattagca
    11881 ccaaagaaat ttggtcctca gccagatggg cttgtagttc tgggtgctcg tgcggccact
    11941 ccgtctgcgc gactaaactt gaaagctggt gaaaaaatta cagaagtaaa cagtcgacca
    12001 gtgcgtactc gcgaggaact ttacgaagcg ctaaacttaa accgagcatt ttgtaagctg
    12061 aaagtaattg ataacgctgg tgaaccacgt tttgaacaaa cagcacttta tgagaatgaa
    12121 tcatttgaac ttggtttgtt attagtagag ccaagataat tttaggacac cagtgttgtt
    12181 tgaaagcagc attggtgttt taagtttttg taaagataag attaatataa aggcatttct
    12241 acccgaaaaa ggttaattca tgctatattt tagataaaag tgttacataa agaagggatg
    12301 ggaagtacgt tggtaaaaat tcttgtagtt gatgatgaag cttctattgt tacgttactg
    12361 caatttaaca ttgaaaaagc tgggtttgat gtggtaacag cagaagacgg cagaaccgga
    12421 tacgaactcg ctttgtccga aaaaccagat ttaattgtgc ttgatttaat gcttcctgag
    12481 atggacggaa tcgaagtaac aaaaaaactt cgccaagata aagtaaatgt gccaatttta
    12541 atgttaacgg caaaagatga agaattagat aaaattatcg gactggaact tggagcagat
    12601 gactatatga ctaaaccgtt tagcccaaga gaagtagttg caagaattaa agcaatcttg
    12661 cgtcgaacag aaggaaaagc cgaaataata gaagaaataa ccgaagattc ggaagctacg
    12721 atattaattg gtgatttgaa aattttgcca gatagttatg aagtgtattt acaagatgat
    12781 ttacttgatt taacgccaaa agaatttgag ttattgctat tcttggcaaa tcatcgtggc
    12841 aaagttttct ctagagacca attgctcgat actgtctgga actatgatta cgttggagaa
    12901 acccgaattg tagacgttca tgtcagccat ttgcgcgata aaatcgaact agatacaaaa
    12961 caacctaaat acatcaaaac aattcgtggc ttcggttata aaatggagaa cgtgaaataa
    13021 tgaagaaatt atggctgaaa atcgggttat ccttttttat cttatttttc gttgtgatgg
    13081 ttattgttgg cgttttttcc ggggaactaa tgaaatcaac gtacttaaat atgaaagaaa
    13141 atcaattaga agatgacgca aaaattctgc ttcaaacaac taatatggag aatttagatt
    13201 tagataaaga tgccgcaact atccaaaaaa gtcttgatcc acttggcgag gatattgatg
    13261 cacgcattac ggtgatcgat agcaaaggcg acgtggtagc tgatacaaaa aaagacccag
    13321 aaaaacttga taaccatatg aatcgccccg aagtaacaga tattctgaaa aaaggggaaa
    13381 gcgttggtat ttcaatccgt gaaagtgatt cacttggtta tagtatgctt tatgtcgcgg
    13441 ttcctgttaa acatcaaggc aaaacagatg gtgtactgag aatttcgatt tcacttgaat
    13501 ctgttgatgc ggcggttgct aaactctggg ggaacttagc gcttattttc ggtattgcac
    13561 ttgtaattat cgcagcaatc agtgttttta ttgctagaaa aatcactaga ccagttcgcg
    13621 aaatcatcga agtctctaca gatttggcca atcataaata cgatagtcgc atccacggta
    13681 aaataagcgg agaacttcaa gatctctcca tcagtgtaaa cacattagca gaaagcttgg
    13741 aaacgcaaat gtttgaaatt aagcaaaatg agcaacgact taatgctatt gtccaaaact
    13801 tagtaagtgg cgtaatgctg attaatgtcg ataaacaagt catcatgacc aaccgcacca
    13861 tgtatcaaat tttaggagag acagaaatca ccggcaaacc attttatgaa gtaattaaaa
    13921 gttttgcact gagccagttg atagaagcga cttttgaaac aaaaaccatt caacaaaaag
    13981 aaattattct ttatttcccg cgcgaaatga ttttggatgc aagtgtttct ccaattttag
    14041 gggagaatgg ggaaattact gggattattt tattactgca tgatatcact caaattcgtc
    14101 atttggaaaa tgttcgttct gaatttgtca ccaacgtttc tcatgaatta aaaacacccg
    14161 tgacggctct caaaggattc gcggaaacat tacttgacgg cgcaatgtac gacgaagtgc
    14221 tactaaaaaa attcctaacg attattaaag aagaaagtga tcgattgcac cgtttgatta
    14281 tggatattct cgcactttct agaattgaac aaaatccggt cgcggaaaac gttgagctgg
    14341 ttgacgttga cgaggtaatt gaacaatctg ctcgcactat ttttgaaatg gcgaccgaaa
    14401 aaaatattcg agtaaccatt ccagaaaaaa caagtgcatc cgttatgatt gaaacagatc
    14461 gtgacaagct gcaacagata gtaattaact tgctttctaa tgcaatcaac tacaccccag
    14521 tcgatggaaa agtagaagtt aaattaatcg agcaagaggc agaagttata atagaagtaa
    14581 ctgataacgg aattggcatc ccggctaaag atattgaccg cgtgtttgaa cgattctacc
    14641 gagtggataa agcccgcagc agacactcag gaggcactgg acttggactt tccatcgtca
    14701 aacatttagt tgaaaactgt ggtgggcgaa tcgaagtaga aagccaagaa gaagttggct
    14761 cgaccttccg cgtcacttta ccaaaaaaag cctaacaaat atcctgtttg aaagaatgta
//
LOCUS       DABQVC010000055        14787 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.055,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000055 DABQVC010000000
VERSION     DABQVC010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14787
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.055"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(66..1823)
                     /gene="pyk"
                     /locus_tag="IBJ56_001201"
     CDS             complement(66..1823)
                     /gene="pyk"
                     /locus_tag="IBJ56_001201"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HAM3417460.1"
                     /translation="MKKTKIVCTIGPASESVDTLVQLIEAGMNVARLNFSHGDFEEHG
                     ARIVNIREASKKTGKQVAILLDTKGPEIRTNDMVGGKLEFQTGDVVRVSMTPVEGTKE
                     KFSVTYGELYDDVEIGSSILLDDGLIGLEVIEKDEANRELVTKVLNPGVLKNKKGVNV
                     PNVSINLPGITEKDAADIRFGLEQGIDFIAASFVRRATDVLEITKILEEHNATHVQII
                     PKIENQEGVDNIDEILQVSQGLMVARGDLGVEIPAEEVPIVQKELIRKCNKLGKPVIT
                     ATQMLDSMQRNPRPTRAEASDVANAIFDGTDAIMLSGETAAGDYPVEAVKMMAKIAVR
                     TEEVLVAQDKFALKLHENTDMTEAIGQAVGHTAKNLNVQTIVAATQSGHTARMISKYR
                     PKSHIVAVTFNEHVYRGLALSWGVYPRLATPVSNTDEMFDLAVKESLASGVAKQGDLI
                     IITAGVPVTESGTTNVMKIQLIGEKVVKGQGIGSKSVIGKAIVAKSNAEALEKAEEGG
                     ILIVKTTDKEMLPAFEKSAAVVVEEGGLTSHAAVVGINLGIPVIVGAKDATSLVKDGE
                     IITVDSRQGVVYNGKTATH"
     gene            complement(2106..3065)
                     /locus_tag="IBJ56_001202"
     CDS             complement(2106..3065)
                     /locus_tag="IBJ56_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent 6-phosphofructokinase"
                     /protein_id="HAM3417461.1"
                     /translation="MKRIAILTSGGDAPGMNAATRAVVRKAIYEGLEVYGINYGFLGL
                     VNGDIRKLELGSVGDLLHRGGTFLYSARYPEFATEEGQLKGIEQLKKHQIDGLVVIGG
                     DGSYHGAEALTKRGFPTIGIPGTIDNDISGTDFTIGFDTALNTVLDALDKIRDTATSH
                     ERTFIIEVMGRDAGDIALWSGLAGGAEAIIVPEESFNMDDVVDRLNKGRERGKKHSII
                     VVAEGVMSGNEFAKQLAEYGDYHARVTVLGHVQRGGSPTAFDRVLASRLGARSVELLL
                     ENRGGLAVGIRENRIVENDISEILKEKHTLDQKLFDLASILSI"
     gene            complement(3350..4306)
                     /gene="accA"
                     /locus_tag="IBJ56_001203"
     CDS             complement(3350..4306)
                     /gene="accA"
                     /locus_tag="IBJ56_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HAM3417462.1"
                     /translation="MANEMEFEKPILELKSKIADLKEYNETSDVDLTNEIEKLEKRLA
                     KLESSIYSNMTAWDKFQVARHPERPTTLDYISLLFEDFMELHGDRAFGDDAAIVGGIA
                     TFHGIPVTVIGHQRGKDTKDNLHRNFGMPHPEGFRKALRLMKQADKFGRPIICFIDTK
                     GAYPGRAAEERGQSEAIARNLYEMSDMKVPIISIVIGEGGSGGALALGVGNQIFMLEN
                     AVFSVISPEGAAAILWKDASQAKKAAESMRITADDLFELGITDGIIPEVKGGAHRDLN
                     AQAEEINKTITKSLHALMAFSEEQLMEQRYEKFKKIGVYDTL"
     gene            complement(4296..5180)
                     /locus_tag="IBJ56_001204"
     CDS             complement(4296..5180)
                     /locus_tag="IBJ56_001204"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HAM3417463.1"
                     /translation="MLGDLFTKPKKRKYATIPSDGTKADVPEGIMTKCPECKKIMYTK
                     ELQKNLMVCNYCGFHHPIGAKARIDMLVDEGSFEEIDASLTTANPLGFEDYMDRIEKD
                     KQKSGLNEAIVTGHATIDGNPLVIAVMDSRFRMASMGSVVGEKIFRAVEDADKTNKPF
                     VIFTASGGARMQEGMLSLMQMAKTSAAFKRFSNHGGLIITVMTHPTTGGVSASFASLG
                     DYNFAEPGALIGFAGRRVIEQTVREELPEDFQTSEFLLKHGQLDDCISRLDLQNKLSF
                     ILSIHVKTPEVGGEADGE"
     gene            complement(5398..8724)
                     /gene="dnaE"
                     /locus_tag="IBJ56_001205"
     CDS             complement(5398..8724)
                     /gene="dnaE"
                     /locus_tag="IBJ56_001205"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HAM3417464.1"
                     /translation="MGFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVL
                     YGVVEFYQKCLAADIKPIIGMTVTIQGYLNPINSYELILIAESTAGYHELLKIASAIQ
                     TREEGPELPQSWLRAYSSNLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKES
                     VYLSAQKENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDW
                     TTLPLAGPNYFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNE
                     GQNASDVLRQTAFAGLKERNLLGVEYQERLEYELKVITEMGFADYFLIVWDVIRYSRE
                     AGILTGPGRGSAAGALVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR
                     DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGI
                     TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVA
                     LQLGSGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADIS
                     LEDKKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDT
                     FIARKHGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVS
                     KKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQL
                     AYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENES
                     SIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCF
                     DEFGEDRATILATIDAVLQYISLLGEDSKGMNLFAEDDDFLKKMKPRYRKTAPISIDE
                     KLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSSGKNYQVAAYVHEVKSIRTKK
                     GETMCFLTISDDSKELSAVMFPESYRKFASFAQKGEILFLQVKADTRNGELQLIINKA
                     EDLKEIKAPVRLFLKLTEPQQMEQIKPVLTRYKGDSKVIVHQAITKQTAELKNIQVTP
                     SNELQEALEELLGKENVVIK"
     gene            complement(8846..9781)
                     /locus_tag="IBJ56_001206"
     CDS             complement(8846..9781)
                     /locus_tag="IBJ56_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HAM3417465.1"
                     /translation="MKSEILQQIKQYETIILHRHVRPDPDAYGSQMGLAEIIRASFPE
                     KKVYSVGNDEKSLQFLGIVDEITDEIYKDALVIVCDTANQERISDGRFNLGKALIKID
                     HHPNDDAYGDLLWVDTTASSCSEMIVAFWEMFSDELILNETAARLLYAGIVGDTGRFL
                     YPSTTEETLRLSAHLVTFPFDRPALYRELYELPKNTVKLSGYILQNFVMDENGAATVY
                     LSDTLLNEFEVDPRDASALVSCIENVEGIKAWIMFIQEGPVFRARLRSKGPVINELAK
                     EYGGGGHPLASGATLHNEEEIKEMTAKLQRICADK"
     gene            complement(9802..11115)
                     /locus_tag="IBJ56_001207"
     CDS             complement(9802..11115)
                     /locus_tag="IBJ56_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HAM3417466.1"
                     /translation="MATKHEQILKYIENLAVGEKISVRKIAKNLSVSEGTAYRAIKDA
                     EIIGFVSTIKRVGTLRIERKQKDSIEKLTFAEIVNMIDGQVLGGRAGLYKSLNKFVIG
                     AMTVEAMERYTDAGNLLIVGNRVSAHELALKRGAAVLITGGFDTDDEVKRLADEKELP
                     ILSTSYDTFTVATMINRAIYDQLIKKEVVFVEDILTPLETTAFLSTSDKVEDWHKMEE
                     ATGHSRFPVVNRAMRLTGMVTSKDILEKNPSISIERVMTKNPLTVGPKMSVASVAHMM
                     IWESIEVIPVVKDDLTLIGIVSRQDILKSMQMIQKQPQVGETIDDTIANQLSEKADTG
                     EEADYEFKVSPQMTNSLGTLSYGVFTQVVCDVVQQKLFSMKKRNVAIENVTMYFLKPV
                     QMDATIIIKPRILEMGRKAGKLDVELYLEGILTGKAIVACQMMER"
     gene            complement(11141..11827)
                     /locus_tag="IBJ56_001208"
     CDS             complement(11141..11827)
                     /locus_tag="IBJ56_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAM3417467.1"
                     /translation="MKISFHGQSCIKIITGDTTILVDPFISGNEKCDLKAEEQMPDFI
                     VLSHGHDDHVGDTVEIAKNSGATVICNADLASFLAVEDGLENIAPMHIGGKRQFSFGQ
                     VKLTQAFHGSQTVRDGRIVNLGFPTGIVFTIEDKNIYFAGDTGLFSDMKLIGELNPLD
                     VAFLPIGDNFTMGPEDAAIAARFLQAKLVVPMHYNTFPLIAQDPHKFVASLDEGITGK
                     VLEIGEGIEI"
     gene            11992..13089
                     /locus_tag="IBJ56_001209"
     CDS             11992..13089
                     /locus_tag="IBJ56_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HAM3417468.1"
                     /translation="MEKNIDVLQNWLKDQGAEVAFLTDPENIAYFSGYHSEPHERVLG
                     LAVFPDSEPFLFTPALEVEDVRGGDWTHPAYGYNDTENPFTIIADEIKKRVANPSKFA
                     IEKKHMSVDRYEQLGGLFSGSSFIPIEHKIEQIRLIKTEAELKILKEAALLADYAVQV
                     GVNEIAEGKTEAEIVAKIEYEMKKKGVTAMSFDTMVLTGKNGALPHGTPGETKIKKGD
                     LVLFDLGVVHKGYCSDITRTVAFGDISDEQKKIYDTVLEAQIAAVEKVKAGVKASEID
                     LTARNIIREAGYGDYFPHRLGHGLGASVHEFPSITETNNMELQENMVFTIEPGIYVPG
                     VAGVRIEDDLVVTKDGVQVLTEFPKTLQVID"
     gene            complement(13132..14244)
                     /gene="ald"
                     /locus_tag="IBJ56_001210"
     CDS             complement(13132..14244)
                     /gene="ald"
                     /locus_tag="IBJ56_001210"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HAM3417469.1"
                     /translation="MLVGVPKEIKNNENRVAMTPASVFSYVNAGHTVYVEKDAGIGSN
                     YQDADFVQAGAKIVETAKEAWDVDMVVKVKEPIASEYTYFKEGLLLFTYLHLANEPTL
                     AKALMESKVNSVAYETVELADHTLPLLSPMSEVAGRMAAQIGAQFLQRTNGGMGVLLG
                     GVPGVEKSEVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLRELDDIFGNQVQTLM
                     SNDFNIETAVKKADLVIGAVLIPGAKAPKLVKEHVIKQMIPGSVLVDIAIDQGGIFET
                     TDHVSTHDNPTYEKYGVLHYAVANMPGAVPRTSTLALTNATLPFGLKLANQGLKAAVQ
                     NDPFLLRGLNTYQGHITYKAVADSLDLPYTDSKELI"
     gene            14483..>14787
                     /locus_tag="IBJ56_001211"
     CDS             14483..>14787
                     /locus_tag="IBJ56_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HAM3417470.1"
                     /translation="MLQQYERVLVAVDGSKEAERAFQKAIQVANRNDAALGLVHVIDT
                     RAFSSVANYDTSMADKATEYADELLSGYKEDALKAGVTKVESYIEYGSPKTAITKEAA
                     "
BASE COUNT         4326 a         3218 c         2554 g         4689 t
ORIGIN      
        1 aaacaataca ggcgtgcgca taaaaaaagc gtcccgcatg cgggacgctt ttagaaagtt
       61 aactattaat gtgttgctgt tttgccgtta tatacaacac cttgacgaga atcaacagta
      121 atgatttcac cgtcttttac aagagatgtt gcatctttag cgccaacgat gacaggaatg
      181 cctaggttga ttcctacaac tgctgcgtgg ctagtcaagc cgccttcttc cacaacaact
      241 gctgcacttt tctcgaatgc aggtagcatt tctttatccg ttgttttaac gattaagatt
      301 ccgccttctt ctgctttttc aagtgcttct gcattggatt tagcaacgat tgctttaccg
      361 ataacagatt tgctgccaat accttggcct ttaacaactt tttcaccaat taattggatt
      421 ttcattacgt ttgttgttcc actttcagta actggaacac cagcagtgat gataattaag
      481 tcgccttgtt ttgcaacgcc agaagcaaga gattctttca ctgcaaggtc gaacatttca
      541 tctgtgttgc taactggagt agctaggcga ggataaacac cccatgaaag tgctaaaccg
      601 cggtatacat gctcgttgaa tgttacagca acgatatgag atttaggacg gtatttagag
      661 atcatacgcg ctgtgtgacc actttgagtc gcagcaacaa tagtttgtac atttaggttt
      721 ttcgcagtat ggccaactgc ttgaccgata gcttctgtca tatccgtatt ttcgtgaagt
      781 ttaagtgcaa atttatcttg agcaactagt acttcttctg tacgaacagc gattttcgcc
      841 atcattttaa ctgcttctac tggataatcc ccagcagctg tttcaccgga caacataatt
      901 gcatctgttc catcaaaaat cgcattcgct acgtcacttg cttcagcgcg agttggacgt
      961 gggttacgtt gcatggaatc aagcatttgt gttgcagtaa taacaggttt accaagttta
     1021 ttacattttc tgataagttc tttttgtaca atcggaactt cttcagctgg aatttcaaca
     1081 ccaaggtccc cacgagcaac cattaggcct tgagatactt gtaagatttc gtcgatatta
     1141 tcaacgcctt cttggttttc gattttagga atgatttgta cgtgagttgc attgtgctct
     1201 tctagaattt tagtgatttc aagaacatct gtagcacgac gtacgaaaga tgcagcgata
     1261 aaatcaatac cttgttctaa accaaagcgg atatcagcag catctttttc tgtgattcct
     1321 ggtaggttga tagaaacgtt tggtacgtta acaccttttt tatttttaag tacacctggg
     1381 ttaagtactt ttgttactag ttcgcgatta gcttcgtctt tttcgattac ttcaagaccg
     1441 attaagccgt catcaagtaa aatggaagaa ccaatttcta catcatcgta aagttcgccg
     1501 taagtcacgg agaatttttc ttttgttcct tcaacaggag tcatagaaac acgtacaaca
     1561 tcacctgttt ggaattctaa ttttccgccg accatgtcgt ttgtacggat ttctggacct
     1621 tttgtatcaa gtaagatagc cacttgttta ccagtttttt tcgatgcttc gcggatattt
     1681 acaatacgcg caccgtgctc ttcaaaatct ccgtgagaga aattaagacg tgcaacgttc
     1741 attcctgctt cgatcaactg aactaatgtg tcaactgact cacttgcagg accaattgta
     1801 caaacaattt tcgttttttt catgttatta ctcctcctag aacttagcta ttcattcgta
     1861 tttattataa acatatcttc cacattttac cagtaacaac cttgtaaaac aagtaagttt
     1921 gtgaataaaa tcgcaatcaa cctgcatggt aacgataaca agaaaacgtt ttccagattg
     1981 ttacagcatg cttaatgaac gatttgcatt tctttaccct caaagtttat ttttaataca
     2041 ttactaaaat ttttcacaaa gaaaggctac catgctttgt catggcagcc agctcttcag
     2101 ccgttttaaa tcgacaaaat agatgctaga tcaaataatt tttgatcaag tgtgtgtttt
     2161 tctttcaaaa tttcactaat gtcattttcg acaattctat tttcacggat tccaacagct
     2221 aatcctccgc ggttttctaa caataattct actgaacgtg caccaagacg gcttgcaagt
     2281 acacggtcaa atgcagttgg gctaccacca cgttgaacgt gtccaagaac agttacacgt
     2341 gcatgataat cgccatattc agctaattgt ttagcgaatt cattaccgga cattacgccc
     2401 tcagcaacga cgataatact atgtttttta ccacgttcgc gacctttgtt caaacgatcc
     2461 acgacatcat ccatattaaa actttcttct ggaacgatga tagcttcagc accaccagca
     2521 agtccagacc aaagagcgat atcaccagcg tcacgtccca taacttcaat aatgaaagta
     2581 cgttcatgac ttgtagctgt atcgcggatt ttatcaagtg catcaagaac agtgtttaac
     2641 gctgtatcaa aaccaatagt aaaatcagtt ccagaaatat cattatcaat agttcctggg
     2701 ataccaatag ttgggaatcc acgttttgta agtgcttccg ctccgtgata agaaccatct
     2761 ccaccaataa ccacaaggcc atcgatttga tgttttttca attgttcaat tcctttaagt
     2821 tgtccttctt ctgtagcgaa ttcaggatat cttgcggaat aaaggaatgt acctccgcgg
     2881 tgaagtaaat caccaacaga acctaattct agtttacgaa tatcaccatt gactagccct
     2941 aaaaagccat agttaatacc gtaaacttca agtccttcat agattgcttt ccgtacaaca
     3001 gcacgagtgg ctgcattcat tcctggagcg tctcctccac ttgttaaaat tgcaattcgt
     3061 ttcattttac ttaccacctc agacaatgat attgtttttc atcacatgtg tttattctac
     3121 atgaaaaaag ggcaaatgaa aagcttcaac agagcacttt tttaaacgag aagctttgca
     3181 aatcgccatt ttaaatatcg gtctattccg attcgtacga aaaacggctt tatagcttaa
     3241 ataaacataa ttggtctata cttgtgaatg ggtaaacttt ctttttagcg tttggcatat
     3301 accaaagaag cggatctcct aaaattagga aagccgcttc ttttattgtt tataaagtat
     3361 cgtatacacc gattttcttg aatttctcat aacgctgttc cattaattgt tcttcagaaa
     3421 atgccattag tgcatgtaaa gacttcgtga tagttttgtt aatttcttcg gcttgcgcat
     3481 ttaaatctcg gtgcgcaccg ccttttactt ctggaataat tccatctgta atgccaagtt
     3541 caaataaatc gtcagctgta atccgcatag actctgctgc tttcttcgct tgactggcat
     3601 ctttccataa aatagctgct gctccttctg gtgaaataac agagaaaact gcattttcaa
     3661 gcatgaaaat ttgatttcca acaccaagag cgagtgctcc accacttcca ccttcaccga
     3721 ttacaataga aataattggt actttcatat cgctcatttc ataaagattt ctagcaatgg
     3781 cttcactttg accgcgttct tccgcagctc gacctggata agcacctttc gtatcgatga
     3841 agcaaataat tggtcggcca aatttatctg cttgtttcat caaacgtagc gctttacgga
     3901 aaccttcagg atgaggcata ccaaaattac gatgtaaatt atcttttgta tctttaccac
     3961 gttggtgacc aataactgtc actgggatac cgtggaaagt tgcgataccg ccaacaattg
     4021 cagcatcgtc accaaatgcg cgatccccgt gaagttccat gaagtcttcg aataaaagtg
     4081 aaatataatc aagtgtcgta ggtctttctg gatggcgagc tacttgaaat ttatcccaag
     4141 cagtcatatt gctataaatg cttgattcta acttagctaa gcgtttttct agcttttcaa
     4201 tttcattggt caaatccaca tcagaagttt cattgtactc ttttaagtca gcaatcttac
     4261 tttttaattc taaaatcggt ttctcaaatt ccatctcatt cgccatccgc ttcacctcct
     4321 acttcaggtg ttttcacgtg aatgcttaaa ataaaactta atttattttg cagatcaagg
     4381 cgtgaaatac agtcatctag ttgtccatgc tttaataaaa actccgacgt ttggaagtct
     4441 tctggtaatt cttcacgaac ggtttgttct attacccggc gtccagcaaa gccaataagt
     4501 gcgcctggtt ctgcaaagtt atagtctcca agggatgcaa aactagcaga aaccccacca
     4561 gtagttgggt gcgtcattac cgtaataatc agtcccccgt gattgctaaa tcgtttaaat
     4621 gcagcagagg ttttcgccat ttgcataagc gaaagcatcc cctcttgcat acgcgcgcca
     4681 cctgaagcag tgaaaataac aaacggttta tttgttttat cggcatcttc cacggcacga
     4741 aagatttttt caccgacaac agagcccata cttgccattc taaaacgaga atccatcact
     4801 gcaataacaa gcggattacc atcaattgta gcatgaccag taacaatggc ttcatttaaa
     4861 ccagattttt gcttatcttt ctcaatacga tccatataat cttcaaaacc aagtggattt
     4921 gctgtcgtta aactagcatc aatttcttca aaagagcctt catcaactag catatcgatt
     4981 cgtgcttttg ccccaattgg atgatgaaaa ccacaataat tacataccat aagatttttt
     5041 tgcaattctt tggtatacat tattttttta cattccggac attttgtcat aataccttct
     5101 ggaacatctg ctttcgttcc atcagaagga attgtggcat attttctctt ttttggtttt
     5161 gtaaacaagt ctcctagcaa ggataaccct ccccatttac gctttctatt gtggttatta
     5221 acgattttta atgttgtaaa aataaaaaat gaataaagac atgaaacata aatcaaccgc
     5281 attttcccac aagaagacaa aatgccagtc tatccgaatt acaactggac agactgcgca
     5341 atattgtttt ccacgttaaa ctataacata ctttctataa atatagaaag tctaagatta
     5401 cttaatgact acattctctt taccgagtag ctcttctaac gcttcttgca gctcatttga
     5461 tggcgttact tgaatatttt tcagctcagc agtttgtttc gttattgctt gatgcacaat
     5521 gaccttactg tcgcctttat aacgagttaa aactggctta atttgttcca tttgctgtgg
     5581 ttccgttaat tttaggaaca atcgtacggg ggcttttatt tcttttaaat cttctgcttt
     5641 attgataatt aactgtagct ctccgttcct tgtgtctgct ttgacttgca aaaagagaat
     5701 ctcccctttt tgtgcaaagc tcgcgaattt acgataactt tccgggaaca tgacggcgct
     5761 cagttctttt gaatcatcac taattgttaa aaagcacatc gtttcgccct tttttgttct
     5821 aattgatttg acttcatgta cataagcagc tacttgatag tttttgccgg aagaaagatt
     5881 tgcaagtctt gtaatagcaa gattttgtaa tttattttgg tagtacgata ctggatgcgc
     5941 tgaaacgtat tgacccgtgt ataatttttc tttctccagc ttttcatcaa tcgaaatggg
     6001 cgcggttttc cggtagcgtg gtttcatctt tttcaaaaag tcatcatctt ccgcgaaaag
     6061 attcattcct ttcgaatctt caccgagtag cgaaatatat tgtagcactg catcaatggt
     6121 tgccaaaatc gttgctcgat cctcgccaaa ttcgtcaaaa cacccagaaa atacaagtgc
     6181 ttctaaaacg gtttctgaga gcattttatg tggcattctt tcacaaaaat caaagaaatc
     6241 tcggaaaggt gctttttttc gttcgttaat aatttctaaa atgaatttcg ttggcacttt
     6301 acgaataaca cggaaactat agcggataga tgattcattc tccacttgga agtagtaatt
     6361 actatggttg atgcttggcg ctaacatgct aattccgtag ttttttgctt cggtaatgta
     6421 ctgggaaatt ttgtcgtcat tgccaaaaac agagctaaga agcgacgaca taaatgcagc
     6481 tggaaaatgt gcttttaaat aagctaattg aaaagcgatt tttgaatatg ctgcagcgtg
     6541 acttcggttg aaaccgtaat tcgcgaattg aacaatcata tcatacactt ggttagcgct
     6601 agcatctgaa taacctctac tcttagcacc ttccacaaag tgaattcgct cttcgtttag
     6661 gacatctgct tttttcttgc tgaccgctcg tcttaataaa tctgcttctc caagcgaaaa
     6721 tccagccatt tggttcgcta cttgaataat ttgctcttga taaacgataa cgccgtatgt
     6781 cacttccaaa ataggcgcta aatctggatg aggatattga attttttctt ttccgtgttt
     6841 tctagcgata aatgtatcaa tttgttccat tggacccgga cgataaagcg catctaccgc
     6901 cacgacatct tcaaaagaag ttggttttaa ttttcggagc acgcgtcgaa tcccgtccga
     6961 ttcaaattgg aatacccctg tcgtgtcacc tgtttggaat agtttcaatg tttttttatc
     7021 ttctaaggaa atatctgcta atgttaacgg agtttctcta gtataattga ctgatttcaa
     7081 aacacgatca agtaaactaa gatttctaag tcctaaaaag tccattttaa gtaagccgat
     7141 tttctctaat tctcccatag caaactgggt caaacgtgca tctccgctac ctaattgtag
     7201 cgcgacttgt tctacgagtg gcttgtcact aattactatt ccggctgcgt gcgttgaaat
     7261 atgacgtggc aagccttcca gttgacaagc aacttcccaa atcatttcat tttctttaga
     7321 gcttttaata tggttttcta aacgcggact ttcttgtagt gctttttgta acgtaatacc
     7381 taactgactt ggaatcaact tagaccattc agataatagt acagaattta gcccaaaact
     7441 cctcgcagta tcgcgaatcg ccgcttttgc cgctagtgtt ccaaacgtgc cgatttgcgc
     7501 cacatgcgct tctccgtatt tagataccac atacgaaatc acttcatcgc ggcgattatc
     7561 tggaaaatcc aaatcaatat cgggcatcgt gatacgttct gggtttaaaa atcgttcaaa
     7621 tagcaaattg taacgaatcg ggtctacatc cgtaattctg agtgcatagg aaacaagcgc
     7681 ccccgccgca gagccccgac ctggacctgt taaaattccc gcctcgcgtg aataacgaat
     7741 aacatcccaa acgattagaa agtaatctgc aaaacccatt tccgtaatga cttttaattc
     7801 atattctaaa cgctcctgat attccacacc taataaattt cgttctttta atcctgcaaa
     7861 ggctgtttga cgcaaaacat ctgatgcatt ttgtccttca tttaatggaa atctaggtaa
     7921 taaatgctga tccaaagcaa tttcgacatg acaacgatct gcaagttcac cagtttctaa
     7981 gcatgcccgt ttttcgaact ccgtttgcca atcacgttcc atttcttctt gtgaggtaaa
     8041 ataatttggt ccggcaagtg gtaacgttgt ccaatcgacc gttcgattat cacgaatggc
     8101 cgttaaaact tcttttgctt gcgcatcttt tggttctata tattgtacat ttttcgtcgc
     8161 aacaaccggt acattttctt ctgcagaaaa agtttctatt tttgtgaaaa gacgtggatt
     8221 ttctttttgg gcagataaat aaacagattc tttaccaaaa atttcgacta aatttgcata
     8281 aacttccagt gctccctcgc gattctcctc catcagaaga cgttcgattt ctcctttggc
     8341 accaggtgaa atcgcaatca agttactgct ataagcgcgt aaccagcttt gtggcaattc
     8401 ggggccttct tcgcgcgttt gaatagcact cgcgattttt aataactcgt gatatccagc
     8461 ggttgattcc gcaattaata tcaactcata tgaattaatt ggatttaagt aaccttgaat
     8521 tgtcaccgtc atcccgataa ttggttttat atccgccgct aaacactttt gataaaactc
     8581 gactactccg taaagtacat ttttatccgt aattgctaag gctggataat ggtattcttt
     8641 tgctttagcg attagcttat caatcgatgc tgtacttgaa agcaaatcat aagcgctcgc
     8701 aacttgtaaa tgaacaaacc ccactatcct ctctcctttc aaaactctct ttttccatta
     8761 tatcggttaa gctaaaaaaa agaaagtgtg ttcgtgtttt tatataaaaa taaagccaga
     8821 taattaatcc gactttattt cctaattatt tatcggcaca aatgcgttgc aattttgccg
     8881 tcatttcctt tatttcttct tcattatgaa gtgtcgcacc agaagcaagc ggatgtccgc
     8941 cgccgccata ctctttggct aattcattaa taactggacc tttagaacgt aaacgagctc
     9001 taaaaacggg accttcttga atgaacataa tccatgcctt gataccttcc acattttcga
     9061 tacacgaaac aagtgcggaa gcgtcgcgcg gatcaacttc aaactcgttt aaaagcgtat
     9121 cacttaaata aacggttgca gcgccatttt catccatgac aaagttttgc aaaatatatc
     9181 cagaaagttt taccgtattt ttcggtaatt catataattc tcggtaaagc gccggacgat
     9241 caaatggaaa tgtcactaaa tgcgcagata aacgtaacgt ctcttccgtt gtgcttggat
     9301 acaagaagcg cccagtatca ccaacaattc ccgcataaag gagtcttgca gcagtttcat
     9361 tcaaaattaa ctcatccgaa aacatttccc aaaaagcgac aatcatttca ctacaagaag
     9421 aagccgtcgt gtccacccaa agtaaatcac catacgcatc atcatttgga tggtggtcaa
     9481 tttttataag tgctttacca aggttaaaac gcccgtctga aatccgttct tggttcgcgg
     9541 tgtcacacac aatcacaagc gcatctttat aaatttcatc cgttatttcg tccactatac
     9601 caagaaattg gagcgacttt tcatcatttc caactgaata gacttttttc tcaggaaagc
     9661 tagcccggat aatttccgca agccccattt gcgatccgta tgcatctggg tcaggccgta
     9721 catgtctatg caaaataatc gtttcatatt gttttatttg ttgtaaaatc tcacttttca
     9781 ttgtttcgcc tctatttctt tttaacgttc catcatttga caagcgacaa tagcttttcc
     9841 ggtcaaaatt ccttctaagt aaagctctac atcaagctta ccggccttac gccccatctc
     9901 caaaattcgc ggtttaataa taattgtcgc gtccatttga acaggtttta ggaaatacat
     9961 cgttacattt tcaatcgcta cattccgttt tttcatagaa aatagttttt gctgtacgac
    10021 gtcacaaacc acttgtgtaa atacaccata cgataatgtt ccgagtgaat tagtcatttg
    10081 cgggctaact ttaaattcat aatctgcctc ttctccagta tctgcttttt cagaaagctg
    10141 attcgcaatc gtatcatcaa ttgtttcacc gacttgcggt tgtttttgaa tcatttgcat
    10201 agattttaga atatcctgtc tgctaacaat cccgattaat gttaagtcat ctttaacgac
    10261 tggaattact tcgatactct cccaaatcat catgtgcgcc accgaggcta cactcatttt
    10321 tggtcccaca gttaacggat ttttcgtcat tactcgttca attgaaatac ttggattttt
    10381 ttccagaata tccttacttg taaccatccc agtcagtcgc atcgctcggt taactacagg
    10441 aaatcgacta tgacctgtcg cttcttccat tttatgccaa tcttccactt tatcagacgt
    10501 agataaaaat gcagttgttt ctaatggggt caaaatatcc tccacaaata ctacttcttt
    10561 tttaattaat tggtcataaa tcgcgcggtt aatcatcgtt gcaactgtaa acgtatcata
    10621 cgaagtcgat aaaatgggca gttctttctc gtccgccaac cgtttcactt cgtcgtccgt
    10681 atcaaaccca ccagtaatca gtaccgcggc gccacgtttc aaagcaagtt catgagcgct
    10741 cactctattt ccgacaatta ataagtttcc tgcatcggta tagcgttcca tcgcttccac
    10801 tgtcatcgcc ccaataacaa acttattaag cgatttataa agccccgcac gacctcctag
    10861 cacttgccca tcaatcatat tcacaatctc agcaaaagtt aatttttcga tactatcttt
    10921 ttgcttccgt tcaattcgaa gtgttcccac tcgtttaata gtagaaacaa acccaatgat
    10981 ttctgcatct ttaatagccc gataagcagt tccctcgctt acagacaagt ttttcgcgat
    11041 ttttcgtaca gatatttttt ctccaactgc aagattttca atgtatttta aaatctgttc
    11101 atgttttgtg gccacgacac gttcacccat tcctattttg ttagatttcg ataccttccc
    11161 caatttcaag tacttttcca gttatcccct catcaagcga tgcaacaaat ttgtgcggat
    11221 cttgcgcaat caaaggaaac gtattgtaat gcattggaac aactaatttc gcttgtaaaa
    11281 accgtgccgc aatcgccgca tcttctggtc ccatggtaaa attatcccca atcggcaaga
    11341 aagcaacgtc tagcggattt aattcaccaa ttaatttcat atcagaaaac aaaccagtgt
    11401 cccctgcaaa ataaatattt ttatcttcta tcgtaaatac aatcccagtt gggaaaccaa
    11461 ggttaacaat gcgaccatct cgaaccgtct gcgatccgtg aaaagcttgc gtcaacttca
    11521 cttggccaaa actaaactgt cttttcccgc caatatgcat tggagcgata ttttcaagcc
    11581 catcctctac tgctaaaaaa gaagccaaat ccgcattaca gataacggtt gctccagaat
    11641 tcttagcaat ttcaactgta tcaccgacat gatcatcatg tccatgcgac agaacgataa
    11701 agtcaggcat ctgctcttcc gcttttaaat cacatttctc attaccagaa ataaatggat
    11761 ccacgagaat agttgtatcc ccagtaatta ttttaataca agactgacca tgaaatgaaa
    11821 tcttcatgtt aaaaaacttc cttcctgatt cattattcta tgtgtattat tgtaccacta
    11881 tttattataa actactatat aacacctcgt aaactaagag gtgtttatta gcaaaataat
    11941 tccttcgcat gttatcatga aatagaaatc aattggaaag aaggtacaat tatggaaaaa
    12001 aatatcgatg tcttacaaaa ttggctaaaa gaccaaggtg ctgaggtggc atttttaaca
    12061 gatccagaga acatcgctta tttctcgggt tatcatagtg agcctcatga gcgcgtgctt
    12121 ggcttagcag ttttcccaga tagtgaaccg tttttattta cgcccgctct tgaagtagaa
    12181 gatgtgcgcg gcggtgactg gacacaccct gcatacggat ataacgatac cgagaatcct
    12241 ttcaccatca ttgcagacga aatcaaaaaa cgcgttgcaa atccaagcaa atttgctatt
    12301 gagaaaaaac atatgagcgt agatcgctac gaacaattag gtggattatt ctccggcagc
    12361 tctttcattc cgattgaaca caaaattgag caaattcgtc tgattaaaac cgaagccgaa
    12421 ctaaaaatat taaaagaagc agccttatta gccgattacg ccgtacaagt tggtgtaaac
    12481 gaaatcgcag aaggtaaaac agaagcagaa atcgtggcga aaatcgaata cgaaatgaag
    12541 aaaaaaggcg taactgccat gtctttcgat acaatggtcc ttactggtaa aaacggtgcc
    12601 ctgccacatg gtactccagg cgaaacaaaa atcaaaaaag gcgatttagt tttatttgat
    12661 ttaggcgttg tccataaagg ctattgctct gatattacac gcacagtagc ttttggagat
    12721 atttccgatg aacagaaaaa gatttacgac actgttttag aagcgcaaat tgccgctgtc
    12781 gaaaaagtaa aagccggcgt aaaagcaagc gaaattgatt taactgctag aaatattatt
    12841 cgtgaagcag gttacggtga ttatttccca catcgtcttg gtcacggtct tggcgcgagt
    12901 gtccatgaat tcccttcgat tacagaaacg aacaatatgg aactgcaaga aaatatggta
    12961 tttacgattg aaccaggtat ttatgttccc ggtgttgccg gcgttcgtat agaagatgac
    13021 ctcgttgtca caaaagacgg cgtgcaagta ttaacggaat tcccaaaaac tttacaagta
    13081 atcgactaac aagaaaagcg aactttcctt tgagaaagtt cgcttttttt attaaattaa
    13141 ttctttgcta tccgtatagg gtaaatcaag tgaatctgca acagccttgt acgtaatgtg
    13201 accttggtat gtatttaatc cacgaagtaa gaatgggtca ttttgcacgg ctgcttttaa
    13261 gccttgatta gcaagtttca atccaaatgg taaagtggca ttagtaagcg ccaaagtgga
    13321 cgtccgcggt actgcacctg gcatatttgc aacagcataa tgaagtacac catatttttc
    13381 gtaggttgga ttatcgtgtg tggaaacgtg atctgttgtt tcaaaaatcc ctccttggtc
    13441 aatcgcgata tctacaagga cagatcccgg aatcatttgt ttaattacat gctctttgac
    13501 gagtttgggc gcttttgctc ctggaattaa tactgctcca ataaccaaat cagctttttt
    13561 cacagctgtt tcaatattaa aatcattcga cattaacgtt tggacttgat tgccaaaaat
    13621 atcgtccagt tcgcgcaatc gtttcaaatt catatcaaga atggtcacgt tggcacctaa
    13681 accagctgca attttcgctg catttgttcc agcgattccg ccaccaataa taaccacttc
    13741 acttttctct acacccggca ccccaccaag caagacaccc ataccaccat tcgttctttg
    13801 taaaaattgt gcgccaatct gagctgccat tcgcccagca acttcactca ttggcgaaag
    13861 tagtggcaac gtgtggtctg caagttctac tgtttcatac gctacactat ttactttact
    13921 ctccatcaaa gctttcgcaa gcgttggttc atttgccaaa tgtaaatatg tgaaaagtaa
    13981 tagtccttct ttaaagtatg tatactctga tgcaatcggt tcttttactt ttacaaccat
    14041 atctacatcc caagcttctt tagctgtttc aacaattttt gcccccgctt gcacaaaatc
    14101 agcgtcttga taattagagc caatgcccgc atctttttcc acgtatacag tatgacctgc
    14161 atttacgtat gaaaaaacac ttgccggagt cattgccacc ctattctcgt tatttttaat
    14221 ttcttttggt acgccgacta acatctaaat cactctcctt gatataggta taatagacta
    14281 taaaagattt tctacacccc catgctaaca caatatacct aagttgtaaa aaattaacta
    14341 actgaaattc aaacaaaagt tttagtaaaa ttagacgaaa tatttgtttc actataattt
    14401 atttttcatt ttatggttct tttaggaaaa agagggtaaa atataagtat agaaaataca
    14461 tattttgatt ggaggaatta ttatgttaca acaatacgaa agagttttag tagcagttga
    14521 tggatccaaa gaagcagaaa gagcattcca aaaagcaatt caagtggcta accgtaatga
    14581 cgcggcgctt ggtctggtac atgttatcga tacacgcgcg ttttcatctg tagccaatta
    14641 cgatacaagc atggcagaca aagctaccga atatgcagat gaattactta gtggctataa
    14701 agaagatgct ttaaaagccg gtgtaacaaa agtagaaagc tacattgagt atggttctcc
    14761 aaaaacagct attacaaaag aagcagc
//
LOCUS       DABQVC010000056        14634 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.056,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000056 DABQVC010000000
VERSION     DABQVC010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14634
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.056"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(70..813)
                     /locus_tag="IBJ56_001212"
     CDS             complement(70..813)
                     /locus_tag="IBJ56_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar isomerase domain-containing protein"
                     /protein_id="HAM3417471.1"
                     /translation="MINNYIDITVRLLENILDNEADYVKEAGAKVAESIENDGVIHLF
                     GCGHSHILTEEVFYRAGGLAAIHPILHEPLMLHEGAAASSVLERKNDYAKTFMAEEDI
                     RPGDIMIVLSTSGRNPVPIDVAEIAREKGAFVIVITSLQYSASQKSRHTSGKRLSDTG
                     DIVIDNGAVKGDAVLKSANFDIAFAPTSTVTGAVILQSIFAEAIETMVNDNFTPPVFI
                     SGNVENADAHNQALVDKYNERIPLLGMNL"
     gene            complement(814..1533)
                     /locus_tag="IBJ56_001213"
     CDS             complement(814..1533)
                     /locus_tag="IBJ56_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KDGP aldolase family protein"
                     /protein_id="HAM3417472.1"
                     /translation="MNKKKFENLPKWNNFALFNFLAKDKENSLEVMEAARGFAVPGIV
                     ATNYETAEEAANVVKELQTTAPVISVGLGGGGDWQNWRDVLHIARLAPNSHINQPIET
                     AGLTNDLLPETYTNALVRPTGKIGIVKLSSGDEITAEEAVDYCLSANIPSIKFMSIEG
                     TKYLDELVYLTKIAADKGIYGIEPAGGIGADNILEITTAIKSTGIPFYMPHIFGKTID
                     KATGRTKPEEIEKIFAALEGN"
     gene            complement(1493..2242)
                     /locus_tag="IBJ56_001214"
     CDS             complement(1493..2242)
                     /locus_tag="IBJ56_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HAM3417473.1"
                     /translation="MLYADENSFDIGAKITKTKPVLLPIGAVEAHGPHLPLGTDNILA
                     SEYSAKIAAETSGFVLPVLPYGQVWSLQDFPGSLTLSNETVTKVVVEIGESLYKQGFR
                     LFVPVSGHLGNMAALKDAARELYAKYPDMVILHIFYPNIQKLAMDVREGNANHHTYIH
                     ACEIETSLMLYLSPENADMSRAIDDPPILPIDADFTPTPWQNFTKTAVLGEATLATAE
                     KGEYLIEKTLKTCVELIKLEQEKIRKSTEME"
     gene            complement(2255..3247)
                     /locus_tag="IBJ56_001215"
     CDS             complement(2255..3247)
                     /locus_tag="IBJ56_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase"
                     /protein_id="HAM3417474.1"
                     /translation="MSFIRTFYGDIAPEQLGFTYSHEHIVCVPAYWQERDADDLLLDD
                     KEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFNKSFLWD
                     GKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEVENGLEGTPYKAGQVKFGTGYN
                     MITPLEEKTIRAVARAHHETKAPIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDR
                     NLDPYYHKQVAKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTARK
                     TYYKHYGHGPGLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTFKK"
     gene            complement(3317..4615)
                     /locus_tag="IBJ56_001216"
     CDS             complement(3317..4615)
                     /locus_tag="IBJ56_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HAM3417475.1"
                     /translation="MEIITWIANNFFGTPAILLGFIVLLGLLLQKKNLSQVISGTFKA
                     IIGFLIINAGAAVITGSLGIFEPMWKEVFGLETPPLAGFLGQEAFNAKFGSAVTLAMT
                     LGFLVNVLLARFTPFKYIYLTGHMMFWTTTIFAGITVQAVGGDIPFWGLVLFLAVIMG
                     LYWTLQPAITQPFLRKITGNDNVALGHTSSSVAILSALLGKVFGNKKNDAEHINLPKK
                     LEFLRDSNVITALTMGILFVVGAVILMVKKTPGAEKLIAEAGNQSFIVYSIVQSFTFA
                     AGIAIVLVGVRMFIGEIVPAFNGIATKLVPGAKPALDAPIVYPYAPNSVIIGFVGAFI
                     GAIIWLVVLGNTVGYVFVPTMIVLFFHGAVAGVFGNSTGGVRGALIGGFLTATVVAWG
                     QYIMVTFFINTTVPDTAMWAADSDMFILGPIVSMLAKLFF"
     gene            complement(4642..4914)
                     /locus_tag="IBJ56_001217"
     CDS             complement(4642..4914)
                     /locus_tag="IBJ56_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417476.1"
                     /translation="MKILAVCGLGQGTSLILRMNVETVLRDMGVDADVEHIDVSAARS
                     MNVDIIVTSQELAETLGTDTSAKVVIVNNYFDNAEIKTALSEAINS"
     gene            complement(4917..5351)
                     /locus_tag="IBJ56_001218"
     CDS             complement(4917..5351)
                     /locus_tag="IBJ56_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3417477.1"
                     /translation="MSFLDKELVNLHGSAKNADEAIVQAGELLVNAGYVSEQYVEKMV
                     ESYHENGAYFVIAPQIAIPHARPTDGVENSAVSLVVLKEGVNFGHAANDPVRLVFGLA
                     ATSSEAHLKVIQKIVSLLSNNDNIEKLIHSEDYQAIGELVEG"
     gene            complement(5544..7610)
                     /locus_tag="IBJ56_001219"
     CDS             complement(5544..7610)
                     /locus_tag="IBJ56_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3417478.1"
                     /translation="MVQFDARNMALLESLVVANVYLAPEKLQEELGISKRTLQYDVEK
                     INKELDNIGLDGIQSVRGQGYYLLEDEKSTIKEILGNREASHKVFSASERRIRILFFL
                     LVTDARVIIDTINECNEVSRNTSLQDIKQLKLALKQFNLELAYDRKNGNMVLGDERSI
                     RQFFIHYCMNNEEIATADQLLDLMKINPMIKNQELFPKLDTIFEILAVTEKKIGIRYT
                     DEVLERIGIMIFFFKERMKRNCYLNEQEEHEVESFEIAQEIYQQLQQSENFKINHAEI
                     TYLGKLLLGASRLNDDAAAEGKLDLIVEKIIAEFERLACVNFEDHRNLKKDLLLHLQP
                     AYYRLKFQIEWINPLRTDIKQSYSDVYEITKKSLEPLEDLLGETIPEDEIAYVTILFG
                     GYLSRKNNTLVERKKLLIVCSKGVGTSRMIERQLSQLLGERVEILEPISIREFEKGLY
                     APDFIVSTLPIMEPKAPVFIVSPILTEAQKQQLMKAIAPHILQKDSDARMLSSVLDVV
                     DQYAKVEDREKLAAKLKSVLFQVQSDSQLEKSPTLEELLPKERITFKESVADWREAIL
                     VASKSLQQEGYISRNYQHAMIENIEKLGPYIVIAPGIALPHASVDDGAYRVGMSLLRL
                     NQPVSFSSKAKDQVKLIIVLASIDSYTHINALSQLTNLIMKHHLLEQIEQATSAAEIA
                     AMLTIQ"
     gene            complement(7765..8952)
                     /gene="tuf"
                     /locus_tag="IBJ56_001220"
     CDS             complement(7765..8952)
                     /gene="tuf"
                     /locus_tag="IBJ56_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HAM3417479.1"
                     /translation="MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITTVLAKKGYADA
                     QAYDQIDGAPEERERGITISTAHVEYQTDSRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKCDMVDDEELLELVEMEIRDLLTE
                     YEFPGDDIPVIKGSALKALQGEADWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDV
                     FSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNI
                     GALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYF
                     RTTDVTGIVTLPEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSN
                     ISK"
     gene            complement(9061..11148)
                     /gene="fusA"
                     /locus_tag="IBJ56_001221"
     CDS             complement(9061..11148)
                     /gene="fusA"
                     /locus_tag="IBJ56_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HAM3417480.1"
                     /translation="MAREFSLEKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGA
                     VAVLDAQSGVEPQTETVWRQATTYGVPRVVFVNKMDKIGADFLYSVGTLHERLAANAH
                     PIQLPIGAEDTFEGIIDLIEMNALYYEDDLGNDPHIKEIPADLKDLADEYRGKLVEAV
                     AELDEELMMKYLEGEEITKEELKAGIRKGTLNVEFYPVVCGTAFKNKGVQPMLDAVLD
                     YLPAPTDVPAINGVLPDGEEAARHADDSEPFSSLAFKVMTDPYVGRLTFFRVYSGTLN
                     SGSYVQNSTKGKRERVGRILQMHANHREEISIVYAGDIAAAVGLKDTTTGDTLCDEKE
                     QIILESMEFPEPVIQVAIEPKSKADQDKMGQALAKLAEEDPTFRAETDQETGQTLISG
                     MGELHLDILVDRMRREFRVEANVGDPQVSYRETFRKSAQVEGKFVRQSGGRGQYGHVW
                     IEFGPNEEGKGFEFENAIVGGVVPREYIPAVQAGLEGALDNGVLAGYPLIDIKAKLYD
                     GSYHDVDSNEMAFKVAASMALRNAAKKCDPVILEPMMAVEVVIPEEYLGDIMGNITSR
                     RGRVDGMEARGNAQVVRAFVPLANMFGYATHLRSGTQGRGVYTMQFDHYEEVPKSIAE
                     EIIKANGGNNKED"
     gene            complement(11214..11684)
                     /gene="rpsG"
                     /locus_tag="IBJ56_001222"
     CDS             complement(11214..11684)
                     /gene="rpsG"
                     /locus_tag="IBJ56_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HAM3417481.1"
                     /translation="MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILY
                     SAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLR
                     WLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW"
     gene            complement(11715..12128)
                     /gene="rpsL"
                     /locus_tag="IBJ56_001223"
     CDS             complement(11715..12128)
                     /gene="rpsL"
                     /locus_tag="IBJ56_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HAM3417482.1"
                     /translation="MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKR
                     GVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKD
                     LPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK"
     gene            complement(12321..13718)
                     /locus_tag="IBJ56_001224"
     CDS             complement(12321..13718)
                     /locus_tag="IBJ56_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HAM3417483.1"
                     /translation="MKWDKLLNDKRRRESGVTRSKNTDVRSAFENDFQRIVMSASFRR
                     LQDKTQVFPLEKSDFVRTRLTHSMEVSTIAKSMGNMVTHTIQEENLDKDFTKDHADKI
                     PEILACAGLLHDMGNPPFGHFGEESIREWFRDNLATITYKNKSLAEILTSQMKEDFYY
                     FEGNAQVLRVVSKLHYLFDQYGLNLTFATLNAVIKYPVSSLKVNKKQIKSKKLGYFYA
                     DESLFNEITTATEALDNRHPLTYLLEVADDIAYLNADLEDGVKKGIVNITQILKGFEE
                     VEEHNKVTAACYNELKKKSERYEGQEESFIVQQWLASNVRGQLINRSLEVFYENYDAI
                     MAGTFNDSLIDASSAEQLVQILQSLSFTYIYQDKGIVESEIAGNEIISKLLETFIPAV
                     IYYDSEIPERQTAKDKRLLTLISDNYLGCYRKNAEGESETMKLYLRLLLVTDFICGMT
                     DSYAKDLYQRLNGLS"
     gene            complement(13734..14213)
                     /locus_tag="IBJ56_001225"
     CDS             complement(13734..14213)
                     /locus_tag="IBJ56_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3417484.1"
                     /translation="MTQLVFRNGTEQDTTLILRFITELAIHEGIEKDVVATESGLHKA
                     LFQEKSAEVIIAEYEGEPVGFALFFHNFSTLLGKKGLYLEDLYIIPEMRGKGFGTKFF
                     SYLSKLALSRDCGRFEWWCLNENKSGMDFYEKIGAEKMSEWTVHRLTKAEMKKLSNL"
     gene            14373..>14634
                     /locus_tag="IBJ56_001226"
     CDS             14373..>14634
                     /locus_tag="IBJ56_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall anchor protein"
                     /protein_id="HAM3417485.1"
                     /translation="MLQRRFWGIFCFAIFLFLFPTIGSAETSGDYEYTINGNEATITD
                     YTGQSTDITIPTTLGTNNEYTVTAIGNGAFKSKRLTNVTIPNT"
BASE COUNT         3968 a         3103 c         2822 g         4741 t
ORIGIN      
        1 tatatcgcaa tctatagaaa tactctaaca tagtaaaaaa gtctaggtgc taacctagac
       61 ttttctttct tataaattca ttccaagaag cggaattcgc tcattatatt tatcaacaag
      121 tgcttgatta tgtgcatcgg cattttcgac atttccacta ataaatactg gcggtgtgaa
      181 gttgtcgttt accattgttt cgattgcttc tgcaaaaata gattgcaaga tgactgcgcc
      241 cgttaccgtc gatgttgggg caaatgcgat atcgaagttt gccgatttta ggacggcatc
      301 acctttgaca gcaccgttat caattacaat gtcccctgta tcagataaac gttttccgga
      361 tgtgtggcgg gatttttggc tagcggagta ttggagcgaa gtaatgacga tgacaaatgc
      421 acctttttca cgggcaattt cagcaacatc aattggtaca gggtttcgtc cggacgtcga
      481 tagcacaatc atgatatcgc caggacggat atcttcctct gccataaatg ttttcgcata
      541 atcatttttt cgttccagta cagatgacgc cgcagctcct tcgtgaagca taagtggttc
      601 atgcaaaatc ggatgaatcg cagccagtcc acctgcgcgg taaaatactt cctctgttaa
      661 aatatgcgag tgaccgcaac caaataaatg gattaccccg tcgttttcaa tagattcggc
      721 taccttcgct cctgcttctt ttacataatc agcttcatta tcgagaatgt tttctaataa
      781 acgaactgta atatcgatat agttattaat catttaattc ccctccaaag ctgcaaaaat
      841 tttctcgatt tcttccggtt tcgttcggcc agttgctttg tcaattgttt ttccaaaaat
      901 atgcggcata taaaagggaa ttccggtgga cttgatggcg gttgttattt caagaatatt
      961 gtcagctcca attcctcccg ctggctcaat accgtaaatg cctttatcgg ccgcaatttt
     1021 tgttaagtaa actagttcat ctaaatattt cgtgccttca atgctcataa atttgatgga
     1081 cgggatgttg gcggatagac aataatcgac agcttcttca gcggtaattt cgtctccgga
     1141 agatagtttg acgatgccga ttttcccggt tggacgaaca agtgcattag tgtatgtttc
     1201 cggaagtaag tcatttgtta atcccgcggt ttcgattggc tggttaatat gactgtttgg
     1261 agccagacga gcaatatgaa gcacatcacg ccagttttgc cagtctccac cgccaccaag
     1321 accaacacta atgacggggg ctgttgtttg taattctttc accacatttg cggcttcttc
     1381 tgctgtttcg tagttcgttg caacgattcc cggaacggca aaaccgcgcg ccgcctccat
     1441 gacttccagg ctattttcct tatctttcgc taaaaaatta aatagcgcaa aattattcca
     1501 tttcggtaga ttttcgaatt ttttcttgtt caagttttat caactccaca catgttttta
     1561 acgtcttttc aatcaagtat tcgccttttt ctgctgttgc caaagttgct tctcccagaa
     1621 ccgctgtctt cgtgaagttt tgccatggtg ttggggtgaa atccgcatcg attggtaaaa
     1681 ttggcggatc atctatggcg cggctcatat cggcattttc tggggacaag tagagcatga
     1741 gagatgtttc gatttcacag gcatgaatat acgtatgatg gttagcgttt ccttcgcgca
     1801 cgtccattgc taatttttgg atattcgggt aaaaaatgtg caagataacc atatcaggat
     1861 attttgcata tagttcgcgc gctgcatctt ttagcgcagc catattgcca agatgtccac
     1921 tcactgggac aaacagacgg aatccttgtt tatatagact ttcaccaatc tctacaacta
     1981 ctttcgttac cgtttcattt gatagtgtta aacttcccgg gaaatcttgc aaactccaaa
     2041 cttggccgta tggcaaaacc ggaagcacga atccgctcgt ttccgccgct attttcgctg
     2101 aatattctga cgctaaaata ttgtctgtcc ctagtggcaa atgcggccca tgcgcttcga
     2161 ctgctcctat tggcaaaagg actggttttg ttttcgtgat tttcgcgcca atatcaaatg
     2221 aattttcatc tgcatataac acagatttcg cctcctattt tttaaaagta aaacatcttg
     2281 ctgggttatc cacgaagaat tttttaacta atttttctcc gtcaaagcct ttttcgtttg
     2341 cttcatcaat aaagcgtggc acccattttt tggcgatata ttcaagtcct ggtccgtgac
     2401 cataatgttt ataataagtt ttgcgtgctg tatcaccact aactaaaatt tgatcttcaa
     2461 agccttccga aactagatat agaatcgctg caatccgagc gctttctggt gcgtatttga
     2521 tttttgcgat gccatcaaat gacatgaatg cgcctgtttt ggcaacttgc ttgtgataat
     2581 acggatctag gttgcggtcc atatgaccaa tagaaaggta ttctaacggg atattttctt
     2641 gttttaaaat ctcgatttgt tctaaagcca tcgttcccgc ttctgtgtga gaatgaattg
     2701 gtgcttttgt ctcgtgatgt gctcttgcaa ccgcacgtat tgtcttttct tctaaaggtg
     2761 taatcatatt gtagccagtg ccaaatttca cctgaccagc cttatacggc gttccttcaa
     2821 gcccattttc gacttcattt acaacgaatt ccgttagttt gtctgtagta gtattttcaa
     2881 tccattcata gtaggtttca aaatccccga tgattggttt cagttctggt ttaatcttcc
     2941 cgtcccataa gaaacttttg ttaaagccag ctgttccaac gatttggatg cctgtttctt
     3001 tggaaatttg cgccacatcg agcacacgtc tgccgtaatc aaccgcggtt gcatcgacaa
     3061 ttgttttgcc tcctaaatcg gcgaaatctt gtacatcaag ttgtgatttt tctttatcat
     3121 ccaaaagtaa atcatcggca tctcgctctt gccagtaagc cggcacgcat acaatatgct
     3181 cgtgtgaata agtaaatccc agttgttcag gggcaatatc tccataaaaa gtacgaataa
     3241 aactcatttt ttaaaacttc ctttcaaaaa acctcttcct cttgaatgct agacaaggaa
     3301 gaggtttaga ttttacttaa aagaataact tcgctaacat gctgacaatt ggtccgagga
     3361 taaacatatc tgagtcggct gcccacattg ctgtatctgg aacagtcgta ttgataaaga
     3421 aggtaaccat aatatattgt ccccaagcaa caaccgtagc cgttaaaaat ccacctatca
     3481 aggctcctct caccccacca gttgagttac cgaatacacc agcaactgcc ccgtggaaga
     3541 aaagaacgat cattgttggc acaaacacgt agccaactgt atttccaagt actactaacc
     3601 agataatcgc tccaatgaac gcacctacga aaccgataat tacggagttt ggtgcatagg
     3661 gataaacgat tggcgcatct agtgcaggtt tcgcacccgg tacaagtttt gttgcaatac
     3721 cattgaaggc cggtacgatt tcaccgataa acatccgcac acctacaaga acgatggcga
     3781 taccagcggc aaacgtaaag gactgaacga tggagtatac gatgaagctt tgatttccag
     3841 cttctgcgat taatttttct gctcccggtg ttttcttcac catcagaatc actgcaccaa
     3901 ctacgaacag aatccccatt gtaagagctg taataacgtt agagtcacgt aggaactcta
     3961 attttttcgg taaattaata tgttctgcat cgtttttctt attcccaaat actttcccta
     4021 gcaaagcgga tagaatcgct acactggatg aagtatgtcc taacgcgacg ttgtcatttc
     4081 cagtaatttt acgtaagaat ggttgtgtaa tcgctggttg taatgtccag taaagaccca
     4141 taattactgc taagaagagt acaagacccc agaacggaat atccccgccg acagcttgca
     4201 cagtgattcc tgcaaaaatc gtcgttgtcc agaacatcat atgaccagtt aaataaatgt
     4261 acttaaatgg tgtaaatcgt gctaataata cgttgactaa aaatccgagt gtcatcgcaa
     4321 gtgttaccgc actaccaaat tttgcattaa aggcttcttg tcctaaaaag cctgcaagtg
     4381 gcggtgtttc aagcccgaat acttctttcc acattggttc aaaaatccca agggaaccag
     4441 taataacagc cgcaccagcg ttaataatta agaatccaat aatggctttg aacgttccgc
     4501 taatcacttg gcttaaattt ttcttctgta aaagtaaccc gagaagtacg ataaaaccta
     4561 aaagtatggc tggggttcca aaaaagttat tggcaatcca cgtaataatc tccatttttt
     4621 tcccaccttt ttttgtctta tttaactatt aattgcttca gataatgccg ttttaatttc
     4681 tgcgttgtca aaatagttgt tgacgatgac tactttggcg cttgtatctg ttccaagtgt
     4741 ttctgctaac tcttggctcg ttacaataat atccacattc atcgagcgcg cagctgatac
     4801 atcaatgtgc tccacgtctg catctactcc catgtcgcgt aaaactgtct ctacattcat
     4861 tcgtaaaatt aagcttgttc cttgcccaag tccacatact gctaaaattt tcatcgttat
     4921 ccctccacta attctccaat tgcttggtaa tcttctgaat gaatcaattt ttcaatatta
     4981 tcgttgttac taagcaagga gacgattttt tgaatgactt tcaaatgtgc ctcacttgaa
     5041 gttgctgcaa ggccgaatac taatcgtacg ggatcattcg cggcgtgtcc gaaattcacg
     5101 ccttctttta gtacgactag tgatactgca gagttttcca caccatcagt tggtcttgcg
     5161 tgcggaatgg ctatttgagg tgcaatgaca aagtacgcac cattttcatg ataagattcc
     5221 accatttttt ctacgtactg ctcgctcaca taacctgcat taactaataa ttctcctgct
     5281 tgcacgatag cttcgtcagc attcttagct gatccatgca gattcacaag ctctttatcc
     5341 aaaaaagaca tatctcttca tcccttctaa ctaattgata gcgctatcaa taacttacac
     5401 tcttattata gctgtagcgc aactgtttaa aaaagcccaa ttcctttctt ttcgaaagtg
     5461 caaaaaatag actgttacat tttgttgtta gcgagcatac aaaaagccag cgcggcatct
     5521 tggtgcccca ctggctttct tgcttattgt atcgttaaca ttgcggcaat ttccgctgct
     5581 gatgtcgctt gttcaatctg ctctagcaag tgatgtttca tgattaaatt agtgagttgg
     5641 ctcagcgcat taatatgtgt gtaggagtca atggaagcga gcacaataat taacttcact
     5701 tgatctttcg ctttacttga aaatgatact ggctgattta agcgcagtaa gctcattccg
     5761 actcggtatg ccccgtcatc cacagacgca tgtggcagtg caatccctgg cgcaataacg
     5821 atgtatggtc cgagtttctc aatattttca atcatcgcat gctgataatt tctcgaaatg
     5881 tagccttctt gttgcagcga tttcgaggca actaggatag cctcacgcca gtccgccaca
     5941 ctttctttaa aagtaattcg ttctttcggt aaaagttctt cgagtgttgg agatttttct
     6001 agttggctgt ctgattgcac ttggaacaat accgatttca gttttgccgc caatttctcg
     6061 cggtcttcca ctttggcata ttgatctact acatcaagca cagaagacaa catgcgcgca
     6121 tccgagtcct tttgcaaaat gtgcggggca atcgccttca tcagttgttg tttctgcgct
     6181 tctgtcaaaa ttggactaac gataaaaact ggtgcttttg gttccataat tggcaaagtc
     6241 gacacaataa agtctggtgc gtataaccct ttttcaaatt cacggatgga aattggttct
     6301 aatatctcta ctcgctcacc aagtaattgc gataattgcc gttcaatcat ccgcgacgtt
     6361 ccgacacctt tggagcaaac gattaagagt ttttttcgtt caactaaagt attatttttg
     6421 cgtgaaagat agccaccgaa caagattgtt acgtacgcta tttcatcctc tggaattgtt
     6481 tcaccaagta aatcttctag cggttcaagt gattttttcg taatctcgta cacatcactg
     6541 taactttgtt taatgtctgt ccttagcggg ttaatccact caatttggaa tttaagccga
     6601 tagtaggctg gttgtaaatg aagcaataaa tcttttttca aattgcgatg gtcttcaaaa
     6661 ttcacgcaag caagacgttc aaattcggcg atgatttttt caacgatgag atctaatttt
     6721 ccttcagcag ccgcatcatc attcaaacga ctcgccccaa gcaaaagttt acctaaataa
     6781 gtgatttccg catgattgat tttaaaattc tcactttgct gcaattgctg ataaatttcc
     6841 tgcgcaatct caaaagattc tacttcatgc tcttcttgtt catttaaata gcaattacgc
     6901 ttcattcgtt ctttaaagaa gaaaatcata ataccaatgc gctcgaggac ctcgtcggta
     6961 taacgaatcc cgattttttt ctccgttaca gctaaaattt cgaaaatcgt gtctaatttg
     7021 ggaaataact cctgattttt tatcatcgga ttaattttca ttaaatccag caactggtct
     7081 gcggttgcga tttcttcgtt attcatacaa tagtgaataa aaaattggcg aatactgcgc
     7141 tcatcaccga gaaccatatt gccattttta cggtcatacg caagttctaa attaaactgt
     7201 tttagcgcta attttaattg tttaatgtcc tgcaaacttg tattacgact gacttcattg
     7261 cattcattaa tcgtatcaat gattactcgc gcatctgtta cgagcagaaa aaataaaata
     7321 cggatgcgac gctcacttgc tgaaaagact ttgtggctcg cttccctatt tccaaggatt
     7381 tctttaattg tcgatttttc atcttctaat aaataatacc cttgtccacg aacagattga
     7441 ataccatcga gtcctatatt atctaattct ttattaattt tttccacatc atattgaagt
     7501 gttcgtttgg aaattcctag ttcttcttgt aatttctcgg gtgcaagata tacattcgcc
     7561 acaacgagtg attcgagcaa cgccatattt cgagcatcaa attgtaccac ttggcctacc
     7621 tccttgattt cggtctagaa ggtaaaaaga tatgtctact ttaaggttat gcgaaaatgt
     7681 gatatttttc aagttaattt ttatttcagg cacaaaaaaa ccgacaaagc caaatgactt
     7741 tgtcggtttg aatcgtatca ggtattattt gctgatgtta gaaacaacgc cagcgcctac
     7801 tgtacgtccg ccttcacgga tagagaattt agtaccgtct tcgatagcga ttggtgcaat
     7861 tagttcaact gcaagctcaa tgttatcacc aggcattacc atttcagtac cttctggaag
     7921 tgtaacaata ccagttacgt cagtagtacg gaaatagaat tgtgggcggt agttgttgaa
     7981 gaatggagtg tgacgtccac cttcttcttt agttaaaaca taagtttcag ctttgaagtt
     8041 agtgtgtgga gtaatcgaac ctggtttagc taatacttga ccacgttgga tatcttcacg
     8101 agcaacacca cgtagaagtg cgccaatgtt gtcgccagct tcagcgtagt ctagtaattt
     8161 acggaacatt tctactccag ttactactac ttttttgctt tcttcttcaa taccgataac
     8221 ttctacttcg tcaccaactt taacttgtcc acgttcaaca cgtccagttg caactgttcc
     8281 acgaccagtg attgagaata catcctcaac tggcatcatg aatggtttgt cagtatcacg
     8341 ttctggagtt ggaatgtaag aatctacagc ttccattaac tcgtcaattt tagcttccca
     8401 gtcagcttca ccttgaagtg ctttaagagc tgaacctttg attacaggaa tgtcatcgcc
     8461 agggaattca tattcagtta atagatcacg aatttccatt tcaactaatt ctagtaattc
     8521 ttcatcgtca accatgtcac atttgttcat gaatacaacg atgtatggaa caccaacttg
     8581 acgtgaaagt aagatatgtt cacgagtttg tggcattggg ccatcagcag cagatactac
     8641 taagatagct ccgtccattt gtgcagcacc agtgatcatg tttttaacgt aatcggcatg
     8701 tcctgggcag tcaacgtgtg catagtgacg gctgtcagtt tggtactcaa cgtgagcagt
     8761 agagattgtg ataccacgtt ctctttcttc cggagcacca tcaatttggt cataagcttg
     8821 tgcatcagca tagccttttt tagcaagtac agttgtaatt gcagcagtta aagttgtttt
     8881 accatggtca acgtgtccaa tagtaccaat gttaacatgg ggtttagagc ggtcaaattt
     8941 ttcttttgcc attttaaaat atcctcctcg ataattcgat aattattttt tacttagctt
     9001 aaatttaaac taagtaatac ttctaactaa agttatactt gatgttgcga aaaaaatcaa
     9061 ttaatcttct ttgttgtttc caccattagc tttaatgatt tcttcagcaa tagatttagg
     9121 aacttcttca tagtggtcaa attgcatagt gtatacacca cgaccttgcg tacctgaacg
     9181 aaggtgagtt gcataaccaa acatgtttgc aagtggtaca aatgcgcgaa caacttgagc
     9241 gttaccgcga gcttccatac catctacacg accacgacgg gaagtaatgt tacccatgat
     9301 atcaccaagg tattcttctg ggataacaac ctctacagcc atcataggct caaggattac
     9361 aggatcacat ttcttagcag cattacgtaa tgccattgaa gcagccactt tgaaggccat
     9421 ttcattggaa tcgacgtcat ggtaagatcc gtcgtaaagt tttgctttga tgtcaatcag
     9481 tgggtagcct gcaagtacac cattatctag tgcgccttca agacctgctt gtacagctgg
     9541 gatgtattca cgtggaacaa ccccaccaac gattgcattt tcaaattcaa atcctttacc
     9601 ttcttcgttt ggtccgaatt caatccaaac gtgaccatat tgtccacgtc caccggattg
     9661 acgtacgaat ttaccttcaa cttgagcaga tttacggaat gtttcacgat aagaaacttg
     9721 tggatcacca acgttagctt caacgcggaa ttcacgtctc atacggtcaa caaggatgtc
     9781 aaggtgaagt tcacccatac cggagataag agtttggcca gtttcttggt cagtttcagc
     9841 acggaaagtt ggatcttctt ccgctagttt cgcaagagct tgccccattt tatcttggtc
     9901 agctttcgat ttaggttcga tagcgacttg gataactggt tctgggaatt ccatggattc
     9961 taagataatt tgttcttttt catcacataa agtgtcccca gtagttgtat ctttaagtcc
    10021 tacggcagca gcgatgtcac cagcgtatac gatcgaaatc tcttcacggt gattagcgtg
    10081 catttgaagg atacgtccaa cacgttcacg tttaccttta gtcgagtttt gtacatatga
    10141 accggaattc aaagtaccgg aataaacacg gaagaaagtt aagcgtccaa cataagggtc
    10201 agtcataact ttgaatgcta gggaagagaa tggttctgaa tcatcagcgt gacgagcagc
    10261 ttcttctcca tcaggcaata cgccgttaat agctggaaca tctgttggtg ctggaaggta
    10321 atcaagtact gcatctaaca ttggttgaac acctttgttt ttgaatgctg taccacaaac
    10381 tacaggatag aactcaacgt taagtgttcc tttacggata ccagctttaa gttcttcttt
    10441 tgtaatttct tcgccttcta ggtatttcat cattagctct tcgtcaagtt cagcaactgc
    10501 ttccactaat ttaccgcggt attcgtctgc taagtctttc agatcagctg gaatttcttt
    10561 aatatgaggg tcatttccta aatcatcttc gtaatacaac gcgttcattt cgattaagtc
    10621 aatgatacct tcaaatgtat cttcggcccc gattgggagt tggattgggt gcgcgttggc
    10681 agccaaacgt tcatgcaaag tacctacaga atataggaag tctgcgccga ttttgtccat
    10741 tttgttgacg aatactacac gaggaacccc gtaagtagta gcttgacgcc aaactgtttc
    10801 tgtttgtggt tctacaccag attgtgcatc tagaaccgca acagcaccat caagtacacg
    10861 aagcgaacgt tcaacttcaa ctgtgaagtc tacgtgtcct ggtgtatcga taatgtttac
    10921 tcggtagcct ttccattgag ctgttgtcgc agcagaagtg atagtaatac cacgttcttg
    10981 ctcttgctcc atccagtcca tttgagaagc accttcatgg gtttcaccaa ttttgtgaat
    11041 acgccctgta tagaaaagga tacgttcagt agtggtagtt ttacccgcat caatgtgggc
    11101 catgatacca atattacgag tcttttctaa ggagaactct ctagccatgt tgtatttctc
    11161 cttccataaa acaatttttc aggcaatacg cctggaattt gtcagtgatt tttttaccaa
    11221 cgatagtgag cgaacgctct gttagcatca gccattttgt gtgtatcttc gcgtttctta
    11281 acagaagcac cagtattatt ggcagcatcc atgatttcgc gagcaacacg tacttccatt
    11341 gttttctctc cacgaaggcg agcataattt actaaccaac gaagaccaag agtagaacga
    11401 cggtcagcac gtacttcgat aggtacttga tagttagcac cacctacacg gcgagcttta
    11461 acttcaagaa gaggcataat gttcttcata gcttgttcaa atacttccat cggatcttta
    11521 ccagtttctt gtgcaatgat atcgaatgcg gaatatagga tagcttgaga ctttccacgt
    11581 tttccgtcaa ccatcatttt attaattaaa cgagttacta gtttcgaatt ataaatcgga
    11641 tctggcaaca cgtcacgttt agcaacagga cctttacgag gcatcggata tcctcctttc
    11701 atattttata agtattattt tttaggtttt ttcgtaccgt atttagaacg gctttgtcct
    11761 ctattttcaa caccagctgt atcaagcgct ccacgaacga tatgataacg tacccctggt
    11821 aaatctttta cacgtccacc acgaataaga acaacactat gttcttgtaa gttgtgacca
    11881 ataccaggaa tgtaagctgt tacttcaata ccattactca aacgtacacg ggcatattta
    11941 cgaagcgccg agttaggttt tttaggagtc atggtaccaa cacgagtaca tacgccacgt
    12001 ttttgcggag agttaacgtc tgttagttct cttttaaaac tgtttaggcc cttgttcaaa
    12061 gcaggtgatg tagatttttt aattttagat tgacgaggtt tgcgtactaa ttggttaatt
    12121 gtaggcatgg gataaattcc tccttccttg tttagtagtt ccacacatcc aggtggttca
    12181 ttttttcggt aaaataaaat ggctgtaagt tcaacctaca acgctgtttt attttcagac
    12241 ctctgtttat agtagaggca ccttgaatat agtaacacct tgacgttcgg atgtcaaggt
    12301 gttacttgaa atttagttaa ttagctaagt ccattcaaac gttgatataa atctttcgcg
    12361 tagctgtcgg tcatgccgca aatgaagtct gttacgagaa gtaatcgcaa gtacagtttc
    12421 attgtttcgc tttcgccttc tgcgtttttg cggtaacagc ctaggtagtt gtcggaaatc
    12481 aaggttagta ggcgtttatc tttggctgtt tggcgttctg gtatttcgct gtcgtagtaa
    12541 atcacagctg ggatgaacgt ttcgagcaat ttggagatga tttcgttgcc ggcgatttcg
    12601 gattcaacaa tgcctttatc ttggtaaatg tacgtgaatg ataggctttg taaaatttgt
    12661 acgagttgtt cggcgcttga agcatcgata agtgagtcgt tgaatgtgcc tgccatgatg
    12721 gcgtcgtagt tctcgtaaaa tacttcgagt gagcgattga ttaattggcc gcggacgttc
    12781 gatgcgagcc attgttgtac gatgaaactt tcttcttgcc cttcgtagcg ctcgcttttt
    12841 ttcttaagtt cgttgtagca cgcggcagtt actttattat gctcttctac ttcttcaaaa
    12901 ccttttaaga tttgcgtgat gttgacgata ccttttttca cgccgtcttc taggtcggca
    12961 tttaggtacg cgatgtcgtc tgccacttct agtaaataag tgagcggatg acggttatca
    13021 agcgcttctg ttgcagttgt tatttcatta aaaagtgatt catcggcata aaaatagcct
    13081 agttttttgc ttttgatttg ttttttattt acttttaagg aagaaactgg gtatttgatg
    13141 accgcattta aagtggcaaa tgttaggttt aagccgtatt ggtcgaaaag ataatgcagt
    13201 ttggaaacta cacgaagcac ttgcgcgtta ccttcaaagt aataaaagtc ttctttcatt
    13261 tgtgatgtta ggatttcagc taggctttta tttttgtaag tgatggttgc taaattgtcg
    13321 cggaaccact cacggatact ttcttcacca aagtgaccga acggcggatt gcccatatca
    13381 tgtaaaagtc ctgcacaagc aaggatttcc ggaattttat ccgcatgatc ttttgtaaaa
    13441 tctttgtcta agttttcttc ttgaatcgtg tgtgtaacca tgttccccat tgattttgcg
    13501 attgtactta cttccattga atgggttagt cgtgtacgca caaaatcact tttttctagc
    13561 gggaatactt gggttttatc ttgtaaacgg cgaaacgatg cactcataac gatacgctga
    13621 aaatcatttt cgaaagcgct acgtacgtcg gtgtttttcg aacgagtgac accggattcg
    13681 cggcggcgtt tatcatttaa tagtttatcc catttcattt aaatcccatc ctttcatagg
    13741 ttgcttagtt ttttcatttc ggctttagtg agcctatgta cggtccattc tgacattttc
    13801 tctgcgccaa ttttttcgta aaaatccatg cctgatttat tttcgtttag gcaccaccat
    13861 tcaaatctgc cgcaatcgcg tgataaagcg agtttggata aatagctgaa aaattttgtt
    13921 ccaaagcctt ttccgcgcat ttctggaatg atgtaaaggt cttctaggta taagcctttt
    13981 ttgccaagta atgtggaaaa gttatggaaa aagagtgcga aaccaactgg ctccccttcg
    14041 tattcagcga taattacttc ggcagatttt tcttgaaaaa gggctttgtg taggccggat
    14101 tcggttgcta ctacatcttt ttcaatgcct tcatgaattg caagttcggt aataaaacga
    14161 agaattaacg tcgtgtcttg ttctgtcccg tttcgaaata ctagttgtgt catatatctc
    14221 ttccttttcg ttgtcgtatt aatttaagta taagctagtg ctagacatgt atcaattaaa
    14281 aaaaacttat tccacacaga tatgaatata gaaaagttta gatgttttgt gtaagggaaa
    14341 atataaaaaa actcaagtaa gggggctttt ccgtgttaca aagaagattt tggggtattt
    14401 tttgttttgc catattcttg tttttatttc caactattgg ttctgccgaa acatctggtg
    14461 actatgaata tacaataaat ggaaatgaag ctaccattac tgattataca ggacagtcta
    14521 ctgatattac cattcctaca acacttggta ctaataatga atataccgtt actgctatcg
    14581 ggaatggcgc attcaaatcc aagagattaa ctaatgtaac gattcctaat acag
//
LOCUS       DABQVC010000057        14509 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.057,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000057 DABQVC010000000
VERSION     DABQVC010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14509
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.057"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            1..852
                     /locus_tag="IBJ56_001227"
     CDS             1..852
                     /locus_tag="IBJ56_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAM3417486.1"
                     /translation="MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAF
                     VSAATIYRLINKLGLNGIGELKIEIASSLRETNEEKDLNYDYPILESDTPYQIMTNLN
                     QIYKGTIDETLNNADPEELVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLV
                     NVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNP
                     LVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQ
                     KMNTELE"
     gene            971..1810
                     /locus_tag="IBJ56_001228"
     CDS             971..1810
                     /locus_tag="IBJ56_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3417487.1"
                     /translation="MTTQAIILDIDGTLLNDDKKISPETKKALITAQENGVKLILASG
                     RPTTGMHVYAEQLEMEKHHGLLVSYNGAKVVDCATSEELFNQALTVEEGKAVLEHMKQ
                     FEVKVMIDKEDYMYTNDVYDCYVPYRGEVINIVQYESRGGNFKLCEKDDLAAFLDYRL
                     NKILTAGDPAYMQENYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMG
                     IHAENVIAFGDGHNDITMVEYAGTGIAMQNAVPELKAAASSVTLSNNEDGIAHVLNSL
                     IPS"
     gene            complement(1837..2283)
                     /locus_tag="IBJ56_001229"
     CDS             complement(1837..2283)
                     /locus_tag="IBJ56_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010959077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX pyrophosphatase"
                     /protein_id="HAM3417488.1"
                     /translation="MRQPFQVLVIPFIKTEANYQFGVLHRTDADVWQFVAGGGEDEEA
                     ISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQ
                     VTLSLEHSELRWVSYESAIQLLEWDSNKTALYELNERLKNNDMKAM"
     gene            2399..3241
                     /locus_tag="IBJ56_001230"
     CDS             2399..3241
                     /locus_tag="IBJ56_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAM3417489.1"
                     /translation="MILSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVG
                     YRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQ
                     LDKIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPV
                     VDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAKKHGKSPAQIV
                     LRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYV
                     RSEI"
     gene            complement(3287..3532)
                     /locus_tag="IBJ56_001231"
     CDS             complement(3287..3532)
                     /locus_tag="IBJ56_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaL family protein"
                     /protein_id="HAM3417490.1"
                     /translation="MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQEKWHKQKVL
                     MRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK"
     gene            complement(3547..4143)
                     /gene="recR"
                     /locus_tag="IBJ56_001232"
     CDS             complement(3547..4143)
                     /gene="recR"
                     /locus_tag="IBJ56_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HAM3417491.1"
                     /translation="MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFA
                     KALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHG
                     LYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLL
                     KPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV"
     gene            complement(4252..4569)
                     /locus_tag="IBJ56_001233"
     CDS             complement(4252..4569)
                     /locus_tag="IBJ56_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HAM3417492.1"
                     /translation="MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTV
                     KATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNI
                     PGM"
     gene            complement(4599..6338)
                     /gene="dnaX"
                     /locus_tag="IBJ56_001234"
     CDS             complement(4599..6338)
                     /gene="dnaX"
                     /locus_tag="IBJ56_001234"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HAM3417493.1"
                     /translation="MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFS
                     GPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVE
                     EIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPH
                     KLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDAL
                     SLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGK
                     DPVRLVEDLLVFFRDVLLYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILN
                     TAQQQMRFSNHPGIYVEVALVQLTQASQSVAGGGNVPADAASGSDLSDLKRQMEQMHQ
                     EIQTLKNQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQ
                     LIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETIT
                     SSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDGDAEDGANPEAKKPAEDPFVAEA
                     AKLVGEDLLEIKD"
     gene            complement(6587..7051)
                     /locus_tag="IBJ56_001235"
     CDS             complement(6587..7051)
                     /locus_tag="IBJ56_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3284 domain-containing protein"
                     /protein_id="HAM3417494.1"
                     /translation="MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKY
                     QRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIET
                     EKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ"
     gene            complement(7069..7251)
                     /locus_tag="IBJ56_001236"
     CDS             complement(7069..7251)
                     /locus_tag="IBJ56_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3188 domain-containing protein"
                     /protein_id="HAM3417495.1"
                     /translation="MKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIG
                     CVFIVLKIRKDKKEKN"
     gene            complement(7254..7475)
                     /locus_tag="IBJ56_001237"
     CDS             complement(7254..7475)
                     /locus_tag="IBJ56_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417496.1"
                     /translation="MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNIE
                     DEEKAAKIAKETIKATEIGSVLYFQVSVG"
     gene            complement(7610..8974)
                     /locus_tag="IBJ56_001238"
     CDS             complement(7610..8974)
                     /locus_tag="IBJ56_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3417497.1"
                     /translation="MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSI
                     AVLLNAFFRDFPTDWGWTGFVEAMQPLIGINGYVYNGTLAIVSIIFAFSLGYNLSKAY
                     EVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDVATLPKEFAGIYGFFSLS
                     QVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVV
                     GIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVL
                     APVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSK
                     RADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGI
                     VGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEE
                     EMKA"
     gene            9415..9570
                     /locus_tag="IBJ56_001239"
     CDS             9415..9570
                     /locus_tag="IBJ56_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417498.1"
                     /translation="MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPKNASEQKKQDV
                     EKKTDDN"
     gene            complement(9602..10243)
                     /locus_tag="IBJ56_001240"
     CDS             complement(9602..10243)
                     /locus_tag="IBJ56_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417499.1"
                     /translation="MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEV
                     AYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPST
                     NKYYAGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYTYNPEETSNDDYI
                     VRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDEDKEMVIFSIK"
     gene            complement(10397..10663)
                     /gene="ffs"
                     /locus_tag="IBJ56_001241"
     ncRNA           complement(10397..10663)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="IBJ56_001241"
                     /product="signal recognition particle sRNA large type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01854"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01854"
     gene            complement(10940..12454)
                     /locus_tag="IBJ56_001242"
     CDS             complement(10940..12454)
                     /locus_tag="IBJ56_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HAM3417500.1"
                     /translation="MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETG
                     KAEESPTEIFEAVLSSIQAVMKNVNKEELAGISFSSAMHSLIMVGSNGELLTECITWA
                     DGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIK
                     SYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDFLPKVVPETYQLTG
                     VKKEYAELMGIPENLPFIVGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTNQFQI
                     DSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVP
                     PGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEA
                     VSAPDDIIYVTGGISAHDAWCKLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKD
                     LNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS"
     gene            complement(12567..13505)
                     /locus_tag="IBJ56_001243"
     CDS             complement(12567..13505)
                     /locus_tag="IBJ56_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3417501.1"
                     /translation="MKKLLSGLIIVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVN
                     QSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGW
                     IDSRAFTNVGKPTIADTVPALWNSKKAIITTKPKNTTATTYFFQKNSAGNWYEVRHFT
                     SHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDK
                     SYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGC
                     VAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN"
     gene            complement(13548..14495)
                     /locus_tag="IBJ56_001244"
     CDS             complement(13548..14495)
                     /locus_tag="IBJ56_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3417502.1"
                     /translation="MKKFHGLVLTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTD
                     TTENIITEEKPEPAVPTKDTTVTTSQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTA
                     TLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDSEDGKTTAVKLNYLVKEKTAQL
                     TITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQI
                     TAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATAKPADVTKVT
                     KDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK"
BASE COUNT         4322 a         3088 c         2427 g         4672 t
ORIGIN      
        1 atgaatattt taattaaaat acgcgaacta accaatttaa ccaatagtga aaaagaactt
       61 gcgaattata ttttagcgaa cccgaaaaaa acattacagt gcaaaccaaa agaattagct
      121 actgctgcct ttgtctccgc tgcaactatc taccgtttaa ttaacaaact aggactaaac
      181 ggaatcggtg aactgaaaat cgaaattgcc tcgagtctcc gtgaaacaaa tgaagaaaaa
      241 gatttaaatt acgattatcc tattttggaa tccgatacac cctaccaaat aatgaccaac
      301 ctaaaccaaa tatacaaagg aaccattgat gaaacattaa acaacgccga tccagaagaa
      361 cttgtcaaaa ttggtgaaaa attaattcaa gcgaaaacca ttgatgttta tgcggcttcc
      421 gccaatttat tttttgctca aaacttcaaa ttccaaatgc aggaaatcgg tgttttagtc
      481 aatgttcctg aagaagatta tatccaaagc ttatcggccg ccaacagcga tgaaaatcat
      541 attgccatcg tcgtctctta cggcggtcgg agtcggacgc ttcaaagagt cgtcaaaatc
      601 ttgtccgaaa acaatgtcga tattatttta attacatcta tgcaagacaa tcctttagtc
      661 gaatttgcca cacacaaaat ctacatggca tccgctgaga accattacaa caaagtctct
      721 tcgttctcaa cacgccaatc tttactaagc attttcgata cgctttattc catttatttt
      781 aatcaaaatt acgaaaaaaa cattcaatac aaaacgacta attaccaaaa aatgaacacc
      841 gaattggaat gatttttcaa aaacacagcc attttccttt caaattgaaa aaaagctctc
      901 aatatgcgcc acatctgatt ttttcttaat ttctagtgat acaataaaga aaaaaaggag
      961 ctaaacttac atgacaaccc aagcgattat tttagatatt gatggcactt tattgaacga
     1021 cgacaaaaaa atctcaccag aaacaaaaaa agcactcatc accgcgcaag agaatggtgt
     1081 taaacttatt ctcgcatctg gtagaccaac cacaggaatg cacgtatatg cggaacaatt
     1141 agaaatggaa aagcatcacg gtttgctcgt ttcatacaat ggcgctaaag tagttgattg
     1201 cgcgacaagt gaagagttat tcaaccaagc acttactgtt gaagaaggaa aagccgtttt
     1261 agaacacatg aaacaatttg aagtgaaagt aatgattgat aaagaggatt atatgtacac
     1321 gaatgatgta tatgactgct acgtacctta ccgcggcgaa gtaataaata tcgttcagta
     1381 cgaatctcgc ggtgggaatt tcaaactctg tgaaaaagat gatttagccg catttttaga
     1441 ttatcgtcta aataaaattc tcacagctgg cgacccggcc tatatgcaag aaaattatca
     1501 agcaatgatg gcccctttca aagatacact taattgtgtc ttcacagctg atttttactt
     1561 tgaattcaca gctcagggca ttgataaagc caaagcactt gataccgttt taacaccgat
     1621 gggcattcac gctgaaaatg ttatcgcatt cggagatgga cataatgata ttaccatggt
     1681 cgaatatgca ggaacaggaa tcgctatgca aaatgccgtc cctgaattaa aagccgcagc
     1741 aagctctgtt acattatcca ataatgaaga cggcattgcg cacgtgctaa acagtttaat
     1801 cccaagttaa gaaaaaaggc tgagtttcag ccttttttac attgccttca tatcattgtt
     1861 tttcaaccgt tcatttagct cataaagcgc cgttttatta ctatcccact ccaataactg
     1921 aatagcagac tcataagaaa cccagcgcaa ctcgctatgc tctaaagata atgtaacctg
     1981 atatgaacaa ctcgttaaat caatggcaaa acaatattct ggaacaacat atggtttgtt
     2041 aaatgagaaa tgaaaattag ggatggatgc atgtgaatcc aagctataca ttttaacatc
     2101 gacatccaaa ttcaactctt ctatactttc acgtttagca gtctctgaaa tagcctcttc
     2161 atcttctcct ccaccagcta caaactgcca aacatctgca tccgttctat gtaaaacacc
     2221 aaactgataa tttgcttccg ttttaataaa cggtataact aaaacttgaa aaggttgtct
     2281 cattcactca cgtccttttg gaatttataa aaaaatcgca tttctatcct tcattctaca
     2341 gaaattctcc attttctggt atgcttaagt taataaacta aagtaggagg taaatgaaat
     2401 gatactttct ttctcggata catacagact gaacaatgga attgaaatgc ctagacatgg
     2461 ttttggggtc tacaagctaa cggatgaagc gcgtatgcgt actgcgctgg aaaccgcggt
     2521 ggatgtcggg tatcgcttgt ttgatacggc ttcattttac cataatgaaa aagagcttgg
     2581 agactttttt gcgtcaagtg gcttgaaaag agatgaattt ttcgtaacaa caaagatgtg
     2641 gaatacagag caaggttacg atgaaacgct tcgggctttt gaaaaatcgc agaaaaaact
     2701 acaattggac aaaattgatt tatatttagt ccattggcca aaacaagata ctttttttga
     2761 cacttggcgc gctgtggaaa aattatatga cgagggactt gttcgcgcaa ttggtgtaag
     2821 taactttgaa gcgcatcatc tggaccgcct gcgtacaagt gccaatgtgc ttccagtagt
     2881 agatcaactc gaaacgcatc cgcactttcc gaatcatctt ttacaccgct atttagaaga
     2941 gctacatatc gttcaccaag cttggagccc acttggccga ggtggcgttt tacaagagca
     3001 aatccttatt gacctagcga aaaaacacgg aaaatcacct gctcaaatcg tccttcgttg
     3061 gcatttacaa aataatatct ccattattcc aaaatcagaa acaccttcaa gaattagaga
     3121 aaatgcagct atttatgatt ttgaattgtc agaagcagat atgcgccaag tcgagcgttt
     3181 aaatactggt gaacgtgtga gccacgcacc agacgtaatg tatgtaagat cagaaattta
     3241 gcctaaaata aaaatctact aaaccaattt ggcttagtag atttttttat ttgtttttta
     3301 attgtcttgt acgtgcttct ttgaaaaggt aaaaatagcg agcttctgct ttcttttcct
     3361 catattctaa attaggatca tattcaaaac ttttacgcat tagaactttt tgtttgtgcc
     3421 acttttcttg cgtgacttca atcaattcca tcagataagc atcataggat ttgtgtagtt
     3481 taccaatctt cttgtttttc ttccgaccaa acttattgct tctggattcc attttatcac
     3541 ctctgattat acttctcttc gtccttccat tgcttttgag agcgtcactt catccgcata
     3601 ttccaagtct ccgccaactg gaaggccatg cgctattcta gttactttta tgcctgaagg
     3661 ttttaataag cgcgaaatat acatcgccgt ggcttctcct tcaacattag ggttggttgc
     3721 taaaataact tcttcaatcg tgtcatcttg caaacgtttc agcaaatcag gaatgttaat
     3781 atcttctggt ccaattccat ccattggcga aattgttcca tgaagtacat ggtataagcc
     3841 atgaaaatca cgcatttttt ccattgcaat gacatctttg gattcttgta ctacacagat
     3901 aacacttcga tcgcgtgacg tatcagcgca aatataacat ggatccttat ctgtaatgtg
     3961 accacaaacg gaacaaaagc ttaggtttcg cttcgcatca acaagggctt ttgcaaaatc
     4021 tagcacatcg tcttctttca tatctaacac ataaaaagct agtcgagctg ccgattttgg
     4081 tccaattcct ggtaatttca taaaactatc tattaatttc gttatcggct caggataatg
     4141 cataattcgt cttcctctca ccttcaaaat acaaatgttt cacgtggaac attctattga
     4201 aaaatagttg agactcttgt aaataagcca agagtctcaa accaaacaat attacattcc
     4261 aggaatattt aatccttgtg tgaatttacc cattgtttgt gaagttgtat cttcaatttg
     4321 ttttaataca tcatttgttg ctgcaagtac taaatcttgt agcatttcga tgtcttctgg
     4381 atcaactact tcttcgttta taacaacatc agtaatgacg cgtttaccag tagcttttac
     4441 tgtaaccatt ccaccaccag cagttccagt gaactcttga gcttctaaat cagcttgagc
     4501 tttcgccatt tccttttgca ttttttgcat ttgtttcatc ataccttgca tatttcccat
     4561 tccacgcatg aataatctcc tctttcttct attgtttttt aatctttaat ttcaagcaaa
     4621 tcttcaccaa cgagttttgc ggcttctgca acaaaaggat cttccgctgg ttttttagct
     4681 tctggatttg cgccgtcctc cgcatcgccg tcgctaccat gactatgcag gaaattctct
     4741 cttacgtcag cccattgatc ttctgggata ccaataaaag tataatttac ttgagtcagt
     4801 cgggcaatac tcgatgtgat ggtttcaaca aagttcggat tatccatcgc catttgacag
     4861 tgaatctcat gcttaaattt taacacaaaa gtgtcctgag atgcagccac aggttctgcg
     4921 tcatttaaaa gtgctgcttg agatgccatc aacattgata ataactcgcc ccaacaacca
     4981 cggattaact gtaaattctc tttcttagcc tcacctagca catggttgat tttaccaata
     5041 ggcgctttaa attgcttgcc gttgttgatt gcttttttag aaccaccgcg attttgggtt
     5101 ggtttatcgg ctggcgctgc tccagccccg ctggcaattt gatttttcag cgtttgtatc
     5161 tcttgatgca tttgctccat ttgacgtttt aagtcagaga ggtcgcttcc agaagctgca
     5221 tctgctggca cattcccgcc acctgcaact gattgactcg cctgagttaa ctgaacaagc
     5281 gccacttcca cataaatacc cggatgattc gagaaacgca tttgttgctg agctgtattt
     5341 aaaattttca cgaactcata cactttaagt gaatctgctc gttttgccaa agcaacaaaa
     5401 tcatcatcaa tcaaagctcg ttccagtgtt tcttccagat tcggcgcttt ttgatacagc
     5461 agcacatctc taaagaatac gagtaaatct tccactaagc gaaccgggtc tttcccttct
     5521 gctagcagtg ctgtcagcgt tgaaatcgct tctgctgcat cgccgtcaaa cgctgcactt
     5581 actagttttg taaggagatt ttgagcaacc gaacctgtta tttctagcgc gtcttccact
     5641 gtaacttctt ctgacccgta agatataact tgatcgagca aactaagcgc atcacgcatt
     5701 ccaccttcag ccgcacgcgc aacaatcatc aacgcttttt catcataagg gattttttct
     5761 tcttccaaaa taaatttcaa acgaccaata atatcttgtg tcgtgattcg tttaaaatca
     5821 aaccgttgta ctctcgaaat aatcgttagc ggtaacttat gcggttctgt tgttgccaaa
     5881 ataaaaatga catgtttcgg cggttcttcc agcgttttta gtagcgcatt aaacgctccc
     5941 gtcgacaaca tatgcacttc atcgataata tatactttat atttcgccac agttggcgca
     6001 tattttactt tttcccggat atctcgaatt tcttcaaccc cgttattact ggcagcatcg
     6061 atttcaagaa catctggtat agaaccgtcc gtcgtacctt tacaaatctc acattcattg
     6121 caaggctccc cgtcatggcc gtgttcacag ttaatcgcct tcgcaaaaat tttcgccgca
     6181 ctagtcttcc ccgtcccccg aggcccagaa aataaataag cgtgcgaagt tttattttgc
     6241 acaatggcat ttttaagcgt tttcgtcaca tgttcctgtc caacaacatc ctgaaacgac
     6301 tgcggccgaa aaacccgata caaagcctga tacgccatct gccactctcc ttcacctaaa
     6361 accattttag tagttttatt ataacgtatt gttgaagaag tttcaaaacg ttgtttgttt
     6421 tgatctactt cttcaatata aatctgagca aagcgatgat ttaatcctta ccagaagttt
     6481 caaaacgtcc tgagccgggc tagcttcaaa aaccaccacc accaaaaatc aaaaatcaaa
     6541 ccccaaaaaa agaaccagac ccccgaaaaa gcccgattcc aaactcttac tgttcacttt
     6601 tagcagccaa tttctcctgc ttctgcttac tctcattaat aaccgaaagc tcaatcgatt
     6661 tcagcaagtt ttttacacgt tttttacgga agaagccaaa cataaaacca acaataatat
     6721 tattcatttt atttaacgct ttttccgttt cgattaattc gttataggtc acttcgcatg
     6781 tagtttcgct agtggatttt atcgtatacg tcgtcgtatg agtgttcaca cggctgctcg
     6841 tttcgaattg ataaagttcg ttaggttgca ctttaacaat ttttgttgta gcaagtgcgc
     6901 cattagacat cgtacgttga tatttatatc cttctaactt tcgtacttga agcgtcttac
     6961 cagtggcatt ttttacatca tagattgctg agctaactag tgtatcaaag cattcttttt
     7021 gggatatata taatttctgt gtgacattca ctttttaatc gactccttct aattcttttc
     7081 tttcttatct ttacggattt ttagcacgat gaaaacacag ccgattaaaa caaccgcaag
     7141 tcctgtaact agaagaggta cactagccat cccatctttt ccataagagg gactaaacat
     7201 aataataata agacctatac taataagaaa tagtgcatta acaattttca ttttcaaccc
     7261 acgctaactt ggaaatagag tacagaacct atttcagttg cttttatagt ttctttggcg
     7321 atttttgctg ccttttcttc gtcttcaata tttgtttcaa aagtaagttt catacctttt
     7381 tcgtctattt ttttaaaagt tacaccgtct ttatcatatg tttcaagtaa ttcagtaatg
     7441 taatctcgct tcattggaca attaagaata atcatttaaa aaaacctcct tttctatagt
     7501 ttaacgttat ctttcgcttc ttgcaatgaa taaaaatggt gcaggaattc ctacatgata
     7561 tactggctag gcacaattta gctgcaccta gccagaaact tattattttc taagctttca
     7621 tctcttcttc tggtacacca acgcgatttg cggtaataac aaatggtacc caaatcaaga
     7681 acgcgacgac catatttatg agtgaaatta ctggtgccat ccaatctccc ccggttgcta
     7741 agaaggaatt cagaagtggc ggcattaccc aaactactgc aattttaact gggccgacaa
     7801 tgccaagtgt tgttgcaaag taagcgattg ttaccattac cattggcgcg ataaggaatg
     7861 gtattaagta aattgtattt aatacgatcg gtaaaccaaa catgattggt tcgttaatat
     7921 taaatatacc tggtgcaaga gacaatttcg caactgttcg tgcatccgct cgtttcgaga
     7981 acattagtaa tgcgataatc agtacaagcg taccgcctga tccacccatc catacatacg
     8041 catcgaaaga accacgtacc cattcgaatg gtaatttagc gccttcttgt gccgcactaa
     8101 tgttttgtag ttgtgctgta ccccaaagtg attctagaac cggagcaagt acgttcggac
     8161 catgaatccc gaagaaccat agtagttgta ctaagaaagt aactagtaaa acagctccgt
     8221 acccttgcga aagtgataat aacggctctt gaattgtttt ggaaatccaa gtaataacgt
     8281 ccatatttgt gattttgaag aatgcccagt caataatacc aacaacataa agtgcaacta
     8341 acgcaggaat aatcgccgcg aaagctttac ttacagccgg tggaacagaa tctggcattt
     8401 tgataataat atttctgcgc attaatttcg cataaataat agttgatata aaaccgaaaa
     8461 tcattgcggt aaacaagccg gtaccattta cttggcttag gctaaagaat ccgtaaattc
     8521 cagcaaattc ttttggtaaa gtagctacat cgaaatttgc attagaagcc gcaatcgcag
     8581 cttttactgc atctaagctt acagtaacag ttaagttcat aacaaaagca gcaagagaaa
     8641 ctagcccccc agctaatcga tccacttcat atgcttttga taaattatac cctagtgaaa
     8701 aggcaaaaat aattgaaaca attgctaatg tcccattgta tacatatcca ttaatcccga
     8761 taagtggttg catcgcttcc acaaatcctg tccatcccca gtcagttgga aaatccctaa
     8821 aaaacgcatt taaaagtact gcaattgacc cagccatagt gattggcatt gttgaaataa
     8881 aagcatcacg taatgcaact agatgttttt gtgaaccaat tttcgctgct actggcacaa
     8941 aatacttttc caaaaatgct gttaatccat tcatatttta tcctcccgta aaccttttta
     9001 tttaacactc atcttttaaa caaaatataa tttctatgta taaactccct ttaagtttat
     9061 cagctatatc tgtttacttt gtcctagtaa tccccattac taaaacaaac cagatggaat
     9121 ctttgcatga cctcgtgaaa ttttgggagc cctcctctcc gcttcatgat aaggcttaca
     9181 tttagattca ccttaatcta ttgcaatttc cgtgccaagt actaaatttg gaaaaaacat
     9241 cctttaatct cttgaaagcc ttgtctttct tgcctttaaa cttgtattac acacatacag
     9301 aaaaaaactg tgtaagtaag cgttaacatt acacagttta ctaatttatc cattcttctt
     9361 tctgtgttat aatgagcata agctaagtaa taccaacaat tcgaggtgat aaatatggca
     9421 gtcaaacgag atatgccgga agagtcgaaa aatagtaaag ttgtgaaaaa agagcatttt
     9481 tcgattgtgt ttcctgatga tataaaagaa ccaaaaaatg cgagtgaaca aaaaaagcaa
     9541 gatgttgaaa agaaaacaga tgataattaa taaaaaagag catccgcggg gatgctcttt
     9601 tttatttaat agagaagata accatttctt tatcctcatc aattcggaca tttacgtcca
     9661 tgcctaattt atctttaaaa agtgccgtaa tatttagata gtcatcatag ctaccgatat
     9721 cacttttttc gtatccttgt agaattgtcg gcttgatacg cacaatgtaa tcatcatttg
     9781 atgtttcttc aggattataa gtatagattt tcttaccatt cttatcaaaa aagtcatatg
     9841 ttgcatagga ttcattgttt gtgatataca catctttttg tgtaacataa gcattatcgg
     9901 ccacgctgta gtcaatcaaa cctgcgtaat atttattggt agatggttca ttaatttcat
     9961 attgtttata agctagtcgg aataagtaat caatattgta gtaactattc acgcggaaat
    10021 agagattttt atctttggat tttttatcta cgccaatatc tgtcgcacta attgggaaga
    10081 cttcatataa tttgccgtct atttcgtaag ctacttcata cttatcaaac acttcttggc
    10141 gctgaaaaaa gccaaacata attgctaaga ttacgataat tcctacgaaa actgcgacga
    10201 ttagagcggg cagccatttc ttttttgatt ttagttgttg cattattttc atcctttgtc
    10261 atgaattgct ttactatttt atattgtacc agtttatgaa tcattataca ttatttttct
    10321 gaggataggg ctgatttgta gaaaaaagac tactctgcgc taagcaaaat agtcttttat
    10381 atatttaaaa ttagtgtcgc gcacctcaca tcgacatgca atcatctgcg ttaccctgat
    10441 agttagctcg ggccaggcga cctcgcggca catgagaagc actgcttaat gctgcttcct
    10501 tccggacctg acatggttca caggttccca ttgcgcaaga cccaaccttc aacaccactt
    10561 gtcaagggca gaccaaacaa ttacgatgcc tcaaatgagg aattcaaccc cgctagagcg
    10621 gattgcgggt tacagggcgc cgctacctcc ccgtctagca cgacaaattt gctaccaata
    10681 attaaatgcc aaataaaaat tatttagcgc aaactctgaa aagagctcaa ttactagtgt
    10741 acctttttca tctaaaaagt gcaagcggga acacggaaat attttttaac gtaagtaaac
    10801 actcatgatt gctgcgataa tcgtaccaac tacacaaata cctactaatg ttaaagctat
    10861 ccatactatt tttttattca tggttttctc cccctcgtca tcacttttct tttagtgatt
    10921 atatcatgaa atccaaaatt tagctgttaa tatcaaactt cttttgccaa ctatttaatt
    10981 ggctgtagct cgacattaac tgtgtggtta cttgtttaaa aatcagacgt aattccgcgt
    11041 atttaaggac gttctcactt ggatgatata ccgctttaat aggcagtgta tgttttagat
    11101 taagatcctt caaaatccct agtgatcgca taccaataat cgctgctcct aaacttgagc
    11161 cttctatcgt atgcggaaca cgtatttctc ggttcaaaat atccgccaga agtttacacc
    11221 aagcatcatg cgctgaaatc ccgcctgtga cataaataat atcatctgga gccgaaaccg
    11281 cctcataaac ttctgcaaga ttaaaagcaa caccttccaa aatcgcacga ataaaatggg
    11341 cttttgtatg attaatcgtc agcccaacaa aacctcctcg aatatcatta gtccaaaatg
    11401 gtgcacgctc gcctaacaaa tatggctgga ataaaagacc cgcagcgccc ggaggaactt
    11461 cctctatttt tgcaataaag cttgcgaaat cacgcctact aatttcagct tcagagccaa
    11521 attgttgcaa accccactcg actacttttc caccattatt cactgcgccg cctgcgataa
    11581 agtagccatc accagctccg tagcaaaatg tccgaccacg agaatctatt tggaattgat
    11641 tggtaagttt gcgaactgca ccacttgtgc ctactgtaat cgtaacatca ttttggccgg
    11701 tcgcttgaat accaatatta gctagcgccc cgtcactccc ccctacaatg aatggtaaat
    11761 tttctgggat tcccattaat tcagcatatt cttttttcac gccagttaat tgatatgttt
    11821 ctggtacaac ttttggcaaa aaatcaggag tcaatttgac aatttccatt gcttcaaatt
    11881 cccagtcgtg ctccataatg ttatatagtc cagtccccga tgctaacgat tcatccatca
    11941 cccaaacacc aaataatcgg tataaaatat aggatttaat atcaacaaat ttttctgtgc
    12001 gtttaaataa agtaggcttt tcctccttca accagcaaat tttggcaaag gggctcatag
    12061 ggtgtatcgg cgttcctgtg gcctcataca gttggaataa gtaattatcc ctttttactt
    12121 tttcaagcgt ctcactgctt cgtccgtccg cccaagtgat acattcagtc aaaagctctc
    12181 cattacttcc aaccataatt aaactatgca tcgcagaact aaacgaaatc cccgctaatt
    12241 cttctttatt cacatttttc atcacagctt gaatagatga taaaactgct tcgaaaattt
    12301 ccgtggggct ctcttccgct ttcccagttt catccgttat tagttcataa tgcgtcgcct
    12361 gccggaaaat cacttctcct cgttgattaa aaagtactgc ctttgtgctt gaagttccaa
    12421 tgtctacgcc cattatgtat ggtttactcg tcaaacaatt caccccgcgt tttcgtttct
    12481 ttttattata cgtcaaatag aagaaaattt ggggctaggc tacttagctt ttttgccaaa
    12541 caaaaaagct agagaaattc tctagcttaa tttataccgt aaaaagtttt tattcggctt
    12601 tcttcaccta acacaataag tgtattttta tccgcgaatt ttagcacttc ttttgtattg
    12661 gcttcacttt gagcgacgca acctaatgtg taattgtatt tcggtgaatc aacatggtaa
    12721 aacacagccg atcctttacc ttttacacgt ttagcgttgt atttcacttc cattccgtat
    12781 ttgtactgcg gaatcttcat tttttcatct gcagaactag aggaattgcg ttcttgccaa
    12841 gtgttatagg atttgtcgtt agagttagaa atccaataac ttctattagt aatcgctctg
    12901 aatgtcagct tcgtaccagg attacccttt tgcccaaatg caatgcctgt acgataaacg
    12961 ccaactggag ttccagaact tttttcagag aactttggat caaatcccca tttgccaata
    13021 tgactggtaa aatgacgaac ttcataccaa tttcctgcac tatttttttg gaaaaagtag
    13081 gttgttgcgg tagtattctt tggttttgtg gtgatgattg cctttttact gttccaaaga
    13141 gctggaacgg tgtcagcaat tgttggtttg ccgacattcg taaaggcacg cgagtcaatc
    13201 catccgattg tagtatttcc tagcttacaa taataccatt tagctcttgc tgtttttcct
    13261 tcgcgcgtaa taatcaacgt cttcttgtcg tatttcttag ctgaaccgag gtacttaaca
    13321 ctactactcg ttttgtacat cttgctatta ataccatcat ttcgttttga ctgatttact
    13381 acccctttta gattaactgc tttgtcataa atgatttttt cgtaggatgc tgcttcggca
    13441 ttaaaggagt gaccaagtag gctaaccatt aaaacaataa ttaaaccgct taataacttc
    13501 ttcattattc gctccttatt tttgagttat tccctatagc aattagttta ttttttacgt
    13561 ttcctaagta ataacactgc cacaagaata actataacac ccgctaccac gaaaatccat
    13621 tctgtacctt tgtcacctgt gcttggcaaa tctgttttgt catcttttgt aacttttgta
    13681 acatcagcag gttttgctgt tgcgcttttg accgcgttct ttgtttcgat tttcttcact
    13741 ttatctggag ctgttacgac tgcttcattt tgttttttcg ctgggacttg ataggttact
    13801 tcttcactat aattacccga ttcatcaaaa gcatatgcag taatttgttt tggtgttgtc
    13861 gcccattctg cataaaaata accatcttta tccgcagttg ttgttccttc tccaaagttt
    13921 tcatctgccg gagaactcat atatacacta gcgaatggtt ttgttttacc tgtgaaaatt
    13981 tttgtttcta aatcaaaatt catatctgta atagtcagtt gggccgtttt ttctttgact
    14041 aagtaattga gtttgactgc tgttgttttg ccgtcttcac tatctccaag gagcgtgact
    14101 tcttggatac ctgtttgtgc agtacttagt ttagaattgg ctgctaagcg ataattggtt
    14161 agttttgtat cggtgtaatc agttaatgtt gcggtgaaat ctttgagatc aatcttacta
    14221 ttttgttcat acgagtaaac ttcttgagaa tcggtaatat ctatcgttgt ttgaactttg
    14281 cttttttgcg atgttgttac agtcgtgtct tttgtcggta ctgctggttc tggcttttct
    14341 tcagtaatta tgttttcagt agtatctgtt gttttttctt ctgtaggtgt tgaattgtta
    14401 ccattttcat ttgtttcagc gcttgctgcc aatgagaatg gaatgattag acaagttact
    14461 aacgcagtaa gcactagccc gtggaatttt ttcataataa attcccctt
//
LOCUS       DABQVC010000058        14476 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.058,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000058 DABQVC010000000
VERSION     DABQVC010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14476
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.058"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..953
                     /gene="pta"
                     /locus_tag="IBJ56_001245"
     CDS             <1..953
                     /gene="pta"
                     /locus_tag="IBJ56_001245"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HAM3417503.1"
                     /translation="GQVTGKNVRIVLPEGTDERIVGAAARLQKENIVKPILLGNKAEI
                     EAKAKEIGVSVEGIAIHEPATDPLFDELVAAFVERRKGKATEEAARKMLVDPNYFGTM
                     LVYTGKAEGLVSGAAHSTGDTVRPALQIIKTKPGVSKVAGAMIMVRGEERYLFSDVAI
                     NIAPVAADLAENAIVSAETAEIFGIDPRVAMLSFSTKGSAKSDETEKVVEATALAKEK
                     APELTLDGEFQFDAAFVPTVAEKKAPGSVIKGDANVFIFPSLEAGNIGYKIAQRLGNF
                     EAVGPILQGLNAPVNDLSRGCNTDDVYNLTLITAAQAVNK"
     gene            complement(992..1558)
                     /gene="pdxT"
                     /locus_tag="IBJ56_001246"
     CDS             complement(992..1558)
                     /gene="pdxT"
                     /locus_tag="IBJ56_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HAM3417504.1"
                     /translation="MKKIGVLAIQGAVDEHIQMIESAGALAFKVKHSSDLDGLDGLVL
                     PGGESTTMRKIMKRYDLMEPIRAFASEGKAIFGTCAGLVLLSKEIEGGEESLGLIEAT
                     AIRNGFGRQKESFEAELNVEAFGEPAFEAIFIRAPYLIEPSNEVAVLATVENRIVAAK
                     QANILVTAFHPELTNDNRWMNYFLEKMV"
     gene            complement(1560..2447)
                     /gene="pdxS"
                     /locus_tag="IBJ56_001247"
     CDS             complement(1560..2447)
                     /gene="pdxS"
                     /locus_tag="IBJ56_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HAM3417505.1"
                     /translation="MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVM
                     ALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYI
                     DESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVE
                     AVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVAT
                     PADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPM
                     KGIEMSRLNPEDRMQDRSI"
     gene            2571..4016
                     /locus_tag="IBJ56_001248"
     CDS             2571..4016
                     /locus_tag="IBJ56_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HAM3417506.1"
                     /translation="MWKLAGNSNLPIYLQIVDLIETKIINGELLPEEKLPPERQLAEM
                     FGVNRSTVVRALDELTARAVIIRKQGSGTTVNAEKWGLFAGQSTNWRHYLTQGGFTPA
                     VPYIRQAGVMERADSDQVIDAASGELPLEMTPKMETPSLSWQSFIAEEQQEDEAGYKP
                     LRETIQKQMKEAYGLQTRPEQIFITSGAQQALFLITQCLLKPGDAVAIESPSYFYSLS
                     LFQSAGLRIFALPMDEDGVIISELRDLYHKHRVKMVFVNPTFQNPTGLVMSLERRKEL
                     VKICAHLQIPIVEDDPFSELAALDSQVPAPLKQLDTDNVLYIGSLSKIMGSTTRIGWL
                     IGPTAVIERLALARQEMDFGLSIFPQVLANSVLNTPGYKLHLQQLHHVLKQRRGDLIE
                     AFEAILPNDVVFIKPKGGFHLWVKLPVEIRSIRDFDIFLANDLLVMPGFLFGVKEAVI
                     RVTYARLEKTEARRIAEIIKQILIEKKCEEA"
     gene            4197..6203
                     /locus_tag="IBJ56_001249"
     CDS             4197..6203
                     /locus_tag="IBJ56_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3417507.1"
                     /translation="MEQNCKELITYLLLNRQVNLRNVSKNFKVSKEAISAQITQINHL
                     LKSEPILIDHDMIFVTDVCREACYRLLTAEEQQLFSFYEVNIRRKLIMIKLLLHNHYM
                     SLGALADYVYVSKNTMLTDVKSIKESLHEFEIQLDYSRRDGYAVSGSEFLIRNLLAEL
                     IREVVQTPYGKFVLDEKKLITVSEVFLLKKRLEKVESKLQITFTDEQMEELPYILHGI
                     IKRSKVTNKKWTFKIEMYDIKNTREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLVE
                     SALHFSDSEEIAYAVDEFIRLLEMYFATEIMKKNEFKEKVILHVRPAIYRTILGFQIN
                     NPLKKQFIKEYTPTFNIVEKASKPFEKLVGHKWSEEEIVYLSMIVLGWMYQIEETEQP
                     IFRAVVLCKSGTSISKLLLENLKMMFPNIDFQGAYAVRQLSTVARDIDFIFTTVPVQS
                     DATIFVIPSILSKDSRQILREQVDKAIEMDSHKKTKELLAMLKDEIPEENIRLVQAKM
                     ESFFNKKEQPMEKKEPEQMQITEEQVHFLETPLEWEQLVSVAFAPMLERGTVDASYIH
                     TCEEIFYQNYEQMMIGPNIYLPHAKPANGVIEQDIQLMIMKADTKTPENEAVKIMIAL
                     APSEQNKHIPLLLKLNEIFLKPEKLAGILASTNKKKIVEILERG"
     gene            6211..6678
                     /locus_tag="IBJ56_001250"
     CDS             6211..6678
                     /locus_tag="IBJ56_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3417508.1"
                     /translation="MDYHDLFQKELTLINSRYENQAELFEYTSKILEKEQYVEPTFRE
                     AVTSREVVFPTGLEMNGIKIAIPHTDTIYVKRPFVLVNKLSTPIPFIQMGTTDKWIDV
                     EVIFMLGIKNPQDQVPLLSSIMEKFMEADFVEQIKTINDSNTLCDFLKKQFGE"
     gene            6684..6959
                     /locus_tag="IBJ56_001251"
     CDS             6684..6959
                     /locus_tag="IBJ56_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417509.1"
                     /translation="MKKVIVACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLE
                     QHIKTSDVYVAITKANKEFDIPTLNGIAFLTGMGMDEETEKLLNALK"
     gene            6987..8336
                     /locus_tag="IBJ56_001252"
     CDS             6987..8336
                     /locus_tag="IBJ56_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HAM3417510.1"
                     /translation="MESLQSVIQFILNLGAAVFVPALMIIIGLIVRMKVRDAVSAGII
                     LGVAFLGMNIVIGFMIEALTPAAQGLAERTGINLSILDGGWTSMATLAWAWPFAFLMF
                     PLQLGINAIMLVINKTKTLNVDLWNVWGKILTAVLIIGVTQNVYLAFIVAGIQIVTEL
                     ILCDANQRQIQELNGIPGVTVSHGMMIFCIFLMPLDWLLKKIPALRKDMDANALKDKI
                     GIFAENHVMGFIIGGLLGIAAGYDVAKTLMLAMQAAAALTLFPMVAKLFMQALSPLSD
                     GISEFMKRKFKNRELFIGLDWPILAGCSEVWVAIVLMVPVTLIFALILPGNGVLPFAG
                     ILNISLCAPALIVTGGNLIRMIILGTITTPIFLYVSTFFAGTITDLAHSTGAISLKAG
                     QQITWSTLEYPVFRYIFAEASQFTILGFIFVAIWVVLLVFYVKMMKKRTIELEKASS"
     gene            8354..9286
                     /locus_tag="IBJ56_001253"
     CDS             8354..9286
                     /locus_tag="IBJ56_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase family hexose kinase"
                     /protein_id="HAM3417511.1"
                     /translation="MIYTITLNPAIDRLLFIQGELEKRKTNRVKKTEFDCGGKGLHVS
                     GVLSKFGIKNEALGIAGSDNLDKLYAILKEKHINHDFLVEAGTSTRECFVVLSDDTNG
                     STMIPEAGFTVSQTNKDNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKELLRTVKAT
                     GAFLGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDETTNSLEENVRKLAGKIPYLVV
                     SLGAKGSLCAHNGKLYQVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKVATG
                     CSASKVMQQDSSSFDLEAAGKLKNQVSIIQLEER"
     gene            9288..9938
                     /locus_tag="IBJ56_001254"
     CDS             9288..9938
                     /locus_tag="IBJ56_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417512.1"
                     /translation="MLYQKEREDLAKIVKTMFDRFETNAAGGNVSVRMNNEHIIMTPT
                     LMSQAKLCDLSPYEILVVDNNNEVVEGDGRVTREINLHRACYVENPKIGCVLHAHPKE
                     SMLFATLGMELPNLTEATQKIGQIPTLEFAPATSPELAEIVRKHVIELGDKAVPSASL
                     LNKHGIVVLDTSLHKAYDMLERIEYNAYIAEKALVFDALGIKKLAHDRELNYNLEE"
     gene            9942..10139
                     /locus_tag="IBJ56_001255"
     CDS             9942..10139
                     /locus_tag="IBJ56_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417513.1"
                     /translation="MEKFLFNATLFASALLLMVGIFKSSIPITAISLVLAVVSQHFFR
                     KKYPKQTRSYREIVAAKQKKG"
     gene            complement(10183..11706)
                     /locus_tag="IBJ56_001256"
     CDS             complement(10183..11706)
                     /locus_tag="IBJ56_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HAM3417514.1"
                     /translation="MKKLTSVFWGSGCLVLLAVLFGAFLPKQFEAFTTNIQKFLTSNF
                     GWYYLIVVAIIIIFCLFLVLSPIGSIRLGKPGEEPGYSNKSWFAMLFSAGMGIGLVFW
                     GAAEPLSHYAVQAPGGEVGTQAAMKDALRYSFFHWGISAWSIYAIVALALAYFKFRKN
                     APGLISATLYPILGKHAKGPIGQLIDIIAVFATVIGVATTLGLGAQQINGGLTYLFGV
                     PNNFTVQFTIIIIVTILFMLSAMSGLDKGIQLLSNVNIYVAGVLLVLTLILGPTLFIM
                     NNFTNSFGDYLQNIIQMSFQTAPDAPDARKWIDSWTIFYWAWWLSWSPFVGIFIARIS
                     RGRTIRQFLLGVIVLPALVSVFWFAVFGGSAIFVEQHGNSGLSSLATEQVLFGVFNEF
                     PAGMVLSIVAMILIAVFFITSADSATFVLGMQTTGGSLNPPNSVKVTWGLLQAGIASV
                     LLYAGGLTALQNASIIAAFPFSIVIILMIVSLFVSLTREQEKLGLYVRPKKSQRSQL"
     gene            complement(11874..13244)
                     /gene="argH"
                     /locus_tag="IBJ56_001257"
     CDS             complement(11874..13244)
                     /gene="argH"
                     /locus_tag="IBJ56_001257"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HAM3417515.1"
                     /translation="MEKLWGGRFQGKSEAWIDDFGASISFDQKMAKEDLAGSLAHVAM
                     LSKCGIIPASEAAEITAGLKILQEKLALGELEFSTVNEDIHLNIEKLLHEEIGPVAGK
                     LHTARSRNDQVATDMHLYLKQAVAEIIQSLKHLRVVLVQKAEANVETIMPGYTHLQHA
                     QPISFAHHLLAYFGMFTRDLERLEESVKRIDISPLGSAALAGTTFPIDRAYSAELLGF
                     SAIYENSLDGVSDRDFIIEFLSNSSILMMHLSRFCEELILWTSHEFQFVELTDAFSTG
                     SSIMPQKKNPDMAELIRGKTGRVYGNLFGMLTVLKGLPLAYNKDLQEDKEGMFDTLET
                     VQTSLDIFAGMIETMKINTEIMEESTQKDFSNATELADYLAKKGVPFREAHEIVGKLV
                     LECTQNGIYLQDVALSHYQEINPLIDDDIYVVLSSKTAVQKRNSYGGTGFDQIKVALE
                     NAKKTL"
     gene            complement(13248..14462)
                     /locus_tag="IBJ56_001258"
     CDS             complement(13248..14462)
                     /locus_tag="IBJ56_001258"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HAM3417516.1"
                     /translation="MAKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLD
                     FIKEKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLV
                     EVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVRDWKWSREEEINYAKE
                     HNIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTVSLEDAPDTPDIVE
                     ITFDAGIPISLNGENMSLANLILTLNEIAGKHGVGRIDHIENRLVGIKSREVYECPAA
                     VTLITAHKELEDLTFVREVAHFKPIIEQKISETIYNGLWFSPLTEALVAFLKSTQKFV
                     NGTIRVKLFKGHAIVEGRKSPNSLYDENLATYTSSDTFDQDAAVGFIKLWGLPTKVSA
                     EVNSKVTITTEV"
BASE COUNT         4627 a         2811 c         2886 g         4152 t
ORIGIN      
        1 aaggacaagt tactgggaaa aacgtgcgca tcgtactacc tgaaggaaca gatgaacgta
       61 ttgttggagc agctgcacgt ctgcaaaaag aaaatatcgt aaaaccaatt ttgcttggta
      121 acaaagctga aattgaagca aaagcaaaag aaattggcgt ttctgttgaa ggaatcgcta
      181 ttcacgaacc tgcgaccgat ccactttttg atgaattagt ggctgcattt gtagaacgtc
      241 gtaaagggaa agcaacagaa gaagctgcac gtaaaatgct cgttgatcca aactattttg
      301 gaacaatgct tgtatacact ggaaaagcag aaggtcttgt aagtggcgcg gctcactcta
      361 ctggtgacac tgttcgccca gcactacaaa ttattaaaac aaaaccaggc gtaagtaaag
      421 ttgccggcgc aatgattatg gttcgcggtg aagaacgcta tttattcagt gatgtagcta
      481 tcaatattgc accagttgca gcagatttag cagaaaatgc gattgtaagt gcggaaacag
      541 cagaaatctt cggcattgat ccacgtgttg caatgctaag tttctctaca aaaggttctg
      601 caaaatccga tgaaacggaa aaagtcgtag aagcaactgc tcttgcaaaa gaaaaagcac
      661 ctgaattaac gcttgatggt gaattccaat ttgacgcggc atttgttcca acggttgctg
      721 agaaaaaagc gccaggatcc gttattaaag gggacgcaaa tgtatttatc ttcccaagcc
      781 tagaagcagg aaacattggt tacaaaattg cgcaacgttt aggtaacttt gaagcagttg
      841 gcccaatttt acaaggctta aatgcaccag ttaatgattt atctcgtggt tgtaatacag
      901 atgacgttta taacttaacg ttaattacag cagcgcaagc agtgaataaa taatatgcaa
      961 aagcagtaga ctaaattgtc tactgctttt tttataccat tttttcgagg aagtaattca
     1021 tccagcgatt gtcgttagta agttcaggat ggaatgcggt aactaaaata ttagcttgtt
     1081 tagctgctac gattcgattt tcaactgttg ctaacacagc tacctcatta ctcggttcaa
     1141 ttaagtatgg tgcgcggata aatatagctt caaacgcagg ttcaccaaat gcttcgacgt
     1201 ttaattcggc ttcaaaactc tctttctgcc taccaaaacc attacggatc gcggtagctt
     1261 caatcaatcc taggctctct tcgccacctt caatttcttt tgacaaaagg acaagcccag
     1321 cacaagttcc aaaaatagct ttcccttcac ttgcaaatgc gcggataggt tccattaaat
     1381 cataacgctt cataatcttg cgcatcgttg tactttcacc accaggtaaa acaagcccgt
     1441 caagtccatc taaatcactt gaatgcttta ctttaaaagc aagagcaccg gctgattcaa
     1501 tcatttggat atgttcatca actgcacctt gaattgcaag gactccaatt tttttcatat
     1561 taaatgctcc gatcttgcat tctgtcttct gggttaaggc gagacatttc gattcctttc
     1621 atcggggaac ctagctcttt ggaaagtttt ccgattagct catagtcagt atagtaagtg
     1681 gtagcttgga caatcgcact ggcaaatttg gcagggttat ctgatttgaa aataccagaa
     1741 ccaacgaaaa cgccgtctgc tccaagttcc atcattaatg cggcatctgc gggagtcgca
     1801 acaccaccag cagcaaaatt aacgaccgga agtttgccaa gtgttttaat ttctttgatt
     1861 aattcatatg gagcaccgaa gtttttagcg gcaaccatta actcatcatc cgtcattccc
     1921 gcaatttggc ggatttgacc gtttacttgg cgcatgtggc ggacagcttc aacgatattg
     1981 cctgttccgg gttctccttt tgtacgaagc atggcagccc cttcaccaat acggcggagt
     2041 gcttcaccaa tatcacgaca accacacacg aatgggacag tgaaatctga ttttaataaa
     2101 tggaattcat catcggctgg tgttaatact tcactttcgt cgatataatc aacacccatt
     2161 gcttcaagga cgcgagcttc tgtaatatga ccaatacgtg ctttcgccat tacggggata
     2221 gaaacagcgt tcattacttc ttcgacaata cgaggatcgg ccatacgagc gacaccacca
     2281 gctgcacgaa tatcggaagg aacccgttca agcgccataa cggcaacagc gccagcttct
     2341 tctgcgattt ttgcttgttc agcattaact acgtccataa tgacgccacc tttttgcatt
     2401 tgcgccatac cacgttttac acgatctgta ccaacttttt tctccatact aataacctcc
     2461 atcaaagtta attgaaaata cctgattatt atgataagct aaaagccatt tcgtaaaaac
     2521 agccaattgg atgttgtttt ctccatccaa ttataaaaga ggtgtagtag atgtggaaac
     2581 ttgctggaaa ttctaattta ccaatttatt tacaaattgt agatttaata gaaacaaaaa
     2641 ttatcaacgg agaacttttg ccagaagaga agttgcctcc ggaaagacag ttggcggaaa
     2701 tgtttggggt gaatcgttcg acggttgtgc gggcgctcga tgaacttaca gcacgtgcgg
     2761 ttatcattcg caaacaaggt agtggaacga cagtcaatgc ggaaaaatgg gggctttttg
     2821 cagggcagtc aaccaattgg cgccattatt taacgcaagg gggctttaca ccagcagtcc
     2881 cttatattcg gcaagcggga gtaatggaac gagctgattc ggatcaagtg attgatgcag
     2941 cgagcgggga attgccactt gaaatgacgc caaaaatgga aacaccgagt ctttcatggc
     3001 agtcttttat tgcagaagaa caacaggagg atgaagcggg atacaaacca ctgcgtgaaa
     3061 cgattcaaaa acagatgaag gaagcttatg gcttacaaac acgacccgaa caaattttca
     3121 ttacatcggg tgcacaacaa gcgctctttt taattacgca atgtttatta aaaccgggtg
     3181 atgctgtggc aattgagtca ccttcctact tttattcgct atcgttgttt cagtcagccg
     3241 gtttgcggat ttttgcacta ccaatggacg aggatggtgt cattatttct gaattacgcg
     3301 atttatacca taaacaccgt gtgaaaatgg tttttgttaa tccaaccttt caaaatccaa
     3361 ctggacttgt aatgagtttg gaacggcgca aagaactcgt gaaaatttgc gctcatttgc
     3421 aaataccgat agttgaagat gatccatttt cagaactagc cgcactagac agccaagttc
     3481 cggcaccact gaaacaactg gacacagata atgtgttata cattggctcg ctctcaaaaa
     3541 ttatgggatc cactacacga attggttggc ttattggtcc gacagcagta attgaacggc
     3601 tcgcgctcgc caggcaagag atggattttg gtttaagtat ttttccacaa gtactggcaa
     3661 atagtgtttt gaatacgccc ggttacaagt tgcatttaca gcaattgcac cacgtattaa
     3721 aacagcgccg aggtgattta atcgaagctt tcgaagccat tttaccgaat gatgtagtat
     3781 ttattaagcc aaaaggtggt tttcatttat gggtgaaatt accagtcgaa attcgctcga
     3841 ttcgtgattt tgatatattt ttagcgaatg atttacttgt tatgccagga tttttatttg
     3901 gggtaaaaga agcggttatc cgtgtaactt atgcgcggct tgagaagacg gaagcgagac
     3961 gtatagctga aataataaag caaatattaa tagaaaaaaa gtgcgaggaa gcttgattta
     4021 aagctatctt gcactttttt catattcccc aaaaaatcct tctaatctat aatagaaagt
     4081 aacccgcgat tttaactcat cacaataaat ctttctgcca aaagcgaagt tgtgatgaat
     4141 caccattttt atgtaagggt tatcatttac tattaatata agggagggga aagtagatgg
     4201 aacagaattg taaggaatta attacttatc tgctcttgaa tcggcaagtg aatcttagaa
     4261 atgtttccaa gaattttaaa gtatccaaag aagcaattag cgcacagatt acacaaataa
     4321 accatctact aaagtcagaa ccaattttga ttgatcatga tatgattttt gttacagatg
     4381 tatgtaggga agcttgttac cggcttttaa ctgcggaaga gcaacagctg ttttcgtttt
     4441 atgaggtaaa tattcgtcgc aaacttatca tgattaaatt actacttcat aatcattata
     4501 tgtcactcgg agcgcttgcg gactacgttt atgtaagtaa aaacaccatg cttacagatg
     4561 ttaaaagtat caaagagagt ctgcatgagt ttgaaattca gcttgattat tcgaggagag
     4621 atggctacgc tgtttctggt tcagaatttc tgattcgtaa tttactagca gaacttattc
     4681 gcgaagtcgt tcagacccca tacgggaaat ttgtccttga tgaaaagaag ctgattactg
     4741 tgagcgaagt gtttttacta aaaaaacggc tcgaaaaggt tgaaagtaag cttcaaatta
     4801 cctttacaga tgagcagatg gaagaattgc cctatattct ccacggcatc atcaaaagat
     4861 ccaaagtaac aaacaagaaa tggacattta aaattgaaat gtatgacatc aaaaataccc
     4921 gtgagttccc gataatgaaa gaaatgtttt gggggtatga ttttttaagt gaaaacgatt
     4981 tactttactt atcgttacaa gtcctcgctt cgaacttagt cgagtcggcg cttcatttct
     5041 cagacagtga agaaatcgcc tacgcagtcg acgagttcat tcgtttacta gaaatgtatt
     5101 ttgcgacgga aatcatgaag aaaaatgaat ttaaagaaaa agtgatttta catgttaggc
     5161 cagcaattta ccgaacaatt ttaggatttc aaatcaataa tccacttaaa aagcagttta
     5221 ttaaagagta caccccgaca tttaacattg tagaaaaagc ctccaaacct tttgaaaaat
     5281 tggttggtca caagtggtca gaagaggaga ttgtgtatct ttctatgata gttcttgggt
     5341 ggatgtatca aattgaagaa acagaacagc cgattttccg cgcagttgtc ctttgtaaaa
     5401 gtggtacatc catctctaaa ctactgttag aaaacttgaa aatgatgttt ccgaatattg
     5461 attttcaagg agcttatgcg gtgcggcaat taagtacggt ggcacgcgat attgatttta
     5521 tttttacgac tgtgcccgtt caaagcgatg ccaccatttt tgtaatcccg tccattttaa
     5581 gtaaagacag ccgccaaatc cttagggaac aagtggataa agcaatcgaa atggacagtc
     5641 ataaaaaaac caaagaactg cttgctatgc taaaagatga aattcccgaa gaaaatattc
     5701 gattagtgca agccaaaatg gaatcctttt tcaacaaaaa agagcaacct atggagaaga
     5761 aagaaccaga acaaatgcaa attacggaag agcaggttca cttcttagaa acgccacttg
     5821 agtgggagca actagtttcg gtggcatttg caccaatgtt agaacgaggc acggtggatg
     5881 ctagttacat tcatacttgt gaagaaatat tctatcaaaa ttatgagcag atgatgattg
     5941 ggccgaatat ttatttacca catgccaaac ccgcaaacgg ggtaattgag caagatattc
     6001 agttgatgat aatgaaagcg gacacaaaaa cccctgaaaa tgaagcagtc aaaatcatga
     6061 ttgccttagc accatctgaa caaaacaaac atataccatt attactaaaa ttgaacgaaa
     6121 ttttcttgaa gcctgagaaa ttagcgggaa ttctcgcttc tactaacaaa aagaaaatcg
     6181 ttgaaatcct tgaaaggggg tgagcgtcgc gtggattacc atgatttgtt tcaaaaagag
     6241 ttaaccctga taaattcaag atacgagaat caggcagaac tttttgaata cacgagcaag
     6301 atattagaga aagagcagta tgtagagccg acttttagag aagcggtaac aagccgagaa
     6361 gttgtttttc ctactggtct cgagatgaat ggcatcaaaa ttgcaattcc tcatacagac
     6421 acgatttatg taaaacgtcc ttttgtactc gtaaataaac tttctacgcc gattcctttt
     6481 attcaaatgg gaacgacaga taagtggatt gatgtcgaag taattttcat gttaggaatc
     6541 aaaaatcccc aagatcaagt tccactgctt tcaagtatca tggagaaatt tatggaagca
     6601 gactttgtgg aacaaataaa aacaataaat gatagcaata ctttatgtga tttcctaaaa
     6661 aaacaatttg gagagtgatt acaatgaaaa aagttatcgt agcatgtgga tcaggtgtag
     6721 caacaagcca aacagtagca tcaaaagtag aacgaatttt aaaagaaaaa ggggttcgtg
     6781 caactgtaga agcagtagat attaagtctt tagagcaaca tattaaaaca agtgatgtat
     6841 atgtagctat tacaaaagcg aacaaagaat tcgatattcc aacattgaat ggtattgcct
     6901 tcttaacagg catgggcatg gacgaagaaa cagaaaaatt acttaacgcc ttaaaataaa
     6961 ccagataaaa cagggagcgt gaaaaaatgg agtcattaca atcagttata cagtttattt
     7021 tgaaccttgg agctgccgtt tttgttccag cactaatgat tattattggg ctaattgtac
     7081 gaatgaaagt aagagatgca gtcagtgcgg ggattattct aggggttgct ttccttggaa
     7141 tgaacatcgt tatcggcttt atgattgaag ctttaacacc agctgcacaa ggactagctg
     7201 agagaacagg gattaattta agcatcttag atggaggctg gacatcgatg gcaacacttg
     7261 cttgggcatg gccatttgcc ttcttgatgt tcccgctaca actaggtatt aacgcaatta
     7321 tgctcgttat caataaaacc aaaaccttaa acgtcgattt atggaatgtt tgggggaaaa
     7381 ttttaacagc cgtacttatt atcggtgtaa cacaaaatgt ttacttagca tttattgttg
     7441 ccggaattca aattgttaca gaactaattc tatgtgatgc caaccaacgt caaattcaag
     7501 agttaaatgg aattccaggt gtaaccgttt ctcacggtat gatgattttc tgtattttct
     7561 taatgccgct tgactggtta ctgaaaaaaa ttccagcact tcgtaaagac atggatgcca
     7621 atgcgttaaa agataaaatt ggtatttttg cagaaaacca tgttatgggc tttattatcg
     7681 gtggacttct ggggattgca gctggttatg atgttgcgaa aaccttgatg ttagccatgc
     7741 aagctgcagc agcattaact cttttcccga tggttgcaaa actatttatg caagctcttt
     7801 cgccactatc tgatggtatt tctgagttca tgaaacgtaa atttaaaaac cgtgaattgt
     7861 ttattgggct agattggccg attttagcag gatgtagtga agtttgggta gcaatcgttc
     7921 tgatggttcc agttacactt atctttgcgc ttattttacc aggaaatggc gtattaccgt
     7981 tcgctgggat tttaaatatt tctttatgcg caccagcact tatcgtaaca ggtggaaact
     8041 taattcgtat gattatcctt ggaacaatta ccacaccgat tttcttatat gtatctactt
     8101 tcttcgctgg aacaattacg gatttagcgc attcaacagg cgcaatttcg ctaaaagctg
     8161 gacaacaaat tacatggagt acacttgaat atccagtgtt ccgttatatc tttgcagaag
     8221 caagtcagtt tactatttta ggctttattt ttgtcgcaat ttgggtagta ttactagtat
     8281 tctatgtgaa aatgatgaaa aaacgaacaa ttgaactaga aaaagctagc tcttaagaaa
     8341 taggagtgat gagatgattt acacgataac attaaatcca gccattgacc ggttgctttt
     8401 cattcaagga gagttagaaa aaaggaagac taatcgagtc aaaaaaacgg aatttgattg
     8461 cgggggaaag gggcttcatg tttcgggagt gttatccaaa ttcggtatta aaaatgaagc
     8521 acttggaatt gcgggatcag acaatctcga caaactatat gccattctaa aagaaaaaca
     8581 tatcaaccat gatttccttg tagaagctgg aacttcgaca agagaatgct tcgtcgtctt
     8641 aagtgatgac acgaatggca gcacgatgat acctgaagct ggttttaccg taagtcagac
     8701 caacaaagac aatcttttaa aacaaatcgc taaaaaagtt aaaaaagagg atatggtggt
     8761 gattgctgga tctccgcctc ctcattatac attatctgat tttaaagaac tactaagaac
     8821 tgtcaaagca acaggagcgt ttctcggatg tgataattct ggtgaatatt taaacttagc
     8881 ggtcgaaatg ggcgttgatt tcattaaacc aaatgaagat gaagtcattg ccattttgga
     8941 tgaaacgacc aattcactag aagaaaatgt ccgcaaatta gccggaaaaa ttccctatct
     9001 agtcgtttcg cttggagcaa aaggatcact ttgcgcgcat aatggcaagt tgtatcaagt
     9061 tattccacca aaagtgcagg aacgcaatga tactggggct ggcgatgtgt ttgttggggc
     9121 atttattgca ggacttgcga tgaacatgcc aattactgaa acattaaaag tcgcgacagg
     9181 ttgttccgct agtaaagtca tgcaacaaga cagttcgagc tttgatttag aagctgctgg
     9241 aaaactcaag aatcaagtaa gcattataca attggaggag agataatatg ttataccaaa
     9301 aagaacgtga agatttagca aaaatagtga agacgatgtt tgaccgcttt gaaacgaatg
     9361 cagctggagg aaatgtaagt gtgcgcatga ataatgagca cattattatg acacctacac
     9421 tcatgagtca agcaaaactt tgcgatcttt ccccatatga aatccttgta gtggataata
     9481 acaatgaagt cgtagaaggc gatgggagag ttactagaga aattaactta caccgcgctt
     9541 gttacgtaga aaatccaaaa attggctgtg tactccatgc tcatccaaaa gaatcgatgc
     9601 tatttgccac acttggaatg gaattaccga atttaacaga agcaacgcaa aaaattggcc
     9661 aaattccaac acttgaattt gcgccagcga ctagtccaga acttgcggaa atcgttcgta
     9721 aacacgttat cgaactagga gataaagctg ttcctagtgc aagtttatta aataaacacg
     9781 gtattgtcgt attagataca tcacttcata aagcatacga catgctagag cgtattgaat
     9841 acaatgccta tattgcagaa aaagcgttag tatttgatgc gttaggtata aaaaaattag
     9901 ctcatgaccg cgaattaaat tataatttgg aggagtaact aatggaaaaa ttccttttta
     9961 atgcaacgtt atttgccagt gctttattac tgatggtcgg gatatttaaa agctctattc
    10021 caattaccgc catttctctc gtgttagcag ttgtttcgca acatttcttt cgaaaaaaat
    10081 atcctaaaca aactcgtagc tatcgcgaaa tagtcgcggc aaagcagaaa aaaggatgaa
    10141 aaaagggatg aaaatctagt tgtagatttt catccctttt tattatagtt gggaacgttg
    10201 tgattttttc ggtcggacgt acaatccgag tttttcttgt tccctcgtta acgaaacgaa
    10261 taacgaaaca atcattaaga taatgacgat agaaaacgga aaggctgcta taattgatgc
    10321 gttttgaaga gctgtgagtc cccccgcata tagtagcaca cttgctatcc ctgcttggag
    10381 tagtccccat gttactttga cggagttcgg tggatttaaa gatccgcctg tcgtttgcat
    10441 accgagaaca aatgtggctg agtctgctga agtaataaag aagactgcaa ttaaaatcat
    10501 cgcaacaatc gataaaacca taccagctgg gaattcatta aataccccaa agagtacttg
    10561 ttcagttgct aaacttgaaa gcccagaatt tccatgttgt tcgacaaaaa tcgccgagcc
    10621 gccaaatacg gcaaaccaaa atacactgac taaagcgggc aacacgatga caccgagcaa
    10681 gaattggcga atcgttctac cgcgcgaaat tctggcaata aaaatcccaa cgaacggaga
    10741 ccaagaaagc caccaagccc aataaaaaat agtccatgag tcaatccatt ttcgagcatc
    10801 aggcgcatca ggtgctgtct gaaaactcat ttggatgata ttttgtaagt agtcaccaaa
    10861 tgaattggtg aagttattca taatgaatag ggtaggtcca agaataaggg ttaaaactaa
    10921 taaaactcca gcaacataaa tatttacatt acttaaaagc tgaatccctt tatcaagtcc
    10981 agacatggct gataacataa ataaaatggt gacaatgata ataatggtaa attggacagt
    11041 aaaattgttt ggaacgccaa acaagtatgt aagaccacca ttaatttgtt gagcgccaag
    11101 gccgagtgtc gttgcaacac cgatgactgt cgcaaaaaca gcgatgatat caatcaattg
    11161 tccaattgga cctttggcat gtttccctaa aataggataa agagtggcac ttattaaacc
    11221 cggcgcattt ttccggaatt tgaagtaagc cagtgctaaa gcgacaatcg cataaatcga
    11281 ccaagcagaa attccccagt ggaagaatga atagcgaagc gcatctttca tcgctgcttg
    11341 cgtgccgact tcaccgccag gagcttggac cgcataatga gataacggct cagctgcacc
    11401 ccagaaaacg aggccaattc ccattccagc actaaacaac atcgcaaacc aagacttatt
    11461 actatacccc ggttcctcac ccggttttcc gaggcgaatc gagccaatcg gacttaaaac
    11521 taaaaacaag cagaagataa taataatcgc tacaacaatt aaatagtacc aaccaaaatt
    11581 acttgttaga aatttttgga tattggttgt aaaagcttca aattgttttg gcaaaaaggc
    11641 tccaaataaa acggctaata aaacaagaca acccgatccc caaaaaacac ttgttaattt
    11701 tttcaataca tcacttccct ttatattctc tgtatctatt tccccatgtt agcaaaaagg
    11761 taacattctt tttaatagta acaaaaaaag tagtgctctg acaaatcatg taagaggaaa
    11821 aagggggaga agtcagcaaa aaactggaac gccattcagc atcccagtta gttttacaat
    11881 gtttttttcg cgttttcgag agcaacttta atttgatcaa atccagtccc gccgtaagaa
    11941 tttctttttt gcacggcagt tttagaggaa agcaccacgt aaatatcatc atcaataagt
    12001 ggatttattt cctgatagtg gctaagcgct acatcttgca aataaatccc attttgcgta
    12061 cattcaagca ccaatttccc aacaatctca tgcgcttctc taaatggaac gccttttttc
    12121 gctaaataat ctgctagttc cgtcgcattg gaaaaatctt tttgcgtcga ttcttccatt
    12181 atttctgtgt tgatcttcat cgtttcaatc attcctgcga aaatatctaa gcttgtttga
    12241 accgtctcaa gcgtatcaaa catgccttcc ttatcttctt gcaagtcttt attgtaagcg
    12301 agtgggagac cttttaaaac cgttagcatg ccgaacaggt ttccgtaaac ccggccagtt
    12361 ttaccgcgaa ttaactcagc catatctgga tttttctttt gcggcataat agaacttccc
    12421 gttgaaaaag cgtccgttaa ctcgacaaat tgaaactcat gactcgtcca aagtatcagt
    12481 tcctcacaaa aacgcgataa atgcatcatt aagatagaac tgttactaag aaactcaata
    12541 ataaaatcac gatcactcac gccgtctaaa ctattttcat agatagcgga aaaaccaagt
    12601 aattcagcgc tgtaggctcg gtcaatcgga aaagtcgtcc cagccagcgc agcagaaccg
    12661 agcggtgaaa tatcaatccg tttgacactt tcttctaaac gctccaaatc ccgtgtaaac
    12721 attccaaagt aagctaataa atgatgtgca aaagagatgg gttgggcgtg ttgcaagtgt
    12781 gtatagccag gcataatcgt ttcgacgttc gcctccgctt tttggactag caccacgcgt
    12841 aaatgtttta atgactgaat aatttctgct acggcttgtt ttaaatacaa atgcatgtct
    12901 gttgcaactt gatcattccg actgcgcgcc gtatgaagtt ttccagcgac tgggccgatt
    12961 tcctcgtgca atagtttttc gatatttaaa tgaatatctt cgttaactgt gctgaattcg
    13021 agctcaccaa gcgctaattt ttcttggagg atttttaatc cggccgtaat ttcagctgct
    13081 tctgaagcag gaataattcc gcatttgctg agcatagcga catgcgctaa acttcccgcc
    13141 aagtcttctt ttgccatttt ttgatcaaaa gaaatcgaag caccaaaatc gtcaatccat
    13201 gcttcacttt tcccttgaaa acgtccgccc catagttttt ccatttttta cacctcagtt
    13261 gttattgtca cttttgaatt aacttctgcg cttactttcg ttggtaatcc ccaaagcttg
    13321 atgaaaccaa ctgctgcatc ttggtcgaat gtatcggaag acgtgtaagt cgctaggttt
    13381 tcatcataaa gcgaatttgg tgattttctt ccttccacaa tggcatggcc tttaaacagt
    13441 tttacacgaa tcgttccgtt cacgaatttt tgcgtggatt ttaagaaagc aactaatgct
    13501 tctgtcaaag gtgagaacca taggccattg taaattgttt cgctgatttt ttgttcgata
    13561 ataggtttga aatgtgccac ttcacgaaca aaagttaaat cttctaattc tttatgtgca
    13621 gtaatcaaag tgactgcggc cggacattca tatacttcac gtgatttaat accaactaaa
    13681 cgattttcga tatgatcgat tctaccgaca ccatgttttc cagcaatttc atttaaagta
    13741 aggatcaaat ttgctaggct catattttct ccatttagag aaattggaat accagcatca
    13801 aacgtaattt caacaatatc tggtgtatct ggtgcgtctt ctaaactcac tgttaagtcg
    13861 taagctgctt ctggtggtgt tgtccatggg ttttcaagca ccccacattc gttacttcta
    13921 ccccaaaggt tttggtcaat cgagaaagga ttatctaaat caattggaac agggatgtta
    13981 tgttctttgg cgtaattgat ttcttcttct ctagaccatt tccaatcacg gacaggggaa
    14041 acaactttta aatcaggagc aagtgcatga atcgctactt caaaccgaac ttggtcattt
    14101 cctttaccag tacaaccatg agcgatagca gaggcacctt cttgacgagc tacttctact
    14161 aattttttcg caattaacgg acgacttaaa gcggaaataa gcggatattt tccttcataa
    14221 tatgcgtggg cttgaagggc aattaacgca aaatcctccg cgaattcttc ttttgcatca
    14281 atcgtgtagg attcacttgc tccaacagta atggcttttt ctttaataaa atccaaattt
    14341 ttgccttcac caacatctaa gcaacatgca ataacttcat aacctgattc tactaaccac
    14401 tgaattgcca cagaagtatc taacccacct gagtaagcta atacgatttt ttctttcgcc
    14461 attgtaaaca tcccct
//
LOCUS       DABQVC010000059        14056 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.059,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000059 DABQVC010000000
VERSION     DABQVC010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14056
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.059"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            5..1840
                     /locus_tag="IBJ56_001259"
     CDS             5..1840
                     /locus_tag="IBJ56_001259"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721414.1"
                     /note="catalyzes the hydrolysis of a monocarboxylic acid
                     amid to form a monocarboxylate and ammonia; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HAM3417517.1"
                     /translation="MLLTITAVCTVFSIVGGYVFFTSQQTTTSENKSAVSKKKPPTTK
                     NEKPKQPPNKLTLGKNKENSHLEKNFGGKQLQVEGIDDRAFQSSLKKRTEIKMKPEKA
                     PPKKQDIKPVKPIPSKPEKEEDSSSPIYEKARIMTPINNQLDKLDLAVLEAKEPLIIG
                     ADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLTLNAITEINPTIIAEAEQLDKD
                     NSANKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGEDATIVENLKANGALILGK
                     TNMSEWAAGMDEELPNGYSGKKGQSKNPYSSDLDPSGSSSGSATGATSDFAAIAIGTE
                     TNGSIIIPASAQSAVGYKPSQGLINNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALIN
                     TTSNPPLSTDSLQGKRIGLLADGESNEETAVIKKIKYDLKKAGAIIIEGVAVGEFEQL
                     DTDYALLLNADFKHDLNQFLNVNNAPMTTLESIIQFNQTNPARNMKYGQSELVKSQQS
                     TTTKLQADSLASNLIQEAQNELDSMLQKDKLDAVVTIGMGGSVTFLAPIAGNPELTIP
                     AGYDEETNQPISLTFITARNSDTTLLNMGYSYEQQSKNRKSPNLK"
     gene            complement(1889..2617)
                     /locus_tag="IBJ56_001260"
     CDS             complement(1889..2617)
                     /locus_tag="IBJ56_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HAM3417518.1"
                     /translation="MTKLKVTGLKKSFGANEVLKGIDIEVKEGEVVCVIGPSGSGKST
                     FLRCMNNLEEITAGEVVVDDFNITDKKVDINKVRENIGMVFQHFNLFPHLSVLENITL
                     APVELKKMDKEAAKSNALRLLEQVGLREKAEEFPNQLSGGQKQRVAIARALAMDPDIM
                     LFDEPTSALDPEMVGEVLGVMKELAKGGMTMMIVTHEMGFAREVGDRVIFMDGGYIVE
                     EGKPADIFDNPTNERTISFLDKVL"
     gene            complement(2610..4052)
                     /locus_tag="IBJ56_001261"
     CDS             complement(2610..4052)
                     /locus_tag="IBJ56_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464373.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAM3417519.1"
                     /translation="MKKFSRFILMMAIACVAAFIFTGNGLNAKAAEETYLIGTDTTFA
                     PFEFEKDGEHVGIDMDILKAIAKDQNFKYEIKAMGFNAAVQALEANQVDGVIAGMSIT
                     DERKQKFDFSDPYFDSGVVMGILKDNDEIKTYDDLKGKKVAVKTGTEGYAFAEKIKDK
                     YDFDIVVFDDSAQMYDDVKTRNSVACFDDYPVLAYGVQTGNGLKIVTEKEKGNSYGFA
                     VNKGKNQELLEKFNAGLVNIKASGEYDKILENYLGKNAIKENTTEKGFMGIIKSSWPA
                     LLSGLWLTIRLAVVSLIIAFIIGITFGFMKVSNSKILRGIATVYVDIFRGTPLIVQAF
                     FFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGLPH
                     KKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTW
                     TWLIIGIMYLIVITILTKISDRLERRLRND"
     gene            complement(4222..5322)
                     /gene="uvrC"
                     /locus_tag="IBJ56_001262"
     CDS             complement(4222..5322)
                     /gene="uvrC"
                     /locus_tag="IBJ56_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit C"
                     /protein_id="HAM3417520.1"
                     /translation="MDDKLQKKLTLLPESPGCYIYRDENNEILYIGKSKCLKNRVKSY
                     FHSKQIGKTARLVRQIRDLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYI
                     KITNEKNPHIEVVFEVKRDGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDGKPGRPCL
                     YYHLGLCLGPCQAEIDPAVYKKQIHKISRFLEGDVKNVKDKLLGDMLTATENLEFERA
                     AELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNHLSVFVFFVRNGAINGSKWHV
                     FQIEKSLQEDLAKFLNQFYKDPNNIRPKELLIAEKIDKSLLNEQLRKACLFPQKGGKK
                     KQVDLAIENAKSAYIAYAKMKEYDFEIQLNNH"
     gene            complement(5427..6530)
                     /locus_tag="IBJ56_001263"
     CDS             complement(5427..6530)
                     /locus_tag="IBJ56_001263"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HAM3417521.1"
                     /translation="MNQLAPFYADHVGSILRTKGIKDAREKFQSGEITVSELRKIENT
                     EIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGVEGYDAAGGIQFSKVQTKSHS
                     VKITGPIDFTTHPFIEDFIFLKEAVGDKHVAKQTIPSPAMLHYRGDIEYQPYLDDAEK
                     FAKDLAVAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPDTLQETYK
                     NLINDAIKYKPADMVITMHICRGNFRSTWIAEGGYGPVAETLFGKLNIDGFFLEYDNE
                     RSGDFAPLKNVTRPDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQC
                     GFASTEEGNILTEEEQWDKLRYVVRLAKDIWGE"
     regulatory      complement(6625..6722)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            complement(6787..7164)
                     /locus_tag="IBJ56_001264"
     CDS             complement(6787..7164)
                     /locus_tag="IBJ56_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HAM3417522.1"
                     /translation="MAKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPETGELA
                     DGTTKQAEQAFKNIAAVLAEAGSGLDKIIKATVFFKDLNEFKAVNEVYATFFSSDFPA
                     RSAFQVAKLPLDAAIEIEVIAEA"
     gene            7243..7500
                     /locus_tag="IBJ56_001265"
     CDS             7243..7500
                     /locus_tag="IBJ56_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HAM3417523.1"
                     /translation="MILTIYLIAITLVSFLLFAVDKRKAIKHAYRIPESVLLFTAFLG
                     GAFGSWMSMQLFHHKTQKPKFRILVPLAMVWTVGMVIWWLY"
     gene            complement(7638..13721)
                     /locus_tag="IBJ56_001266"
     CDS             complement(7638..13721)
                     /locus_tag="IBJ56_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3417524.1"
                     /translation="MIKATRARHYLVLLMAFFLVLGQLNLTALKVFAKENGNDELTYE
                     VQSKLAEDKKSADLTIKVTPKNDQVKILTIETPDGEKKEGQEVSYKAEKNGTTNFLIN
                     YQDASEEKAETKKYTASYEVNDIVSDDEANKDNTTEKVTEKEADNIQPPSTKDSNKNL
                     KSLKAGQTTVDLKIPDYDQTAWANGDIKEVTATVNFGDNTSTGKKVNFTLPDGMRFVS
                     LPVPSNYQAGSNVDKGVLSHLGASDPLGIAITSVKVPDKEKAYNQATFGTVSYELSPG
                     TEKASFTFSVRVDAAKYYGAVDLATPIKTEIFMGETTSPVASAEQAIHAEGNKVVGYT
                     NQDHVKTMFRTWYSNQRLTEVLASTDTTDSYNYTKSYSVVNGLNNLDNRGSAYYLAKN
                     IEMTLYYPEGMEFVNVVNHGGTPLTDNSNLTITNYPSENKVVVDCKQLNFNSANNSIY
                     GVKYKVPKGTPVGTYSTAKAPHAVITTYDGEVFETDALTNNTNDLTTLAPLDTCKVVD
                     TSNNKMNLFSANGTINPDNETWAGSIQIDNKRTSGVKKNQMYHIEFDPNWEAYMVNIP
                     FDSTISENKITDVQYKTNLNDTFRTYEGALTKNNNQMYRLDANAVELQEGEYFTEVKA
                     NVGDFSPGYQNTEASATYRWNSTVSYGKVKPGITSVQYKGSIWDADDEAETKSSATST
                     YSVLNTESTAANGTAAFYDKAGNVVKTASPGETIKTKATLLLSDYPYGTRTVLNNPEV
                     YLRALEGTKVLPSSIKLTDQDGKDVNFSIQQETANNGDKVYVLKTTDVSVGAFTGYPA
                     KSKFLNISYDTTFDVTLAKSINMDAQEVLAWGGPNVASAIANNNFSDVGLDVNKNGKD
                     NEKLLSVNSSTLSVPKQDTVAVETFLSIAGEGEKAAYTEGDDSTVSYFTPGTDAEYTV
                     QITNASNGEATTFELYIPIPKTGQNFGEKFQSEAFKWDMKLNSALAINDEQKNQFEVS
                     YATQANENNYDSTSIYTETVSDYEKVNMVRIKVKTQINAGEAQTFKVPLKVDETFDSA
                     TEGNKIGERDVYNPFYRVITNTFSGSLSGTKVGAELVIGEVSGTLFNDKDVNGIYEKA
                     KGDEPLANETVELYKWNDATSNYEPAKKAGENVTTKTNSDGKYSFDYNSGVGYGNYAV
                     KFPEKAGYQFTLKNVGKDVTLDSDVPYSGAEKGWNKEIDPTQPNAQYINAGYYAYNPT
                     QDLKVNLNEKQVQMGRSLEITLPKVASTTGQAAEDTIEPSFFKNIKAATNGYKWTVAD
                     TNVATVQTLADGSAAVVGVSTNNKTIDVTDLTITIQDIFGTEQSSTAPVYVTGTEGQV
                     AQQDGYTMGATDFSMEYKEATELTKAQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVS
                     QTQLDAIKNGSNQGSVYPLTYSITKDSKTVSVTIQVTVAKDLTAVNAHDSTIYIGDAW
                     EEKDNFDSATNKEGATDIAFSDVTVTGSVNTAVAGVYPVTYTYNGVSKKINVTVKAIK
                     TAVNAHDSTIYTGDTWNARDNFDSALDKDGNSVAFADVTVTGSVNTNETGTNTITYSY
                     DGVSQTITVTVVENKEGISAHDSTIYAGESWNAKDNFDSAFDKDGNAVDLEDVTVTEK
                     PTVDTTKAGAYEVTYKYGKVSKKITLTVKAKLTAVNAHDSAIYIGDTWSAEDNFDSAL
                     DIDGNSVAFADVEVKGTVDTDKAGTYPVTYTYDGVSKTINIQVKDILTAVNAHDSEIY
                     IGDNWNAKDNFDSAQDKDGNTVNWNEINVSENPAVDLETVGVYQVTYSYGGVSKTINL
                     TVHPRKTSLEVHDSTMYTGDKWKAEDNFDNATDKKGDQIPFKDVTVTGQVDSKTAGTY
                     EISYIYDGLKKVARITVIKNQAQITVKDSVIPYGGKWEAEANFIGATNRDGVAIPFSK
                     IKVDGTVDVNKAGTYKVIYTYDPNEGTADAGKKELSVTANIQVEAEFVKPIKPVDPSK
                     PTDPKKPSTEKTPLKVVDNKQHTATYEAAKPLPKTGDQTNNWVIWTGICLLSMSMLLW
                     VVMRGRKKNYQ"
BASE COUNT         3980 a         2844 c         2357 g         4875 t
ORIGIN      
        1 acgcatttta ttaacaatca ccgcagtttg tacagttttt agtatcgtcg gtggctacgt
       61 attctttacg agtcaacaaa ctactacatc agaaaataaa agtgctgttt ctaaaaaaaa
      121 gccaccaacc acaaaaaatg aaaaaccaaa acaaccacca aacaaattaa cacttggcaa
      181 aaataaagag aactcccatt tagaaaaaaa cttcggaggt aagcaattac aagtcgaagg
      241 tatagacgac cgagctttcc aaagttcgct caaaaaaaga accgaaatta aaatgaaacc
      301 agaaaaagca ccaccaaaaa aacaggacat taaaccggta aaaccaatac caagcaaacc
      361 ggaaaaagaa gaagattcat ctagtcccat ttatgaaaaa gcgcgtatta tgacgccgat
      421 taataatcaa ttagataagt tagatttggc tgttcttgaa gcaaaagaac cacttatcat
      481 tggtgctgat gttacaaaac tccaacaact cattgcgaca aaacaactta gctacaaaga
      541 attagccggt atttatttaa atcgaatcaa gaaatatgac caaaatggcc taactctaaa
      601 tgcaataacc gaaatcaacc ccactattat tgcggaggca gaacaactag ataaagataa
      661 ttcagccaac aaatctgctt tatacggtat gccagtcctt ttaaaagata acatcggcac
      721 aaaagaactc cccacaagtg ctgggactgt tgctttaaaa gattgggtaa tcggggagga
      781 cgctacaatt gttgaaaatc taaaagcaaa tggtgcttta attctcggaa aaaccaatat
      841 gtctgagtgg gcagctggaa tggacgaaga acttccaaac ggctactcag gtaaaaaagg
      901 ccaaagcaaa aatccttatt cgtcggactt ggatccctct ggttcgagtt ctggatccgc
      961 tactggagca acaagtgatt ttgcagcaat tgcaatcggt acagaaacaa atggttcgat
     1021 tattatacct gcgtctgctc aatctgctgt tgggtataag ccatctcaag gtttaataaa
     1081 taacaaaggt attattccct tatcaagcag atttgataca cccggaccac taacaagaac
     1141 tgttaatgat gcctatttga cgacaaatgc tctaataaat actacttcca atccaccgct
     1201 ttctacggat tctcttcaag gtaaacgtat cggtctttta gcggatggcg aaagcaatga
     1261 agaaacagca gttataaaaa aaataaaata tgatttgaaa aaagcaggtg ctattatcat
     1321 tgaaggtgtt gcagtaggtg aatttgaaca gttagatact gattatgcct tattactaaa
     1381 tgctgacttt aaacatgatt tgaatcagtt tttgaatgtg aacaacgctc ctatgacgac
     1441 gttagaatca attattcaat ttaatcagac caacccagcg agaaatatga aatacggcca
     1501 atccgaactt gtcaaatcac aacaaagcac aactacgaag ctacaagcag acagtttggc
     1561 gagtaatttg attcaggagg cgcaaaacga acttgactct atgcttcaaa aagataaact
     1621 ggatgcggtc gtaacaattg gcatgggagg ttccgtgacg tttctagcac ccattgcagg
     1681 aaacccagaa ctgactatcc cagctggcta tgatgaagaa acaaatcaac cgattagctt
     1741 aacttttatt acagctagaa atagtgatac aaccttatta aatatggggt attcctatga
     1801 acaacaatcg aaaaacagaa aaagtcctaa tttaaagtaa aaaaaagcaa gatgcttttg
     1861 gaaattccag agtcatcttg ctttttgttt ataatacttt atctaagaaa ctaatcgttc
     1921 tttcgttggt tgggttatca aaaatatcag ccggcttgcc ttcttcaaca atatagccac
     1981 catccataaa gataactcgg tcgccaactt cacgagcaaa acccatttcg tgtgtaacaa
     2041 tcatcatcgt catgccgcct ttagctaatt ctttcataac gcctaaaact tcccctacca
     2101 tttctggatc aagcgctgac gttggctcat cgaacaacat aatatcagga tccattgcaa
     2161 gtgctctcgc aatcgccacc cgttgttttt gtccaccaga cagttgatta ggaaattctt
     2221 ctgctttttc tcgtaagcca acttgttcta ataaacgtaa agcattactt ttcgcggctt
     2281 ctttatccat ttttttcaat tcaacaggtg ctaatgtgat attttctaaa acagacaaat
     2341 gcgggaaaag attaaaatgt tggaaaacca tgccgatatt ttcgcgaact ttattgatgt
     2401 ccactttttt atccgtaata ttaaaatcat cgaccactac ttcgccagca gtaatttctt
     2461 ccaagttatt catacaacga agaaatgtac ttttaccaga tccagaaggt ccgatgacac
     2521 aaactacttc gccttctttt acttctatat caatgccttt taagacttca tttgcgccaa
     2581 aactcttttt cagtccagtt actttaagtt tagtcatttc gtaatctcct ttctaaacga
     2641 tcggatattt tcgttaaaat ggtaataacg ataaggtaca taattccgat gattagccat
     2701 gtccaagtac tttcgaatgt acgcgccata atgattttac ccgattgtgt tagttcgacg
     2761 agtccaatgg ccgacataat tgatgtatct ttaagcgtga taacaaattg gttaataaag
     2821 gatggaatca tcattcgaat tgcttgcggt agaacaactt tcatcatagc ttttttatgt
     2881 ggtaaaccaa gacttcttgc tgcttccatt tgtcctttgt cgactgattg aataccaccg
     2941 cgaacgattt cgaccatgta ggcaccggcg ttcaagctta gcgcgataac cccggctaag
     3001 aatacaggca tcctgaaatc aagtgctgct ggaataccaa agtagaagaa gaatgcttgt
     3061 acaattaatg gtgttccacg gaagatatcg acataaacag tcgcaatccc gcgcaagatt
     3121 ttgctattgc tcactttcat aaatccgaat gtaatcccaa taatgaaggc gattattagc
     3181 gaaactacgg ctaatctaat cgtcaaccac aaaccggata atagtgctgg ccaagaagat
     3241 ttaataattc ccataaagcc tttttcagtt gtattttctt taatcgcatt tttacctaag
     3301 tagttttcta aaattttatc atattcgccg cttgctttaa tattaactaa tccagcattg
     3361 aatttctcta aaagttcttg atttttgcct ttgttgacag caaaaccata ggagtttcct
     3421 ttttctttct cagtaacaat ttttaaaccg ttacctgttt gaacgccgta agctagtacg
     3481 ggataatcat caaaacatgc tacagaattt cttgttttaa catcgtcata catttgagct
     3541 gagtcatcaa acacaacaat atcaaagtcg tatttatctt tgattttttc tgcgaaggcg
     3601 taaccttctg tacctgtttt aacagctact ttttttcctt ttaagtcgtc gtaagttttg
     3661 atttcgtcgt tatctttcaa aatccccata acgacaccag aatcaaagta tggatcggag
     3721 aaatcaaact tttgcttacg ttcgtctgta atactcatcc cagcgataac accgtctact
     3781 tggttagctt ctagtgcttg taccgctgca ttgaatccca ttgctttaat ttcatattta
     3841 aaattttggt cttttgcaat tgcttttagg atgtccatat caattccgac atgttctcca
     3901 tctttctcaa attcaaaagg tgcaaaggtt gtgtctgtac caatcaagta agtttcttcc
     3961 gcagcttttg catttaaccc gtttcctgtg aaaataaatg cggcaacaca agcgattgcc
     4021 atcattagta tgaagcgtga aaatttcttc atattgtgtc ctccctctat atgtgtttaa
     4081 ctttaattaa atgttttatg tagcataaat tttttccgta ctcgtaagat tttaccataa
     4141 gggtaggtta ttgaccatag ttatttaaga taagattttc aacacaacaa agagaagaag
     4201 ctaatcgtta aaaattagct tctaatgatt gtttagttgt atttcaaaat catattcttt
     4261 catttttgcg taagcaatat aagcactttt cgcattttcg atagccaggt ctacttgttt
     4321 cttcttaccg cctttttgtg gaaataaaca agcttttcta agctgctcat tcagtaagct
     4381 cttatctatt ttttcagcga ttaacaactc ttttggtcga atattgttag gatctttata
     4441 aaattgattg agaaatttgg ctaaatcttc ttgaagggat ttttcaattt ggaaaacgtg
     4501 ccatttactt ccattgattg cgccatttcg aacgaagaaa acgaagacac ttaaatggtt
     4561 atcttgttca tagcaaccaa tgatatcccg attttttagg ccaggaaaaa taatatgttg
     4621 cttttcgatt gtctcattaa tagcgtgtat tttatctcga agttctgccg ccctttcgaa
     4681 ttcaagattt tcggttgcag ttaacatgtc ccccagtagt ttatccttca catttttcac
     4741 gtcgccttca agaaaacgac taattttatg gatctgtttt ttataaactg ccggatcaat
     4801 ttcggcttgg catggaccta agcataatcc aagatggtag tacaaacatg gtcgtcctgg
     4861 cttaccgtca catcgacaaa gtggaaacaa tttttcaatt aggtccaccg tctgtcttgc
     4921 ggaaaaacga cctggataag gaccaaaata atgcgcgccg tctcgcttta cttcaaacac
     4981 aacttcgata tgcggatttt tttcgttcgt aattttgata tatgggtagc tcgttccttc
     5041 ttttagctgg atattaaaag gtggctggta tttttgaatt aagatcattt cgagtagtaa
     5101 agcttctttt tcggaggttg taataattaa ttctaaatct cgaatttgcc taacaagtct
     5161 tgcagttttc ccaatttgtt tgctatgaaa ataagacttt acacggtttt tcaaacattt
     5221 agatttacca atataaagaa tttcattatt ttcatctcta taaatataac aacctggtga
     5281 ttcaggtaat aaggtcaatt tcttttgtaa tttatcgtcc aaagggctcc ccctccttct
     5341 agaacatcta ttctatccct agtcatcctt tttgtaaaga cacaaaaaga actagcacaa
     5401 actcttcggc tagttctcct catttattat tcgccccaga tatctttcgc aagccggaca
     5461 acatatcgca atttatccca ctgctcttct tccgtcaaaa tattgccttc ttctgtcgag
     5521 gcgaaaccgc attgcgggct taagcgcaac tggcttagag gcacaatttc actcgcttct
     5581 tcaatccgtg ctttaatggc tgcctcgtcc tctaattcac ctgttttgga tgtaattaag
     5641 cctagaacga ttttcaagtc tggacgggtg acatttttta gtggcgcaaa atctccagaa
     5701 cgttcattat catactccaa aaagaaacca tcgatattta gtttgccaaa taacgtttct
     5761 gcaacggggc catagccgcc ctctgcaatc caagtggagc ggaaattccc acgacaaatg
     5821 tgcatcgtaa tgaccatatc agctggttta tatttgatag catcattgat aagattttta
     5881 tatgtttctt gtaaagtatc tgggtcaaaa cctctctggc gaacgacttc acgctgttca
     5941 tcagagcata aataactcca cgacgtatca tctaattgca agtaccgaca accggcatca
     6001 taaaatgctt gaatcgcttt ttgatacgca acagctaaat ctttggcaaa cttctccgca
     6061 tcatctaaat aaggctgata ctctatatcc ccacgataat gaagcatcgc tgggcttgga
     6121 atagtttgtt tcgcgacatg cttgtcaccc acagcctctt taagaaaaat aaaatcttct
     6181 ataaatggat gtgtcgtaaa gtcaattggt ccggtaattt ttaccgaatg tgattttgtt
     6241 tggactttgc tgaattgaat acctccagcc gcatcgtacc cttctacccc gtccaaattt
     6301 tccaagaagt caaaatgcca ccacgcacga cgaaattcgc catctgtgat tgattttaag
     6361 cccacttctt tctgtttttc aacgatatat ttaatttctg tattttcgat tttgcgcaac
     6421 tctgagactg ttatttcacc actttggaat ttctctcgtg cgtccttaat tccctttgtt
     6481 cttaatatac ttcccacatg atctgcataa aatggtgcta gttgattcat tttcttcgcc
     6541 tcaattctca ttatttttat gtataaaaaa actttccctt aaaagacagc ttttaaggga
     6601 aagagtaatt tacctgattc gcgtgcctta tctgtcagtg ttacctgctg gatttggcac
     6661 cgtgaaactt ccggttgcca aggcttcacg gggccagaac cctccacctt tcttgataag
     6721 ttgctatgta attggttctt attatatcgt ttatttcttg tggttgtcaa atttatttct
     6781 gaatatttat gcttctgcga taacttcgat ttcaattgca gcatcaagcg gtaattttgc
     6841 tacttggaaa gcacttctcg cgggaaaatc actagaaaag aatgtcgcat acacttcatt
     6901 cacggcctta aattcattta aatctttgaa gaaaacagtt gctttaataa ttttgtccag
     6961 tccagaacca gcttctgcta atactgctgc tatattttta aaagcttgct cggcttgttt
     7021 tgtcgtgcca tctgctaatt cgccggtttc cgggttaata ccgagttgac ctgatgtaaa
     7081 aataagtcca ttcactttta cagcttgcga gtatggtcca agtgcttttg gggctgacga
     7141 tgtttgaata atttcttttg ccattttatc cctgctttct tttatggtat gcttttattc
     7201 taatcaataa agtttgtttt agcaatgaag ggggatttct aaatgatttt aacgatatat
     7261 ttaatcgcga taacgcttgt ttcttttcta ttattcgctg ttgataaacg gaaagcaatt
     7321 aaacacgctt accggatacc tgaatctgta ctgcttttca ccgcttttct tggtggggcg
     7381 tttggtagct ggatgtcgat gcaactattt caccataaaa cccaaaaacc aaagttccgg
     7441 attttagtgc cgcttgcgat ggtttggact gttggaatgg tgatttggtg gttgtactga
     7501 attaacaaat cagtagcatt acctcaaaaa aacatcaatt aacttctata tttctcgata
     7561 aaaaaatacc gaccagaaaa atctggtcgg tatttagttt accttcttat tgtctttcct
     7621 ttatctgttg gttcctctta ctgatagttt ttctttcttc ctctcattac cacccataga
     7681 agcatgctca tacttagcaa gcaaatgcct gtccagatta cccaattatt tgtttggtct
     7741 cctgtttttg gtaatggttt tgctgcttca tatgttgcag tatgttgctt gttatcaact
     7801 actttcaatg gtgttttttc tgttgatggt tttttaggat ctgttggttt tgatgggtca
     7861 actggtttta taggttttac aaattctgct tctacttgaa tattagctgt aacagaaagt
     7921 tctttcttac ctgcatccgc tgttccttca ttcggatcat acgtataaat cactttgtac
     7981 gtaccagctt tatttacatc tactgtacca tctactttaa ttttggagaa aggaattgct
     8041 acaccatctc ggtttgtcgc acctataaaa ttagcttctg cttcccattt tcctccgtat
     8101 ggaatgacgc tatcttttac agtgatttgt gcttgatttt tgattacagt aattcgtgct
     8161 acttttttca atccatcata gatatagctt atttcatacg tgcctgctgt tttagaatca
     8221 acttgtccgg ttacagttac atctttgaaa ggaatttggt cacctttttt atctgtagca
     8281 ttatcaaagt tgtcttctgc tttccattta tctcctgtat acattgtgga gtcatggact
     8341 tctagacttg tttttcttgg atgaacagtc agattaattg tcttcgaaac accgccataa
     8401 ctataagtca cttggtaaac accaactgtt tctaaatcaa ctgctggatt ttccgaaaca
     8461 ttgatttcat tccaatttac tgtgtttccg tctttatctt gggcactgtc aaaattatct
     8521 ttggcattcc agttgtcccc tatataaatt tcagaatcat gcgcgttcac cgctgttaag
     8581 atgtctttta cttggatatt aattgttttt gagacaccgt catatgtgta cgtgactgga
     8641 tatgttccag ctttgtctgt atcaacggtt cctttaactt cgacatcagc aaaagcgaca
     8701 gaattgccat ctatatccag cgcactgtca aagttatctt ctgcactcca cgtatctccg
     8761 atgtaaatcg cggaatcatg tgcgttgact gctgttaatt tagctttcac tgttaaagtg
     8821 atttttttcg atacttttcc atatttgtaa gtgacttcgt aagcacctgc ttttgttgta
     8881 tcaacggttg gtttttctgt gactgtaacg tcttctaggt caaccgcatt cccatcttta
     8941 tcaaaagcgc tgtcgaagtt atcttttgca ttccatgatt ctcctgcata gattgtagaa
     9001 tcatgtgcac tgataccttc tttattttct acaacagtaa ctgtaatagt ttgagaaacg
     9061 ccatcgtagc tataagtgat agtatttgta ccagtttcat ttgtattaac gcttcctgtc
     9121 actgttacat cagcaaaggc aacagaatta ccatctttat caagcgcact atcaaagtta
     9181 tctctcgcat tccatgtgtc acctgtatag attgtggaat catgtgcgtt cactgctgtt
     9241 tttatagctt tgacagtaac attaattttt ttagagacgc cattgtaagt gtaggtcact
     9301 ggataaacac cggctactgc tgtattcaca cttcctgtaa ctgtcacatc gctaaacgct
     9361 atatcagtgg caccttcttt atttgtcgca ctatcaaagt tgtctttttc ttcccatgca
     9421 tctcctatat aaatagtaga atcatgtgcg ttcaccgctg ttaaatcttt cgctaccgtt
     9481 acttgaatag ttactgagac agttttgcta tctttagtta tcgagtaagt taatggatac
     9541 acactacctt ggttggaacc attttttatt gcatctagtt gtgtttgact cacttgtact
     9601 gaatctaaac gatcttctgc gcttgaatta acaccatctt ttacttcttc aaaagcggct
     9661 gttttcgcga gagttagtgc ctgagctttc gttaattcag tggcttcttt atactccatc
     9721 gaaaagtcag tcgcacccat agtgtaaccg tcttgttgcg caacctgtcc ctcggttcca
     9781 gtaacatata ctggagctgt ggagctttgt tctgtaccaa aaatatcttg aattgtaatc
     9841 gttaaatccg ttacgtcaat cgttttattg tttgtggaaa cacctacgac agcagctgat
     9901 ccatcagcta acgtttgtac tgtcgctaca ttggtatctg caacagtcca tttgtagcca
     9961 tttgttgctg ctttaatatt cttaaagaag cttggttcaa tggtatcttc ggcagcttgt
    10021 ccagtggttg aagctacttt tggtaaagtg atttctaagc tgcgacccat ttgaacttgt
    10081 ttttcattta agttaacttt taaatcttgc gtaggattat aagcatagta tcccgcattg
    10141 atatattgtg cgtttggttg tgttggatca atttctttat tccaaccttt ttctgcaccg
    10201 ctgtatggta catcactgtc taatgtgaca tcttttccta catttttcaa cgtaaattga
    10261 taacctgctt tttctgggaa tttcacagca taattaccat agcctacacc agaattgtaa
    10321 tcaaagctgt atttcccatc actattagtt ttagtagtta cattttctcc cgctttctta
    10381 gcaggttcat aattagaggt tgcatcattc cacttataaa gctccactgt ttcattagct
    10441 aatggttcat caccttttgc tttttcataa atcccgttaa catctttgtc attaaataat
    10501 gttcccgaaa cttcgccaat gacaagttca gcccctactt ttgttcctga taatgaacca
    10561 gagaaagtat tggttattac tcggtagaaa ggattgtaaa catcacgttc accaatctta
    10621 ttcccttccg tcgcagaatc aaaagtttcg tctactttaa gtggaacttt gaaagtttgt
    10681 gcttctccag cattaatttg cgtttttact ttaattcgaa ccatatttac tttttcataa
    10741 tctgacactg tctctgtata aatactagtt gagtcataat tattttcatt ggcttgcgtt
    10801 gcatagctca cttcaaattg atttttctgt tcgtcattaa ttgcaagtgc gctatttaac
    10861 ttcatgtccc acttaaatgc ttcactttgg aatttttctc cgaagttttg accagttttt
    10921 gggattggaa tataaagttc aaaagtggtt gcttccccat tagatgcgtt agtgatttga
    10981 actgtgtatt cagcatctgt tcctggtgtg aagtaagaaa ctgtactatc atcgccttca
    11041 gtataagctg ctttttctcc ttctccagct atgctcaaga aagtttccac tgcaacggtg
    11101 tcttgttttg gaacacttaa agtactactg ttaacagaaa gtaatttttc attgtctttg
    11161 ccatttttat taacatctag acctacatct gaaaagttat tattggcaat tgcggaagca
    11221 acattggggc cgccccatgc aaggacttct tgtgcatcca tattgatact cttagctaat
    11281 gttacatcaa atgttgtgtc gtaactgata tttagaaatt tactcttagc cgggtatccc
    11341 gtaaatgccc ctacggaaac atccgttgtc tttaatacat aaaccttatc tccattattt
    11401 gccgtttcct gctgaatgga gaaattaaca tctttcccat cttggtctgt cagtttaata
    11461 gaagaaggca gaacttttgt accttctaaa gcacgtaaat atacttctgg attattgagt
    11521 acagttctag tcccataagg atagtctgat aaaagtaatg ttgcttttgt tttaatggtt
    11581 tctcctggac tagctgtttt tactacatta ccagctttat cgtagaaagc agccgtacca
    11641 tttgctgcgg tactttctgt atttaaaaca ctataagttg atgtcgcaga agattttgtt
    11701 tcggcctcat catcagcatc ccaaatggaa cctttatatt gaactgatgt aattcctggc
    11761 ttaacttttc cgtacgaaac agttgagttc caacgatagg tagccgaagc ttctgtattc
    11821 tgatatccag gtgaaaagtc tcccacattc gctttcactt ctgtgaaata ctcaccttct
    11881 tgaagctcca ctgcgtttgc atctaagcga tacatttggt tattattttt agtgagcgct
    11941 ccttcatacg ttcggaatgt gtcgtttaaa tttgttttat attgaacatc agttatttta
    12001 ttttctgaaa tggtgctatc aaaagggata ttgaccatgt aggcttccca gttaggatca
    12061 aattcaatgt gatacatttg atttttcttc acaccagatg ttcttttatt atcgatttgg
    12121 atactaccag cccaagtttc gttatccggg ttgattgttc catttgctga aaataaattc
    12181 attttattat tggaagtatc aactacttta caagtatcta gaggagctaa agtagttaaa
    12241 tcattagtat tgttagttaa tgcatcggtt tcgaatactt ctccatcata cgttgtgata
    12301 accgcatgtg gcgcttttgc agtgctataa gttccaacag gcgttccttt aggcacttta
    12361 tatttgactc cgtaaataga attattcgct gagttgaaat ttaattgctt acaatcaact
    12421 acaaccttat tttcacttgg ataattagta atagttaggt tggaattatc cgttaaaggc
    12481 gtaccaccat gattcacaac gtttacaaac tccatacctt ctggataata aagcgtcatc
    12541 tctatgtttt ttgctagata atacgctgat ccacggttgt ctaaattatt taatccattc
    12601 acaacagagt aagattttgt atagttataa gaatctgttg tatctgtgct tgcaagtact
    12661 tctgttagcc tttgattact ataccaagtt cggaacatag ttttcacatg atcctgattc
    12721 gtataaccta caaccttatt tccttccgca tgaatcgctt gttccgcgga agcaactggt
    12781 gaagttgtct cacccataaa aatttctgtt tttattggag tggctaagtc aactgctccg
    12841 taatattttg ctgcatctac tcgtacagaa aaagtaaagc tcgctttttc agttcctgga
    12901 cttagctcat aactaactgt tccaaaagtg gcttgattat atgctttttc tttatcaggt
    12961 acttttaccg aagtaatggc tattcctagt ggatcacttg cccctaaatg acttaaaacc
    13021 cctttgtcta cattcgaacc agcctgatag ttgctcggca ctggcaaaga aacaaaacgc
    13081 attccatctg gtaaagtgaa atttactttt ttgccagtag aagtattgtc gccaaagttt
    13141 actgttgcag ttacttcttt aatatcaccg tttgcccatg ctgtttggtc ataatcaggt
    13201 atttttaaat caaccgttgt ttgtcctgct ttaagtgatt ttagattttt gttactatct
    13261 ttagtagaag gaggttgaat attatcagct tctttttcag ttaccttctc tgttgtatta
    13321 tctttatttg cttcatcatc tgaaactata tcatttactt cataagaagc agtatatttt
    13381 ttagtttctg ctttttcttc gcttgcatct tgataattaa ttaagaaatt agttgtgcca
    13441 tttttttcgg ctttatagct tacttcttgg ccttctttct tctctccatc aggtgtttca
    13501 atggtaagga ttttcacctg atcgtttttt ggtgttactt taatggttaa atcagctgat
    13561 tttttatctt cagccaattt ggactgaact tcataagtta gctcatcatt cccattttct
    13621 tttgcaaaaa ccttaagcgc tgttaaattt aattgtccta gtactaggaa aaatgccatt
    13681 aacagtacga ggtaatgccg tgctctagtt gctttaatca taaagagttc tctcctcaaa
    13741 gtatatttta tagttgcgaa ataatgtgta atcacattgc aactcttata ttacttgcta
    13801 aaaacttcta tgtacatatg actaaaatga gtttttaaaa taaagaatga atataagaat
    13861 tttatacaaa agttcgtcat ataaaaaagc ggtttccgac acaattccga catatttaac
    13921 aaatgaagaa tcgttagtaa tttttaaaag attctccact tccctttttc agagccattc
    13981 accaataaaa ttcaccacat acacaattca tctcatcgtt tttttacctt tttagtactt
    14041 tttccaataa aacaac
//
LOCUS       DABQVC010000060        14040 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.060,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000060 DABQVC010000000
VERSION     DABQVC010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14040
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.060"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            40..717
                     /gene="budA"
                     /locus_tag="IBJ56_001267"
     CDS             40..717
                     /gene="budA"
                     /locus_tag="IBJ56_001267"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003758292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HAM3417525.1"
                     /translation="MAALVGGLFSGTTSFKELLQHGDLGIGTLDQFDGELIILDGEAF
                     QIRSDGQAYKVKPEDTTPYASTTFFDADTSFSVSEPTSKQAVEEKIAELVQGPNVFYA
                     VKMTGNFRYVDTRVVPKQQRPYPPLIEAVKEQPTYHFEYITGTIVGFWTPAYISGIGV
                     SGYHVHFIDDMRKIGGHVFDYEMLEGTVEVAQQTEFELQLPQTTEFLRSDLSTPDMLE
                     QIEAAEN"
     gene            complement(754..2055)
                     /locus_tag="IBJ56_001268"
     CDS             complement(754..2055)
                     /locus_tag="IBJ56_001268"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HAM3417526.1"
                     /translation="MRMVDIISKKRDGKALSTEEIQFFIDGYTNGEIPDYQASALAMA
                     IFFQDMNDQERADLTMAMVGSGDTIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAAV
                     GVPVAKMSGRGLGHTGGTIDKLESIEGFHIELDKKDFIDLVNRDKVAVIGQSGNLTPA
                     DKKMYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTDEDAENLA
                     HAMVRIGNNVGRNTMAVISDMSQPLGEAIGNALEVKEAIDTLKGQGPEDLTELVLVLG
                     SQMVVLAKQAETLDEARAKLIEVIENGAALEKFKTFLSNQGGDASIVDHPEKLPQAKY
                     QIEVPAKSSGFVSQIVADEIGIAAMILGAGRATKEDEINLAVGLMLRKKVGDAVKEGE
                     SLVTIFADQEDVENVKAKIYENIQISDHATAPTLVHKVITE"
     gene            complement(2186..3196)
                     /locus_tag="IBJ56_001269"
     CDS             complement(2186..3196)
                     /locus_tag="IBJ56_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HAM3417527.1"
                     /translation="MAATIREIAEKTGVSITTISQILNGKGERFSDLTREKVLKTAKE
                     MSYKPNFFAKNMIVSHTNTIGMIVPEVTDPFFSQMVKGAEDYLNKEGYMIMLCNSSND
                     KEREDLYVEELLHRAVDGLIIASPNILLSGVIKRMEEKRSPYILLDRQRNPRQEGNIA
                     IDDFKGGYMATEHLIKLGHTRIGIIISDTSFYNVHERYEGYLACMKDYKLTVKDTWIV
                     SGDQTMNGGYVATQKLLQENLSAIFATNDLMAMGTYRAALEKNLHIPTDLSVIGFDDI
                     ELSEYMTPPLTTIRQPIYGIGEIAAELLLKNLQNPTEKLENRLLDISLINRSSTKSID
                     NQ"
     gene            complement(3276..3947)
                     /gene="deoC"
                     /locus_tag="IBJ56_001270"
     CDS             complement(3276..3947)
                     /gene="deoC"
                     /locus_tag="IBJ56_001270"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HAM3417528.1"
                     /translation="MTIAKMIDHTALKPDTTKEQILTLTKEAREYGFASVCVNPTWVK
                     LSAEQLAGAESVVCTVIGFPLGANTPEVKAFEVKDAIQNGAKEVDMVINIGALKDKDD
                     ELVERDIRAVVDAAKGKALVKVIIETCLLTDEEKVRACEIAVKAGTDFVKTSTGFSTG
                     GATAEDIALMRKTVGPNIGVKASGGVRTKEDVEKMIEAGATRIGASAGVAIVSGEKPA
                     KPDNY"
     gene            complement(4010..4957)
                     /locus_tag="IBJ56_001271"
     CDS             complement(4010..4957)
                     /locus_tag="IBJ56_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HAM3417529.1"
                     /translation="MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNA
                     KTKGYVKIEVQDPFSNLTELAVALKEKYQLKNVTVAFSQTNDYSEITKQISQSAAEYL
                     EEIIHDGDILGVSWGTTMYKIAQKLAPLKAEIKVVQFKGGVSHSDVNTYAAETLALFG
                     AAYDTAPVSLPLPVVLDNPLAKQMVEADRHIKNIIELGKKANIAIFTVGTVRDEALLF
                     RLGYFSDQEKARLKEKAVGDICSRFFTIGGEIADEKMDERTIGIDLQDLKQKETAILV
                     AGGERKIKAIHGALRGGYANHFITDQFTAKQLLEQNFIN"
     gene            complement(5055..5471)
                     /locus_tag="IBJ56_001272"
     CDS             complement(5055..5471)
                     /locus_tag="IBJ56_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3417530.1"
                     /translation="MKAIFVCTHGNAAKELIQSAEMICGKQENTSFVPFEVNESAENL
                     QAKIASEVAKLDLTEGILFLTDLKGGTPFNVLVRLLRNFDAVELVAGVNIPLLLEAFL
                     SRETLSLKELANQVAETGRLGIYEYAAPLEEIEEDF"
     gene            complement(5488..6483)
                     /locus_tag="IBJ56_001273"
     CDS             complement(5488..6483)
                     /locus_tag="IBJ56_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HAM3417531.1"
                     /translation="MLKFDEQKVRENMEGALKLRPQINEVVDQIHDRGFSNICWLGIG
                     GTYASAMQAVVHMKEKTALETFYENAAVFLTTGNKRVTKDTLVVISSVTGSTQEVVDA
                     VKKCNEIGATVFGFIDKAEAELATLVDHLISYPLNEQLKFFMVADRFMYLAGEFEDYD
                     AFYQEMDQHFAEGIVEVEKAADKFGQEFALKHHQDDIHYFVGAGNQWGATYSYAMCYW
                     EEQHWIKTKSIESHEFFHGMFEIVERDTPVTIYVTEDSQRSLSERVVNFIPQICANYT
                     VIDAKDYDMPGISAKFRGALSPFIIHAVNNRIDVHVEKINCHPMEIRRYYRQLDY"
     gene            complement(6506..7570)
                     /locus_tag="IBJ56_001274"
     CDS             complement(6506..7570)
                     /locus_tag="IBJ56_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HAM3417532.1"
                     /translation="MKNMDYYIRSEQSVYENIIRSRKDLLQKVIQMEKVDYQAIVIFA
                     TGSSSNAAFAAQLYMSDKLAIPVYVEEPSTAGNYMLHLNKNTLYIAISQGGHSYSTIH
                     LVKEIERQGGIVFTLTSDLTSPIAKESTRAIDLGMGIEEMPYVTLGYSATILMLNLMA
                     LELALLQEKMLEEEYQAEIAELKKITANLPKVVEKSAAWVDAHTQELMEAERVFFIGY
                     GAAYGVAREGETKVTETIRITAFGKELEEYMHGPYIGLSEQDYIIFLEPQGLLEDRAE
                     KLKQFLQGHVKKIRTFYADAGGEKADDLLLGVRAAELLTPLFMTIPVHLLSFEISKKK
                     GINLEVSAFPEFDQITKSKI"
     gene            complement(7583..8404)
                     /locus_tag="IBJ56_001275"
     CDS             complement(7583..8404)
                     /locus_tag="IBJ56_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HAM3417533.1"
                     /translation="MKMKSSDVLTKKDLMKVFWRSFTMEWSWNYERQSNLGYGFSMLP
                     ALNKIFKNDKDKRISSYQRHLEFYNVTPWLSTFPLGISIAMEEQSAKDKDFDTDSINN
                     IKVALMGPLSGIGDSFFWGTLRVIATGIGTSLALQGNMLGPILFLLIFNIPAILTRYY
                     GLFIGYNIGANFIEKIQKTGLMDKLSYGASVIGLAVVGAMVATMVNINMPMKFGSGDD
                     AVTIQSVFDGIVPGILALGFTFFIFWLDKKGLKAHWILLLIAGIGILGAFTGLLK"
     gene            complement(8385..9203)
                     /locus_tag="IBJ56_001276"
     CDS             complement(8385..9203)
                     /locus_tag="IBJ56_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3417534.1"
                     /translation="MEQFGTAILLALAAMLANGEYLFGSSMLSRPLVTCTLAGLIMGD
                     VQMGIIMGATLELAFVGSFSIGASIPPEIISGSILGTAFAISTGESTAVALALGIPIA
                     SLVLVVKNLCFIFVLPYFVHKADKYALEGNSRGISRMQLLGGFLSINLPIGIIVATSY
                     LVGSPVIQNVLDAIPAFVITGLGIATGLLPAYGFALLLKLMVNKKNAVFFVFGFALAV
                     YLKVPVTGIAIFAACLALILTGYATLKNDNGPKNSNTEPALANDGGINYEDEEF"
     gene            complement(9226..9693)
                     /locus_tag="IBJ56_001277"
     CDS             complement(9226..9693)
                     /locus_tag="IBJ56_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417535.1"
                     /translation="MIQFLRVDHRLLHGQVAVSWFNALDVNTILVANDGVAADDFRKS
                     AIRLAKPEAAKLVMKSIDESIEAINSGVTDKYNMLIVVESVEDAYKLIHGTNGKIPML
                     NLGGTKQREGTANFSKAINLTPEEVAKLKELQKENVDVFMQQVPNEKKVTFEA"
     gene            complement(9713..10414)
                     /locus_tag="IBJ56_001278"
     CDS             complement(9713..10414)
                     /locus_tag="IBJ56_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3417536.1"
                     /translation="MGAKKPLFEVIASEIKDSINRDEYKPGMLMPNETALQEIFSSSR
                     TTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTAQNILEMTGVMKTDTNENLKKDIKDFY
                     IRKAGKFYAEKFGIKENELVYSIKFVQKSEHGVTLDRLILPLSLYPDLQAKDFQIINI
                     IELVNSGKYKLFELEQELQLILAGNEQIKNMHIDENDPVFKLSSVFYAENEMPIAIQY
                     HYEDAESTKYVVDFN"
     gene            complement(10416..11147)
                     /locus_tag="IBJ56_001279"
     CDS             complement(10416..11147)
                     /locus_tag="IBJ56_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3417537.1"
                     /translation="MEYKDLSPAVQSEEQLRQLIQEKVAAGETSFPSERALENELGVS
                     RTTLRRSLDTLEKEAVIQKRNRKGIEINQKQTINILQMNSMSSQLPGEQKVEVMSQEI
                     VAGKDEVNHFLNLSEDKPVFKLVRRRIVDNKPFSYEISFIDSTRFAGIEKIDLNNSSL
                     YNVLEKQFAIKPTYGREELRFVSANEKLAEALKVPLNTPLFEVVSKAFDQNDEPFEYS
                     KQYLIGNQIKYKINAKNIFDYLEDE"
     gene            complement(11320..12315)
                     /locus_tag="IBJ56_001280"
     CDS             complement(11320..12315)
                     /locus_tag="IBJ56_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAM3417538.1"
                     /translation="MEYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLNEANSRPII
                     KKALDLGINFFDTANIYSYGESEKIVGRALKDYANRDDVVLATKVQQTMRPDRPNSGG
                     LSRKTILSEIDHSLKRLETDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGAS
                     AMYAWQFQKAQRVAERNGWTKFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLA
                     SGRLTRDLNETTNRSETDPVQKSKYDDMMNADRGIIERVAELAETHQVSRDKIALAWL
                     LNKDEITSPIIGAQKESHLESAVEALNIQLTAAEVNYLEELYIPHPVVGALPTTK"
     gene            complement(12432..>14040)
                     /gene="alsS"
                     /locus_tag="IBJ56_001281"
     CDS             complement(12432..>14040)
                     /gene="alsS"
                     /locus_tag="IBJ56_001281"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetolactate synthase AlsS"
                     /protein_id="HAM3417539.1"
                     /translation="VTHVFGIPGAKIDKVFDVMEERGPELIVSRHEQNAAFMAAAIGR
                     LTGKPGVVLVTSGPGASNLATGLVTATAEGDPVVAIAGNVTRQDRLKKTHQSMDNAAL
                     FRPITKYSEEVVHAESIPEAITNAFRSAAEPNQGAAFVSLPQDIVNEPNVPVKAIRPL
                     AKPENGPASKEQVAKLVARLKKAKLPVLLLGMRASSPEVTGAIRRLLQKTSIPVVETF
                     QAAGVISRDLEDNFFGRVGLFRNQPGDILLNKADLVITVGYDPIEYDPKAWNASGDRT
                     IVHLDDIRADIDHYYQPVTELVGNIALTLDRVNAKFSGLELAEKELETLKELHAQLEE
                     RDVPPESDETNRVHPLSVIQTLRSAIDDNVTVTVDVGSHYIWMARHFRSYEPRRLLFS
                     NGMQTLGVALPWGIAATLVHPGEKVVSISGDGGFLFSAMELETAVRLRAPLVHLVWND
                     GSYDMVAFQQKMKYGKEAAVRFGDVDIVKFAESFGAKGLRVTKPSELSDVLKEALETE
                     GPVVVDIPIDYRDNIKLGETLLPDQFY"
BASE COUNT         3780 a         2991 c         2592 g         4677 t
ORIGIN      
        1 gacacagtta gaaaaaatcg attatttcag cattctacaa tggcagcact tgttggtggg
       61 ctttttagcg gaacaacgag tttcaaagaa ttattacaac acggtgacct cggtatagga
      121 acacttgacc aatttgatgg tgaattaatt attttagacg gagaagcttt tcaaatacga
      181 tcagacgggc aagcttataa agtaaagcca gaagatacga caccttatgc gagcaccact
      241 ttttttgatg ctgatacttc tttttccgtt tccgaaccga catcaaaaca agcggtggaa
      301 gaaaaaatcg cagaattagt acaaggacca aatgtttttt atgcagtgaa aatgaccggg
      361 aatttccgtt atgtggatac gcgcgttgta ccaaaacaac aaaggcctta tccgccactc
      421 attgaagcgg taaaagaaca accaacgtac cattttgaat atattacggg tacaattgtt
      481 ggtttttgga cgcccgctta tattagcggt attggcgttt ctggctatca tgtgcatttt
      541 attgacgata tgcgtaaaat cggcggtcat gtatttgatt atgaaatgct ggaaggtacc
      601 gtagaagttg cgcaacaaac agaatttgaa ctacaattac ctcaaacgac ggaattctta
      661 agaagtgatt taagtacgcc ggatatgttg gaacagattg aagccgcgga aaattgataa
      721 agaaagctcc caaattaaat tgggagcttt cttttattct gtaataactt tatgaacaag
      781 ggttggtgct gttgcgtggt cggaaatttg aatgttttcg tagatttttg cttttacgtt
      841 ttcgacatct tcttggtcag cgaaaatcgt tacgagtgat tcgccttcct taacagcatc
      901 gcccactttt ttgcgtagca ttaaacctac tgctagattg atttcgtctt ccttcgttgc
      961 gcgaccggcg cctaggatca ttgcagcaat gccaatttca tcggcaacga tttgacttac
     1021 gaagccagat gatttagcgg gtacttcgat ttggtatttt gcttgcggaa gtttttctgg
     1081 gtgatcaaca atgcttgcat cgccaccttg attggaaagg aatgttttga atttctcaag
     1141 tgctgcaccg ttttcgatta cttcaattaa tttagcgcgg gcttcgtcga gtgtttccgc
     1201 ttgtttggct agtacgacca tttgactacc aagtacaaga actaattctg ttaaatcttc
     1261 tggtccttgg ccttttaatg tatcgatggc ttcttttact tctaaagcat ttccgattgc
     1321 ttcgccaagt ggttgggaca tatcagaaat gactgccatc gtatttctac caacattatt
     1381 accgatgcga accattgcat gtgctaggtt ttcggcatcc tcgtcggttt tcataaatgc
     1441 accagcacct gtttttacat caagtacgat tgcatctgcg cccgctgcga tttttttact
     1501 cataatagag cttgcaatta gtggtattga gtttacggtt cctgttacat cacgaagcgc
     1561 gtacattttt ttatctgctg gtgtaagatt acctgattga ccaataactg ctactttgtc
     1621 gcgatttact aggtcaatga aatctttctt atctagttcg atatggaagc cttcgataga
     1681 ttctagttta tcaatggttc ctcctgtatg acctaagcca cggccagaca tctttgcaac
     1741 cggtacgcca actgctgcta cgagcggagc aagaacaagt gtcgtcgtat caccaacacc
     1801 gccagtacta tgtttatcga ctttgattcc ttcaattgcg gataggtcaa tcgtatcgcc
     1861 agagccaacc attgccattg ttaaatctgc gcgttcttga tcattcatat cttggaaaaa
     1921 gattgccatg gctagagcac ttgcttgata atctggaatt tccccatttg tatagccatc
     1981 aatgaaaaac tgaatttctt ctgttgataa agctttgccg tcccttttct tggaaataat
     2041 atccaccatt ctcatttctc ttcacccttt ctttttgtcc actttagcat tttatgtacc
     2101 tttattgaga acggttacac tttttaagta aaccgtttta ctaaacaaga acatgtgctt
     2161 aacatgctca ctataactta ctcccttact ggttgtcaat actttttgta ctactacggt
     2221 tgattagtga aatatcgagt aaacgattct ctaatttctc ggttggattt tggagatttt
     2281 tcagtaatag ttcggcagca atttcgccga taccatagat tggttgccga atggttgtaa
     2341 gtggcggtgt catatattcg gaaagttcaa tatcatcaaa tccgatgacg ctaagatcag
     2401 taggaatatg caggtttttt tcaagtgcgg ctcggtaggt tcccatcgcc attaaatcat
     2461 tggttgcaaa aatggcactc agattttctt ggagtaactt ttgcgtcgca acataaccgc
     2521 cattcatcgt ctgatccccg cttacaatcc aagtatcttt tacagtaagt ttatagtctt
     2581 tcatgcacgc caagtaaccc tcgtagcgtt catgtacgtt ataaaaagat gtatccgaaa
     2641 taatgattcc gatgcgcgta tggcctagtt tgattaaatg ctcggtcgcc atataaccgc
     2701 ctttgaaatc atcaatcgcg atattccctt cttgccttgg attccgctga cgatcgagta
     2761 aaatatacgg agaacgcttc tcttccatgc gtttgataac acctgaaagc agaatattag
     2821 ggctggcgat aattaagcca tcgacagccc ggtgcaataa ttcttctaca tataaatctt
     2881 cacgttcttt atcattagaa gagttacaga gcataatcat gtaaccttct ttattcaagt
     2941 aatcttcggc cccttttacc atttgtgaaa aaaaaggatc cgttacttcc gggacaatca
     3001 ttccgatggt gtttgtgtga ctaacaatca tatttttggc gaaaaagttt ggtttgtaag
     3061 acatctcttt tgctgttttc agaacttttt cacgagttaa gtcgctaaat cgttcccctt
     3121 taccattcaa aatttgagaa atcgtcgtaa ttgaaacgcc tgtcttttct gctatttcgc
     3181 ggatggttgc agccatttaa actcccccag tcagattatc tattctcctt attttgccac
     3241 atttaagaat aataataaag gggtttcatc caaaattagt aattatctgg tttggctggt
     3301 ttttcgccgg aaacaattgc gacacctgca cttgcgccaa tacgagttgc gcctgcttcg
     3361 atcatttttt ctacgtcttc tttcgtacga accccaccag atgcttttac gccgatgttt
     3421 ggtcctacag ttttacgcat taaggcgata tcttcggcag ttgcgccacc tgtggagaat
     3481 ccagtggatg ttttaacgaa gtctgttccc gcttttacag cgatttcaca tgcgcgaact
     3541 ttttcttcgt ctgttaatag gcaagtttcg ataattactt ttactaatgc ttttcctttg
     3601 gcagcatcga ctacagcgcg aatatcacgt tctactagtt cgtcgtcttt gtcttttagt
     3661 gcgccgatat taataaccat atccacttct tttgcaccgt tttggatagc atcttttact
     3721 tcaaatgctt ttacttcagg ggtattcgct cctagtggga aaccgataac agtacatact
     3781 acagattctg ctccagcaag ttgttcagcg gatagtttta cccaagttgg atttacgcat
     3841 acggaagcaa aaccgtattc tcttgcttct tttgttagtg ttaaaatttg ttctttcgtt
     3901 gtgtctggtt ttaaagcagt gtgatcgatc attttggcaa ttgtcatttt aaaaactcct
     3961 ttaaaattgg atttggtttc atcatatcgc actacagaac atttgtaaac taattgatga
     4021 aattttgttc aagtagttgt tttgcggtaa attggtcggt aataaaatga ttggcataac
     4081 cgcctcgaag tgcgccatga atcgctttta tttttcgttc accacctgcg acaagaatgg
     4141 ctgtttcttt ttgctttaaa tcttgcaagt cgataccaat ggttcgttcg tccattttct
     4201 cgtcagcgat ttcgccgcca attgtgaaaa atcgcgaaca aatatcgccg actgcttttt
     4261 cttttaagcg agccttttct tgatcggaaa aatagcctag gcggaatagc agggcctcat
     4321 cacgcacggt tcctactgta aaaatagcga tattggcttt tttaccgagt tcgatgatat
     4381 tttttatatg gcggtctgct tctaccattt gtttagcgag tggattatca aggactacag
     4441 gaagtggaag tgatactggc gcggtgtcat aagctgcacc gaataacgct aatgtttcgg
     4501 ccgcatacgt attgacatca gaatgactca caccaccttt aaattggacg acttttattt
     4561 ctgcttttag cggggctagt ttttgggcaa ttttgtacat cgttgttccc caacttacgc
     4621 caagaatatc gccatcatgg ataatttctt ctaagtattc agcggcactt tggctgattt
     4681 gcttggtgat ttcgctataa tcatttgttt gactgaacgc aacggtgaca tttttaagtt
     4741 ggtatttttc ttttaaagcc acggccagtt ctgttaggtt agaaaatgga tcttggactt
     4801 cgattttgac gtatcctttt gttttcgcgt tttggagtaa tctggaaacg gtcggtctgg
     4861 atacacctag gcgtgtggcg atttcttgct gacctagatc cgcctgataa taaagtctcg
     4921 caacctctac gctgagctgt tctttctgtt tatccatttc atccctccat cgttttcttt
     4981 ttagtataac gtaacagcgg ggatagttcg agagagaaga taaaaaaaag acagccgcgg
     5041 ctgtcttttt cctattaaaa atcttcttct atttcttcaa gcggcgcggc atattcataa
     5101 attcctaacc gcccagtttc ggcaacttga ttcgcaagtt cttttaagga tagcgtttca
     5161 cggctgagga atgcttctaa taaaagcgga atattcacgc ctgcgacaag ttctactgca
     5221 tcaaaattcc gaagtaaccg aacgagtaca ttaaacggag tcccaccttt taaatcagtt
     5281 agaaataaga tcccttctgt tagatcgagt ttagctactt cactggcaat tttcgcctgt
     5341 aaattttccg cggattcatt cacttcaaaa ggaacaaaac ttgtattttc ttgtttaccg
     5401 caaatcattt ctgcagattg aatgagttct tttgcggcat ttccatgggt acaaacaaaa
     5461 attgctttca tttttcaaac cgccttttta atagtctaac tgacgataat atcttctgat
     5521 ttccattgga tgacagttaa ttttttccac gtgtacgtca atgcgattat ttactgcgtg
     5581 gataataaat ggtgataacg ctcctctgaa tttggcggaa atacccggca tatcgtaatc
     5641 ttttgcatca atgactgtat aattggcaca gatttgcgga atgaaattaa ctactcgctc
     5701 gcttaaagaa cgctggctat cttctgtcac ataaatggta accggggtat cgcgttctac
     5761 aatttcaaac atgccatgga aaaactcgtg agactcaatt gattttgttt taatccagtg
     5821 ttgctcttcc caataacaca ttgcgtaaga ataggtcgcg ccccactggt tcccagcacc
     5881 aacgaaataa tgaatgtcgt cttgatgatg ttttagcgca aattcttgac caaatttatc
     5941 cgccgctttt tctacttcga caatcccttc agcaaaatgt tgatccattt cttgataaaa
     6001 cgcatcgtaa tcttcaaatt cgccagctaa atacataaaa cgatctgcta ccatgaagaa
     6061 ttttaattgt tcatttaacg gataggagat taagtgatct actaaagtcg caagttctgc
     6121 ttctgcttta tcaataaacc caaataccgt tgcgccaatt tcattacatt ttttcacagc
     6181 atctaccact tcttgcgtac ttccagttac cgatgaaatg actacaaggg tatctttagt
     6241 aacacgttta ttgcctgtcg ttagaaacac agcagcattt tcataaaaag tttctaatgc
     6301 cgttttttct ttcatatgca ccaccgcttg catggcggac gcgtatgtac cgccaattcc
     6361 tagccagcaa atattactaa agccgcggtc atgtatttgg tcaactactt cattaatttg
     6421 cgggcgtaat tttagcgctc cttccatgtt ttctctcact ttttgttcat caaattttag
     6481 cactattcat tcctactttc tttggttaaa ttttggattt cgttatttgg tcaaattctg
     6541 gaaaagcgga tacttctaaa ttaattcctt ttttcttgga aatttcaaag gataataaat
     6601 gaaccggaat agtcataaac agcggtgtca gaagttctgc tgcccgcaca ccgagtaata
     6661 aatcatctgc cttttccccg cctgcatccg cataaaatgt tcggattttc tttacatggc
     6721 cttgtaaaaa ttgttttaat ttttctgcgc ggtcttctag taagccttga ggttcaagga
     6781 agataatata gtcttgctcg gataaaccta tataaggtcc gtgcatatat tcttctaact
     6841 ccttaccaaa agctgtaatc cggatggttt ctgttacttt tgtttctcct tcgcgcgcta
     6901 caccataagc agcgccgtat cctatgaaga aaactcgttc cgcttccatc aattcctgtg
     6961 tatgcgcgtc tacccaagct gctgatttct ctaccacttt tggtaaatta gcggtaattt
     7021 ttttcaattc tgcaatttcc gcttgatatt cttcttccaa cattttctct tgtaaaaggg
     7081 ctagctcaag cgccattaaa ttcaacatga gaatggttgc gctataacca agcgtgacat
     7141 atggcatctc ttctatcccc atcccgagat caattgcccg cgtactttct ttcgcaatcg
     7201 ggcttgttaa gtcgctcgtt aaagtgaaaa caatgccacc ttgacgctca atttctttta
     7261 cgagatgaat agtggaataa ctgtgcccac cttgtgatat agcgatgtat aaggtgtttt
     7321 tgtttaagtg aagcatgtaa tttcctgcag tagacggttc ttccacatat acgggaatag
     7381 cgagtttatc cgacatatat aactgcgctg caaatgccgc attagaacta gaacctgttg
     7441 caaaaataac aattgcttga tagtccactt tctccatttg aatgaccttt tgtaaaagat
     7501 cttttcgact tcggatgata ttttcataaa cactttgttc cgaccggata taataatcca
     7561 tgtttttcat tttttcacct acttatttta ataaacctgt gaacgctcct aaaattccaa
     7621 ttcctgcgat taataaaaga atccaatgtg cttttagtcc ttttttatct aaccagaaaa
     7681 taaagaaggt gaagccaagt gctaggattc ctgggacgat accgtcaaaa acactttgaa
     7741 tcgttactgc atcatcacca gagccaaatt tcattggcat gttaatgttc accatcgtgg
     7801 cgaccattgc accaactacg gccagcccga taaccgaagc accataagac agtttatcca
     7861 ttaatccagt tttttgaatt ttttcgataa aattagctcc gatattgtag ccaataaata
     7921 atccataata acgagtcaga atagctggaa tattgaaaat aagaaggaac aaaatcggcc
     7981 ctaacatatt tccttgaagt gctaaggaag ttccaatacc tgtagcgata acgcgtaaag
     8041 ttccccagaa gaacgaatct ccaatcccac tcagcggtcc cattaacgct acttttatat
     8101 tattgatgga gtctgtgtca aaatctttat ctttcgcaga ttgttcctcc atcgcaatcg
     8161 aaatccctag cggaaaagtg gaaagccacg gtgttacgtt ataaaattct aaatgccttt
     8221 gataagaaga aattcgttta tctttatcat ttttaaaaat tttgtttaag gctggtagca
     8281 tggaaaatcc ataaccgaga ttggattgtc gttcgtagtt ccatgaccat tccatcgtga
     8341 acgagcgcca gaaaactttc attaagtctt tttttgttaa tacgtcagaa ctcttcatct
     8401 tcataattta tacctccatc attcgcaagt gctggctctg tattcgaatt ctttggacca
     8461 ttgtcatttt taagcgttgc ataacctgtt aaaattagcg ctaaacatgc agcgaaaatc
     8521 gctatgcctg ttacaggaac ttttaaataa acagctaatg cgaagccaaa tacgaaaaat
     8581 acggcattct tcttattgac cattaatttg agaagtaaag caaaaccata tgctggcagt
     8641 aaacctgtcg caattccaag tcctgttata acgaaagccg ggatggcatc aagtacgttt
     8701 tggatgactg ggcttccgac tagataggac gttgcgacaa taataccaat tggtaagttg
     8761 atcgataaaa atccgccgag cagttgcatt cgactgattc ctcgtgaatt accctcgagt
     8821 gcgtatttat ctgctttatg aacaaagtaa ggtaatacga aaatgaagca tagattttta
     8881 acgacaagta caagggaagc aatcggaatt ccaagtgcta atgctaccgc tgtgctctcg
     8941 ccagtcgaaa tcgcaaaggc tgttcctagt atacttcctg aaataatttc tggaggaata
     9001 gatgctccga tagaaaatga tcctacaaaa gctaattcca aagttgctcc cataataatc
     9061 cccatttgta catcacccat gataagtccg gcgagtgtac atgttaccag tggtcttgat
     9121 agcatcgatg aaccaaataa atattctcca tttgcaagca ttgctgcaag tgcaagcaaa
     9181 atcgctgttc caaactgttc cataatttat cccttctttc gtcttttatg cttcaaaggt
     9241 tacttttttc tcgttaggca cttgttgcat aaatacatct acattttctt tttgaagttc
     9301 ttttaacttc gctacttctt caggtgttaa attgattgct ttggaaaaat tagctgttcc
     9361 ttctcgttgc tttgttccgc ctagatttaa catcgggatt ttaccattcg taccatggat
     9421 taatttgtaa gcgtcttcaa ctgattcgac aacaataagc atgttgtatt tgtcagtgac
     9481 gccggaatta atcgcttcga tactttcatc gatacttttc atgactagtt ttgccgcctc
     9541 gggtttagca agacgtattg ccgacttacg gaaatcgtcc gccgctaccc catcatttgc
     9601 cactaaaatt gtatttacat ctaaagcatt aaaccaagac acagctactt gtccatgtag
     9661 taaacgatgg tccactctta gaaattgaat cattttttct tcctccttcg tattagttaa
     9721 aatcaactac atatttggtc gactcagcat cttcataatg atattggatg gcaattggca
     9781 tctcgttttc tgcataaaag acactactca atttgaaaac aggatcattt tcgtctatat
     9841 gcatattttt gatttgctca ttcccagcta aaataagttg aagttcctgc tcaagctcaa
     9901 ataatttata tttacctgaa ttaacaagct caataatatt aataatttga aaatcctttg
     9961 cttgtaaatc agggtataaa cttaacggta aaattaagcg atctagtgtg acaccatgct
    10021 cacttttttg gacaaacttg atagaataca caagttcatt ctcttttata ccaaacttct
    10081 ctgcgtaaaa ttttccagct ttacggatgt aaaagtcttt aatatctttt tttagatttt
    10141 cattggtatc ggttttcata acacctgtca tttctaaaat gttctgagct gttagttttg
    10201 gttgaacgta tagcccaaca ccgtttttac gaacaactaa accttcttcg actaatagat
    10261 ctaccgcgcg gcgaatcgtt gtccgactgc tagaaaaaat ttcttgcaag gctgtttcgt
    10321 tcggcattag cattcccggc ttatattcat cgcgattaat actatctttt atttctgaag
    10381 ctattacttc aaaaagtggc tttttagctc ccatttcact catcctccaa gtaatcaaat
    10441 atgtttttcg cattgatttt gtatttgatt tgattaccaa ttagatattg tttactgtac
    10501 tcaaaaggtt catcattttg atcaaatgct ttacttacta cttcaaaaag tggcgtgttt
    10561 agtggtacct ttaatgcttc tgctagcttt tcattcgctg atacaaagcg caattcttcg
    10621 cgcccgtagg taggtttaat agcaaactgc ttttctaaca cattgtataa cgaggaatta
    10681 tttaaatcga ttttctcaat accagcaaat ctcgtgctat caataaaaga tatttcatag
    10741 gaaaacggct tattatcaac tattcttcgc cgaaccaatt taaacaccgg cttatcttca
    10801 cttaagttta aaaagtggtt cacctcgtct ttgccggcta ctatttcttg tgacattact
    10861 tctacttttt gttctcccgg caattggctg ctcatggaat tcatttgcaa aatattgatt
    10921 gtttgctttt gattgatttc gattcctttt cggtttcttt tttggatgac cgcttctttt
    10981 tcaagggtat caagtgaccg tctgagtgta gttctactga cacctagttc gttttcaagc
    11041 gcacgttctg atgggaaact tgtttctccg gctgctactt tttcttggat aagctgtctt
    11101 agttgttctt cactttgcac tgctggcgac aagtctttat attccatatt tccacctctt
    11161 ttttcaaatc atctatctat ttcacttttt aaaaagatac agcttcaaac atttttaata
    11221 ccacttcatt gtaaacggtt gcattttgtt tgtcaatagt ctttttacat aaaaaaaagc
    11281 atgagtcaga tttttccatc caactcatgc tccatttgat tatttagttg taggtagtgc
    11341 tccaactact gggtgcggga tatataattc ttctagatag ttaacttccg ctgccgttaa
    11401 ttgaatattt agcgcctcta ccgcgctttc cagatgactt tctttttgtg caccgatgat
    11461 tggcgaagtg atttcatctt tatttaatag ccacgctaaa gcaatcttat ctcgagatac
    11521 ttgatgtgtt tccgcaagtt cagccacacg ttcaataata cctctatctg cattcatcat
    11581 gtcatcgtat ttggattttt gaactggatc cgtttcggaa cgattggttg tttcattcaa
    11641 atctcgcgtt aatcgtcctg atgctagcgg gctgtatggc gtaatcgcaa ttttttcatc
    11701 gcgacaaaat ggaatcattt ctcgctcttc ttcccggtaa atcatattgt aatgattttg
    11761 catggaaacg aattttgtcc aaccgtttct ttctgcgacg cgttgtgctt tttgaaactg
    11821 ccaagcatac atagcactcg ctccaatgta acgcgctttc ccggacttaa cgacatcgtg
    11881 taaagcttcc atcgtttctt cgattggcgt attttcatca aaacggtgaa tgatatataa
    11941 atctacataa tccgtttcta gtcgttttaa gctatggtcg atttcgctca aaatggtttt
    12001 cctggataag ccaccactat tcgggcgatc cgggcgcatt gtttgttgca ccttggttgc
    12061 taacacaaca tcatcgcggt tagcatagtc ttttagtgca cgtccaacga ttttttcact
    12121 ttcaccgtaa gaataaatat tcgccgtatc aaagaaattt atgcctaaat cgagtgcttt
    12181 ttttatgata gggcgactgt tcgcttcgtt caaaacccat ttatgaatcc atttgtcttt
    12241 atcaccgaac cccattgtcc ctaaacagat tttcgaaaca tccatgccag tgttgccaaa
    12301 tttaacatat tccattcaaa accctcctag ttaatttcta gtactattac agcataaacc
    12361 ttgaagtcca ctccaagtca acctttaact ataaaaaaat ctctcgggaa atccgagaga
    12421 tttttaacgt tttaataaaa ttggtcaggt agtaaagttt cgccgagttt gatgttatca
    12481 cggtaatcaa ttggaatatc tacaacgacg ggaccttctg tttcaagggc ttcttttaac
    12541 acatcactaa gttctgacgg tttagttacg cgaagtcctt ttgcaccgaa gctttcggcg
    12601 aatttaacaa tatcgacatc accaaaacga actgctgctt ctttgccgta tttcattttt
    12661 tgttggaagg cgaccatgtc atagctaccg tcattccata caaggtgcac aagtggcgca
    12721 cgcaagcgga cagctgtttc taattccatg gcagaaaata ggaagccacc gtcaccagaa
    12781 atcgaaacca ctttttcacc cggatgtacg agtgttgcag caatccccca aggaagcgcg
    12841 acaccaagcg tttgcatacc gttactgaaa agcagacggc gtggttcata ggaccggaaa
    12901 tgacgtgcca tccaaatata atgtgaacca acgtcgactg tcacagttac gttgtcatca
    12961 attgccgaac gcagcgtttg aatgaccgac aacggatgta ctcggttagt ttcatcactt
    13021 tctggtggaa catctcgttc ttctaattgg gcgtgaagtt cttttaaggt ttcaagttct
    13081 ttttccgcta attctaaacc gctgaatttc gcattcactc ggtctaaagt aagcgcgatg
    13141 tttccgacta attctgtcac aggttgatag tagtggtcaa tatctgctcg gatgtcatct
    13201 aaatgtacaa tcgttctatc acccgaagca ttccaggctt ttggatcata ttcaattgga
    13261 tcgtaaccta ctgtaataac taaatcagct ttatttagca aaatatcccc tggttggttg
    13321 cggaagagac ctacacgccc aaagaaatta tcttctaaat cacgtgagat gacaccagct
    13381 gcttggaagg tttctacaac tgggatgctt gttttttgga gtaggcgacg aatcgcacca
    13441 gttacttccg ggctagatgc tcgcatacct aatagcaata ctggtaattt cgcttttttc
    13501 aaacgagcaa cgagtttcgc aacttgttct ttggaagctg gaccattttc tggtttagca
    13561 agtgggcgaa tcgcttttac tggtacgttt ggttcattca cgatatcttg tggcaaactg
    13621 acaaaagcag cgccttggtt tggttctgcc gccgaacgaa aagcgttagt gattgcttcc
    13681 gggatacttt cagcgtgaac tacttcttcg ctatattttg taattggacg gaaaagtgct
    13741 gcattatcca ttgattgatg ggttttttta aggcggtctt gcctggttac atttccagct
    13801 atcgcaacga ctggatctcc ttcagcagtt gctgttacaa gtccagtggc aaggttcgat
    13861 gcgccgggtc cactagttac aagtacaaca ccaggttttc cggttagacg accgatagcg
    13921 gcagccataa acgccgcatt ttgctcatga cgactgacaa ttaattctgg tccacgttct
    13981 tccatcacat cgaaaacttt atcaattttt gctcctggaa tcccgaatac atgcgtaaca
//
LOCUS       DABQVC010000061        13991 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.061,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000061 DABQVC010000000
VERSION     DABQVC010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13991
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.061"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(84..1340)
                     /gene="vip"
                     /locus_tag="IBJ56_001282"
     CDS             complement(84..1340)
                     /gene="vip"
                     /locus_tag="IBJ56_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell invasion LPXTG protein Vip"
                     /protein_id="HAM3417540.1"
                     /translation="MNKYFKNLATVLFTVSLLTTSITALPAMASAYEETHNASTIYIS
                     PLDAPHVGDTKITGKTTALSSFAIAIYTPEGRLTGTFFGTTNAAGTYAVDLSDFTYYD
                     PLGYEASGNVILEKGAMVRSMTETNSDLIKTVTINYNYIQTAINELFLNNDPTGTILA
                     ATDQNAINAVQEQINTVTSSEKETFQEQLNNAQQQLDARIAQEQAAIQAVNQLFLEDN
                     PANSIKAETTQDLIDQAQTLVDVLPASELKDTLQANIVKAQTELDERSKPVTPPKNDP
                     ETDNPEEPVTPVDPATPTPDEPSTPTDPATPTPDEPSTPTDPATPEKPEITTPENPES
                     TVVESDSSENEPEKSADSKIVNNPIQITSQATKTATKQATKQAKSSVTKTTTLPIPKT
                     GDTETTSSILFGTLMLASLALFRRKK"
     gene            1669..2328
                     /locus_tag="IBJ56_001283"
     CDS             1669..2328
                     /locus_tag="IBJ56_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAP family protein"
                     /protein_id="HAM3417541.1"
                     /translation="MGSAFSAILSPAVGILISPFPIVGLILILLSNKARINSIFYTVG
                     WIVGNIAIFFIGLFLMSSAVSSSGDQSTLVKVVLIVLGALLILLGAHDFTKRPKNGEQ
                     AATPKWFEKMSNIKPGGAMMFAFVLSAVNPKNMLLSLTAGVSVGALNLSGGQETTATI
                     IFGIIACCSIYIPTIAFLLAGSKLNNALDSTRKWLIQNNSVIMAVLFLFIGLSVISKA
                     F"
     gene            2626..3018
                     /locus_tag="IBJ56_001284"
     CDS             2626..3018
                     /locus_tag="IBJ56_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HAM3417542.1"
                     /translation="MLDKLLGKAAVVTESSYGIERFLGEDETIIQIFKFVRDEVIITS
                     KGIFNVDAQGITGKKVEYKFFPKKALKYVSIETAGTLDRDFDLKIGVDGNTVVTQNTS
                     FSAPISLKVHKNDTETGFALYKMIKEML"
     gene            complement(3053..3826)
                     /locus_tag="IBJ56_001285"
     CDS             complement(3053..3826)
                     /locus_tag="IBJ56_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HAM3417543.1"
                     /translation="MFSVTTFNIRFDDTSERKKSWELRKILTKSLLDKYQWDFMGVEE
                     PLLPQMRDMKEMQDWDYFGVGRDDGFEKGEFTAVFYNSTRFTLLQEGHFWLSETPEVP
                     SIHSTAMFPRICVWGKLEDSTDGKQFYIFNTHLDHISEEARLFASQLLLHKASLIQED
                     LPVILLGDFNTEPSTPTYNLITQRYQDAQLLSKTPVKGPLGSFHDFQPLRPESELEKI
                     DYIFVSNEFHICSYETSTDEIDGCSASDHFPVMAVVGWT"
     gene            3984..4448
                     /locus_tag="IBJ56_001286"
     CDS             3984..4448
                     /locus_tag="IBJ56_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HAM3417544.1"
                     /translation="MRKSRWLLILLLLIVLVALLACVDSGNGDVSGVPAKRGKQHFPP
                     TDTKKGWIELLATDGISSQGDLPCVYEEAESVEKLEVHMKELSTVSLTYVYIDGYIVQ
                     MEQGGGELSFQIQLSKAELKRGIHELTAVQYQENNPDTNKVELLKRANYEVK"
     gene            4716..5618
                     /locus_tag="IBJ56_001287"
     CDS             4716..5618
                     /locus_tag="IBJ56_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3417545.1"
                     /translation="MGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITL
                     SLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLE
                     RTEQTEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRI
                     FSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYAN
                     LVLEKLKEASETSGSFNSAFYRIVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHY
                     EAIADLYSVVLKQFLEKENIQVED"
     gene            5782..6654
                     /locus_tag="IBJ56_001288"
     CDS             5782..6654
                     /locus_tag="IBJ56_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3417546.1"
                     /translation="MISYGELIRQIRQSKKISQKEVYTGVISKSYAIEFEKGTHAISS
                     LLLEKIVAKLMVSMEEFFLMYHQEELPEKEDFWETYARTCKTDEASAWESLYQKISLE
                     KGKVNQVKSAAIKLELDHIKGKQVADKKAVQILENYLIEAVFWTLQDIFLFTRMMHYL
                     PLKSRVPFYYKLLNTLDRYRHFERGRSILQSALASIMDDFIERNEIEHMELMIKSLEK
                     ISEDCDGTYFKILCMYYRGIVRWGEGEEREGGEEIEQAVAILRALGYENKAIEYETMY
                     RQFARENNDIKTME"
     gene            6856..10902
                     /locus_tag="IBJ56_001289"
     CDS             6856..10902
                     /locus_tag="IBJ56_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417547.1"
                     /translation="MLKKIFIALIALVVIINTVSFTAVSASTPTWLEQTMNSNEPFIK
                     EIEKETGKTRANITQTDLEAITALRVTGASDIPTNIDMLTHLTTLEVKNGTLSSVSNS
                     VGNLKELKILVLNDNNLSTFPMIAFQLPKLEELQVSGGTIEEIPATITNMASHLKFLG
                     ILNNHLVKVPDAIFTTNWTNATGGDLDLMAAGNQIVTNIPANYISQFNNGDNLLEFYD
                     NNYQKQDQLTTTPGYTIDVPVGTDFNQLTPDKTKLALTSGRTLLAQHEFEYYDDGSSS
                     LIHNGVAAAPGQATIFIKSKFSTQSNKFARTQVTVNITALNGGPITVKHEDTKGQELA
                     PPVILNGKDGDPYTTTQKTFPGYTLVATPANQNGTFTMNPATVNYVYSANDYKLTSTF
                     KDAQGQELKAPVVDTKDYHIQDNYTTTAATIPGYSLVATPANQNGTFGAGNVTVNYVY
                     KKDDYTLTSTYKDTNGQELKAPVVDATTYHYQDTYTTTAAVFPGYTLVATPTNATGTF
                     GSSNITVHYVYQANGYQLTSTFKDQQGKTIAPDDVDTKTYHVNDPYTTTAKTIPGYTL
                     VTTPTNNQGNFGTSDITVDYVYKAEDYTLTSTYKDAQGKELKQPVVDSKKYHIQDNYS
                     TSAATIPGYTLVSTPANETGTFHTSDITVNYVYKLTDLKLTSTYKDAQGTELKPPVVD
                     SKTYHIQDNYATTAAVIPGYTLVATPANQSGTFGSTDIQVNYVYQAVAYKLTSTYKDQ
                     QGNDLALPKVDSKTYHIQDGYTTSDIAIPGYTLVAAPTNQTGTFGASDVTVNYVYKAN
                     DYTLTSTYKDAQGKELKTPVIDSQKYHINDTYTTTGATIPGYTLVAAPANQSGTFGAA
                     NVTVNYVYKADDYTLTSTYKDANGKELKAPVVDSKTYHTKDNYSTSAATIPGYTLVAA
                     PTNQTGTFNTSNVTVNYVYKANEYTLTSTFKNVQGTELKPAIEKKGFIIKDGYATSGV
                     TIPGYTLVATPSNKKGTFGASNVTVNYVYKANGYALITTYKDTQGKDLKPLAIDTKTY
                     NINDPYTATALNISGYTLTTTPANEKGVFGASDETVNYVYKANDYTLTTTYKDANGKE
                     LQAPKVDAKTYHIQDTYKTTAAIIPGYTLVATPKNDQGTFGASNVTVNYVYQTNDYTL
                     TSTFKDAQGNELKAAEVDAQKYHIHDTYTSKAAVIPGYSLEKTPTNETGTFNASDIQV
                     NYVYKANDYQLTSTFKDQQGNEIALPTVDAKTYHIHDAYTTKAHLIPGYSLVAAPKNQ
                     IGAFGTSDVTVNYVYKKDAIIKPITPAKPTILTIKTPASKVVKTKVVKQTLPKTGDDD
                     AGLLNLLRLIGLVLILGVFLAVGSKKLR"
     gene            11040..11720
                     /locus_tag="IBJ56_001290"
     CDS             11040..11720
                     /locus_tag="IBJ56_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417548.1"
                     /translation="MLEKKYQIHLQNHYDATSRQVQKKEIKVLKKHNNLLNGEVFPYQ
                     ICLESTMEYSRFMLWFEKEVQKIVKELWNQHFIIKLTLSQLHFRETILFLEHLKDFSK
                     RITIEFIGEDTPEIKKHFSVQEQEAFFIGKLRMLKKWKFIISKHIEGCSVEQTLAFTP
                     CLHEIKYTMSQQARMEENIIDLHMFIDFWEYWATHKKLKFVVEVKEKDFITKSLMHKK
                     VHVQFENA"
     gene            complement(11875..13731)
                     /locus_tag="IBJ56_001291"
     CDS             complement(11875..13731)
                     /locus_tag="IBJ56_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HAM3417549.1"
                     /translation="MKLSKFFTIIALSATVTSSLPIPMVKAESTTANETKIENQLPKT
                     DLKETPKEKTTNNNLKNQLVQAGTKTYNDYFPDDNLAKAVAEKMNKNVDESVTVEELA
                     KITKLDARSQGIEDSTGIEYLTGLEILYLEDNQLKSIDVSKNLNLKDLACSNNPLANL
                     DVSKNLALEELTCENNELTQLDVSKNTALEYLYCPRNQLTKLDVSKNSALRYLACDVN
                     QLTSLDVSQNPALTNLGCTKNQLTDLDVSQNPNLSTLVCSDNQLTNLDVSQNQALAYL
                     TCDNNGLKNIDIDQNLALIELSCENNQLTNLDTTQNLALEILYCDDNQLTNLDVRKNV
                     NLLILSCNNNQLTNLAVGETILDVSCNNNQLKDISSLPDYLTAENGEYQAMDQTLVGP
                     IQTTQNNTLVYAVPTDLLDKDGNIVSIIKPENGGVYDAATRTITWENLPDSGEVSYTF
                     ESNDYGVFSGRVTVPYTGKETVSISSDDEISYKEGTTKTEEAFLTDIHASVTPATETI
                     TSNFADVVDLQTPGKYVVKLSVAESDITKDVIVYVTEEPSKDNPVAPVPPKDPDNKVA
                     DNDQNTEKPQVKVDEKTLPKTGDITSLSLSLAGIICLSFGILFFIKRKKKTV"
BASE COUNT         4656 a         2302 c         2736 g         4297 t
ORIGIN      
        1 tttatagtta aaatatagca aaaataagga agatagtcaa cgaaaacaaa taacaccgac
       61 tctattttga gccggtgttt tgactatttt ttacgtctaa aaagggcaag ggaagcgagc
      121 ataagtgtac cgaataaaat gctagatgtg gtttcagtgt cccctgtttt aggaattggc
      181 aaagtagttg tttttgttac gctggatttt gcttgttttg ttgcttgttt tgttgctgtt
      241 tttgttgctt gactagtaat ttgaatcggg ttgtttacta tttttgaatc ggcggatttt
      301 tctggttcat tttcgctaga atcagattct actaccgttg attctggatt ttctggagtg
      361 gtgatttctg gtttttcagg tgttgctgga tctgttggtg tagatggttc gtcaggtgtt
      421 ggggttgctg gatctgttgg tgtagatggt tcgtcaggtg ttggagttgc tggatctact
      481 ggtgtgactg gctcttctgg gttatcagtt tctggatcgt tttttggtgg tgttacaggt
      541 ttggaacgtt cgtctagttc tgtttgagct tttacaatgt tggcctgaag cgtatctttt
      601 aactcggaag caggaagaac atcgacaagc gtttgagctt ggtcaatcaa gtcttgcgta
      661 gtttcagctt taatcgagtt tgctggatta tcctctagga aaagttggtt gacagcttgt
      721 atggctgcct gttcttgtgc tatgcgcgca tccagttgtt gttgagcatt attaagttgt
      781 tcttggaaag tttctttttc tgaactagtt acagtattaa tttgttcctg cacagcgtta
      841 atagcgtttt gatctgttgc agctaaaata gttcctgttg gatcattatt tagaaacagc
      901 tcattaatgg ctgtttggat atagttgtag ttgatggtta ctgttttgat taaatcgcta
      961 ttagtttctg tcattgaacg aaccatggcc cctttctcta aaattacatt gccactagct
     1021 tcgtagccaa gaggatcata ataagtgaaa tcggataaat caacagcgta ggtaccagct
     1081 gcattggtag tgccaaagaa tgttccagtg agcctgcctt ctggggtata aattgctatg
     1141 gcaaaagatg ataatgctgt ggtttttcca gtgattttcg tgtcaccaac atggggcgca
     1201 tctaaagggc taatataaat agttgaggca ttatgtgttt cttcatatgc ggatgccatc
     1261 gcaggtaagg cagtaataga agtagttaaa agggagacag taaataatac agttgctaag
     1321 ttcttaaaat atttattcat taagtggtct ttcctccaat agaaataatc ttgtgagctt
     1381 agcatactat tatcaggatg ctaaaaatag tagtgaaatg agttgtattt ccggtttgtg
     1441 aagtgaaatt atgtctaatt cgccacattt ggctaataac tacattgtat cccttagaat
     1501 aaagtctttt tttagtcaag cgctccgata aaagcatttt tgttcttctg agaaaaagat
     1561 ataccgacaa ttgtttgtta gccgggatta gagggaacta ggtaaaagga atggtctaat
     1621 gaagatgatt ttttcattag taaagatata tacagaggag gagtcagcgt gggatcagcg
     1681 ttttcagcta ttttgtcacc ggcagtgggg attttgatta gcccatttcc aattgtagga
     1741 cttattttga ttttacttag caacaaggct cggattaaca gtatttttta tacggtaggt
     1801 tggattgttg ggaatatagc tattttcttt attgggttat tcttaatgag ttcagcggtt
     1861 agttcgtccg gagatcagtc aaccttggtc aaagtggtac ttattgtgct gggggcttta
     1921 cttatacttc taggcgcaca tgactttaca aaacgtccta aaaacgggga gcaggctgca
     1981 acaccaaaat ggtttgaaaa aatgagcaat attaaaccgg gaggcgcgat gatgtttgcg
     2041 tttgtgcttt cagcagtgaa tccaaaaaat atgttgcttt cacttacagc gggagtgagc
     2101 gttggggcgc tgaatttatc tggtgggcaa gaaacaacgg caacgattat ttttggcatt
     2161 atcgcttgtt gttcgattta tattcctacc attgcttttt tattagctgg gagcaaactt
     2221 aacaacgcat tggatagcac gcgtaaatgg cttatccaaa acaattcagt gattatggcg
     2281 gttcttttct tatttattgg tttgagtgtt attagtaagg cgttttaaaa ataaagctgt
     2341 tttttcctgg aacataggag aaagacagct ttattttttt aataaattaa aagaaatctg
     2401 ttctattttt gataatactt tctaaataat tagttgttcg aaaatgacac tagactaaag
     2461 ccgaactagc gaatataata agattatatt catcctctaa ctattaaaat tttactcact
     2521 gggaagaaat taagcggggg agttattttt ttctaatgtt atagactttt gattgaaaga
     2581 ggctttttgt agaataaaat aatgtaaata aaaaggatgg gttaaatgtt agacaagttg
     2641 ttgggaaaag ctgccgtagt taccgaatct tcttatggca ttgagagatt tttaggagaa
     2701 gatgaaacaa ttattcagat ttttaagttt gtaagagatg aagttattat tacttctaaa
     2761 gggattttta atgtggatgc tcaaggaata actggaaaga aagtagaata taagtttttc
     2821 ccgaagaaag cattaaaata tgtttctatt gagacagctg gaactttgga ccgtgatttt
     2881 gacttaaaaa ttggcgttga cggcaataca gtcgtgacac aaaatacatc tttctctgca
     2941 ccaatttcct taaaagtaca taaaaatgat acggaaacgg gctttgcgct ttataaaatg
     3001 attaaagaaa tgttatgagt agaagagaag acgaatatcg tcttctcttt ttttatgtcc
     3061 atcctactac tgccatcaca ggaaaatgat cagaagcaga acagccgtct atttcgtctg
     3121 tgctagtttc gtaagagcag atgtggaact cattagacac aaagatgtaa tcaatttttt
     3181 ctagctcgct ttcaggtcgg agtggttgaa aatcatgaaa actaccaagg ggtcctttaa
     3241 caggagtttt agaaagtaac tgcgcatcct gatatctttg agttattaag ttgtacgtcg
     3301 gtgtactagg ctctgtattg aaatctccaa gtaaaattac cggtaaatct tcttgaatca
     3361 agctcgcttt atgtagtaaa agttggcttg cgaatagccg agcttcttca gagatatgat
     3421 ctaaatgtgt attgaaaata taaaattgct ttccatccgt tgaatcttct agttttcccc
     3481 aaacgcaaat tcgtggaaac atggctgttg agtgaatgga aggaacctca ggcgtttcgg
     3541 aaagccaaaa atgcccttct tgcaacaagg tgaaacgagt agaattataa aaaacagcag
     3601 taaattctcc tttttcaaaa ccatcatctc gtcctacacc aaaataatcc caatcttgca
     3661 tttctttcat gtcgcgcatt tgtggcagaa ggggttcctc cactcccatg aaatcccatt
     3721 gatatttatc aagtaatgat tttgttagta ttttacgcaa ttcccagctc tttttccgct
     3781 cagaggtatc atcaaaacga atgttaaaag tagttacact gaacattttt ccacatcctt
     3841 cttttcattg gaatgtttta caaagagagt ttagcatatt tatgaaaacg tttcactgat
     3901 ttgggtttta tgtagtatat attctacatt ttttctggaa aaataaaacc attgtattgt
     3961 tgtaaaaagg gagtgtcact atgttgcgaa aaagtcgatg gttgctcata ttattactat
     4021 tgatagtatt agtggcatta ttagcatgcg tggacagcgg gaatggagat gtttccggtg
     4081 tgccggctaa aaggggaaaa cagcatttcc ctccaactga tacgaaaaaa ggatggatag
     4141 aacttcttgc cacggatgga atttcaagtc aaggtgatct gccttgtgtt tatgaagagg
     4201 cggaatctgt agaaaaattg gaagttcata tgaaagaatt aagtacggtg agtttgacct
     4261 atgtttatat tgatggctac atcgtccaaa tggaacaagg tggcggcgaa ctttcctttc
     4321 aaattcaatt aagtaaagca gaattaaaaa gaggaattca cgaattaacg gccgtgcaat
     4381 atcaagaaaa taatcctgat acaaacaaag tggagctttt aaaacgtgct aattatgaag
     4441 tgaaataaaa aagactaata aacaattcat aaccatattt ttaaagagaa tgtgaaaaat
     4501 gacattcttt ttttgtgcta ttaatactta caaaagaaag atgacgatat tgtaagtagc
     4561 ttttcgcttt taaaagaatt aaaatactag tgtttagggt atatatttta agaacaatga
     4621 ttcctaaatt gtttggagta gagaaattaa agcatagaca tagatactgc attccgactt
     4681 tttgaaatgg aagaacttaa ttagggggat atcatatggg ttcatatggc gaattgattc
     4741 gggaaatacg gctatctaaa ggtttgactc aaaaagaggt atacacagga attatatcta
     4801 ggtcttatgc aatcggattt gaaaaaggaa aacacgagat tactttgagt ttgtttgaag
     4861 aaattttaaa gcggatcatg gttcctttag atgaattctt ttttatttac agagactttt
     4921 cttcgacaga ggatgatagt ttttggattg atttcgtcga gctatcaggt aaaaatgatg
     4981 ttgtagggat gcaggcgttg ctagataaaa taactttaga gcgaacggag cagacagaag
     5041 ttagaaaagc gatacttcat acgagaattc aaacgattaa tcattatttg cgtacgaatg
     5101 tgtttgatga atcgaatatt tctgatgaat ataaaaaaat tattcatgac tatctttgga
     5161 aaatgcagac gtggacttta gaagaggttc gtattttttc caacggcata tcattttttg
     5221 aggaagaagt acaaattcac ttttatcaaa ttatgttgaa atcgtatgaa aagtataggt
     5281 actatgatag aggaagactg ctattttgcc atctatttgc taatctgaca gatgaactca
     5341 tcatacagaa taaaatcaat tatgcgaatc tagtactcga aaaattaaaa gaagcatctg
     5401 aaacaagtgg tagttttaac agtgcttttt atcgaatagt agccaattat tatcaagggg
     5461 ctatttggat gaaagaaggc gaagtggaaa agggctatcg ccaagccaaa agagccattc
     5521 aaacatggaa agaactgcat tatgaagcaa tagcagattt gtatagcgtg gtattaaaac
     5581 aatttttaga aaaagaaaat atccaagtag aagattaact atccgaagaa tttctattta
     5641 aaaaacacta aaatggagtc gttttagtgt ttttttgttt gtggtaaaga tgttttatgt
     5701 actatatata gcactattta cagagagaaa agaaaggaat gtaaaataaa ggcaagaatt
     5761 gagctaagag gaggtcttcg gatgataagt tatggtgagc tgattcggca aataagacag
     5821 tctaaaaaaa tctcccaaaa agaagtgtac acaggggtta ttagtaaatc ttatgcaatt
     5881 gaatttgaaa aggggacaca tgcaatatca agcctattac tcgagaaaat tgtcgctaag
     5941 ttaatggtga gtatggagga atttttctta atgtatcatc aagaggagtt gccggagaag
     6001 gaagattttt gggaaactta cgcgcggaca tgtaaaacgg atgaagcaag cgcttgggaa
     6061 tccctttacc aaaaaatatc attagaaaaa ggaaaagtta atcaagtgaa aagcgcggcg
     6121 ataaaactgg agttagatca tataaaaggc aaacaagtgg cggacaaaaa agcggttcaa
     6181 attttggaaa attatttgat tgaagcggtt ttttggacat tgcaggatat ctttttattt
     6241 acgcggatga tgcactattt gccactgaaa agccgagtac cgttctatta taaattgtta
     6301 aacacgctgg atagataccg ccattttgaa cgaggaagaa gcattttaca atcggcgctg
     6361 gctagtatca tggatgattt tatagagaga aatgaaatag agcatatgga gctaatgata
     6421 aaaagcttag aaaaaattag tgaggactgt gatggtactt atttcaaaat tctttgtatg
     6481 tattatcgtg gaattgtgcg gtggggagaa ggtgaagagc gcgagggtgg cgaagaaatc
     6541 gagcaggcag tagctatttt gcgagcatta ggttatgaaa ataaagcgat agagtatgaa
     6601 accatgtacc ggcaatttgc gagggaaaac aacgatataa aaacgatgga atgaaagcta
     6661 aaaaggacta ttctttttgg ttttcttttt ttgagtagta tatatgcgac attagaaaat
     6721 tttaagactc cgcatagtat tatatagact gaagtacggc ttaaagccat attgacagtg
     6781 aagggagggg ctttggcaaa ggaataaatt gccaactgac actgcaaatt tagcgttaaa
     6841 aggaggaaga ttgttatttt aaagaaaata tttattgcat taattgcgct tgtagttatt
     6901 atcaatacag ttagttttac ggctgtctct gcaagcacac ctacatggtt agaacaaacc
     6961 atgaatagta atgaaccgtt tataaaagag attgaaaaag aaactggtaa gacgagagcg
     7021 aatattacac agacagattt agaagctata actgccttgc gagtaacagg ggcaagtgat
     7081 attccgacta atatcgatat gttaactcat ttaactacgt tagaagttaa gaatggaaca
     7141 ttatcttccg tatctaactc agtggggaat ttaaaggagt taaaaatctt agttctgaat
     7201 gataataatt taagcacctt tccaatgatt gctttccaac tacctaagtt agaagaatta
     7261 caagtttctg ggggaacaat agaagaaatc cctgccacaa taacaaatat ggcgagtcat
     7321 ttgaaattct tagggatatt aaataaccat ttagtgaagg ttccagacgc aattttcact
     7381 acgaactgga caaatgctac tgggggagac ttagacttaa tggctgcagg gaaccagatt
     7441 gtaaccaata ttcctgctaa ctatataagc cagtttaata atggggataa cctattagaa
     7501 ttttacgata acaactatca aaaacaagac caactaacta caacacctgg atataccatt
     7561 gatgtacctg ttggaactga ttttaatcaa ttaacaccag acaaaacgaa actcgcacta
     7621 acatctggac gaactttact cgcgcaacac gaattcgagt attatgatga tggttcaagt
     7681 tcactaatcc acaatggcgt agcagcagca ccgggtcaag cgaccatttt catcaagagc
     7741 aagttttcca cgcaatcgaa caaatttgcc agaacacaag ttacagtaaa catcactgcg
     7801 ctaaacggcg gacctattac agtgaaacat gaagatacaa aaggacaaga acttgcgcca
     7861 cctgtcattt taaatggtaa agacggggac ccttatacaa cgacacaaaa aactttccca
     7921 ggctatactt tagttgcaac accagccaat caaaatggta cattcaccat gaacccggct
     7981 acagtcaact atgtatacag cgcaaatgat tataaactaa catctacttt caaagatgcc
     8041 caaggtcaag aactgaaagc gccagttgtg gatacaaaag attaccatat ccaagacaac
     8101 tatactacaa cagcagcaac cattccgggc tattctttag ttgcaacacc tgctaatcag
     8161 aacggaactt ttggagctgg gaatgtcacg gttaattatg tatacaaaaa agacgattat
     8221 acgctcactt ccacttacaa agatacgaac ggtcaagaac taaaagcacc agtggtagat
     8281 gcgacaacgt atcattatca agacacgtat acaacaacag ccgcagtttt cccaggttat
     8341 acgttagtag caacaccaac caacgctact gggacatttg gttcgtcaaa catcactgtt
     8401 cattacgtat atcaagcaaa tggctatcaa ttaacttcta catttaaaga tcaacaaggg
     8461 aagacaatcg caccagatga tgtcgatact aaaacctatc acgtgaacga tccctataca
     8521 acaactgcca aaacgatccc aggctacaca ttagtgacga cccctacaaa caaccaaggt
     8581 aattttggaa caagcgatat tacggttgat tacgtttata aagcagaaga ttatacatta
     8641 acttcgacgt acaaagatgc gcaaggtaaa gaattaaaac aacccgttgt agatagtaaa
     8701 aaatatcata ttcaagacaa ctattctaca agtgcagcaa ccattccggg ttatacgcta
     8761 gtatcgacac ctgcgaacga aacaggaacc ttccatacga gcgatatcac ggttaattat
     8821 gtgtataaat taacagactt aaaattaact tcgacatata aagatgcgca aggaacggag
     8881 ttaaaaccgc ccgttgtaga tagcaaaacg tatcatattc aagataacta tgctacaact
     8941 gcagctgtca ttcctggcta tacattagtc gcaacaccag cgaaccaatc aggtactttt
     9001 ggtagcacgg atatccaagt gaactatgtg tatcaagcag ttgcttataa actaacttcg
     9061 acgtacaaag atcaacaagg gaatgattta gctttaccaa aagtagattc gaaaacgtac
     9121 catattcagg atggttacac gacgagtgat attgctattc caggttatac attagtcgcg
     9181 gctccaacga atcaaacagg tacatttggc gcgagtgatg taaccgtgaa ttatgtctac
     9241 aaagccaatg actacacact aacttcaaca tataaagatg cgcaaggtaa ggaattaaaa
     9301 acgccagtca tagacagtca aaaatatcac attaacgaca cttatactac gacaggagct
     9361 actattccag gttatacatt agtcgcagca ccagcgaatc aatcaggtac atttggcgcg
     9421 gcgaatgtaa cagtcaacta tgtatacaaa gcagatgatt acacattaac ttcgacctac
     9481 aaagatgcaa acggcaaaga attaaaagcg ccagttgtag acagcaaaac ttaccataca
     9541 aaagataact attctactag cgcagcaacc attccaggct acacattagt ggcagcacca
     9601 acaaatcaaa caggtacatt taatacgagc aatgtgacag tcaattatgt atacaaagcg
     9661 aatgaatata ccttaacttc cactttcaaa aatgtacaag gaacagaact aaaaccagct
     9721 atcgagaaaa aaggatttat tattaaggat ggctatgcga ctagcggcgt aacaattccg
     9781 ggctatacat tagtggcaac accatcgaac aaaaaaggaa catttggtgc tagtaatgta
     9841 acagttaatt atgtatataa agcgaatggt tatgcattaa tcacaacata taaagacaca
     9901 caaggtaaag acttaaaacc actagccatt gatacaaaaa catacaatat taacgaccca
     9961 tacactgcaa cggcgctaaa catttcaggt tacacattaa caactacacc agccaatgaa
    10021 aaaggtgtat ttggcgcaag tgatgaaaca gttaattacg tatataaagc aaatgattat
    10081 acgttaacaa ctacctacaa agacgcaaac ggcaaagaac tacaagcacc taaagtagac
    10141 gcgaaaactt atcatatcca agacacatac aaaacaactg cagcaatcat tccgggctat
    10201 acattagtgg caacacctaa gaatgaccaa ggtacttttg gagcgagcaa tgtaactgtg
    10261 aattacgtgt accaaacaaa tgattacacg ctaacttcga catttaaaga tgctcaagga
    10321 aacgaattaa aagcagcaga agtagacgca caaaaatacc atattcatga cacttacaca
    10381 tctaaagcag ccgtgattcc gggttacagt ttagaaaaaa caccaacgaa cgaaacgggt
    10441 acttttaatg caagtgatat tcaagtaaat tatgtgtata aagcaaatga ttatcaactt
    10501 acttctactt ttaaagatca acaaggcaac gaaatagcat taccaacagt tgatgcaaaa
    10561 acttatcaca ttcatgacgc ttatacaacg aaagctcact tgattccagg atatagccta
    10621 gtagctgcac caaagaacca aataggtgct tttggaacaa gtgacgtaac agtcaattat
    10681 gtgtataaaa aagatgctat tatcaaacct attactccag cgaaaccaac tattcttaca
    10741 ataaaaacac ctgcaagcaa agtagttaag actaaagtag ttaagcaaac tcttcctaaa
    10801 acaggggatg acgatgccgg actattaaac ctgctaagac ttataggact cgttttaatt
    10861 ttaggcgtat ttttggcagt cggaagtaaa aaattaagat aagtataacg tagattaaaa
    10921 caccgccgca gattgttgtg gtggtgtttt aactaatata tccgacatta gaaataccca
    10981 ttttggaaaa gatgtatgat atttattgta aagaatttca caaaggaaga ggcgattctt
    11041 tgttagagaa aaagtatcaa atccatttac aaaatcatta cgatgcaacg agtagacaag
    11101 tgcaaaagaa agaaataaaa gtcttaaaaa aacacaataa tttattaaat ggggaagttt
    11161 ttccatatca aatttgttta gaaagcacga tggaatattc aagatttatg ttgtggtttg
    11221 aaaaagaagt ccaaaaaatc gtgaaagaac tttggaatca acattttatt atcaaactaa
    11281 cattatccca attacatttc cgcgaaacca ttctcttttt agagcattta aaagatttta
    11341 gtaaacggat aacgattgaa tttatcggtg aagacacacc agaaattaaa aaacattttt
    11401 ctgtccaaga gcaagaagcg ttttttatag ggaaactaag aatgctaaaa aaatggaaat
    11461 tcattatttc taaacatatc gaaggctgct cagtggaaca aacccttgct tttaccccgt
    11521 gtctacatga aataaaatac acgatgagtc agcaagcacg aatggaagaa aatattatcg
    11581 atttgcacat gttcatcgat ttttgggaat attgggcaac acataaaaaa ttgaaattcg
    11641 tagtcgaggt gaaggagaaa gattttatta cgaagtcttt gatgcataaa aaggtccacg
    11701 tacaatttga gaatgcgtag cggaagaatt atagccgagc tctgtttatt ctatcactca
    11761 agaagcctga gggagctttt tgactgtatt tttttgccaa taagtaatct gaaaagtaga
    11821 tattgataga ataaaaaata gccttatcac ttatgataag gctattactc attattaaac
    11881 tgtttttttc tttcgtttga tgaaaaatag aataccaaag cttaagcaaa taattccagc
    11941 caatgacaaa cttaagctag taatatcacc tgtttttggc aacgtctttt cgtctacttt
    12001 tacttggggt ttttccgtat tttggtcatt gtctgctact ttgttatctg gatcttttgg
    12061 tggaacagga gcgacaggat tatctttact tggttcctct gtcacataca caatgacgtc
    12121 tttcgtaata tctgattctg ccacgcttag ttttacaaca tatttacctg gtgtttgtaa
    12181 gtctactacg tcagcaaaat tgctagtgat ggtttctgtt gctggagtta cgcttgcatg
    12241 gatatctgtg aggaaggctt cctctgtttt tgtagtgcct tctttgtaac taatctcatc
    12301 atcactagaa atgctgacag tttcttttcc tgtatatggc acagtaactc ttccagaaaa
    12361 cacaccatag tcattgcttt caaatgtgta actcacttct ccgctatctg gtaaattttc
    12421 ccacgtaata gttctagtag ctgcatcata aaccccacca ttttctggtt ttatgatgga
    12481 aacaatgtta ccatccttat ctaacaggtc tgtaggaaca gcgtatacaa gtgtattatt
    12541 ttgtgtcgtt tggattggac ctactaatgt ttgatccatt gcttggtact cgccattctc
    12601 agcagtaaga taatctggta aggaactaat atcttttagc tggttattat tacagcttac
    12661 atccaatatt gtctctccaa cagctagatt cgttagttga ttgttattac aagataaaat
    12721 taataaattt acgttttttc taacatctaa attcgttagc tgattgtcat cgcaatataa
    12781 aatctctaaa gctagatttt gggtagtatc taaattcgtt agttgattgt tttcacaaga
    12841 taactctatt aaagctagat tttgatcaat atctatattc ttcaacccat tgttatcaca
    12901 agtcaaatat gctagagctt gattttggct aacgtctaag ttggttaact ggttatcaga
    12961 acaaaccaaa gtgcttaaat tcggattttg gctaacatct aaatctgtaa gttggttttt
    13021 agtacaacca agatttgtta aagctggatt ttgactaaca tctaaactgg ttaactgatt
    13081 gacatcgcaa gccaaataac gtaaagcgga gtttttacta acatctagct ttgttaactg
    13141 atttctaggg caatacaaat actctaaagc tgtatttttg ctaacatcta gttgtgttaa
    13201 ttcattgttt tcacaagtca attcttctaa agcaagattt ttactaacat ctaaattcgc
    13261 taacgggttg ttagagcaag ccaagtcttt tagatttaga tttttactga catctatact
    13321 ttttagttga ttatcctcaa gataaagtat ctctaatcca gtcaaatatt cgattccagt
    13381 gctatcttct atgccttggc tccgtgcatc tagtttagtt attttagcta attcctcgac
    13441 agttacagat tcatccacgt ttttgttcat tttttctgct accgctttag ctaaattatc
    13501 atctggaaag taatcattat aagttttggt tcctgcttgg acaagttgat ttttcaggtt
    13561 gttattcgtt gttttttctt tcggtgtttc ttttaaatct gtttttggta attgattttc
    13621 gattttagtt tcatttgcgg ttgtgctctc tgcttttacc attggtatcg gtaggctact
    13681 tgtaacggtg gcacttaatg caattattgt aaaaaatttg gacagtttca tagttagttg
    13741 ctccttcagt tgctgttgtt tagtatagtc agcagtgttc aaacaaaata tatattagca
    13801 cgtgaagatg agattttata tagaaactac cagaagatac aaaatatcgg ctattttgtg
    13861 tcgaaaatgt tacgaattgc ggtcgattat aatattggaa caatacttaa gatattaaat
    13921 tccctaacaa tggctactac gcctttgttt cagctgtttt tattttaaaa actattctgt
    13981 gaatttgtct g
//
LOCUS       DABQVC010000062        13593 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.062,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000062 DABQVC010000000
VERSION     DABQVC010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13593
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.062"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(148..696)
                     /locus_tag="IBJ56_001292"
     CDS             complement(148..696)
                     /locus_tag="IBJ56_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HAM3417550.1"
                     /translation="MELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKAL
                     VKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLA
                     IQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETS
                     EQVNQVIASGAIAVTTSNKHLW"
     gene            complement(713..2524)
                     /gene="mutL"
                     /locus_tag="IBJ56_001293"
     CDS             complement(713..2524)
                     /gene="mutL"
                     /locus_tag="IBJ56_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HAM3417551.1"
                     /translation="MAKHIVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVI
                     DILVEEAGLNKITIIDNGSGIEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALP
                     SIASVSHLEMETSTGEAKGTTISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKY
                     LKSLPTELGNITDILNRLALAHPDISFRFSHNGKPLLQTNGNGDLRQVIAAIYGVSIA
                     KKSVPVKAESLDFKISGYAVLPEVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLL
                     PIGRFPIIVLQIEMDPIIVDVNVHPAKLEVRLSKEKELGQLISQMIKETFHKLQLIPD
                     GEISKKQKEDQKSEQIQMSFEENKPVKETPTLFSKPTIPEYVPSDEDAPREDDFILET
                     MPSYEPESQAEQEEHTKERIPKMYPIGQMHATYIFAQNENGLYIIDQHAAQERIKYEF
                     YREKIGEVSRELQELLVPIVLEFPADEYVRLEEQKAKLEEVGVFLENFGQNSFIIRAH
                     PTWFPKDQEEEMLREIIDEALSAPSISIHKLREDTAIMMSCKKSIKANHYLTTQDMEA
                     LLDTLREASDPFTCPHGRPVIIQYSTYELEKMFKRVM"
     gene            complement(2544..5126)
                     /gene="mutS"
                     /locus_tag="IBJ56_001294"
     CDS             complement(2544..5126)
                     /gene="mutS"
                     /locus_tag="IBJ56_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HAM3417552.1"
                     /translation="MTEYTPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQI
                     LEITLTGREGGTKEKIPMCGVPYHSASGYIDTLIEKGYKVAICEQVEDPKTTKGMVKR
                     EVVQLISPGTVMDERGLKAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASED
                     RLINELTTLSTRELIVSSSEKEVLSDVMKEQLGLTFSVHEEDTIPVENEKLVTRHMSL
                     SEKRAIGKLLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQ
                     GTLLWLLDNTQTAMGGRMLKQWIDRPLIDRKKIIDRQNDVSELMAHFFERLELVENLK
                     NVYDLERLAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELANQLDPCE
                     ELTEKLEEAIMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTG
                     IKTMKVGFNRVFGYYIEVTRANTHLLPEGRYERKQTLTNAERYITPELKEKEKLILDA
                     EEKSMELEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSE
                     DGSLHVKQGRHPVVEKVMGAQSYVANDCDLDENREILLITGPNMSGKSTYMRQVALTA
                     ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSL
                     ILFDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHV
                     SAVEENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIII
                     ASVKQPEEVHEEVQLSMFPVEPEKKVSSKETKLLKEIASMNIMQMTPMDAMNKLYELQ
                     SKIH"
     gene            complement(5237..5599)
                     /locus_tag="IBJ56_001295"
     CDS             complement(5237..5599)
                     /locus_tag="IBJ56_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417553.1"
                     /translation="MTVSKDEIMKKATELRDALQQTEEVSFYRLAEERINANSKVAAK
                     VSKIKLLQKEAVNLEHYQKLEAMKQTENQIDNVRADIDSLPIVTEFRRAQEDANDLLQ
                     SITTEITTKVTTELEKEN"
     gene            complement(5616..6419)
                     /locus_tag="IBJ56_001296"
     CDS             complement(5616..6419)
                     /locus_tag="IBJ56_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HAM3417554.1"
                     /translation="MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASG
                     RGITEKIYKDFLELGANAVTLGNHTWDNRDIFEFIDDAKYLVRPANFPDDTTPGTGMV
                     FVKSNQHEIAVINMQGRTFLADLDDPFRKMDTLIEEAKKRTNIIFVDFHAETTSEKEA
                     MGWYLDGRVTAVVGTHTHVQTSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRF
                     KTALPTRFEVPKTGRAVLSGCLITLDENTGKAQKIDRILINEDHPFSFD"
     gene            complement(6425..6922)
                     /locus_tag="IBJ56_001297"
     CDS             complement(6425..6922)
                     /locus_tag="IBJ56_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAM3417555.1"
                     /translation="MSEWKILPMIEEHYPGVAAVHQEGIETGNATFQEKTLSIEAFDE
                     KYLNTCRLVVLMNGKVIGWAALLPFSSMHAYRGVAELSIYIAKSARGKGVGKALMHEI
                     IQTSEQNGFWTLQSLIFPENKASIALHHTYGFQTLCVHEKLGEMNGVFRNVALLERRS
                     NRNGE"
     gene            complement(7037..8599)
                     /gene="rny"
                     /locus_tag="IBJ56_001298"
     CDS             complement(7037..8599)
                     /gene="rny"
                     /locus_tag="IBJ56_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HAM3417556.1"
                     /translation="MTIAITIISSLLFLIVGLVVGSLIFKSSTEKKLAAARGTAELIV
                     EDAKKEAETTKKEALLEAKEENHRLRTEIENELRGRRTETQKAENRLLQREENLDRKD
                     TSLSKREATLERKEESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL
                     NQVEEELTHDTAIMVKESENRAKEESDKKAKNILSLAIQRCAADHVAETTVSVVTLPN
                     DEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREIARIALEKLVQD
                     GRIHPARIEEMVDKARKEVDEHIREVGEQATFEVGIHSIHPDLIKILGRLRYRTSYGQ
                     NVLNHSLEVSKLAGILAGELGEDVTLAKRAGLLHDIGKAIDHEIEGSHVEIGVELATK
                     YKENDVVINSIASHHGDTEATSVIAVLVAAADALSAARPGARSETLENYIRRLEKLEE
                     ISESYDGVEKSYAIQAGREVRIIVEPDTIDDLSSYRLARDIRKRIEEELDYPGHIKVT
                     VIRETRAVEYAK"
     gene            complement(8900..9946)
                     /gene="recA"
                     /locus_tag="IBJ56_001299"
     CDS             complement(8900..9946)
                     /gene="recA"
                     /locus_tag="IBJ56_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HAM3417557.1"
                     /translation="MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLA
                     LDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYA
                     KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
                     HVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYST
                     VRLEVRRAEQLKQGTDVMGNKTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMA
                     AEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKRVREEYEIDGSNKEP
                     LDEGEETLSLLDDE"
     gene            complement(10219..11463)
                     /locus_tag="IBJ56_001300"
     CDS             complement(10219..11463)
                     /locus_tag="IBJ56_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HAM3417558.1"
                     /translation="MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVG
                     DNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQILAAHLQKQLVEDEYHMNKINE
                     YFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
                     FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNE
                     VVVRITATAKTKEEASRLVKETEEEILRREGTFLYGYGEVSLSELVTAMLLEKELTIS
                     AAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSPQVIKEKGVVSAECA
                     KEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDR
                     NHNRRRAVKQGFQLIKQFLDAN"
     gene            complement(11531..12109)
                     /gene="pgsA"
                     /locus_tag="IBJ56_001301"
     CDS             complement(11531..12109)
                     /gene="pgsA"
                     /locus_tag="IBJ56_001301"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HAM3417559.1"
                     /translation="MNLPNKLTVIRIFMIPIFVILCVVPFDWGSVTWLDSTIPVTSLV
                     ATIIFIVAALTDWFDGHLARKYNLITNFGKFADPMADKLLVAAAFIILVEMHIAPSWV
                     VILIISRELAVTGLRLLLVEGGEVLAAGQLGKIKTFTQMIAIPLMLLNNFPFAWTGIR
                     VDLVFLYVCAFFAVWSGIDYFYKNRGVFKGSM"
     gene            complement(12200..13129)
                     /locus_tag="IBJ56_001302"
     CDS             complement(12200..13129)
                     /locus_tag="IBJ56_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3417560.1"
                     /translation="MTELGDKLKQARREKGLSLDDLQQVTKIQKRYLVAIEEGNYAVM
                     PGKFYARAFIKQYAEAVGIDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQ
                     SVGNQANTRNRFFDILPKILIALFIVFILFIVWFFLLNKQDNSTEKVKTDTNNPTVKV
                     EDSTKSKDTSKDTEKKDTTTNKDKSTETKDKKEDTTKEVEVTKGETSGNATTYTVKNT
                     DKMTLSLSATGDSWIGVSDANGSTIQNETLSTQNPSAEIDLGDNKTVSIVIGNSPVTT
                     VKINGKQLELAPDLVKQVLTINLEASDTSSDAE"
     gene            complement(13180..>13593)
                     /locus_tag="IBJ56_001303"
     CDS             complement(13180..>13593)
                     /locus_tag="IBJ56_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3417561.1"
                     /translation="WNVHMYMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVA
                     YSTVKGAQIAFCRALSQEVGLSGITVNAVTPGVVETKMMDQFSDEEKEILRQEIPLNR
                     FAQPEEIAEIVAFLTSKKASYITGEVLRLNGGWLM"
BASE COUNT         3679 a         2837 c         2321 g         4756 t
ORIGIN      
        1 gtacagttta aaggtggcta ttttatatag aacagttaga aaccgcttaa aacgttgtct
       61 agcaatgttc cacgggtaaa tatagcgttt tcattgtttt tcataagaac agctaagtcg
      121 ttattgctac acgacttagc tgtttattta ccataaatgt ttattggatg ttgtaactgc
      181 gatggccccg ctagctatta cttgattgac ttgttcacta gtttcaatta atcctcctgc
      241 aattacaggg atatgaagct tttgagtcat cttttgtact tgctcaggaa taatacctgg
      301 taaaagttca atacaatcag gttggacttt ttgtatcaat gctacacctt tgttataggc
      361 gcttgaatca atcatgaaaa gacgttgtat ggctagcatt ttgtgctgtt tagctttcat
      421 aatggcattt cctctagtcg aaataatacc atcaggacaa atttctgtac ataaaaagtc
      481 tattgcgtag tcgtcatttt tcagtccatt gactaaatcg gcatgtaata aaactttttt
      541 cccgccggct tgtgcgtatt tgactaatgc ttttaattga gccacatgtg tttccagcat
      601 caccatatat gtcaaatcaa gctctaaaat tttttccata tctttttgat tatgtgcagc
      661 tgggatgatt gattgattgg aaaatggtaa ctccaaatta tttcctcctc ttttacatca
      721 cacgtttaaa cattttttct agttcatatg ttgagtattg gataatcacc ggacgtccat
      781 gaggacaagt gaatggatcg cttgcttctc tcagtgtatc gagtaatgct tccatgtctt
      841 gcgttgttaa atagtgattt gctttaattg attttttaca actcatcata atagctgtgt
      901 cttcccttaa tttatgaata cttatgcttg gagcggataa cgcttcatca ataatttccc
      961 gaagcatctc ctcttcttgg tctttcggga accaagttgg atgcgcacga atgataaaac
     1021 tattttgccc gaagttctct aggaaaacgc cgacctcttc taatttagct ttttgttctt
     1081 ctaaacgaac atactcatcc gctggaaatt caagcacaat aggaacaagt aattcttgca
     1141 actcgcgact aacttctcca attttctcac gataaaattc gtatttaatc cgttcctgtg
     1201 ctgcatgttg atcaatgata tataagccat tttcattttg cgcaaaaata taagttgcat
     1261 gcatttgacc aattggatac attttaggaa tacgttcttt cgtatgctct tcttgctccg
     1321 cttgagattc tggttcatag gacggcattg tttccaaaat aaaatcatct tctcgcggag
     1381 catcctcatc tgaagggaca tattccggga tagttggttt tgaaaaaaga gttggtgttt
     1441 cttttacggg tttattttct tcaaaagaca tttggatttg ttccgatttt tggtcttctt
     1501 tttgtttttt agaaatctct ccatctggaa ttagttgcaa tttgtggaaa gtctctttaa
     1561 tcatttgact aattagttgt cctaattctt tttctttact taagcggact tctaatttag
     1621 caggatgaac gtttacatct acaataattg ggtccatctc gatttggaga acgataatcg
     1681 ggaaacggcc aattggtaag agcgtgtgat atccttcttg aatagctttt actaatgcga
     1741 aatttttaat aaaacgaccg ttaatgatgg tcgaaatata attacggtta gagcggttca
     1801 cttctggtaa tacagcatat ccagaaattt taaaatcaag tgactctgct ttaactggta
     1861 ctgatttttt tgcaatcgaa acaccgtaaa ttgctgcaat tacttggcgt aaatccccat
     1921 tcccattggt ttgtaataaa ggttttccgt tgtgtgaaaa gcggaaactg atatctggat
     1981 gcgccaaagc taagcgattt agaatatcgg ttatgttacc aagctcggtt ggtaaacttt
     2041 tcaaatattt taggcgtgct ggcgtattaa agaacaactg ggatacttcg atttgtgttc
     2101 cttttctagc atgtccgctt ttttgttcga ttattttccc gccttctaaa gaaatggtcg
     2161 ttccttttgc ttcgccagtg gaagtttcca tctctaaatg ggacacagag gcaatacttg
     2221 gaagtgcctc accgcggaat cctagtgtat gcacacggaa taaatctgct tcgtttttga
     2281 ttttgcttgt ggcgtgacgt aaaaaagctg ttgcgacatc ttcttcttca atgccactac
     2341 cgttatcaat aatggtaatt ttatttaatc ccgcttcttc cactaaaata tctatgacgg
     2401 tgctccctgc atcaattgca ttttctacta attctttaac gactgaagca gggcgttcta
     2461 ctacttctcc ggcagcaatt ttattggata gagcatcggt taattcgaca atatgtttag
     2521 ccatttaaaa cccgcctttc tttttaatgg attttacttt gaagttcgta taatttattc
     2581 atcgcgtcca ttggtgtcat ctgcataatg ttcatggagg caatttcttt tagtagtttt
     2641 gtttctttag aagatacttt cttttctggc tccactggga acatcgacag ttgcacttct
     2701 tcgtgaactt cttctggctg cttcacgcta gcgataatga ttttcttatc gtcattttcc
     2761 agttgttcta aaatacggct cgctcgttca ataagtgatt ttggtaattc tgctagctca
     2821 gcgacatgaa taccataact tttgtctgct gggccttctt taattttatg aaggaaaact
     2881 actttgccat tttcttctac agcactaacg tgaatatttt gtaacccact cagttctttc
     2941 tccaaatcag ttaattcatg ataatgggtg gagaaaagtg ttttagcatg gacattttca
     3001 tggatatatt caatgattgc ttgagcaagc gccattccgt cgtaagtagc tgttccacga
     3061 ccaatttcat caaataaaat taaactatct ttcgttgcgt gaacaatggc atttctagct
     3121 tctaacattt ctaccataaa tgtactttga ccggcaatta gatcatctgc tgcgccaatt
     3181 ctcgtgaaaa tttggtcaaa aattggtaat atcgcttctt ctgcaggaac aaaacaacca
     3241 acttgcgcgc agattgctgt taaggctact tggcgcatat aagtgctttt acctgacata
     3301 ttaggaccag ttataagtaa aatttcccga ttttcatcta aatcacagtc atttgctaca
     3361 tagctctggg cacccattac tttttctaca acgggatgac gaccttgttt tacgtgcagg
     3421 gaaccgtctt cgcttaatgt cggacgaatg aaatggtttt tctcgctaat atccgcaaaa
     3481 ctttgcaggc aatcgatttc actaacagat ttggctaatt tttgcagacg ttctatgtag
     3541 tcttttacca tttctcgtac ttcagaaaat aattggtact ctaattccat gcttttttct
     3601 tctgcatcta aaatgagttt ttctttttct tttagttcag gcgtgatata acgttcggca
     3661 tttgttagtg tctgtttgcg ctcatagcgg ccttctggga gcagatgcgt gtttgcacgt
     3721 gtaacttcaa tataatagcc gaatactcga ttaaatccta ccttcatcgt tttaataccc
     3781 gttagttcac gttctttacg ttctaattct gcaatccacg tttttccatt gcggcttgca
     3841 tcgcggtacg tatctaactg gctattataa ccatctttaa taatcccgcc ttcccgaatg
     3901 gaaatcggtg cagaatccat gattgcttct tctaattttt cggttagttc ttcacatgga
     3961 tctaattggt tggcaagttc ggtgagactc tcgctactca ttgacaacag tgtcgcgcga
     4021 atacgaggga tctgatataa cgaattacgc aattgaatta agtctcgtgc attcacattg
     4081 ccgtatgcaa ctcgaccagc aaggcgttct aaatcgtaga cgtttttcaa gttttctact
     4141 aactctaggc gttcgaaaaa gtgtgccatt aattcgctaa catcattttg tcgatcaatg
     4201 attttttttc gatctattaa cggacgatca atccattgtt tgagcattct tccgcccata
     4261 gcagtttggg tattatctag aagccaaagt aacgtacctt gacgaccttt accacgaatc
     4321 gactctgcta attctaaatt acgtttggaa tagtagtcca tcttcatata attgctcgtt
     4381 tcgtaatgga cagcttgttg taaatgccct aaatcccgct tttgcgtttc ttttaaataa
     4441 tggagtaact taccaatggc acgtttttcg gataatgaca tgtggcgggt tactaatttc
     4501 tcgttttcga caggaatcgt atcttcttcg tgtacagaaa aagttaaacc tagttgctcc
     4561 ttcatgacat ctgaaagcac ttctttttcc gaggaagaaa caatcaattc tcttgttgaa
     4621 agtgtcgtta gttcattaat caaacgatct tcgctagctt caattacggt tgattttaat
     4681 tcacctgttg ataaatcaga ataagcaaag ccgtactctt tgccttcata gcaataaagg
     4741 gaggcgatat agttattttc ttttgctttt aagccgcgtt cgtccataac ggttcctggt
     4801 gaaattaact gcactacttc tcgctttacc atgcctttgg ttgttttagg atcctcgact
     4861 tgctcacata tcgcaacttt atagcctttt tcaattaatg tatcaatata gccgctcgct
     4921 gaatggtatg gaactccgca cattgggatt ttctcttttg tcccaccttc acgaccagtt
     4981 aatgtaattt ctaaaatttg agaagcgttc agtgcatcct caaaaaacat ttcataaaaa
     5041 tctcctaaac ggaaaaataa gaaagcatct tgatatttgt ctttgatttc caagtactgc
     5101 ttaatcattg gtgtatattc tgtcattatc tcatcatccc ttacttcttt ttcatcctct
     5161 cattatagca taaagtttca tttccctgcg accgcaaaag gaaaaaaact gccgatgttt
     5221 tggcagtttt aagtggttaa ttttcttttt caagctctgt agttactttt gtagtgattt
     5281 ctgttgtaat cgattgtaaa agatcgttgg cgtcttcttg agcgcgtctg aattctgtta
     5341 caatcggaag cgaatcaata tctgcgcgaa cgttatcaat ttggttttcg gtttgtttca
     5401 tcgcttcaag tttttgataa tgctctaaat ttactgcttc tttttgaagt aattttattt
     5461 tagaaacctt cgctgctact ttggagttcg cattgattct ttcctcggca aggcggtaaa
     5521 acgatacttc ttccgtttgt tgaagcgcat cacgaagttc ggtagctttt ttcatgattt
     5581 cgtcttttga aactgtcaca atttcatctc cattcttaat caaaggaaaa tgggtggtct
     5641 tcattgatga gaattcggtc aattttttgt gcttttccag tattttcgtc aagtgtgatt
     5701 aaacagcccg acaagactgc tcgaccagtt ttaggaactt cgaacctagt tggtaaagct
     5761 gttttaaatc gacggataac agcttccttt tccataccaa ggatagcatc gtatggacca
     5821 gtcataccag tatccgtcag ataggctgtt ccttctggaa gaatgcggtt atccgaagtt
     5881 tgcacatgag tatgcgtgcc aacaacagcc gtaacacgac catctaaata ccaacccatt
     5941 gcttcttttt cactagtagt ttctgcatga aaatccacaa aaataatatt agtgcgtttc
     6001 tttgcttctt ctatcaaagt gtccattttg cggaatggat cgtctaaatc tgctagaaaa
     6061 gtccgacctt gcatgttgat aacggcaatt tcatgctgat tgcttttcac aaaaaccatt
     6121 cccgtaccag gtgtagtatc atctggaaag tttgctgggc gcactaaata cttagcgtca
     6181 tcgataaatt caaaaatatc acgattatcc catgtatggt tcccaagtgt tacagcatta
     6241 gcaccaagct ccagaaaatc tttataaatt ttctctgtaa tcccacggcc acttgctgca
     6301 ttttcaccgt taatcaccgt gatagtaggt ttatattttt tctttaattg tggtaaatat
     6361 tctgttatgg catcgcggcc gatagaaccg acaacatcac cgataaatag tattttcatt
     6421 ttgtttattc tccgtttcta ttacttctac gttctaatag tgcaacattc cgaaaaacgc
     6481 cattcatttc gcctaatttt tcgtggacgc ataaagtttg gaatccatat gtatgatgaa
     6541 gcgcaatgct agctttattt tctggaaaaa tcaaagattg caatgtccaa aaaccattct
     6601 gctcgcttgt ctggataatt tcatgcataa gtgcttttcc aacgcctttt ccacgggcac
     6661 tttttgctat ataaatactt aattcagcta ctcctcgata agcatgcatg ctagaaaatg
     6721 gtaacagcgc tgcccagcca atcactttgc cgttcataag gacaaccaat cgacaagtgt
     6781 ttaagtactt ttcatcaaac gcttctatag atagtgtctt ctcttgaaaa gtagcgtttc
     6841 ctgtttcaat gccctcttga tggactgcag ctactcccgg atagtgctct tctatcatag
     6901 gcaaaatttt ccactcactc aaaaactccg cctccctttt tcgtttatcc attaattata
     6961 ccgttcttac tcgacctagg caaccgatta aaaaaagata caccgcaaaa taaatttgcg
     7021 atgtatcttt taattattat ttagcgtatt caactgctct tgtttcacga atgacagtca
     7081 ctttaatgtg accaggataa tctaattcct cttcaattcg ttttcttatg tcgcgagcaa
     7141 ggcggtaaga agaaagatca tcaattgtat ctggttcaac gatgatacgt acttcacgtc
     7201 ctgcttggat agcataagat ttttctacac catcgtaaga ctcagaaatt tcttctaatt
     7261 tttctaaacg acggatgtaa ttttcaagcg tttcactacg agctcccggt cttgcagcag
     7321 aaagtgcatc tgccgctgcg accaatactg cgataacaga agtagcttct gtatctccgt
     7381 gatgggaagc aatactattg attaccacat cattttcttt gtatttggta gcaagttcca
     7441 cgccgatttc aacatgactg ccttcaattt catggtcaat tgctttcccg atgtcatgaa
     7501 gtagtccggc ccgtttagca agcgtaacgt cttcgccaag ctctcctgca agaattcctg
     7561 caagttttga aacttcgagt gagtggttaa gaacgttttg tccgtaacta gtacggtaac
     7621 gcaagcggcc aagaattttt atcaaatcag gatggatgga atgaattcca acttcaaatg
     7681 ttgcttgttc cccgacttcg cgaatgtgtt cgtccacctc tttacgggct ttgtccacca
     7741 tttcttcaat tcgagctgga tggattcttc catcttgaac aagtttttct aaggcgattc
     7801 tagcgatttc acgtcgaatt ggatcaaatc cggaaagaat tactgcttcc ggtgtatcat
     7861 caattatcaa atcaatcccc gttaacgtct caagcgtgcg gatattacgg ccttcacgtc
     7921 cgataatccg acctttcatc tcatcatttg gtaaggtaac aacagatacc gttgtttctg
     7981 ccacatgatc agctgcacaa cgctggatag ctagtgagag aatattcttt gcttttttat
     8041 ccgactcttc cttggcccgg ttttctgatt ctttgaccat gattgctgta tcatgtgtta
     8101 attcctcttc tacctggtta aggatgatag atttcgcttc ctctttgctg agcgcagaaa
     8161 ttctttcgag ttctgtctgc tccgcttgaa tcatctcagc tagtttgctt tctttctctt
     8221 caatttgttg ttgacgttta ctgatactct cctcttttct ttcaagtgta gcttctcgtt
     8281 tacttaaaga agtatcttta cggtcgaggt tttcctccct ttgcaataag cgattttctg
     8341 ctttctgtgt ctctgttctt cgcccacgaa gttcattttc gatttcagta cgtaacctat
     8401 gattctcttc cttcgcttca agcaatgctt ctttttttgt agtttctgct tctttcttcg
     8461 catcctctac aattaattcc gcagtccccc ttgcagcagc cagttttttc tctgtactag
     8521 atttaaaaat tagagaacca acaactagac cgacgattaa gaaaagcaaa ctggagatga
     8581 tcgtgattgc gattgtcatc cttacacctc ctttgctatt caattttcgt tattgttatg
     8641 tcggtggcca gaattctggc acatgcgtat ttttcatcaa caaccgagtg ctaatctccc
     8701 cattcagttg aagccgattt tcaaaggaaa aaacttcccc cttgtctccc agcaatataa
     8761 aatatacaac ttaattttat aggtcaaagc atacaatgtc aagaaaagga atgaaatgta
     8821 cggttatttt ccttagtttt ttttaaatag taaaaaatac gtgacaggaa gtaaattcct
     8881 atcacgtatt tagtattatt tattcatcat ctagtaaact taatgtttct tcgccttcat
     8941 ctaaaggttc tttattgctt ccgtcgattt cgtactcttc acgaacacgt tttgaaatct
     9001 catcacgaat atctgtatgt tcttttagat attgttttgc gttttcacga ccttggccga
     9061 tacgttcttc tttgtaagaa taccatgaac cactcttatt gattacatcc acttcagcgg
     9121 ccatatcaac aagctcgcct tcacgtgaaa taccttcacc gtacatgata tccacttcag
     9181 caatacggaa tggaggagct actttgtttt ttacaacttt aatttttgtt ttgttaccca
     9241 ttacatctgt accttgctta agttgttctg cacgtcttac ttctaaacgt acagtcgaat
     9301 agaatttaag cgcacgacca ccaggtgtaa tctctgggtt accaaacata acaccaactt
     9361 tttcacgaat ttggttaatg aaaatagcaa tggtttttga tttattaata acaccggaaa
     9421 gtttacgcaa tgcttgggac attaaacgtg cttgtagccc aacgtgtgca tcacccatct
     9481 ccccttcgat ttcagcacgt ggtacaagtg ctgcaacgga gtcaattact agcatatcta
     9541 cagcaccact tctaactaat gcttctgcaa tttctaatgc ttgctctcct gtatcaggtt
     9601 gagatagtaa taattcatca atatttacac ctaggttttt agcataagct ggatctagtg
     9661 cgtgttctgc atcgataaat gcagctgttc cgccttgtgc ttgtacttcc gcaatagcat
     9721 gaagtgcaac agttgtttta ccggaactct ctggcccgta tacttcaata atacgtccac
     9781 gtggatatcc gccgactcct aaagcaatat ctaatgctaa tgagccacta gaaatagtag
     9841 atatattttg gtctgaatgt tcccctaatt tcataatgga acctttaccg aattgttttt
     9901 caatttgttt taaagcttgg tctaatgccg cttgacgatc attcacattg ttgcctcctt
     9961 caataaatat cctaatagct gtttttctac ttcttctctc tcaaaaaaca gtcagaatgt
    10021 tttcctaaaa ttactataac gcattttaga gcgagaagca agcaaaaagc gaacatttat
    10081 tcgtattttt tattttgtgt aagcaccggt tgctttcttc ctcattataa cgggattttc
    10141 agctttcgtc taacactttt ttattgctca tttccgtttt ttctgcagat ttttttcctt
    10201 ttcttctaaa aaaaaagact aatttgcgtc taaaaattgt ttaattaact gaaatccttg
    10261 ttttactgca cggcggcgat tatggtttcg atctcttcca tagacaaact gaaaagcctc
    10321 tgtttcataa cctttaacgc ttagtccaat ccaaatagtg ccagcaggat gaccttctaa
    10381 actatctgga cctgcaacac ctgtaaaact gattccaata tccgtcttac aaaggcggct
    10441 tacattttca gccatttcct tcgcacattc cgcactaaca acgccttttt cttttattac
    10501 ttggggagat acttgtaata tagattgttt tgtttcttca ctgtatgtca ccataccacc
    10561 tttgaaaatt ttcgaaatgc caggaaagcg ggcaatttct gcttggaaca aaccagcagt
    10621 gaaactttct gcggcagaga tggtaagttc tttttcaagt aacatcgccg taactaattc
    10681 agacaatgac acctctccat atccatataa aaaggtacct tctcggcgca atatttcttc
    10741 ctcggtttcc ttcacaagtc tgcttgcttc ttcttttgtt ttagctgtcg ctgtgatacg
    10801 gaccacaact tcattatcac cagcatatgt cgcaatcgtc gggttgactt gcgtgacaat
    10861 caaatcattt aaatcagcag ctaattgtga ctctccaatt ccaaaaaagc gcataatttt
    10921 ggattctaaa atgttttgat cgccactttc gcttaaaagc aatgggttag catagcttgt
    10981 aaacattggt ttcatttcag atggtggacc tggtagcaaa acgtaagtat gattgttttc
    11041 tcttaagtac attccagccg caaagccaaa atcattattt aatacgatgg aatcttcaat
    11101 aataaccgct tgtaatttat tattttcggt catagtccta ttcctagaag tgaaatactc
    11161 attaatttta ttcatatggt attcatcttc cactaattgc ttttgtagat gagcagccaa
    11221 gatttgtttt gtaatatcat cctcagtcgg tccaagtccg ccggtaaaga ttaaaatgtc
    11281 acttcggttt tcagcgattt cgattacttc ttttaaacgt gttgggttat ctccaactac
    11341 cgtatgatga tatacatata ttccgtcagc agctaattct tgtgaaataa acgcagcatt
    11401 agaattaaca atttgcccta gtaatagttc tgttcctact gcaatgattt ctgcacttgc
    11461 catcttgccc catctccaat tcgatttttt gtatagaaaa aagcacacaa tggtatgctt
    11521 ttttcattta ttacatagac cctttgaaaa caccacgatt tttgtagaaa taatcgatcc
    11581 ctgaccatac tgcaaagaat gcacatacat acaagaacac taaatccaca cgaatacctg
    11641 tccaagcaaa tggaaaatta tttaataaca taagcggaat agcaatcatt tgtgtgaatg
    11701 ttttaatttt accaagttga ccagctgcaa gtacttctcc gccttcaact aaaagtaagc
    11761 gaagaccagt aacagctagt tcacgactaa taataagaat aactacccaa gatggagcga
    11821 tatgcatttc tacaagaata ataaatgcag ctgctacaag tagtttatca gccatcggat
    11881 cagcaaattt accgaagtta gtaatcaaat tatacttgcg agctaaatgt ccatcaaacc
    11941 agtctgtaag agccgctaca atgaaaataa tagttgctac taaactagtt accggaatag
    12001 tggaatcaag ccaagtaacg cttccccagt cgaatggcac tacacaaaga atgacaaaaa
    12061 ttggtatcat aaaaattcgg ataaccgtca atttattagg taaattcatc tttttctctc
    12121 cttttttaca tttgaaaagt atgtaattat aaaaaatgtt ggcgaaatct aatgagtaga
    12181 tttcgccata taaaacaaat tattcagcat ctgagctagt atcacttgct tctaaattaa
    12241 ttgttaatac ttgtttaaca agatcaggtg caagttctag ctgtttacca ttgattttta
    12301 cagttgtaac aggagaattt ccgataacga tagaaaccgt cttgttatca cctaaatcaa
    12361 tttctgcaga aggattttgg gttgatagtg tttcgttttg gattgtacta ccattcgcat
    12421 cggaaacgcc tatccaagaa tcaccagtgg cgctaagtga cagagtcatt ttgtccgtat
    12481 ttttcactgt gtacgtagtg gcattaccag acgtctctcc tttagtcact tcaacttctt
    12541 tggttgtatc ttctttttta tcctttgttt ctgtagattt atctttgttt gttgtcgtat
    12601 cttttttctc agtgtcttta cttgtatcct tgctttttgt cgaatcttct acttttactg
    12661 taggattatt tgtatctgtt ttcacttttt ccgtggaatt gtcttgttta ttaagcaaga
    12721 aaaaccaaac aatgaaaaga ataaacacaa taaataaagc aataaggatt tttggtaaga
    12781 tatcaaaaaa acgattacga gtattcgctt gattacctac agattgtgca ggcatcggat
    12841 ttcttttact ttgtacccgt gttggctcat tatttactac ttcttgttgc ggtgtttccg
    12901 gaacttcgct ttcaaactcg tcgaaaagtg ttgcgctatc tatcccaact gcttctgcgt
    12961 attgtttaat aaatgccctt gcataaaatt tgccaggcat tacagcataa tttccttctt
    13021 caatcgctac caaataacgt ttttgaattt tcgttacttg ttgcaagtcg tctaaactga
    13081 gtcctttttc acgtctagct tgtttcagtt tatcaccgag ttctgtcaaa attaaacacc
    13141 taccattact aatttcaaat ttccattttt ttactaaaat tacataagcc aaccgccatt
    13201 taagcgcaaa acttctccag tgatatagct tgctttttta cttgtcaaaa atgctacaat
    13261 ttctgcaatt tcttctggtt gggcaaaacg atttaaaggg atttcttgac gaagaatttc
    13321 tttctcctcg tccgaaaact gatccatcat ttttgtttct acaacccctg gtgtaactgc
    13381 attaactgtt attccagaaa gtcccacctc ttgacttagc gcacggcaaa aggctatttg
    13441 tgcacctttt acagttgaat acgctacttc cattgatgca ccaacttctc cccatataga
    13501 actaatgaaa ataattcttc cttggctact tttcattaat ttgggcataa aagtgcgaat
    13561 taatcgcatt ggcatataca tatgcacatt cca
//
LOCUS       DABQVC010000063        13551 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.063,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000063 DABQVC010000000
VERSION     DABQVC010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13551
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.063"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..136
                     /locus_tag="IBJ56_001304"
     CDS             <1..136
                     /locus_tag="IBJ56_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1447 family protein"
                     /protein_id="HAM3417562.1"
                     /translation="EAESEVKVRQLLKDEPFHIEFVEKISDAHLAYEKENPDFALWEK
                     "
     gene            143..1810
                     /locus_tag="IBJ56_001305"
     CDS             143..1810
                     /locus_tag="IBJ56_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HAM3417563.1"
                     /translation="MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPE
                     DELLGIDYVIPDYSYLVKNKDKIKGLFITHGHEDHIGGVPYLLRDLNIPIYAGKLASA
                     LIRNKLEEHGLLRQTKIYEYEEDDVFKFRKTSISFFRTTHSIPDTYGIVVKTPSGNIV
                     HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNAEVPNFTMSERVVGESIKNI
                     FRDVEGRIIFATFASNIYRLQQVVESSIETGRKIAVFGRSMESAMEIGKQLGYIQAPK
                     DTFIDVHQLNKTPAGNVTILCTGSQGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPI
                     PGNTTSVNRTINLLYQAGAEVIHGKVNNIHTSGHGGQQEQKLMLRLMKPKFFMPIHGE
                     FRMQKIHAESAEECGVPEENSFIMANGDVLALTSETAHVAGKIHAASVYIDGSGIGDI
                     GNIVLRDRRILSEEGLVIVVVSIDMKNSRVMAGPDIISRGFIYMRESGNLIGEAQGLL
                     TRHLNKVMEQKTTQWSEIKNEITDTLQPFLYEKTKRRPMILPIIMEV"
     gene            1919..2884
                     /locus_tag="IBJ56_001306"
     CDS             1919..2884
                     /locus_tag="IBJ56_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytR family transcriptional regulator"
                     /protein_id="HAM3417564.1"
                     /translation="MTETRAEKKKKTTSTFTKVMKIASVALLGIIFFSITGLAAKYYI
                     TVQNTFSKINVPLESSNKTLSDLEKKKPFSVLLMGSDARPGEKNGRADTIILATANKQ
                     QNAVEMVSIPRDTKVDYGNGDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINM
                     EGFKDLVDAVGGITVYNDIDLTEVNSKFVKGNITLNGTEALQYVRIRHEDPRGDFGRQ
                     DRQRDVIIGIANKVISSSGVSNFESIMKAVGDNFQTNMTLTDITSMAANYSSVLKNVD
                     SQELKGEGEMIYSESYGFDLYYFAPDKTDLERIITMFKKSLDITE"
     gene            complement(2925..3776)
                     /locus_tag="IBJ56_001307"
     CDS             complement(2925..3776)
                     /locus_tag="IBJ56_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HAM3417565.1"
                     /translation="MKKISMRERFALDPRVIKVLISITIAVILFPIMGDWIVYPTYVF
                     NAIYITAQMSKGDTYKSSIERIIGTIVGGLLAAFVYLLVPNHHYIMIPIGAALAVMLS
                     YLFTKKFTMVIVVITVMVLVGKGDGEPIVFLRDRLFDTMIGLVIGFVVYALYPRKKNK
                     KLNQVFISQEKAVLERIKEIDINSEDAKSLAPKIKGLWKQLIDLRKTREQIITDSSFV
                     ASLTSDEPMLHFTHLVEQAINNIEILYHVTLEKESEPNYEVVFAYHQQACAKVITEMD
                     ALITKHK"
     gene            complement(3773..4693)
                     /locus_tag="IBJ56_001308"
     CDS             complement(3773..4693)
                     /locus_tag="IBJ56_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417566.1"
                     /translation="MKKFLLDKIGARGLIQMLQAFIYASICVVVHTVIFPDLAGVLPI
                     VVLIGIISMQPTYGITRKVIPQIALAFTLACIFVIISTYFFPINVYIYYVVMIVVILA
                     VNFLMPQKYMVMTLAIGTALYFLGTDDLPMPLYTMIIVALIDVFVFFLLVQLVVKYVH
                     LPLEKTVQTIMKQLVGLFDKEIESVFKNNGKFIAKPLYSIFVQSQMFIKEYSASKKAN
                     PRHVELYQALLPNYLQLFFHMQTMEDIGRVGLSEEAKQALAQINVKVSDEINAKEANP
                     VASFHVKKFVENFLAIKVGMKELVEGREQK"
     gene            complement(4849..5508)
                     /locus_tag="IBJ56_001309"
     CDS             complement(4849..5508)
                     /locus_tag="IBJ56_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HAM3417567.1"
                     /translation="MKEGFAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSI
                     ATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATN
                     DKHAKLLDKIGADRVVHPERDMGRRIAHYIVSKNMLDYLELSDEYSLVEISVSDPRFL
                     GKSLVDLDFRNSFGVNIVGIKKDKQMIITPEANDVLHEGDILIVIGSDDDIERLQEKI
                     Q"
     gene            complement(5527..6165)
                     /locus_tag="IBJ56_001310"
     CDS             complement(5527..6165)
                     /locus_tag="IBJ56_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3417568.1"
                     /translation="MIKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAENGREGADMAL
                     ELRPDIILMDLVMDEMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYM
                     LKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRENEILLLI
                     AEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLVEKK"
     gene            complement(6162..7220)
                     /locus_tag="IBJ56_001311"
     CDS             complement(6162..7220)
                     /locus_tag="IBJ56_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HAM3417569.1"
                     /translation="MSFSKLMMAVCSGLLLVATAIGTVGYYFFSEGSWYKILIEQKIF
                     YIPFVVFVPLTAISIGLIIGGLLGYFVKQKFESIDFSIRLLGQGDLEKKITSEEDENF
                     LEVQQVYKQIDRLRDKMKAQTILTQKLASDRAESTGQTKEAILSEERHRIARELHDSV
                     SQQLFAAMMLLSALNEQSEKSATPAMQKQLKMVESIVNESQSEMRALLLHLRPTQLEG
                     KSLKTGIEQLLKELTTKLPIEVEWQIEDISLQKGIEDHLFRIVQELLSNTLRHSKAKL
                     LEVRLVTMDNLAVMKVVDDGVGFDMDNVRQGSYGLQNMRERVAEFGGTIKIISFPGRG
                     TSVEIKIPLVAKKDVESE"
     gene            complement(7217..7930)
                     /locus_tag="IBJ56_001312"
     CDS             complement(7217..7930)
                     /locus_tag="IBJ56_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-active antibiotics response protein"
                     /protein_id="HAM3417570.1"
                     /translation="MKKMESSVVFVFLIAIIVGVGLEMLFQWELLILFALGIFFIFTS
                     RKASATKKSARNSLFIGIVFIIIAVLLTTTFKVGLVVAGIYAIIHYISRKRAPQLLML
                     KTREPDSKIDRTDKFIRNQWFGNQRILDVVYEWDDINIQTGIGDTILDLGNTVLPTGE
                     SVIMIRSVSGKIRILVPFDIGICIEHSAIFGNIQYDKESTSIQNNSIKVYSDNYESSA
                     RKVKIMTSVIFGDLEVIRL"
     gene            complement(8065..8937)
                     /locus_tag="IBJ56_001313"
     CDS             complement(8065..8937)
                     /locus_tag="IBJ56_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HAM3417571.1"
                     /translation="MNNYIGKSQIMTVKEIKDTGWLLEKDGVTVFLSKSNTHETELAV
                     GAEVTVFIFVDYDREIAATTIIPKIQVGHYGWGTVTEVRKHLGVFVDIGIEKDVVVSL
                     DDLPALPHLWPKKEDRVMIALRVDEENRVWGVLAEEEQFRAIAVRAEQDLFNHNVEGT
                     IYRLLKVGSFVFTDDFHIGFIHESERTSEPRMGERVKARVIAVKPDGSLNLSLRGRAH
                     EVLNDDAEMILTYLRSVGGEMPFGDKSDPDAIRAKFGISKAQFKRAIGTLLKARRITQ
                     ENGVVTKITEETSD"
     gene            complement(9018..9713)
                     /locus_tag="IBJ56_001314"
     CDS             complement(9018..9713)
                     /locus_tag="IBJ56_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HAM3417572.1"
                     /translation="MLEVIVQNPRDAYLAEKYGANRMEVVSAISEGGLTPSYGAIKEI
                     VRASKLPAMMMIRPHSFSFVYDKAARIVMERDIELAKEVGVQGIVYGGITENGEIDQA
                     LLEKVIEWKGDLDLTFHRALEATKDIEASYQVLRTYGKDINQLLTSGGTANALDSLPR
                     LKRWIQDSEAQPDSFQILVGSGVKPENIATFQATLNHSDYHVGSAAREANDFSKDILK
                     EKIDILQQQINKD"
     gene            complement(9825..10316)
                     /locus_tag="IBJ56_001315"
     CDS             complement(9825..10316)
                     /locus_tag="IBJ56_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HAM3417573.1"
                     /translation="MFKKFLKKSKQEVLFAHVTGQVIALEDVPDPVFNQKMMGEGIAI
                     KPETGTIVAPIDGKIIQLAETKHAFGIRTDMGQEILVHIGLETVSLNGEGFNVLVSVG
                     DKVKVGDPIVEADFDFIEKNAASTVVPMVITNSSEGKYDFDFHAVTKAEAGKTEVITT
                     NLK"
     gene            complement(10431..11333)
                     /locus_tag="IBJ56_001316"
     CDS             complement(10431..11333)
                     /locus_tag="IBJ56_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine/betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HAM3417574.1"
                     /translation="MLKKLITTAVLAMLIFTLAACGTTLAPYDAKKDLGEQINYTITG
                     IDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKRPIVVTGWTPHW
                     MFTKFDLKFLDDPKNVYGNAENIHTIVRKGLKEDKPSAYQVLDNFFWTAEDMSEVMLE
                     VNDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDEIKLTYVAWDSEIASTNVVAEAL
                     KQVGYKPTIQAMEIQPMWASVATDAADGMVAAWLPNTSGIYYKDYKGKFEDLGPNLKG
                     AKIGLAVPKYMTNINSIEDLKTSK"
     gene            complement(11347..12195)
                     /locus_tag="IBJ56_001317"
     CDS             complement(11347..12195)
                     /locus_tag="IBJ56_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline/glycine betaine ABC transporter
                     permease"
                     /protein_id="HAM3417575.1"
                     /translation="MPNIPTIPLASWIDKLVDGLTQFEGFFNVITNIIGGIVDAFQWV
                     FDLVPPWLFIILLVLGTFWVNRKGKKWGLIIFEVVGLLLIWNLDFWRDMTQTLTLVLT
                     SSLIALVIGVPLGIWMAKSNIVESIFKPVLDFMQTMPAFVYLIPAVAFFGIGMVPGVV
                     ASVIFAMPPTVRMTNLGIRQVSTELVEAADSFGSTPWQKLWKVQLPMAKSTMMAGINQ
                     SIMLALSMVVIASMIGAMGLGTRVYFAVGRNDAGGGFVAGIAIVIVAIILDRLTQAFN
                     KKAKSE"
     gene            complement(12188..13381)
                     /locus_tag="IBJ56_001318"
     CDS             complement(12188..13381)
                     /locus_tag="IBJ56_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein"
                     /protein_id="HAM3417576.1"
                     /translation="MSKIKVEELTKIFGKKASKASSLLSQGKSKTEILKETGATIGVN
                     KASFSVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTSGKIWLDGKELSSLNKKELLEV
                     RRKSMSMVFQNFGLFPNRTINRNVEYGLEIQGMDKEEREKNAAESLALVGLAGYGEQY
                     PSQLSGGMQQRVGLARALANNPDILLMDEAFSALDPLNRKDMQDQLLDLQDKMKKTII
                     FITHDLDEALRIGDHIMIMRDGSVVQTGSPEEILAHPANEYVEKFIEDVDRSKVYTAS
                     NVMIRPEIVNFEKDGPRVALKRMREAGTSSVFVVKRNRELVGIVHAAEVSKLVKENIT
                     SLETALHRDVPTTGLDTPLAEIMDTISTTTIPIAVTEDGKLKGIIIRGSVLAALSGNE
                     VNVNA"
BASE COUNT         4057 a         2831 c         2287 g         4376 t
ORIGIN      
        1 agaagcggaa agcgaagtaa aagtacgcca acttttaaaa gatgaacctt tccacatcga
       61 atttgtcgaa aaaattagtg acgcgcactt agcttatgaa aaggaaaacc cagacttcgc
      121 gctctgggaa aaataagcct atatgaaatt tgttaaaaat aatgagacag ctgttttcgc
      181 ccttggtgga ctaggcgaaa tcggtaaaaa cacatatggc gtacaatttc aagacgaaat
      241 tattctaatt gatgcaggaa tcaagttccc ggaagacgaa cttcttggta ttgattatgt
      301 tattcctgac tacagttacc tagttaaaaa caaagataag attaaagggc tttttatcac
      361 ccatggtcat gaagatcata tcggtggcgt tccttaccta cttcgcgatc ttaatatccc
      421 aatttacgct gggaaacttg cgagtgcact tatccgcaac aaattagaag aacatggctt
      481 gcttcgtcaa accaaaattt atgaatatga agaagatgac gtttttaaat tcagaaaaac
      541 aagtatctct ttcttccgta caacccatag tattcctgat acgtatggta ttgttgtcaa
      601 aactccatct ggtaacatcg ttcatactgg tgacttcaag tttgatttta ctccagttgg
      661 cgaaccagca aacctaacaa aaatggctga aatcggtaaa gaaggcgttc tttgtttact
      721 atctgatagt acaaatgcgg aagtaccaaa tttcaccatg agtgagcgtg tcgttggcga
      781 aagtattaaa aatattttcc gcgatgtaga aggacgaatt attttcgcta ccttcgcatc
      841 taatatttac cgtttacaac aagtagttga atcctctatc gaaactggcc gtaaaatcgc
      901 tgttttcggt cgtagtatgg aatctgctat ggaaatcggt aaacaattag gctatattca
      961 agcgccaaaa gatacattta ttgatgtgca tcaacttaat aaaacacccg ctggaaatgt
     1021 gactatcctt tgtacaggga gtcaaggtga accaatggct gctctttcta gaattgctaa
     1081 tggtacgcac cgccaaatcc aaattcaacc aggtgacacg gtagtcttct cgtcttcccc
     1141 aatccctggt aatacaacga gtgtaaaccg cacaatcaat ttactatatc aagctggtgc
     1201 agaagttatc catggtaaag taaataatat ccatacttct ggtcacggtg gtcaacaaga
     1261 acaaaaacta atgcttcgtt tgatgaaacc taaattcttt atgccaattc atggtgaatt
     1321 cagaatgcaa aaaatccatg cagagtctgc tgaagaatgt ggtgttccag aagaaaatag
     1381 ctttattatg gcaaatggag atgtactcgc attaacaagt gaaacagctc atgttgctgg
     1441 taaaatccat gcagcaagcg tatatattga tggtagcggt attggcgata tcggtaatat
     1501 tgtccttcgc gatcgtcgta ttctttctga agaaggcctc gtaattgttg ttgtatccat
     1561 tgatatgaaa aattctcgtg tgatggcagg acctgatatt atttcacgcg gcttcattta
     1621 tatgcgtgaa tccggtaatc tcatcggaga agcacaaggc ctcctaacgc gacacttaaa
     1681 taaagtaatg gaacaaaaaa caacgcaatg gtctgaaatc aaaaatgaaa ttacagatac
     1741 tttgcaacct ttcttgtacg aaaaaacaaa acgtcgtcca atgattttac caataatcat
     1801 ggaagtatag ttttcaagac gataaatggt ttcaaaatca tttatcgttt ttttgttgat
     1861 ttctcagaaa gacgatggta tgtttaaaca aacaaaatag aaagacgagg aaaattttat
     1921 gacagaaact agggctgaaa aaaagaaaaa aacaacgtcc acttttacta aagttatgaa
     1981 aattgctagt gttgctcttt taggaattat cttcttctct ataacaggat tggcagcgaa
     2041 gtattacatc accgttcaaa ataccttttc aaaaataaat gtccctctag aatcaagtaa
     2101 taaaacttta agtgatttag aaaagaaaaa acctttctca gtgttactca tgggttcaga
     2161 tgcccgacct ggtgaaaaaa atggtcgcgc agatacaatt attcttgcca cagctaataa
     2221 acaacaaaat gccgtagaaa tggttagtat tcctcgtgat acaaaagtag actacggaaa
     2281 tggtgacatt ggtaagatta atgcctctta ctccaacggt ggcccctcag gaacagtttc
     2341 agcggtcgaa aaacttatgc caggagttcc cgtagattat ttcatttcaa tcaatatgga
     2401 gggctttaaa gacctagttg atgcagttgg tggtattact gtttataacg atatcgactt
     2461 aacagaagta aatagcaaat ttgttaaagg taacattact ttaaacggaa cagaagcttt
     2521 acaatatgtt cgtattcgtc atgaagatcc tcgtggtgac tttggtcgtc aagatagaca
     2581 gcgcgatgtc attattggta ttgcgaataa ggttatcagt tcttccggag tttccaattt
     2641 tgaaagcatt atgaaagccg ttggcgataa tttccaaact aatatgacgc ttacagatat
     2701 tacatccatg gctgcaaatt attcttccgt acttaaaaac gtcgattccc aagaacttaa
     2761 aggcgaaggg gaaatgattt atagcgagtc ttatggattt gatttatatt acttcgcccc
     2821 tgataaaaca gatttagagc gaataattac tatgtttaaa aagagtttag atattactga
     2881 ataaaaaaga tgacggaagc ttgaacgagc ttccgtcatc ttttttattt atgtttcgta
     2941 ataagtgcat ccatctctgt aattactttc gcgcatgctt gttggtgata agcaaataca
     3001 acttcataat taggttcaga ctctttttca agcgtcacat gatataaaat ttcaatatta
     3061 ttaattgctt gctctactaa atgagtaaaa tgaagcattg gttcatcaga agtcaaactc
     3121 gcaacaaaac tgctatctgt aataatttgt tcgcgtgttt ttcttaaatc tatcaactgt
     3181 ttccacaaac cttttatttt gggagctaga gattttgcat cttcgctatt tatatcaatt
     3241 tcttttattc tttctaaaac tgccttttcc tgagaaataa acacttgatt taattttttg
     3301 tttttcttgc gtgggtaaag cgcatagaca acaaaaccga tcacaagacc aatcatcgta
     3361 tcaaatagtc ggtctcttaa aaagactatc ggctctccgt cgccttttcc gacaagtacc
     3421 attactgtaa taacaacaat aaccatcgtg aattttttag taaatagata gcttagcata
     3481 actgcaagtg ctgcgccaat cggaatcata atataatgat ggttgggaac tagcaagtat
     3541 acaaaggctg caagcagtcc acctacaata gtaccgataa tccgctcaat gcttgattta
     3601 tatgtatccc ccttactcat ttgtgcggta atataaatag cattaaatac gtatgttgga
     3661 tacacaatcc aatcacccat aatagggaat aaaatcactg ctatcgtaat actaataagc
     3721 actttaataa ctcgtggatc aagagcgaaa cgttctctca tagaaatctt tttcatttct
     3781 gctctctccc ttccactaat tctttcattc caaccttaat agctaggaag ttctcaacaa
     3841 attttttcac gtgaaatgag gcaactggat tggcttcttt cgcgttaatt tcatcagaaa
     3901 ctttcacgtt aatctgagca agggcctgtt tcgcttcttc cgacaaacca actcgtccaa
     3961 tgtcctccat tgtttgcata tgaaaaaaaa gttgaagata attaggcagt aacgcttgat
     4021 acagctccac atgacgagga ttcgcttttt tactagcact atattcttta ataaacattt
     4081 gtgactgaac aaaaatacta tacaatggtt ttgctataaa tttaccatta tttttaaata
     4141 cactttcaat ttccttgtca aatagtccta ccaattgttt cataatagtt tgaacggttt
     4201 tttcgagtgg taaatgtaca tattttacga ctaactgcac cagtaaaaag aacacaaaca
     4261 catctattaa cgcgacaatt atcatagtat agagaggcat tggcaaatca tctgttccaa
     4321 gaaagtaaag tgctgtccca atcgcgagtg tcattaccat atatttctgc ggcatcaaga
     4381 aattcaccgc caaaataaca actatcatga caacatagta aatatacaca ttgattggga
     4441 aaaaataggt gcttataatg acaaaaatac acgctagagt gaatgctagc gctatttggg
     4501 gaatgacttt tctggtaatt ccatatgtag gttgcattga aataatccct attagtacca
     4561 ctataggtaa aaccccggcc aaatcaggaa aaataactgt atggaccact acacaaatgc
     4621 tcgcataaat aaatgcttgc aacatctgaa taagtcctcg agcgccgatt ttatcaagca
     4681 aaaatttctt catctgttcc ccctccttct gtccctttat gtgaagctct gtaactataa
     4741 tagaaaataa ctggctagat agcaagcggt aattcgcaaa caataaaaaa aacctaagaa
     4801 tatactagac atgttgacat atctctttat attacatagg ttttcttttt attgaatttt
     4861 ttcttgtagt cgttcaatgt catcatccga accgataacg attagaatat ctccttcatg
     4921 tagaacatca ttggcttcag gagtaataat catttgttta tcttttttaa taccgacaat
     4981 attgacacca aaagagttac ggaaatctaa atcaactagg ctctttccaa ggaaacgtgg
     5041 atcagataca gagatttcga ctagactata ttcatccgat aattcaagat aatctagcat
     5101 gtttttcgat acgatgtaat gcgcaatacg tcgtcccatg tctcgctcag gatggacaac
     5161 ccggtctgct ccgattttat caagcaattt ggcatgttta tcattcgtcg cttttgcggt
     5221 aacgtatttt acgcccattt cttttaaaat aagtgtagtt aagatactcg actgaatatc
     5281 ctcaccaatc gcaacgataa catgctcaaa attacgaata ccaagctggc gtagcgcgtt
     5341 ttcatctgtt gaattagcga taactgcatg ggtcgcaatg gacatatatt cgttgacacg
     5401 ttcttcatcc gaatcaatcg caagtacttc cattccttgc tcgacaagtg aacgacaaat
     5461 acttccgccg aatcgcccaa gaccgatgac tgcaaatcct tctttcatgt gtacgttacc
     5521 tccttgctac tttttttcta ctaagtcatg tttaaatgca tagattgctg cttgcgtacg
     5581 atcttgcaca tctaatttcg ataaaatatt acttacatgc gtcttcaccg tttttaaagt
     5641 gatgaaaagt tcgtctgcga tttcttggtt ggatttacct tccgcgatta aaagtaagat
     5701 ttcattttca cgattcgtta aatcatcatg taagtttttc tctggtttag cggttagccg
     5761 ttgcatcatt ttgccagtta cttctggttc aagaacagag tctccgccgt atgtagctcg
     5821 aatcgcatct gcaatttcgc tcgctgttga agttttaagc atataactgc tcgctccagc
     5881 ttcaagtgcc gggtatactt tttcatcatc aataaaactt gtaacgataa ttatttttgc
     5941 ttctttccag ttttgcataa tttcttttgt ggcttcgatg ccgtccattt catccataac
     6001 taaatccatt aaaataatat ctgggcgtag ttctagagcc atatcagccc cttcacgacc
     6061 gttctctgcc tcgccaacca cttccatgtc atcttgcaca gaaagataag ctgagacacc
     6121 tatacgtacc atttcatgat catctacaag taatactttt atcattcgct ttccacgtcc
     6181 tttttcgcaa caagtgggat ttttatttct acactagttc ctcttcctgg gaaactaatt
     6241 attttgatgg tgccgccgaa ttcagcaact cgttctcgca tattttgtaa tccataagag
     6301 ccttgtcgaa cattatccat atcaaaccca acgccgtcat caactacttt catcaccgct
     6361 aaattatcca tcgttacgag gcgtacttct aataatttag ctttagaatg tcgtaatgta
     6421 ttggaaagta attcttgaac aatacggaac aaatgatcct caatgccttt ttgcaaacta
     6481 atatcctcga tttgccattc tacttcgatt ggcaatttgg ttgttaattc ttttaataat
     6541 tgctcaatac cagtttttaa tgatttaccc tcgagttgcg ttggacgcag atgaagtaaa
     6601 agcgcccgca tctctgattg ggattcattt acgatagatt caaccatttt tagttgtttt
     6661 tgcatcgccg gtgttgcgct tttttcactc tgttcattca aagctgataa aagcatcatt
     6721 gctgcaaaaa gctgttggct cactgaatcg tgtaattctc tagcaatccg gtgtctctct
     6781 tctgacaaaa tagcttcttt cgtttggcca gttgattcag cacggtcgct tgcaagtttt
     6841 tgtgtcaaaa tcgtttgtgc tttcatttta tcacgtaagc ggtcgatttg cttgtatact
     6901 tgctgcactt ctaaaaagtt ctcgtcttct tcactcgtaa tctttttctc caaatcgcct
     6961 tgtccgagca gccgaatcga aaagtcaatt gattcaaatt tttgtttaac aaaatacccg
     7021 agcaaaccgc ctataattaa accaatcgaa atggctgtaa gcggaacgaa aaccacaaag
     7081 ggaatgtaaa agattttttg ttcgatgaga attttatacc aagaaccttc actaaaaaaa
     7141 tagtaaccga ccgtaccgat ggctgtagca acaagtagta accctgagca aacagccatc
     7201 atcagtttcg aaaaactcat agtctaatca cctctaaatc tccgaagatt acagaagtca
     7261 tgattttcac ttttcgtgcg gaactttcgt aattatctga gtagaccttg atgctattat
     7321 tttgaataga ggtgctttct ttatcatatt ggatgtttcc gaaaattgcg gaatgttcaa
     7381 tgcaaatacc gatatcaaat ggaacaagta tccgaatttt tcctgagaca ctacgaatca
     7441 taatgacact ttcgccagtt ggtaaaaccg tgttccctaa atcaagaatc gtatctccaa
     7501 tccctgtttg aatattgatg tcatcccatt catacactac atcaagtata cgctggttac
     7561 cgaaccactg attacgaata aacttatccg tacggtcaat cttgctgtca ggttctctcg
     7621 ttttgagcat caataattgg ggtgcccgct tcctactaat gtagtgaatg atcgcataaa
     7681 tacctgcaac aacaagccca actttaaacg tggttgtaag taacacggcg ataatgataa
     7741 atacgatacc aataaataat gagtttcttg cacttttctt tgttgcgctt gccttccttg
     7801 atgtaaagat aaaaaatatc ccgagtgcaa ataaaataag caactcccac tggaacagca
     7861 tctccaaacc aacgccaaca ataatcgcaa ttaaaaatac aaaaacaacc gagctttcca
     7921 tttttttcaa gctgacacac ctccttacgt tcctcttttg acaaagttat ttctcgattt
     7981 ttgctacttt gtacatgctg tgttaattat agcgaggatt tactgattga aacaaccgcg
     8041 ctagttggaa catcccctac tactttagtc cgatgtttct tccgttattt ttgtaacgac
     8101 accattctct tgagtgattc gtcttgcttt taaaagcgta ccaattgcac gcttgaattg
     8161 ggctttacta ataccaaatt tggcacgaat ggcatctgga tctgatttat ctccgaatgg
     8221 catttctccg ccaacacttc gcaaataagt taaaatcatt tccgcgtcat catttaatac
     8281 ttcatgtgct ctaccacgaa gcgataaatt aagagacccg tccggtttta cagcgataac
     8341 acgagccttc acacgttcgc ccattcttgg ttccgaagtt cgttcacttt catgtataaa
     8401 tccaatatga aaatcatccg taaaaacaaa tgaaccgact tttaataaac gataaatagt
     8461 tccttcgaca ttatggttaa atagatcttg ttctgcacga acggcaattg cgcggaattg
     8521 ttcttcttct gcaaggacgc cccaaacacg attttcttca tccacacgta gcgcaatcat
     8581 cacgcgatct tcttttttcg gccacaagtg tggtaatgca ggtaagtcat ccaatgatac
     8641 caccacgtct ttttcaatgc cgatatcgac aaaaacacct aaatgtttac gtacttctgt
     8701 caccgttccc cagccgtaat gccctacttg aatttttgga ataatcgttg ttgctgcaat
     8761 ttcgcggtca tagtccacaa aaataaatac ggttacttct gctccaacag caagttccgt
     8821 ttcatgtgta tttgatttag ataaaaaaac agttactccg tctttttcaa ggagccatcc
     8881 tgtatctttg atttctttca ctgtcattat ttggcttttg ccaatatagt tattcacttt
     8941 ttttccacct tttccttaag aatagtcttg tttcattata gcttatctaa gcttgtaagg
     9001 ctacctgcta cgaagaatca atctttgttt atttgttgct gtaaaatatc gattttttct
     9061 tttaaaatgt ctttggaaaa atcattggct tctctagccg cacttcctac atggtagtcg
     9121 ctatgattta atgtcgcttg gaaggtcgcg atattttctg gtttgacgcc acttccaact
     9181 aaaatttgga atgaatctgg ctgtgcttcg ctatcttgaa tccagcgttt taggcgtggc
     9241 aaagagtcaa gtgcgtttgc tgtaccacct gaagttaata attggttgat gtctttccca
     9301 tatgtacgta aaacttggta actcgcttcg atatctttag ttgcttccag cgcccggtgg
     9361 aaagttaagt ctaaatcacc tttccattct attacttttt cgagaagagc ttgatcgatt
     9421 tctccatttt ctgttatacc accataaaca atcccttgca caccaacctc ttttgcaagc
     9481 tcaatatctc gttccatgac tattctggct gccttatcat agacaaaaga aaaactatgt
     9541 ggtcgaatca tcatcatcgc tggtaactta gaggcacgta cgatttcttt aatagcacca
     9601 taacttggag tcaaaccgcc ttcgcttatt gctgaaacta cttccattct attcgcgccg
     9661 tatttttccg ctaagtaagc gtctcttgga ttttgaacta tcacttctaa catattattc
     9721 cgctcctttt aattactaat taccttcatt ctaccctttt atgacgtgct tgaatacaaa
     9781 aaaatccatg aaaagaaaat taccttttca cggattttgt ttcattattt taaattagtt
     9841 gtaatgactt cggtttttcc tgcttctgcc ttagttacag catggaaatc aaaatcatat
     9901 ttaccttctg agctattcgt tataaccatt ggtacaacag tacttgcagc atttttttca
     9961 ataaaatcaa agtcagcttc tacaatagga tcgcctactt ttactttatc tcctacactg
    10021 actaaaacgt tgaacccttc tccatttaag gatacggttt ctaagccgat atgtacaaga
    10081 atttcttgtc ccatatccgt acgaatgcca aaagcatgtt ttgtttctgc caattgaata
    10141 attttcccgt ctattggagc gacaatggta ccagtttctg gtttgattgc aatgccttct
    10201 cccatcattt tttgattaaa aactggatct ggaacatctt ctaatgcaat aacttgccca
    10261 gttacgtgag cgaatagtac ttcttgtttc gattttttta aaaatttttt aaacatgcat
    10321 cttcctccta gcaatttcat gaatcaacta ctattttacc cttatagaga aaaaaaggca
    10381 cggagaaact atcaagcatc acttgatttt cttcatgcct ttttaaacgt ttatttgctt
    10441 gtttttaaat cttcaatgga attaatgttt gtcatgtatt ttggaactgc tagaccgatt
    10501 ttagcacctt ttaagtttgg tcctaaatct tcaaattttc ctttataatc tttgtagtag
    10561 atcccggaag tatttggaag ccatgcagca accataccat cagctgcatc cgtagcaacg
    10621 gacgcccaca tcggttgaat ttccattgct tgaatcgttg gtttgtagcc aacttgtttt
    10681 aatgcttctg cgacaacgtt tgtagaggca atttcagaat cccaagctac ataagttaac
    10741 ttgatttcat cgccatctac tttttccacg ccatccgtcc attttgctac tttttctgga
    10801 ttatttttaa tccatttttt agcggcttct tctggatcta caccgtcatt aacttcaagc
    10861 attacttcag acatatcttc cgcagtccag aagaaattat ctagcacttg gtaagcggaa
    10921 ggtttatctt cttttaagcc tttacgtaca atggtgtgga tattttctgc attaccataa
    10981 acatttttgg gatcatccaa aaatttcaaa tcaaattttg taaacatcca gtgcggggtc
    11041 caaccagtca caacaatcgg gcgcttatct ttcatcgctt tttgaagtgt acttgtcatc
    11101 gccgcggtag aacttgtttg taattgccaa ttatcatcat ctaaatggta atctttaatc
    11161 gcattttgtg ttgcaagcat aattcctgct ccagcatcaa ttcctgtgat tgtataattg
    11221 atttgttcgc ctaaatcttt tttcgcgtca taaggagcaa gggttgttcc gcaggctgct
    11281 aaagtgaaaa taagcatagc caaaactgcg gtggtgatta atttttttag caatctactc
    11341 tcctcctcat tctgatttcg cttttttatt gaaagcttgt gtcagacggt ctaggatgat
    11401 tgctacgata acaatcgcaa tcccagctac aaatccgcca ccagcgtcgt tacgtcctac
    11461 tgcgaagtaa acacgtgttc caagtcccat tgcaccgatc attgaagcaa ttacgaccat
    11521 ggaaagtgct aacatgatac tttggttaat acccgccatc atggttgatt tcgccattgg
    11581 tagctgtact ttccaaagtt tttgccaagg tgttgaaccg aacgaatcgg ctgcttctac
    11641 aagctctgtt gaaacttggc gaatacctag attagtcata cgaacagttg gaggcattgc
    11701 gaaaataaca gaagccacaa cccctggaac cattccaatt ccgaaaaatg ctacggcagg
    11761 aattaagtaa acgaaggctg gcatagtttg cataaaatcg agtaccggtt tgaagatact
    11821 ttcaacaata ttgcttttcg ccatccaaat accaagtgga accccaataa caagcgcaat
    11881 taaactactt gtcagaacga gcgttaatgt ttgtgtcata tcacgccaga aatctaagtt
    11941 ccaaattaac agtaaaccga caacttcaaa gataattaaa ccccattttt tgcctttacg
    12001 gttaacccag aaagttccaa gtactagtaa aataataaat aaccacggtg gaactaaatc
    12061 gaacacccat tggaatgcat caacaatccc gccaatgata tttgtaatta cattaaaaaa
    12121 tccttcaaat tgcgttaagc catccactaa tttgtcaatc caactagcta atggaatcgt
    12181 tggaatatta ggcattaacg ttcacctcgt ttccagaaag tgcggccaga acggatccgc
    12241 gaatgataat tccttttaat tttccatctt cggttacagc aatcggaatc gttgttgtcg
    12301 agatagtatc catgatttct gcaagtggcg tatctaggcc agttgtaggt acatcacgat
    12361 gtaaagctgt ttctagtgaa gtaatatttt cttttactag tttagaaact tccgctgcat
    12421 ggacaatacc aaccagctca cgattacgtt taacaacgaa tacactggaa gttccagcct
    12481 cacgcatccg tttaagcgca acacgaggac catctttttc aaaattaacg atttctggac
    12541 gtatcattac gttgctcgct gtataaactt tggaacgatc tacatcttca atgaattttt
    12601 caacgtattc atttgctgga tgtgccagaa tttcttccgg ggaacctgtt tgaacgacag
    12661 agccatcacg cataatcata atgtggtcac caatacgtag tgcctcatcc aaatcatggg
    12721 taataaagat gattgttttc ttcattttat cttgtaaatc tagtaattga tcttgcatat
    12781 cttttctgtt aagtgggtca agtgcagaga aagcttcatc catgagtaaa atatctggat
    12841 tgttagcaag tgctctcgca agccctacac gttgctgcat cccaccagaa agttgcgaag
    12901 gatattgttc gccgtaacca gctaaaccaa caagtgcaag cgattctgct gcatttttct
    12961 cgcgctcttc tttgtccatt ccttgaattt caaggccgta ttctacgtta cgattaatcg
    13021 ttctattcgg aaataaacca aagttttgga agaccatact catgcttttt cttctaactt
    13081 ccaaaagttc ttttttattt agactagata gttcttttcc gtcaagccaa atttttccgc
    13141 tcgtaggctc aattagacgg tttaaaagtc gtaccaaagt cgacttccca ctacctgaaa
    13201 gccccataat aacgaaaatt tctccttctt ctacgctaaa agatgcttta ttaacaccaa
    13261 tagtcgcccc tgtttctttc aaaatctctg ttttcgattt cccctgagaa agtaaagaag
    13321 atgctttaga agcctttttt ccaaaaatct tcgttagctc ttctacttta atcttgctca
    13381 aaataaaatc ccctttcttt ttttagattg aattatttat taggcaaaaa ttcggcccat
    13441 atcactttta aaaaaagcaa taacatttat cattgtacac aagttttggc tcagtttcac
    13501 atcatacagt ttggtttgcg ctattttgca cattttagaa agcgcctcca t
//
LOCUS       DABQVC010000064        13530 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.064,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000064 DABQVC010000000
VERSION     DABQVC010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13530
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.064"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(30..1481)
                     /locus_tag="IBJ56_001319"
     CDS             complement(30..1481)
                     /locus_tag="IBJ56_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HAM3417577.1"
                     /translation="MTTSPFSLKSRSLKFKWTFGASAAIFLTFFLFSYAIYQGIGQML
                     LNEEEPEVKELLLATTSTLTNQDLTDNEEIKYLFNNDKTVNRKLQDQVINLYDKDGHF
                     INKYYFSRSQDITSIDFSQYFVSGTDKFIMNKPTIDGQKMMTAQMPIVADDNTTVIGY
                     AQVVNPLTSYNRMMDRLLVTMILLGAVALFISGMLGYLLAQNFLNPLTRLARTMNDIR
                     KNGFQKRIETKTNSRDEIGELTVVFNDMMTRIETSFEQQKQFVEDASHELRTPVQIME
                     GHLKLLTRWGKDDPAVLDESLNASLTELERMKKLVQEMLDLSRAEQISQTKELQITDV
                     NATVEQVRRNFEVMYENFTFTLKEDDTDLRALIQHNHLEQILIIIMDNAVKYSGDGTE
                     VDMHVYKEQKQIHIDVRDYGEGISQEEIDKIFNRFYRVDKARSREKGGNGLGLAIAKQ
                     LVEGYLGTINAVSEPDKGTTIKITLPYIEPKSK"
     gene            complement(1478..2158)
                     /locus_tag="IBJ56_001320"
     CDS             complement(1478..2158)
                     /locus_tag="IBJ56_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010763438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3417578.1"
                     /translation="MNRILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNE
                     EWDAILLDLMLPHLNGVEVCRRVRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKP
                     FAIEELLARLRSLLRRVENAEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYE
                     LLLTLMENVNIVLTREVLLNKVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVR
                     GTGYVMRT"
     gene            complement(2349..3767)
                     /gene="gndA"
                     /locus_tag="IBJ56_001321"
     CDS             complement(2349..3767)
                     /gene="gndA"
                     /locus_tag="IBJ56_001321"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HAM3417579.1"
                     /translation="MAKQEIGVIGMGVMGRNLALNIESRGHTVSIFNRSTEKTKAVME
                     ENADKKLVPTYSLEEFVESLEVPRRILIMVKAGDATDMMIEAVKPFLNEGDILIDGGN
                     AFFKDTIRRNKELSEEGFNFIGTGVSGGEEGALKGPSIMPGGQRKAYDLVAPILREIA
                     AVADGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYTILKEIGGLSHDELADVF
                     EEWNNGELDSYLIEITKNILKVKDEETGKPIVDVILDKAGQKGTGKWTSQSALDLGVP
                     LSLITESVFARYISALKDERVYASTVLSGPSNYRFEGDKKAFVESVRRALYFSKIASY
                     AQGFAQMRAASEENDWDLQYGEIAKIFRAGCIIRARFLQKITDAYNKDKNLKNLLLDP
                     YFKDIAHNYQGDLRTVVAEAVKAGIPVPTFTAAISYYDSYRSEVLSANLIQAQRDYFG
                     AHTYERVDKPGVFHTEWPQVED"
     gene            complement(3912..5009)
                     /locus_tag="IBJ56_001322"
     CDS             complement(3912..5009)
                     /locus_tag="IBJ56_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HAM3417580.1"
                     /translation="MMISNVKKYFTELIQTPSVSGKETAILTYIKKHLAKLNIEYSLD
                     EDYGLIARIPATKKKFPTIFFCSHVDTHPNAATPVFQMEQDVFTVEEGTSLGADDKAA
                     VAAMLAAIDYFCAERTAHGEIEFIFTTKEELGMIGMRLFPEEKITAAYGYCLDAPGEV
                     GNYQLQANTLVALEFTIASSEAAQMSPISIARMALHATRPGRIDRENKWEIQSFSGGI
                     NDENQQDAQLEVLFTSAASFRKALLHIQTIRERFAQTCEKYGALLTHDTKLIYEGYRI
                     RSKHPLMNIFQKAAKKQSLETREIFLEGGTDANVLNEKGIPTMLLSAGYENAHTEEET
                     VSVEQLEKLTQLVIDLAESAKNEKILLRKLN"
     gene            5127..5222
                     /gene="prli42"
                     /locus_tag="IBJ56_001323"
     CDS             5127..5222
                     /gene="prli42"
                     /locus_tag="IBJ56_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stressosome-associated protein Prli42"
                     /protein_id="HAM3417581.1"
                     /translation="MTNKKVVRVVVILMLIAIVLSSVLTGVLMFL"
     gene            complement(5379..6629)
                     /locus_tag="IBJ56_001324"
     CDS             complement(5379..6629)
                     /locus_tag="IBJ56_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HAM3417582.1"
                     /translation="MAVEKITMPKLGESVTEGTISSWLVKPGDTVEKYDAIAEVLTDK
                     VTAEIPSSFSGTIKEILAEEDETLEVGEVICTIETADAGSSEPVAEVEETETKAPEKQ
                     ETKQVKLADAPASGRFSPAVLRIAGENNIDLSTVEGTGKGGRITRKDLLQVIENGPVA
                     KREEMKSAPQEKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEV
                     DATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHAN
                     INISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVN
                     STGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGL
                     LAGKFLQAIKANVEKISKENTALY"
     gene            complement(6660..7643)
                     /locus_tag="IBJ56_001325"
     CDS             complement(6660..7643)
                     /locus_tag="IBJ56_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HAM3417583.1"
                     /translation="MPIISYIDAITMALKEEMERDDKVFILGEDVGKKGGVFKATAGL
                     YDEFGEDRVLDTPLAESAIAGVGIGAAMYGYRPVAEMQFADFIMPAVNQIISEASRIR
                     YRSNNDWSCPIVIRAPFGGGVHGALYHSQSVEKVFFGQPGLKIVVPSSPYDAKGLLKA
                     AIRDNDPVLFFEHKRAYRLLKGEVPETDYIVPIGEANVVREGDDITVITYGLAVQFAQ
                     QAAERLAAEGVEAHILDLRTIYPLDQEAIIEATKKTGKVLLVTEDNKQGSIISEVAAI
                     ISEHCLFDLDAPIARLAGPDTPAMPFAPTMEKHFMINPDKVADAMKELAEF"
     gene            complement(7660..8655)
                     /locus_tag="IBJ56_001326"
     CDS             complement(7660..8655)
                     /locus_tag="IBJ56_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HAM3417584.1"
                     /translation="MTLKEAGLTEDKLIKMYETMLMARRLDERMWLLNRSGKIPFTIS
                     GQGQETAQIGAAFAFDLDKDYALPYYRDLAVVLAFGMTAKDIMLSAFAKAEDPNSGGR
                     QMPAHFGQKSNRIVTQSSPVTTQFPHAAGIGLAAKMAGDEIAIYASTGEGSSNQGDFH
                     EGINFASVHKLPVVFVIHNNQYAISVPASKQYAAEKLSDRAIGYGIPGERVDGTNMGE
                     VYAAFKRAADRARNGEGPTLIETVSYRFTPHSSDDDDSSYRSREEVDEAKGKDPLKIF
                     QAELLEEGYLTEEKIAEIEKSIAKEVNEATDYAESAAYAEPESSLLYVYDEEANS"
     gene            complement(8680..10107)
                     /gene="lpdA"
                     /locus_tag="IBJ56_001327"
     CDS             complement(8680..10107)
                     /gene="lpdA"
                     /locus_tag="IBJ56_001327"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HAM3417585.1"
                     /translation="MATEYDVVILGGGTGGYVAAIQAAKNGQKVAVVEKGKVGGTCLH
                     RGCIPTKALLRSAEVLQTVKKASEFGISVEGTAGINFLQAQERKQAIVDQLEKGIHQL
                     FKQGKIDLFVGTGTILGPSIFSPTAGTVSVEFEDGSENEMLIPKNLIIATGSKPRTLN
                     GLSIDEENVLSSDGALNLESLPKSIIIVGGGVIGMEWASMMHDFGVEVTVLEYADRIL
                     PTEDKEVAKELARLYKKKKLIMHTSAEVQAASYKKTDTGVEIKAIIKGEEQTFAADKI
                     LVSVGRSANTENIGLQNTDIATENGFIQVNDFYQTKESHIYAIGDCIPTIQLAHVAME
                     EGTIAANHIAGKVAEKLDYDLVPRCIYTSTEIASVGITEEQAKERGYEVKKGKFFFRG
                     IGKALVYGESDGFIKIIADKKTDDILGVSMIGPHVTDMISEAALAQVLNATPWEVGNT
                     IHPHPTLSESFREAALAVDGNAIHG"
     gene            complement(10122..11189)
                     /locus_tag="IBJ56_001328"
     CDS             complement(10122..11189)
                     /locus_tag="IBJ56_001328"
                     /EC_number="2.7.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate kinase"
                     /protein_id="HAM3417586.1"
                     /translation="MSFDVLTINPGSTSTKLAVYQGDKVLFEETVRHTMQELADFNNV
                     QEQFDFRWQVLRRVMDAHGYDVKKLQAVVGRGGLLRPVAGGTYMVTEKMIDDLKENKY
                     GEHASNLGALLAKKLADELTIPSFIVDPVVVDEMQEIARISGNAFITRKSIFHALNHK
                     AAGRKIAKELGKDYEKMNFVIAHLGGGISVAAHRQGKAVDVNNALDGDGPFSPERSGS
                     LPMNDFLEACFSGKWTKRELHELIVGRGGMISYLGTNSMLEVEAKVQAGDVKAIEAFD
                     AMAYQVSKEIGACSVVLQGKVDAIILTGGLARSELFTNKIIEQTNWITSVIIEPGEDE
                     LEALNSGVQRVLAGLEKEKEY"
     gene            complement(11326..12192)
                     /locus_tag="IBJ56_001329"
     CDS             complement(11326..12192)
                     /locus_tag="IBJ56_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HAM3417587.1"
                     /translation="MTKSRFFSDVAETSSFVFAVAGADDEVVLETIRLALNQNLGKFL
                     LFGKKEDKTLTANENVTWIQTDTAEAAAQGAILAVKNKEADILVKGFIPTATLMHHVL
                     KKENGLRTDQLLSQIAIFDIPTYHKPLLITDCAMNVAPKTKEKIAITENAIAVAHQIG
                     IANPKIALLSAVEEVTAKMPSTVEAQEVVQHFDNTIAVSGPLALDVAISKEAALHKGI
                     TDSSAGEADILIAPNIETGNALYKSLVYFAGAKVGSAVVGAKVPIVISSRNDSPENKL
                     ASFILTVRLVEK"
     gene            complement(12322..>13530)
                     /gene="recN"
                     /locus_tag="IBJ56_001330"
     CDS             complement(12322..>13530)
                     /gene="recN"
                     /locus_tag="IBJ56_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HAM3417588.1"
                     /translation="KYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENAN
                     LQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQGEPGGLEFVGEAMRQMEAAASIHT
                     DYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKTI
                     EDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEK
                     QIKQELNHLYMEKAIFSVRFEANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGE
                     LSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIYAVSVGSQVLCISHLP
                     QVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMI
                     EQAEKVKQTY"
BASE COUNT         3623 a         2891 c         2333 g         4683 t
ORIGIN      
        1 cgcaacctcg tcataaggtt gcggtttttt tatttagatt ttggttcaat gtaaggaagt
       61 gtaattttta tcgttgtacc tttatctggc tcactaaccg cattaatcgt tcctaaatat
      121 ccttcgacta attgtttagc aatcgcaagt ccgaggccat taccaccttt ttcgcggctt
      181 ctggctttat ctacacggta gaagcgattg aatattttat caatctcttc ttgtgagatg
      241 ccttccccgt aatcgcgcac atcaatatgg atttgctttt gttctttata gacatgcata
      301 tccacttcgg tgccgtcacc tgaatacttc acagcattat ccataataat aattaaaatc
      361 tgctctaaat gattatgttg aataagtgct cgtaaatcag tatcatcttc ttttaaagta
      421 aacgtgaaat tttcatacat cacttcaaaa ttacgtctta cttgttctac tgttgcattt
      481 acatcggtaa tttgtaattc ttttgtttgt gaaatttgtt ccgctcttga taaatcaagc
      541 atttcttgta ctaatttttt catacgttct aattccgtta acgaagcgtt taatgattca
      601 tcaagtacag ccggatcatc ttttccccaa cgagtgagta attttaaatg gccttccata
      661 atttgcactg gggtacgtaa ttcatgagaa gcatcctcta cgaattgctt ttgctgttca
      721 aaactagttt caattcgtgt catcatatca ttaaaaacaa cggtcaattc gccaatttca
      781 tcgcgggaat tggttttcgt ttcgattcgt ttttggaaac cattttttcg aatatcattc
      841 attgttcgag ctagacgagt cagtgggttt aagaaatttt gtgctagcaa gtagccgagc
      901 attccactaa taaagagcgc cactgcccca agtaaaatca tcgtaacgag aagccggtcc
      961 atcatccgat tataggaagt gagcggattt accacctgcg cgtaaccaat cacggtcgta
     1021 ttgtcgtccg ctacaatggg catttgcgcc gtcatcatct tctgtccgtc aatcgttggt
     1081 ttattcataa taaacttgtc cgtaccacta acaaaatact gcgaaaaatc aatgctagta
     1141 atatcttgac ttcttgaaaa ataatactta ttaataaaat ggccgtcttt atcatacaga
     1201 ttaattactt gatcttgtaa ttttcgattc accgttttat cgttattaaa taaatactta
     1261 atttcctcat tatcggtcaa atcttgattc gttaaagtgc tcgttgttgc tagaagcagt
     1321 tcttttactt ctggttcttc ttcatttaac aacatttgcc caattccttg gtaaatggca
     1381 taggaaaata agaaaaaagt tagaaaaata gctgcactag ctccaaaagt ccatttgaat
     1441 ttcaaagaac gactttttaa ggaaaatggg ctagtcgtca tgtacgcatc acataccctg
     1501 tcccgcgaac tgtttggata taactttctt cgtcaggatg atcaatttta tttcgtaagt
     1561 aacgaacgta cacatccact acatttgttt ctacttctgt ttcataaccc catactttat
     1621 tgagtaacac ttcccgcgta agaacgatat taacattttc cattaacgta agtaaaagtt
     1681 catactctcg ttttgttaag tcaatgattt cttcgtcgcg tttgacaatg cgattttcct
     1741 tttcaacaat tagattacga tactgtagcg ttgtttgttt agcagattgt tctgcatttt
     1801 ccacccgacg caatagcgag cgaaggcgcg caagtaattc ttcaatagcg aagggtttga
     1861 cgatgtaatc atctgctccg tgatccagtc cggatacacg gtcgataaca gagtcacgtg
     1921 cggttatcat aataatgggt gtttgtttca cttggcgtac acggcgacaa acttctacac
     1981 cgtttaaatg cggcaacatt agatcgagta aaatagcatc ccattcttca ttaagtgcga
     2041 gttctagtcc agcacgtcca tcattagcaa ccgctgtttc ataattttca tgttgtaatt
     2101 cgagttcgat aaagcgtgct aagttttttt catcttctac gattaatatt ctattcattt
     2161 ggcctaaccc tctctttcgg tcattacact atattcctat tactattgta acgaacttta
     2221 gctcaaaaac aactaataac agcgcataaa tagatatttt cactattttt tagcacttta
     2281 ccatgattta ctaattcaaa tctcataaaa aaggcaccca ctcgttaaag tggatgcctt
     2341 atcttccatc aatcttctac ttgtggccat tctgtatgga atacgccagg tttgtcgact
     2401 ctttcatacg tatgagcgcc aaagtagtcg cgttgtgctt ggattagatt tgcagataat
     2461 acttctgaac gatagctatc gtagtagcta attgctgcag tgaatgttgg aactggaatt
     2521 ccagctttta ctgcttctgc aacaactgta cgaaggtcgc cttggtagtt atgtgcaata
     2581 tctttgaaat atggatctaa taataagttt ttaagatttt tatctttatt ataagcatca
     2641 gtaatttttt gtaagaaacg agcacggata atacaaccag cgcggaaaat tttcgcaatt
     2701 tcaccgtatt gtaagtccca atcgttttct tcactagctg ctctcatttg tgcaaaacct
     2761 tgtgcataag atgcgatttt gctgaaataa agcgcacgac gaacagattc aacaaatgct
     2821 tttttgtcgc cttcaaaacg ataattagat gggccagata aaacagtact tgcataaacg
     2881 cgttcatctt taagtgcaga gatgtaacga gcaaatacag attctgtaat taaggaaagt
     2941 ggaacaccta agtcgagtgc gctttggcta gtccatttac cagttccttt ttgacctgct
     3001 ttatcaagga taacatcgac aataggtttg ccagtttctt cgtcttttac ttttaggatg
     3061 tttttagtga tctcgattaa atagctatca agttccccgt tgttccattc ttcaaatacg
     3121 tcagcaagtt catcatggct taatccaccg atttctttca aaatagtgta agcttctgcg
     3181 attaattgca tatcgccgta ttcgatacca ttatgcacca ttttaacgta atgtccggca
     3241 ccgtctggac caatataagt cacacaaggt tctccgtctg ctactgcagc aatttcacgt
     3301 aaaataggtg ctacaaggtc atatgccttg cgttgaccac ctggcatgat agaaggacct
     3361 tttagtgcac cttcttctcc gcctgataca ccagttccga tgaagttaaa tccttcttca
     3421 cttagttctt tattacgacg aatcgtatct ttgaagaaag cattaccgcc atcaattaaa
     3481 atatcgcctt cgtttaagaa aggtttaact gcttcaatca tcatatctgt agcatcgcca
     3541 gcttttacca taataaggat acggcgaggc acttcaagag attcgacaaa ttcctctaaa
     3601 ctataagttg gtactaattt tttgtccgca ttttcttcca taactgcttt cgttttttca
     3661 gtcgagcggt taaagataga tactgtatga ccgcggcttt caatgtttag agccaagtta
     3721 cgacccataa cgcccattcc tataacgcca atttcttgtt ttgccatttt gcacttcttc
     3781 ctttccggtt tattaaggca gaaaaatctg tcttacttca acatgacaca taaaagtatc
     3841 aacatcattt actatatcaa agaattgctt cttggacaat gaatcaatcc gaattatttg
     3901 actttttttc actaatttag ttttctgaga agaattttct cgttttttgc ggattctgct
     3961 aagtcaatga cgagttgagt aagtttttct aactgctcaa cagatactgt ttcttcttct
     4021 gtgtgcgcat tttcgtatcc tgctgataag agcatggtcg gaataccttt ttcattcaac
     4081 acatttgcat ctgttccgcc ttctaaaaaa atttctcttg tttctaaaga ttgttttttt
     4141 gcggcttttt gaaaaatatt cattagtgga tgcttagagc gaattcggta cccttcataa
     4201 attaattttg tatcatgcgt caaaagagca ccatatttct cgcaagtttg cgcaaatcgt
     4261 tctctaatgg tctggatatg caaaagcgcc ttacggaaac ttgctgctga tgtaaaaaga
     4321 acttctaatt gggcatcttg ttgattttca tcatttattc caccagaaaa cgactgaatt
     4381 tcccatttgt tttctcggtc aattctgcct ggccgcgtgg catgtaacgc cattctcgct
     4441 atagaaatcg gtgacatttg ggcagcttca gaacttgcaa tagtaaattc taatgcgact
     4501 aacgtatttg cttgtaattg ataatttccg acttcacctg gtgcatctaa acagtatcca
     4561 taagctgccg taattttttc ttccggaaat aaacgcattc caatcatgcc gagttcttct
     4621 ttcgtcgtga aaataaattc aatctcccca tgagctgttc gttctgcaca aaaataatca
     4681 atagccgcta acatagctgc tactgctgct ttatcatccg cacctaaaga agtgccttcc
     4741 tctaccgtaa atacatcttg ctccatttgg aaaactggcg ttgccgcatt tggatgcgta
     4801 tccacatgac tacagaaaaa aatcgttgga aatttctttt tagtagcggg gattcgtgca
     4861 attaagccat aatcttcatc caaactatat tcaatgttta attttgctag atgttttttt
     4921 atatacgtca aaatagctgt ttctttccct gagacagatg gagtttggat taattcggta
     4981 aaatattttt ttacattgga tatcatcatt tttccaccta cattcttcct atttgcttta
     5041 aaaatcaata aatgacttga aatttacttt aattataagt aagatatata tatctgaaat
     5101 gctttatgag aggagttttc ttccgcatga ctaataaaaa agtagttcgc gttgtcgtta
     5161 ttttaatgct aatcgcgatt gtattatcca gtgttttaac cggggtatta atgtttttat
     5221 aaatatccga cgtctgagcc aatttggttc aggctttttt tattttttct caaaaaaaag
     5281 agcagcaccc gaaagtacta cccaagacat ctagggagtt taggggtatg gatctagatg
     5341 tactaaacaa tacccgctaa acctagatta aaacattttt aatacaatgc tgtattttct
     5401 ttggaaatct tttcgacatt ggctttaatt gcttgtaaga atttacctgc tagtaagcca
     5461 tctaaaatac gatgatcgat ggatagacat aggttcacca tatctcgcac ggcaatcata
     5521 tcgtcaataa tgacaggacg tttaacaatc gattccactt gaagaatagc ggcctgaggg
     5581 tggttaataa tccccattga ttgaacagag ccaaatgaac cagtactatt tacagtgaaa
     5641 gtcccacctt ccatatcggc ttggcttagt ttaccattac gcgcttttcc agcaagttcg
     5701 ctaatttcgc gagcaatgcc tttaatagat ttttcgtccg catttttaat aactggaacg
     5761 tacaataaat caccagctgc aatcgcaatc gaaatattga tattcgcgtg ctcgataatt
     5821 ttatcgcctg cccatgtgct gttaagttgc gggaattctt tcaatgcttg tgcaacggct
     5881 ttgatgaaaa aggcgaaata agttaatgaa taaccttctt cttttttaaa gctgtcttta
     5941 actgcattac gatagcgaac aagaccagta gcatccactt ccaccatcat ccaagcatgc
     6001 ggaatttctt gtttactcac gctcatatgt ttagcaatgg cttttcttac gccattgatt
     6061 ggtatttctt tatcaccagc tgcagaacga acaggaggag ttggcattgc tgctttttct
     6121 tgtggagcag acttcatttc ctcgcgtttc gctactggac cattttcaat gacttgaagt
     6181 aaatcttttc ttgtaattcg gccaccttta ccagtgcctt ctacagttga taaatcaata
     6241 ttgttttcac ctgcaatacg cagtacagct ggagaaaatc ttccactagc tggtgcatct
     6301 gctagtttca cttgttttgt ttcttgtttt tctggcgctt ttgtttctgt ttcttctact
     6361 tcagctacag gttccgaact tcctgcatct gctgtttcaa ttgtacaaat aacttcgcct
     6421 acttctagag tttcatcttc ctcggctaaa atttctttga tagtgccact aaaggatgat
     6481 ggaatttcag ctgttacttt atctgttaaa acttccgcga tagcatcata tttttcgacg
     6541 gtatcgcctg gtttaactaa ccatgaacta atcgtacctt ctgtaacact ttcccctaat
     6601 ttgggcatgg tgattttttc aactgccaca ggtcttcact cctttatttt aaaacgggtc
     6661 taaaattccg ctaattcttt cattgcatct gccactttat ctggattgat cataaagtgt
     6721 ttttccatcg taggagcaaa aggcattgct ggcgtatctg gtcctgcgag tcttgcaatc
     6781 ggagcgtcta aatcgaatag acaatgttcc gaaataattg ctgccacttc actaataata
     6841 cttccttgct tattatcttc tgttacaaga agtactttac ctgttttttt cgttgcttca
     6901 ataattgctt cttggtctag tggatagatt gtccgtaaat caagaatgtg ggcttccaca
     6961 ccctcagctg ctaaacgttc tgctgcttgt tgggcaaatt gaaccgcaag tccgtaagta
     7021 attactgtaa tatcatcacc ctcacgaacg acatttgctt cgccgattgg tacgatataa
     7081 tctgtttctg gtacttcgcc tttcagcaaa cgataggcac gtttatgctc aaagaaaagt
     7141 actggatcgt tatcacgaat cgctgctttt aaaagtccct tcgcatcata tggcgaggat
     7201 ggaacaacaa ttttcaaacc tggttgtcca aagaatactt tttcaacaga ttgtgaatgg
     7261 taaagtgctc cgtgtacccc accgccaaaa ggtgcgcgaa taactatcgg acaagaccaa
     7321 tcgttattag aacggtagcg aattctggaa gcttctgaaa taatttggtt gacagcaggc
     7381 ataataaagt ccgcaaattg catttctgca actggacgat agccatacat cgccgctcca
     7441 attcctactc cggcaatagc cgattcagca agtggtgtat cgagtactcg gtcttcacca
     7501 aattcgtcat ataggccagc agtcgcttta aatacgccac cttttttccc aacatcttct
     7561 cctaaaataa atactttatc atcgcgctcc atttcttctt taagcgccat ggttattgca
     7621 tcaatatatg aaatgattgg cattcaaatt ccctcctaat cagctattcg cttcttcatc
     7681 atatacatat agtaaagatg attctggttc agcgtatgct gcactttccg cgtaatcagt
     7741 tgcttcgtta acttctttcg caatactttt ttcgatttca gcgatttttt cttctgttaa
     7801 gtaaccttct tcgagtaatt ctgcttggaa aattttcagt ggatcttttc cttttgcttc
     7861 atctacttct tctctggaac gataactact atcgtcatca tcggaggagt gtggtgtgaa
     7921 gcgataagag actgtctcaa ttaaagtagg tccctcgccg tttcttgcac gatctgctgc
     7981 acgtttaaat gccgcatata cttctcccat attcgttcca tccacacgtt caccagggat
     8041 gccgtaacca attgctcggt cagatagttt ttctgcggca tattgtttcg atgctggaac
     8101 ggaaatagca tattggttat tatgaatcac gaaaacaact ggcaacttat gtacagatgc
     8161 aaagttgatt ccttcgtgga aatcgccttg gttagaagat ccttccccag ttgatgcata
     8221 aatcgcaatt tcgtcaccag ccatttttgc tgcaagacca attcctgctg cgtgcgggaa
     8281 ctgggttgtt acgggtgaac tttgtgtaac gattcggttt gatttttggc caaaatgagc
     8341 tggcatttga cgtccgccag agtttggatc ttccgcttta gcgaacgcgg ataacataat
     8401 atctttcgct gtcatcccga atgctaacac cactgctaaa tcacggtaat atggtaatgc
     8461 ataatcttta tctaaatcaa aggcaaacgc agcgccaatt tgtgccgttt cttgtccttg
     8521 tccagaaatg gtaaaaggaa ttttcccaga acggttcagc aaccacatac gttcatccag
     8581 tcttcttgcc attagcatcg tttcatacat tttaattaat ttatcttctg ttaaacctgc
     8641 ttcttttaaa gtcatttttg ttcctccttt aaagctgtat taaccgtgaa ttgcattgcc
     8701 atccacagca agggcagctt ctctaaaact ttctgataaa gttgggtgcg ggtgaatggt
     8761 gttacccact tcccacggcg ttgcatttaa aacttgtgct aaagcggctt cgctaatcat
     8821 gtccgttacg tgcggtccaa tcatgctaac gcctaggata tcgtctgttt ttttatctgc
     8881 aataatttta atgaagccat ctgactctcc gtaaacgagt gctttcccga taccacggaa
     8941 gaaaaatttg ccttttttca cttcataacc acgttctttt gcttgttctt ctgtaatacc
     9001 gacacttgcg atttctgtag aagtataaat acagcgagga actaagtcgt agtcaagttt
     9061 ttcagccact tttccggcaa tatggttggc tgcaatcgtt ccttcttcca tcgcaacgtg
     9121 cgcaagttgg attgttggaa tgcaatcacc aatcgcgtag atatggcttt cttttgtttg
     9181 ataaaaatca tttacttgga taaaaccgtt ttcggtcgcg atatccgtgt tttgcaaacc
     9241 gatattttct gtattagctg aacgaccgac agaaacgaga attttgtctg ctgcgaaagt
     9301 ttgctcttcg cctttaataa ttgctttaat ttccacacca gtatccgttt ttttataact
     9361 agctgcttga acttcagcag atgtatgcat gattaatttt ttctttttat aaagtcttgc
     9421 taattcttta gctacttctt tatcttctgt tggcaaaatt cgatctgcat attctagcac
     9481 ggtaacttct acgccaaaat catgcatcat cgaagcccat tccatcccga taactccacc
     9541 gccaacgata ataattgatt ttggtaaaga ttctaggttt agcgcaccgt cagatgataa
     9601 aacattttct tcatcaatgc ttaaaccatt taatgtgcgc ggtttggagc ctgtcgcgat
     9661 aattaaattt ttaggaatga gcatttcatt ttcagagcca tcttcaaatt cgactgaaac
     9721 tgttccagct gttggtgaaa aaatagatgg tcctaaaata gttcccgttc caacaaacaa
     9781 gtcaattttc ccttgtttaa ataattggtg aatacctttt tctaattgat ctacgattgc
     9841 ttgttttctt tcttgtgctt gtaaaaaatt gattccggca gttccttcta cagaaatacc
     9901 aaattcactt gcttttttta ctgtttgcag aacttccgct gaacgtaata acgctttcgt
     9961 tggaatacat ccacgatgaa gacacgttcc accaactttc cctttttcaa cgacggctac
    10021 tttctggcca ttcttagctg cttgaattgc tgcgacgtaa ccgccagttc ctccgccaag
    10081 aataacgaca tcatattctg ttgccacatt atctcctcct tttagtactc tttttctttc
    10141 tcaagaccag cgagcacacg ttgcacaccg ctatttaatg cttctaattc gtcttctccg
    10201 ggttctataa tcacactggt tatccagttt gtttgctcaa taattttgtt tgtaaaaagt
    10261 tcacttctag caaggccacc agttaaaatt atggcgtcaa ctttaccttg caatacaacg
    10321 gaacatgcgc caatttcttt gctaacttga taagccattg catcaaaagc ttcgatagct
    10381 ttcacgtcac ctgcttgtac tttagcttcc acctcgagca tgctgttagt tcctaaatat
    10441 gaaatcatcc caccacgacc aacaatcagt tcatgcaatt cgcgttttgt ccatttaccg
    10501 ctaaaacatg cttctagaaa atcattcatc ggtaaagaac cagaacgttc cggactaaaa
    10561 gggccgtccc catctaaggc attattcaca tccaccgctt ttccttgtcg atgagcggca
    10621 actgaaattc caccgccaag atgcgcgata acaaaattca ttttttcata atcttttcct
    10681 agctctttgg ctattttccg acctgctgct ttatgattta atgcatgaaa aatacttttt
    10741 ctagtaatga aggcattgcc agatatcctt gcaatttcct gcatttcatc cacgacaacc
    10801 ggatccacaa taaaactagg tattgtcagt tcatctgcta atttttttgc aagcagtgcc
    10861 cctaaatttg aggcatgctc tccgtattta ttttctttta aatcatctat cattttttct
    10921 gtaaccatat atgtaccgcc ggcaactggt cgaagtaagc cccctcttcc aactaccgct
    10981 tgtaatttct ttacatcata accatgtgca tccatcactc gacgtagaac ttgccaccta
    11041 aaatcaaatt gttcctgtac gttattaaag tcggctagtt cttgcattgt atgtctgaca
    11101 gtttcttcaa aaagtacttt atcgccttgg taaacagcga gtttggtaga cgtggaacca
    11161 ggatttatgg ttaaaacatc aaaagacatt tgctttcctc caaatttaat tgtgaaaaat
    11221 gcggtaggtt atcattttcc catggactat tgtaacacgt aggctgtaat caaataaaag
    11281 cctttgcatt cagattgtta aagtccgtct attcacatta tttcatcatt tctcaactag
    11341 tcttacagtt agtatgaatg aagctaattt gttttccggt gaatcatttc ttgaggaaat
    11401 gacaataggt acttttgccc cgaccactgc actacctact ttagctccag caaagtagac
    11461 taatgattta taaagtgcat ttcctgtttc aatattagga gcaattaata tgtctgcttc
    11521 tcccgctgaa ctatccgtaa ttcctttatg gagagccgct tctttggaaa tagctacatc
    11581 gagagctagc ggacccgaga cggctattgt gttatcaaaa tgctgcacta cttcctgtgc
    11641 ttctactgtg gatggcattt ttgctgtcac ttcttccacc gcactaagta acgcaatttt
    11701 aggattagcg atgccgattt gatgcgctac ggctatggca ttttctgtga tagcaatttt
    11761 ctcttttgtt tttggcgcta cgttcatggc acaatcagtt atcaataatg gtttgtgata
    11821 cgttggaata tcaaaaatgg caatttgact caataattgg tctgtacgaa ggccattttc
    11881 tttttttaat acgtgatgca tcaatgtggc ggttggaatg aatcctttta ctaaaatatc
    11941 tgcttcttta ttttttaccg ctaaaatggc gccttgtgct gcggcttcag cggtatctgt
    12001 ttgaatccat gtaacgtttt cattcgcggt taacgttttg tcttccttct tgccaaataa
    12061 aagaaattta cctaaatttt ggtttaatgc aagacgaatc gtttcgagca caacttcatc
    12121 atctgctcct gccacggcga aaacaaatga actcgtttct gctacatctg aaaaaaatct
    12181 actttttgtc ataaaaataa ctcctttatc gcacaaaaaa gccgcattcc gaattagtag
    12241 ttgtttttat gaccaggtaa taattttcta ccttattcat tttaagcaaa aactattcga
    12301 tatgcaagca atttcgtttt tttaatacgt ttgttttact ttttccgctt gttcaatcat
    12361 ttcttttgca tgttgtttgg ttaattcggt gacttctatt ccagcaatca ttcgactgat
    12421 ttcttctact ttctcttccc ctttaagcac tgtaacggaa gttgttgtcc gtttgttttg
    12481 gacttttttc gtaatgtagt agtgatggtt cgccattgct gcaacttgag gtaagtgact
    12541 aatgcatagt acttgcgagc caactgaaac agcataaatt ttttctgcaa tcgcttgacc
    12601 aacgcgacca cttacaccag tatctacttc atcgaaaata atcgaggtga taccttggtg
    12661 cctagaaaaa atggttttta atgctaacat cattctagat aactctccac cagaagcgat
    12721 ttttgctaat ggttttaaag gttcacccgg gtttgttgac atatagaaaa cgacgctatc
    12781 ttgccctgaa tctgttagtt ccattttgtt tgcttcgaag cgtacactaa aaatggcttt
    12841 ctccatatat aagtgattta attcttgttt gatttgtttt tctaatgtaa cagccgcttt
    12901 tttacggatt tccgttagtg tatttgcttg ttttgttagt tctgctttaa gtgttgctaa
    12961 tttggtctct aaatgcccga catgtgattc actatctgtc agtttttcca tttcgctgct
    13021 tatttcttgt tcgtattgaa tgatatcttc aattgtttta ccatatttgc gttttaattg
    13081 gtttaaatca ttcaaacgtg attcaatttg attcagttct tctggttgga attcgagctg
    13141 atctagtgat tgcctaattt ggctcatgct atcttctaac atatagtaac tagaagaaat
    13201 ggcctcacta accgctttat aatccgtatg aatactcgcc gctgcctcca tttgacgcat
    13261 tgcttctcca acaaattcca gcccaccagg ctcaccttga atcgcggcat aagctccttg
    13321 taaattttcg ttaagttttt caaaattggc taagatattt ttttgttcta acaagcgatc
    13381 ttcttcacca gcttgcaaat tggcattttc aatttcctgt tgttgaaaac ggagcatatc
    13441 cagacgttgc gctaattccc gctcattttt cgtccaattt tgccactctt tctcgattgt
    13501 ttgatattct ttgaaattag tttggtactt
//
LOCUS       DABQVC010000065        13465 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.065,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000065 DABQVC010000000
VERSION     DABQVC010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13465
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.065"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..850)
                     /locus_tag="IBJ56_001331"
     CDS             complement(<1..850)
                     /locus_tag="IBJ56_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HAM3417589.1"
                     /translation="MTEEKGILLQSGTNELEIVTFTVGENLFCINVLKVKEIIHPLEV
                     TPVPDSNPAIEGVSQVRGEIMPVVNLARVMKLPEIEPENTKFIITELNQMKIVFRVDE
                     VHRIQRISWEQIEEPEKLSIGLEELAVGIVKLDGNLVLLLDYEKIIYEISGNADFAVT
                     GEDRMARKVNREEKTIFIAEDSQMLRQLLEDTLHEAGYTNLQFFANGREAQEHIFKLL
                     KEQKEQTFENVNLLITDIEMPQMDGHHLTKVIKEDEIGRELPVVIFSSLITEDLEHKG
                     AGVGADA"
     gene            complement(863..2776)
                     /locus_tag="IBJ56_001332"
     CDS             complement(863..2776)
                     /locus_tag="IBJ56_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HAM3417590.1"
                     /translation="MRPLISICMIVKNEAHILRQSLASFRKFTEEIIIVDTGSTDETK
                     EIAQEFTDFVYDFEWTGNFSDARNFAAKHATGKWILAIDADECLEEESYRKLEKQLKS
                     PIEPIQMAQIISFTGEKGRVTTTNQMARVYKNDGTICFRGVIHEQLEAVDKHPIAAGV
                     AEVKIYHYGYMTEIVEKQDKSDRNLRLLEKEVKNNKNSGFVHFNIGQEMNRLGNKKEA
                     LKEFSEAFRLRDHNHYIWAKLSAYHIAELLEQEKRYDESLAIIEEARIIWPNVPEFPL
                     KKANILYVNHQLEDAKEIYQSLLENTAIDYQSIVLYEATNFMPHKMLGTIYLEEKDYT
                     RAMTHFSKAYAENSSDYGVMFQMIMLLSKFHQPKEIFAFMERHHFISSTETGLRLLSM
                     TTQQGYAELSELIVQSLTDVYPPVAEATEVKIATIRNVFPVISESAILFGIKEELIDA
                     ADLCLWHYENPQLPIENVMKNSDVGDIYDFIFENGPRISKKRYLFVLERAIALGKGEF
                     ADYLLALRNVYHDSINSHIADLFFQYDFADIALDFYNIVDADEVTKQGYINLINYLVD
                     AEVLDEALAIAERGIDNFSTDFRFYLWTIKIDTENRANRISEAMDEFPNNRYLAKLLD
                     EVTMLQDTVTNNR"
     gene            complement(2799..3299)
                     /locus_tag="IBJ56_001333"
     CDS             complement(2799..3299)
                     /locus_tag="IBJ56_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417591.1"
                     /translation="MQLFLSGSHTLTDYDKQEIQAYLEKFAPVNHIHLLCYKSIENEV
                     LQFFLKKEHLAPRLSIYTFAPKECLPEPFLSTIDYLECLGSSYQSFGYFDTVITKPTY
                     EKFLAQIVSKMDLVCCFYNGDKPTDVIPVDVAKSFDVQSMIYDLPKAKKHLLHRASSD
                     KIKLVN"
     gene            complement(3309..4136)
                     /gene="motB"
                     /locus_tag="IBJ56_001334"
     CDS             complement(3309..4136)
                     /gene="motB"
                     /locus_tag="IBJ56_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HAM3417592.1"
                     /translation="MAKRRKKPQEEHVDETWLIPYSDLLTLLLALFIVLFASSSVDAK
                     KFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEATEQEKAK
                     KAAAALLKKQNEEKIEAFKKQIDSYIAAEHLGAKMTTKYSDEGLLITIRDDILFQSGS
                     AELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWELSVARAVNFM
                     EAIIQENSEVNPGEFSARGYGEFRPVAKNDIAANREKNRRVEIMVRPINRDTLDEDE"
     gene            complement(4096..4947)
                     /gene="motA"
                     /locus_tag="IBJ56_001335"
     CDS             complement(4096..4947)
                     /gene="motA"
                     /locus_tag="IBJ56_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HAM3417593.1"
                     /translation="MEITTIIGLVLAVIVIAGSFMIQNISLAMLFSAEALIVIILGTI
                     TAVMMAHPWSDVKVVPKLFKILFTKEKMPDKVEVLVQYKEYADEIRRSGVLALEDSVD
                     EIEDPFMKRGMRLVVDGQSSPEFLRDVLEEEVASMEERHAAYAKIFASAGAYAPTLGV
                     LGAAMGLIHAMGEMSNPDKLSEAIAAAFVCTIFGIFTGYVLWTPFANKLKVKSQKEVH
                     LRYMMIEGVVALQERNAPRVVEERLLSFLSPKEKDVLRNGKGKKTREVEEIERGQASQ
                     ETAGGTR"
     gene            complement(4974..5309)
                     /locus_tag="IBJ56_001336"
     CDS             complement(4974..5309)
                     /locus_tag="IBJ56_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3964 domain-containing protein"
                     /protein_id="HAM3417594.1"
                     /translation="MGRIENIKNLAFFEDKPGLAEQILMLEKKTQLFLPNEFEIRQTV
                     GYEIGDKEVILGRLESFYFLALKGVGEDNYRSQAFASEADAKAFFVHLPEMENELVAF
                     WLNEVELVR"
     gene            complement(5334..6122)
                     /locus_tag="IBJ56_001337"
     CDS             complement(5334..6122)
                     /locus_tag="IBJ56_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HAM3417595.1"
                     /translation="MIPDLEKDYLYFTRVVKRDLGLDLALYKETQMKRRILSFIVKKQ
                     YITFGEFFKHLKKDAVLLDEFISLITINVSSFFRNRNRWDALEKQVLPRLLEDSRGKL
                     RVWSAACSSGEEPYSLAMMMERSVGTRHYDILATDLEPAILKRAVIGEYQSRQMEELT
                     EQERHTAFVEKGDTYQILPKYRKSIRFRRHDLLTDYYEKGFDLIVCRNVLIYFTAEGK
                     HQAYQKFAESLRRGGVLFIGGSEQILNPADYGLATLNNFFYIKT"
     gene            complement(6151..6930)
                     /gene="flgG"
                     /locus_tag="IBJ56_001338"
     CDS             complement(6151..6930)
                     /gene="flgG"
                     /locus_tag="IBJ56_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HAM3417596.1"
                     /translation="MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVIS
                     RNKVNYQNGPVARQVGTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNF
                     FITAKNGEISLSRGGQFHSDQFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLY
                     NAETGQYLGRLGTKFVSANQADSLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSN
                     VDLGVEMVQLMDNQRMVQASKNVVNMFDKVYDKEATGLIRQ"
     gene            complement(6927..8150)
                     /gene="flhF"
                     /locus_tag="IBJ56_001339"
     CDS             complement(6927..8150)
                     /gene="flhF"
                     /locus_tag="IBJ56_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HAM3417597.1"
                     /translation="MGKHLVEKMEIFKANSKREIHKKIRLVTNEPYKITDERVTKLGI
                     FKKQYEVTAVIMSEVAIADGRMDFQETFQKSVVKNRPKTDDLLKKEKLLEMLAAGAEL
                     AQSTPLLEERKTQEEELSAMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTY
                     VADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVG
                     KTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA
                     VQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMT
                     ILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRW
                     LAERFVGTDRRRVLE"
     gene            complement(8172..10247)
                     /gene="flhA"
                     /locus_tag="IBJ56_001340"
     CDS             complement(8172..10247)
                     /gene="flhA"
                     /locus_tag="IBJ56_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhA"
                     /protein_id="HAM3417598.1"
                     /translation="MGNLGAIKKYFAILIAVSFVIALIVPLPPFVLDLVLVTILAFSV
                     LVYMRATSIKDWNELKSFPSLLLLMGIFRVSINISTTRAILTTGDPGQVIKQFGNFVI
                     GSNFVVGIVIFIILIVFQFIVANGSSRTAEVAARFTLDALPGKQMAIDADLNQRLITE
                     PEAKEKRAYLNMETEFYGAMDGAGKFVKGDVLFTVLLAVVNIVFGLIVGMVQGGLSFG
                     EAAVKYTELTIGDGIVSQIGSLLMAMSAGVIVTRVFDGSDDNVAVGIFKELMQNSVVV
                     YTLAAMFILMGVFSPLPTIPFVGIGVVLGIIGYRTQFNLKKKEQLELEKEMELIQSET
                     SSAEAEHNQAFGAAREKFPVVVELGLNIAALVKQKMNGETAKDKVVLMRKSILQDLGI
                     GVPGINFKDNTSFQPRGKYEIKVKGVAVASGVLKAGHLLALKTPGVMMDLDAEPTKDP
                     IFGEDGYWILPGELEDAQMKNYQVLEPLSILITHLDVVLRKNLHELLMRQQIKDLIDG
                     LADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISVRDLPTIVEGIIDGQTIYPNDLD
                     GITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDTEIVNTPYYGYALNWALDKEL
                     PIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERYQLDVPVLSISELSPETEV
                     EQIALIEPT"
     gene            complement(10294..11340)
                     /gene="flhB"
                     /locus_tag="IBJ56_001341"
     CDS             complement(10294..11340)
                     /gene="flhB"
                     /locus_tag="IBJ56_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
                     /protein_id="HAM3417599.1"
                     /translation="MAKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLY
                     FFGEMFIKNTIQAFVALLKQPPKLANMESYSLFYLMEFGKVLMPIMVMVVIFGLMNYG
                     VQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDH
                     LDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQ
                     EIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTK
                     DHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI
                     EVMKELMDADKIKF"
     gene            complement(11356..12117)
                     /gene="fliR"
                     /locus_tag="IBJ56_001342"
     CDS             complement(11356..12117)
                     /gene="fliR"
                     /locus_tag="IBJ56_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HAM3417600.1"
                     /translation="MEFEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAIS
                     IPVATGVDVSGITTLPDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQ
                     VNLIDPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGF
                     IDLLLGTLGFALASAVSIALPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGI
                     FILACAVPILSTVFKNLTDEMIQQYVSFFDYLLKK"
     gene            complement(12120..12392)
                     /locus_tag="IBJ56_001343"
     CDS             complement(12120..12392)
                     /locus_tag="IBJ56_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliQ"
                     /protein_id="HAM3417601.1"
                     /translation="MNLTPITQIFQDFFYSGLALILPVSLICIVVVIVVAILMAMMQI
                     QDQSLTFLPKIVAFVVALFILGPWMFEHMTDLFVGIFSKLPLMIRV"
     gene            complement(12405..13172)
                     /locus_tag="IBJ56_001344"
     CDS             complement(12405..13172)
                     /locus_tag="IBJ56_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein flip"
                     /protein_id="HAM3417602.1"
                     /translation="MRKIASRRVFQVSFIVIFAISLVVFWPGVNVHAESWLDSLGVNG
                     TDGVNSSVALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGL
                     ALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWDETKPLLTKYVAENTYKHDINMM
                     LKAEGEDPVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLG
                     MMMVPPMTISLPFKILVFIFIGGYGLITNMIFQTIHF"
     gene            complement(13165..>13465)
                     /locus_tag="IBJ56_001345"
     CDS             complement(13165..>13465)
                     /locus_tag="IBJ56_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HAM3417603.1"
                     /translation="SLLKIIVLLAVLAGISYFLVKKNKQANRTRKSENDLIKLKDTLL
                     ISHQLRAVLLEADGEKVLAIISNNDIRTVSLKGKTDQNEALFRELLLKEETKENA"
BASE COUNT         3849 a         3151 c         2251 g         4214 t
ORIGIN      
        1 gcgcatcggc tccaacacct gcgcctttat gttccagatc ttctgtaatt aacgaagaga
       61 aaataacaac tggcaattca cggccaattt catcttcttt gattactttt gttaaatgat
      121 gtccgtccat ttgcggcatt tcaatatcgg tgattaataa gttaacattt tcaaacgttt
      181 gttctttttg ttctttgagc aatttgaaaa tatgctcttg tgcttcgcga ccatttgcaa
      241 agaactgcag atttgtataa ccggcctcat gaagcgtatc ttcaagcagt tggcgcagca
      301 tttgtgagtc ctcggcaata aaaatcgtct tctcttcacg atttactttt cgcgccatac
      361 ggtcttcacc tgtgacagca aaatcagcat ttccgctaat ttcgtaaata attttttcat
      421 aatctaataa gagtactaag ttgccgtcta attttacgat accgactgct aattcttcta
      481 aaccaatcga tagtttttct ggttcttcaa tttgttccca cgaaatacgt tggatacgat
      541 gaacctcatc gacacggaaa acgattttca tttggtttag ttctgtgata atgaatttcg
      601 tgttttctgg ctcaatttct ggcaatttca tcacacgggc aaggttcaca actggcatga
      661 tttcgccgcg aacttgggaa acgccttcaa ttgccgggtt cgaatctggt acaggagtta
      721 cttcgagcgg atgaataatt tctttcactt ttaaaacgtt aatacaaaat aagttttcgc
      781 caacagtaaa tgtaacaatt tccaattcat ttgttccact ttgtagtaaa attccttttt
      841 cttctgtcat attactggcc tcctatcgat tgtttgtaac agtgtcttga agcatggtca
      901 cttcatccaa cagttttgct aaatagcggt tattcggaaa ttcgtccatt gcctcactaa
      961 ttcgattcgc gcgattttcg gtatcaattt tgattgtcca aaggtaaaag cggaaatcag
     1021 tactaaaatt atcaatgcca cgttctgcaa tcgcaagtgc ctcatccagt acttcggcat
     1081 ctactaaata attaattagg ttgatatagc cttgtttggt cacttcgtct gcgtcaacga
     1141 tattgtagaa atcgagcgcg atatccgcaa aatcatattg gaaaaataaa tctgcaatgt
     1201 ggctattaat gctgtcatga taaacgttac gaagtgccaa taagtaatca gcaaactcgc
     1261 cttttccaag tgcaatcgcc cgctctaata caaataaata acgtttcttg ctaattcgtg
     1321 gaccgttttc aaagataaaa tcataaatgt cgccaacatc gctatttttc atgacatttt
     1381 cgattggtaa ttgcggattt tcatagtgcc acaaacataa gtcagctgca tcaatcaact
     1441 cttctttaat accgaataaa atagcagatt cgctaattac cgggaagacg ttgcggatcg
     1501 ttgcaatctt cacctctgtt gcttctgcga caggtggata cacatcagtt agcgattgaa
     1561 caattagttc agataattct gcgtagcctt gttgggttgt catcgaaagt aagcgcaaac
     1621 cagtttctgt gctagagata aagtgatgac gttccataaa ggcaaaaatt tcttttggtt
     1681 ggtggaattt gctaagcagc ataatcattt ggaacatcac accgtaatca gaactatttt
     1741 ccgcataggc tttagaaaaa tgagtcatcg cgcgcgtata atctttttct tctaagtaaa
     1801 tcgttccgag cattttgtgt ggcatgaaat tggttgcttc gtaaagcacg attgattggt
     1861 agtcaattgc tgtattttct agcagacttt gataaatttc tttcgcatct tcgagttggt
     1921 gattcacata taaaatatta gcttttttta gtgggaactc tggtacgttt ggccaaatga
     1981 ttcttgcttc ttcgataatg gccaagcttt catcatagcg tttttcttgt tcgagtagtt
     2041 cggcaatatg ataagcactt agtttcgccc aaatgtagtg attgtggtca cgtagtcgga
     2101 acgcttcgga aaattctttc agcgcttcct tcttattacc aagtcggttc atttcttgcc
     2161 caatgttaaa atgtacaaat ccgctatttt tattattttt tacttctttt tctaataaac
     2221 gtaaattacg gtctgatttg tcttgttttt cgacaatctc cgtcatatag ccataatgat
     2281 aaatttttac ttcagcaacc ccagctgcaa tcgggtgttt gtctaccgct tctagttgtt
     2341 catgaatgac gccacggaaa caaatcgtcc cgtcattttt ataaacccgc gccatttggt
     2401 tcgttgttgt cactcgccct ttttcccctg taaagctaat aatttgcgcc atttgaattg
     2461 gttcgattgg tgattttaac tgtttttcta atttgcgata actttcttct tccaaacatt
     2521 cgtctgcatc aatcgctaaa atccatttgc ccgttgcatg tttggccgca aagtttcttg
     2581 catcagaaaa gttgccagtc cattcaaagt catagacaaa atcagtgaat tcttgtgcaa
     2641 tttccttggt ttcgtcagtg gaacctgtat ctacaataat gatttcttct gtaaattttc
     2701 taaaagacgc taaactttgt cgtaaaatat gtgcttcatt tttgactatc atacaaatcg
     2761 aaattaacgg ccgcatgaat cttccctctt tctatcaatt aattcactaa ttttatttta
     2821 tcgctgctcg ctcggtgcag tagatgtttt ttcgcttttg gcaaatcata aatcatactt
     2881 tgcacatcga acgatttcgc gacatcgact ggtatcacat cagtcggctt atccccgtta
     2941 taaaaacaac aaaccaaatc cattttacta acaatttgtg ctaagaattt ctcataagtc
     3001 ggcttagtaa tcaccgtatc aaaataacca aatgactgat agctactgcc tagacattcc
     3061 agatagtcta tcgtcgataa aaacggctct ggcaaacatt ctttcggtgc aaaagtgtaa
     3121 atcgatagtc gcggtgccag atgctctttt ttcaagaaaa attgtaacac ttcattttca
     3181 atcgacttat aacaaagcaa gtgaatgtgg ttcactggtg caaatttttc gaggtatgct
     3241 tgtatttctt gtttgtcata gtcggttaac gtatgcgaac cacttaaaaa aagttgcaaa
     3301 cacttcacct actcatcttc atctagcgta tcgcgattaa ttgggcgtac catgatttct
     3361 acacgccgat ttttttcgcg atttgctgcg atatcatttt tggcgacagg tctgaattct
     3421 ccgtagccgc gagcactgaa ctcgcctggg tttacttcgc tattttcttg aatgattgct
     3481 tccatgaaat taacggcgcg cgcgacactt aattcccagt tggaagagta aattgaggtg
     3541 cttattggca cattatcggt atgtccagaa acaatccctt ccatcgttcc ttttccttgc
     3601 gcaaaaagtt cgccgatttc tttggcaatc tcgcgttttc ctgcagttaa ttctgcactt
     3661 cccgactgga ataaaatatc atcacggata gttatcaaaa gcccttcatc cgagtatttc
     3721 gttgtcattt ttgctcccaa atgttctgct gcaatataac tatcaatttg ttttttaaag
     3781 gcttcaatct tttcttcgtt ttgcttttta agtaaggccg ctgctgcttt tttggctttc
     3841 tcttgttcgg ttgcttcttt ctttttatct tgctcttcca tcgccttcaa gactgcattc
     3901 acattaggat catctggtcc tttttctttg gatacatatg cttgattgcc tgccgcgcct
     3961 tcctctacaa ttttcttaaa tgcatttccc atttgttcaa acttcttagc atcaacggaa
     4021 ctggaggcaa acagaacgat gaatagcgca agtaaaagtg tcagcaaatc actatatgga
     4081 attaaccacg tttcatcaac gtgttcctcc tgcggtttct tgcgacgctt ggccacgctc
     4141 aatttcctcc acttctctcg ttttcttccc ttttccattt cgcagcacat ctttctcttt
     4201 tggacttaaa aaagataata aacgttcttc cacaacccgt ggtgcatttc gctcttgaag
     4261 cgcgacgact ccctcaatca tcatatatct caaatgcact tctttttgtg atttcacttt
     4321 taatttattg gcaaatggcg tccaaagtac gtaaccggta aaaataccga aaatcgtaca
     4381 aacaaacgcc gcggctattg cttcgctaag tttgtccggg ttcgacattt cccccatcgc
     4441 atgaatgagt cccatcgctg ctccgagtac accaagcgtc ggcgcatatg ctccagctga
     4501 tgcaaaaatc ttcgcataag cagcatggcg ttcttccata ctcgctactt cttcttccaa
     4561 aacgtcccgt aaaaattctg gggaagactg cccatctaca actaagcgca tccctcgttt
     4621 cataaatgga tcttcaattt catcgacaga atcttccagc gcaagtaccc cgctacgcct
     4681 aatttcgtct gcgtattctt tgtattgcac aagtacttcc actttgtctg gcatcttctc
     4741 ttttgtgaaa agaattttaa aaagtttcgg tactactttt acatcactcc atgggtgcgc
     4801 catcataaca gccgtaattg tcccaagaat gatgacaatt aaagcttcag cgctaaataa
     4861 catcgccagt gatatatttt gaatcatgaa cgaacctgca atgactatca ctgccaacac
     4921 aagtcctata atcgttgtta tttccacgtt acttcatctc ccacctactt atttcagcga
     4981 actaattcca cttcatttaa ccaaaaggca actaactcgt tttccatttc tggtaaatga
     5041 acgaaaaacg ctttagcatc cgcttcactg gcaaatgctt gcgagcggta gttatcttct
     5101 cccacacctt ttaaagcgag aaaataaaat gactcgagtc ggcctagaat aacttcttta
     5161 tccccgattt catagccaac tgtttgtcta atttcaaatt catttggtaa gaaaagttgt
     5221 gttttctttt caagcatgag aatttgttct gcgagtccag gtttgtcctc aaaaaacgct
     5281 aaatttttaa tgttttctat tcgtcccatc taaccaactc catttctttt ttgctaggtt
     5341 tttatgtaga aaaaattatt taatgtggca agcccgtaat cagctgggtt caaaatctgt
     5401 tctgacccgc cgatgaaaag aacgccgcca cgtcttagtg actctgcaaa cttctgatat
     5461 gcttggtgtt ttccttctgc tgtgaaataa atcaacacat tacggcaaac aattaaatca
     5521 aaaccttttt cgtaataatc ggtcagcaaa tcgtgccgtc taaaacgaat cgactttcga
     5581 tatttaggca aaatctgata tgtatcccct ttttcaacaa atgccgtatg acgttcttgt
     5641 tcggttagtt cttccatttg acggctttga tattctccaa tgaccgcgcg ttttaaaata
     5701 gctggttcga ggtctgtggc taaaatatca taatgccttg tgccaactga acgttccatc
     5761 atcatcgcta gcgagtaagg ttcctcccct gatgaacaag ccgcactcca aacccgaagc
     5821 ttcccgcgac tatcttcaag caaccttgga agtacttgtt tttccagcgc atcccagcga
     5881 ttgcgattac ggaaaaacga cgaaacatta atcgtaatca aactaatgaa ctcatctaaa
     5941 agaacggcat cttttttgag atgtttgaaa aattctccaa atgtaatata ttgcttcttc
     6001 acgataaaag ataaaattcg acgtttcatt tgcgtttctt tataaagcgc taaatctaaa
     6061 cctaagtccc ttttgacgac acgagtaaag taaagataat ccttttccaa atctggaatc
     6121 attctttttc ccctccccct agctaggtcg ttactgacga attaatccag ttgcttcttt
     6181 gtcgtacact ttatcaaaca tattaacgac attttttgaa gcttgtacca tgcgctggtt
     6241 atccatgagt tgtaccattt ctacgcctaa atcaacatta gacgtttcga taactccatt
     6301 ttggataatc ccttgtccag ctggtaaatt cattgtgttt atgccattta catgaagtct
     6361 accttcgccg tctttcacca aactatctgc ttgattagcg gaaacaaatt tggttccaag
     6421 gcggcccaag tattgacctg tttccgcatt gtataaatca ccatttgctt cggcgcgaat
     6481 cgacgttttt tgccccactt gaatcgcttc cccagtcgca ctgagtaaat tggcgccatc
     6541 tgctgtccgc agaaaaccaa actgatcgga gtgaaactgc ccgccacgtg aaagtgaaat
     6601 ttcgccattt ttagcagtga tgaaaaaatt acttccttgc gtaggatccg tgtcttgcat
     6661 aaagaaatct cggtcgcggt tcgtaatata gcttgatccc gctgtcaaat taatatgcgt
     6721 cgcagcaggt cgaacaccgt aatcaattgt cccaacttgc ctagcgacag gcccattttg
     6781 atagttcact ttgtttcgcg aaatcacttc actcgtaagc tgatcaaatt tgaatcctgg
     6841 cgtctgcgcg ttagccacgt tattagaatg aacttgaata tgttgcatgt agttcatcat
     6901 ccctgctgcg ccaatgtata accccttcat tccagcaccc gccttctatc tgtcccaaca
     6961 aaccgctccg ctaaccaacg actttttggt ctgaaaatat tttccgtaat attttgtcca
     7021 tctgtcatgt ataacaccgg caaatttgtt tcttgcatca ccgtgtataa atcaccaata
     7081 cgcgtcgttt catccatttt tgtaatgata aaaccatcga ttggaatttc tgctagtttt
     7141 ggtaaaatcg tcatcacatc cgcacttttc attccagaag aaaatgtaaa acacgttaag
     7201 tccggatgaa caacatcggt ataggcagaa atttcactca ctgattcctc ggctaagtaa
     7261 tttctcccaa ccgtatcaat caaaatatga tccacgcagt taacatacgt catatactgc
     7321 acagcttctt ctagttcagc cgggctcgtc gcaacgataa gctccacatc gagtttgtcc
     7381 gcataacctt ggaactgctc cactgcgcct gaccgaaaag tatctgtagt gataaagccc
     7441 actgtccgat tttgctttaa cagctgccat ccaagtttca caagcgtggt cgttttccca
     7501 acacccgttt gcccaatcaa ggaaataatt cggtggttgc ttaaatcaaa cgaatcttcc
     7561 accgctaatt ttccggataa ataaggaacg aaccaatctg taatatcatc caaatgcgcc
     7621 gtttctactt gcttaaactg cttccgccca gcctgcatga agtccgccac atacgtatca
     7681 ctaattccgc gacccttcaa aaacttcacg aaatcactgt tttgttcacg ctcctcgcgc
     7741 attttcactg caagctcgcg gtttaaagcc gctagttcga gacgcatcgc tgacaattct
     7801 tcttcctgtg tttttcgttc ttctaaaagc ggcgttgact gtgctagttc cgctcccgca
     7861 gcaagcattt ctagtaattt ttcttttttt aataagtcgt ctgttttcgg tctgtttttg
     7921 acaaccgatt tttgaaatgt ttcttgaaag tccattcgac catctgctat cgccacttca
     7981 ctcataatga ccgccgtcac ttcatactgt ttcttaaaaa taccaagctt tgtgacacgt
     8041 tcatccgtaa ttttatatgg ctcattcgtg actaagcgaa tttttttatg tatttctcgc
     8101 ttggagttcg ccttaaaaat ttccatcttt tctactaaat gttttcccat ttctacggat
     8161 tacctccctc atcaagttgg ttcaatcagt gcaatttgct ccacttctgt ttccggcgac
     8221 agttcactaa tggagagcac cggcacgtcc aattgatatc tttccaaaac tcgcacaaag
     8281 ccaaatcgaa aatcttttcg ccttgttaaa atgacaggtt cacgaccagt gagttgcgct
     8341 ttattcacgg tatctcttac tttttgaatg attggcagtt ccttgtcgag cgcccagttc
     8401 agcgcgtagc cataatacgg cgtgttgaca atttctgtat ccatttcaat cgaatcttgc
     8461 aaaagtagcg cgtaaatttt gccatcttga tttttcgctt gttcacaaat gactttcgaa
     8521 atccgctccc tgacaaatgc cgtaatgcca tcaagatcat tcggataaat cgtttgccca
     8581 tcaataatcc cttcgacaat cgttggtaaa tcgcgaaccg aaatcccttc tttcaagagt
     8641 tgtcgaagca ccccttgaat tagcgaataa tcaatttctt ttttcttaat ttcatcaatt
     8701 aaaatttgat tttcatcagc aagtccgtca attaaatctt taatttgttg gcgcatcaga
     8761 agctcatgca agttcttccg cagcacaaca tccaaatgcg taattaaaat actaagcggt
     8821 tcgagcactt gatagttttt catctgcgca tcttctaact cacccggcaa aatccagtaa
     8881 ccatcttccc cgaaaatcgg atccttggtc ggctccgcat caaggtccat catcacgcct
     8941 ggtgttttta gcgctaataa atgtcctgcc tttaaaaccc cgctcgcaac agccacacct
     9001 ttgaccttaa tctcatattt cccgcgcggc tgaaaactcg tattatcttt aaaattaatc
     9061 cccgggaccc caatacctaa atcttgtaaa attgattttc gcattaagac gactttatct
     9121 tttgccgttt ctccgttcat tttttgtttc acgagagccg caatgtttaa gccaagttcc
     9181 acaactacag ggaatttttc tcgtgctgcg ccaaatgctt gattgtgttc cgcttcagca
     9241 gagctggttt ccgactggat aagctccatt tctttttcaa gttccaattg ctcttttttc
     9301 tttaaattga attgcgtacg atagccgatt attccaagca ctacgccaat tccaacaaat
     9361 ggaatcgttg gtagtgggct aaatacaccc attaagataa acatggcagc gagcgtataa
     9421 acgaccaccg agttttgcat taattctttg aaaatcccga ccgcaacgtt atcatctgat
     9481 ccgtcaaata cccgagttac aataacccca gctgacatcg ccattaaaag tgaaccaatc
     9541 tggctcacga tgccatcccc gattgttaac tccgtatatt tcaccgcagc ttccccgaac
     9601 gaaagcccac cttggaccat accgacaatt aaaccgaata caatatttac aactgcaagc
     9661 aaaacggtaa aaagaacatc cccttttaca aatttcccag ctccgtccat cgctccgtag
     9721 aattcggttt ccatattcaa atatgcgcgt ttttctttcg cttccggctc tgtaatcaac
     9781 cgttgattca aatccgcatc aatcgccatt tgtttaccgg gcaaagcatc cagcgtaaat
     9841 cttgctgcta cctccgctgt ccgcgaagaa ccatttgcca caataaactg aaagacgatt
     9901 aaaataatga aaataacaat cccaacaaca aaattactac caataacaaa attcccaaat
     9961 tgtttaatta cttgtcctgg atcaccagta gttaagatcg cccgtgtcgt cgaaatattt
    10021 atcgaaaccc gaaatatccc catcaaaagt agtaaagacg gaaatgactt taattcattc
    10081 caatctttaa ttgatgtggc acgcatgtaa actaacacag agaacgccaa gatcgtcaca
    10141 agcactaaat ccaatacaaa cggaggtaat ggcacaataa gtgcaataac aaacgagacc
    10201 gcaatcaaga tagcaaaata tttttttata gcacctaaat tccccatttt gaaacctgcc
    10261 ttttctaaga ttagaaaggt cgctcatatg ttgttagaac ttgattttgt ctgcgtccat
    10321 caattctttc atcacttcaa taacatcttt atataaatct tcttgtatgt attcatctgg
    10381 attcgtcgta tagtaaatac ttcgtgccag ttgtctattt gtaatcatcg gcaccccgtc
    10441 cgtatccgcc acctgacgaa taaacagtgc cagctcgtct tcccctttaa cgagcaattt
    10501 cggtgcatga tcttttgttt tgtcataacg catcacaacg gaaatatgtg tcgggttgtt
    10561 caccacaaaa gtcgcgtccg ccattttttt cgtaatcgaa ccttggagaa gcccacgcgc
    10621 aatacttctt tggcgctgtt tcacttccgg tcgaccttct gaatctttca tttcgtcctt
    10681 aatttcttgc ttcgacatcc gcaagccttt tttatagtca taacgctggt aaaagaagtc
    10741 aagcagccct attactgcga ttacaaggaa gagcgccaga aattcatttt tgaataaagc
    10801 gaaaatttgt ccgagtgagt aaagccaatt ttgcccggtg taactaatga gcgtgtctag
    10861 atgatcccga aagccaatat acgccacgta tgaaagcaac gtaattaaaa gtagcgcttt
    10921 caccacctcg acaattccct tcacactgaa cactcgctta aagtagttcg ctggatttag
    10981 tcgtttgaac tgaggtttca ctgctttcgc ggaaaataaa atcccgactt gcacgccgta
    11041 gttcatcaaa ccaaaaatca caaccatcac cataatcggc atcaacactt tgccaaactc
    11101 catcaagtaa aacaaactgt aactttccat gttcgcaagc ttcggtggct gtttcaaaag
    11161 agcaacaaat gcttgaatcg tgtttttaat aaacatttct ccaaaaaaat aaagaagccc
    11221 agctacaatt agcagtgaaa aagcattatt tagttcttta cttttcgcca cattaccttc
    11281 atttcgagct ttcttaatgc ggcgtggcgt tgctttttcc gtcttattat ccttcgccaa
    11341 gcctttttct cctccctatt ttttcagtaa ataatcaaaa aacgacacat attgttgaat
    11401 catctcatct gtcaaatttt taaaaactgt actcaagata ggaacagcac acgcaaggat
    11461 gaaaatccca aacgtaattt ttataataaa cgcattcata aaaatgttaa tttgcggagc
    11521 gctcttagag ataaaagcaa gaatgatatt aacgataaaa atactaccca taatcgggag
    11581 cgcaatcgac accgcggaag caagtgcaaa accaagcgtc ccaagcagca aatcaataaa
    11641 ccctttttca aataaaatcg acaccgaagc cgtaaattca aacgatttca ttaagtaata
    11701 aatcaagtaa tccatgcctt gaagtgacaa aaatatcact acaaagaaag tatctaaaat
    11761 cgcagcagta atcgagtttt gtgtcccgta agaaggatca atcaagttta cttgcgaaaa
    11821 tcctaaatca taatcaatca taaaaccagc catttttgga attaccgcaa taatttccac
    11881 caatttcgcc agcgctaatc caaaaaccac ttcagacgtt acccggagta gcaaatctgg
    11941 tagcgtcgtt ataccagaaa catcgacccc tgttgccact ggaatggaaa tcgccatccc
    12001 aaaaaccact ttgacactgt tcggaatgtt tcgccctttt aaaagcggaa agaagaataa
    12061 aaaactggca actcggctga aaacaatcac taccgcaagg aaaaattcaa actccatgtt
    12121 tacaccctaa tcatcagggg taatttggaa aagattccta caaacaaatc cgtcatgtgt
    12181 tcaaacatcc acggtccaag aataaatagc gccactacga aagcaacaat cttcggtaaa
    12241 aacgtcagcg attggtcttg aatttgcatc attgccatca atatcgccac cacaatcact
    12301 accacgatac aaatgagcga caccggcaaa ataagcgcca gcccactata gaaaaaatct
    12361 tgaaaaattt gcgtaatcgg cgttaaattc attttgctac tcccttaaaa gtgaattgtt
    12421 tgaaaaatca tgttggtaat caatccgtac ccaccaatga aaataaaaac aagaatctta
    12481 aacggtaagc taatggtcat cggcggtacc atcatcatcc caagatacat cagtaacgta
    12541 ctaacaatta aatctataaa aataaacgct aagtatataa acatcccagt taaaaaacct
    12601 tgggtaatct gtgtcaaaat aaaagcaggc attaaagcca taagcggagc atcttctttt
    12661 tttgtaactg gatcttctcc ttctgctttc aacatcatgt taatatcatg cttatatgta
    12721 ttttccgcga catattttgt caaaagcggc tttgtttcat cccatacttt tgatgcgctc
    12781 cactcttctt tttgcgaagg tttatacaca tcgtcatacc aagcagtaat aagtggttgc
    12841 atcataaaca aagataaaaa cagtgccagt ccaacaagca cttggttggg cggcaagttc
    12901 gtcgcgccaa gcccttgcct cgttaaacca agaacgataa tacagtaagt aaagtgtgtg
    12961 aacattaata caatcgatgc agacaaagaa agaaccgtaa ctagtacaaa cagcgccaca
    13021 ctagaattaa ccccatccgt cccattcaca ccaagtgagt ccagccaact ttctgcatgc
    13081 acattcaccc ctggccaaaa gacaaccaat gaaattgcaa aaataacaat aaaagatact
    13141 tgaaatactc gtctagaagc tattttacgc attttcctta gtctcctctt tcaaaagtaa
    13201 ttctcggaaa agtgcttcat tttggtcagt ttttcctttt aatgacaccg ttcgaatatc
    13261 attattggaa ataatcgcca gcaccttttc cccgtctgcc tccagaagaa ctgcacgtaa
    13321 ctgatgagag attaaaagag tgtctttcaa ctttataaga tcattttcgc tttttctcgt
    13381 gcgattcgct tgcttgtttt tcttaactaa aaaataagaa attcccgcaa gtactgctaa
    13441 aagtacaata atttttaaaa gtgat
//
LOCUS       DABQVC010000066        13432 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.066,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000066 DABQVC010000000
VERSION     DABQVC010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13432
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.066"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     regulatory      145..245
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            354..1631
                     /locus_tag="IBJ56_001346"
     CDS             354..1631
                     /locus_tag="IBJ56_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HAM3417604.1"
                     /translation="MSNEYKFETIQVHGGHTPDGDTHSRAVPIYQTTSYTFDSPEHAA
                     ALFGLQETGNIYTRIMNPTTAVLEERLTLLEGGIGAVATASGMAAITYSILNIAGSGD
                     HIVAAATLYGGTHTLFSHTFKTFGIDVTFVDPNEPENFEKAIKDNTKAVFIETIGNPD
                     INIVDIEKVAEIAHASDIPLIVDNTFATAYLNRPFDFGADIVVYSATKFIGGHGVAIG
                     GAVIDSGKFNWANGKFPKLVVPDDSYNGLSYTNDVGAAAYITKLRVSLLRDTGAALSP
                     FNAFLLILGLETLSLRLEQHVKNAKQVANFLNDHPKVAWVNYPGLSDNKYHELAQKYL
                     PKGPGSIFTFGVKGGYEAGKKVIESVELFSHLANVGDAKSLIIHPASTTHQQLSEEQQ
                     LTAGVKPESIRLSIGIENADDIIQDLTKALEQI"
     gene            1648..2754
                     /gene="metX"
                     /locus_tag="IBJ56_001347"
     CDS             1648..2754
                     /gene="metX"
                     /locus_tag="IBJ56_001347"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HAM3417605.1"
                     /translation="MTLQQKELFQKSPLLLENGETLSPVLVGYETYGTLSASRDNCIL
                     LEHALTGTAHAAKHFESDAPGWWDDYIGPGKTIDTDKYFLVCTNVFGGCSGTTGPSSI
                     NPKTGEPFRLQFPGFSIKDIIKVQRELLEQLGVTRIVSVIGGSMGGMQATEWAIDYAD
                     ITDSIINIASPLAAGPDAIGYNLIMRMAILNDPDFNGGNYVGQPEGGLATARMVGMMT
                     YRTSELFSKRFERFTVAESSPAAFSKEHFQIESYLQYQGDTFVERFDANSYLYLTKAI
                     DLFDVTAPAKDDLPAFAKIKIPYLLIGITTDQLFRIHDLRRGYELLKEWDVPVTYHEV
                     ASEYGHDAFLVEKEVPKFEPLIRSFLSNLPVKSI"
     gene            complement(2792..3592)
                     /locus_tag="IBJ56_001348"
     CDS             complement(2792..3592)
                     /locus_tag="IBJ56_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter"
                     /protein_id="HAM3417606.1"
                     /translation="MDVESSPLMQKIDYSTRKKIDLVNNSILRYIVRAMLACLFLTLG
                     TAVAVMIGDKVDHFAPGLGKITYAFMFSWSLVMIIYMNAELGTSNMMYMTTGVYQKIV
                     KPGKALQILLLCIVCNLLGGILAGYLVSLTSVFHNLPADHFLFTAVSGKLEKAPLQIF
                     VEGIFANIVVNTAVLCTLRMKDDAGKVIAMIFIIFIFAFLGFEHVIANFSSFSLAFFA
                     SGGTLAAMTAGNVTVNLVLALLGNFVGGGLVIGLGYAWLNRTKSIYKD"
     gene            complement(3819..4361)
                     /locus_tag="IBJ56_001349"
     CDS             complement(3819..4361)
                     /locus_tag="IBJ56_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1269 domain-containing protein"
                     /protein_id="HAM3417607.1"
                     /translation="MKKEKTVLIMNFDEESISYQAFSEMKRLHQERKIIGYQMAVVKH
                     EPGNKLVAQDFLDFTGADKNMKDSLIGMLIGILGGPFGILIGWMVGAIVGSMRDAGEV
                     KDALNVFERTLKTIPEGSTGVILIATEQELANVNDVAMDELHGRVQRMDEAIVAQEIK
                     SAQETEGKAKDSAKKHWFSK"
     gene            complement(4489..5259)
                     /locus_tag="IBJ56_001350"
     CDS             complement(4489..5259)
                     /locus_tag="IBJ56_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HAM3417608.1"
                     /translation="MYWTVALALLVYFILWFIISKIKGKYSLVDIAWGGGFVVVAWTG
                     FLTTFSMTAQSITILVLVTIWGVRLFWHLARRNWNKPEDYRYVNMRKRWGTTLVNLKA
                     FLNVFVLQGVLLFIIALPITHSFANETATFAWWQILGIVIWIIGFIFEVGGDLQLENF
                     KKNPANKGKLLTTGFWSVTRHPNYFGEALSWWGVFLVAYTQLNDLWLITSPIVITLLL
                     LFVSGVPLLEKKYQDRADFQAYANKTSKFFPFIGKKGL"
     gene            complement(5259..7025)
                     /locus_tag="IBJ56_001351"
     CDS             complement(5259..7025)
                     /locus_tag="IBJ56_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family EDD domain-containing protein"
                     /protein_id="HAM3417609.1"
                     /translation="MESESKRLLQSMLNGAAEVISKKDELNRINVFPVADGDTGSNLA
                     SLMQAIIDHVSPREYSTKELLEEVASAALIGARGNSGMIFAQYLNAVAESYHHLESTF
                     DGLVQAFQNAVHKAYEALLDPKEGTILSVMKAWSEELAGTYEQERSFQQSLLNAQIVA
                     EKALINTEFQMPILRKNRLVDSGAKGFYYFITGLTNAYCGKAVSDPVRFTEVEQTAEH
                     RHVETSEPKYRYCSEFIIKQATISHQHLQEILAAKGDSLVIAGNEKQIKIHIHTNEPK
                     EVLSLMAAYGVMTYQKVDDMRLQYEVTKKPRAKIAIVTDSIADLPEAFLLEHQVHVLP
                     MNILAGEENFLDKLTVGPNMMQEKLRKQTKMSTAQPTIRTVDALLSFLEHKYEHVLVI
                     SVAAKLSGTYQLIKQRIKARELSSDWIRVIDSKLNSVAQGILVKQAVELVESGKSWES
                     IYPEVEQMIERTFIYVAVADLSPMVQSGRIPRVLGKLAQKLSLYPIVSLDESGDGKLI
                     GVSFSQKQSMKKIIKKIAKLQLKELAITHVSSRDTAAIWQKQLEKETGEISYLVDSSA
                     AIAISAGLGSVAVAGIKKEETI"
     gene            complement(7028..7441)
                     /locus_tag="IBJ56_001352"
     CDS             complement(7028..7441)
                     /locus_tag="IBJ56_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2177 family protein"
                     /protein_id="HAM3417610.1"
                     /translation="MAQFLKLFLTSAVVFLIFDLFWLLVASKKMYQQFIGDLMGDVKL
                     APAVIFYFIYVVGVTFFVLLPGTEKGSLGYTILAGALFGLVCYATYDLTNLATLKDWP
                     ITMTIIDLVWGTAVTTVTSVIVYFINLHFFSGAGS"
     gene            complement(7579..8982)
                     /locus_tag="IBJ56_001353"
     CDS             complement(7579..8982)
                     /locus_tag="IBJ56_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HAM3417611.1"
                     /translation="MTSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNPAQFITGSP
                     SHQAFFASVAHFKQEIDKTAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAK
                     RDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFK
                     VTLKHENIRKESLFLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARD
                     FPELDKTSHLSRYLRTGEISIRTIWQTLQETEATEGRATFEKELCWRDFYNMIYVSFP
                     NQKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITA
                     SFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQ
                     KFDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRK
                     LAIARYEFSKEHSRGNI"
     gene            complement(9094..11559)
                     /locus_tag="IBJ56_001354"
     CDS             complement(9094..11559)
                     /locus_tag="IBJ56_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417612.1"
                     /translation="MAFKKLILVLTIAALFLGFKIVVAAENGSRDLASNEAIVTNFTE
                     LKTAISEDNGIDTVYLGADVELSGGIIIPATKKTFTLSGKNPATGEIHTLTETMASAG
                     AQSSVITVNTNTGAKETTLRDINVVGKNYYGTISVYGAAKNVVQNYENVHYQGPQMIY
                     NLNGTANFKGTNDITIASVVSGSAAPNEVAEIKGVSVSGKLNINHASSNANSAFWFGG
                     GTAEVNTFTVEENADVTILSNGTGMFYRSGAKPIDIDVKKNAKLAITSNNNIFRDTPG
                     GTVKIASGADVTMTKTAGGNPLLWVADDITVSPDARFILNKTGGTGYIIQFYNATAKL
                     DINDPRSFLITTNSNTPMFYWPYANTFNLNAQMVNYWDTVGTIDRTDLASQSFSLPNG
                     ENVTGSLTYTGTTTKILSTNAGMTPTNFNQNTARMIAMGRLEGTINPVTDADNEITGT
                     ATPNAFISISYTENGENKVLEGPANEAGTYRIAIPNGFIKPYIKLTTTIKQDQKRITL
                     DDITVEDVTPPSGEAVTQIIQLGDPFPDVAELVTNIYDHSDNTSGAGVTTTLQSAPDT
                     NVFGPTEAIVRLEDKAQNYVDIRVPVFIKDDETEIQDGKALRAADFSVNVKDIIELNE
                     AELEQFILSKSGAKAFNIETGEDLSAELKVASTNLKKETGTYAATIQIDGLTKEIAIQ
                     VTGELKFNHVPETISFETMELNQQKNIAKRNADFDLSVLDSRGSGGKFSVTATVKTPL
                     TSTTNSAHTLPNGLIFIDNTGAKKILSAEPITIFESQSASEMIVPIEWAEDQGILVEV
                     DAAEAYVDESYETTIEWTLTDAP"
     gene            complement(11577..12602)
                     /locus_tag="IBJ56_001355"
     CDS             complement(11577..12602)
                     /locus_tag="IBJ56_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF916 and DUF3324 domain-containing protein"
                     /protein_id="HAM3417613.1"
                     /translation="MKKSFLSLLFIIPLLVTCSNFAEAQAAEGDVGYSVQAHIPANQI
                     DKRQTYFDLKMQPKQKQTVNIDVMNSSNEEIQVEAAINYASTNRTGVIDYTKNDLTKK
                     DKSLEYPLPELAKIPDDQKLLTIPVDGKKTVQVMIEMPAESIDGVVLGAVEFKKKNTN
                     ETKKTKGVSLKNEYSYIVGMQLAETDKQVKPHMNLLSIKPALLNYHTAIVAKLQNDQP
                     VILENLSIDAKVYQQNSDKLLYQTKKANMKMAPNSNFDFGIDLENQPLKEGKYRLKMT
                     ATNGVETWTWDEAFTIGKEGQNLNKEAVNLEKTNTWLYVAIAAGVVLIALIIILVIRK
                     RRQKQEK"
     gene            complement(12670..13383)
                     /locus_tag="IBJ56_001356"
     CDS             complement(12670..13383)
                     /locus_tag="IBJ56_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxL domain-containing protein"
                     /protein_id="HAM3417614.1"
                     /translation="MIIKKTLIVGLIGISSVTLFAPAAFAVTSEGDSKATVKFKAGTG
                     VVNPVDPENPTKPIDPLDPSNPTDPGTGNTGSLTLDYVSSVNFGEHEVSSTEQSYSST
                     SRKPFIQISDRRGTGAGWKVTATATAFQNEDGAASLSGATLSFKNGETASASNTATTP
                     TAAQTVELPTDGTSIVSVVSAKESEGMGTWINRWFGATPNDTASLNNNVQLTIPAGSA
                     TLGDHEATITWTLSDAPGV"
BASE COUNT         3812 a         2873 c         2395 g         4352 t
ORIGIN      
        1 aaaacctttt aaaaaaattt tttctttcaa aaaaaacgtc gttgtcacaa attcaacaca
       61 aaaagtacta attttagact ttttcagcac atagttgaca attgatggca tccagcgtaa
      121 tatataactt aatttaatag tattttctta tcacgaaagg tggagggact ggccctttga
      181 agccttagca accggaattt attttcacgg tgctaattcc agcagtatat tctgaaagat
      241 aagtcggaaa tccaagttta ggaaactcta tcctctctgg cggcttatat actgctaggg
      301 aggttttttg atggaaatta ctgataaata catattaaag aggagtggat tttatgagta
      361 atgagtataa attcgaaaca attcaagtac acggcggaca cacaccggac ggagatacgc
      421 attctagagc cgtaccaatt tatcaaacga cgtcatacac atttgatagc ccggaacatg
      481 ccgcagcctt atttggttta caagaaactg gaaatattta tacacgaatt atgaatccga
      541 ctacagctgt tttagaagaa cggttaacgc tacttgaagg cggtattggt gcggttgcaa
      601 ctgcttctgg gatggctgct attacttact ctattttaaa tattgcgggt tctggagatc
      661 atatcgtcgc agccgcaaca ctctatggcg gaacgcacac gctattttcc catacgttta
      721 aaacttttgg gattgacgta acgtttgttg accctaatga acctgaaaat tttgaaaaag
      781 cgattaaaga taatacgaaa gctgttttta tagaaacaat tgggaatcct gatattaata
      841 ttgtcgatat cgaaaaagta gcagaaattg cgcacgcatc cgatatcccg ctcatcgttg
      901 acaacacatt cgcgaccgct tatttgaatc gcccgtttga ttttggcgca gatatcgtcg
      961 tttactcggc aacaaaattc attggtggtc acggggttgc aattggtggt gcggttattg
     1021 actcaggtaa atttaactgg gcaaatggca aatttccaaa gctagtggta ccagatgata
     1081 gctacaatgg tttgtcttat acaaatgacg ttggcgcggc ggcttatatt accaaactac
     1141 gcgtctcact ccttcgtgat actggcgcag cactttctcc gttcaacgcc ttcttactca
     1201 ttttaggcct agaaacacta tccttacgcc ttgagcaaca cgtgaaaaat gcgaaacaag
     1261 ttgccaattt cttaaatgac catccaaaag tagcttgggt aaattatcca ggtttgagcg
     1321 acaacaaata ccacgaatta gcccaaaaat atttaccaaa aggacctggc tccattttca
     1381 catttggggt taaaggtggc tacgaggctg gtaaaaaagt gattgaatcc gtggaattat
     1441 tctcgcattt agcgaatgtt ggtgatgcaa aatcgcttat catccaccca gcttccacga
     1501 cccatcaaca actaagcgaa gaacaacaat taacagctgg cgtgaaacca gagtccattc
     1561 gcctatctat cggaatcgaa aatgccgatg atattatcca agatttaacg aaagcattag
     1621 agcaaattta ggaggaagtg aagagaagtg accttacaac aaaaagaact atttcaaaaa
     1681 agtcctcttc tacttgaaaa tggagaaaca ttaagccctg ttttagtcgg ctatgaaaca
     1741 tacgggacac tttccgcctc acgcgataat tgcattttat tagaacacgc ccttactggg
     1801 acggcacatg cggcgaaaca ttttgagagt gacgctcctg gttggtggga tgattatatt
     1861 ggtccgggga aaacgattga tacagacaaa tattttctgg tttgcaccaa tgtatttggt
     1921 ggttgtagtg gcacgactgg accttcttcg attaatccaa aaactggcga gcctttccgc
     1981 ttacagtttc caggtttttc gattaaagat attattaaag tgcagcgtga acttttggag
     2041 caacttgggg ttacgcgaat tgtttcagtg attggcggat cgatgggtgg tatgcaggcg
     2101 acggaatggg cgattgatta tgccgatatc acggatagca ttatcaatat cgcctccccg
     2161 cttgctgctg ggcctgatgc gattggttac aacttgatta tgcgcatggc gattttgaac
     2221 gaccctgact ttaatggggg caactatgtt ggtcaacctg agggcggact tgctactgcg
     2281 cgaatggttg ggatgatgac ttaccggacg agcgaacttt tctcgaaacg ctttgaacgt
     2341 ttcactgtcg ccgagtcttc tcctgccgct ttctcaaaag agcattttca aattgaatcg
     2401 tatttgcaat atcaagggga tacttttgtc gagcgatttg acgcgaatag ctacttatat
     2461 ttaacaaagg caattgattt attcgatgtt actgctcccg cgaaagacga tttgcctgcc
     2521 tttgcgaaaa ttaaaattcc gtatttgctc attggcatca cgacagatca acttttccga
     2581 attcatgatt tgcgccgcgg ttacgagctt ttaaaagaat gggatgtgcc ggttacttat
     2641 catgaagtgg cctccgaata cggtcatgac gcttttctag ttgaaaaaga agtgccgaaa
     2701 ttcgaaccgc tcattcggtc atttttaagt aatttacctg ttaaaagtat ataaaaaaga
     2761 gacctcggaa aatttccggg gtctccttta attagtcttt ataaattgat ttcgttcggt
     2821 taagccaagc atagccgagt ccgataacaa ggcctccacc tacaaaattc ccaagtaaag
     2881 caagtactaa attgacggtc acattgcccg ctgtcattgc agcaagtgtt ccaccagaag
     2941 cgaaaaatgc taatgagaaa gaggagaagt tggcgataac gtgctcaaat cctaagaatg
     3001 caaagatgaa aataatgaaa atcatcgcaa tgactttacc agcatcatct ttcattcgaa
     3061 gtgtacaaag cacggccgta tttacaacaa tattggcgaa aataccttct acaaaaattt
     3121 gtagtggcgc tttttcaagc ttaccgctaa cagcagtaaa taagaaatgg tcagcaggta
     3181 aattatggaa aacggatgtt agggaaacta agtacccggc aagaattcca cccaataaat
     3241 tacaaacaat acataaaagc aaaatttgta atgcttttcc tggtttaaca attttttgat
     3301 aaacaccagt tgtcatatac atcatgttag aagtaccaag ctcagcattc atataaataa
     3361 tcataacgag cgaccaacta aacataaatg catacgtgat tttaccaagt cctggagcga
     3421 aatgatcaac tttatcacca atcattacag cgaccgcagt ccctagtgtc aagaataaac
     3481 atgctaacat cgcgcgcacg atataacgaa gaatactatt atttactaaa tcaatttttt
     3541 tgcgcgtact ataatcaatt ttctgcatta atggactact ttccacatcc aaattatttc
     3601 atctccaaac aaaaaatttt cttgtgaaat tcacaacttg tttattgtag catgttttta
     3661 atttgatgca aatagttttc agaaaataaa aatgagttaa gcgttaccat cttgaatttt
     3721 tttctatctg ggtgttttat gttgttaatt tccccgtttt cacactctta aaacacaaaa
     3781 aacgagaaca gatttctctg tcctcgtttg aaatattttt atttactaaa ccaatgtttt
     3841 ttagcagaat cttttgcttt tccttctgtt tcttgtgcgc ttttgatttc ttgagctacg
     3901 atagcttcat ccatacgttg cacacgcccg tgtaactcat ccattgctac gtcgtttaca
     3961 tttgctaatt cttgttctgt cgcaataagg atgacacctg tagaaccttc tggaattgtt
     4021 tttaatgttc tttcaaatac atttaaagca tctttcactt cgccagcatc tcgcatggaa
     4081 ccaacgattg cgccgaccat ccaaccaatt aaaataccaa atggaccgcc taaaatacca
     4141 attaacatac caataaggct atctttcata tttttatcgg caccagtaaa atcaagaaaa
     4201 tcttgtgcaa caagtttatt tcctggctca tgttttacaa ccgccatttg ataaccaatg
     4261 attttgcgtt cttggtgtaa tcttttcatt tcagaaaaag cttggtaaga aatactttct
     4321 tcatcgaaat tcataattaa cactgttttt tcttttttca tctgttgtac ccctctcgcc
     4381 tcataaagta ttatattcag atactattta tcgtacctat ctttcatttt actcgctctc
     4441 tcatgtaaat agcaattaat agcaatgtca agataaaata actacttttt acagaccttt
     4501 tttaccaata aaagggaaaa attttgacgt tttgttcgca tatgcttgaa aatccgctct
     4561 gtcttgatat tttttttcaa gtaacggaac accggaaaca aatagtaata ataaagtgat
     4621 aacaatcggg ctagtaatca gccagagatc atttaattgc gtataggcaa ctaaaaatac
     4681 accccaccaa ctaagtgctt caccaaaata atttggatgc cgtgtgactg accaaaatcc
     4741 agttgttaat aatttgcctt tattggctgg atttttcttg aagttttcta attgcaaatc
     4801 gccaccgact tcaaaaataa agccaataat ccagataaca ataccgagga tttgccacca
     4861 agcgaatgtc gctgtttcat tagcaaaact atgtgtaatc ggtaaagcaa taataaataa
     4921 taaaacacct tgcaacacga agacatttaa gaaggctttc aaattaacta atgtcgttcc
     4981 ccagcgtttg cgcatattaa cgtagcgata atcttctggt ttgttccaat tccggcgcgc
     5041 taaatgccaa aacaaacgga caccccaaat cgtcactaaa acaagtatgg ttatactttg
     5101 cgctgtcatg ctaaatgtcg ttaaaaatcc agtccatgct acaacaacaa agccgccgcc
     5161 ccacgcaata tcaacgagcg aatattttcc ttttattttt gaaataataa accagagtat
     5221 aaagtaaaca agtaaagcga gtgctactgt ccaatacatc atatcgtttc ctccttttta
     5281 atccccgcaa ctgcgacact tccgagtcca gcactaatcg caatggctgc cgaactatcc
     5341 actaagtagc tgatttcccc ggtttctttt tcaagttgct tctgccaaat tgccgcggtg
     5401 tctcttgaag aaacatgtgt aatcgccagc tctttcagct gtaattttgc tattttttta
     5461 atgatttttt tcatactttg cttttggcta aacgatacgc ctatcaattt gccatccccg
     5521 gactcgtcca aactcacaat cggatagagt gataatttct gcgcaagctt tcctaacact
     5581 cgtggaattc tgccagactg gaccatcggc gacaaatctg caaccgccac ataaataaag
     5641 gtccgctcaa tcatttgttc cacttcggga taaatagatt cccatgattt acctgattcc
     5701 actagttcta ctgcttgttt cactaaaatt ccttgcgcga ccgaatttaa tttagaatca
     5761 attacacgta tccagtccga ggacaactcc cgcgctttta tccgctgttt gattaattga
     5821 taagttccgc ttaatttcgc cgcaacggag ataacaagca catgttcata tttgtgttct
     5881 aaaaaagata acaaggcatc caccgtacgg attgttggct gggctgtact cattttcgtt
     5941 tgttttctta atttttcttg catcatgttt gggccaaccg tcaatttatc aagaaaattc
     6001 tcttctccag ctaaaatatt catcggtaat acatgtactt ggtgctccag taaaaatgct
     6061 tctggtaaat cggctatcga atcggtcact atagcaatct ttgcgcgagg cttttttgtg
     6121 acttcatatt gcagacgcat atcatctact ttttgatacg tcatcacgcc gtatgctgcc
     6181 atgaggctta aaacttcttt tggttcattt gtgtggatat ggatttttat ttgtttctca
     6241 ttacctgcaa ttactaagga atccccttta gctgcgagaa tttcctgtaa atgttgatgt
     6301 gaaatagtcg cttgtttaat aataaattcc gagcaataac gatatttcgg ctcgcttgtt
     6361 tcaacatgcc tatgttccgc tgtttgctct acttccgtaa aacgaacggg gtcagaaacc
     6421 gccttaccac aataagcatt tgtaagcccg gtgataaagt aataaaaccc tttcgcacca
     6481 gaatccacca accggttttt ccgtaaaatt ggcatttgaa attcggtatt aattaatgct
     6541 ttctccgcaa ctatttgtgc atttaaaagc gattgctgga aagaacgctc ctgctcatac
     6601 gtcccagcaa gctcctctga ccaagccttc atcacagaca aaatagtccc ttcttttgga
     6661 tccaacaagg cttcataagc tttatgcacc gcattttgaa acgcttgaac taatccatca
     6721 aaagtcgatt caaggtggtg ataactttcc gcaacagcat ttaagtattg cgcaaaaatc
     6781 atccctgaat tgccacgagc accgatgagc gccgcgctag ctacttcctc tagcaattcc
     6841 ttcgttgaat attctctcgg ggaaacatga tcaatgatcg cttgcattaa agaagctaaa
     6901 ttactacccg tgtcgccatc cgctacagga aaaacattta ttcgattaag ctcgtctttt
     6961 ttactaatta cttcagccgc cccgtttagc atactttgta atagacgttt gctttctgac
     7021 tccatcatta ggaacctgct cccgagaaga aatgcagatt aataaagtaa acaatcactg
     7081 aagtcacagt tgtcacagcc gttccccaaa cgagatcaat aatggtcatc gtaatcggcc
     7141 aatctttaag tgtcgccaag ttcgtcaaat catacgtcgc ataacaaact agaccaaaca
     7201 acgcgcctgc taaaatggtg taacctaaac ttcctttttc tgtcccagga agtaaaacga
     7261 agaaggtaac accaacgaca taaataaagt aaaaaataac tgctggagca agttttacat
     7321 cccccattaa atccccaata aattgttgat acattttttt agaagctacg agtaaccaaa
     7381 aaagatcaaa aatcaagaaa actactgcac tcgttagaaa tagctttaaa aattgcgcca
     7441 ttgtgattcc cccttatcac ttgataaatg aattttaaca tacccaggtt cttactccta
     7501 gaaggttgct caagacttat actttgtgaa tactgccaca aaaaaatcaa tcatttaatt
     7561 aaatgattga ctcattatct atatatttcc cctagaatgc tctttgctaa actcgtagcg
     7621 tgcaatggct aatttccgtc gttctttatg gtcaactatt ggaaatggat agtcttttcc
     7681 taacagcaag ccatgctctt tctgctcagt ttctgacatt ttttctggtt gatgaatata
     7741 tttatcaggt agattcgcta actcttttac atattttcga ataaatttcc cagtcgaatc
     7801 aaatttttgt gattgtgtcg ttgggttgaa aatcctaaag tatggcaccg catccgttcc
     7861 agtcgaagcc gcccattgcc agccaccaat attactcgca ggatcataat caatcagcat
     7921 ttgttgaaaa tacttttcgc caaaacgcca atcaatcagc aaatcttttg ttaaaaagga
     7981 cgccgtaatc attcttagtc gattatgcat ccaaccagtt tctttcaact ggcgcatcgc
     8041 cgcatcaacg agcgggaaac cagtcttccc ttcttgccac gctttgaaat attcacggtt
     8101 attttcccat tcaataaaac gataattttc ttggatcggc tcgttttttt ggttaggaaa
     8161 agaaacgtaa atcatattat aaaagtcgcg ccaacacagt tctttttcaa atgtagctcg
     8221 tccttctgtt gcttctgttt cttgaagtgt ctgccaaatc gtccgaatcg agatttcccc
     8281 cgttcgtaaa taacgtgata aatggcttgt tttatccagt tccgggaaat ctctcgcttt
     8341 gtcatagtca gcaacatcgt gtttaataaa attcgcaagt ctcgtgttcg ctgctcgttc
     8401 accaatatct aatatcggta aatcgctagt catttccgca aattgttctt catatttcag
     8461 aaacaagctt tctttccgga tattctcatg ctttaaagtc actttgaacg gcgtttcttt
     8521 tatttcttcg cgccattttt tataataagg ggtaaaaatt ttatagtatt ctgttggaga
     8581 tttctttact tcttccgctg aatgaagata gctatcgtgg aaggcttgaa cctcgatttt
     8641 ttgttcgtca aagaacgctt gcgccgcctc atcccgcttt gctccgtatc ctgtttcatc
     8701 acggttgaaa taaactttat cccagcttgg tagcgtatct ttaagttgtt ggaagcattc
     8761 tatcggttca ccaaacatga tttgtaaatg cgcagtttta tcgatttctt gcttaaaatg
     8821 agccacactt gcaaaaaaag cttggtggct aggacttcct gtgatgaact gtgctggatt
     8881 tacttgaaat aacaaaagca aatcgtcctc tttacaagca tgatagagag ctttattatc
     8941 gtttactcga agatctctcc gaaaccacat taccgaagtc attttcttcc acctttcgca
     9001 aattacttaa cgctattata cgagaaacta gtgtatttag aaaacaatgg gcttataaca
     9061 tgaaaaaacc tgttaacttt tgctaacagg tttttacgga gcatccgtca aagtccactc
     9121 gattgttgtt tcatagcttt catccacata agcctccgct gcatcaactt ctaccaaaat
     9181 cccttggtct tctgcccatt ctatcggaac aatcatctca ctagctgact gcgattcaaa
     9241 aatggtgatt ggttcagcgg aaagaatttt tttcgctcca gtattatcaa taaaaatgag
     9301 cccatttggc aaagtatgcg ccgaatttgt cgtggatgtc agcggtgttt taacggttgc
     9361 tgttacgcta aatttgccgc ctgagcccct tgaatcaagc acagataaat caaagtcagc
     9421 gtttcgtttt gcgatatttt tttgttgatt aagctccatt gtttcgaagg aaatcgtttc
     9481 tggcacatga ttaaatttaa gctcacccgt aacctgaatc gcaatctctt tcgttaatcc
     9541 gtcaatttgt atcgttgccg cataggtgcc tgtctctttt ttcaaattgg tgctagctac
     9601 tttcaactcc gcgcttaagt cctcaccagt ttcgatattg aaagcttttg cacccgattt
     9661 gcttaaaatg aattgctcca gttcggcctc attgagctcg ataatatctt ttacatttac
     9721 cgaaaagtcc gccgctcgta atgctttgcc atcttgtatc tctgtttcat catctttaat
     9781 aaaaacgggt acacggatat ccacgtaatt ttgtgcctta tcttctaagc gaacaatggc
     9841 ttctgtgggt ccaaatacat tagtatcggg cgcgctttgt aaagtagttg taactcccgc
     9901 tccagatgta ttatcggaat gatcataaat atttgttact aattcggcta catctggaaa
     9961 gggatctcca agttggataa tttgagtaac agcctcacca cttggcggag tcacatcttc
    10021 tacagttata tcgtctaatg ttatcctttt ttggtcttgt ttaatggttg tagtcaattt
    10081 aatgtaaggc ttgataaaac catttggaat agcaattcga taagttcccg cctcatttgc
    10141 cggtccttct aaaaccttat tttccccatt ttctgtgtat gaaatactta taaaagcgtt
    10201 tggtgtcgct gttcctgtaa tttcattatc tgcgtctgtc actggattta tcgttccttc
    10261 aagtcgcccc attgcaatca ttcgcgcggt gttttgatta aaattagtcg gcgtcatccc
    10321 cgcattcgtt gacagaattt ttgtcgttgt ccctgtgtac gtcaaactcc ccgtcacatt
    10381 ttccccattt ggcaaactaa aactttgcga tgccaaatcc gttcgatcaa tggttccaac
    10441 cgtatcccag taattcacca tttgcgcatt taaattaaag gtgttcgcat aaggccagta
    10501 aaacatcggc gtatttgaat ttgtcgtaat taaaaagctc cgaggatcat ttatatctaa
    10561 cttcgccgtc gcattataaa actggataat atagccagtt ccgcctgttt tattcaagat
    10621 aaagcgggca tcaggactta cggtaatatc atctgccacc catagaagtg gattcccgcc
    10681 agcagttttt gtcatagtta catccgcacc tgacgcgatt ttaacagttc cgcccggtgt
    10741 gtctcggaaa atattattgt tagaagtaat agctaacttc gcattctttt tcacatctat
    10801 gtcaattggt tttgcccctg aacgataaaa catccctgtc ccattagaaa gtatcgtcac
    10861 gtctgcattt tcttccactg taaaagtgtt tacctcagcc gttccaccac cgaaccaaaa
    10921 agcactattc gcattcgaac ttgcgtgatt gatattcaac ttaccggaaa cgctcacgcc
    10981 tttaatttcc gcgacttcat ttggtgccgc agaaccagat acaacggacg ctattgttat
    11041 atcattggtt cctttaaaat tcgccgttcc attcaaatta tatatcattt gcggaccttg
    11101 atagtgaaca ttttcatagt tttgtacgac gttttttgca gccccataaa ccgaaatcgt
    11161 cccataataa tttttcccca caacattaat atctcttaaa gttgtctctt ttgcacctgt
    11221 gttggtatta actgtaatca cgctgctctg ggcaccagct gatgccattg tttctgtcaa
    11281 agtatgtatt tcacctgttg ctggattttt tcctgataaa gtaaatgtct ttttcgtcgc
    11341 tgggatgata attccacccg ataattcaac atctgcacct aaatacactg tatctattcc
    11401 attatcttcg gaaatagctg tttttaattc tgtaaaatta gtcactatcg cttcatttga
    11461 tgctaagtcc ctactcccat tttccgctgc taccactatt ttaaaaccaa gaaaaagagc
    11521 cgcaatggtc aatacaagta ttaatttttt gaaagccaat tcgccagctc ctttctttat
    11581 ttttcttgtt tttgtcttcg ttttcttata accaaaatga tgattagtgc tataagaact
    11641 acacctgcag caatcgcaac gtaaagccat gtgttcgttt tctctaagtt tactgcttct
    11701 ttatttaagt tttgtccttc tttaccaatg gtgaacgctt cgtcccaagt ccaggtttcc
    11761 acgccattcg ttgcagtcat ttttaatctg tatttacctt cttttaaagg ttgattttcc
    11821 aagtcaatcc caaaatcaaa attggaattt ggcgccattt tcatattcgc tttctttgtt
    11881 tggtaaagta atttatccga attttgttga tagacttttg catcaatact tagattttcc
    11941 agtatgactg gttggtcgtt ctgtaatttg gcaactatcg ctgtgtgata gttaaggagt
    12001 gccggtttga tacttagtaa attcatatgt ggtttgactt gtttgtcggt ttcagctagt
    12061 tgcatgccga caatatagga atattcattt tttaaggaga caccttttgt ttttttcgtc
    12121 tcgttagtat ttttcttttt aaattctact gcgcccaata caacgccatc aatcgattca
    12181 gcaggcattt caatcatcac ttggacggtc tttttgccat ctactggtat cgttaggagt
    12241 ttttggtcgt ctggaatttt agctagttct ggaagtggat attctaaact tttatctttt
    12301 ttcgtaagat catttttggt gtaatcaatg acaccagttc gattggtgga tgcgtagttg
    12361 attgctgctt ccacttgaat ttcttcattt gaactattca ttacatcaat gtttactgtt
    12421 tgtttttgtt tcggctgcat ttttaggtca aaataagttt gtcttttatc tatttgattg
    12481 gcggggatat gagcttgaac ggaataaccg acgtctcctt ctgccgcctg tgcttctgca
    12541 aaattgctac atgtaactaa taacggaata atgaacaata aactaagaaa acttttcttc
    12601 aattaaacct tccttccatc gtttttaata aaaatttgcg tctagaagtg aattctaaac
    12661 gcaaattttt taaactcctg gcgcgtcaga taatgtccat gtaatagtcg cttcatggtc
    12721 tccaagtgtt gcgcttcctg ctggtatcgt taattgaaca ttgttgttta aactagctgt
    12781 atcattcggt gtagcaccaa accaacgatt aatccatgtt cccatgcctt ccgattcttt
    12841 tgccgaaaca acactcacaa tcgaagttcc atctgttggt aattcaactg tttgagcagc
    12901 agttggtgtc gttgctgtgt tgctagcaga tgctgtttct ccgtttttaa atgatagtgt
    12961 cgctcctgat agggaagctg caccgtcttc attttgaaaa gcggttgcgg ttgctgtcac
    13021 tttccaacca gctccagttc cacgacggtc agatatttgg ataaacggtt ttcttgatgt
    13081 ggaggagtag ctttgttccg tggatgatac ttcatgttct ccaaaattaa cagatgacac
    13141 ataatccaat gttaaagaac cagtatttcc agttccagga tcagttggat tacttggatc
    13201 tagcgggtca atcggtttcg ttggattttc cgggtcaacc gggttaacta ctcccgtccc
    13261 agctttaaat ttaactgttg cttttgaatc tccctcagaa gttactgcaa aagcagccgg
    13321 tgcaaaaagt gtgactgaac ttatgccaat taatcctaca attaatgttt ttttgataat
    13381 caatttttgt ttcccctttc ctcatacact ggcttcatat tatgatgaaa aa
//
LOCUS       DABQVC010000067        13373 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.067,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000067 DABQVC010000000
VERSION     DABQVC010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13373
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.067"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            143..2616
                     /locus_tag="IBJ56_001357"
                     /pseudo
     CDS             143..2616
                     /locus_tag="IBJ56_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681151.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
     gene            2815..3468
                     /locus_tag="IBJ56_001358"
     CDS             2815..3468
                     /locus_tag="IBJ56_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3417615.1"
                     /translation="MDDWSTLIGELEHNTPEKVWIVREELNISEVFEIQKLEAHFILV
                     LEGVLRMENEHQQILHYFRENNVIYQSPYELRVQNKLRLVAETPAHIVLLHREFFLNY
                     ATNQPAYSEKLVRAIMDNAASFMFELMKNDLKSEDRLAYSLQQLCQSLELEVKNEFYL
                     LPHYINKNKLALYSDISRKSLYKYLQNLERKGQIKMNGNQILVRISRFTNSENVDWL"
     gene            3657..5273
                     /locus_tag="IBJ56_001359"
     CDS             3657..5273
                     /locus_tag="IBJ56_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3417616.1"
                     /translation="MKLGKVGALLLGTALVFQAPFQVFATSVNGEEQVKKEAAAPKIS
                     VNKQTLAATSDLEQTVGEAITKTIHLQDQALPNNEWGSYISDVKVTLSNMDGISYDVK
                     YGPLSEDGTHYQYADITLSGAPTKAGTGSISLEYYDGAGNGGVYSYSVNTKSKTTIQY
                     VDGDGNKLAEDTVKTGDLNTAYTSEPKTIDGYEVDETKLPSNQNGQFAETNQTVTYIY
                     SKTKSEVNKGTVGISFYTPDGSRRELKSSLDLSYAYPDGVPTDTVTFGDLAKNTTYKD
                     LRNTPDAPTLLWNDLLHYMVDYMNGDIDAAQFEEAVGLTPANFDLDFISRNFEGYKFD
                     EAMYQENLSKLVTFEQDGDQVDLQVPFKKVEVGADITVKYIDTEGNELASVETLSGDV
                     DDNYTSEAKTIDGWTLKETPNNATGVFSKEAQTVTYVYEKNEDTDVTPAPDNSADTND
                     DSNSSDNTATTDDNSSSTVKEKAQTQASSPKEEKVTTQESTSNKVTTQPKESLPKTGD
                     NVLESSLLVGLGMLLLGGLFVFLRKTRKVK"
     gene            complement(5359..5667)
                     /locus_tag="IBJ56_001360"
     CDS             complement(5359..5667)
                     /locus_tag="IBJ56_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HAM3417617.1"
                     /translation="MKVSKSFEAFAKEAPEVHSAWMETVHKLDAASKLDKKTEELAYI
                     AVMAATRLESGLPFHVKMAKTNGATRDEIISAVLVGLPAVGNTVISALPVALEAYDEV
                     "
     gene            complement(5730..6545)
                     /gene="pdxK"
                     /locus_tag="IBJ56_001361"
     CDS             complement(5730..6545)
                     /gene="pdxK"
                     /locus_tag="IBJ56_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HAM3417618.1"
                     /translation="MTIKKTLTIAGSDSSGGAGLQADLKTFEEYGTYGFSAITTIVTM
                     DPDNNWAHGVTPIDAQLVREQLKTILSGGPVDAMKTGMLGSIDIIKATREAIDKYDLK
                     NVVIDPVMVCKGEDELIQPENAEAIRDLLLPKATITTPNLFEAGQLSGLGKLTTLDDM
                     KKAAKKIIELGAKYVVIKGGKALESDKAIDLLYDGKEFTIYEVEKISPSHNHGAGCTF
                     AAAITAGLAKGLTVEEAVAKAKDFVTAAIKGGFALNEFIGPVWHGAYNKAENR"
     gene            complement(6571..7437)
                     /locus_tag="IBJ56_001362"
     CDS             complement(6571..7437)
                     /locus_tag="IBJ56_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3417619.1"
                     /translation="MIKVIASDMDGTLLNSDIEIAQENVEAIEKARAKGIHFVLCTGR
                     MYDDAMGLINKANLYAPAICMNGAEIRDEHGKIILQHPIDRNLARNTYNTLTELGMYT
                     EFFTDMGPITTDKARGKEFMIEMHKRIHPDVPAETIMDKVEERFESKDVHEIPDVERI
                     LGNKDLTILKFISFSSDKDILAKAKQKLEKDSELSVTSSFSDNIEITHREAQKGISLQ
                     YYVEKLGVTLDETFAIGDNMNDISMLKMAGYSVAMGNGEEEVKDLAEHVTLSNDEHGV
                     AAAIYKMLETND"
     gene            7611..8174
                     /locus_tag="IBJ56_001363"
     CDS             7611..8174
                     /locus_tag="IBJ56_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl transferase"
                     /protein_id="HAM3417620.1"
                     /translation="MKTELEKMIAGEMYDPSDRELAHGRNRARKFCREINDAMDSESR
                     ASVLKRLFGGTKENVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMA
                     PGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAV
                     VTKSFPDNVVLAGNPARVIKTIEVEEK"
     gene            8171..8434
                     /locus_tag="IBJ56_001364"
     CDS             8171..8434
                     /locus_tag="IBJ56_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwdI family protein"
                     /protein_id="HAM3417621.1"
                     /translation="MIIADSKIFEQMENELAKAKAATTKASQDKHLHGLMLLVQLAKT
                     GDETTAAVEPIAIQSAEPAQIASMDGKKIELEDGANGDSLLDF"
     gene            8444..8821
                     /locus_tag="IBJ56_001365"
     CDS             8444..8821
                     /locus_tag="IBJ56_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HAM3417622.1"
                     /translation="MKKTIITGATFAGLAVLLGAFGAHALKDVLGSYASTWETGVQYQ
                     MFHAGGILVVGLLMEKQASRLYTWAAILFSVGIVFFSGSLYVLSISKVSILGAITPIG
                     GVCFVVGWFLLILGVSRRTMSRY"
     gene            8935..9870
                     /locus_tag="IBJ56_001366"
     CDS             8935..9870
                     /locus_tag="IBJ56_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417623.1"
                     /translation="MTYALEIKGLRKIYSTGVEALRGVDLTVEEGDFYALLGPNGAGK
                     STTIGIITSLVNKTSGQVSVFGYDLDTDIVRAKQQIGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVSRKEAIKRSEKYLKQSNLWEKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRREMWTFLRELNESGTTIILTTHYLEEAEMLCRNIGIIQSGELIENT
                     SMKSLLSKLQFETFIFDLEPYEEAFEITGYNHVFEDKQTLSVEVERNQGVNHIFEQLS
                     EHGIKVLSMRNKSNRLEELFLKITEEKHQVGEKHV"
     gene            9863..10633
                     /locus_tag="IBJ56_001367"
     CDS             9863..10633
                     /locus_tag="IBJ56_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3417624.1"
                     /translation="MFNLYYTALKSLAAKETNRYMRIWVQTLVPPVITTSLYFIIFGK
                     MIGSRIGEMNGFSYMEYIVPGLIMMSVITSSYANVSSSFFSQKFQKNIEEILVAPVPT
                     HIIIWGFLIGGIGRSVLVGALVTLISMVFVPIHIHSWTIGIITFLMTAILFSLAGLIN
                     GIFARSFDDVSIVPTFVLQPLTYLGGVFYAISMLPPIWQAISKVNPIVYMISGFRYGF
                     LGVTDVPVAISLSILVVFSAVLYSICWYLISKGRGLRS"
     gene            10893..11777
                     /locus_tag="IBJ56_001368"
     CDS             10893..11777
                     /locus_tag="IBJ56_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3417625.1"
                     /translation="MMNKENPLNKYHTGKFEKQRQDYPGLQSKMTPVPDTGESSYQGA
                     NKLTGKKAFVTGGDSGIGRAAVIAYAREGADVAINYHPDEEVDAQEVKAIVEEAGQKC
                     VLLPGDLRKEGLAKDLVKKAYNELGGLDILVLNAGLQQYQLDIQKLPAEQLRDTFEVN
                     VFSVVFAIQEALNYLKAGASIILTSSIQGVKPSAHLVDYAMTKSSLISLTKSLAAQLG
                     GKGIRINAVAPGPIWTALQISGGQPQDSIPAFGQDQPLGRAGQPAELASAYVLLASDE
                     ASYTTGQVYGITGGAPIN"
     gene            11795..11971
                     /locus_tag="IBJ56_001369"
     CDS             11795..11971
                     /locus_tag="IBJ56_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2188 domain-containing protein"
                     /protein_id="HAM3417626.1"
                     /translation="MPWTKNDYPDSWKNLRKTEREKAIEIGNALLKDGYSESRAIPIA
                     TSKAEEWYKNHKES"
     gene            12096..12704
                     /locus_tag="IBJ56_001370"
     CDS             12096..12704
                     /locus_tag="IBJ56_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417627.1"
                     /translation="MNKRRWIFSTVVAAFLLIIGGFLVYQQMTPKPFTEVVAEAKIDG
                     YESGDELENASTVIVTGQLEKRGDSIIERASDDAVIGVYRMSTFKIAQVLKNETDDNL
                     AKEMTISVYENEGYDAKANTTYHIAGYTKMEKEEKYLLLLQKDSEDDYYVPTAVIFGK
                     INLNPNKRNELFPKNSDTESAINKVQAEVLKNLENEIERENK"
BASE COUNT         4369 a         2206 c         2850 g         3948 t
ORIGIN      
        1 tttagtctgt aatcgcttat attaatggac taattgggag ttctaagtag atataatggt
       61 ttttagttag gtgcagagat acgcaagaaa acacaggagg gcttgggaca ggtcaaacca
      121 tactacaaag gaggagatgt aattgaagaa gattttacat attgttatcg cacttagtgt
      181 aatttgttcg ataattttag tgccagtaga ttggtccgca aaagcaggcg gtaataataa
      241 gcgagatgat cttattaaat ctgtcagttt ttataattca aatggacaaa atgtaacggc
      301 gaaggaaaac tataatgaaa aactaaatta ttttttagaa gtagcttttg gagggaattc
      361 tttccaaaaa ggggactatt ttaatattac tttatcatct gatgccttac tctatacaga
      421 gaaagcctat gatttgaaag tggatattga cccaacagcg gtaactaatg aacaagtagt
      481 tggtaaagtt actgtagaaa aaattaatgg atcaccaaca ttgcactttg tttttacaga
      541 agattcagag tcttttttta taaacagctt tgatgcgagt tttaaaatac aggtgatgcc
      601 agcgcatggc gataaaaacg ttattaatct ttcctatagt ggcgctgcaa aaaactttaa
      661 aaacattggg acgagcagtg tggaatggaa cgtaaatatg gcagatgact ggccgccagt
      721 tggaattagc gatttttcta aaataagtgg cgatttatac catgcgattt tagtgtatga
      781 aaagccgagt agtaaagtga attacgaaac agaaattttg gtatcgtatc cggttttgaa
      841 aaacgaattc cacttggaaa tgtgcaaaat attaaaattg aagtttggga tgaagcgaag
      901 gagatttata gagttggtgt agccggggtg gattacggaa cgattacata cgatgttgga
      961 actccatttg taggcggtcc tattttccaa atgaattgta ctattccgtt caaagggatt
     1021 tctactaaaa ctcgtgttag ttttgatatt gatacgaatg tggacgggaa acctggaaca
     1081 acagatccgt acttagttag tctttcttcc gtatcatcag ctacaaagtc gctggaattc
     1141 tatccagtga ataacgctga tacgaaaatg acagctgctt tttttgggaa agtaacgacg
     1201 cgctttgagg atgagttagg caatccagtt acttttgata attatagtac tgtaacaaca
     1261 ccagggaaag tcaatcaaga tggtaaattt gaaatagcgg aacctttttt acacaattcc
     1321 gtccaaaacg tggataaaca cgcctatgat acccttttgg atactaataa atataaatta
     1381 ttagaggtaa cttctcctaa taaactatct gaaacagcgg ataatttaag tattcaaata
     1441 aagcgtggtt atcagaatga tgttttatac aaaataaaag ctctccaaaa acctgtcatt
     1501 agcgcgcttc ctgaaatcga atatagtaaa acagtgaata ggaccatgga agagtttttg
     1561 gaagatgtgg aagcaaaaac agatattcca gctgatatag actgtgattt aacgaatgtg
     1621 aaatggggtg ttccggggga ttacctagtt cttataaccg cggtgaatga ggataatcaa
     1681 gcagcggatc ctgttcctgt aacgattaaa atttccaaaa atcccgcacc agtcataacg
     1741 gtagacccgg aaataatcta cgataaaaca gtgacgaaag aggagagcac attactaaat
     1801 gaagtaaatg cgcgaacaaa tgacggttcg acgataactt ctaacattaa cgacaaagta
     1861 aaatggggcg tgccaggcga ttacgaggtt actttgaacg cggtaaatga agacggcgtg
     1921 gcagcggaat cgaaaacatt tatcgtccgc attttaaaaa gcccagcacc aataatcacg
     1981 gtagatcctg aaataaccta tccgaaaaca ataactaaaa cggaagctga actccttcaa
     2041 gaagtaaatg cgcaaacaaa tgatggttca ccgcttgttt ctgatatgaa tgacaaagta
     2101 aaatggggcg tgccaggcga ttatgaagtt acgttaaacg cgataaatga agacggcgta
     2161 gcagcggaat cgaaaacatt tgtcgtccgc attttaaaaa gtccagcacc aataatcacg
     2221 gtagatcctg aaataaccta tgattcttct gtaattaaag acgaaagaga gctattaaaa
     2281 gatgtccatg ctcgttcaag tgacggttcg gtattaactt ctgatagtca ggtaaaagta
     2341 aaatggaaaa aaacaggaag ctataccgtt actttaaatg cagtaaatga agatggcatt
     2401 tctgctaatt ctgtgcaatt cactgtgcat atagtagacg ctaaagcaat accagtagta
     2461 attgaagaaa agcctgaatc cactccaaaa ccagatacta aagaaaaagt agttattaag
     2521 aaagaaaaac taccaaaaac aggagatacg aatacaaaaa ctatattgag tgggattttt
     2581 tgtttaggcg cttggtattt gcttagaaga aaatagacaa aaaccgcaag tgaagtcact
     2641 tgcggttttt ttgccgattg tagcttaaaa ccgctagagt agatataaat tgccaatttg
     2701 aatcattcgc attctagggc ttatttttag aaacgatttt ttcatggata aaagggtata
     2761 gtaacaaaat aggaacgcgg ttaggaaaac ataaacttga tggtggtgaa acaaatggac
     2821 gactggtcaa ctttgatagg cgagctagaa cataataccc cagaaaaagt ttggattgtt
     2881 agagaagaac taaacatatc ggaagtattt gaaatacaaa aattagaggc gcattttatt
     2941 ttagttttag aaggtgtctt gcgtatggaa aatgaacatc aacaaattct gcattatttt
     3001 agggagaata acgtcatata tcaatctcca tatgaattaa gagtacaaaa taaactaaga
     3061 ctagttgctg aaacacctgc tcacattgtt ttactgcacc gtgagttttt ccttaattat
     3121 gcaacaaacc aacctgctta ttctgaaaaa ttagtgcgag caattatgga taatgccgcg
     3181 agttttatgt ttgagttaat gaagaatgac cttaaatcag aggaccgatt ggcttattca
     3241 ttacagcagc tatgccaaag tttagaatta gaagtaaaaa atgagtttta tctactgcct
     3301 cattatatta ataagaataa attggcgctt tatagtgata tttcgaggaa aagtttatac
     3361 aaataccttc aaaatttaga aagaaaagga caaatcaaaa tgaatggtaa tcaaatactt
     3421 gtccgcattt cgcgattcac aaatagcgag aatgtagatt ggttgtagaa caaaaaagcc
     3481 gcaattactg gcaaaattaa taattcgaaa aaacgacaca tgattgatag tatggagtgg
     3541 attttacaca tatttgtcct cttcgccttt gatatacttt acaaatcaag tgagacctat
     3601 acgataatta catcatttag ataacttgaa attgtaaagt tgaaggggca aaaaaaatga
     3661 aattaggtaa agtaggagcc ttacttctcg gtacggcttt agttttccag gcaccattcc
     3721 aagttttcgc aacgagtgta aatggagaag aacaggtgaa aaaagaagct gctgcgccaa
     3781 aaatatccgt taacaagcaa accttagctg ctaccagtga tttagaacaa acggtagggg
     3841 aagcaattac caaaacgata catcttcaag atcaagcatt accaaacaat gaatggggta
     3901 gctatatttc tgacgtgaaa gtaacattat ccaatatgga cggaattagt tatgacgtga
     3961 aatacggacc gctaagtgaa gacggtacgc actatcaata tgcagacata acactttcag
     4021 gagcaccgac aaaagctgga acaggaagca ttagccttga atattacgac ggggcaggta
     4081 acggtggagt ttacagttat tctgtaaaca caaaatctaa aacaactatc caatatgtag
     4141 atggtgatgg aaataaatta gcagaggata cagtgaaaac gggtgattta aatacagcct
     4201 atacctctga accaaaaacg attgatggat atgaagtaga cgaaacaaaa cttcctagca
     4261 atcaaaatgg tcagtttgct gaaacaaatc agacagttac gtacatctac tcaaaaacga
     4321 aaagtgaagt aaataaagga acggtcggta tttcattcta tactcctgat ggtagccgcc
     4381 gggaacttaa gtcctcatta gacttaagtt atgcctaccc agatggtgtc ccaacagaca
     4441 cagtaacatt cggcgattta gcaaaaaata cgacttacaa agatttaaga aatacgcctg
     4501 atgcgcctac tcttttatgg aatgatttgt tacattacat ggtagactac atgaacggcg
     4561 atatagatgc cgctcaattt gaagaggcag ttgggctaac accagcgaat tttgatttag
     4621 attttatttc acgaaatttc gaaggatata aatttgatga agcaatgtat caagaaaatc
     4681 taagtaaatt agtcactttt gagcaagatg gcgatcaagt tgatttgcaa gtaccattta
     4741 agaaagtaga agttggagcg gatatcactg taaaatacat tgacacagaa ggaaacgaat
     4801 tagcatctgt agaaacattg agtggtgatg tggatgataa ctatacttca gaagcaaaaa
     4861 caattgatgg ttggacttta aaggaaacac ctaataatgc aacaggtgtg tttagtaaag
     4921 aggcacaaac ggttacgtat gtttatgaaa aaaatgagga tacagatgtc acaccggctc
     4981 ctgacaattc agcagataca aatgatgaca gtaactcatc agataatact gcgacaacag
     5041 atgataatag cagcagtacg gtgaaagaaa aggcgcaaac acaagcaagt agtccaaagg
     5101 aagaaaaagt aaccacacaa gaaagtactt ctaacaaagt aacaacacaa ccaaaagaat
     5161 ctcttcctaa aacgggagat aacgtgttgg aaagtagctt gttagtgggc ttgggtatgc
     5221 ttttgttagg gggattattt gtattccttc gtaaaactag aaaagtaaaa taaaaaaacg
     5281 cccagtattt gagcgatttc agactgtaga caaagtgaga aatcatttta tctacagtct
     5341 gttttttgaa gttatttatt aaacttcatc atatgcttct aaggcaacag gtagggcgct
     5401 tataacagta tttcctacag ccggtagacc aacgagaacg gcgctaataa tctcatcacg
     5461 cgtcgcaccg tttgtctttg ccattttcac atggaaaggg agcccgcttt ctaagcgagt
     5521 ggcagccata acagcaatgt atgctagttc ttctgttttt ttatcgagtt tacttgcggc
     5581 atctagttta tgtacggttt ccatccaggc agagtgtact tcgggagctt ctttcgcgaa
     5641 cgcttcaaat gatttactta ctttcattga actcatctcc taacttttat tataataaaa
     5701 aaccgcccaa acagtggacg gttttcgtat tatctatttt ctgctttatt ataagcgcca
     5761 tgccaaacag gaccgatgaa ttcgtttagt gcaaatccac ctttgatagc tgcagtgaca
     5821 aagtcttttg cttttgcgac tgcttcttca accgttaaac cttttgcaag tccagctgtg
     5881 attgctgctg cgaaagtaca gccagcgccg tgattgtggc ttggagagat tttttctact
     5941 tcatagatag taaattcttt gccatcatat agtaggtcaa ttgctttgtc gctttctagg
     6001 gcttttccgc ctttgataac tacgtattta gcacctaatt cgatgatttt tttcgctgct
     6061 tttttcatat catctaatgt agttaatttg ccaagaccgg ataattgacc tgcttcgaat
     6121 aggtttggtg ttgtgattgt tgcttttgga agcagtaggt cgcggatagc ttccgcgttt
     6181 tctggttgga ttaattcgtc ttcgccttta caaaccataa cgggatcgat tacgacattt
     6241 tttaaatcat atttgtcgat ggcttcgcgt gttgctttaa tgatgtcaat cgaacctagc
     6301 attccagttt tcattgcgtc aacagggccg ccagaaagga ttgttttaag ttgttcgcga
     6361 acaagttgcg catcaattgg agtaacgccg tgcgcccagt tgttgtctgg atccattgtt
     6421 acaatagttg tgattgcgct aaaaccataa gtgccgtatt cttcaaacgt ttttaagtct
     6481 gcttgtaaac cagcaccacc acttgaatca gaacctgcaa tagttaatgt ttttttgatt
     6541 gtcattcgtg tttcctccta taaataaact ttagtcattt gtttctaaca ttttatagat
     6601 ggctgctgca acgccgtgct catcattcga aagggttacg tgttctgcaa gatctttgac
     6661 ttcttcttcg ccgttaccca tagctacact ataaccagcc atttttaaca tcgaaatatc
     6721 attcatatta tctccaattg caaaagtttc atcaagtgta acgcctaatt tttctacgta
     6781 atattgtaaa gaaatacctt tttgtgcttc gcggtgagtg atttcaatat tatcagagaa
     6841 agaagatgta acggatagtt cggaatcttt ttctagtttt tgtttggctt ttgcaagaat
     6901 gtctttatca gaagagaagg aaatgaattt tagaatggtt aaatctttat tgcctaaaat
     6961 acgctctaca tctggaattt cgtgaacgtc cttggattca aaacgttctt ctactttgtc
     7021 cataatggtt tctgcgggaa cgtctgggtg gatgcgtttg tgcatttcaa tcataaattc
     7081 tttgccacga gctttgtctg ttgtgattgg gcccatgtca gtgaaaaatt cggtatacat
     7141 acctaattca gtcagcgtgt tgtaagtgtt tcttgctagg tttctatcaa tcggatgttg
     7201 caaaattatt ttgccgtgtt catcgcggat ttccgcacca ttcatacaaa ttgctggtgc
     7261 atataaatta gctttattaa ttaaccccat tgcatcgtca tacatacgtc cggtgcaaag
     7321 aacgaaatga attcctttgg cgcgggcttt ttcgattgcc tcgacgtttt cttgtgcaat
     7381 ctcgatatca gagttaagta gtgtgccatc catgtctgaa gcaataactt taatcataat
     7441 attaaattcc tccccaattt tacctactcc actagaatat cattttttta agaaaaatgc
     7501 acaaaaggta gctgcgcgta gttttttagg tggagcgatt actttactat atttctgtga
     7561 ttcatttggt tataatgaat aagaataaaa cgtggatagg atgtgtcagg atgaaaacag
     7621 aactagaaaa gatgattgca ggagaaatgt atgatcctag cgacagagag ctcgcacacg
     7681 gaagaaatcg tgcacgtaag ttctgcagag agattaacga tgcgatggat tcagagtccc
     7741 gtgcaagcgt gctgaagcgc ctattcggcg gaacaaaaga gaatgtatat gtggaacctg
     7801 attttcgtgt tgattacggt tctaatatat atgtaggcga aaatttttat gctaattttg
     7861 attgtgttat tttagatgtt tgcgaagtac atattggtga taattgtatg atggcgcctg
     7921 gagttcatat ttatacggca acgcatccgc ttgatccagt agaacgtaat agtgggctag
     7981 agcttggtaa accagttgaa attggcgata atgtttggat tggtggtcgg gcaattatta
     8041 atccaggggt taagcttgga aataatgtcg tggttgcttc aggcgcagtt gtaacgaaaa
     8101 gcttccccga taatgtcgtt cttgccggca acccagcacg cgttattaaa acaattgagg
     8161 ttgaggaaaa atgattattg cagattcaaa gatttttgaa caaatggaaa acgaattagc
     8221 gaaagcaaaa gcagcaacca caaaagcgag tcaagataag catttgcatg gtttgatgct
     8281 gcttgttcag cttgcaaaaa caggcgatga gacaactgcg gctgtagaac cgattgctat
     8341 tcagtcagca gaaccggcgc aaattgcaag tatggacggg aagaaaatag agttagaaga
     8401 cggcgcgaac ggagactcgt tgcttgattt ttagggggta actatgaaaa aaacaattat
     8461 tacgggagcc acttttgcag ggctggcagt tttactaggg gcttttgggg cacatgcttt
     8521 aaaagacgta cttggaagtt atgcgagtac ttgggaaacc ggcgttcagt accaaatgtt
     8581 tcacgcagga ggcattttag ttgtagggct attgatggaa aaacaagcta gtcggcttta
     8641 cacatgggca gcgattttat tttcggtcgg aattgtcttt ttctcgggta gtttgtatgt
     8701 gttaagtatt tctaaagtat ccattttagg tgcgattacg cctatcggtg gtgtttgctt
     8761 tgtcgttggt tggttcttgc taattttagg agtatcaaga agaacgatga gtagatatta
     8821 aatcaaaata atcgtctttt cgcgttcatt tcagtgaaaa gacgattgtt ttttcttatt
     8881 ggcaaataag tgctaaaata aaggaatcat aatttataag gagacagcaa ttacatgact
     8941 tatgcacttg aaataaaagg gttaagaaaa atttattcca ctggggtcga agcgttacgc
     9001 ggtgtggatt taacggtaga agaaggagat ttttatgcac tgcttggtcc taatggtgcc
     9061 gggaaatcaa cgacgattgg tattattact tcactagtca ataaaacatc tggtcaagta
     9121 agcgtatttg gctatgatct cgatacagat attgtccggg caaaacagca aatcggacta
     9181 gttccgcaag agtttaactt taatccgttc gaaacggttc agcaaatcgt tgttaaccaa
     9241 gctggctatt acggtgtttc tcgtaaggaa gctatcaaac gtagcgaaaa atatttaaaa
     9301 caatcgaatt tgtgggagaa gcggaatgaa cgtgcgcgga tgctctcggg cgggatgaaa
     9361 cgccgcttga tgattgcgcg tgctctcatg catgaaccga agctgcttat tttagatgaa
     9421 ccgactgctg gggtcgacat tgaacttaga cgtgagatgt ggacgttttt aagagagtta
     9481 aacgaaagtg gtacgacgat tattttgacg acgcattatt tagaagaagc agagatgctt
     9541 tgtcgtaata tcggtattat tcaatctggg gagttaattg agaataccag catgaaatca
     9601 ctactttcta aattgcaatt tgaaacgttt atttttgatt tagaaccgta tgaagaagct
     9661 ttcgaaatta cgggttataa tcatgtgttt gaagataagc aaactttgtc tgtggaagtg
     9721 gaacgtaatc agggagttaa ccatatcttt gagcaattaa gcgaacacgg tattaaagtg
     9781 ctttcgatgc gtaataaatc gaatcgcctg gaagaactat tcttgaaaat tacagaagaa
     9841 aaacatcaag tgggggagaa acatgtttaa tctatattat acagctttaa aaagtctagc
     9901 tgcgaaagaa acgaatcgct atatgcgaat ttgggtacaa acactcgtgc cgccagttat
     9961 cacgacttcg ctttacttta ttattttcgg gaaaatgatt ggtagccgca ttggggaaat
    10021 gaatggcttt tcttatatgg agtacattgt gccggggctg attatgatgt ccgtcattac
    10081 tagttcttac gccaatgtat cgtcttcctt tttctcgcaa aagtttcaga aaaacattga
    10141 agaaattctt gttgcgccgg tgccaacgca tattattatt tggggctttt tgattggtgg
    10201 gattggtaga agtgttttag ttggagcact tgtcacgctt atttcgatgg tgtttgtgcc
    10261 gattcacatt cattcgtgga cgattggtat tattaccttc ttaatgacgg cgattttatt
    10321 ttcactcgcg ggacttatta acgggatttt cgctagatca tttgacgatg tatccattgt
    10381 cccaactttt gtcttacaac cgttaacgta tctaggcggc gtattctacg cgatttcgat
    10441 gttaccgcca atctggcaag cgatttctaa agtgaacccg attgtctata tgatttccgg
    10501 attccgctac ggtttcctag gtgttacaga tgtaccagta gcaatttctc tatccattct
    10561 tgttgtattt agtgccgttc tttactcgat ttgttggtat ttaattagta aagggcgagg
    10621 acttcgaagt taatagcgat tttttcaaaa agagagcgga tttccgttct ctttttttca
    10681 tgtttactac aattcttttt caatttgatg ttaaacgttt tagcgtaaaa ctggagggaa
    10741 gacattaagt aatgggggta gtgaaaatgg gaaataaaaa agtgaagcga aaacttggcg
    10801 ctaatatttg gtggatactt atattggcca ttttaataat tttcgtagcc tacttagtca
    10861 tgggttacgt tgcaaaaata taggaggttt ttatgatgaa taaagaaaat ccattaaaca
    10921 aataccatac aggaaaattt gaaaagcaac gccaggatta tcctggtttg caaagtaaaa
    10981 tgacgcctgt tccagatacg ggcgaatcaa gttatcaagg cgcgaataaa ttaaccggga
    11041 aaaaagcctt tgtaacagga ggcgactcgg gaataggtcg agctgcggta attgcctatg
    11101 ctagagaagg tgctgatgtc gcgataaatt atcatccgga tgaagaagta gatgcacagg
    11161 aagttaaagc gattgttgag gaagctggac agaaatgtgt cttattaccg ggtgatttaa
    11221 gaaaagaagg tttagcgaaa gatttagtaa aaaaagcata taacgagtta ggtggactag
    11281 atattctagt gctaaacgct ggactacagc aatatcaatt agatattcaa aaacttccag
    11341 ctgaacaatt acgtgacaca tttgaagtga acgtcttctc cgttgtgttc gcaattcaag
    11401 aagcacttaa ttacttaaaa gcaggggcaa gtatcatttt aacgtcctcc attcaaggcg
    11461 ttaaaccaag cgctcacctt gttgactatg caatgacaaa aagtagttta atttcgctta
    11521 ctaaaagttt agcggcacaa ctagggggaa aaggtattcg aattaatgcg gttgcaccag
    11581 gaccaatttg gacggcgctg caaatttctg ggggacaacc acaagatagt attcctgcat
    11641 ttggtcaaga tcagccactt ggacgagcag ggcaacccgc agaacttgcg agcgcttatg
    11701 tgctactagc atcagatgaa gcaagttata caacgggcca agtatacgga attaccggcg
    11761 gagctcctat taattaaaag cgaggtgaaa gttcgtgccg tggacaaaaa atgattatcc
    11821 ggattcgtgg aaaaatctaa gaaagaccga acgcgaaaaa gctattgaaa tcggcaatgc
    11881 cctattaaaa gatggctact cagaaagccg cgctatccca attgccactt cgaaagcaga
    11941 agaatggtat aaaaatcata aggaatcgta atgtttagat gaaaaaatac ttggaacgct
    12001 aggctttaag tctattgttt caagtgtttt aattttgata aaaaaagtgt actatttaaa
    12061 ttaagagaga tgatgacaac taggaggaac tttttatgaa taaaagaaga tggattttca
    12121 gcactgtggt tgcagctttc ctattgatta ttggaggatt tttagtttat caacagatga
    12181 caccaaaacc attcaccgaa gtagtggcag aagctaaaat cgacggttat gagagtgggg
    12241 atgaattaga aaacgctagt actgtcatcg taacaggtca actagaaaaa cgcggagatt
    12301 caataataga gcgagcttca gatgatgctg tgataggtgt atatagaatg tctactttta
    12361 aaatagccca agttttaaaa aacgaaacgg atgacaactt agcaaaagaa atgacaatat
    12421 ctgtttatga aaatgaaggt tacgatgcca aagcgaatac gacataccat atcgctggct
    12481 atacaaaaat ggaaaaagaa gaaaaatatc tgttgttgtt gcaaaaagat tcagaagatg
    12541 actattatgt cccgacagcg gttattttcg gaaaaataaa cctcaatccg aataaacgaa
    12601 atgaattatt tcctaaaaat agcgacacag aatcagcaat caataaagta caagccgaag
    12661 ttttaaaaaa tcttgaaaat gaaattgagc gagagaataa ataattgtac tctgttgcat
    12721 tttagttaaa ttcgtcatct aattttaata caaaaaaagg gtttggattg ggggagacgg
    12781 gtattatata accataagca atgacaatgc cattactttt tctccctttt ttgtagtggg
    12841 ttgtctttac ttaccttaaa ctccctttta tacttttagc ggttgttagc agccactaag
    12901 agtatttttt tgtaaaaaac actaaataaa tgaaaactcc tcgaacaagg gaaagttcga
    12961 ggagttcggc atttaccaat atttataaat gccactgggg attttctaag tgaacaaaga
    13021 tatggatgtt tgggagagca tccacttgga gaatttacca tagatagata gcgacaagtt
    13081 gtaatgtagt ataaatcata caattcttgt agtgcatcat atatagcact gaattattaa
    13141 attcctgata aactaagaaa agactggaat aaaagtacct catcaagtat atttaattta
    13201 cgcgggattt aaagaggtga tagaaggttg agcaatttta acatcatggg atctttaatg
    13261 cttatagctg ttttagtttt agcagtgtat gttattacca aagtgattac caaattaaaa
    13321 aataagtaga gtttaactaa aatacctcaa taacattttg gggtatttta tat
//
LOCUS       DABQVC010000068        13079 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.068,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000068 DABQVC010000000
VERSION     DABQVC010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13079
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.068"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..532
                     /gene="sipX"
                     /locus_tag="IBJ56_001371"
     CDS             <1..532
                     /gene="sipX"
                     /locus_tag="IBJ56_001371"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I signal peptidase SipX"
                     /protein_id="HAM3417628.1"
                     /translation="GWIKIILIALILAFGIRYFLISPVTVNGKSMDPTLHDGEHLFIN
                     KVSDPKRFDIIVFPAPDEENAEYIKRVIGLPGDKVEYKEDQLYINGKKYDEPYLDSEK
                     EALKNGYLTTDAEGDPNFTMADIPNSDGSLTVPKGELFVLGDNRQVSKDSRYIGFISQ
                     DTVLGKVISFGKSLER"
     gene            567..1136
                     /gene="sipY"
                     /locus_tag="IBJ56_001372"
     CDS             567..1136
                     /gene="sipY"
                     /locus_tag="IBJ56_001372"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase SipY"
                     /protein_id="HAM3417629.1"
                     /translation="MTDQYDKKPKKKSGAHQLLSWVLVIVAALAIALVIRNFVVAPVK
                     VEGTSMVPTYQDGDRIFIEKISKPDRFDIIVFDEPPMIGSGEHFIKRVIGLPGDKIAF
                     KNGELYLNGKRKVENYLPEGTLTLWNPDPTQKPYIADYTLEDMTGESTVPKGKLFVLG
                     DNRGGSSDSRVFGFIDDSMVNGTVIQFGK"
     gene            1238..1780
                     /gene="sipZ"
                     /locus_tag="IBJ56_001373"
     CDS             1238..1780
                     /gene="sipZ"
                     /locus_tag="IBJ56_001373"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase SipZ"
                     /protein_id="HAM3417630.1"
                     /translation="MKEKNLKRLWSWIWAAVLAVLIAVIIRFYLFVPILVDGISMMPT
                     LHSDDRVIINRFGNVDRFDVIVFRESDGKEYIKRVIGLPGDTVEYKEDQLYINGKKYN
                     EPYLDTYKEKLKDGYLTDDYSSKDQLDGGKIPKDTYFVLGDNRRASKDSRIIGPIPFS
                     KVLGTTPICYWPIEDAKLID"
     gene            1790..2653
                     /gene="ylqF"
                     /locus_tag="IBJ56_001374"
     CDS             1790..2653
                     /gene="ylqF"
                     /locus_tag="IBJ56_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HAM3417631.1"
                     /translation="MTIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML
                     EEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEK
                     LMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQW
                     IKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYP
                     DRLQNWLKVETVSEDPIETLAFIAEKRGLLDRYNDPDYSRAAETVVREIRQQKLGRMS
                     FDFPNWEDEVE"
     gene            2650..3435
                     /locus_tag="IBJ56_001375"
     CDS             2650..3435
                     /locus_tag="IBJ56_001375"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HAM3417632.1"
                     /translation="MSDSISVIREKLNQVTSEHDPFFRKCMQDERKGVEKLLETTRRK
                     WEKEAQLRNKLEEMKQYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVV
                     GINDSKQLSEAKRDALFETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLT
                     PEPDFVLIDAMPLRYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYD
                     FANNMGYGTKKHLLGLDTIGICPIHRISFAPVKEAKLHFDSLK"
     gene            3569..4429
                     /gene="dprA"
                     /locus_tag="IBJ56_001376"
     CDS             3569..4429
                     /gene="dprA"
                     /locus_tag="IBJ56_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HAM3417633.1"
                     /translation="MDFKQRHTWLKIASCKSISAKKRASIWQKLTEFDQYEMTTQTFA
                     ESFFPVDKLAQILMELETAEACFFDDVTLIWILDDAYPALLREIYEAPPILFCKGNID
                     LLQQQAIAIVGTRQMSEYGRKACMKIASELAENKLTIVSGMAIGIDSTAHRATLNKQG
                     ATIAVLGSGVNKVYPKKNELLAKEIVKEGLLLSEYLPDEEAKRWHFPERNRIISGLAI
                     GTVIIEAAERSGSLITADIALEQNRQVFAVPGNIFIDTWQGTNYLIQEGAKLVMNSNN
                     IIEEFIQIKP"
     gene            4702..6780
                     /gene="topA"
                     /locus_tag="IBJ56_001377"
     CDS             4702..6780
                     /gene="topA"
                     /locus_tag="IBJ56_001377"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HAM3417634.1"
                     /translation="MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGV
                     DTEHDYEPRYITIRGKGPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQ
                     SDKLRVVFNEITKEAVKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKK
                     GLSAGRVQSIALRIIIDREKEINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKL
                     STADDVKEVMSAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMM
                     LAQQLYEGITLGKQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFSRNHKRSD
                     KNAKGAQDAHEAIRPTSAMRSPQEVKEFLTRDQLRLYRLIWERFIASQMTPAVLDTMR
                     VDLDNNGVNFRANGSKIKFHGFMKVYVESNDDNTEEKENILPDLKKGDKVQSESLEQR
                     QHFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEI
                     VNEMIEEYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADAEME
                     KIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACSRFPDCRNTKAIVKEIGVTCPKCEK
                     GHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERACPKCEKRALVEKKLKKGVQVQCT
                     NCDYKESTQQ"
     gene            6843..8147
                     /gene="trmFO"
                     /locus_tag="IBJ56_001378"
     CDS             6843..8147
                     /gene="trmFO"
                     /locus_tag="IBJ56_001378"
                     /EC_number="2.1.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FADH(2)-oxidizing
                     methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-
                     methyltransferase TrmFO"
                     /protein_id="HAM3417635.1"
                     /translation="MEKSVNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHT
                     DKFAELVCTNSLRANGLTNAVGVIKEEMRILDSIIIEAADKASVPAGGALAVDRHEFS
                     GYITDKVKNHPLVTVHTEEVTTIPEGPTIIATGPLTSPALADEIKQLTGEEYLYFYDA
                     AAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPMSEEEFNAFYEALVTAETAALKEFEK
                     EVFFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDPKTGKRPYAVLQLRQDDAAGTLYNM
                     VGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLF
                     FAGQMTGVEGYVESAASGLAAGINAANFVEEKELVVFPAETAIGSLAHYITSASKKSF
                     QPMNVNFGLFPELETKIRAKQERNEKLAERALNAIKRVAEEL"
     gene            8430..9332
                     /gene="xerC"
                     /locus_tag="IBJ56_001379"
     CDS             8430..9332
                     /gene="xerC"
                     /locus_tag="IBJ56_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HAM3417636.1"
                     /translation="MIQEGKLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFLNEQA
                     ITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVS
                     HAKNQLRLPKFFYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLP
                     DLDTSYQAILIRGKGNKERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYG
                     DPLTTRGIRYCLSKIISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLS
                     STQIYTHVTKEHLKSTYMKHHPRA"
     gene            9353..9892
                     /gene="hslV"
                     /locus_tag="IBJ56_001380"
     CDS             9353..9892
                     /gene="hslV"
                     /locus_tag="IBJ56_001380"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HAM3417637.1"
                     /translation="MELHATTIFAVQHDGKAAMAGDGQVTLGESVVMKHTAKKVRRLF
                     HDKVIAGFAGSVADAFTLFEKFEAKLNEYNGNLERASVELAQQWRSDSVLRKLEAMLI
                     VMDKDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKRHNGGQMEAKDIARHAL
                     EIASEICVFTNDHITVEEL"
     gene            9906..11315
                     /gene="hslU"
                     /locus_tag="IBJ56_001381"
     CDS             9906..11315
                     /gene="hslU"
                     /locus_tag="IBJ56_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HAM3417638.1"
                     /translation="MTNITLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQ
                     LMDESIRDEIIPKNILMIGPTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDV
                     ESMVRDLVEVSVRLVKEEKMQLVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALF
                     GGMNQPDESPEEEVDQELKNKRSQIEWRLQNGELDDEIVTVEVKEQQNPMLDMMRGAG
                     MDQMNGMQDALSGMFPAKKKKRKVTVREAKKILFEDEASKLIDADELAAEGIHRAEQM
                     GMIFIDEIDKIASKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAG
                     AFHMSKPSDLIPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDL
                     IFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENY
                     VNEKLAPIMQNKDLTQFIL"
     gene            11336..12115
                     /gene="codY"
                     /locus_tag="IBJ56_001382"
     CDS             11336..12115
                     /gene="codY"
                     /locus_tag="IBJ56_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HAM3417639.1"
                     /translation="MTLLEKTRKINAMLQNAAGKTVNFKEMADTLTDVIEANTYIVSR
                     KGKLLGYSEALPIENDRMKQMLTERQFPEEYTQSLFNVGETSSNLEVSSQYTAFPIEN
                     SELFTKGLTTIVPIVGGGERLGTLILSRLESNFTDDDLLLAEYGGTVVGMEILHEKAE
                     EIEEEARSRAVVQMAISSLSYSELEAIEHIFDELNGKEGLLVASKIADRVGITRSVIV
                     NALRKLESAGVIDSRSLGMKGTFIRVLNDKFLVELEKLKNN"
     gene            12218..12637
                     /locus_tag="IBJ56_001383"
     CDS             12218..12637
                     /locus_tag="IBJ56_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HAM3417640.1"
                     /translation="MEIAETTIEVRYAETDQMGVVYHNNYLVWMEIGRTRLIEKLGFR
                     YFDMEEAGYLSPVLDVHIHYGKPLRYGQKAVVKTWIKGYDGLRVTYGYEICYEDTNEV
                     AITGETQHVCVTKEDFRPVSLRRTFPNWHEAYLKALE"
     gene            12660..12971
                     /locus_tag="IBJ56_001384"
     CDS             12660..12971
                     /locus_tag="IBJ56_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417641.1"
                     /translation="MAFGVKRDEMELWKEKAARGEIAIITHYWLDDRFPESKTVTKVA
                     CVDLKKLQQWGKQYGLAPDWIDNRRKNFPHYDLFGEMQLVVLKKEKAFEQIERFHLEE
                     K"
     gene            12974..>13079
                     /locus_tag="IBJ56_001385"
     CDS             12974..>13079
                     /locus_tag="IBJ56_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HAM3417642.1"
                     /translation="MIKLENEVLLVEMKTAGAELTRIFHKDTGLEYLWN"
BASE COUNT         4618 a         2094 c         2797 g         3570 t
ORIGIN      
        1 tggatggata aaaataattc tcatcgcgct tatacttgct tttggtattc gctatttttt
       61 aatttctcca gttactgtta atgggaaatc aatggaccca acacttcatg atggggaaca
      121 tttatttatt aacaaggtat cagatccgaa gcgttttgac attattgtat ttcctgcgcc
      181 tgatgaggaa aatgcagagt acattaaacg cgtcattggc cttccaggag ataaagtgga
      241 gtacaaagaa gatcaacttt atattaatgg aaaaaaatat gatgaacctt atttagattc
      301 agaaaaagaa gctctaaaaa acggttattt aaccactgat gcagaaggcg atcctaattt
      361 tacgatggca gacattccaa actctgacgg ctctctcact gtccctaaag gagaactttt
      421 tgttttagga gataatcgtc aagtaagtaa agatagtcgc tacattggct ttatatcaca
      481 ggataccgtg cttggaaaag taatttcatt tggaaaatcc ttagaacgtt aatgtgaccc
      541 tacaggaagt ctaggaggag acatagatga cagatcaata tgacaaaaag cccaagaaaa
      601 aaagcggggc gcaccaatta ttaagctggg tgctagttat cgttgcagcg cttgcaattg
      661 cacttgtgat tcgtaacttt gtagttgcac cagtaaaagt agaaggaaca tctatggttc
      721 caacatatca agatggcgat agaattttca ttgaaaaaat ttccaagcct gatcgtttcg
      781 acattatcgt gtttgatgaa cctccaatga ttggttcagg agagcatttc atcaagcgag
      841 tgattggttt gccgggagat aaaatagcat ttaaaaacgg tgaattatat ttaaatggaa
      901 aacgaaaagt agaaaattac ttgccagaag gaacattaac cctttggaat ccagatccaa
      961 cgcaaaaacc atacatagcg gattatacgc tggaggatat gacaggcgaa agtactgttc
     1021 cgaaagggaa actatttgta cttggagata atcgcggcgg gagttcagat agtcgcgttt
     1081 tcggatttat tgatgattcc atggtaaacg gtacagtgat acaatttgga aaataatgtg
     1141 aagtccgtga agatactttt tcgcggattt ctctattaaa tgagcgtttt ttcgtttata
     1201 ataagactgt tagtataaaa tagggcggtg cgattttttg aaggagaaga atttaaaacg
     1261 gttatggtca tggatttggg cggctgttct agcagtgtta atagctgtta taatccgttt
     1321 ttatttattt gtccctattc tcgtcgatgg gatatcaatg atgcctacac ttcatagcga
     1381 tgaccgtgta attataaatc gcttcggaaa tgtagatcgt ttcgatgtga ttgttttccg
     1441 agaatcagat ggaaaagaat acatcaagcg agtgatcggt ttgccgggtg atacagtaga
     1501 atacaaagaa gaccaacttt acatcaatgg taaaaagtat aatgaaccat atttggatac
     1561 ttacaaagaa aagttaaaag atggctattt aacagatgat tacagttcga aagatcaact
     1621 agatggtggc aaaattccaa aagatactta ttttgtttta ggtgacaatc gaagagcaag
     1681 caaagacagt cggataattg ggccaattcc atttagcaag gtgttaggaa caacaccgat
     1741 ttgttactgg ccgattgaag atgccaaact tatagattag gagtatataa tgacaattca
     1801 gtggtttcca ggtcatatgg ccaaagctcg ccgtgaggta acagaaaaat taaaactagt
     1861 agatgtgatt tttgaattgg tagatgcgcg tatcccgctc tcttcctcta atcccatgct
     1921 agaagaaatt atccaccaaa aaagacgagt gattatttta aataaagcag atactgccga
     1981 tgaaaaaaca acaaaagaat ggattgacta ctttgctgag aaaggcttgc cagcagttgc
     2041 tgtgaatgct caagaaggta aaggactatt caaaatagaa caagccgccg aaaaattaat
     2101 ggctgaaaaa ttcgaccgtt taagaagtaa aggtatgaag ccaagagcaa ttcgtgcgat
     2161 gattttaggt attccgaatg ttggtaaatc aacattaatc aatcgactag cgaaaaaaaa
     2221 tattgcacgg acaggtaata aacctggtgt aactaaagca cagcaatgga ttaaagtggg
     2281 aaaaacatta gaacttctgg atacaccagg gattctttgg cctaaatttg aagatcaaga
     2341 aattggctac aaattagctc ttactggtgc aattaaagat gatttactac aaatggaaga
     2401 aatcgctggt tacggtttgc gctttttaga aaaacattat cccgacagac ttcaaaactg
     2461 gctgaaagta gagacagtct ctgaagatcc tatcgaaaca cttgctttta ttgctgaaaa
     2521 aagagggctt ctagatcgat acaatgatcc agattattct cgcgcagccg aaacggtagt
     2581 tcgagaaatt cgtcagcaaa agttagggag aatgtcgttt gatttcccaa attgggaaga
     2641 tgaagtcgaa tgagcgattc catatccgtt atccgagaaa aactaaacca agtcacatca
     2701 gaacatgatc ccttttttcg gaaatgcatg caagatgagc gtaaaggtgt agaaaaactt
     2761 ctggaaacta caaggagaaa atgggaaaaa gaagcgcaat tacggaacaa gcttgaagaa
     2821 atgaaacaat atgaaacaga tttattccaa caaggataca agtatatcgc tggagtggat
     2881 gaagtgggac gtgggcctct cgcaggacca gttgtagcag cagccgtcat tttaccagct
     2941 gatttttctg ttgtcggaat aaatgattct aaacaattga gtgaagcaaa acgtgatgct
     3001 ttgtttgaaa cgataaaaaa agaagcaatt gctatcggag tagggattat agaacatgat
     3061 gtaattgatc aagtaaatat ttatgaggca acgaaacttg ctatgcgtga agcgttagat
     3121 caattaacac cagaacctga ttttgttcta atagatgcaa tgccactaag atataccgag
     3181 gcagaactat ctcttatcaa aggggataca aaaagcattt cgattgctgc agcgtctatc
     3241 atcgcaaagg taacaagaga tagattaatg cagatgtacg atgaaaagta tcccgggtat
     3301 gattttgcaa acaatatggg ctacggcaca aaaaaacatt tacttggttt agatacaatt
     3361 ggtatatgtc ctatccatcg tataagtttt gcgcctgtaa aagaagcaaa gttgcatttt
     3421 gatagtttaa aataactaaa tcatatagag aaaaacgtat tttcaacatg gaaaatacgt
     3481 ttttttatgc cgttttatag gttttggtca ttttacaaaa aagctcaatg tttgtacact
     3541 gggagtaact attagggagg tgcaacagat ggattttaaa caacgacata catggctcaa
     3601 aattgcttct tgtaagtcta tttctgctaa aaaaagagcc agcatttggc aaaaattaac
     3661 agaattcgac cagtatgaaa tgacaacaca aacatttgca gaatctttct ttcctgtgga
     3721 taaactcgca cagattctaa tggagctaga gacagcagaa gcgtgctttt ttgatgatgt
     3781 taccttaata tggattttag atgatgccta tccagcgctt ttaagagaaa tttatgaagc
     3841 gccgccaatt ttattttgta aaggaaatat tgatttatta caacaacaag caattgccat
     3901 cgttggtaca aggcagatga gtgaatatgg taggaaagct tgtatgaaaa ttgctagtga
     3961 acttgctgag aataagctga ctatagttag cgggatggct atcggaatcg actctacagc
     4021 ccatagagcc actttaaata aacaaggtgc aacgattgca gtactaggtt caggtgtcaa
     4081 caaagtttat ccaaagaaaa atgaacttct agcgaaagaa attgtcaaag aaggtttgtt
     4141 attaagtgag tatttacccg atgaagaagc gaaaagatgg cattttccag aaagaaatcg
     4201 aattattagc ggcttggcta taggaacagt aataatagaa gctgccgaaa gaagcggttc
     4261 gttgattact gctgatatag ctttagaaca aaacagacaa gtttttgctg ttccaggaaa
     4321 tatttttatt gatacatggc aggggacgaa ctatttaatt caagaaggtg ccaagttagt
     4381 tatgaattcg aacaatataa tagaagaatt tattcaaatt aagccataaa tatactgaaa
     4441 ttatcttttt taagtgattt gacttgcatt tcctgatttt ttgagataag tttgctaaag
     4501 aaagctgata taaaacatca aaaaatggac tttttcataa aagccattga caaacccagt
     4561 aggaagggct aatatttact actgaattat gtgaacaatc agcattgaaa acttattgaa
     4621 cgcgaggcta agactgtaat aggattaaga caacgagtaa agcccgtgta ttgacccaaa
     4681 tcagggagga atataataga tatggcagat tatttagtga ttgtagagtc acctgcaaaa
     4741 gcaaaaacaa ttgaaaagta tttaggtaag aaatttaaag tgaaagcctc aatgggacat
     4801 gttcgtgact tacctaagag tcaaatgggt gtagacacag agcatgacta cgaacctcgt
     4861 tatattacga ttcgcggaaa aggccctgtt ttaaaagaat taaaacaagc agccaaaaaa
     4921 gcgaaaaaag tctatctcgc agccgatcca gaccgcgaag gagaagcaat tgcatggcac
     4981 ttagccaata gcctagagtt agatcaatca gacaaactac gtgtagtatt taacgaaata
     5041 acgaaggaag cagtaaaaga atctttcaaa acaccacgta aaattgacat ggatttagtc
     5101 aatgcgcaac aagcacgcag aattttggac cgtttagttg gatataatat cagccctatt
     5161 ctatggaaaa aagtgaagaa aggtttgagt gcggggcgtg ttcagtctat cgcacttcga
     5221 atcattattg atagagaaaa agaaatcaat aatttcaaac ctgaagaata ctggacaatt
     5281 gacggtaact tccttaaagg gaagaaaaaa ttccaagcca atttttatgg tgtaaatggt
     5341 aaaaagaaaa agctttccac tgcagatgat gtaaaagaag taatgtctgc aataaaagga
     5401 aaatcatttg acgtaacaga tgtaacgaaa aaagaaagac ttagaaatcc agctgcacca
     5461 ttcactactt caagtttgca acaagaagca gctcgaaaac taaattatcg tacaagaaaa
     5521 acaatgatgc ttgcccaaca attgtatgaa ggaattacac ttggtaaaca agggacagtc
     5581 ggcttaatta cgtatatgcg tacagactcc actcgtattg ccgattccgc tatactagaa
     5641 gcaagcaatt acattaaaga aacctatgga cccgaatttt ctcgtaatca taaacgttca
     5701 gataaaaatg ctaaaggtgc tcaagatgcc catgaagcaa tcagacctac aagtgcaatg
     5761 agaagtcctc aagaagtaaa agaattttta acacgggacc aacttcgctt atatcgtttg
     5821 atttgggaaa gatttatcgc gagccaaatg acgccagcag ttcttgatac aatgcgcgtt
     5881 gacttagaca acaatggcgt gaacttcaga gcaaatggct ctaaaattaa attccacggc
     5941 ttcatgaaag tctatgtaga aagtaacgat gataatacgg aagaaaaaga aaatatctta
     6001 ccagatttga aaaaaggaga taaggtacag tccgaatcac tcgaacagcg acaacatttc
     6061 acacagccac ctccacgtta cacagaagct agattagtaa aaacgctcga agaaattggt
     6121 attggtcgac catcaactta ttcgccgaca ctcgacacaa ttcagcgcag aaattatgtt
     6181 tctttaacga ataaacgctt tattccaact gaattaggtg aaatcgttaa tgaaatgatt
     6241 gaagaatatt tcccagaaat tttagatgtt aaattcactg ccaatatgga aagtgagctc
     6301 gatgaagtag agcacggaga agtcgaatgg gtgaaagtca ttgatgaatt ttataaacga
     6361 tttgaaccaa atgttataaa agcagatgca gaaatggaaa aaatcgagat taaagatgaa
     6421 ccagccggaa ttgactgtga tctttgtgga gctccaatgg tttacaaaat gggtaaatac
     6481 ggtaagttcc tagcttgtag cagatttcct gattgtcgta atacgaaagc aatcgtgaaa
     6541 gaaatcggcg ttacgtgtcc gaaatgtgag aaaggacatg taatagaaag aaaaagtaag
     6601 aaaaagcgta ttttttacgg ttgtgatcgt tatccagatt gtgactatgt atcatgggat
     6661 aaaccggtcg aacgggcttg tccgaaatgt gagaaacgag cattagtcga gaagaaattg
     6721 aaaaaaggtg tacaagtaca atgtacaaat tgtgattaca aagaatcaac ccaacaataa
     6781 tcggaaaatg gcaacacttg gatcgttctt gtgttgccat tgttgcgcga ggaggcggac
     6841 aaatggaaaa gagtgttaat gtaattggag caggtttagc aggaagtgaa gcagcatggc
     6901 agttagtaaa acgtggggta aaggtggatt tatacgaaat gagaccggta aaacaaactc
     6961 cggcacatca tacagataaa tttgcagagc tagtatgtac gaattccttg cgagctaacg
     7021 gtctaacgaa tgctgtagga gttattaaag aagaaatgcg gatacttgat tctattatca
     7081 ttgaagccgc tgacaaagca tctgtaccag ctggaggggc acttgcggtt gatcgacatg
     7141 aattttctgg ttatattaca gacaaggtga aaaatcatcc actcgtaaca gtgcatacgg
     7201 aagaagtaac tactattcca gaaggtccaa caattattgc gaccggtcca cttacaagtc
     7261 ctgcgcttgc tgatgaaatt aaacaattaa caggggaaga gtatctttac ttttatgatg
     7321 cagcagcacc aataattgaa aaagatagca ttgatatgga taaagtttat ttgaaatccc
     7381 gctatgataa aggagaagct gcttacttaa actgcccgat gtcagaagaa gaattcaatg
     7441 ctttttatga agcattagta acggctgaaa cggctgcttt aaaagaattt gaaaaagaag
     7501 tgtttttcga aggatgtatg ccaatcgaag taatggcaaa acgcggaatt aaaacgatgt
     7561 tatttggtcc attaaagccc gttggtttgg aagatccaaa aactggaaaa agaccttatg
     7621 ctgtgttgca acttagacaa gatgatgcag cgggaacact ttacaacatg gtaggtttcc
     7681 aaacgcacct taaatggggt gagcaaaaac gtgttttcgg aatgattcca ggacttgaaa
     7741 atgctgaaat tgtacgttat ggtgtaatgc accgtaacac atttattaac tcaccaactg
     7801 tacttgaacc aacttaccaa ctgaaaacac gcaatgattt gttctttgct ggacaaatga
     7861 caggtgtaga gggatatgtt gaatccgcgg ctagtggact tgcggcgggg attaatgcgg
     7921 ccaattttgt agaggaaaaa gaactagtgg ttttcccggc agaaacggcg attggtagtc
     7981 tagcccatta cattacgagt gctagtaaaa aatcgttcca accaatgaat gttaattttg
     8041 gactcttccc agagcttgaa acaaaaattc gtgcaaaaca agaacgtaat gaaaaattag
     8101 ctgaaagagc gctaaatgca ataaaaaggg ttgcagaaga actataaaaa cactataata
     8161 attgaggact attctttgct gttcttttca tcacgatggc tactttggta tttcaagaga
     8221 gttgatagtg gtggaaagac agtttttctt tccgataaat ggtctagaca gattttgtta
     8281 ataaatgttg gttttttcac aaaagttaag tgttttattt aaattgattg taaatgcaga
     8341 ttaattcaaa aagttgcgaa aaatgtataa aattattgca acgtggatat tgatatgtta
     8401 acatgatagt gtttgagagg tgtatacgta tgatacaaga ggggaagtta gagcaacagt
     8461 tctttgacta tcttcactca gaacgtaatt attcagtgaa cactagtaca gcttatgaaa
     8521 atgatttact tgattttcgc cgctttttaa atgaacaagc tattaccaca tatcagcaag
     8581 ttacttttct agatgtgcgt atttatttga cggaattaaa gcaaaaatct ttttctcgta
     8641 caaccgtagc tagaaaaatt tcaagtttac ggagttttta cacttttctt ttaagagaga
     8701 atgttattaa cgaaaatccg tttacttacg tatcacatgc gaaaaatcag ttaaggcttc
     8761 ccaaattttt ctattcagaa gaaatggaag ctttgtttca agtggtctat gaagataatg
     8821 aaacgcttac attgcgagat agagtgcttt tagaggtgtt atatggtacg ggaattcggg
     8881 tgagtgaatg tgctggaata ctgttgcctg acttagatac atcttatcaa gccatcctca
     8941 tacgcggaaa agggaataaa gaacgatatg tgccattcgg ggtgtatgca gaagatgcga
     9001 ttacagatta tttgccagaa cgtgccaatc ttatgtctcg ctataaaaag tcacatgatg
     9061 ctttacttgt gaatcattac ggtgatcctt tgacgaccag gggcattagg tattgcttgt
     9121 cgaaaataat tagtaaagct tcattaactc ggaaaattca tccgcatatg ttacgccaca
     9181 cgtttgcaac agacttactt aataacgggg cggatatgcg gacggtacaa gagttacttg
     9241 ggcacgctag cttatcatcc acccagatct atacgcacgt gacaaaagag catttaaagt
     9301 ctacttatat gaaacatcat cctagggctt aaatttggag gaggttaaag aaatggaatt
     9361 gcacgctaca acgatatttg cggttcaaca tgacggaaaa gcagcgatgg ctggagacgg
     9421 tcaagtgacg cttggtgaat cggtcgtaat gaaacatacc gccaaaaaag ttcgccgtct
     9481 ttttcatgat aaagtaattg ctggatttgc aggttcagtc gcagatgctt ttactttatt
     9541 tgaaaaattt gaagcgaaat tgaatgaata taatggtaac ttagaaagag catcagtcga
     9601 acttgctcaa caatggcgca gtgacagtgt tttaagaaaa ttagaagcta tgctaatcgt
     9661 gatggacaaa gatacactac ttttagtttc agggacagga gaagttattg aaccagacga
     9721 tggtatttta gctatcggtt ctggaggtaa ttatgcgcta gccgctgggc gagcacttaa
     9781 aagacataat ggtggtcaaa tggaagcaaa ggatatcgct cgtcatgcgc tagaaatcgc
     9841 ttctgaaatt tgtgtgttta caaatgatca tattacagta gaagagcttt gaaggagtgg
     9901 ttaatttgac aaatataacg ttaatgaacc agttgacacc aaagcaaatt gttgaaaaac
     9961 tggatcaata tattattgga caaaccggag cgaagaaatc agttgcagta gcactaagaa
    10021 atcgttaccg tagacaacta atggatgaat caatccgtga tgaaattatt ccgaaaaaca
    10081 ttctgatgat tggaccaaca ggtgttggta aaacagaaat agcacgtcga attgccaaaa
    10141 ttgttcgtgc tcctttttcc aaagtagagg ctactaaatt cacggaagtt ggctatgtcg
    10201 gtcgcgatgt agaatcaatg gttcgtgact tagtggaggt atctgttcgt ttagtaaaag
    10261 aagaaaaaat gcaattagtt cgtgttaaag cagaaaaaaa tgcagagaaa cgtctgatta
    10321 aacttttagc gccaagccaa aagaaaaaac aaacaacatc gcaaaatccg ttagaagcgc
    10381 ttttcggcgg catgaatcaa ccagatgaat ctcctgagga agaagtagat caagaattaa
    10441 agaataaacg tagccaaatt gaatggcgtc tacaaaacgg cgagcttgat gatgaaatag
    10501 taacagtaga agtaaaagaa cagcaaaatc caatgcttga tatgatgcgc ggcgctggaa
    10561 tggaccaaat gaatggtatg caggatgcgc tttcgggcat gttcccagcg aaaaagaaaa
    10621 aacgcaaagt aaccgtacgt gaagcgaaga aaattctttt tgaagatgaa gcatcaaaat
    10681 taattgatgc agatgaactt gcagcagagg gcattcatcg tgcggaacaa atgggtatga
    10741 tttttatcga tgaaattgat aaaattgcta gtaaagaagg cggcggaaat gcacaagttt
    10801 cgcgggaagg cgtccaaaga gacattcttc caatcgtgga ggggtcgcaa atttctacta
    10861 aatatggtac agtcaacacg gagtacattt tatttatcgc agcaggggct ttccatatgt
    10921 ctaaaccaag cgatttaatt ccagagcttc aaggccggtt cccaattaga attgagctgg
    10981 ataaattaac tcaagaagat ttctacaaaa tcttaacaga accagacaat gcactaatta
    11041 aacaatacaa agctttactg aaaacagaag gaattgactt gattttcacc aaagaagccg
    11101 tagaaagaat tgccgagatt gcattccaag ttaatcaaga ttcagataat atcggagcaa
    11161 gaagacttca taccatttta gaaaaattac tagaagattt actatttgaa gcaccagaaa
    11221 tcaatatgga atctattaaa gtaacagaaa actatgttaa tgaaaaactt gcaccaatta
    11281 tgcagaataa agatttaaca caatttattt tataaaatac taggaggatc taataatgac
    11341 tttattagaa aaaacaagaa aaattaatgc tatgttacaa aatgctgcag gaaaaacagt
    11401 aaacttcaaa gaaatggcag atacacttac agacgtcatt gaagcaaaca catatatcgt
    11461 aagccgtaaa ggtaaattac ttggctattc tgaagcactt ccaatcgaaa atgatcgtat
    11521 gaaacaaatg ctaacagaac gccaatttcc agaagaatat acgcaaagcc ttttcaatgt
    11581 aggcgaaact tcttctaact tagaagtatc aagccaatat actgcttttc caatcgaaaa
    11641 cagtgaatta ttcacaaaag gtttaacaac tatcgtacct atcgtaggtg gtggtgagcg
    11701 tcttggaaca cttatcctat ctcgcttaga aagcaatttc actgatgatg atttactttt
    11761 agcggaatat ggtggaacag ttgttggaat ggaaatcttg catgaaaaag cagaagaaat
    11821 tgaagaagaa gctcgtagcc gtgccgttgt gcaaatggcg attagctctc tttcttacag
    11881 tgagttagaa gctattgagc atattttcga tgagttgaat ggtaaagaag gtcttcttgt
    11941 tgcctctaaa atcgcggacc gtgtcggcat tacacgttct gtaatcgtaa atgcacttcg
    12001 taaattagaa agtgcaggcg ttattgattc tcgctcacta ggaatgaaag gtacatttat
    12061 ccgtgtactt aatgataaat tccttgtaga actagaaaaa ttgaaaaaca actaaaaaaa
    12121 gtagaaaagc tttctctgaa aatattcggg gagagctttt tttggtttgc tttggtaaaa
    12181 taagaaagta gaacttgtgt gactggagga atttagaatg gaaatcgctg aaacaaccat
    12241 tgaagtacgc tatgcagaaa ccgatcaaat gggcgttgtt tatcataaca attaccttgt
    12301 atggatggaa atcggccgaa caagattaat tgaaaaatta ggttttcgtt attttgatat
    12361 ggaagaggct ggttatcttt ctccggtatt agatgtgcat attcattacg gaaaaccact
    12421 gcgttacgga cagaaggcag ttgtaaaaac atggataaaa gggtatgatg gacttcgtgt
    12481 tacttatggt tatgaaattt gctatgaaga tacgaatgaa gtagccatta caggagaaac
    12541 acagcatgta tgtgtaacga aagaagattt ccgccctgta tcgttaagaa gaacatttcc
    12601 gaattggcat gaagcctatc taaaagcttt agaataaata agactggtag tgataaaaaa
    12661 tggcttttgg tgtaaaacgt gatgaaatgg agttatggaa agaaaaagca gcccgtggag
    12721 agattgcaat tatcacccat tattggctag atgatcgctt tcctgaatca aaaactgtaa
    12781 ccaaagttgc atgtgtagat ttgaaaaaac tacaacaatg ggggaaacaa tatggtttag
    12841 ccccagattg gattgataac cgtcgaaaaa actttccgca ttatgatttg tttggcgaga
    12901 tgcaactcgt tgtactgaaa aaagaaaaag cctttgaaca aatcgagcgg tttcatttgg
    12961 aggagaaata acaatgatta aactggaaaa tgaagtattg cttgtagaaa tgaaaacagc
    13021 tggagcagaa ttaacgcgaa tcttccataa agataccgga cttgagtatt tatggaatg
//
LOCUS       DABQVC010000069        12997 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.069,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000069 DABQVC010000000
VERSION     DABQVC010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12997
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.069"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            89..514
                     /locus_tag="IBJ56_001386"
     CDS             89..514
                     /locus_tag="IBJ56_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HAM3417643.1"
                     /translation="MTQKLIYFLSQTHIRSAIAEAWAKRLSLSNVKFISGSWHKSKST
                     PFIAEALNEFAIEPPESLSYSPSSELLADADLIVTIYDSAHETAPKFPANIQEKIIYW
                     DIDDPEQEIALPKKWASYQEVCDNIALSVKNLEHVLIEA"
     gene            578..1447
                     /locus_tag="IBJ56_001387"
     CDS             578..1447
                     /locus_tag="IBJ56_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HAM3417644.1"
                     /translation="MDGYNDLKKAEKAAFLSIFAYLFLAVLKIVAGQLGNSDALLADG
                     LNNTTDIVASVALLIGLRISRIPPDADHSYGHRRTETISSLIASIIMFLVGVQVIWSS
                     IVHIIEKEFATPSMLTAVVALFSGVFMYAIYLYNHRLAKKLDSQAVRAAAYDNRSDAF
                     VSLGAFIGIIGAVLGVPWLDSVTAFLVGILIVYTAIKIFYDAAHTLTDGFDVSKLETI
                     HDLIASVPDVKKVIDIKARMNGNKIWIDATIAVDPELNVVKSHAITEIVEQKIRNEYE
                     GAFTLVHIEPFFE"
     gene            1703..3007
                     /locus_tag="IBJ56_001388"
     CDS             1703..3007
                     /locus_tag="IBJ56_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAM3417645.1"
                     /translation="MILTIKFLIIALLIAISAFFVATEFAIVKMRPSRLDQLIAEKDK
                     RAVLARHIYNHLNAYLSACQLGITISSLGLGWLGESTVEAALHPLFSLMELPQSAITI
                     LSFTIAFLFITFLHVVVGELVPKTLAIDKTEAVALAVARPLHIFYKVMFPFIWILNGS
                     AVFIARLFGLEPASEHEIAHTEDELKIIVGESYKSGEINQSEFRYVNKIFDFDERMAK
                     EVMIPRTEIVTVDTGSTIGELSDIMQNERYTRYPVIDGDKDHVIGVLNLKEILSAYVE
                     HGSNPSFSIDPYVKPIIRVIETIPIKELLFRMQRERSHIAILLDEYGGTSGLVTVEDI
                     VEEIVGDIRDEFDADEIPEIRKIKDGHFIVDAKLLIDEVNNILGTEIEEEEVDTIGGW
                     FLTQNYEVEVGDEIDYDGFIFRVKQGEPHHIEYIEIIKKTND"
     gene            complement(3048..3926)
                     /locus_tag="IBJ56_001389"
     CDS             complement(3048..3926)
                     /locus_tag="IBJ56_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3417646.1"
                     /translation="MNLHHLRYFVTLAHMEHYTKAAEKLLITQPSLSHAISSLEQELG
                     IPLFEKEGRNIGLSKAGKVFLDYVEESLDMIDAGVATTKKAANGEGQIDLAFLQTLGT
                     SLIPKLVQEFLQTEPEKQIDFIFHTGVSIDIIQGLKEKKFDIGICSKLENERNIHFTP
                     IAKQELVLIVPKSHPLAEKDWIDLIETVDYPHIAFSKKSGLRPIIDDLFRKIGADYQI
                     AYEIEVDQVIAGMVAQNFGIAVVPNMPILNYVDVKVLPIRSPNWERFFYLAVAKNQTL
                     TPAAEKFKQFMLAHRI"
     gene            4227..5081
                     /locus_tag="IBJ56_001390"
     CDS             4227..5081
                     /locus_tag="IBJ56_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HAM3417647.1"
                     /translation="MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGLR
                     AENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQWGTAEDRTAEQQKKEQTTFHMA
                     RLFGVKHINCGLLEKIPEEQIIVALGELCDRAEELIIGLEFMPYSGVADLQAAWRVAE
                     ACGRDNAQLICDTWHWARANQTAESIKNVPADRIVSIQLCDVHETPYKELREESLHDR
                     LAPGEGYGDTVGFAKILKEHGVNPRVMGVEVISDSMVATGLEYAALKVYNATKKVLDE
                     AWPEISPR"
     gene            5150..7075
                     /locus_tag="IBJ56_001391"
     CDS             5150..7075
                     /locus_tag="IBJ56_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAM3417648.1"
                     /translation="MKFNSMFSPIDIGPMKVPNRFVVSPMCNNYANTDGTLSDTSLAY
                     YKERALGGFGLITFEATVVDVRAKGGANKACLYSDHQIASFKRVIDVCHDAGAKISVQ
                     LQHAGPEGNSKVSGYPLRAASAIASAAGRNTPEAISREELYELIELYGEAALRAKKAG
                     ADAVEVHCAHGYLVSSFLSARTNKRVDEFGGCFENRMRLPRLIIESIRKRVGHSIAIL
                     CRINSTDGVEGGLSVQDSATVAAYLEDCGLDGLHVSRSVHIRDEYMWAPTVLHAGFSS
                     DLVTQIKRAVSIPVITVGRFTEPHYAELMVREGRADLVAFGRQSLADPETPNKAAAGK
                     LDELLPCIACLQGCVANMYAGKPITCLVNPLLGRESEAYSPKTPSKKVVVIGGGVGGL
                     YAGWMAGSRGHDVTVYEASDMIGGQMRLAAYPPGKGDLTNMVRSYIKKCEQFDVEIKT
                     NTPVTPELIQEVAPDAVIIATGATPLVLPIPGIEDAGLIHAVDLLDGKEKCGQKVLVV
                     GGGMVGSETAAFLGEAGHDVTVVELRDEVGADVISEHRKFLMRDFDEYKIKSVTNAKV
                     TSFFEDGVTYSLADNKEHRIDGFDSVVLAMGSRAYNPLEEAIKKMVPETYVIGDAIRA
                     RRALDATKEALDAVLQL"
     gene            7134..8003
                     /gene="aroE"
                     /locus_tag="IBJ56_001392"
     CDS             7134..8003
                     /gene="aroE"
                     /locus_tag="IBJ56_001392"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HAM3417649.1"
                     /translation="MENRISGTTRLLGLIGTPVDHSKSPIMYNYSFQKAGLDYAYLAF
                     DTPIEKVADTIKAIKTFNLRGANVTMPCKSEVLKHMDDLSPAARMIGAVNTIVNEDGK
                     LTGHITDGLGFIANLRDASVDVTGKKMTIIGAGGAATAIQVQCALDGAKEITIFNIKD
                     AFYDKAKQTAASIKQEVPNCIVHIYDLNDTEKLNAEIATSDILVNATLVGMHPNEHET
                     PISDTSVFRKELIVADIIYNPKKTQLLLDAEAAGCKTVGGLGMLLWQGAEAYKLFTGK
                     DMPVSEVKNLYFN"
     gene            8036..9244
                     /locus_tag="IBJ56_001393"
     CDS             8036..9244
                     /locus_tag="IBJ56_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3417650.1"
                     /translation="MNAKRFYPTAIALYFTYFIHGIGVSILGQYKQDFAGVWGADKLS
                     DGTFDVSMVIAVIAALGLGRLLTLPISGPFSDKFGRKPSALIGVALYAVYFIGLAFAP
                     NMYIAYAFAFVGGAANSFLDTAVTPSVLEIFTKNGAIANMFTKFSISIGQFVLPFAIG
                     MVAAANMSFRTLFVITMVLIVIDGLIIAFMPFPPMNNNVGGEKAKPEKMKFNATSWAI
                     IGIGFTCTSTFQLWLNCNQELGKLYGMADPSKIQSFYSLGTMCAILITAVLVKKFILP
                     VRILILYPAIATLMLLIIYIVQTPTICLIGGFVIGYAAAGGVLQLAVSTANEFFPTNK
                     GKITSIVMISSSLANYIVLNVASYITKAGGIEGPKYVLLFNVAITVIGILLAIFVNMR
                     YKNESKIATK"
     gene            9404..10594
                     /locus_tag="IBJ56_001394"
     CDS             9404..10594
                     /locus_tag="IBJ56_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3417651.1"
                     /translation="MKNKYLSTSLGLYMNYFVHGMALIIIAQNIDFLSQKWHTDLAGA
                     AGVVSSFGIGKLLAVFISGRLSDKFGRKLSVILGVFFYIIFLGGILLSPNTIIAYMFG
                     ISAGIANSFLDTGTYPALMEAYPKKAASANIIVKAFVQSGQFLLPFMIAFILANNLWY
                     GWSFIVLIVILLINLLYTLTRTFPPMTVGKPLDAAELAEEKKQKFHFSIDEICLILFG
                     FVAQTLLYIMSQWIAKYGSEVIHMTDDASRLLVSYASVGAIICVCVTFILGNRGVRTL
                     HILITYVTMTMLISFTLFAFPSEIVCIVGAFLLGYFSAGGIIQLGLTLLAEVSARGKG
                     FVTSLYTIAEGIAVFIIPLIAAAISRIDIAAIFLLNAGIALFGLALLMIVFTRKKKFA
                     RDHI"
     gene            complement(10633..11697)
                     /locus_tag="IBJ56_001395"
     CDS             complement(10633..11697)
                     /locus_tag="IBJ56_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417652.1"
                     /translation="MSAGLLWKEWRQNAWVFIFILIAFIGSEATTATNAVSMFNDNYN
                     YYQSEEFQKNNTADQQMTGNEIKNDLSLTPYDFEGNLGLFFYVFLFLGLKLTVFEKNK
                     QMDYFTFGLPYSKKQIFWHKMLIPLLLIFVLVPIIIFCRFWYIYQQIPGLYLPSVSDS
                     LMYISSFLLLYLFSYTLAVAVGNLVGEIITAGIIAIGSIVSFLYMFPGALTNLIIGFK
                     AFFTGKTIVDIDGGAVMLYNAIPTPILQGTTALSEFVILIILSIGMLTISWYAMKTAS
                     LENDGRFLMNNKFRVPILIIGSLYVTICLSGHYASFNYDQLIPTGQVISLIIKIILIL
                     VASVIAFWMLMYKWKTLRKH"
     gene            complement(11694..12572)
                     /locus_tag="IBJ56_001396"
     CDS             complement(11694..12572)
                     /locus_tag="IBJ56_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417653.1"
                     /translation="MKVDSLSKKIDGELLLDKITFEVKPGEIIGIVGRNGVGKTTLFR
                     TIMGFYIPDEGDVYLDEALSKNPQLKQKLFMLQDSLNCWDGYKIPTIKKFYQKTYPLF
                     DGAKFDNLLNQVNLATDVKFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQ
                     KKIMGILLEEVEKRKLGIIISSHRLADLDPIADYIHILQDNHIEESYHLESLREQAVK
                     IQIAFENKKIPPFLLENGKVINKYGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTL
                     EDLFIYHLEELGGEKS"
     gene            complement(12562..12957)
                     /locus_tag="IBJ56_001397"
     CDS             complement(12562..12957)
                     /locus_tag="IBJ56_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3417654.1"
                     /translation="MFTINTKSQLPIYEQIVQKIKEQVVKGILQEGEKILSIREFASR
                     IGVNPNTVSKAYQELERQEVIVTVKGKGTFIANQQDKVSSPKKLAETKIKLKETILDL
                     VYLGINVEEIHRLSDEYSQDIIGGDMVEG"
BASE COUNT         3944 a         2402 c         2513 g         4138 t
ORIGIN      
        1 taataattat cacctatata ctgtgtacaa caagtaatgg cagcaagttt tacatgggta
       61 cattaatacg ccggaaagga attggaatat gacgcaaaag ctgatctact ttttatcaca
      121 aacgcatatt cgaagtgcca ttgctgaagc ttgggcgaaa agactttcac ttagcaatgt
      181 caaattcatt agcggttctt ggcataaatc taaatcaaca ccgtttattg cagaagcgtt
      241 gaatgagttt gcaatcgagc cacctgaaag tttgtcttat tcccctagct cagaactact
      301 ggcagatgct gatctcattg taacaattta tgattctgca catgaaactg caccaaaatt
      361 tccagctaac atacaagaaa aaattattta ttgggacatt gatgatccgg aacaagaaat
      421 agcgttacca aaaaaatggg cgagttatca agaagtatgt gataacattg ccttatcagt
      481 aaaaaattta gagcatgtat tgatagaggc ttagatttcg ttgtcccgcc attcgtaggc
      541 gggactttta tgttaaaaag aaaggagtac atacataatg gatggataca acgatttaaa
      601 aaaggctgaa aaagcggcat ttttgagtat atttgcctat ttatttctag cggttttaaa
      661 aatagttgct gggcaattag gaaactctga tgccttactt gcagatggtt tgaataatac
      721 gactgatatt gttgcttctg ttgcgctttt aattggcctt agaatttctc gtattccacc
      781 tgatgcagat cattcatacg gacaccgacg gactgaaact attagctctt taatcgcatc
      841 tatcattatg tttctcgttg gcgtgcaagt tatttggagt tcaattgttc atattatcga
      901 aaaagaattt gcaacaccct cgatgttaac tgctgttgtc gcgctttttt ctggtgtatt
      961 tatgtatgct atttacttat ataatcatcg acttgcgaaa aaacttgata gccaagctgt
     1021 gcgagctgct gcatatgata atcgttccga cgcatttgtt agtttaggtg cgtttatcgg
     1081 gattattggg gctgttcttg gtgttccttg gcttgattcc gtgacggcct ttttggtcgg
     1141 tattttgatt gtttatactg ctatcaaaat tttctatgac gctgcacata ccttgacaga
     1201 tggtttcgat gtttctaagc tcgaaactat tcatgattta attgcttctg tacctgatgt
     1261 caaaaaagta attgatatta aagcgcgaat gaatggaaat aagatttgga tcgatgcaac
     1321 tatcgctgtg gatcctgaac taaatgtagt taaaagtcat gcaatcaccg aaatcgttga
     1381 acaaaaaatt cgtaacgaat acgaaggtgc gttcacttta gttcatattg aaccattttt
     1441 tgaataatat tcattgtcaa taatcgtaaa gtcaactata atttagatta aagtatcatt
     1501 tgctgggagg gaatattcga tggggcagag aaactaattc acataaatta tctaactaga
     1561 atgaaaaata ggcaacaaca cattggagga gttctcttcc aggacggttt ttcttctata
     1621 tagatagttt tataataagc ttatttatat taaactagga ggtgtttgcc ttagcagaaa
     1681 ctatttctgt caaggcgatt tattgatatt aaccattaaa tttttaatta tagctttact
     1741 tattgctata tcagcatttt tcgtggcaac agaatttgcg attgttaaaa tgcgaccaag
     1801 ccgtttggac caattaattg cggagaaaga taaacgcgca gtcctcgcta gacatattta
     1861 caatcatttg aacgcttact tatcagcctg ccaactcggg ataacgatta gttcccttgg
     1921 acttggttgg ttgggggaat ctacggtaga agcggcgtta catccgttat ttagcttaat
     1981 ggaacttccg caatcagcta ttacgattct atccttcacg attgcctttc tatttatcac
     2041 attcttgcac gtagttgttg gggaacttgt accgaaaaca ctggcgattg ataaaacaga
     2101 ggcagttgca cttgcggtag ctcgtccact gcatattttt tataaagtga tgttcccgtt
     2161 catttggatt ttaaatggtt ctgccgtttt catcgcacgt ctttttggtt tagagccagc
     2221 ttccgagcac gaaattgctc ataccgagga tgaattaaaa ataatcgtcg gcgaaagtta
     2281 taagagtggt gaaatcaacc aatcagaatt ccgttatgtg aataagattt ttgattttga
     2341 tgaacgtatg gcgaaagaag tcatgattcc gcgaacagag attgttaccg ttgatacggg
     2401 ctctactatc ggggaattat ccgacattat gcaaaatgaa cgctatacgc gctatccggt
     2461 tattgatggc gataaagacc acgttatcgg cgtacttaat ttaaaagaaa ttttgtcagc
     2521 atatgttgag catggatcta atccaagttt tagcattgat ccttacgtaa aaccaattat
     2581 tcgtgtgatt gaaacaattc cgattaaaga attacttttc cgtatgcagc gtgaacgttc
     2641 ccatatcgcg attttacttg acgaatatgg tggtacttct ggacttgtta cggttgaaga
     2701 tattgtagag gaaatcgttg gtgatatccg cgatgaattt gatgccgatg aaattccaga
     2761 aattcgcaaa atcaaagacg gtcactttat tgtggatgcg aaacttctta ttgatgaagt
     2821 aaataatatt ttaggtactg aaattgagga agaagaagtc gacacaattg gcggctggtt
     2881 cttaacgcaa aattatgaag tagaagttgg ggacgaaatt gattacgatg gattcatttt
     2941 ccgcgtaaaa caaggcgaac ctcatcatat tgaatatatc gaaatcatca aaaaaacgaa
     3001 tgactaatca aaaagtagct atccctctcg taggatagct acttttttta tatacgatgc
     3061 gctaacataa attgcttgaa cttctcagct gcgggcgtta gcgtttggtt tttcgcgact
     3121 gcgagataaa agaatctctc ccagtttggg cttctaattg gtaagacttt gacatccaca
     3181 taatttaaaa tcggcatgtt cggaactaca gcaatcccaa agttttgcgc gaccattccg
     3241 gcaatgactt gatccacttc aatttcatat gcaatttgat aatcggcacc aatttttctg
     3301 aacaaatcat cgataattgg acgcaaacca ctttttttcg agaatgcgat atgcggataa
     3361 tctaccgttt cgattaaatc aatccagtct ttctcagcaa gaggatggct tttggggacg
     3421 atgagcacta attcttgttt ggcaattggc gtaaagtgaa tatttctttc attttcaagt
     3481 ttagaacaaa taccaatatc aaatttcttt tcttttaggc cttgaatgat atcaatcgaa
     3541 acacctgtat ggaaaataaa atcgatttgt ttttctggtt cggtttggag aaattcttga
     3601 acaagctttg gtattagaga cgtgccaagt gtttgcaaga atgccaagtc aatctgccct
     3661 tccccattcg ccgctttttt agtcgtcgcg acacccgcat caatcatatc taaggactct
     3721 tccacataat caagaaatac tttgccagct ttacttaacc ctatattccg cccttctttt
     3781 tcaaataaag ggatacctaa ttcttgctct aaggaggaaa ttgcgtgact taaactaggc
     3841 tgtgtaatca gcaatttttc agctgctttt gtgtaatgct ccatgtgcgc cagtgtgacg
     3901 aagtatcgta aatggtgtaa attcatgctt ctctcctaac taaaaagtta tctatgcaat
     3961 ttatctatca attaatagaa caataccaat ttgtttttat ggaatagtca taatacaatt
     4021 agactgtagt tacgccagtg aaataaacta ttccttaaaa accaatatac ggtagaatag
     4081 gttaactgtc cagttccatt ttcaactatt gaaggcgtta tcacatcaga ggtttttaat
     4141 taagcggaat taattttttt actggtgttt gtgaaaatat tatcaaagtt tcttgtaatt
     4201 tttattatgg agaggagata atttttatga caaatgcaaa tggcaaccta aaaaaatgcc
     4261 ccatcacgat tagctcttat acgcttggaa cagaggtatc ttttcctaaa cgagtaaaag
     4321 tcgctgcgga aaacggtttt gacggaattg gcttgcgtgc agaaaactat gtagatgcac
     4381 tagctgccgg attaacggat gaagacatgt tgcggatttt agacgagcat aacatgaaag
     4441 taacagaagt ggagtacata actcagtggg gaactgccga agatcgtaca gcagaacaac
     4501 aaaagaaaga gcaaacaact ttccacatgg cgcgattatt tggcgtcaaa catattaatt
     4561 gtggtttgct tgaaaaaatc cctgaggaac aaatcatcgt cgcgcttggt gaattatgtg
     4621 accgcgcaga agaattaatt attggtttag aatttatgcc atatagcggt gtagcagact
     4681 tacaagcagc ttggcgagta gcagaagcat gcggccgaga taatgcgcaa cttatttgtg
     4741 acacgtggca ctgggctaga gcaaaccaaa cagcagaatc tatcaaaaac gttcccgctg
     4801 atcggattgt ttccatccaa ctatgcgatg tccacgaaac gccttacaaa gaacttcgtg
     4861 aggaatcact tcatgatcgt ctagctcctg gagaaggcta cggagatacg gtcggttttg
     4921 caaaaatttt aaaagaacat ggtgtaaatc cacgtgtgat gggagtcgaa gttatttcag
     4981 actctatggt agcaactggt ttagagtatg ccgcccttaa agtatacaat gccacgaaaa
     5041 aagtattaga cgaagcatgg ccagaaattt ctccacgcta aacacctact cgcttatgtg
     5101 aaaataataa cgtagtagga agactccctg tgaaaggaat gtgttatttt tgaaatttaa
     5161 ttcgatgttt tcacctattg atatcgggcc gatgaaggtg cctaacagat ttgtcgtatc
     5221 gccaatgtgt aacaactatg caaatacaga tggaacttta tcagatactt cccttgctta
     5281 ttacaaagaa cgagcacttg ggggttttgg gcttattact tttgaagcaa cggttgtaga
     5341 tgtacgcgca aaaggtggcg caaataaagc atgcctatat agtgatcatc aaattgctag
     5401 ttttaaacga gtgattgatg tatgtcacga tgctggagca aaaatttctg ttcagttaca
     5461 gcacgctgga ccagaaggaa attccaaagt atctggttat cctttaagag cagcctcagc
     5521 aatcgcctct gctgcagggc gtaatactcc ggaagccatt tcgcgtgaag aactttatga
     5581 gttgattgaa ctttacggag aagctgcttt acgagcaaaa aaagcgggcg ccgatgcggt
     5641 tgaagttcac tgcgcacatg gttatctagt aagtagtttc ttatctgcac ggacgaacaa
     5701 acgtgtggac gagtttggtg gctgttttga aaaccgaatg cgattacctc ggcttattat
     5761 tgaaagtatt cgtaaacgtg tcggtcattc catcgcaatt ctttgccgaa ttaatagcac
     5821 ggatggtgtg gaaggcggac taagtgttca agatagcgca acagttgcag cttatttaga
     5881 agattgtggt ttggatggtt tgcatgtttc tcgtagcgtc catattcgtg atgaatacat
     5941 gtgggcgcca accgtattgc atgcaggatt tagctctgat cttgtaacac aaatcaaacg
     6001 cgctgtttct attcctgtaa ttactgtggg tcgtttcaca gagccgcatt acgcggaatt
     6061 aatggttcgt gaaggccgcg ctgacttggt tgctttcggg cgtcagtctt tagcagatcc
     6121 agaaacacca aacaaagctg ctgctggaaa actagacgaa ttacttcctt gcatcgcttg
     6181 tcttcaaggt tgcgttgcta atatgtatgc cggaaaaccc attacttgtt tagtaaatcc
     6241 gttacttgga cgtgaatccg aagcttattc acctaaaact ccaagtaaaa aagtagttgt
     6301 cattggcggt ggtgtcggcg ggctttatgc tggatggatg gctggatccc gtggtcatga
     6361 tgtgacagtt tatgaagcat cagatatgat tggcggtcaa atgcgcttag ctgcctatcc
     6421 tcctggtaaa ggcgacttaa caaacatggt tcgaagttac atcaaaaagt gtgaacagtt
     6481 cgatgtcgaa attaaaacaa acacacctgt aacaccagaa cttattcaag aagttgcccc
     6541 agatgccgtc attattgcaa ctggcgccac tccacttgtt ttgccgatac caggtattga
     6601 ggatgctgga cttatccacg cagttgactt acttgatggg aaagagaaat gtggtcaaaa
     6661 agtgctcgta gttggcggag gtatggttgg tagtgaaaca gctgcatttt taggtgaagc
     6721 tggtcatgac gtcaccgttg tagaacttcg cgatgaagtc ggagcagacg ttatttctga
     6781 acatcgtaaa ttcctgatgc gtgatttcga tgaatataaa atcaaaagtg ttacgaatgc
     6841 aaaagtaacg agtttctttg aagacggggt aacctattcc ctagcggata acaaagaaca
     6901 ccgaatcgac ggatttgact ctgttgttct agcaatggga tcaagagcct ataacccact
     6961 ggaagaagct ataaaaaaaa tggtacccga aacctatgtc atcggtgatg ctattcgtgc
     7021 gcgccgggca ttggatgcaa caaaagaagc actagacgct gtattacaat tataatttat
     7081 cattctactc gctgtaatgt gcagcgagta ggattcattc ggaggaaaac aaaatggaaa
     7141 atagaatttc aggaacgact aggcttcttg gcttaattgg gacacccgta gaccattcaa
     7201 aatctccaat catgtataat tacagttttc aaaaagcggg gttggattat gcttacctag
     7261 cttttgacac acctattgaa aaagttgctg atactataaa agcaatcaag acatttaatc
     7321 tgcgtggcgc aaacgtgacc atgccttgta aaagtgaagt tttaaaacac atggatgacc
     7381 tttcccctgc tgctcggatg attggcgctg ttaacactat cgtaaatgaa gacgggaagc
     7441 taactgggca tataacagat ggccttggtt ttattgcaaa tttacgagat gctagtgtag
     7501 atgtcaccgg caaaaaaatg actataattg gtgctggtgg tgcagctaca gcaatccaag
     7561 tccagtgtgc acttgatggg gccaaggaaa tcaccatttt taatattaaa gacgcttttt
     7621 atgacaaagc aaaacaaact gctgcttcca ttaaacaaga agtgccaaat tgcatcgtac
     7681 atatttatga tttgaacgat acagaaaaac taaatgcgga aattgccact agcgatatcc
     7741 ttgttaatgc gacactcgtt ggcatgcatc cgaatgaaca cgaaacacct attagcgata
     7801 catccgtttt tagaaaagaa cttatcgttg cagatattat ttataaccct aaaaaaacgc
     7861 aacttctact agatgctgaa gctgctggtt gtaagactgt aggcgggtta ggaatgcttt
     7921 tgtggcaagg cgctgaagca tacaaattgt ttactggtaa agatatgcca gtttcagaag
     7981 taaagaatct atatttcaac taataaattc atcaggattt cgagaggaga aaaaaatgaa
     8041 cgcaaaaaga ttttatccaa cagcaatagc actttatttt acttatttta ttcacggtat
     8101 tggggtatcc attcttggcc aatacaaaca agatttcgcc ggagtatggg gagcagataa
     8161 gctttctgat ggcacatttg acgtaagcat ggttatcgca gttatcgcag cacttggttt
     8221 aggtcgcttg ctgacattac caatttctgg acccttctca gataaatttg ggcgtaaacc
     8281 gtccgcatta atcggtgttg cgttatacgc agtttatttc atcggtcttg cttttgcacc
     8341 gaatatgtat atcgcttacg ctttcgcttt tgtaggagga gcggcgaact cattcttaga
     8401 cacagccgta acaccatcag ttctagaaat tttcacaaaa aatggcgcca ttgccaatat
     8461 gtttactaaa ttctctatct ctatcggaca atttgtatta cctttcgcaa tcggtatggt
     8521 tgcggcggca aatatgtcat tccgcacact attcgttatt acaatggtct taatcgttat
     8581 tgatggctta atcatcgcat ttatgccatt ccctccaatg aacaataatg ttggcggcga
     8641 aaaagcaaaa ccagaaaaaa tgaaattcaa tgcaactagt tgggctataa tcggtattgg
     8701 ttttacgtgt acatccactt tccaactatg gctaaactgc aaccaagaac ttggaaaatt
     8761 atacggtatg gctgatccaa gtaaaattca atcattctac tcactaggaa caatgtgcgc
     8821 aattctaatt accgctgttc tcgtgaaaaa atttatttta ccagtccgaa ttctaatcct
     8881 atatccagca attgccactt taatgttgct aattatttat atcgtacaaa caccaaccat
     8941 ttgcttaatt ggtggatttg tcatcggata cgctgctgct gggggagttc tacaactagc
     9001 tgtatcaact gccaatgagt ttttcccaac aaacaaaggg aaaatcactt caattgtcat
     9061 gatttcttcc agtctagcaa actatattgt tttaaacgtt gcaagttata ttactaaagc
     9121 tggtggtatc gaaggtccga aatatgtgtt attattcaat gtagcgataa ctgttattgg
     9181 tatcctacta gcaatctttg tcaatatgcg ttacaaaaac gaatctaaaa ttgctactaa
     9241 ataatttatt attcaactga gcatttatga tgctcagttg aacttacata tcatttgtga
     9301 agtaaagcac aaacttatgt attttatcta tatgaactca ctgaaaaaga gggtattttt
     9361 aataaaaagt cctcataagt cattacataa aggagagcag actatgaaaa acaaatattt
     9421 atctacatca cttggtcttt atatgaacta ctttgttcat ggtatggcgt taatcatcat
     9481 tgcacaaaat attgattttt tatctcaaaa atggcataca gatttggctg gtgctgccgg
     9541 cgttgtatct tcctttggga ttggtaaatt attagctgta tttatttcgg gaagactatc
     9601 cgataaattc ggtagaaagt tgtctgttat tctcggcgtg tttttctata ttatcttttt
     9661 aggcggtata ttactcagcc ccaatacgat tatcgcatac atgtttggta tttctgctgg
     9721 gatagcaaat tccttcttag atacaggaac ctaccccgcc cttatggaag cttatccaaa
     9781 aaaagctgct tctgctaata tcattgttaa agctttcgta caatctggtc aattcctttt
     9841 accattcatg attgcattta ttttagcaaa taacttatgg tatggctgga gctttattgt
     9901 attgatcgtt attttactaa ttaacttact ctatacatta acgcgaactt tcccgccgat
     9961 gactgttgga aaaccactag atgcagcaga acttgccgaa gagaaaaagc aaaagtttca
    10021 ttttagtata gatgaaattt gtttgatttt atttggtttt gtggcccaaa cgcttcttta
    10081 tattatgagc caatggatcg ctaagtatgg ttcagaagtt attcatatga cagacgatgc
    10141 ttctagacta cttgtaagtt atgctagtgt cggagcgatt atttgtgtgt gtgtgacgtt
    10201 tattttagga aatcgcggcg tgcgaacgct ccatatctta attacttatg taaccatgac
    10261 gatgctcatc tcctttacac tgtttgcttt cccaagcgaa atcgtatgta ttgttggggc
    10321 tttcttattg ggctatttct ctgctggagg aattatccaa ttaggtttaa cactacttgc
    10381 ggaggtttct gctcgaggaa agggttttgt cactagcctt tatactattg cagaagggat
    10441 agctgttttc attattccct tgattgctgc tgcgatttcc cgaattgata ttgccgctat
    10501 cttcttacta aatgctggta ttgcgctttt cggcctcgct ctcttaatga ttgtatttac
    10561 aagaaagaaa aaatttgctc gagatcatat ttaaaaaaga ccgagaattg attcctcaat
    10621 tctcggtctt ttttaatgtt tccgtaacgt cttccatttg tacatgagca tccaaaaagc
    10681 aataacagat gcaactaaaa tcagtataat tttaattatt aaacttataa cttgtcccgt
    10741 cggaattaat tgatcgtaat taaaacttgc ataatggcca cttaaacaaa tagtcacata
    10801 aagagaacca atgataagta tagggacccg gaatttatta ttcattaaaa atctaccatc
    10861 gttttccaaa gaagctgttt tcatcgcata ccagctaatg gttaacattc ctattgataa
    10921 gataattaat atgacaaatt cacttaacgc tgtagttcct tgtaaaattg gcgtaggtat
    10981 tgcgttatac agcataactg ctccaccatc aatatccact attgtttttc cagtaaagaa
    11041 agctttaaaa ccaatgatta aattagtcaa tgcgcctgga aacatgtata aaaagctaac
    11101 aatagatcca atcgctataa ttccggctgt aattatctct ccaaccaaat tcccgactgc
    11161 cactgctaac gtgtaagaaa ataaatacaa taacaaaaag gaactaatat acatcaaaga
    11221 atcgctcaca ctgggtaaat acaaccccgg tatttgctgg taaatatacc aaaacctaca
    11281 gaaaatgatg attggtacta gtacgaaaat taaaagtaat ggaataagca tcttatgcca
    11341 aaaaatttgc ttcttggagt atggcaatcc aaaagtaaaa taatccattt gcttattttt
    11401 ctcaaaaaca gttaacttta accctaaaaa cagaaacaca tagaagaaaa gccctaaatt
    11461 cccttcaaaa tcataaggag ttaaacttaa atcatttttt atttcattac ccgtcatttg
    11521 ttgatctgct gtattatttt tttgaaattc ttcagactga taatagttat agttgtcatt
    11581 aaacatacta accgcgttcg ttgcagtcgt agcttcagaa cctataaaag cgattaaaat
    11641 aaatataaat acccacgcat tctgacgcca ttctttccaa agaagccctg cactcatgat
    11701 ttctcgcctc ctagttcttc tagatgataa ataaacaagt cttctaatgt gactgcgagt
    11761 tcatccatga aaattggttt ttcttttttt attgctgcgt ataattctgt gttcatatct
    11821 cggaataaaa tggtgtaaac acggccatac ttattaatta ctttgccatt ttccagtaaa
    11881 aaaggtggaa tttttttatt ttcaaaagcg atctgaattt taacagcttg ttcccgaagt
    11941 gattcaagat ggtaagactc ttcaatatga ttatcttgta aaatatgaat atagtcagca
    12001 atcggatcta aatcagctaa acgatgggaa gaaataataa tgcctaattt ccgcttctcc
    12061 acttcttcta ataatatgcc cataattttc ttttgagcaa ttatatcgag accttccatt
    12121 ggttcatcga gcaaaataaa ttcagctccg atagataggg caagaacgag cccaaaaaga
    12181 cctttcattc cttttgaata attttgaaat tttacatctg tagctaggtt aacttgattg
    12241 agtaagttat caaatttagc tccgtcgaat aatggataag ttttttgata gaattttttt
    12301 atcgtcggaa tcttataacc atcccaacaa tttaaactat cttgaagcat gaataatttt
    12361 tgctttaatt gagggttttt gcttaatgcc tcatctaagt acacatctcc ctcatcagga
    12421 atataaaaac ccataatagt tcgaaaaaga gttgttttac ctacgccatt tcgtccgact
    12481 ataccaataa tttctcctgg ctttacttca aatgttattt tatccaataa gagttccccg
    12541 tcaatttttt tgctaagtga atcaaccttc aaccatgtca cctccaatga tgtcttgact
    12601 atattcgtct gataatctat gtatttcttc aacgttaatt ccaaggtaaa ctaaatcgag
    12661 aatcgtttct tttaatttaa tttttgtttc tgctagtttt tttggtgaac ttactttatc
    12721 ttgttggttc gctatgaagg tcccttttcc ttttaccgtg acaattactt cttgtcgttc
    12781 taattcttgg tacgctttac tcacagtgtt tgggttcact ccgattctac ttgcaaattc
    12841 acgtatagat aatatctttt ctccttcttg aagtatccct ttgacaactt gttctttaat
    12901 tttttggacg atctgttcat aaatcggtag ttgacttttt gtgttaatcg taaacatctc
    12961 tccccctgct ttcatgaatt ctactataga gaactaa
//
LOCUS       DABQVC010000070        12991 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.070,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000070 DABQVC010000000
VERSION     DABQVC010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12991
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.070"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..212)
                     /locus_tag="IBJ56_001398"
     CDS             complement(<1..212)
                     /locus_tag="IBJ56_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417655.1"
                     /translation="MIFQRLLKTRDTEFYRVIQNGNIEDVFGYLLIHDKREPAEINDF
                     KVFAKSNINKEAFSVNIKKNHIYTMF"
     gene            718..2073
                     /gene="dnaA"
                     /locus_tag="IBJ56_001399"
     CDS             718..2073
                     /gene="dnaA"
                     /locus_tag="IBJ56_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HAM3417656.1"
                     /translation="MQSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIIS
                     APNNFVRDWLEKSYTQFIANILQEITGRLFDVRFIDGEQEENFEYTVIKPNPALDEDG
                     IEIGKHMLNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLM
                     HAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFL
                     AGKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPD
                     LETRIAILRKKAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA
                     GLAAEALKDIIPSSKSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYL
                     SRELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKNLRKAQNM
                     F"
     gene            2267..3412
                     /gene="dnaN"
                     /locus_tag="IBJ56_001400"
     CDS             2267..3412
                     /gene="dnaN"
                     /locus_tag="IBJ56_001400"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HAM3417657.1"
                     /translation="MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTL
                     TGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNY
                     QTNISSGQASFTLNGLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRP
                     VLTGVNWIIKENKLSAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDA
                     SESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAID
                     RASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKY
                     MMDALRAFEGDDIQISFSGTMRPFVLRPKDAANPNEILQLITPVRTY"
     gene            3520..4863
                     /locus_tag="IBJ56_001401"
     CDS             3520..4863
                     /locus_tag="IBJ56_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HAM3417658.1"
                     /translation="MMKDMTTGNPTKLIFLFAMPMLIGNLFQQFYTMIDAVIVGKFVS
                     VDALAAVGATNSVNFFMISLIIGLMSGISVVVAQYFGFKDFDRLKDVIATATYAVVFS
                     AIILTVAGVLLAKPLLILLRTPANILDDSTIFLTTLFIGILPMSLYNGMAAILRALGN
                     SITPLIFLILSSLMNIALDFLFVVYMDMGVRGAAIATVLSQTAAAIAVIYYAYRHVPF
                     MRIERAKFKLSTPLLKEMVRIGLPSGLQGSFISIGNMALQSLINGFGSSVVAAYTAAS
                     RIDSLTYQPGIAFGAASSMFAGQNIGAGKIDRVREGFWSGIKVVTAISIGITILVQLF
                     AREFLLLFVDSSETEVINIGVSYLLIVSLFYVVVGVLFVVRETLRGTGDAMVPLAMGI
                     FELVSRLVIGFVLSLYIGYIGLWWATPVAWITATMLGVWRYKSGAWQKKAVIRRK"
     gene            5043..5264
                     /gene="yaaA"
                     /locus_tag="IBJ56_001402"
     CDS             5043..5264
                     /gene="yaaA"
                     /locus_tag="IBJ56_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HAM3417659.1"
                     /translation="MAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGE
                     QDNRRGKKLRNGDVILVPGVGKVKIEQGK"
     gene            5268..6380
                     /gene="recF"
                     /locus_tag="IBJ56_001403"
     CDS             5268..6380
                     /gene="recF"
                     /locus_tag="IBJ56_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HAM3417660.1"
                     /translation="MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVL
                     MLALAKSHRTTNDKDFIMWEKEEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQK
                     KLSQYVGNLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQR
                     NQYLKMLQMKRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGL
                     ETLKIEYKASITLNGDDPEVWKADLLQKIESIKQREIDRGVTLIGPHRDDSLFYINGQ
                     NVQDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIE
                     GKVQTFVTTTSTSGIDHETLKQATTFYVEKGTVKKS"
     gene            6429..8369
                     /gene="gyrB"
                     /locus_tag="IBJ56_001404"
     CDS             6429..8369
                     /gene="gyrB"
                     /locus_tag="IBJ56_001404"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HAM3417661.1"
                     /translation="MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQR
                     GLHHLVWEIVDNAIDEALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVE
                     VIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDV
                     VMDMEEQGETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDK
                     REEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSS
                     NIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAI
                     ISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASR
                     ARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDR
                     LFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMT
                     DADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDY
                     LASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEMLMG
                     DRVEPRRKFIEDNAQYVKNLDV"
     gene            8464..10992
                     /gene="gyrA"
                     /locus_tag="IBJ56_001405"
     CDS             8464..10992
                     /gene="gyrA"
                     /locus_tag="IBJ56_001405"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HAM3417662.1"
                     /translation="MAETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKP
                     VHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNM
                     LVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVIL
                     PARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDF
                     PTAGMIMGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVER
                     IAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINM
                     LALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDA
                     IIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVAL
                     INDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAI
                     TLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKV
                     YRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFTTKHGVVKR
                     TTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMG
                     RTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKT
                     VTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDE
                     KVATVAKVPKEEDEVELEEEIDETLITQVPDESFEDAPGSDIEE"
     gene            11126..12640
                     /gene="cls"
                     /locus_tag="IBJ56_001406"
     CDS             11126..12640
                     /gene="cls"
                     /locus_tag="IBJ56_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HAM3417663.1"
                     /translation="MRKLIQFLFIAVVLFLVEYFLINQAAILFLVTSGLIQLCGLIIV
                     IRLLLFDQRNTSSKVAWIAVIFILPVLGTISYLVFGRNPATRKFSTAQVMEKAKLINA
                     IHAIPNNTNEKLPRLSKRIAHLTSIEPIKGNKIEILTNGEETFPVLLDALRKAENHIH
                     IQYYIFKTDEISTKIRDILVEKAKAGVEVRFMFDGLGSSKLGKAFLAPLKEAGVSIHA
                     FDPITSPWIVRTANLRNHRKIVVIDGQIGFTGGLNIGEEYRSNTPDFRVWRDTHIKIT
                     GQAVIELQESFLNDWVYMENQAGAADQFISEAGLQQYFSPVDVGDEWAQVIYGGPYDK
                     EKWVRDSMLDLIDSAKESVWIVSPYFVPDEESLAVIRRVAMSGVDVRVIIPGKGDRGI
                     SFHGSNAYVKTMIEAGAKMYAYADDSFVHAKAMLVDGTRAAIGTANFDVRSFRLNHEL
                     MVFLYDESEAMHHLKRDFEKDFEDSRLFTMKDMENKPLLTRIKEVLSSLLSPIL"
     gene            12656..>12991
                     /locus_tag="IBJ56_001407"
     CDS             12656..>12991
                     /locus_tag="IBJ56_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3417664.1"
                     /translation="MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQE
                     LYDKHIHDQSERRFILELDGQMVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSAT
                     KLAMKYAFHV"
BASE COUNT         4171 a         2248 c         2653 g         3919 t
ORIGIN      
        1 aaaaacatcg tgtaaatatg attttttttg atattcactg aaaaagcttc tttatttata
       61 ttactttttg caaacacttt aaaatcatta atttctgctg gttcccgttt gtcgtgaatt
      121 agtaagtatc caaacacatc ttcaatattc ccgttttgta taactcgata aaattctgta
      181 tctctcgttt tcaaaagccg ttgaaatatc atttttcaca acctcattta tttgtctttt
      241 ttcttattct ggtaaatagt ttaacacatt gtcgtaatga aatccttttc cggaaagtgt
      301 ggataactag ttaataacac ctttttattg tggataacct tttcaattag tttaaactta
      361 tacacaatta gtggttaatt acacacaatg gcttgtggat aattaaatct aacaatttcg
      421 ttacagattt ctttacacac aagttataca caagttaact ggctgtggac aaccgttttt
      481 cacatctgga cagttttgtg gatagatttt gtaagtcctt gctatcagag tgattttctg
      541 atattataat tcctgtcgaa tagaaatata gctggggaaa actaaagtta tccacaatac
      601 atttttactt tgtggataat tttttaacag tgtttggata accttatcca tggctttttc
      661 tatctgtgga taactttata gcatccattt acattacata aaaaaggggg gttactagtg
      721 caatcaattg aagacatctg gcaggaaaca ctgcaaatcg ttaaaaaaaa tatgagtaaa
      781 cctagttacg acacatggat gaaatcaaca accgctcatt cacttgaagg taacacgttt
      841 attatttcag cgcccaataa ttttgttcgc gattggttag agaagagtta cacgcaattt
      901 atcgctaaca ttttgcaaga aataactggt cgcttatttg atgtccgctt tattgatggc
      961 gagcaggaag aaaactttga atacactgtg attaaaccaa atccagcgtt agatgaagat
     1021 ggcattgaaa ttggaaaaca tatgcttaat ccgcgttatg tttttgatac ttttgtcatt
     1081 ggttcaggga acagatttgc ccacgcagca tcacttgcag tagccgaagc accagcgaaa
     1141 gcatataatc cactcttcat ttatggagga gttggcctcg gtaaaacaca tttaatgcac
     1201 gcagttggcc actatgttca acaacataaa gataatgcga aagtaatgta cctttccagc
     1261 gaaaaattca ccaatgagtt tattagctct attcgtgata ataaaaccga agaattccgt
     1321 acaaaatacc ggaatgtgga tgtcttactt attgatgata ttcaattttt agcaggtaaa
     1381 gaaggaacac aagaggaatt tttccataca tttaacacac tttatgatga acaaaagcaa
     1441 attattattt ccagtgaccg accaccgaaa gaaattccaa cattggaaga tcgactgaga
     1501 tcccgctttg aatggggcct aattactgat attacgccac cagacttaga aacacggatc
     1561 gccattttac gtaaaaaagc aaaagcagac ggattagata ttccaaatga agtcatgctt
     1621 tacatcgcaa accaaattga ttcgaatatt cgcgagctag aaggcgcact catccgagta
     1681 gttgcttatt cttccctcgt taataaagat ataacagctg gtcttgcagc agaagcacta
     1741 aaagatatta tcccctcttc taaatcacaa gttattacaa ttagtggtat tcaagaagca
     1801 gtcggtgaat atttccatgt tcgtttagaa gattttaaag caaaaaaacg gacgaaaagt
     1861 atcgcattcc cgcgccaaat cgctatgtat ctttcaagag agcttacaga tgcctcatta
     1921 ccaaaaatcg gtgatgaatt tggtggtcga gatcatacaa ccgtcatcca tgcacatgaa
     1981 aaaatatcgc aactactaaa aaccgatcaa gtgttgaaaa atgaccttgc cgaaattgaa
     2041 aaaaatttaa gaaaagcaca aaatatgttt taatagacct gtgtacaatg tggataactg
     2101 aaacatactt acccacaagt tatcaacatg tggaaaactt tatgtcgcat ggcttataac
     2161 ctacttatcc acaaatccac agcgcctatt actattacta cgatttttta ttaattaatt
     2221 aaaggttttt gaggttttac aaaatataaa aaaatggggg atactcatga aatttgttat
     2281 tgagcgtgat cgtcttgtcc aagcagtcaa tgaagttact cgtgccatct ctgcaagaac
     2341 aacgattcca attttaacgg ggataaaaat agtcgtaaat gatgaaggtg taacactaac
     2401 tggtagtgat tccgatattt caatcgaagc atttattcca ttaattgaaa atgatgaagt
     2461 aattgtagaa gtggagagtt ttggtggaat tgtacttcaa tcaaaatact ttggcgatat
     2521 tgttcgtcgt ttaccagaag aaaatgtaga aattgaagtg acttctaact accaaaccaa
     2581 cattagttct ggccaagcat cctttacatt aaatggctta gatccaatgg aatatcctaa
     2641 attacctgaa gtaacagacg gaaaaacaat taaaattcca attaatgtac ttaaaaatat
     2701 tgttagacaa actgtttttg ctgtgtctgc gattgaagtt cgtccagtac ttactggtgt
     2761 aaactggatt atcaaagaaa ataaactaag cgcagttgca accgatagtc atcgtctagc
     2821 tttacgtgaa atacctcttg aaacagacat tgatgaagaa tacaacattg ttattcctgg
     2881 aaaaagttta tctgaattaa ataaactttt agatgatgca agcgaatcta ttgaaatgac
     2941 ccttgccaac aaccaaattc tttttaaatt aaaagattta ttattttatt ctcgtttact
     3001 tgaaggtagt tatccagata catctcgatt aattccaact gatactaaat cagaattagt
     3061 cattaattcc aaagcatttt tacaagcaat tgaccgtgcg tccctacttg ctcgcgaaaa
     3121 tcgtaataac gttattaaat taatgacgct agaaaatggc caagtagaag tatcatccaa
     3181 ttctccagaa gttgggaatg tttctgaaaa tgtcttcagc caaagtttta ctggcgaaga
     3241 gatcaaaata tcttttaacg gtaaatacat gatggatgcc ctacgtgctt ttgaaggtga
     3301 tgatattcaa atttccttct ccggtacaat gagaccattc gtacttcgac caaaagatgc
     3361 agccaatcca aatgaaattt tacaattaat cacgccggtt agaacttact aatctcgcaa
     3421 aaagcacatc cgtcttggtt tcaaggcgga ttcttttttt gttatagtac agtttttgga
     3481 tagaaatgta tatttatgca aacggaggta attcttagca tgatgaaaga tatgacaaca
     3541 ggtaatccga caaaattaat ttttttattc gcgatgccga tgttgattgg aaacttgttt
     3601 cagcaatttt atacgatgat tgatgctgtt attgttggga aatttgtcag tgtagatgcg
     3661 ctggctgctg ttggagcgac aaattcggtc aattttttta tgatttcttt gattattgga
     3721 cttatgagcg ggatttctgt cgtagtagcg cagtattttg ggtttaaaga ttttgatcgt
     3781 ttgaaagatg ttattgcaac ggcgacttat gcggtggttt tttcggcgat tattttaact
     3841 gttgcaggag ttttgctagc aaagccattg ctaattttac ttagaactcc agcgaatatt
     3901 ttggatgatt ctactatctt tttaaccact ctttttattg ggattttacc gatgagtctg
     3961 tataacggaa tggccgcgat acttcgggcg cttggaaatt cgattacacc gctgattttt
     4021 ttaattttat cgtccttaat gaatattgca cttgattttt tatttgtcgt atatatggat
     4081 atgggcgttc gcggggctgc tattgcgaca gttctttctc aaacagctgc agcaattgcc
     4141 gttatttact atgcttatcg ccacgtacca tttatgcgga tagagcgcgc aaaattcaag
     4201 ctttccaccc cactacttaa agaaatggtg cgcattggac taccttctgg attacaagga
     4261 tcctttattt ctatcggaaa catggctctt caaagtttaa taaatggatt tggttcatcg
     4321 gtcgttgcgg catatacggc ggcgagtcga attgattcac ttacatatca accaggaatt
     4381 gcttttggag cagcttcttc gatgtttgct ggtcagaaca tcggtgctgg gaaaattgac
     4441 cgcgttcgcg aaggtttttg gtcgggaatt aaagtagtta cagctatcag cattggaata
     4501 acgattttag ttcaactttt cgctcgggag tttttattac tatttgttga ttctagtgag
     4561 acggaagtta ttaatatcgg tgtaagttat ttacttattg tctctttatt ttatgtcgta
     4621 gtgggagttt tatttgttgt tcgagaaaca ctcagaggca ccggagatgc gatggttcct
     4681 ttagctatgg ggatttttga gttagtttcg agactggtta tcggatttgt tttatcgctt
     4741 tatattggtt acatagggct ttggtgggct acaccagttg cgtggattac agctacgatg
     4801 ctcggcgttt ggagatataa atcaggagca tggcaaaaaa aggcagttat taggcgaaaa
     4861 taaccatttt agtaaaaaaa cgccagagaa gctcatattt tctttttttt aataaataat
     4921 atccccccat tagttttgct aaaaaaagct gaaaaacgaa tatatgaaaa tattctttgt
     4981 attattggca aaactttagt aaaatagaag gtagtgataa aaaaagattg ggcgtgaaat
     5041 ttttggctga aacagtaaag ataaatagcg agttcgtaac gcttggtcaa cttttacaaa
     5101 tgattgatgt agtttcaact ggtggaatgg cgaaagcgta ccttagtgaa aatacgattt
     5161 acatcaacgg agagcaagac aaccgccggg ggaaaaagct tcgtaatggc gatgttatct
     5221 tagttcccgg tgttggaaaa gtgaaaatcg agcaaggaaa ataacagatg catttagaaa
     5281 gtattgtttt aagaaatttc cggaattacg aaaacttaga actagaattt tccccatctg
     5341 ttaatgtttt tcttggtgag aatgcacaag gtaaaaccaa ccttttagaa gccgtattga
     5401 tgcttgcact tgcaaagtca catcggacaa cgaatgataa agattttatt atgtgggaaa
     5461 aagaagaagc caagatggaa gggcgaatag caaagcacgg acaatcagtg cctttagagc
     5521 ttgctatcac ccaaaaaggt aagcgagcta aagtaaatca tttggaacaa aagaaactta
     5581 gccaatatgt cggtaacttg aatgtggtta tttttgcccc agaagattta tcgcttgtga
     5641 agggcgctcc aggaattaga cgtcggtttt tgaatatgga aattggacaa atgcagccga
     5701 tttatttgca taatctaagt gaataccaac gaatattgca acaacggaac caatatttga
     5761 agatgttgca aatgaaacga aaagtagatc caatattact cgatattttg actgaacagt
     5821 tcgcagatgt cgccattaat ttgacgaaaa gacgagctga tttcattcaa aaactagagg
     5881 catatgcggc gccaattcat caccaaattt cccgaggact tgagacgctg aaaattgagt
     5941 ataaagcttc catcacgcta aatggggacg atcccgaagt gtggaaagca gatttgctcc
     6001 aaaaaataga atcaatcaaa caaagagaaa tcgaccgtgg tgtcacgctt attggaccac
     6061 atcgggatga ttctctgttt tatattaatg ggcaaaatgt gcaagatttt ggttcgcaag
     6121 gtcagcaacg gacaacggca ctttctataa aattagcaga aattgaccta atccatgaag
     6181 aaactggcga atatccggtt cttcttctcg atgatgtgct tagtgaactc gatgattatc
     6241 gtcaatcgca tttgctcgga gctattgaag gaaaagtaca aacctttgta acgacaacaa
     6301 gtacgagcgg gatcgaccat gaaacgctca aacaagcaac aactttctat gtagaaaaag
     6361 gtacggtaaa aaaatcctaa tctaggttaa tataatttga tgaaaaagaa agtgcggtgg
     6421 aataattaat gtcagaagaa aatattacaa atgtacaaga aaatgcttca gattataacg
     6481 aagatcaaat acaagtactg gaaggtctag aggcagtaag gaaaagacct ggtatgtaca
     6541 ttggttcaac tagtcaacgc ggactccatc acctggtatg ggaaattgtt gataacgcaa
     6601 ttgatgaagc acttgctggt ttttgtacag aaattgaaat tacaatcgaa gctgataaca
     6661 gcattactgt tcgtgataac ggacgtggaa ttcctactgg gattaacgaa aaaattggtc
     6721 gtccaacagt agaagttatc tttaccgttc tacatgctgg tggtaaattt ggcggcggcg
     6781 gatataaagt atctggcgga cttcacggag ttggtgcatc ggtagttaat gccctttcca
     6841 catctcttga ggtatacgtt caccgtgaag gtcaaaaata ttaccaacgc tttgaacgtg
     6901 gtgatgtagt aatggatatg gaagaacaag gcgaaacgga ttaccgtgga acaattgttc
     6961 actttacgcc agatccacaa attttcacag aaacaacgga atttgatttt gatacacttc
     7021 gtactcgtac gcgcgaactt gctttcttga atcgtggttt aacgatttca attgaagaca
     7081 agcgcgaaga acacaaagtt cgtaaagatt tccactatga aggcggaatt cgttcttacg
     7141 tggagcattt aaataaagca aaagacgtta tccatgagcc accaatttat ttggaaggtg
     7201 aacgcgatga cattatggtt gagatttcca tgcaatataa tactggattc tcaagcaata
     7261 tcatttcatt cgcaaataac attcatacgt atgaaggcgg gactcacgaa tctggattta
     7321 aaacggcgtt aacacgtgtt attaatgact acgcgcgtcg taataaattg ttcaaagata
     7381 gtgatgataa cctttccggt gaagatgttc gtgaaggttt aacagcaatc atttccatca
     7441 aacacccaga tccacagttt gaaggacaaa caaaaacaaa acttggaaat tcagaagctc
     7501 gttcaatcac ggataagctg ttttctgagg ctttaaataa atttatgatg gaaaacccag
     7561 atgttgctaa aaaaatcgtt gagaagggcg ttgtagcttc tcgtgcacgt ctggctgcta
     7621 agcgcgcgcg tgaagttgct cgtaaaagca gtgggttaga aatttctagc ttgccaggta
     7681 aactagctga ctgttcttcc cgtaaccctg aaatcagcga actttacatc gttgagggtg
     7741 actcagctgg tggttcagct aaacaaggtc gtgaccgttt attccaagct attttgccga
     7801 ttcgtggtaa aattttgaac gtggagaaag cgcgtttaga ccgaatttta gctaacgaag
     7861 aaattcgaac tatttttacg gctatgggaa ctggttttgg tggagatttc gatgtttcta
     7921 aatctcgtta ccacaaatta attattatga ctgatgccga tgttgatggt gcacatattc
     7981 gtacactact tcttacgcta ttttatcgtt atatgcgccc actgcttgat gctggttata
     8041 tctatattgc acaaccaccg ctttatcaaa ttaagcacgg taaacaaata gaatatgtat
     8101 atagcgacgg acagttagaa gactatctag cttcccttga cggagacact aaatacagca
     8161 ttcaacgata taaaggtctt ggagaaatga acccagaaca actttgggat acaaccatga
     8221 atccggaaca ccgtacacta cttcaagtca atatcaaaga cgctattgat gccgatgaaa
     8281 cttttgaaat gttgatgggt gaccgcgtgg aacctcgtcg taaattcatc gaagacaacg
     8341 cgcaatacgt taaaaacttg gatgtttaat aaatatttcc cgggtaataa ttgggttatt
     8401 aattgttttt aaaaggtttg aactagattc agccttactt ttgaaaggga ggtttctcta
     8461 acaatggcag aaacaccaaa tcaacgaata acagagataa acttaaataa agaaatgcgg
     8521 acatcattcc tggactatgc gatgagtgta attgttgccc gtgccctacc agacgttcgt
     8581 gacggattaa aaccagttca tcgtcgtatt ctatatgcga tgaatgactt aggtatgact
     8641 tctgataagg cctataaaaa atcagctcgt atcgttggtg aagtaatcgg taagtatcac
     8701 ccccacggcg atacagcggt ttattttaca atggttcgga tggcgcaaga ttttagttac
     8761 cgtaatatgc tagttgatgg acatggtaac tttggttcgg tcgatggcga tatggcggca
     8821 gcgatgcgtt atacagaagc acgtatgtca aaaatttcga tggaacttct tcgcgatatt
     8881 aataaagata caattgatta tgctgataac tacgatggtt ctgaacgtga gccagtcatt
     8941 ttaccagcgc gtttccctaa cttacttgtc aatggttcgt caggtatcgc agttggtatg
     9001 gcaacaaaca ttcctaccca ccatcttggt gaagttattg acggcgtttt agcacttagt
     9061 catgatccgg atattactat tcgtgattta atggaatata tccctggccc tgacttccct
     9121 actgctggga tgattatggg gcgtagcgga atccgtcgcg cttacgaaag tggccgtggt
     9181 tcgattactg ttcgtggtcg tgtcgatatt gaagaaaaga aaaatggtaa agaaacaatc
     9241 gttattaccg aaattcctta ccaagtaaat aaagcgcgcc tagttgagcg tattgccgaa
     9301 ctagctcgtg agaagaaaat cgacggtatc acttccctaa acgatgaatc tgaccgttct
     9361 ggaatgcgca ttgttattga agttcgtcgt gatattagtg caagtgttat cgtgaataat
     9421 ttattcaaaa tgacagcact tcaaactact tttggtatta atatgctcgc acttgtcgac
     9481 aatcatccaa aagtacttaa tttaaaagaa attctttatc attatttaga gcatcaaaaa
     9541 gtagttattc ggcgccgtac ggaatttgag cttcgtaaag cagaagcacg cgctcacatt
     9601 ttagaaggtt tacgaattgc actagataat attgacgcga ttattaaatt aattcgtgga
     9661 tcaaaaactt ccgatgttgc taaagaaggc ttgatgacac aattcaacct ttcggacaaa
     9721 caagcgcaag ccattttaga catgcgtttg caacgtttaa caggtttgga acgcgaaaaa
     9781 attgaagaag aataccaaaa cttagtggca ttaattaatg atttaaaagc cattttagct
     9841 gatgatgagc gtattcttga aattattcgt gaagaattag aagaaatcaa agttaaatac
     9901 gcggataaac gtcgtacaga aatcttggct ggtgatttag taagccttga agatgaagac
     9961 ttaatccctg aagaagaagt ggcgattaca ctaactaaac gtggctatat taaacgttta
    10021 ccattatcaa cttatcgtag ccaacgtcgt ggtggtcgtg gtatccaagg tatgtctact
    10081 catgaagatg atttcgtaga acatcttgtt gcaacgagca cgcatgatac gttactattc
    10141 ttcactaaca caggtaaagt ttaccgttcg aaaggttatg aagtacctga atacggtcgt
    10201 accgccaaag gtatcccaat catcaactta cttggaatcg aaagccaaga acaagtgaat
    10261 gccgtgataa atctatccga attcactgat gatagctacc tattctttac tactaaacac
    10321 ggtgtcgtga agcgtacaac cctttctcaa tttgcgaaaa ttcgtcaaag tggtcttcgt
    10381 gcagttgaac ttcgcgaaaa cgatgaacta atctctgttc agatgacaga tggtagcaaa
    10441 aacatgatta tcgcaacgaa acatggacaa tctatctact tcccagaaga aaatatccgc
    10501 gtaatgggcc gtacagctgc tggtgttcgt ggtattagac ttcgtgaaga cgatgaagtt
    10561 atcggtatgg aagtccttga ggatgatgaa aaagttctcg ttgtaacgga aaaaggatac
    10621 ggtaaacaaa caccggcttc ccagtacccg cttcgtaatc gcggtggtat gggtgttaaa
    10681 accgttacaa tcacagagaa aaatggtaac ttagtcgcaa tgaaaacagt gactggtgaa
    10741 gaagacttaa tgctaatgac agtaagtggc gtattaattc gtttcgaaat tgatacagta
    10801 tcacaaacag gtcgtagcgc aatgggtgtc aaactaattc gtcttgatga agatgaaaaa
    10861 gtagctactg ttgcaaaagt gccaaaagaa gaagatgaag ttgagcttga ggaagaaatc
    10921 gatgaaacat taatcacaca agttcctgat gaaagttttg aagatgctcc tggaagcgat
    10981 atagaagaat aaaatcaagc tggagatgac tctaatttgc gaattagaac gattttccag
    11041 cttttttcca gtataaaaag cgctttttgg ctataattta tgtataatat ccttaatacg
    11101 tcttaaaaag ggaagagttg aacaaatgcg caaactgatt caatttctgt ttatagcagt
    11161 agttttattt ttagtggaat actttttaat caatcaagca gctatattat tcttagtaac
    11221 aagtggactt atccaattat gcggattaat tattgtgatt cggctactac tctttgatca
    11281 acggaatact agctcaaaag tcgcctggat tgcggttatt ttcattttac ctgtacttgg
    11341 aacgattagt taccttgtgt ttggtagaaa tccagcaact agaaaattca gcacagctca
    11401 agtaatggaa aaagctaaat taattaatgc gattcacgca attccaaaca acactaatga
    11461 aaaattacca cgactatcta aaagaattgc gcatttaacg tccatagagc caattaaggg
    11521 gaataaaatc gaaatattaa caaatggcga agaaactttt ccagtgctct tagacgcgct
    11581 tagaaaggct gaaaaccaca ttcatattca atactatatt ttcaaaacgg atgaaatttc
    11641 tacaaagatt cgtgatattt tggtagaaaa agcaaaagca ggcgttgaag ttagatttat
    11701 gtttgatggg cttggatcaa gcaaactggg taaagccttt ttagctcctt tgaaagaagc
    11761 tggagttagt attcacgcat ttgacccaat tacctctccc tggattgtaa gaacagccaa
    11821 tttaagaaat caccgtaaaa ttgtcgtgat tgatggtcaa attggcttta caggcgggct
    11881 taatattgga gaagaatatc gttctaatac accagatttc cgtgtttggc gcgatacaca
    11941 tattaaaatc acaggccaag ctgttatcga acttcaagaa tcttttctaa atgattgggt
    12001 ctatatggaa aaccaagcag gtgctgcaga tcaatttatt agtgaagctg gattacaaca
    12061 atatttttca ccagttgatg tgggtgacga atgggcgcaa gtgatttacg gcggaccata
    12121 tgataaagaa aaatgggttc gcgattcgat gcttgattta attgattccg ctaaagaatc
    12181 tgtttggatt gtgtcgcctt actttgttcc agatgaggag tcgcttgcag ttattcgccg
    12241 ggttgcgatg agcggtgttg acgtgcgagt tattattcca ggcaaaggtg atcgcgggat
    12301 ttcattccac ggaagtaatg cgtatgtgaa aacaatgatt gaagcaggcg cgaaaatgta
    12361 tgcttatgcc gatgattctt ttgttcatgc gaaggcaatg ctagtggacg ggacgcgtgc
    12421 agctataggt actgccaatt ttgacgtgcg tagttttaga ttgaatcatg aattaatggt
    12481 attcttatat gatgaaagcg aggctatgca tcatttaaaa cgtgattttg agaaagattt
    12541 tgaagatagc cgacttttta cgatgaaaga tatggaaaac aaaccattat tgactcgtat
    12601 aaaagaagtt ctatctagtt tactatcacc aattttataa tttaggagtg gaaaaatgag
    12661 tggagattta aaacttagac cgcttgaacg agaagattta aaatttgttc accggttaaa
    12721 taatgacgcg aaaataatgt cttattggtt tgaagagcca tatgaggcgt tcgtcgagct
    12781 tcaggagcta tatgataagc acattcacga tcagtcagaa cgccgtttta ttttagaatt
    12841 agatggtcaa atggttggac ttgtcgaatt gatggaaatt gattatattc accgaagagc
    12901 cgaatttcaa attattattg atcctaagtt tcaggggcac ggttacgctg tttctgccac
    12961 aaaactcgca atgaaatatg cttttcacgt a
//
LOCUS       DABQVC010000071        12962 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.071,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000071 DABQVC010000000
VERSION     DABQVC010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12962
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.071"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..554)
                     /locus_tag="IBJ56_001408"
     CDS             complement(<1..554)
                     /locus_tag="IBJ56_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4918 family protein"
                     /protein_id="HAM3417665.1"
                     /translation="MTENTTIAKRILQFNEALANSSFDLPEGYRTVNPYSGDQSELVQ
                     KITTTFYQKYYNDTKLRRIILGSSPARRGSAVTGVPFEDAKHLQNETGIFIDKFYINQ
                     SSSDFLYDVMTEYGGCEAFYTDFYMNFVCPLGIVRMNAKGNEVNCNYYENKKLQEALK
                     PIILESLQNQIDCGIDTSVCYCIG"
     gene            complement(578..1105)
                     /locus_tag="IBJ56_001409"
     CDS             complement(578..1105)
                     /locus_tag="IBJ56_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3417666.1"
                     /translation="MARLSQEIILNMAEKIIYEKGMEKTTLYDIAGNLNVTHAALYKH
                     YRNKEDLFQKLALRWLEETSREIFDWTQDAGQTPDDALHDWLWLLADTKKKRYKTDRK
                     MFLLYTDYIEQNEELVKNHVAHLAQKAEEVSGRTNQGNAIITAFTYFHNPYFASRWEQ
                     AGYAELFEDVWQIVK"
     gene            1266..1997
                     /locus_tag="IBJ56_001410"
     CDS             1266..1997
                     /locus_tag="IBJ56_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3417667.1"
                     /translation="MTNKRVAFILGGSGGIGKAVVNKLVEQNFAVVVHYSGNKAKAEA
                     LVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVVNTAGIMKLSPIATLD
                     MDEFDLIQRTNVRGTFVVSKQAALRVRDGGAIINFSTSVTRSSFPTYGAYVASKAGVE
                     SLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKATPLERLGQPEDIA
                     ETVAFLAGPARWVNGQVIFTNGGLA"
     gene            complement(2044..3237)
                     /locus_tag="IBJ56_001411"
     CDS             complement(2044..3237)
                     /locus_tag="IBJ56_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3417668.1"
                     /translation="MNQVKGEKHSLMVLLVLFIGYTSVYVDKYTIGISLVTVSQDLGF
                     DPSQKGLILSAFFLGYTLFQIPMGYLNNRIGARPVLAVSIIIVGLFLVIFGFGYSLLF
                     LVVIRFLSGALGHAGYPPSVSNYISLHIPLNKRGFAQSAMLASSGFAAFIGPLLIAQL
                     LLSVGWRNTYYWIGIAVILIGFLILIVVPKAPKIDLNAQKEKIKVPFSELLKDKQLWI
                     LLLSALFINAANYGLTSWLASYLNEVRGISISEVSYISSLAGLCILIAGVVGGYFISR
                     FFKGKEPIIIFAFCVLGAFAVYGVYLFEQLALSVICLCLCNIFLIMAFTTLMGLPHKL
                     FQQSHIATKYAAINSGGVLGGFFAPMIIGDLVNATNSYQSAFLFLALTLLASGLIVLA
                     IKKDQ"
     gene            complement(3325..4515)
                     /locus_tag="IBJ56_001412"
     CDS             complement(3325..4515)
                     /locus_tag="IBJ56_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAM3417669.1"
                     /translation="MRTKLMNMLQERKDEITQIRRHLHEHPELSFHEAETAKFIQDFY
                     KGKDVEVATEVGNGHAVVVTIKGGKPGKTIALRADFDALPIEEQTELPFKSKKPGVMH
                     ACGHDGHTAYLLVLADCLIQLKENIPGTIKIVHQHAEETPPGGAKSVVESGILDDVDQ
                     IFGIHVFPFGESGQVYYHSGFAMAGRTYFKLKIQGVGGHGSSPHMANDAIVAGAYFVT
                     AIQTVVSRRLNPFDTGVITIGSFDGKGSFNVIKDAVELEGDVRYMNTENRDKMDAEIH
                     RIVAGMEAMFGVTLELTYTNDYPPLYNDPAVTEQVVASLQKGVGEYLTGISEYDMLSG
                     SEDFAYYLQKIPGVFFYIGAKPKNTSNAYFNHHPKFDIDEDALLVAAKSVADVVLDYY
                     KLNG"
     gene            complement(4531..5931)
                     /locus_tag="IBJ56_001413"
     CDS             complement(4531..5931)
                     /locus_tag="IBJ56_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3417670.1"
                     /translation="MTSTAYKGTNKLIVGIVFGVITFWLFAQSMVNIVPAVQSDLGIS
                     SDLLSIAISLTALFSGIFIVVAGGMADKFGRVKLTYIGLILSIIGSLLLVVTQGATLL
                     IIGRIIQGLSAACIMPATLALMKTYFEGADRQRALSYWSIGSWGGSGICSFAGGAIAT
                     YMGWRWIFIISIVFALLGMLLIKGTPESKVVQNTKAKFDSFGLVLFVIAMVCLNLIIT
                     RGATFGWTSPITITMLVVFLISAGLFFRVELRQANGFIDFSLFKNKAYTGATLSNFLL
                     NAAAGTLVVANTYVQIGRGFTAFQSGLLSIGYLVCVLGMIRIGEKILQRVGARKPMIL
                     GSGITAVGIALMALTFIPGTLYTVLVFIGFALFGIGLGMYATPSTDTAISNAPEDKVG
                     VASGIYKMASSLGGSFGVAISATIYGVIALSGNIDLAAMVGLLTNVGFCVVSLISVAI
                     TTPSAKKALELKAAKE"
     gene            complement(5931..7133)
                     /locus_tag="IBJ56_001414"
     CDS             complement(5931..7133)
                     /locus_tag="IBJ56_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAM3417671.1"
                     /translation="MEVWTMKEKLFQKLDEKRDRMIEIRRYLHEHPELSFQEENTAKY
                     IADFYKEMDCDVRTHVGGNGVVVTIDTGKPGKTLAIRADFDALPITEETGLAFASKNP
                     GVMHACGHDGHTAYMLILGETLIEMKQELTGKIVILHQHAEETPPGGAIQMIQDGALD
                     GVDNVLGIHVMSTMKTGEVFYREGAIQTGRSYFKLKVQGQGGHGSSPHLANDAIVAAS
                     EFVVAVQTVISRRLNPFDVGSITIGSFDGKGSFNVIKDAVELEGDVRSMSEEARNIIQ
                     KEITRIVSGIEAMFGVTCELDYKNDYPVLNNDEALTDFVVKSIKGAKIPEITDVVRCE
                     PQPPSEDFAYYAKERPSSFFYVGAMPADGHFYPHHHPKFDINEDSLLIASKAMGACVV
                     DYLKGENN"
     gene            complement(7327..9669)
                     /locus_tag="IBJ56_001415"
     CDS             complement(7327..9669)
                     /locus_tag="IBJ56_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014589156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3417672.1"
                     /translation="MSHLKDYTIGIQHIKQLTSEISLGTKLVFAISGQITIKVSEQKF
                     YLQEGDVLVLDRNTFYTIEGNEDNLFINLTISDTFFAHYYEDYFQHSFKFFSKESDPG
                     RERVVGSLRKSVSELLIASATKKRANKLEAQSALFQILLLLTRFLKKGIPSSARKEVN
                     DKRISRIIREVEERFDEALSLREFAQKEFLSEAYLSRYFKKTTGLGFLQYLTEVRLKH
                     AIQDLLHSAESITEIALKNGFSSQKHFSEVFKFHFELTPSEYRAEHHVETNLLIDNKT
                     SELGASIEQIVPSPEILVKLSRLYHDVEPGKELNKAPFEKKKIDITEKTERCLSENMN
                     ILTIGELKEVLKDNVQKQIITTRDEIGINYIGIRHLFRGSTFLPETETDELVPTSSPY
                     ANADLALTFLKQQNLQLFIRLEYQDIVGDEAAVFERLDHFLKHCMQVFGREFVSKWHF
                     MFFEPKNTYADKEELKKLYLKIYHTIKSRFPAIQVGNFVPFSLSKNAVPERHTWFLEE
                     ADKMDFVAYNANQNEAVDFSKEDMKSFSISEDYCLSKTLQLKAFLKHHHINKPLMLVN
                     WNTLSGNTRYTNGTFFRGALVLKTMLDLVPEVDALGFWINTELHEGDDSKLNISLDGI
                     EMFHFFNGKRPAFYAVKFLRRLKGVVVAKGEDYIMTKHADGYQLILMNCATINPRYSV
                     EERFIKEEQKEVHIRLTGLHAGDYQVCKWQFDRDNGALYSKYWQLNSKYGLDKEILDY
                     IVDASQPTLTVSDETITEDWSFYAYLDINAIHFYEFRSTV"
     gene            9882..12632
                     /locus_tag="IBJ56_001416"
     CDS             9882..12632
                     /locus_tag="IBJ56_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3417673.1"
                     /translation="MKTSKIIIASLVSLTLVSNPILTFAATNDVIDSTTEITTDKETS
                     STQPTIKTTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHN
                     SSIADMTGIEKLTGLTKLICTYNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLT
                     YLNCDTNKLTKIDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT
                     PQTQLTTLDCSFNKITALDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT
                     EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE
                     GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTKLDVSHNTKL
                     KSLSCVNAHIQDFSSVGKIPVLNNNLDAEGQTITMPKETLTNNSLTIAVSPDLLDQFG
                     NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPIK
                     GEDVTVHYLDDKGEKLAADEVLSGNLDDPYTSSAKDIPDYTLTTTPDNATGTFTTTSQ
                     SVTYVYTKNIVAAEPVTVNYVDDTGKTLAPSETLNGNVGDTYNATAKQIDGYTLSTTP
                     NNATGTFNTSSQTVTYVYTKNIVAAEPVTVNYVDDTGKTLAPSETLNGNVGDTYNATA
                     KQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNPTPEKGVVEIHYVDENNKQLSSATK
                     ISGTVGDNYTTEPKNIDGYTLTTTPDNATGTFNTSSQTVTYVYTKNIVAAEPVTVNYV
                     DANGKTLAPSETLNGTIGDTYNATAKQIDGYTLSAEPTNATGQFTNSAQTVNYIYTKN
                     TNIDQPLPDKRTTKPSNLKTTEVKKASDTLPKTGDSAPWKSALLGVFLSSTALVIWKK
                     KK"
     gene            complement(12677..>12962)
                     /locus_tag="IBJ56_001417"
     CDS             complement(12677..>12962)
                     /locus_tag="IBJ56_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="arsenic metallochaperone ArsD family protein"
                     /protein_id="HAM3417674.1"
                     /translation="SEINLEIWKVFMNKSEAERKIHFDYTGIVFDIKLGEVGKVDLPE
                     RVQMLIDKNGMEALPILVVDDAVYNYGEFSVIDAVEELLDVGVSIQVEED"
BASE COUNT         4266 a         2918 c         2135 g         3643 t
ORIGIN      
        1 ctgccaatgc agtaacagac cgaagtatct atcccgcaat ctatttggtt ttgaagtgat
       61 tctaaaataa ttggcttcag cgcctcttgt agtttcttat tctcataata gttgcaatta
      121 acctcattgc cttttgcatt catacgaaca ataccaagcg ggcagacaaa attcatataa
      181 aaatcagtat aaaatgcctc acaaccgccg tattctgtca taacatcata taaaaaatct
      241 gaggaagact ggtttatata aaatttatca ataaaaatac cggtttcgtt ttgaaggtgt
      301 tttgcgtctt caaaaggaac gcctgtcaca gcagaacctc tccgcgcggg agaacttcca
      361 agtattatcc ggcgcagttt agtatcatta tagtatttct gataaaatgt ggtcgttatt
      421 ttttgcacta gttcgctttg atcaccagaa tatgggttaa cggtgcgata cccctccggc
      481 aaatcaaacg aactattcgc aagcgcctca ttaaactgca atattcgttt agcaatagtt
      541 gtattttcag tcatgtaaat tagccctctc tttattttta tttcacaatc tgccaaacat
      601 cctcaaataa ctccgcataa cccgcttgtt cccacctgct tgcaaaataa ggattatgaa
      661 aataagtgaa cgccgtaata atcgcgtttc cttggttcgt tcgaccgctc acttcttcgg
      721 ctttttgtgc taaatgggct acgtggtttt tcactaattc ttcattttgt tcaatataat
      781 ccgtataaag taaaaacatt tttcggtcgg ttttgtatcg ttttttctta gtatcggcca
      841 agagccaaag ccagtcgtga agcgcatcat ctggtgtttg ccctgcgtcc tgtgtccaat
      901 cgaaaatctc ccgcgaagtt tcctctaacc aacgtagcgc caatttttga aataaatcct
      961 ctttatttcg ataatgctta taaagtgccg catgtgtgac gttcaaatta cccgcaatat
     1021 catacagcgt cgttttttcc atgccttttt cgtaaatgat tttctctgcc atatttaaaa
     1081 taatttcttg tgatagtctc gccattttaa cccctcgatt caactcattc tttgcttttt
     1141 attatacagg aaaacagaaa agttacaaat ccttgacaaa gtaactaaaa ggagtatact
     1201 tccaactata aagttactaa aattaaaaaa agtaaccatt ttgaatttaa aggagcgaat
     1261 agattatgac aaataaacgt gttgcattta ttttaggggg ttctggcggt attggtaagg
     1321 ccgtcgtcaa caaattggtc gaacaaaatt ttgctgttgt ggttcattat tcgggtaata
     1381 aggctaaagc cgaggcgctt gttgaaaaca ttgtgaagtc tggtggagaa gcgattagtg
     1441 ttggcggcga tgttgctgac gaggcgcaga tgattcgtgc atttgatttc attgaaagcc
     1501 agtttggtgg aattgatgtt gtcgttaaca cggcaggtat tatgaaatta agtccgattg
     1561 ctactttgga tatggatgaa tttgacctga ttcagcgaac caatgtccgg ggcacttttg
     1621 tcgtttccaa gcaagctgcc ctcagagttc gagatggcgg cgcgattatc aatttctcca
     1681 cttcggtaac gcgaagcagt tttccgactt acggggccta cgttgctagt aaggccgggg
     1741 ttgagtcgct cacattaatt ctggcgcgcg agcttcgtgg gaaagatata accgttaatg
     1801 cagtagcacc tggcccgacc gccactccgt tatttttgac tggaaaagac gataaaacaa
     1861 ttgacaactt agcaaaagcc acacctttag aacgcctagg acaacctgaa gatatcgcag
     1921 aaaccgtagc atttttagcc ggacctgcac gctgggtgaa tggtcaagtc attttcacca
     1981 atggaggatt agcttaatta aaaaaggagg aaaacagagc tatctggttt tcctcctttt
     2041 attttattgg tcttttttaa tcgctaaaac aatcaatccc gatgctaata aagttaacgc
     2101 caagaacaga aaagccgatt gataagagtt agtcgcgttt accaaatccc ctataatcat
     2161 cggtgcaaaa aagccaccta aaactccgcc cgagtttata gccgcgtatt ttgttgcaat
     2221 gtggctctgc tgaaacaact tgtgcggcaa tcccattagc gttgtaaagg ccatgattag
     2281 gaatatatta cataaacaca agcaaataac cgatagcgct aattgttcaa ataaatacac
     2341 cccgtatacc gcgaacgctc caagcacaca aaatgcgaaa ataataatcg gctcttttcc
     2401 tttgaaaaaa cgactaatga aatagccacc gacaactcct gcaattaaaa tacaaaggcc
     2461 agctaaagag ctaatatagc tcacttcgct aatagaaatc cctctaacct cattcaaata
     2521 agaagcaagc caacttgtta aaccgtagtt cgctgcattt ataaaaagcg ctgatagcaa
     2581 aagaatccaa agctgtttat ctttcaaaag ttctgagaaa ggtactttga ttttttcttt
     2641 ttgagcattt aggtctattt tcggcgcttt aggtacgaca attaaaatca gaaagccaat
     2701 caaaatcacc gcaataccaa tccagtaata tgtattgcgc caacccactg atagcaacag
     2761 ttgcgcgatt aacaatggcc caataaatgc cgcaaaacca gaggaagcga gcattgcgga
     2821 ctgagcaaaa cctcgcttgt tcaacggaat atgaagtgaa atataattgc tgacagacgg
     2881 gggataaccc gcgtgtccaa gtgctccgga taagaaacga ataacaacca aaaacaacaa
     2941 ggaatagcca aagccaaaaa taacaagaaa tagcccgaca ataataattg ataccgcaag
     3001 aactggtcgt gcgccaatcc gattgtttaa ataccccatt ggaatttgaa aaagtgtgta
     3061 accaagaaag aaggcactta aaatcaaccc cttttgactt ggatcaaatc ctaaatcctg
     3121 agaaacagtc acaagcgaaa ttccaatagt atatttatcc acgtatacac tagtgtagcc
     3181 tataaataga acaagtaaca ccattaacga atgcttttct ccttttacct gattcatttg
     3241 aattcactcc actcttctat agtcccgcca attgcaaaag agcataacca gattcttttt
     3301 ctgactatgc tcttttcaaa gctattatcc atttaattta taataatcta aaaccacgtc
     3361 cgccaccgat ttggcagcaa ctaacaacgc atcttcatct atatcaaatt ttggatgatg
     3421 attaaaataa gcattcgaag tatttttcgg tttcgcgcca atatagaaga agactccagg
     3481 aattttttgt aaataataag caaaatcctc tgatccggaa agcatgtcgt attcagaaat
     3541 gcccgttaag tactcgccaa cacctttttg caaacttgca actacttgtt ctgttacagc
     3601 tggatcgttg taaagtggtg ggtagtcgtt cgtgtacgtt agttccaacg ttacaccaaa
     3661 catcgcttcc ataccagcaa caatgcggtg gatttctgca tccattttat cacggttttc
     3721 agtattcata taacgcacat cgccttctag ctccactgca tctttaataa cgttaaaact
     3781 acctttacca tcgaaagaac caatcgttat aacgcccgta tcaaatgggt tcaaacggcg
     3841 gctcaccact gtttgaatgg ccgtcacaaa ataagcaccc gcgacaatcg catcattcgc
     3901 catatgtgga gacgaaccat gcccgccaac accttgaatt ttaagtttaa aataagtgcg
     3961 accagccatc gcgaagccac tatgataata aacttggccg ctttcaccaa atggaaatac
     4021 gtgaatacca aaaatttgat ccacatcatc taaaatacca gattcgacaa cacttttcgc
     4081 tccgccgggt ggtgtttctt cggcatgttg atgaacaatt tttatcgttc cagggatgtt
     4141 ttcttttagt tggattaaac aatctgccaa aacgagtaaa taagcagtat gtccgtcatg
     4201 accacatgca tgcattacgc caggtttttt agatttaaat ggtaattccg tttgttcttc
     4261 aatgggaaga gcatcaaaat cggcacgtaa cgcaatcgtt ttccccggtt tcccgccttt
     4321 aatcgttaca acaaccgcat gaccatttcc cacttcggtt gccacttcta cgtcttttcc
     4381 tttataaaaa tcttggatga actttgcggt ttctgcttca tggaacgata attcaggatg
     4441 ttcgtgcaaa tgacgtctaa tctgagtgat ttcatctttt cgttcctgaa gcatattcat
     4501 taacttggta cgcatgataa atccaacctc ctattctttt gcggctttta attcgagcgc
     4561 ttttttcgca gacggtgttg ttatagcaac ggaaataagt gacacgacac aaaaaccgac
     4621 gttagttaaa agccccacca ttgcggctaa atcaatattt ccagaaagtg caatcacacc
     4681 ataaatcgta gcagaaattg ccacaccgaa tgagccacct aacgaacttg ccattttgta
     4741 aatacctgat gctactccga ctttatcttc tggagcatta gagatagctg tatctgtgga
     4801 aggagttgca tacataccaa gtccaatccc gaataaagca aaaccgataa acacaagcac
     4861 cgtataaagg gttcctggaa taaaagtgag cgccattaaa gcaataccaa cagccgtaat
     4921 accagagcct aaaatcattg gtttacgcgc gccaactcgt tgaagaattt tttcaccaat
     4981 acgaatcatt ccaagcacac agacaaggta accgatagaa agtaaaccgg attggaatgc
     5041 tgtaaaaccg cgaccaattt gcacataagt atttgcaaca actagtgttc cagcagctgc
     5101 atttaacaag aagttggaaa gtgtcgcacc agtataagct ttatttttaa ataacgagaa
     5161 atcaataaat ccgttcgctt gtcgtaattc cactcggaaa aataatcccg cagaaataag
     5221 gaaaacaacg agcattgtaa tagtaattgg gcttgtccag ccaaatgtag ccccacgagt
     5281 aatgataagg ttcaaacaaa ccattgcgat aacaaaaaga acaagaccaa atgaatcaaa
     5341 ttttgctttt gtattttgaa cgactttact ttctggagta cctttaataa gtagcattcc
     5401 aagcagtgcg aatacgatgg aaataatgaa aatccagcgc cagcccatgt atgttgcgat
     5461 agctccacct gcgaatgaac aaatacctga tccaccccat gagccaatcg accagtaact
     5521 aagcgctctt tgtctatcag ccccttcaaa ataagttttc attaaggcca gggttgctgg
     5581 cataatacaa gcagctgaaa gcccttgaat aatacggccg ataataagta acgtcgcccc
     5641 ttgagtgaca acaagtaaca gtgaaccgat gatactaaga ataagtccga tataagttaa
     5701 tttcacgcga ccaaatttgt cagccatacc gcccgctaca acgataaaaa tacctgaaaa
     5761 tagcgcggtt aaactgatgg caatactaag taaatcagag gaaattccaa ggtcagattg
     5821 cacggccgga acgatattca ccattgattg tgcgaaaagc caaaacgtga taaccccgaa
     5881 aacaatccca acaataagtt tatttgtacc tttatacgct gttgaagtca ttagttattc
     5941 tctcctttta agtaatctac aacacaagct cccatggctt ttgatgcaat taataatgaa
     6001 tcttcattga tgtcaaattt tggatgatga tgcggataaa aatgcccatc tgccggcatc
     6061 gctcccacat agaaaaatga gctcggacgt tcttttgcat aataagcaaa gtcttctgat
     6121 ggtggttgcg gttcacagcg cacaacatct gtaatttctg gaattttcgc ccctttaata
     6181 gatttaacaa caaaatcagt caaagcttcg tcattattta aaacaggata atcatttttg
     6241 taatcaagtt cacaagtaac gccaaacatt gcctctattc cgctaacgat acgggtaatt
     6301 tctttttgaa taatgttgcg tgcctcttca gacatagagc gcacatcgcc ttcaagctca
     6361 accgcatcct tgatgacatt aaagctacct tttccatcaa aagaaccaat tgtaatcgaa
     6421 ccaacatcaa atggatttaa acgacgacta atcaccgttt gaacagctac tacaaattca
     6481 cttgctgcaa caatagcatc attcgctaaa tgcggagatg agccatgtcc accttgacct
     6541 tgtactttaa gtttgaaata agagcgacca gtttgaattg caccctcacg gtagaaaact
     6601 tcacccgttt tcatcgtaga catcacatga atcccaagga cattatcaac accatccagc
     6661 gccccgtctt gaatcatttg aatcgcgcca ccaggaggag tttcttccgc atgctgatgt
     6721 aaaataacta ttttcccggt taattcttgt ttcatttcaa taagtgtttc gcccaaaata
     6781 agcatgtaag ctgtatgtcc atcgtgacca caagcgtgca ttacaccagg gtttttagat
     6841 gcaaaagcta gaccagtttc ttccgttatc ggcagtgcat caaaatctgc acgaatcgca
     6901 agtgtcttgc ccggcttgcc tgtatcaatc gttactacaa cgccattccc accaacatgc
     6961 gtccgcacat cgcagtccat ttctttataa aaatccgcaa tatacttcgc cgtattttcc
     7021 tcttgaaaag aaagttcagg gtgttcatgt aagtaacgac gaatttctat catgcgatct
     7081 cgtttttcgt ctagtttttg aaataacttc tctttcattg tccaaacctc catttttaat
     7141 acttccgctg gccagaactt ccgtattttc actacaactt aattataaaa aaaaccaagc
     7201 gaaaagaagt ttactttttt gcttagtttt agcttgaaat tttcttcttt tgtaaattac
     7261 tcaaaccaat gtcaaaaatc cggtgctgaa gtcacaaaaa aagctcaact gctagagttg
     7321 aactttttaa accgtacttc taaactcata aaaatgaatc gcattaatat ctaaataagc
     7381 ataaaacgac caatcttccg taatcgtttc atcactcacc gtaagtgtag gctgagaggc
     7441 atccacaata tagtccaaaa tctctttatc tagcccatac ttactgttca gttgccaata
     7501 cttcgaataa agtgccccat tgtcacggtc gaattgccat ttacagactt gataatcacc
     7561 cgcgtgaagc cctgtaagtc taatatgcac ttctttttgt tcttccttaa tgaacctttc
     7621 ctctacagaa taacgcggat taatcgtcgc acagttcatc aaaataagct gataaccgtc
     7681 cgcgtgcttc gtcataatat aatcttcacc tttagcaacc acaacaccct taagccttct
     7741 caaaaacttc acagcataaa acgccggtcg tttaccattg aaaaagtgga acatttcaat
     7801 tccatcaaga ctaatattta atttgctatc gtccccttcg tgaagttccg tattaatcca
     7861 aaagcccaat gcatccactt ctggtaccaa atctagcatc gttttcaaaa ctaatgctcc
     7921 tctgaaaaaa gtcccgtttg tgtatctcgt attcccagat aatgtgttcc agtttactaa
     7981 cattagcggc ttattgatat gatgatgttt caagaaagcc tttaattgaa gcgtttttga
     8041 caaacaataa tcctctgaaa tcgaaaacga cttcatatcc tctttcgaaa aatctaccgc
     8101 ttcattttga ttcgcattat aggcgacaaa gtccatttta tccgcttctt ctaaaaacca
     8161 cgtatgtcgt tcaggcactg catttttaga caatgaaaat gggacaaaat ttccgacttg
     8221 gatagctgga aaacgcgatt ttatagtgtg atatattttc aaataaagtt ttttcagttc
     8281 ttccttatca gcatatgtat ttttcggttc aaaaaacata aaatgccatt ttgaaacaaa
     8341 ttcccgccca aaaacctgca tacaatgctt taaaaagtga tccaatcgtt caaaaacagc
     8401 cgcctcatcg cctacaatat cttgatactc caagcgaata aacaattgta aattttgctg
     8461 ttttaaaaaa gtgagcgcta aatccgcatt cgcatatgga gaagaagttg gcactaattc
     8521 gtccgtttcc gtttcaggca agaacgtcga acctctaaac aaatgacgaa taccaatata
     8581 attaatccca atctcatcac gcgtcgtaat aatctgcttt tggacattat ctttaagcac
     8641 ttctttaagc tcaccaatcg tcaaaatatt catattctca cttaaacaac gttcggtctt
     8701 ttccgtgata tcaattttct ttttctcaaa tggcgcttta tttaattcct tacccggctc
     8761 cacatcatga taaagtcgtg acaatttcac taaaatttcc ggagatggca caatctgctc
     8821 tatactagcg cccagctcag atgtcttatt gtctattaac aaattcgttt ccacatgatg
     8881 ttccgctcgg tattcacttg gcgttagctc aaaatgaaac ttaaatactt ctgaaaaatg
     8941 cttttggctc gaaaaaccat tttttaacgc aatctctgta atactttccg ccgaatgtag
     9001 taaatcttga atcgcatgct tcaatcggac ttctgtcaaa tactgtaaaa aaccaagccc
     9061 cgtcgtcttt ttaaaataac gtgataagta cgcctcactt aaaaactctt tttgcgcaaa
     9121 ctcacgaagc gacaaggctt catcaaaccg ctcttccact tctcgaataa tgcgcgaaat
     9181 ccgtttatca ttgacttctt tcctagcaga agatggaatt ccttttttca aaaaacgcgt
     9241 aagtaataat aaaatttgga acaacgccga ttgcgcttct aatttattcg ctcgtttctt
     9301 cgtcgccgaa gcaatcaaaa gctcactcac cgacttcctc aaagacccaa caacccgctc
     9361 tctcccaggg tcactctcct tcgagaaaaa tttaaaagaa tgctgaaaat aatcctcata
     9421 ataatgcgca aaaaatgtat ctgaaatcgt taaattaata aataaattat cttcatttcc
     9481 ctcaattgta taaaaggtat tgcgatcaag aactaaaaca tcgccttcct gcaagtaaaa
     9541 tttttgctca gaaaccttga ttgttatttg tccagaaata gcaaatacca atttagttcc
     9601 aagtgatatt tccgacgtca gctgctttat atgttgaata ccaatcgtat aatcttttaa
     9661 atgagacact cgattcaccc cttcgtttaa cttaatcgga cacttttata ttatcatagt
     9721 cgtgaaaatt aatcgctatc agtttttatg attgttttag tcattaaacc gacacaatcg
     9781 agtcacatat atccggaatt tttgtacttt tgcgagacaa aatgataaat aaaacggcgt
     9841 ataataaatg attgtagaaa acgaataagg agtgcgccaa attgaaaact tctaaaataa
     9901 taatagcttc attagttagt ttaaccctgg tttcaaaccc aattttaaca ttcgcagcaa
     9961 cgaatgatgt gattgatagt acgacagaaa tcactactga taaagaaaca agctccactc
    10021 aaccaactat taaaaccaca ctcaaagctg gtcaaacaca aagttttaac gactggtttc
    10081 ctgatgacaa ttttgcttca gaggtagcag cagcatttga aatgcaagca actgacacta
    10141 tcagcgaaga acaacttgct actctaacaa gcctagattg ccacaattct tccatagccg
    10201 atatgactgg tattgaaaaa ttaactggtt taacaaaatt aatttgcacg tataataaca
    10261 ttactactct tgatcttagc caaaacacta atttaactta tctggcatgt gattcaaata
    10321 aacttacaaa ccttgatgta accccgctta caaaattaac ctacttaaat tgcgacacga
    10381 acaaactcac aaagatagat gtaagtcaaa atccattgtt aacttattta aactgcgcac
    10441 gcaacacctt aaccgaaata gatgtcagcc acaatacaca attaactgag ctagactgcc
    10501 atttaaataa aaaaatcacc aaattagatg tgacaccaca aactcaatta acaaccttag
    10561 actgtagctt taataaaata actgcattag atgtaagtca aaataaatta ctgaaccgtc
    10621 taaactgcga cactaataat ataactaaac tggacctcaa ccaaaatatt cagctaactt
    10681 tcctagattg ctccagtaac aaattaaccg aaatagatgt aaccccgctt acacagttaa
    10741 catattttga ttgtagcgta aatcctttaa ctgaattaga tgtgtctacg ctttcaaaat
    10801 taactacact acactgtata caaacagatt tattagaaat agacctaaca cacaacacac
    10861 aattaatata ttttcaagct gaaggatgta gaaaaataaa agagcttgat gtcacgcata
    10921 atacacaatt atatttatta gactgccaag ccgctggtat aacagaattg gatctttcac
    10981 aaaaccccaa attagtctat ttgtatttaa ataatactga actaacgaaa ttagacgttt
    11041 ctcataacac aaagctgaaa agtttgtctt gcgtaaatgc tcacatccaa gacttctctt
    11101 ctgtaggtaa aattcctgtc cttaacaata acttggatgc tgaagggcaa acaatcacga
    11161 tgcctaaaga aactttaaca aacaacagtt taaccattgc agttagtcct gatttattag
    11221 atcagtttgg aaatccgatg aatattgaac cgggagacgg cggtgtatac gatcaagcaa
    11281 caaatacaat aacttgggaa aatctcagca cagacaatcc agccgtaacc tatactttca
    11341 cttccgaaaa cggagctata gtaggaaccg taacaactcc atttgaagcc cctcaaccca
    11401 tcaaaggaga agacgtaaca gttcattatc ttgatgacaa aggagaaaaa ttggcggctg
    11461 atgaagtttt aagcggtaat ttggacgatc cttatacttc tagcgcgaaa gacatcccag
    11521 attatacatt aacgactact ccagataacg ccactggaac attcactact actagccagt
    11581 ccgtaacgta cgtgtacact aaaaacatcg tagccgcaga gcctgtaaca gtgaattacg
    11641 tggatgatac tggaaaaaca ctcgctccat ccgaaacatt aaacggaaat gtaggcgaca
    11701 catataacgc cactgccaaa caaatcgacg gctatacatt atcaactaca ccaaataacg
    11761 caaccggaac attcaacaca agtagccaaa cagtgacata tgtgtacact aaaaacatcg
    11821 tagccgcaga gcctgtaacc gttaattacg tggacgatac tggaaaaacg ctcgctccat
    11881 ccgaaacatt aaacggaaat gtaggcgaca cctataacgc cactgccaaa caaatcgacg
    11941 gctatacatt atccgccgaa ccaaccaatg caactggaca attcacaagt agcgcgcaaa
    12001 ccgtcaacta tatttacaca aaaaatccaa cccctgaaaa aggagttgta gaaattcact
    12061 atgttgacga aaataataaa caactgagct ccgccactaa aatttctgga acagtaggag
    12121 ataattacac aactgagcca aaaaatatcg acggctatac gctaacaact acaccagata
    12181 acgcaaccgg aacattcaac acaagtagcc aaacagtgac atatgtgtat actaaaaata
    12241 tcgtagcagc agagcctgta acagtgaatt acgtggatgc taatggcaaa acgctcgctc
    12301 catccgaaac cctaaacgga actattggcg acacatataa cgccactgcc aaacaaatcg
    12361 acggctacac attatccgcc gaaccaacca atgcgactgg acaattcaca aatagcgcac
    12421 aaactgtcaa ctacatttac acgaaaaaca caaacatcga ccaaccttta ccagataaaa
    12481 gaacaacgaa accgtctaat ttaaagacaa ccgaagtgaa aaaagcttca gataccctac
    12541 caaaaacagg cgattccgca ccatggaaat cagctctact tggggtcttc ctatcatcca
    12601 cagctctagt tatctggaaa aagaaaaaat agtaaaaaag ccggccagga ttaatttccc
    12661 gaccggcttt ttgatctcaa tcttcttcca cttggataga aacacccaca tccagtaatt
    12721 cctcaactgc atcaatcaca gaaaactccc cataattgta tactgcatca tctacaacta
    12781 aaatcggcaa agcttccatt ccatttttat caatcagcat ttgaacccgc tctggcaagt
    12841 ccactttccc gacctctccc agcttaatat caaacacaat acctgtataa tcaaaatgaa
    12901 tttttcgctc agcttcactt ttattcataa acactttcca tatctcaagg ttgatctcag
    12961 ac
//
LOCUS       DABQVC010000072        12945 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.072,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000072 DABQVC010000000
VERSION     DABQVC010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12945
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.072"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..962
                     /gene="mltG"
                     /locus_tag="IBJ56_001418"
     CDS             <1..962
                     /gene="mltG"
                     /locus_tag="IBJ56_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HAM3417675.1"
                     /translation="KDEASKEKITVEIPAGSSISDISTILEDKKVINNASIFSFYVKY
                     NNDTNLKAGNYEFSPSMNTDQIVKKMQEGKTVAPAKLVIPEGYTLDQIADRIVAYQPK
                     LKKADVLKTMDDPEFVASMIKAYPDTVTNDVLNKSIKHPLEGYLYPATYTFKGTDVSA
                     EQIITEMVKATDVNIAKYRDELTKQKMSVHKFLTMSSIIEKEATENVDRKMIASVFYN
                     RLAKDMRLQTDPTVLYALGEHKSKTTYKDLEVDSPYNTYKNNGLPPGPISNSGDSSME
                     AALYPEKSDYLYFLANTKTGKVYFSKTLEEHNKLKEEHITKNN"
     gene            1038..1691
                     /locus_tag="IBJ56_001419"
     CDS             1038..1691
                     /locus_tag="IBJ56_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HAM3417676.1"
                     /translation="MNDIIHDYLLKNIPKSSPFFEELEAYAKENEVPIMEPDSLYCLL
                     QILDIQKPKRILELGTAIGYSALKMADKLPDAEIITVERDEERYEQAIHNIQRYGAND
                     RVKVLLTDAIEGAEEILAHGPFDAIFIDAAKAQYEKFFHIYTDSLAENGVIYSDNVLF
                     KGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS"
     gene            1688..2317
                     /gene="udk"
                     /locus_tag="IBJ56_001420"
     CDS             1688..2317
                     /gene="udk"
                     /locus_tag="IBJ56_001420"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HAM3417677.1"
                     /translation="MTKKPIVVGVTGGSGSGKTSVTKAICDHFSGHSILMIAQDVYYH
                     DQANISFEDRLKVNYDHPLAFDTDLLISHIAALRRYETIEKPIYDYAKYTRKKEVEIQ
                     EPREVIILEGILILEDKRLRDLMDIKVYVDTDDDIRFIRRLLRDMKERGRTMDSVIEQ
                     YLSVVKPMHNEFIEPTKKFADIIIPEGGENHVAIDLMTTKIESILQKHV"
     gene            2511..2993
                     /gene="greA"
                     /locus_tag="IBJ56_001421"
     CDS             2511..2993
                     /gene="greA"
                     /locus_tag="IBJ56_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HAM3417678.1"
                     /translation="MATEKVFPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGD
                     LSENSEYDSAKDEQAFVEGRITTIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDG
                     EEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTPAGDMSVKIEKITAS
                     "
     gene            3044..3667
                     /locus_tag="IBJ56_001422"
     CDS             3044..3667
                     /locus_tag="IBJ56_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1510 family protein"
                     /protein_id="HAM3417679.1"
                     /translation="MADKRQSNNRRIKQNLVEGSRSQQNTKRKKTNLVLNVLIIVVSL
                     LIIGSLYFVLFKTESDPTQQDNKTASSTAKKEDAAKSSEKKKDSSDDKTTETTESDDP
                     NVAKVITKDWKPIGTEQTGDHVNSYSSTSIDWQEKRKAFSAATDIPISNTSLWFVEQG
                     ADPATQAIGTLSTKENPDKAYRVYITWVDGEGWQPTKVEELKTNDKR"
     gene            3717..4418
                     /locus_tag="IBJ56_001423"
     CDS             3717..4418
                     /locus_tag="IBJ56_001423"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HAM3417680.1"
                     /translation="MTIGIIGAMEEEVELLKNSMPSVEEIVIGGAKFYVGEIAGKEVV
                     LLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDV
                     TEFGYTYGQVPRMPAFYQGDAVLLKKAETIYREYFAASENKAVYGLVVTNDSFIMRPD
                     QHETIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLA
                     AKQSATCIIELLKTI"
     gene            complement(4454..6262)
                     /locus_tag="IBJ56_001424"
     CDS             complement(4454..6262)
                     /locus_tag="IBJ56_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HAM3417681.1"
                     /translation="MSKDYALTWDLENIYAGGSGSEELQQTLQEVKADLDSFVVNVSE
                     WDVPENVEASAEFLLLVNQNADISKILLTAGSFLECLASADINDSRANELSALIYQYV
                     ATLATAEDEWHDKFAQVSDRVWDELMEQNGLSQISFILSEARTNRRKKGSKEQEAAIN
                     SLAVDGYRGWSDHYDTIVGKLRMHVTINGEEKDISAGQALNLLNHPDRAVRQAVFKEY
                     TRVWQSEARLFSDTLNHLSGFRLATYEIRKWDNILDEPLAINRLDEQTLKSMWNVIQT
                     NKPTFVRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYSYQEGAEFIIEQFNKFSPK
                     MANFAQSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELG
                     HAFHSHVIRDEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGR
                     SIAFFMNIHARFIFECNFYEARKQGVVSVDRLNALMEEAQREAYLDALDEYHPQFWAS
                     KLHFYIADVPFYNFPYTFGYLFSLGIYHKAQAEGASYEDKYIALLQDTGSMTTEQLAE
                     KHLGVDLRKADFWEEAVALAAKDVEDFLTLTEEYIK"
     gene            6424..6945
                     /locus_tag="IBJ56_001425"
     CDS             6424..6945
                     /locus_tag="IBJ56_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HAM3417682.1"
                     /translation="MLKQFSPDKMLNTPFGITAAQLRKMGKTTILTDLDNTLLAWDQL
                     DATDEVINWFTILKEEGIKVMIFSNNNEERVARVAKAIDVPYLARAKKPLGANFRWAL
                     KEMDATPEETVMIGDQIMTDIFGGNRQKLTTIFVRPVKQTDGMATKLNRMMESVILKR
                     LAKKNQIKWEESL"
     gene            6942..8042
                     /gene="yqeH"
                     /locus_tag="IBJ56_001426"
     CDS             6942..8042
                     /gene="yqeH"
                     /locus_tag="IBJ56_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HAM3417683.1"
                     /translation="MTEEIRCIGCGAVIQTEDPDKIGYAPKSSLNNEQVICKRCFRLK
                     HYNEIQDVALTDDDFLRILNQISSKQALIVYVVDIFDFDGSWLPGLPRFAGSNPVLLV
                     GNKEDVLPKSLKRDKLTRWMRTRAKEQGLAATDVVLVSAEKGHGFDTLLEKIEELRNG
                     QDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLVDTP
                     GIINHHQMAHFIDTTTLKAITPKKEVKPAVFQLNEEQTLFLGALARLDYVSGGRKSLV
                     VYVSNNLPIHRTKLEKADALYEKQAGIVLQPPTEEGMETLPKLVPYSFTIKEKADIVF
                     SGLGWVTIPEGGAKVTAWVPEGVSATIRTSLV"
     gene            8062..8883
                     /gene="aroE"
                     /locus_tag="IBJ56_001427"
     CDS             8062..8883
                     /gene="aroE"
                     /locus_tag="IBJ56_001427"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HAM3417684.1"
                     /translation="MEKYVVIGNPIRHSLSPAMQNRIFQELGMNAEYNSVLIEEDAFE
                     TEIKKLMDSGVRGFNITTPFKERILPFLDELEDLAAASGAVNTVLKKEDKWYGFNTDG
                     KGYLEGLEEIRSITEDDSILITGAGGASKAIYLALSTHTDAKITVTNRTTEKAIEMTK
                     DNENHHAVTLEEAEKQLADFTVIIQTTSIGLEASKNKSPISLANVKKGTICSDIIYNP
                     AETAFLKEAKKNGAITQNGLPMFVNQGALAFEIWTGIKPERSLMKEAVLEQLGGN"
     gene            8883..9173
                     /gene="yhbY"
                     /locus_tag="IBJ56_001428"
     CDS             8883..9173
                     /gene="yhbY"
                     /locus_tag="IBJ56_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HAM3417685.1"
                     /translation="MLTATQKRFLRKEAHNIQPIFQVGKGSVSPNLIIHVKEALEARE
                     LIKISILQNCEEDKQTVAEKISARSGAEIVQVIGRTIILYKTSVNKQQIKLP"
     gene            9191..9757
                     /locus_tag="IBJ56_001429"
     CDS             9191..9757
                     /locus_tag="IBJ56_001429"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HAM3417686.1"
                     /translation="MKHKVGILGGTFDPPHLAHLRMAEEAKKQLGLEKILFLPNKIPP
                     HKHISGMASNDERVEMLQLMIEGIDSFEIDTRELMRAGKSYTYDTMRDMISEQPDTDF
                     YFIIGGDMVEYLPKWYHIDDLVKMVTFVGVNRPSYQTEVPYDIVKINMPETTISSTEI
                     RNNIENASTFLPEKVWSYIKEHQLYGKK"
     gene            9744..10319
                     /locus_tag="IBJ56_001430"
     CDS             9744..10319
                     /locus_tag="IBJ56_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HAM3417687.1"
                     /translation="MERNEMLKKVEAAMPNARFKHTLGVEKAAVELAEHYHMDVEKAR
                     ITALLHDYAKYYDDDKARKIIEDEGYDPRLLSFHRSLWHAPVGAYLAEKEFGITDTEI
                     LEAIRLHTTGSATMSDFDKLIYLADYTEQGRTFPGVYKARRLALKSLNEAMLFALSNT
                     ITHLVKKQQLVFPDTLDAYNYFVNLNLEGDY"
     gene            10324..10680
                     /gene="rsfS"
                     /locus_tag="IBJ56_001431"
     CDS             10324..10680
                     /gene="rsfS"
                     /locus_tag="IBJ56_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HAM3417688.1"
                     /translation="MNSYDTLMLTAKAADDKRAEDILALDMKGLSSFADYFVICHGNS
                     DKQVQAIAREIKEKALENQVDVKRLEGFDAAKWILIDLGDVIIHVFHKEERSYYNLEK
                     LWGDAPLVDVSAAFIS"
     gene            10736..11467
                     /locus_tag="IBJ56_001432"
     CDS             10736..11467
                     /locus_tag="IBJ56_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAM3417689.1"
                     /translation="MSYEYFPGFYDRLMDSELYDEWLEFTAHFIGDTPKKILDLACGT
                     AEFALRLSFSGHQVTGVDLSKEMVAVAKEKVAAAEINLPIIEQDMSKLALKQTFDVVT
                     CFCDSLNYLETEQALEATIQAVSVHLEPNGLFLFDVHSVFKVDQGFKDYSYGDSDEEI
                     STIWNSFPGEHPHSVEHELTFYILDEDDTYNRVDELHKERTYPIATYENILKKYGFTK
                     IDIYADFSHEKPNNTSERIFFAARK"
     gene            11570..12172
                     /locus_tag="IBJ56_001433"
     CDS             11570..12172
                     /locus_tag="IBJ56_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HAM3417690.1"
                     /translation="MMDLVKKHKNYILIGIAILCAGLVYIWIPDSKSDAVTANQAVTK
                     EEKPKKEETKLSNEVYIDIKGAVRTPGVYKLPMDARVQDVVKIAGGLTAEADCSKLNL
                     AEKLKDEMSIYVYKKGEEGPATQGANTEEASTGSAKINLNSATKDDLQQVPGIGESKA
                     TAIIEYREKEGLFQTIEDLKNVSGIGEKTVEKLKEYLDVN"
     gene            12244..12804
                     /locus_tag="IBJ56_001434"
     CDS             12244..12804
                     /locus_tag="IBJ56_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComE operon protein 2"
                     /protein_id="HAM3417691.1"
                     /translation="MQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYN
                     GSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACT
                     KSIIQAGIKKVYFAKDYKNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLV
                     KEAAVEVNIEPEKAEQLYQNISEKLN"
BASE COUNT         4476 a         2229 c         2573 g         3667 t
ORIGIN      
        1 caaaagatga agcaagtaaa gagaaaatca ccgtagaaat cccagcaggc tctagtattt
       61 cagacatttc tactattcta gaagataaaa aagtaattaa taatgcttct attttctcgt
      121 tttatgtaaa atataataat gatacgaatt taaaagcagg gaactatgaa ttcagtccgt
      181 cgatgaacac agatcaaatc gtcaaaaaaa tgcaagaagg aaaaacagta gcacctgcca
      241 aactggtcat tccagaaggt tacacgttag accaaattgc tgatagaatt gttgcttatc
      301 aaccaaaact aaaaaaagca gatgtactta aaacaatgga cgatcctgaa tttgttgcct
      361 ccatgattaa agcatatcca gatacagtaa caaacgacgt attaaacaaa tctattaaac
      421 atccattaga aggttattta tatccagcta cttacacctt caaaggaacg gatgtatctg
      481 cagaacaaat tattacagag atggtcaagg caacggatgt gaacattgct aagtaccgcg
      541 atgaactaac gaaacaaaaa atgtctgtac acaaattctt aacgatgtct tccattatcg
      601 aaaaagaagc aactgaaaac gtagatcgca aaatgattgc cagcgtattt tataatcgtt
      661 tagcaaaaga tatgcgattg cagacagacc caactgttct ttatgcgctt ggtgaacaca
      721 aaagtaaaac gacttacaaa gatttagaag tcgattcacc atacaacaca tacaaaaaca
      781 atggactacc accaggtcca atttcaaata gtggagactc ttcgatggaa gcagcacttt
      841 atccagaaaa aagtgattac ctatacttct tagcaaatac aaaaactggt aaagtatact
      901 tctctaaaac tttagaagag cacaataaac taaaagaaga gcatattacg aaaaataatt
      961 aaaacaacca cttgtcagaa gcatgtttag catgtttttg gcaggtgctt tgtttgttaa
     1021 gataggggat cctagcagtg aatgatatta ttcatgatta tttattaaaa aacattccta
     1081 agagcagtcc tttttttgaa gaattagagg cgtatgcgaa ggaaaatgaa gtaccgatta
     1141 tggaaccaga ttctttgtac tgcttattac agattttaga tatccaaaaa ccaaagcgca
     1201 tattggagct tgggacggcc attgggtact ccgctttaaa aatggcagat aaacttcctg
     1261 atgcagagat tatcacggtt gagcgcgacg aagaacgata tgagcaagca atacataata
     1321 ttcagcgcta cggggctaat gacagagtga aagttttatt aacagatgct attgaaggag
     1381 ctgaagaaat tttggctcac ggtccatttg acgcaatatt tattgatgca gccaaagcgc
     1441 aatatgagaa atttttccat atttataccg attctttagc tgaaaatggc gttatttata
     1501 gtgataatgt tctttttaaa gggttagcgc tagatatgac accagaaaaa caacgcaaat
     1561 tacgtgttgc taggaaaatg cgccatttta acgatttttt agtgacgcat cctgattttg
     1621 aaacaacgac cattccacta ggggacggcc tatctatttc taaaagaaag aaaactggag
     1681 gcgtatcatg acaaaaaaac caatcgtagt cggcgtaact ggcggttcag gttctggtaa
     1741 aactagtgta acgaaagcca tttgtgatca ttttagcgga cactcgattt tgatgattgc
     1801 tcaagatgtc tattatcacg atcaagccaa tattagtttt gaagatagat taaaagtaaa
     1861 ttatgatcat ccactagctt ttgatacgga cttactcatt tcacatattg ccgcactgcg
     1921 tcgctatgaa accatagaaa agccaattta tgattatgcc aaatatacgc gaaaaaaaga
     1981 agtagaaatc caagaaccta gagaggttat tattttagaa ggaattttaa ttttagaaga
     2041 taaacgcctt agggatttga tggatattaa agtatatgtg gataccgatg atgatattcg
     2101 ttttattcgc agacttttac gcgatatgaa agaacgtggt cggacaatgg attctgttat
     2161 cgagcaatat ctttctgttg ttaaaccaat gcacaatgaa tttatagaac caacgaaaaa
     2221 atttgccgat attattattc cagaaggcgg agagaatcac gttgcaatcg acttaatgac
     2281 aacaaaaatt gaatccattt tgcaaaaaca tgtataaaca acaggtatca cttgtcaaat
     2341 agagaaattt aaggtaaaat ttttctagta aaaagagtgg caattgcttg ctatttctag
     2401 cgtggcgtgt taatctttct gacgagtagt aatatttttg atgaaggtgc ggagcgatat
     2461 ctccgtgctt ttctatacaa taatgaacaa acaaaaagga gcgaaatcga ttggcgacag
     2521 aaaaagtatt tccaatgacc ctagatggga aagcaaaatt agaaaatgaa ttacaagaat
     2581 taaagacggt aaaacgtaaa gaagtagtag aacggatcaa aattgcccgt agttttggtg
     2641 acttatcaga gaactccgag tatgattccg caaaagacga acaagctttt gttgaaggtc
     2701 gtatcactac tattgaaaat atgattcgta acgcacaaat cattgatgct gctgaagcac
     2761 ataatggttt agtaacactt ggaaatacag ttactttcat tgaactacca gacggtgaag
     2821 aagaaactta cacaatcgta ggtagcgctg aagcagaccc gtttgaaggt aaaatttcca
     2881 atgattctcc aattgccaaa ggtttacttg gtcataaaga aggggaagaa gtaactatcc
     2941 aaacaccagc tggtgacatg agcgttaaaa tcgaaaaaat cactgcatct taatattatc
     3001 ggatgttttt atacagcggt tacttataag gtggtgaatg caaatggcag acaaacgaca
     3061 atcaaataac cgtcgaatta aacaaaactt ggtggaagga tctcgctccc agcaaaatac
     3121 aaaacgaaaa aagactaatt tagttttaaa cgttttaatt atcgtggtaa gcttacttat
     3181 cattggtagt ttgtattttg tgctgtttaa aacagagagt gatcctacgc aacaagataa
     3241 caaaacggca tcttccactg caaaaaaaga agatgccgct aaatcatccg aaaagaaaaa
     3301 agattcttca gatgataaaa caactgaaac aaccgaaagc gatgatccca atgtagcgaa
     3361 agttattacc aaagattgga aacctattgg taccgaacaa actggtgatc atgtgaattc
     3421 gtacagttcc acaagtatag attggcaaga aaaacgtaaa gctttttctg cagcaactga
     3481 tatcccaatc tcaaatacgt cgctttggtt tgtagagcaa ggagctgatc ctgcgacaca
     3541 agcaattggt acactctcta ctaaagaaaa cccagacaaa gcatatcgtg tttatattac
     3601 ctgggttgac ggtgaaggat ggcaaccaac caaagtggaa gagcttaaaa caaatgacaa
     3661 aagataaaag cacagaagtt agctgttaac gactgtgctt ttttggaggt tacataatga
     3721 caattggtat tattggagca atggaagaag aagtagaact tttaaaaaat agcatgccaa
     3781 gcgtagaaga aattgttatt ggcggagcta aattttacgt tggcgaaatt gctggcaaag
     3841 aagtagtgct tttggagtca ggtattggta aagtaaatgc cgcacttgga acaacactta
     3901 tggcggaccg gtttaaacca gaagtaatta ttaacactgg ttctgctggt ggtatggcgg
     3961 aaggattagc cgttggtgat gttattattt ctgaccgatt agcttatggc gacgtagatg
     4021 taacggaatt tggttatact tacggtcaag tcccaagaat gccagctttt tatcaaggag
     4081 acgctgtact tcttaaaaaa gcggaaacca tttaccgtga atattttgct gcaagcgaaa
     4141 acaaagcagt ctatggactt gttgttacga atgattcatt tattatgcgt ccagatcagc
     4201 acgaaacaat tcgcactttt ttcccagatg taaaagcagt tgagatggaa gctgcggcaa
     4261 tcgcacaagt tgcttatcaa tttgatattc ctttcttaat tattcgcgct atttcagatt
     4321 tagcgaatca agaagcgact atttcatttg atgaattcat tcacttagca gcgaaacaat
     4381 ccgcaacatg tatcatcgaa ttactaaaaa caatttaaaa aatgcctgga gtttttaagc
     4441 tccaggcatt tttttatttg atatattctt ctgttaaagt aaggaaatct tctacatctt
     4501 tggcagcaag agcaacagct tcttcccaga agtcagcttt acgtaagtca acgcccagat
     4561 gtttttctgc tagctgttct gttgtcatcg aaccagtgtc ttgtagtagt gcaatgtatt
     4621 tatcttcgta actagcacct tctgcttgag ctttatggta aatgccaagc gagaacaaat
     4681 aaccgaaagt gtacgggaag ttataaaacg gtacatcagc aatgtagaaa tgtagtttag
     4741 aagcccagaa ttgtggatga tattcatcca aggcgtccaa gtatgcttct cgttgcgctt
     4801 cttccattag agcgttaagt cgatcaaccg aaacgacacc ttgtttacgt gcttcataga
     4861 agttacattc aaaaataaag cgagcatgaa tattcataaa gaaggcgata ctacgaccga
     4921 ttttatcttc caacaacgtg attttttctt cttttgtttt tgcatctttc acagaagcat
     4981 ctgcaataat catttctgca aaagttgaag cggtttctgc cacgttcatc gcataatcag
     5041 tattttcaaa gggttcatcg cgaatcacgt gtgaatggaa tgcgtgccca agttcgtgag
     5101 caagagtagc gactgttcct ggagcgccat catatgtcat gaaaatgcga ctttcttttt
     5161 cgacagggaa gtcggtacaa aaaccaccag gacgtttatt atcacggtct tccgcttcaa
     5221 tccaaccttt ttcaaacgct gattgcgcaa agtttgccat tttcgggctg aatttgttaa
     5281 attgctcaat aataaattca gcgccttctt gatacgaata tttcttaggt tcgcttgaaa
     5341 agacaagagg agcttctaca tcataaaaac ttaatttttc aaggccaagt aatttcgctt
     5401 ttctatctaa gaatcgaaca aaagtaggct tgttcgtttg gatgacattc cacatagatt
     5461 ttaacgtttg ctcatctaaa cgattaattg caagaggttc atctagaata ttatcccatt
     5521 tacgaatttc atatgtagct aaacggaatc ctgataaatg atttaacgta tcgctaaata
     5581 aacgagcttc actttgccat acacgtgtat attctttaaa aactgcttgg cgaaccgcgc
     5641 gatcagggtg atttaataag tttagcgctt ggccagcaga aatatctttt tcttctccgt
     5701 taatggtaac atgcatgcgg agtttaccga caatggtatc ataatgatca gaccagccgc
     5761 gataaccatc gacagctaaa gaattaatag ctgcttcttg ttctttactc ccttttttac
     5821 ggcggttcgt acgcgcttca cttaaaataa agctaatttg cgataaacca ttttgttcca
     5881 ttaattcgtc ccaaacacgg tcagaaactt gtgcaaattt gtcatgccat tcatcttcgg
     5941 ccgtagctag agttgcaacg tattgataaa ttaacgccga aagctcattt gcacgcgagt
     6001 cattgatatc agcggaagca agacattcta aaaatgatcc agctgtgagt aaaattttag
     6061 atatatctgc attttgatta acgagaagta aaaattcagc agaggcttcc acattttcag
     6121 gaacatccca ctccgaaaca tttacaacaa agctgtctaa atcagctttt acctcttgaa
     6181 gcgtttgttg taattcttca gagccgctgc cgccagcata tatattttct aaatcccatg
     6241 ttaatgcata atcttttgac atttgtttac ctccttaaaa ataacgtttc ctttcatatt
     6301 atagcatttt tctaaggttt ttttgtaaaa taagcagaaa gatggtaaaa tttatagatt
     6361 attagtctaa ttgaatgtat tatagaatag actgtactaa ataaaagaat gaggtgccaa
     6421 tacgtgttaa agcaattctc accagataaa atgttgaata ctccatttgg aattacagca
     6481 gcacaacttc gcaaaatggg aaagactact attttgactg atcttgataa tacgctgctt
     6541 gcatgggatc aactagacgc aacggatgaa gttatcaact ggtttactat attgaaagaa
     6601 gaaggaatca aagtaatgat tttttctaac aataacgaag aacgagttgc tcgtgtggca
     6661 aaagcaatcg atgttcctta tttagcccgg gcaaaaaaac ccttaggcgc taatttccgc
     6721 tgggcattaa aagaaatgga tgcaacacca gaagaaactg tgatgattgg cgatcaaatt
     6781 atgacagata tattcggtgg aaaccgtcaa aaattaacaa ctatttttgt tcgccctgta
     6841 aaacaaacag atggtatggc gacaaaatta aatcgaatga tggaaagcgt tattttaaaa
     6901 cgattagcaa agaaaaacca aattaagtgg gaggaatcac tttgacagaa gaaattagat
     6961 gtattggttg tggcgcggtt attcaaacag aagaccctga taaaatcggc tatgctccaa
     7021 aatcatccct gaacaatgag caagttattt gtaaaagatg ttttcgtcta aaacattaca
     7081 atgaaattca agatgttgcc ctaacagacg atgatttttt acgtatttta aatcaaatta
     7141 gttcgaaaca agctttaatt gtttatgtag tagatatttt tgatttcgat ggtagttggt
     7201 tacctggact tcctcgtttt gcaggaagta atccggtatt acttgtcggg aacaaagaag
     7261 atgtattacc aaaatcatta aaacgtgata agttgacacg ttggatgaga actcgtgcca
     7321 aagagcaagg cttggcggcg acagatgtcg tattagttag cgctgagaaa ggccacggtt
     7381 ttgatactct tttagagaaa attgaagaat tgcgaaatgg acaagatgtc tatgttgtcg
     7441 gttgtacaaa cgttggtaaa tcaacgctaa tcaatcgtat tattaaacaa gcatccgggg
     7501 aaaacaatgt cattacaacc tctcaattcc caggaacaac gcttgataaa atcgaaatcc
     7561 cattagcaga tggcaatgta cttgttgaca caccaggaat tattaaccat caccaaatgg
     7621 cacatttcat tgatacaaca acgttaaaag ctattacacc taaaaaagaa gtaaaaccag
     7681 ctgtcttcca attaaacgaa gaacaaaccc tatttttagg ggcgcttgct cgcttagatt
     7741 atgtttcagg tggtcgcaaa tcattagtag tctatgtatc taataatcta ccaattcacc
     7801 ggacaaaatt agaaaaagcg gatgcgttat acgaaaaaca agcaggaata gtgcttcaac
     7861 cgcctacaga agaagggatg gagacacttc ctaagctagt tccgtattct tttacaataa
     7921 aagaaaaagc ggatattgtc ttttccggac tcggctgggt gacaattcca gaaggcggcg
     7981 cgaaagttac tgcgtgggtt cctgaaggcg tgagcgcaac tatccggaca tcactcgttt
     8041 aaaacgaagg aggcctatca tttggaaaaa tatgttgtta tcggaaatcc tattcgtcac
     8101 tcgttatcac cagctatgca aaatcggatt ttccaagaac ttggaatgaa tgcggagtat
     8161 aactctgttt taatagaaga agacgctttt gaaacagaaa tcaaaaaatt aatggattct
     8221 ggagtgcgtg gatttaatat tacaacacca tttaaagagc gtattttacc atttttagat
     8281 gaattagagg atcttgcagc agcttctggc gcagtgaata ctgtgctaaa aaaagaggac
     8341 aaatggtacg gatttaatac agatggcaaa ggctacttag aaggattaga agaaatccgc
     8401 tcaattacag aagatgattc tattttaatt accggtgcgg gtggcgcaag caaggcaatt
     8461 tacctagcgc tttccactca cacggatgct aaaataaccg ttactaatcg tacaacggaa
     8521 aaagcgatag aaatgacgaa agataatgaa aatcatcacg ccgtcacact agaagaagca
     8581 gaaaaacaac tggctgattt tacggttatc attcaaacaa catctatcgg tttagaagct
     8641 tccaaaaaca aaagcccaat ttcgctggct aatgtaaaaa aaggaacgat ttgttctgat
     8701 attatttata atccagccga aacagccttt ttgaaagaag caaagaaaaa tggagctatt
     8761 acccaaaatg gcttaccgat gtttgttaat caaggggcac ttgcctttga aatatggact
     8821 gggataaaac cagagcgatc actgatgaaa gaagcagtac tcgaacaatt aggaggaaac
     8881 taatgttaac agctacacaa aaacgttttt taagaaaaga agcgcataat atccaaccca
     8941 ttttccaagt aggaaaagga agcgtatcac caaacttaat tatccacgta aaagaagcac
     9001 tagaagcgag agaattaatt aaaatctcga ttctacaaaa ttgcgaagaa gataaacaaa
     9061 ccgttgcaga aaaaattagt gctcgttcag gcgcggaaat cgttcaagtc attggcagaa
     9121 cgattattct gtacaaaact tctgtaaaca agcaacaaat taagttgcca taaatcggga
     9181 ggaacctacg atgaaacata aagtcggcat cttaggtggg acttttgatc cgccgcattt
     9241 agcgcacctc cgcatggcag aagaggctaa gaagcaacta ggacttgaga aaattctttt
     9301 tttacctaat aaaattccgc ctcataaaca tatcagtggt atggcttcaa atgatgagcg
     9361 tgtagaaatg cttcaattaa tgatagaagg tatagattcc tttgaaattg atacacgtga
     9421 actcatgcgc gcgggaaagt cctatacgta tgacacaatg cgtgatatga taagcgaaca
     9481 gccggataca gatttttatt tcattatcgg cggggacatg gtagaatatt tgccaaagtg
     9541 gtatcatata gatgacttag taaaaatggt gacattcgtt ggggttaatc gccccagtta
     9601 tcagacggag gttccgtatg atatcgttaa aatcaatatg ccagaaacga cgatttcttc
     9661 tacggaaatt agaaataata ttgagaacgc gagcaccttt ttaccagaaa aagtatggtc
     9721 atatataaag gagcatcaac tttatggaaa gaaatgaaat gctaaaaaaa gtagaagcag
     9781 ctatgcctaa tgctcgattt aaacacactt taggcgtaga aaaagcagct gtagaacttg
     9841 cagaacatta tcatatggat gtagaaaaag cacgaataac cgctttgcta catgattatg
     9901 ctaagtacta tgacgatgat aaagcgagaa aaattatcga ggacgagggt tatgatccgc
     9961 gtttactttc ttttcatcgt tcgctgtggc acgctcctgt tggcgcctat ctggcagaaa
    10021 aagaatttgg tattactgat acagaaatac tagaagcgat tcgtctgcat acgacaggaa
    10081 gcgcgacgat gtctgatttc gataaactta tctacttagc tgactataca gaacaaggaa
    10141 gaacatttcc cggcgtatat aaagcacgca gattagcact taaatcgctt aacgaagcaa
    10201 tgttattcgc tttatcgaat acgattacgc acttagtcaa aaagcaacaa ttggtttttc
    10261 cagatacact ggatgcctac aattatttcg ttaatttaaa tttggaagga gactattaat
    10321 aatttgaaca gttatgatac attaatgctg actgctaagg cagcagacga taaaagagca
    10381 gaggatattt tagcactaga catgaagggg ttatcaagct ttgcggatta ctttgttatc
    10441 tgtcacggta attcagacaa acaagtgcaa gcaatcgctc gtgaaattaa agaaaaagcg
    10501 ttagaaaacc aagtagatgt gaagcgttta gaaggttttg atgcggcaaa gtggatttta
    10561 atcgacttag gtgatgttat tatccatgtg ttccataaag aagaacgttc ttactataac
    10621 ttagaaaaac tttggggaga tgcgccactc gtggacgttt ctgctgcgtt tatttcttaa
    10681 taaaaaacag aacaggcgag ggaattctcg tctgtttttt taaggagaaa ttactatgag
    10741 ttacgaatat tttccgggtt tctatgatag attaatggat tccgaacttt atgatgaatg
    10801 gctagaattc acggctcatt tcattggaga tactcctaaa aaaatacttg atttggcttg
    10861 tggaacagct gaatttgcgc tacgtttaag tttttctggt catcaagtta ctggtgtgga
    10921 tttatcaaaa gaaatggtgg cagttgctaa agaaaaagtg gcagcggctg aaatcaattt
    10981 gccgattata gaacaagata tgtccaagtt agcattaaag caaacgtttg atgtagttac
    11041 atgcttctgt gattcactta attatttgga aacagaacaa gctcttgagg ctactattca
    11101 agctgtatca gtgcatttag aaccaaatgg cttattttta tttgacgtac attccgtctt
    11161 taaagtagat caagggttta aagattattc atacggagat agcgatgaag agatttcgac
    11221 gatttggaat tcatttcctg gcgaacatcc gcattctgtc gaacatgaac ttaccttcta
    11281 tattttagat gaagatgaca cgtataatcg cgtggacgaa ctgcataaag aacgcaccta
    11341 tccaatcgct acttatgaaa atatattaaa aaaatatggt tttacgaaaa ttgatattta
    11401 tgccgatttt agtcatgaaa aacccaataa tacgagcgaa agaatctttt tcgcagcaag
    11461 aaagtaattt ttcattatta ctttcttttt ttgtgcgatt ttcaccttaa actatcaaaa
    11521 aggaatttgt cctagcatgg cgaatagtat attaaggacg gtgatatgga tgatggactt
    11581 agtaaaaaaa cacaaaaatt atatcttaat agggattgct attctttgtg ctggtttagt
    11641 ttatatttgg ataccagata gtaaatctga tgctgtaact gccaatcaag cagtaacgaa
    11701 agaagaaaaa ccgaagaaag aagaaacaaa attatcaaat gaagtttata ttgacattaa
    11761 aggagcagta aggacccctg gtgtctataa actgccaatg gacgctagag ttcaagatgt
    11821 ggtgaaaatt gcaggagggc tcacagctga agccgattgc agtaaattga atttagctga
    11881 aaaactaaaa gacgagatga gtatctacgt ttataaaaag ggagaagaag gtcccgcaac
    11941 acaaggagct aacacagaag aagcaagtac cggttctgcg aaaattaacc ttaacagtgc
    12001 aacgaaggac gatttacaac aagtcccagg gattggagaa tcgaaggcaa cagcgataat
    12061 agagtaccga gaaaaagaag gcttattcca aacaatagaa gatttaaaaa atgtttcagg
    12121 catcggcgaa aaaacagtag agaaattaaa agaatatttg gatgttaatt aataaaagtg
    12181 gttgacgaac ttccttctaa acacctatac taatatttat caaatcataa gggagttttt
    12241 aatgtgcaga gaatcgcatg ggatcagttt tttatggcgc aaagtcatct aatatcatct
    12301 aggagcacgt gtacacgact aatggtcggt gcgacaatag ttcgagataa acgtattatt
    12361 gcgggcggat ataatgggtc catcgctggt ggcgatcatt gtgcagaaca cggctgttat
    12421 gttgtagacg gtcactgcat tcgaacaata catgcagaga tgaacgcgat tttacaatgt
    12481 gctaaatttg gtgcaacgac agataaagct gaattatatg taacgcattt cccttgtctt
    12541 gcttgtacga aatctattat tcaagcaggt ataaagaaag tgtatttcgc taaagactac
    12601 aaaaaccatc cgtacgcttt agaattattt aacattgctg gcgtcgaatt acaaaaagta
    12661 gaatttgatg aatctgttct tcaagtaaac aattggaatg gagaaaaaat gcatacttta
    12721 gtaaaagaag ctgcagtgga agtaaatatc gaaccagaaa aagcagagca actttatcaa
    12781 aacatctcag agaaattgaa ctaaataggg aggggacgtt atcgagcgat atttagctat
    12841 tattgtttta gctattgttt gtgcgaattt tacaagctct atcgttccca tatgtatttg
    12901 tttgctaggt ttaattgctt ttattaaaaa atccaaaatt attct
//
LOCUS       DABQVC010000073        12758 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.073,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000073 DABQVC010000000
VERSION     DABQVC010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12758
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.073"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..258)
                     /locus_tag="IBJ56_001435"
     CDS             complement(<1..258)
                     /locus_tag="IBJ56_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3417692.1"
                     /translation="MTKVLTFENISYWYKTKEESILSDINYDFEAGVFYTVVGSSGSG
                     KTTFLSLAGGLDTQKEGDIFYKGSSLKSIGLQQFRNKYVSIV"
     gene            complement(267..1766)
                     /locus_tag="IBJ56_001436"
     CDS             complement(267..1766)
                     /locus_tag="IBJ56_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3417693.1"
                     /translation="MNFFKRAWLSMKARKGRSVLQLIIFTVVCVLILSGFTIQSAADK
                     ASELAREQLGGTVTLTVDREKQMQTMRDEASSSDSSSTESKPQFQSSPIDVSDANDLA
                     KLNHVASYNYYSSTQALASGFDPIESSGDTSSSSDESSTTTETQGPGGGQGGPQMVDA
                     DLSISGLLDSATSTDFEAGTSELTSGVAITSADKDKNVAMVEENLAEENDWKVGDSFT
                     VTSSDGNTKVTLKIVGIYKTTDSGSDLAQNFSFLNPYNKVYVPYTVANTIKGSDYKNT
                     VDSAVYTMDDAANISAFEKEAKKVDSIDWDTFKLDANDTLYQQMIGPINSVASFSKNV
                     VYIVSIAGALILGLLVMMQVRDRKYEMGVLLAIGEKRGKLIAQFFVEILIVALVSFGL
                     AAASSHYVAQLAGNQLLAQQNSSTTETTSSTENRGPGGGQGGPGGFGESVSNLTKNTE
                     QIKELDIQVTLEDMLKMGGIGIGIAFISVLLPAALVLRMNPKTILTKQE"
     gene            1933..2619
                     /locus_tag="IBJ56_001437"
     CDS             1933..2619
                     /locus_tag="IBJ56_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3417694.1"
                     /translation="MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDE
                     YDIAIIDLMLPNMDGMTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPF
                     SPLTLMARIKAVTRRKNSATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEF
                     DLLYFLMQHPRQVFSREQLLEQVWGYQFYGDERTVDVHIKRLRQKIATETKPFLHTVW
                     GVGYKFDETE"
     gene            2616..4055
                     /locus_tag="IBJ56_001438"
     CDS             2616..4055
                     /locus_tag="IBJ56_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HAM3417695.1"
                     /translation="MKRMKFKYAYQLFFTQFIILLIACIMIGVLVSHSLKDYFYQSQV
                     DDLTSYGQTISRDIRYSPQDATMQVLNTYQRILDVKKIHYTIKNANDETIYPTQMNQP
                     LPKDFSISSDDKKKLESGETVSKKIDNRFNKEMTIVYVPIMNGDKFVGSIVLNSPISG
                     TEQVIGTINRYMFYTILLSITVALILSAILSKLQVNRINKLRAATKDVIQGNYKARLK
                     ENNFDEIGALAIDFNKMTQTLETSQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTE
                     GLVNDIIPKSETDRCIALIDTEARRLTKLVNENLDYEKIRSNKIKLQKTRFNGKEFLE
                     LIKEQLDYVSSEKGNTITVSIDKDMAIYADYDRLTQVFINIVKNSVQFTENGQITLTG
                     TQDYKESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEY
                     HDGSITVTSEPNKGTSFTIRLPFFQDNEQ"
     gene            complement(4097..6493)
                     /locus_tag="IBJ56_001439"
     CDS             complement(4097..6493)
                     /locus_tag="IBJ56_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HAM3417696.1"
                     /translation="MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKE
                     TNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKFGQQFKADRFRKEMPQSRAGLI
                     NYLSGELFKGIGKVTAENIVDKIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
                     NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADEL
                     GRKLGLGGNHPERLRAGILFMLDSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQN
                     ILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQTEYQEQFPQSEFLL
                     ALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVS
                     LDPHAYKDGATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLI
                     DGRLLIVDEMSMVDIWLANQLFRALPAHMQVVLVGDQDQLPSVGPGQVLKDILQSEQI
                     PTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGDVVEQVV
                     KNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGDIKYRVH
                     DKVLQLINQPEKNVFNGDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLT
                     HAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTGVTRSKQFLILCGEEEAFRMG
                     IERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG
                     "
     gene            complement(6521..7159)
                     /locus_tag="IBJ56_001440"
     CDS             complement(6521..7159)
                     /locus_tag="IBJ56_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAM3417697.1"
                     /translation="MQEGNLEEAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAE
                     LFFKRALELDDTVPAAYYSLGNLYYELERYQEAADSFQNATKQGMENGDLFFMLGMSF
                     VQMEELTLAMPYLLRSVELNPEDGEALFQYGIVLARSGFYEDAINMLERVLLVKPEDP
                     DALYNIGAAYLAWQGDIVLAKNYFERAIATGASHELAENALNAIQDLENEVE"
     gene            complement(7200..7940)
                     /locus_tag="IBJ56_001441"
     CDS             complement(7200..7940)
                     /locus_tag="IBJ56_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3417698.1"
                     /translation="MKKIAIFGSAIVLFCLLIWGYFYFNSEPSTTAENAANSTKAVDV
                     LEENDILVFTPRKLDADMSVILYPGAFVDALSYAPLANKLASSGYKTYIVEMPLNLAV
                     FGKNRAADIIDEAPDEKFVIGGHSLGGVMSSRFAHDNESEIEGAFFLASYPDKKGSLK
                     NASFPALSITATKDEVLNQDSYNKNKKYLPKDTTFVSIKGGNHAQFGSYGEQHGDGKA
                     TISGPEQTDQVANALITWLNTSVKNQER"
     gene            complement(8059..9174)
                     /gene="mnmA"
                     /locus_tag="IBJ56_001442"
     CDS             complement(8059..9174)
                     /gene="mnmA"
                     /locus_tag="IBJ56_001442"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HAM3417699.1"
                     /translation="MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD
                     TDEFGVCTATEDYDDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDV
                     MCNKEIKFKAFLEHAESLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLS
                     QDQLKKVMFPLGGMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQ
                     PGEMRTLNGEVLGKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHH
                     ETLYSDSLIATDISFTTNAEKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPV
                     RAITPGQAVVFYDGDICLGGGTIDTVWKNGAKLDYVG"
     gene            complement(9193..10341)
                     /locus_tag="IBJ56_001443"
     CDS             complement(9193..10341)
                     /locus_tag="IBJ56_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HAM3417700.1"
                     /translation="MENRIYLDHAATSPIHPEVIQTMLGAITNTYGNPSSIHYAGREA
                     RKALDEARHTIADSIHAIEKEIIFTSGGTEGDNLAIIGAALAQQESGKHIITSQIEHH
                     AVLKTCEYLETQGFEVTYLPVDEHGIVSIESLQEALRPDTILVSIMYGNNEIGTIQPI
                     AEIGAVLRNHQAIFHTDAVQAYGLLNINVTELGVDLLTTSSHKINGPRGVGFLYVKNG
                     TRLIYQMHGGEQERKRRAGTENLAGICGFSAASSIMMNERELKNEEYISFKKRMAEIW
                     RSADLDFEVNGLEANTLPHVFSVRFPGVSIEQLLMNLDMDGIAVSSGSACTAGTVDPS
                     HVLVALFGENHPAIQETVRISFGLGNHLEEVEMAATKISEVVTRLMKI"
     gene            complement(10456..10651)
                     /gene="ssrS"
                     /locus_tag="IBJ56_001444"
     ncRNA           complement(10456..10651)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="IBJ56_001444"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(10722..12005)
                     /locus_tag="IBJ56_001445"
     CDS             complement(10722..12005)
                     /locus_tag="IBJ56_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HAM3417701.1"
                     /translation="MAIQPLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMI
                     LYGPPGIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVH
                     RLDKAKQDFLLPLLESGAIILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITM
                     DRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHI
                     TLDVAEECLQKKSLAHDKDGDAHYDVLSAFQKSVRGSDVNAALHYMGRLIEAGDLVSI
                     SRRMLVMAYEDIGLASPQAGAHTLAAIQTAEKVGFPEARIPLANAVIELCLSPKSNSA
                     IMAIDAALADIRQGKSGEVPDHLRDGHYSGAEKLGRAIDYKYPHNYDNAWVEQQYLPD
                     RLKNKLYYAPKFTSKFEQTIAGVYQKINENKAKKE"
     gene            12154..12576
                     /locus_tag="IBJ56_001446"
     CDS             12154..12576
                     /locus_tag="IBJ56_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HAM3417702.1"
                     /translation="MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQ
                     LIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEAAQRE
                     LWTRMRNAVRDVLDQTTLADLLKHSTDAELSDGYMFYI"
BASE COUNT         3786 a         2693 c         2203 g         4076 t
ORIGIN      
        1 aacaattgat acatatttat ttctaaactg ttgcaagcca atacttttga gtgagctacc
       61 tttatagaaa atatctcctt ctttttgcgt atcaagacct cctgcaagag ataagaaagt
      121 tgtttttcct gagccagaac tgccgactac tgtataaaaa acacccgctt caaaatcata
      181 attgatgtca cttaaaatag attcttcttt cgttttatac caataagaaa tattttcaaa
      241 cgttaatact ttggtcatat cgtcacctac tcctgtttag ttagaattgt ttttggattc
      301 atacgaagaa cgagtgcagc tggtaaaagg actgagataa aggcaattcc gataccaatt
      361 ccgcccattt tcagcatatc ttctaatgtt acttgaatgt ctaattcttt gatttgttcg
      421 gtgtttttcg tcaagttgct cacgctctca ccgaatccac ctggacctcc ttgtccacca
      481 cctggaccac ggttttctgt cgaacttgtt gtttcagtag tagatgaatt ttgttgcgcc
      541 aataattgat ttcccgctaa ttgtgctaca tagtgactac ttgcagcggc taggccaaag
      601 gaaaccagag ctacaattaa aatttccaca aagaattgcg caatcaattt gccacgtttt
      661 tcaccaattg ccaaaagtac acccatttca tatttgcggt cgcgcacttg catcataaca
      721 agtagaccta agatgagcgc gcctgcaatg ctgacaatgt agacaacatt tttagagaaa
      781 gatgcgacac tattaatcgg gccaatcatt tgttgataaa gcgtatcatt ggcatctaat
      841 ttaaatgtat cccaatcaat gctatcaact ttttttgctt ctttttcaaa agcagaaata
      901 ttagccgcat catccatcgt ataaacagct gagtctactg tatttttata atcggaaccc
      961 ttaattgtat tagctactgt ataaggaaca tatactttat tataaggatt taggaaagag
     1021 aagttttgtg ccaaatcact tccagaatct gttgttttat aaatacccac aatctttaat
     1081 gttactttgg tattgccatc actggatgtg acagtaaaag aatcgccaac tttccaatca
     1141 ttttcttctg ctaaattttc ttctaccata gctacatttt tatctttatc agcggaagta
     1201 attgccacac cacttgttaa ctcactagtt cctgcttcaa aatcagtgct agttgcagaa
     1261 tcaagtaagc cgctaatgct taaatcggca tctaccattt gcggtccacc ttggccgcct
     1321 cctggtcctt gtgtttcggt tgtagtggat gattcatcac tcgaagatga tgtatcaccg
     1381 gaagactcga ttggatcaaa tccggatgct aaagcttgtg tactggaata ataattgtaa
     1441 cttgctacat gatttaactt tgccaaatca ttagcatcac taacgtctat cggactactt
     1501 tgaaattgcg gcttggattc agttgagcta ctatcactgc ttgaagcctc gtctcgcatt
     1561 gtctgcattt gtttttctcg atcaacagtt agcgtcactg taccaccaag ctgttctcgc
     1621 gccaactcac tcgctttatc tgcagccgat tgaatagtaa aacctgataa aataagtaca
     1681 cagacgactg tgaatataat tagttgtaaa acagatcttc cttttctcgc tttcatgctg
     1741 agccatgctc tcttaaaaaa attcatgtga tttcctccat tcggtttcta ctccactaag
     1801 attactgggg agttatgaag aaagtatgaa caaactatga tgcatatttt aaactttcgc
     1861 gaaaaaaata atttggcttg attattgggt ctaattaggc tagttttaat gtaagaggag
     1921 tgaatacaaa ttatgaaatt acttatgata gaagataatg taagtgtttg tgaaatgata
     1981 gaaatgttct ttatgaaaga agaaattgat gctacgtttg ttcatgacgg caagcagggt
     2041 tatgaagcgt tttttaaaga tgaatatgat attgcaatta ttgacctaat gcttcctaat
     2101 atggacggta tgaccatttg ccgtaaaatt cgtgaagtaa gcgatgtacc aattattatt
     2161 ttaacggcta aagaatcaga atccgatcaa gtgcttggcc ttgaaatggg tgcggatgat
     2221 tatgtaacta aaccatttag cccacttact ttaatggcgc gaattaaagc tgttacacgc
     2281 cgcaaaaata gtgccacttc tacagaaaat aatgaagata tcctagaaac aacttatttc
     2341 aaaattagta aacggacacg agaaattttt tatcaaggtg agctacttga cgcacttacg
     2401 ccaaaagaat tcgatttact ctattttttg atgcaacatc cacgacaagt gttttcaaga
     2461 gaacaattgc tggaacaagt ttggggttat cagttctatg gagatgagcg cacagtggac
     2521 gttcacatca aacgtttacg ccaaaaaatc gccaccgaaa caaagccatt tttgcacacc
     2581 gtctggggtg ttggctacaa atttgatgaa acggaatgaa gcgaatgaaa tttaaatatg
     2641 cttaccaatt atttttcaca caatttatca ttttgcttat tgcttgtatc atgattgggg
     2701 tgcttgtctc tcactcctta aaagattatt tttaccaaag ccaagtagat gacttaacaa
     2761 gttatgggca aacgatttct agggatattc gctattcgcc acaagatgca acgatgcaag
     2821 ttttgaatac gtatcagcga attttagatg tgaaaaaaat tcattataca atcaaaaacg
     2881 ccaacgatga aaccatttat ccaacacaga tgaatcagcc gttaccaaag gatttctcta
     2941 tttcttcgga tgataagaaa aagcttgaaa gtggcgaaac agttagtaag aaaatagata
     3001 atcgctttaa taaagaaatg acaattgtgt acgtcccaat aatgaatggc gacaaatttg
     3061 tcggttctat cgtgctcaat tcacctatta gcggtacgga gcaagtaatt ggtacgatta
     3121 accgctatat gttctacact attttacttt ctataacggt agcacttatt cttagcgcaa
     3181 tcttgtccaa actacaagta aatcgaatca acaaactacg agcagcgaca aaagacgtta
     3241 ttcaaggcaa ttacaaagct cgattgaagg aaaataattt tgatgaaatt ggtgcacttg
     3301 ccattgattt caataaaatg acacaaaccc ttgaaacatc tcaagaagaa atagaacgac
     3361 aagagaagcg gagacgccag tttattgctg atgtttctca tgaaatgcgt accccgctca
     3421 caacgattag tggcctcacg gaaggtttag taaatgatat tattccaaaa agtgaaacag
     3481 atcgttgcat agcactcatt gatacagaag ctagacgttt aacgaaacta gtcaatgaaa
     3541 atttagatta tgaaaaaatc cgcagtaaca aaattaaact tcaaaaaaca cgttttaatg
     3601 gtaaggaatt ccttgagtta atcaaagaac aacttgatta tgtatcaagc gaaaaaggta
     3661 acactattac tgtttctatc gataaagaca tggcgattta cgcagattac gatcgtttaa
     3721 cacaagtatt tatcaatatc gtcaaaaata gtgtccaatt tactgaaaat ggtcagatta
     3781 ctctaactgg cacacaagat tataaagaat ctgttttaac gataacagat actgggattg
     3841 gtatgaatac agaggaatta gaacaaattt gggaaaggtt ttataaagca gatatgtctc
     3901 gaacaaatac cgcttttggc gaatctggta ttggcttatc cattgtgaag cagttaattg
     3961 aatatcacga tggatcaatt acagtgacta gtgaaccaaa taaaggtact tcatttacta
     4021 ttcgccttcc ttttttccaa gataacgaac aataaaaaaa gaaccacttt ctattttttt
     4081 agagagtggt tcttttttat cctgccataa attgttctgg agtaatccct tccattccaa
     4141 tcatcggatc aatttccgta atattttcag ctgtgagaat tcgtttattt gtcatttgtt
     4201 ctaataaaac atcttcgctc attaaacgtt cagagagtgt tgtattacgt ttattttcat
     4261 caattcgttc tatccccatt cgaaaagctt cttcttcccc gcaaagaatg agaaattgtt
     4321 tacttcgcgt tactccggtg tataataaat cgcgccgtaa catccggtag taactgcgga
     4381 caatcggcat aatcacaatc ggaaattcac ttccctgcgc tttatggatc gaacaacaat
     4441 aagcatgggt caattgatta aattcttgcc tatagtaaga aacctctgtt tggtcaaatt
     4501 gaacgacaat cagatcttgt ttttcggtat tttctttggc gtatataata gacacaattt
     4561 caccaatatc accgttaaac acatttttct ctggttgatt aatcaattgc agtactttgt
     4621 catgcacgcg atactttatg tcaccaaatt gaacttcttt acgacgccct gtatcatttg
     4681 gattgaaaat ttcttgtagt tttttattta aaatatcaat gcctgcagga ccacgataca
     4741 ttggtgctaa aacttggatg tcttttgctc gaaatccttt gttttttgca ttttttacca
     4801 cttgttcgac tacatcacca atttgattta ccgtgcaatg aaaaaaggag cgatcggcgc
     4861 tatttttggt gaaatcagct ggcaacatgc cttcttttat ataatgcgcc atttcgataa
     4921 tggaagaacc atccttttgg cggtaaatat ctgaaagagc tacagttgga atttgttcag
     4981 attgcagaat atctttgagt acttgaccag gtccgactga aggcaactga tcttggtcgc
     5041 caacaagtac cacttgcatg tgcgctggta aagcacggaa taattgatta gcaagccaaa
     5101 tatctaccat tgacatctca tccactatca acagtcgtcc atcaatcagt ctttctgcat
     5161 catcatccat ttgttcttga ccattcattc caagtaaacg gtgaatggtc atcgcaggaa
     5221 gccctgttga ctcagacatc cgtttagcgg cacggccagt tggagcagca agaagaacgg
     5281 ggaaagtcgc tccatctttg taagcatggg gatcaaggct cacaccattt agttccgcat
     5341 aaagctccac tatcccttta atgactgttg ttttccctgt cccgggacca ccagtaagta
     5401 cgagcatcgg agacattaaa gcttgttcta aagcctgtcg ctgcgaatct ccgtagtgaa
     5461 cgccaatccg ttcttctaat tctcctagag ctagcagaaa ttcggattgc ggaaattgtt
     5521 cttggtattc tgtttgttta agcattcgct tcacgtgata tgcaaagccg ctctctgaat
     5581 aatagagtga tggcatgtaa acacgtgtat tttccgtaat aatcttttgt tcctcagcta
     5641 atttttctac ttgagccact aaaatatttt ggtcaatacg aatgccttcg ctttcttcca
     5701 gtaaataagt tacttctccg agcagaacct cttgctccat atatacatga ccttgttgca
     5761 tacaaaccga atctaacata aataaaatcc cagcacgaag ccgttctgga tgattcccgc
     5821 caagaccgag tttccgtcca agctcatcgg cacgctgaaa acctatccct tttacgtcct
     5881 caatcaattt ataaggatta ttctctaaca cttcaatcgc attttgttta taggcctgga
     5941 aaattttcat ggataattgc gggccaaagc catattcgtt taaaccgacc atcacatgct
     6001 ccaacccttg attttctcta agggaagcaa gcaaactttc tgccgcgcca gatggcaact
     6061 taggtactgt atttagcaag ctcggatcgg ataaaatttt tgtgatagca tcgtcgccaa
     6121 tcttatccac aatattttca gcagtgactt taccaatgcc tttaaaaagt tcaccggata
     6181 gataattaat taagcccgct cgtgattgtg gcatttcctt acgaaatcgg tctgctttaa
     6241 actgttgacc aaatttagca tgttcctgca ttttcccgta gaaagtgtat acttcttgct
     6301 cgtgaagcgc tgggaaaaaa ccggttacga taatatcttt ttcgtcccaa tccgcattgg
     6361 tttctttgac caatattcgt acaacagaaa agaggttttc ggcattgtaa aaaatggtgg
     6421 acaacatcgt gcccttcatg aaaagttctt ctggtgtatc gttaaataga gcgagtgatt
     6481 cttgttcagc catcctaagc cgcctccttt ctaattcgtt ttactctact tcgttctcta
     6541 aatcttgaat tgcatttaag gcgttttcag ccaattcatg tgaagcacct gtagcaatcg
     6601 ctcgttcaaa atagttttta gcaagaacga tatctccttg ccacgccaga taagctgcac
     6661 caatattgta aagtgcatct ggatcttcag gcttaacaag taaaacgcgt tctaacatat
     6721 taatcgcatc ttcataaaaa ccactgcgag caagcacaat cccatattgg aataacgctt
     6781 cgccgtcttc tgggtttaat tcgacacttc taagtaaata tggcatcgca agtgttagct
     6841 cctccatttg aacaaaactc attcctaaca tgaaaaataa atcgccgttt tccattcctt
     6901 gttttgtggc attttggaag ctatctgccg cttcttgata acgctctaat tcataatata
     6961 aatttcctaa gctatagtaa gcagctggaa ctgtgtcatc tagctctagt gctcttttga
     7021 aaaataattc cgcacgttca aaatcatcca ttgaaagtaa aacatttcca aaattaatat
     7081 aaccaactgg atcacttgga tgttcttcaa ttacttctgt aaataacttg actgcttctt
     7141 ctaaatttcc ttcttgcatt tgtttaatac ctaattgatt tttatccatg ttatccctct
     7201 tatctttcct gattttttac agatgtatta agccacgtaa tgagcgcatt cgctacttga
     7261 tcagtttgtt ctggtccact aatcgttgct tttccgtccc catgttgttc gccatatgaa
     7321 ccgaactgcg catgatttcc acctttaata gagacaaaag tagtatcttt aggtaagtat
     7381 tttttatttt tattataaga atcttggttt aacacttcat ccttagtcgc tgtgatagaa
     7441 agcgctggaa aagaagcatt ttttaaggaa cctttcttat ctgggtaact agctaagaaa
     7501 aacgcgcctt ctatttcgct ttcgttatca tgtgcaaatc tagaagacat cacgccacca
     7561 agcgagtgtc caccaatgac aaatttttca tccggagcct catcaataat atcagcagct
     7621 cgatttttac caaatacagc taaattaagg ggcatttcaa cgatgtacgt tttgtaaccg
     7681 ctcgaagcta gtttgtttgc aagaggtgca taacttaacg catcaacaaa agcacctgga
     7741 tataaaataa cactcatatc tgcatccaat ttacgtggag taaaaacaag gatgtcattt
     7801 tcttcaagca catccaccgc tttagttgaa tttgcagcat tttctgcagt tgtagacggt
     7861 tctgagttga aataaaaata tccccaaata agaagacaaa ataaaacaat cgcactccca
     7921 aaaatcgcta tctttttcat aaaggacctc ttttccctgt ttcgtataat attttaccat
     7981 aaaatctgtt taaaaaaacg catttaaaca agaaaaaaac cggagtctcg tagaaaacaa
     8041 gattctccgg ttccaatttt agcctacata atctaacttc gcgccgtttt tccaaaccgt
     8101 atcgattgtt ccaccaccaa ggcaaatgtc cccgtcgtaa aatacaaccg cttgacctgg
     8161 tgtgattgct cgaactggat cagcgaaaac tacttctgct gtcccatctt cgcgcaagtg
     8221 cacggttact ttcgtatcag tttgacgata gcggaatttg gcagtacatt cgattgtttt
     8281 cggtttttct gcattcgttg tgaaagaaat atctgtcgca attaacgaat ctgaatatag
     8341 tgtttcatga tggaaacctt gttccacaaa caatacattt tcttttaagt ctttaccaac
     8401 aacaaaccaa ggttcaccgt ctcccccaat acctaaacca tggcgttgac cgatcgtgta
     8461 atacatcaag ccgtcatgtt tccctaacac ttcaccgttc agtgttctca tttcaccagg
     8521 ttgcgccgga agatattcac ttaaaaattg cttaaagttt ctttcgccaa tgaaacaaat
     8581 cccagtgcta tcttttttgt ttgcagtagc aagtccggct tttttcgcaa tttcgcgcac
     8641 ttctgttttt tccatgccac caaggggaaa catcactttt ttcagttgat cttgtgaaag
     8701 ttggtttaaa aagtacgttt gatctttatt attatcgaca cctcgaagta attcaatttc
     8761 atcgccgact tttttcactt gtgcgtagtg accagttgcc acatagtccg caccaagact
     8821 ttccgcatgt tctaaaaatg ccttaaattt aatttcttta ttacacataa cgtctgggtt
     8881 tggcgtgcga ccgagcttgt attcatctaa aaaatacgta aacactttat cccaatactc
     8941 tttttcaaaa ttgaccgcat aataaggaat accgatttga ttggctacgc gaatcacatc
     9001 atcataatcc tccgttgctg tacaaacgcc aaattcgtcc gtatcatccc aatttttcat
     9061 aaagatgcca ataacatcat aaccttgttc ttttaatata tgagcagtga ctgatgaatc
     9121 tactccgcct gacatgccga caactacacg aatgtcacta ttatttgtac tcaaagttcg
     9181 ctcctcacct tcttatattt tcattaaacg cgttactact tcactaattt tcgtagccgc
     9241 catttccact tcttctaaat ggtttcctag tccaaaacta atccgaacgg tctcttgaat
     9301 cgctgggtga ttttcaccaa aaagagctac taatacatgc gatggatcta ctgttcccgc
     9361 cgtacaagcc gaaccactag aaactgcaat tccgtccata tctaaattca ttaataattg
     9421 ttcaatcgaa actcctggaa aacgcacact aaatacatgt ggcaaggtat tggcttctaa
     9481 tccattcact tcaaaatcaa gatctgccga acgccaaatt tctgccattc gttttttgaa
     9541 ggaaatatat tcctcatttt ttagctctcg ttcattcatc atgatagaag aagcagcact
     9601 aaaaccacag attcccgcta gattctccgt tccagcgcga cgttttcgtt cttgttctcc
     9661 gccgtgcatt tggtagataa gccgtgtgcc atttttgacg tataaaaaac ctacgccacg
     9721 tggtccattt attttatgag aagaagtagt taataaatca acccctagct ccgttacatt
     9781 tatatttaat agcccataag cttgtactgc atctgtatga aaaattgctt gatgattgcg
     9841 caacactgca ccaatctccg caatcggttg aatcgtgcct atctcattat ttccatacat
     9901 aatagaaact agaattgtat ctggacgcaa ggcctcttgt aaactctcta tagatactat
     9961 tccatgctca tctactggca aataggtaac ttcaaatcct tgcgtttcaa ggtattcaca
    10021 tgtttttaag acagcgtgat gctcaatttg agaagtaata atatgtttac cactttcttg
    10081 ctgtgctaaa gctgctccaa taatcgccaa gttatcgcct tctgttccac cacttgtaaa
    10141 aattatttct ttttctatag catggatact atctgcaatt gtatgacgag cttcatccaa
    10201 agcttttctt gcctctcgtc cagcgtaatg gatactggaa ggattgccgt acgtatttgt
    10261 aattgcgcca agcattgttt ggataacttc tggatgaatt ggacttgtcg cagcatggtc
    10321 taagtaaatt ctattttcca ttttttatcg cgtccttttt tgtagacgaa ttcctgttcg
    10381 ccgttaatcg tttcttattg taacagcaat actcctgtaa agtaaagagg aataactcct
    10441 atttacacgc aaaaaagaaa ccccaatcgt accgtttagg attcccttcc tttgaacccg
    10501 ctatcaatta aagcaggtgg gtgctctgtc taacggtttg cacttcctcg tgtgaaggca
    10561 tgtgcgccgc gccggaactc caagctccct aggtataaaa aattgttcgg ttcaaaaata
    10621 ttaggaacta tatcgaatac attagggttt cttttcttca tttagaatac catagaaaag
    10681 acgaaatttc aatgttagcg acttttcatt tggcactttt tttattcttt ttttgcttta
    10741 ttttcgttaa ttttttgata cacaccagca attgtctgct caaatttaga agtgaatttc
    10801 ggcgcataat acaatttgtt tttaagacga tctggtaaat attgttgttc cacccaagcg
    10861 ttatcataat tatgtggata tttataatca atcgctcgtc caagtttttc tgcaccagaa
    10921 taatgtccat ctcgcaaatg atctggcact tctccacttt ttccttggcg aatatctgct
    10981 agtgccgcat caatcgccat aatagcagaa ttggatttag gcgaaaggca aagctcgatg
    11041 acagcattgg cgagcggaat tctcgcttca ggaaacccga ctttttctgc ggtttgaatg
    11101 gctgcgagtg tatgcgcccc ggcctgtgga ctcgcaagac caatatcctc atatgccata
    11161 acgagcattc tccggctaat actgactaaa tctcccgcct caattaaacg tcccatataa
    11221 tggagtgccg cattcacatc gctaccacga accgattttt gaaaagcact taatacatca
    11281 taatgggcat cgccgtcttt gtcatgggct aaacttttct tttgtaaaca ctcctctgcc
    11341 acatcgagcg taatatgaat cacaccatcc tcatttggtt cagaagaaat gacagctaac
    11401 tctaaggcat tcagcgcact tcgcacatcg ccgttactcg ccgttgcaaa atgttttttc
    11461 gcaacctcat ctatttctac atcataattc ccaagcccgc gttctttatc tgaaagcgcc
    11521 cggtccattg ttatcataat atcttctacc gttagaggtt ttaactcgaa aatttgcgtt
    11581 cggcttcgaa tagccggatt aatcgcgata taaggattac ttgtcgttgc acctattaag
    11641 ataatcgcgc cactttcaag taatggtaat aaaaaatctt gtttcgcttt atccaaccga
    11701 tgtacttcat ctaaaagaag aataaccgtg ccgctcattt tcgcctcggc tgctacaact
    11761 tccatatctt ttttattatt ggtaactgca tttaatgtac ggaatgcata ttttgtactt
    11821 ccagcaatcg cacttgcaat cgaggttttt ccaattccgg gcggcccgta taatatcata
    11881 gaagataatt gttttgcttt gaccatccga taaataattt tatctttacc gactaaatgc
    11941 gtttgtccca cgatttcatc tagtgctttc gggcgcatcc ggtaagctaa aggttgaatt
    12001 gccatataac cgctccttct tatttgcttg tttactatta taacataaga acatctgtgc
    12061 gttcacccac ttgtttcctt tgccttcttt ctgtaattcc gatataatag atgcggtata
    12121 agcggttttg aaattactgg aggttaaata aaaatgaaga ttacaacaaa aggtcgctat
    12181 ggcctaacaa taacacttga actcgcaaaa agaattggtg atggcccaat ttctcttcgt
    12241 agtatcgccc aagataaaaa tttatcggaa cattatttag agcagttaat cggtcccctt
    12301 cgtaatgcag gaattgttaa aagtatccgc ggggctcatg gtggctacgt tttgaacggc
    12361 gatcctgaaa aaattactgc aggtgacatc atccgcacac tggaaggccc gattgtactt
    12421 gtcgaaagta tggaagatga agaagctgct cagcgtgaat tatggacacg aatgcgcaat
    12481 gctgtccgtg acgtgttaga tcaaacaaca cttgctgact tattaaaaca ttctacggat
    12541 gctgaactat cggatggtta catgttttat atttaatgaa aaaagcctat tttcgaatag
    12601 gctttttatc tgccatcgaa acggaaaata cagtctatta ttatctgatt attccgaaat
    12661 aaacatcaaa agcaaacaat tgaaaccgtt ttatgttaga taatctaacc aaatttattg
    12721 aattgataaa atattcttgc ctttattaaa atatagtg
//
LOCUS       DABQVC010000074        12710 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.074,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000074 DABQVC010000000
VERSION     DABQVC010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12710
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.074"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            72..284
                     /locus_tag="IBJ56_001447"
     CDS             72..284
                     /locus_tag="IBJ56_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417703.1"
                     /translation="MDEWWLIRIIKYIEIVSKAGHLTTKKEHFFDNCPQVSKSKQHGK
                     LALDTIFDAMFLMVESAINGVFISYN"
     gene            799..2022
                     /locus_tag="IBJ56_001448"
     CDS             799..2022
                     /locus_tag="IBJ56_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5011 domain-containing protein"
                     /protein_id="HAM3417704.1"
                     /translation="MKKIIALITAVALLSMIGFAFIPGTVANAANSSESSLTYKDVRS
                     GFYFVGYENVQLETGKTYKYTVAYEANVDMKMTDTITGQSAKAGLFTPKSSGAELNTS
                     YVSRTKNNVIDVADAGNKVFKHTFEFTAKENTKADIGVFLGAGSVLPTTPETTSLWKN
                     VTVTNETPLVQAEAPVISAEDKTINQNESFNPLNEVTASDEKDGDITKDIHVTKNTVD
                     TTKSGKYDVDYSVTNSSNLTTTKSIKVTVTPAAISKNTAPVINAKDQTIKVGDVFNVL
                     KGVTAKDNEDGDLTAKIKVTKDTVNNSKKGVYQVTYTVTDSGNLSASLTIKVTVTQDG
                     KLIVNPSDPTKPSITKTPVEPTKIEKDPENRATSVLKASKIPKTGDSSMIWLVFVGLG
                     LTAIGISSYQKKANK"
     gene            2139..2789
                     /locus_tag="IBJ56_001449"
     CDS             2139..2789
                     /locus_tag="IBJ56_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3417705.1"
                     /translation="MPKIAKGNRLENVAFEYIKNKITTGEYPTGYRVVEAKLSQELNM
                     SRTPIRRAIINLCHSGFLVHQYNRGAFVQNTEVTITEFFSRMKLVELLMYESTEKLIL
                     REDYIVVDDIIEIAEKVIQYEKNKEYELMRDTFEDFIVAFIGKLNNDYFNRIIQELWN
                     EIYDNATKEVRLIIVSASDRIAEELANIIEILKSWNYGELKKCFQHIMNAMILIAF"
     gene            2834..3433
                     /locus_tag="IBJ56_001450"
     CDS             2834..3433
                     /locus_tag="IBJ56_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014952531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417706.1"
                     /translation="MLVIVAASVGYYFIKENERKTPQTIDYKTVETKRTDLSVYVSAE
                     GHIVKKENEWPDYEDFAVKIMVDELEINQIKEKQTADVYVEAVNNKVYKGKVVDINEK
                     GIINGSVTSYAVTIDLEDETKVKENMSVSADVLVALEKKILTIPIEAVNTDKADKHYV
                     YTVDANKQKKKIWIEVGKHNTKSIQVVKGLTEKQLVIIP"
     gene            3451..4125
                     /locus_tag="IBJ56_001451"
     CDS             3451..4125
                     /locus_tag="IBJ56_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417707.1"
                     /translation="MIQLFNISKSYQMGECTIKALDNVSLQIDQGEFLAIIGPSGSGK
                     STLMNILGILDRATIGEYYLNKTNLMRISDKKISRIRNRKIGFIFQQFNLMPRLTAFE
                     NVELPLVYRGVGKATRKKVVLKSLERVGLLDKEKHIPAQLSGGQQQRIAIARAIAGSP
                     ELILADEPTGALDSKTGEEVMTLLREIHREGNTLIMITHDKEIANQAERIIEIKDGKL
                     REWNKL"
     gene            4110..5288
                     /locus_tag="IBJ56_001452"
     CDS             4110..5288
                     /locus_tag="IBJ56_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014654183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HAM3417708.1"
                     /translation="MEQIMTLLQSIKLALKQLLSTKFRTFLTMLGIIIGVFSVILLVS
                     IGEAISKNVSTQLGDMGSNLLTVNFYSDNPNDKFTYKDAKKLLNEDEIGSPEVMQTKE
                     VRTSEKTASNQVAGINEYYASIKNLELASGRFCSNVDVIYAQKVTIIGSEIAKTYFKE
                     QNPIGEYLQIAGARYMVIGVLKEKGESLFGSADKKLFIPISSAERLFKTDTVDLYYIQ
                     TKKVEQVPAAVKVVKKKMSQFFPSNEDAYTVANQQQALDTFDSITGTLTIGLGAIAGI
                     SLLVGGIGIMNIMLVSVSERTREIGIRKAIGASSGNILMQFLIEAVVLSLVGGCIGIL
                     LGIFSAQIVTTTSSFEMYVSASTILLAVGFSMCIGIVFGVIPAQKASKKMPIDALRAD
                     "
     gene            5307..5450
                     /locus_tag="IBJ56_001453"
     CDS             5307..5450
                     /locus_tag="IBJ56_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003760374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BH0509 family protein"
                     /protein_id="HAM3417709.1"
                     /translation="MEKEQQTDDTWVLVEIVSLITNVERQRLRELSYTELEEFYERVV
                     VEQ"
     gene            5521..6003
                     /locus_tag="IBJ56_001454"
     CDS             5521..6003
                     /locus_tag="IBJ56_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HAM3417710.1"
                     /translation="MNESICKRDNGGAVVNFELEINATKAEVFALLTTNAGLAKWFNE
                     LEVGELGADGYLLFVMTPEEKITMPIRAFETNQKLAFEWDQDEVDFELNEITANKTRL
                     TFREQLTTITEHSPRDISGWHICLKKLQASAEGKIYDFNKTEFETLFAKYQKELNIEK
                     "
     gene            6172..6630
                     /locus_tag="IBJ56_001455"
     CDS             6172..6630
                     /locus_tag="IBJ56_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3417711.1"
                     /translation="MIVSEEQLFLNQHLRTKEEVLAFIADKAEEIGITTDSAQVERDL
                     WAREKEYATAVQQLIAIPHAKTEAISEAKLLFIRLTEPIDWESKEGFKAQAIFAILVP
                     ASEASQQHLKILSSVAVNLLEEAFQEQILTIKTEHELMDYLKDNLEGELI"
     gene            6627..6959
                     /locus_tag="IBJ56_001456"
     CDS             6627..6959
                     /locus_tag="IBJ56_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HAM3417712.1"
                     /translation="MKVVGVTSCIAGLAHTPMAAKALEKAGVKLGHDVKIEQQGAMGT
                     IDEITPAEVSAADVVIIAADKVIDGEERFKGKPVVRVKIGQCVANGEAVLSKVVAAIE
                     ARKQKEAN"
     gene            6963..8075
                     /locus_tag="IBJ56_001457"
     CDS             6963..8075
                     /locus_tag="IBJ56_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HAM3417713.1"
                     /translation="MKGKLNEAKDHLMSGISYALPVIIAGSLVVAVAKLIGIIGGVTN
                     LDAYADASGFYHYVYLFQNVGWAAIGLLNLVLAGYIAYSIAGKPALAAGFVGGVLATS
                     TNAGFLGAVVAGFFAGWLTNWVKKHVRITGPAASSLPLIILPLITVGATGILMSLILG
                     GPLGWLNQTLLDWVTEMCKNDTNVIILALILGAMIGFDLGGPVNKAAWMAGNALFMSG
                     IYLPSIMINVAICIPPLGYGIATLLRKKNYSTTFKEAGNGALIMGLIGVTEGAIPFTL
                     RSPGKLIPLNVIACAIGSAVTMGLGAYVKMPPIGGMYGFFTIGNGWAYLVGGLVGAFI
                     IGICANLFVNFTEEETAAADDAVDDIDISFDEIEIK"
     gene            8097..10724
                     /gene="mngB"
                     /locus_tag="IBJ56_001458"
     CDS             8097..10724
                     /gene="mngB"
                     /locus_tag="IBJ56_001458"
                     /EC_number="3.2.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosylglycerate hydrolase"
                     /protein_id="HAM3417714.1"
                     /translation="MAKTKVHVIPHSHWDREWYFTSSRSTIYLVKHLKEVIETLEAKD
                     DYHFYLMDAQSSLIEDYLHYCPEDKTRLEKLIAEKRLITGPWYTQTDQLVISQESIVR
                     NLLYGTRIAREMGHSMAVGYVPDAFGQGGNMPQIYKEFGISKFLFWRGVADNRLKQTE
                     FIWRGDDGTEMLAEQIPFGYYYGANIPENEAELKTYLDDQIGALEEKASTRNVYFPNG
                     LDQAPVRENLPELVAKFNELDSTREYQIASPETFFADLEKDVTNLPVIAGELTEGKHS
                     RLHKSIFSTRADLKQANNEIENFLSNVLEPVLSISYSLGNRYPHNELAEIWKLMFENA
                     AHDSIGGCNSDTTNRDVKHRYKLASDLATNLLDLNMRLISEKIEQKQPFQFTVFNPLP
                     YEKSGVIKMTAYIPEDNFEIEDTQGNTLEYTILEKTDLTDYVLNQHIDLNPSKSIYLP
                     EKVFLATMLVNVNSLPALGYDTIYFNLEKETAEQEPTQSTMTKIENEFYEIQLAANNS
                     LTIHDKKAGRTYTDQMLFVENGDDGDSYNYSPPRKDLVISSEEAVVESLESSISSVNQ
                     TLTISFKLNVPYNLEERANGEKSNEMTIKTVISLRKNEELIRFDVQVANQVLSHRLCV
                     TFATEIASKFSTADQLFAPIQRPVRLPEMDVWEAEEWQEAPISIEAMQSFVSLHDEAH
                     GVAVMTEGVREYEIIGENYDTISLTLFRTFSHMGKTDLLYRPGRASGESIVATPDAQL
                     LGEINATFALTLFESSFDEADIAKKAKEYLSNPPVYQMSDFLNGRLIYVYRDEEKTLD
                     ATYSLALPTIDGAIISAVKKAEDADAFITRFFNPYLQKEITIPEVFQGKERHLDESES
                     NEKQTRLKHAKVQSYLFEK"
     gene            10757..12691
                     /locus_tag="IBJ56_001459"
     CDS             10757..12691
                     /locus_tag="IBJ56_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3417715.1"
                     /translation="MGYFAYKRLETLYGMLLDAGSHLSAQKLSQDLHISERTIRTDIA
                     KLTEFLESYGATITLTRGAGYKIEILDSLVFQAFQAEKNKPKNAGYFDLDNPEERVKY
                     EIFMLLSSGDYIKLEDLADTIFASRATISNDMKQVRKVIAVYDLTLVSKPGSGVKIIG
                     EEEKMRYALTALIASKNAPESYLETFFEWHKQKDKLQKLMTAVTDYFFATNIRFTDEA
                     LQNLLLHMMILVERIELGHTLEKFELTDVSEEEIAIATKLSTIIESLFEIDIADADKN
                     YLLLQIASKRILNVEDKEISEFDDYAYIEGMLNRIESHYFYHLQDDMQLKKDLVAHIH
                     SMLYRVKYHMTVKNPMTEHIKRYYPLAYEITLDAVESLKKDYPYDINQNELAYLALHI
                     GASLERNYQISYYRHKSALIVCGSGFGTARIVEAKVKSAVSNLDITKVVSIQEYNRFI
                     HIEEDIILSTVRIPEKNKPVIKISNIPTNEELKMLGAIIQEQTDPNRGFLSNFFTADF
                     FARSSMTNKTAILEEMVDSLRQQNIVGEGFLQSVLEREKLGSTVLGTGIAIPHPLGLM
                     AKETKIVIRILDKPIKWDQKQSVRAVFLLCISKNDYEEAINIYELLVELVREEYGEKL
                     SRLSDFHAFTALANDILKKK"
BASE COUNT         4488 a         2123 c         2589 g         3510 t
ORIGIN      
        1 cgattgtatt ttttgtttgg gaaacccgat tttgtgtttg atcagtaaac acagtcgaaa
       61 agaatgttca tatggatgaa tggtggctga ttagaataat taaatatatc gaaattgtgt
      121 ccaaagctgg tcacttgaca actaaaaagg aacatttttt tgataattgt cctcaagtaa
      181 gtaaatctaa acaacatgga aaattagctt tggatactat ttttgatgct atgttcttaa
      241 tggttgaaag cgctataaat ggcgttttta taagctataa ttgatattgg ataacagttc
      301 caactacata atatagcgag gtgaaaacga tgaatttctt tctacaatta ttaggtaact
      361 tctctggcgg tttaaatttc ccagacgtaa cagaagtact aaacaactta atcaaagcaa
      421 tttttggttg atttcaaaaa aataaaacgt aaaggaggct actacaagtg aattttttct
      481 tacaattatt aggtaatttt tctggagcga ttaactttcc agacgtaaca gaagtactaa
      541 acaatctaat caaagggatt tttggttgat cctaagaaca taaatcagta aaggaggcta
      601 ctacaaatga attttttctt gcaattgtta ggtaattttt caggtgcaat ccgctttccg
      661 gacgtagcag aagtactaaa caacttaatc aaaggtatct ttggttaatt gccaattaga
      721 ataagttgaa atatagggtt aaggctaact taaccctatt ttctaattaa agatgtaaat
      781 aaggaggatt ttaaatccat gaaaaaaata atcgcgttaa tcacagcagt tgcacttcta
      841 tcaatgattg gatttgcctt tatccctggt actgttgcga atgcagcgaa ttcatcagaa
      901 agcagtttaa catacaaaga tgtacgcagt ggattttact ttgttggtta tgaaaatgta
      961 caacttgaaa caggaaaaac atacaagtac acagtagcgt atgaagcaaa tgttgatatg
     1021 aaaatgacag atactattac aggacaatca gcaaaagcag gactttttac accaaaatca
     1081 tccggtgccg agctgaacac tagttacgta agccgaacaa agaataacgt tatagacgta
     1141 gctgatgcag gtaataaggt ttttaaacac acatttgaat ttacagcgaa ggaaaataca
     1201 aaagcagata tcggtgtttt cttaggagca ggttctgttc ttccaacaac tccagaaacc
     1261 acgtcccttt ggaaaaacgt aaccgtgaca aatgaaactc cactagtaca agcggaggct
     1321 ccagttatta gtgcagaaga taaaactatc aatcaaaatg aaagttttaa tccactaaat
     1381 gaagtcactg cgtcagacga aaaagacggt gatattacaa aggacatcca cgtaaccaaa
     1441 aatacggtag atacgactaa gagtggcaaa tatgatgtgg attatagcgt tacaaattca
     1501 agcaacttaa caacgacaaa aagtattaaa gtaaccgtaa ccccagcagc aataagcaaa
     1561 aatacagccc cagttattaa tgcaaaagat caaacaatca aagttggaga tgtgtttaat
     1621 gtgttaaaag gagttactgc gaaagataac gaagatggtg atttaacagc aaaaatcaaa
     1681 gtgaccaagg atacagtgaa taattcgaaa aaaggtgttt atcaagttac atatactgtg
     1741 acagattctg gcaatctatc agcttcactt acaattaaag tgactgtaac tcaagatgga
     1801 aaactaatag taaatccaag tgatccaaca aagccatcta tcacaaaaac acctgtggaa
     1861 ccaacaaaaa ttgaaaaaga tcctgaaaat agagcgactt ccgttttgaa agcaagtaaa
     1921 ataccaaaaa ctggtgatag ttcaatgata tggctagtat ttgtcggact cggcttaaca
     1981 gctattggta ttagttctta tcaaaaaaaa gcaaataaat aatgcatact ggatgaaaag
     2041 agtattttag attagatact cttttcatta actagatggt aaaatggcat tctaaagctg
     2101 tttttaaaca gctttataga gagagagggg aatcatttat gccaaaaatt gctaaaggta
     2161 atcgactcga gaatgttgct tttgagtaca ttaagaacaa aatcacaact ggggagtatc
     2221 caacgggtta tcgtgttgta gaagcaaagt tatctcaaga actaaatatg agtaggacac
     2281 caattaggcg agcgattatc aacctttgcc attctggatt tttagtccac caatataatc
     2341 ggggtgcttt tgttcaaaac actgaagtaa ctattacaga atttttttcg cgaatgaaat
     2401 tagtcgaact attgatgtat gaaagtacag aaaaattaat tctacgtgaa gattatattg
     2461 tagtggacga tataatagaa atagcagaga aagtaattca atatgaaaaa aacaaagaat
     2521 atgaattaat gcgagatacg tttgaagatt ttatcgtcgc atttataggt aagctaaata
     2581 atgattattt taatagaata attcaagaat tatggaatga aatctatgat aatgcaacaa
     2641 aagaagtaag actaattatt gtttcggcaa gtgatcgaat tgcggaagaa ttagctaata
     2701 taattgaaat tttaaaatca tggaattacg gggaactaaa aaaatgtttt caacacataa
     2761 tgaacgcaat gattttgatt gctttttaaa gagaggtttt taaatattga aaaaaataag
     2821 ctgggtgatt atcatgctgg ttatcgttgc tgcatcggtt ggctattatt ttataaaaga
     2881 aaatgagcga aagacgccac aaacaattga ttacaaaaca gttgaaacaa aaagaacaga
     2941 tttaagtgta tatgtttccg cagaaggtca cattgtaaaa aaagaaaatg aatggccaga
     3001 ttatgaagat tttgctgtca aaattatggt agatgagcta gaaattaacc aaataaaaga
     3061 aaaacagaca gctgatgtgt atgtcgaagc agtaaataat aaagtataca aaggaaaagt
     3121 tgtagatata aatgagaagg gcattataaa cgggtcagta acttcttatg ccgtgacgat
     3181 tgatttagag gatgagacga aagtaaaaga aaatatgtct gtaagtgctg atgtacttgt
     3241 ggctctagaa aaaaagattt taacaattcc aatagaagct gttaatacgg ataaagctga
     3301 taaacattat gtctatacag ttgatgcaaa taaacaaaag aagaaaattt ggattgaagt
     3361 aggcaaacat aatacgaaat ctattcaagt agtaaaaggt cttacagaga aacaacttgt
     3421 gattattcca tagacggagg tgagcaagac ttgatacaac tatttaatat ttccaaatcc
     3481 tatcaaatgg gtgaatgcac cataaaggct ctagataatg tatcattgca aattgatcaa
     3541 ggggaatttc tggccattat cggaccgtct ggctctggaa aatctacttt aatgaacatc
     3601 ctcggtatac ttgacagagc aacgatagga gaatactacc tcaataaaac gaatttaatg
     3661 cgaatatcag ataagaaaat ttctcgaata aggaatagga aaattggttt tatttttcaa
     3721 caatttaatt taatgccacg acttactgct tttgaaaatg tagaattgcc attagtatat
     3781 cgaggtgtgg gcaaagctac tcgaaaaaaa gtagtattaa aaagtttaga acgtgtcgga
     3841 ctattagata aagaaaaaca tataccagcc cagctttcag gaggacagca gcaacggatt
     3901 gcaatagctc gagccatcgc tggaagtcca gaattaatat tagcagatga acctactggc
     3961 gcgctagact ctaaaactgg agaagaagta atgactttgc taagagaaat tcatagagaa
     4021 ggaaatacat taatcatgat tacccacgac aaagaaattg caaatcaagc agaacgaata
     4081 atagaaataa aagacggaaa actccgtgaa tggaacaaat tatgactctt ttacagagta
     4141 taaagttagc gctaaaacaa ttattgtcca ccaaatttcg aacattttta acaatgcttg
     4201 gaattattat tggtgttttt tctgttatat tacttgtttc gattggggaa gctatatcga
     4261 aaaatgtctc cacacaatta ggtgatatgg gaagtaatct tttgactgtt aatttttatt
     4321 cagataatcc aaacgataaa ttcacataca aagatgcaaa aaaacttttg aatgaagatg
     4381 aaattggttc gccggaagtg atgcagacaa aggaagttag aacaagtgaa aagacagcta
     4441 gtaatcaagt agcgggaata aatgaatatt atgcgagcat aaaaaatttg gaattagcat
     4501 caggccgttt ttgctcgaat gtagatgtta tctatgccca aaaagtgaca attattggct
     4561 cagaaattgc aaaaacttat tttaaagaac agaatccgat aggtgaatat ttgcaaattg
     4621 caggtgctag gtacatggtc attggagttt taaaggaaaa gggggagagt ttatttggat
     4681 cggcagacaa aaaacttttt atcccaattt cttccgcaga acgacttttt aaaacagata
     4741 ctgtggattt gtattatatt caaacaaaaa aagtagaaca agttccagca gcagttaagg
     4801 tagtaaagaa aaaaatgagc cagttttttc caagtaatga agatgcgtat acagttgcaa
     4861 atcagcaaca ggcgttagat acgtttgata gtattacggg aacactcacg attggactag
     4921 gtgcgattgc agggatttcg ctactcgttg gcggtattgg tattatgaat attatgctcg
     4981 tgtctgtctc agaacgaacc cgagaaattg gaattagaaa agcgattggc gcaagtagtg
     5041 gcaatatttt aatgcagttt ttgattgaag cagttgtgct tagtttagta ggcggttgta
     5101 tcgggatttt actaggaatt ttttccgcgc aaatagttac aactacatca agttttgaaa
     5161 tgtatgtttc tgcttctacg attcttttag cggttggttt ttcgatgtgt attgggattg
     5221 tatttggtgt aattcccgca cagaaagctt caaaaaaaat gccgatagat gcgttacggg
     5281 cagattaact agaggaggcg tgttggatgg agaaagagca acaaacggat gatacttggg
     5341 ttttagttga aattgttagc cttataacca acgtggaacg acaaagattg agagaactta
     5401 gttatacaga gttagaagaa ttttatgaaa gagtagtagt ggagcaataa ttaaatcttg
     5461 ctttttgcta gaatgataaa tctatgcgaa aatgaaagca aattggcagg agggatttaa
     5521 atgaacgaat ctatttgtaa acgggataac ggaggagctg tagttaattt tgaattggaa
     5581 attaatgcaa caaaggcaga ggtttttgct ttattaacga caaacgccgg actagcaaag
     5641 tggtttaatg agctggaagt aggcgaacta ggagcagatg gctatctact tttcgtcatg
     5701 acacctgaag aaaaaataac catgccaatt cgtgcattcg aaactaacca aaaacttgct
     5761 ttcgaatggg accaagatga agttgacttt gaactaaatg aaatcaccgc aaataaaaca
     5821 agattgactt tcagagaaca acttacaact attacggaac acagcccaag agatatttcc
     5881 ggttggcata tttgcttgaa gaaattacaa gcgagcgcag aagggaaaat atacgatttc
     5941 aacaaaacgg agttcgaaac gctcttcgcc aagtatcaaa aagaacttaa tatcgaaaaa
     6001 taaatccttt agaaaagtcg taaatgaagc cgagaatgct ttgtttatgg ctttttttgt
     6061 atgtattaat ttttttccac tttaactgga aattccttat gttcaaaaaa gtaatcggtt
     6121 tcattagaat gtaattgtaa gcaaggcatt gaaaaaatac ggggtgacga aatgatagta
     6181 tcggaagaac aattattttt aaatcagcat ctacgcacaa aagaagaagt gctagctttt
     6241 attgcagaca aggcagaaga aatcggtatc acaacagatt cagctcaggt ggaacgtgac
     6301 ttatgggctc gcgaaaaaga atacgcaaca gcagtacaac aattaatcgc tattccacat
     6361 gcgaaaacag aggcaatatc agaagcaaaa ctgcttttca ttcgcctcac tgaaccgatt
     6421 gattgggagt caaaagaagg ttttaaggca caagccattt ttgccatatt agttccagct
     6481 agtgaggcca gccagcaaca tctgaaaatt ttatctagcg tggctgtgaa tttactagaa
     6541 gaagcatttc aagaacaaat tttaacgatt aaaacggaac acgaattgat ggattacttg
     6601 aaagataatt tggaaggaga attaatatga aagttgtagg agttacgtca tgtatcgcag
     6661 gacttgcgca cacaccaatg gcagcaaaag cattagaaaa agcaggagta aaattaggac
     6721 acgatgtcaa aattgagcaa caaggagcga tggggacaat tgatgaaatc acgccagctg
     6781 aagtgagcgc ggcagatgta gttatcatcg cggcggataa agtaatcgac ggggaagagc
     6841 gtttcaaagg aaaaccagtc gttcgtgtga aaattggtca atgtgttgcg aacggggaag
     6901 cggtgttaag taaagtagtt gcagcaattg aagcacgtaa acaaaaggag gctaactaag
     6961 tcatgaaagg gaaattaaac gaagcaaaag accacttaat gtcgggtata tcctatgcgc
     7021 taccagtcat tatcgcaggt tcacttgttg tagctgttgc aaaattgatt gggattattg
     7081 gcggggttac aaatctggat gcttatgctg atgcaagcgg attttatcat tatgtttatc
     7141 tatttcaaaa tgtaggttgg gcggcaattg gcttacttaa cttagtactt gcgggatata
     7201 tcgcttattc aatcgctgga aaacctgctc ttgctgctgg ttttgttggt ggggtccttg
     7261 ctactagtac aaatgctggt ttcttaggtg ccgttgtcgc tggtttcttc gcaggttggt
     7321 taacaaactg ggtgaaaaaa catgttcgaa tcactggacc tgctgcaagt tctttaccac
     7381 taattatttt gccacttatc acagttggtg ccacggggat actgatgtca ctaattctcg
     7441 gcggaccgct tggttggtta aaccaaacgt tacttgattg ggtaactgaa atgtgtaaaa
     7501 acgatacaaa cgtcattatt ctagcactta ttttaggagc aatgattgga tttgaccttg
     7561 gtggacctgt aaacaaagct gcttggatgg ctgggaacgc gctatttatg agtggaattt
     7621 atctaccttc aatcatgatc aacgtcgcaa tttgcattcc gccacttggc tacggaatcg
     7681 caacactttt acgcaaaaag aattattcta ctacattcaa agaagctgga aatggcgcgc
     7741 taatcatggg actaattggg gtcacggaag gtgcgattcc atttacacta cgtagccctg
     7801 gtaaattaat tccgctaaat gtgattgcct gcgcgattgg tagtgccgta acgatgggac
     7861 ttggcgctta tgtgaaaatg ccgccgattg gtggaatgta cggtttcttc actattggta
     7921 acggctgggc ttacttagtt ggtggcttgg ttggtgcatt tattattgga atttgtgcga
     7981 acttattcgt caatttcaca gaagaagaaa cagctgctgc agacgatgct gtggatgata
     8041 tcgatattag ttttgatgaa atagagatta aataatagtt ggaggattta atgaaaatgg
     8101 ctaaaacgaa agtacacgta attccgcatt cgcactggga tagagaatgg tatttcactt
     8161 caagccgttc aacaatctat ttagtgaagc atttaaaaga agtaattgaa acattggaag
     8221 cgaaagacga ttaccatttt tacttaatgg atgcgcaaag ctcgttaata gaagattatt
     8281 tgcactactg cccggaagat aaaacaagat tagaaaaact gattgctgaa aaacggctta
     8341 ttaccgggcc atggtacaca caaacggacc aattagtcat ttcacaagag tcgattgtta
     8401 gaaacttgtt atatggtacg agaattgcac gcgaaatggg acatagcatg gctgtcggtt
     8461 atgtcccgga tgcgttcgga caaggcggga acatgccaca aatttataaa gaatttggaa
     8521 tttcaaagtt tctgttttgg cgcggagttg ccgataatcg cttaaaacaa accgaattta
     8581 tctggcgcgg tgatgatggg acggaaatgc tagcagagca aattccgttt ggctattact
     8641 acggcgcgaa cattccggaa aacgaagccg aacttaaaac ctatttggat gatcaaattg
     8701 gtgctctgga agagaaggcc tcaacgcgaa atgtctattt cccaaatggc ttagaccaag
     8761 cgccagttag ggaaaatttg ccagaattag ttgcgaaatt caatgaatta gatagcacgc
     8821 gggaatacca aatcgcatca ccagaaacat ttttcgcgga cttagaaaaa gatgtgacca
     8881 atttgccagt cattgctggt gaactaacag aaggaaaaca tagtcggctg cacaaatcga
     8941 ttttctctac tcgagctgat ttaaaacaag caaacaatga aatcgaaaac tttttaagta
     9001 atgtattaga gccggttctt tccatcagct actctcttgg aaatcgctat ccgcacaatg
     9061 aactcgcaga aatttggaag ttaatgtttg aaaatgctgc acatgatagc attggcggct
     9121 gtaatagtga tacaaccaac cgcgacgtca aacatcgtta caaattggct tcggatttag
     9181 cgaccaattt actcgattta aacatgcgcc taatcagcga aaaaatcgaa caaaaacaac
     9241 cgttccaatt taccgttttc aacccactac catacgaaaa aagcggtgtg attaaaatga
     9301 ccgcgtatat cccagaagat aatttcgaga tagaagatac gcaaggaaac acgcttgaat
     9361 acacgatttt agaaaaaaca gacctaactg attacgtctt aaatcaacat atcgacctaa
     9421 atcctagcaa atccatttat ttgccagaaa aagtcttttt agcaacaatg ctagtaaacg
     9481 taaatagtct tccggcgcta ggctacgaca ccatctactt taatttagaa aaagaaacag
     9541 cggagcaaga accaacacaa tccaccatga caaaaatcga aaacgaattt tatgaaatcc
     9601 agctagctgc caacaattca ctcacgattc atgataaaaa agcgggcaga acctatacag
     9661 atcaaatgct ttttgtggaa aatggcgatg atggcgattc gtataactat tcgccaccac
     9721 gtaaagacct tgtaatctca tcggaagaag cggtagtgga aagcctagag tctagtatat
     9781 caagcgtcaa ccaaacatta actatttcct tcaagttaaa tgtaccgtat aatttagaag
     9841 aacgtgcaaa tggtgaaaaa agtaacgaaa tgactatcaa aacagtaatt tctttacgta
     9901 aaaatgaaga actcattcgc tttgatgtac aagttgctaa tcaagtattg agtcatcgtt
     9961 tatgtgttac attcgccacc gaaattgcta gcaaattctc aacagctgat caattattcg
    10021 caccaatcca gcgtccggtt cgtcttccag aaatggatgt atgggaagca gaagaatggc
    10081 aagaagcgcc aatttcgatt gaagctatgc aaagttttgt cagcttacac gatgaagctc
    10141 atggggttgc tgtaatgaca gagggcgtac gcgaatatga aatcattggc gaaaattacg
    10201 atacgatctc gctaaccctg ttccgcacat ttagccatat gggtaaaact gatttactat
    10261 atcgtcctgg tcgcgcttcc ggtgagtcaa tcgttgcgac accagacgca caactgcttg
    10321 gcgaaataaa tgccacattt gcgctaactt tattcgaaag ctcttttgac gaagcggata
    10381 tcgcgaaaaa agcaaaagaa tatctatcga acccgccagt ttaccaaatg tctgattttc
    10441 taaacggccg cttgatttat gtttaccgcg atgaagaaaa aacgctagat gccacatata
    10501 gcttggcact tccgacaata gatggagcga ttattagtgc agtaaaaaaa gccgaagacg
    10561 ccgatgcctt cattacacgc tttttcaatc catatttaca aaaagaaatt accattccag
    10621 aagttttcca aggcaaggaa cgccacttgg atgaaagcga atcaaacgag aaacaaacga
    10681 gattaaaaca tgcaaaagta caaagctatt tatttgaaaa ataacgctta actacctaaa
    10741 aaaggagctg ctaataatgg gatatttcgc ttataaacgt ttggaaacac tatatggcat
    10801 gctccttgat gcgggtagcc acttatcagc tcagaaactc agccaagatt tacatatttc
    10861 cgaacgtacg atacgaacag atattgctaa actaactgaa tttctcgaaa gctacggggc
    10921 aacgataacg ctaactcgag gcgcgggata caaaatcgaa atccttgatt cgttggtttt
    10981 tcaagctttt caggccgaaa aaaacaaacc aaaaaatgcg ggttattttg accttgataa
    11041 tcccgaagaa cgcgtgaaat acgagatttt catgctgcta tcaagcggcg actatattaa
    11101 attggaagac ttggcagata cgatttttgc tagccgtgca accatttcaa atgatatgaa
    11161 gcaagtacga aaagttattg cggtgtatga tttaacgctc gtctcaaaac caggtagcgg
    11221 cgtgaaaatc atcggagaag aagaaaaaat gcgctatgct ctaaccgcgt taattgcttc
    11281 caaaaacgcc ccggaatcct acttagaaac atttttcgaa tggcacaaac aaaaagataa
    11341 actgcaaaaa ttaatgacag ctgtgacgga ttattttttt gcgaccaaca ttcgtttcac
    11401 agacgaagcg cttcaaaact tacttttaca tatgatgatt ttggtggaac gaattgaact
    11461 cggtcatacg ttggaaaagt ttgaattaac ggatgttagt gaagaagaaa tcgcgattgc
    11521 gactaaattg tctactatta tagagtcgct tttcgaaata gacattgcgg atgcggacaa
    11581 aaattatttg cttctccaaa tcgccagcaa acgaattctg aatgtagaag ataaagaaat
    11641 tagcgaattt gatgattacg cgtatattga aggcatgttg aaccgcattg agtcccatta
    11701 cttttatcat ttacaagatg atatgcagct taaaaaggac cttgttgctc atattcattc
    11761 catgttatat cgagtaaaat accatatgac cgtcaaaaat ccaatgacag agcacattaa
    11821 acgctattac cctttagcct acgaaatcac gctcgatgca gtggaatcac taaaaaaaga
    11881 ctacccgtat gacattaatc aaaatgaatt agcctattta gcgctgcata ttggggcatc
    11941 cttagagcgg aattatcaaa tctcttacta tcgtcataaa tcagccttga ttgtttgtgg
    12001 gtcaggcttt ggaacagcac gaattgtaga agcgaaagta aagtcagcag tgagtaatct
    12061 cgatattaca aaagtagttt caatccaaga atataaccgt tttatccata ttgaagaaga
    12121 tatcattctc tccaccgtta gaatacctga gaaaaataaa ccggtcatca aaatcagcaa
    12181 tatcccaacc aatgaagaat taaaaatgct tggtgccatt attcaagaac aaaccgatcc
    12241 taaccgcggc tttctatcga attttttcac agctgatttt tttgccagaa gcagtatgac
    12301 aaacaaaaca gcaattttag aagaaatggt tgactcatta cgccaacaaa atattgttgg
    12361 tgaaggcttc ttgcaatcgg ttcttgaacg tgaaaaatta ggctcaactg tactcggaac
    12421 cggaatagca atcccacatc cactcggact aatggccaaa gaaacaaaaa tcgttattcg
    12481 gatattagat aaaccaatca aatgggatca aaaacaatcc gttcgcgccg tatttttatt
    12541 atgtattagc aaaaatgatt atgaagaagc cattaatatt tatgaattgc tagtagaatt
    12601 agtacgcgaa gaatatggtg agaagctttc aaggctttcc gactttcatg cattcactgc
    12661 tttagcaaat gatattttga agaaaaaata aaagctactt ccttttttag
//
LOCUS       DABQVC010000075        12599 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.075,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000075 DABQVC010000000
VERSION     DABQVC010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12599
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.075"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(6..1301)
                     /locus_tag="IBJ56_001460"
     CDS             complement(6..1301)
                     /locus_tag="IBJ56_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid biosynthesis protein"
                     /protein_id="HAM3417716.1"
                     /translation="MANLKVIENEATILASIPKHNVDYNARVMQSVSVDYERDMIYWT
                     QQYSGKKMTDAGAGESYNITRTDLKGNYIDQMWCLNGGHGTNIALDYNLESKKMHIWS
                     AYKINNKWEVVCYPYESNKILKGTESSIFISKVESGSYNRISGDLKNDMLVFHSGGDP
                     KTFNIRIVRASSVREGKLEVLYKVKATEANDAYVYQGCALDFPYLYTASGTGGVEEPK
                     QLTCVDIVTGKRVYQTTFKFNTKAMQTTESNFAEPENVCVYYKNNQKHIVVGYALGGA
                     GNRMNRAFDLVENNSENIETEIESLRNLIISRKRTEVIFDQSTKGDMTTNFKLRETLN
                     NFDIIQVVLESGGGYTTASRLVSPKLFEASKSFIFASSNIGDTSGNNVDMYEYAANFN
                     DDLTSFKNDRAVKIEVSNNGTVRGNITNMGIKKIYGIVL"
     gene            complement(1430..3691)
                     /locus_tag="IBJ56_001461"
     CDS             complement(1430..3691)
                     /locus_tag="IBJ56_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HAM3417717.1"
                     /translation="MAQKQLFEIEPWTLRTTKLDKENKRLQESLTSLGNGYMGMRGNF
                     EEGYSGDGHIGTYYAGVWFPDKTRVGWWKNGYPDYFGKVINGLNFIGIEVRLDGEKLD
                     LFVDEVSDFELVLDMEKGVLRRQFTVVKNNKTFRISAERFLSVATKELAVIHYQVEAL
                     SPAKVELTSFLDGNVQNEDANYEEMFWQEVEKASLASRGSLVTKTIPNNFGTPRFTVS
                     AVMENTTNTANQTNQTKALYAENHFQFDLKENEVAQIEKRVVITTSRDYEERQILPAG
                     EKILQSLEAKTYDELLAAHVAGWRERWDKADVEIAGDDSAQQGIRFNIFQLFATYYGE
                     DARLNIGPKGFTGEKYGGATYWDTEAFALPMYLSLTDKSVSHNLLKYRHDQLDGAKIN
                     AQKIGLAGALYPMVTFTGVECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDDSYLKTD
                     GIEVLTEITRFWADRVHLSDRLDKYMIHGVTGPNEYDNNVSNNWYTNYIAAWTIRYTL
                     ENLDAEAKKRLGVTEYEIAKWEDIEHRMYYPFDEKWQIFVQHDTFLDKELRSTDTLKP
                     EDMPINQNWSWDKILRSCFIKQADVLQGLYLFYDDFDFDTKQRNFEFYEPLTVHESSL
                     SPAVHAVLASELGKYDKAVELYKRTARLDLDNINNDTEDGLHITSMAGSWLSIVQGFA
                     GMRVTDGELSFAPFLPDGWENYRFKINFRDRLLEVKVERNSVEITLLAGKAFEINLYG
                     EPQELHSTVNVTK"
     gene            complement(3707..4540)
                     /locus_tag="IBJ56_001462"
     CDS             complement(3707..4540)
                     /locus_tag="IBJ56_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1189 domain-containing protein"
                     /protein_id="HAM3417718.1"
                     /translation="MKKVPFIIQYVKSTLGPTAIFEGRKVLKFWQMVIVFIFLNALLL
                     LPVSAHFANQSSFDLPSLMPKMAALGTDQLATEVSALTLENGELTDKNAHIVEKSANG
                     VAGVNLTKAELSGAKNVINFKDQEMTLTDSSGYTFEVSYPKDATLSEITSGESLVDWV
                     SAQWYLENQAFVFLSMVLMIGSIIFVSSLMLTVFTTLFIWMTKRSSFSSIASFKESVN
                     LTLNALGIPVIAACIIGFIYFDITIIMAVQSLGMVLMIAWTFLKTRFYKTSEKSMAAS
                     R"
     gene            complement(4568..5419)
                     /locus_tag="IBJ56_001463"
     CDS             complement(4568..5419)
                     /locus_tag="IBJ56_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3417719.1"
                     /translation="MRDFMKDQRTTKFLTQFFTYLFLTVLTIIILYPILITASSAFKP
                     GNIAAFTLEWSDSWTLNNFTRLFNETLYLDWYKNTLIIAVVTMIMQVTIVTLAGYTYS
                     RYRFKGRKNSLIFFLIIQMVPTMAALTAFYVLAMLLGALDQYWFLTLIYIGGGIPMNT
                     WLMKGYFDTVPRDLDESAKLDGAGHFRIFAQIILPLVRPMIAVQALWAFMGPFGDFLL
                     AKFLLRTPENLTIAVGLQTFIANPQQQKVALFAAGAILAALPICLLFFFLQKNFVSGL
                     TAGGTKG"
     gene            complement(5420..6727)
                     /locus_tag="IBJ56_001464"
     CDS             complement(5420..6727)
                     /locus_tag="IBJ56_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3417720.1"
                     /translation="MKLEQKQIKNVRQATLLSIIPGLGQFYNKQNFKGIVFFALFALF
                     IIEFFAVGLNALIGLVTLGSVPGVDHSLFLMIEGTLQLIVTLLFIGFWFINIFDARRV
                     AMQWNLGETVNRSAIAIIKNMLDKGFPYLLTLPAYLVMTFVIIFPVLVTLFMAFTNYD
                     FYHIPPANLIDWVGFKNFFNIFFLSSYRDTFLSVFSWTLIWTICATSLQIVVGVFTAI
                     VANQSFIKGKRLFGVVFLLPWAVPAFITIMSFSNMFNDSIGAINSQVIPLLNHLPFVD
                     INAIAWKTDPFWTKVALISIQGWLGFPYIYVMVTGVLQAIPGELYEAARIDGASAIQR
                     FRKITLPMILFVTAPVFITQYTFNFNNFSIIYLFNEGGPGSVGAGAGSTDILISWIYK
                     LTTGTSPQYAVAAAVTLLISIIVITVSMIAFKKTNAFGNEEMM"
     gene            complement(6815..8074)
                     /locus_tag="IBJ56_001465"
     CDS             complement(6815..8074)
                     /locus_tag="IBJ56_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HAM3417721.1"
                     /translation="MKRFKKVGIVSAVLVMALSLAACGGGKDTSKSGSSDEKTLTVSV
                     DAGYKDYVNKIKGDFEKDNDVKVKVVEKDMFETLEALPLDGPAGTAPDVMMSAFDRIG
                     SLGQQGHLAEVKLGNKDDYDEKDQKQVTIDDKIYGAPAIIETLVLYYNKDLLDKAPAT
                     FKDLETLSKDSRFAFTSEKGKNTGFLAKWTDFYFSYGLLAGYGGYVFGDEGTNPKDIG
                     LNNKGSVEGITYATKWFQDVWPKGMQDNKSADDFIQDQFVKGKAAAILGGPWSAANYK
                     EAKINYGVAKIPTLNNGKEYSPFAGGKGWVVSNYSKNKDVAQKWLDYVTNQKNQETLY
                     DMTNEVPANLKARDTAKSKNDELTNAVIEQYKNAQPMPNIPEMSEVWTGAENLMFDAA
                     SGSKTPQQSADDAVKVIEDNVTQKYTK"
     gene            complement(8286..10061)
                     /locus_tag="IBJ56_001466"
     CDS             complement(8286..10061)
                     /locus_tag="IBJ56_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glycosidase"
                     /protein_id="HAM3417722.1"
                     /translation="MEKAGIYHQPASSYAYSYDAKTLHIRIRTKRLDISEVTLIAADP
                     YLWKDGKWQSESYTMRKIAETEEHDYWFFAITPEHRRLQYGFLLTDTEGETTFYGGRG
                     FFEPTEANLATMDYYFKFPFIHAVDTFEAPEWVGNTIWYQIFPERFANGNPAISPENA
                     LPWGSKDPNTTDFFGGDIEGIIEHLDYLAELGINGVYLTPVFEAPTNHKYDTVDYKKI
                     DPHFGDKETFRKLVQEAHKRGIRIMLDAVFNHIGDTSAEWQDVVLNEEKSAYRDWFHI
                     HSFPVRQNENGNIEGEPTLSYDTFAFTTHMPKLNTANPEVQKYLLDIATYWIREFDID
                     GWRLDVANEVDHAFWKEFKKAVQAEKEDIYILGEIWHDSWIWLLGDEFHAVMNYPFTQ
                     TIIENFIEEKITPEQMVSGINEQYMRYPNQVNEVMFNMLDSHDTARILTRANNDEDKV
                     KQALAFMFAHTGSPCIYYGTEIGMDGGNDPGCRKCMEWDETKQNQDMLAFTKQLIALR
                     KDNQAIITSGELTWLGASSETGITAFSKELNGEKLHFLFNQAKEDKDFTISFENTATD
                     IWNNRAVTENLVVPAKGFLVIKENS"
     gene            10319..10954
                     /locus_tag="IBJ56_001467"
     CDS             10319..10954
                     /locus_tag="IBJ56_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HAM3417723.1"
                     /translation="MENTLSFKKQGYWLFSSAIIIGVLFLLLPHIISNIGVLEFIGAF
                     FNALCMGVIAFIILKAEFLDWFKHFSFKWILIGAPALIIISSIFNIAWAYFAGSTTEN
                     GINSVLTWSYVFTSIPFMLLGEELLSISLLYAAWKKWNWKFWQASLLCSLLFATWHLT
                     SYDFNFLQCIITLAPARLILNYLFKKTNSIWVTFIVHFIFDFIAFLPILLK"
     gene            complement(10990..11955)
                     /locus_tag="IBJ56_001468"
     CDS             complement(10990..11955)
                     /locus_tag="IBJ56_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HAM3417724.1"
                     /translation="MATLADVAKRANVSKMTVSRVINHPDQVSDELKMLVYSAMEALE
                     YVPNYAARALVQNRTQVIKFLILEEIDTVEPYYMNLLTGISRELDKYYYSLQLVTQRS
                     RNIGAYDGLIVTGIRDKDYDLGLLDIDKPVIFYGENKRGYDSIDVDNKKGTALATEHM
                     VEIGFSRIVFLGIDLLDEQFMKSRLEGYEEIVKEHGLEPESYFIANSSSVAEEKAFEL
                     LRYNSEKIAIVCASDRIAIGVVRAAAAFGRRFGENIAVTGFDGVFLDRISSPKITTVQ
                     SPVVEMGEELAKMLLAKINDHGKPQGNLLFTPELLIRASTTGKEE"
     gene            complement(12094..12330)
                     /locus_tag="IBJ56_001469"
     CDS             complement(12094..12330)
                     /locus_tag="IBJ56_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417725.1"
                     /translation="MQEQDIRYYVLPTIIIFILGIAAMNASSFPFISFLTTTLVAIAI
                     GIIIGGAHQLIRLIIKTYQQTKERRVSQKKWQTL"
BASE COUNT         3740 a         2615 c         2053 g         4191 t
ORIGIN      
        1 atttattaca aaacaatacc atagattttt ttaataccca tattcgtaat attaccccgt
       61 actgttccgt tatttgaaac ttcgattttg actgcacgat cattcttaaa agatgttaag
      121 tcatcattaa aattagcagc gtattcgtac atatctacat tatttccact agtatcacca
      181 atattactcg aagcaaaaat aaatgattta gatgcctcga atagttttgg cgatacgagt
      241 cgagatgcag ttgtataccc cccaccagat tcaaggacaa cttggataat atcaaaatta
      301 tttaacgttt cacgtaattt aaaatttgtt gtcatatccc ctttagtact ttgatcaaaa
      361 ataacttctg tacgttttct acttataata aggtttctta aactttcaat ttctgtttct
      421 atgttttcac tattattttc tacaagatca aatgctctat tcatacgatt ccctgctcct
      481 cccaaagcat atcctactac aatatgcttt tggttatttt tataatatac acaaacattt
      541 tccggttctg caaaattgct ttctgtggtt tgcattgctt ttgtattgaa cttaaatgtt
      601 gtttgataca cacgttttcc agttactata tccacgcaag ttaattgttt tggttcttca
      661 acgccaccag taccagaagc tgtatataaa tatggaaaat ctaacgcaca cccttggtaa
      721 acatatgcat catttgcttc agttgccttt actttataaa gtacttcaag ctttccctct
      781 cttacagagg aagcacgcac gattctaata ttaaacgttt taggatctcc acctgaatga
      841 aaaaccaaca tatcgttttt caaatctcct gaaattcggt tatagctgcc actctctact
      901 tttgaaatga aaatactgga ctcggttccc tttaggattt tattactttc ataagggtaa
      961 caaaccactt cccatttatt gttaatttta tatgccgacc aaatatgcat ttttttactt
     1021 tctaaattat aatcaagtgc aatatttgtt ccatgcccac cgtttaaaca ccacatttga
     1081 tcaatgtaat ttcctttcaa atctgtcctc gtaatgttat atgactcccc agctccagca
     1141 tcagtcattt tttttccgct gtactgttgc gtccagtaaa tcatatctcg ctcgtagtca
     1201 acagaaacag attgcattac tctagcattg taatcaacat tatgtttagg tatagaagct
     1261 agaatagttg cttcattttc tattactttc aaatttgcca ttatccgatc cccttttgat
     1321 ttattatcag ctgataaact aagtataaga caaattaact ttcaaaaagt atcgaaaaag
     1381 tatcatcaaa aaactcgcat caggctatct gatacgagtt tttcattttt catttagtta
     1441 catttacagt tgaatgaagc tcctgtggtt ctccatataa gttaatttca aaagcttttc
     1501 ctgcaagtag tgttatttcc acactatttc tttctacttt cacttctaac aaacgatctc
     1561 ggaagttgat tttgaaacgg taattttccc agccatcagg taagaatggt gcaaagctta
     1621 attcgccatc agttactcgc ataccagcaa agccttgaac gatggataac cagcttcctg
     1681 ccatagaggt aatgtgcagt ccatcttctg tatcgttgtt aatgttatca agatctagtc
     1741 ttgctgtacg tttgtatagt tctactgctt tatcatattt accaagttct gaagctaaca
     1801 ctgcgtgaac agctggcgat aagctagatt cgtgtactgt taatggctca tagaattcaa
     1861 agttacgttg ttttgtatca aaatcaaagt catcatagaa taaatataaa ccttgaagga
     1921 catctgcttg tttaatgaaa caagaacgta aaattttatc ccaagaccaa ttttggttaa
     1981 tcggcatatc ttctggtttt aatgtatccg tggaacgtaa ctctttatct aagaacgtat
     2041 cgtgttgcac aaaaatctgc catttctcgt caaaaggata atacatgcga tgctcaatat
     2101 cttcccattt ggcgatttcg tactcggtca cacctaaacg ttttttcgct tctgcatcta
     2161 agttttctag cgtataacga atcgtccaag cggcgatata gtttgtatac cagttattgc
     2221 tgacgttatt atcatattca tttggtcccg ttacaccgtg aatcatgtat ttatctaagc
     2281 gatcagataa atgaacgcgg tcggcccaaa aacgagtgat ttcagtcaat acttcgattc
     2341 catctgtttt taaatacgaa tcatcgccag tgtaatttgt gtaattgtaa atcgcataag
     2401 caatcgcgcc attgcggtga atttcttcaa atgtaatttc ccattcatta tgacactcga
     2461 ctccggtaaa agtaaccatt ggatacagtg cgccagctag gccgattttc tgcgcgttga
     2521 ttttcgctcc atccaattga tcgtggcgat atttaagtaa attgtgactc acagatttat
     2581 ccgttaacga taaatacatt ggtagtgcaa aagcttctgt atcccagtat gtcgcgccgc
     2641 catatttttc gcctgtaaag cctttaggac caatgtttag tcttgcgtcc tcaccgtaat
     2701 aagtagcaaa taattggaaa atgttaaatc ggataccttg ttgcgcggaa tcgtcgcctg
     2761 caatctcgac atccgcttta tcccaacgtt cacgccaacc cgcaacatgc gcggctaata
     2821 attcatcata cgtttttgct tctaagcttt gtaagatttt ttctcctgct ggaagaattt
     2881 gcctttcctc ataatcacga gatgtcgtaa tgactacacg tttttctatt tgcgctactt
     2941 cattttcttt taggtcgaat tgaaaatgat tttcggcgta aagtgccttt gtttgatttg
     3001 tttggtttgc cgtattggtc gtattttcca tcacagctga aacggtgaaa cgcggtgttc
     3061 caaagttgtt tggaatagtt tttgtgacaa gtgaaccgcg acttgctaat gaagcttttt
     3121 cgacttcttg ccagaacatt tcttcatagt tggcatcctc attttgcacg ttaccgtcta
     3181 aaaaggacgt taattctact tttgcggggc ttaatgcttc cacttgatag tgaataaccg
     3241 caagttcttt cgttgcaaca cttaggaatc gttccgccga aatccggaat gtcttattat
     3301 ttttaactac tgtgaattga cgtctcaaaa cgcctttttc catatctaaa acaagttcaa
     3361 aatcgcttac ttcatctaca aataaatcga gtttttcacc gtcaagacgt acttcaattc
     3421 cgataaaatt aaggccatta atgacttttc cgaaataatc cgggtagcca tttttccacc
     3481 aaccaactct tgttttatct ggaaaccaca cgcctgcata ataagttcca atatggccgt
     3541 cgccggagta tccttcttca aaattcccgc gcatccccat gtaaccatta ccgagtgaag
     3601 ttaggctttc ttgcaaacgt ttattttctt tatctagttt ggttgtccgt aatgtccatg
     3661 gttcgatttc aaataattgc ttctgtgcca tactaaaacc tcctaattag cgactagcag
     3721 ccatactttt ttcactagtc ttataaaatc ttgtctttaa aaatgtccat gctatcatta
     3781 acaccattcc gagcgactga acagccataa taatcgtaat atcaaagtag ataaagccga
     3841 taatacaagc cgcaatcact ggaattccca gtgcatttag cgttaaattt actgattctt
     3901 taaaagaagc aatgcttgaa aaactgctcc gttttgtcat ccaaatgaaa agcgtcgtaa
     3961 atacggttaa catgagtgag ctaacgaaaa tgatagaacc aatcatcagc accatcgata
     4021 ggaaaacaaa tgcttggttt tccaaatacc actgcgccga cacccaatca acgagcgact
     4081 cgcctgacgt tatttcgctt aaggtcgcgt cttttggata gctaacttca aaagtatagc
     4141 cactcgaatc cgtaagcgtc atttcttggt ctttgaaatt aattacattc ttcgctccac
     4201 taagttctgc tttcgttaaa tttacaccgg ccacaccatt agccgatttt tcgacgatat
     4261 gcgcattttt atcagttaat tctccatttt cgagcgtcag tgcactaact tctgtcgcca
     4321 attgatccgt gccaagcgcc gccatttttg gcattaaact tggtaaatca aagcttgact
     4381 gattagcaaa gtgcgccgaa acaggaagca acagtaacgc atttaagaaa ataaatacga
     4441 tgaccatttg ccagaatttc agtactttcc gaccctcaaa aatagcggtt ggaccgagtg
     4501 tactttttac atattgaatg ataaacggaa cttttttcat tgatatcaca gcctttttaa
     4561 aaatcaatta tccttttgtt ccaccggcag ttaagccaga aacaaaattc ttttgtaaga
     4621 agaagaacag taaacaaatt ggtagcgcgg ctaaaatggc gcccgctgcg aataaggcta
     4681 ctttttgttg ttgtgggttg gcgatgaacg tttgaagtcc taccgcaatc gttaagtttt
     4741 ctggtgttct aagaaggaat ttcgcaagga ggaagtcccc aaacggtccc ataaacgccc
     4801 ataaagcttg aacggcaatc atcggtctaa caagtggcaa gatgatttga gcgaaaatgc
     4861 ggaaatgtcc tgcgccatca agtttggcgg attcatctag atcacgcggc acggtatcga
     4921 aatacccttt catcagccat gtgttcatcg gaatcccacc accgatgtaa atcaatgtta
     4981 agaaccaata ttgatcaagt gcgccaagta gcatcgctaa cacgtagaaa gctgttaagg
     5041 ccgccatcgt tggtaccatt tgaataataa ggaagaaaat caagctgttt ttacgacctt
     5101 taaaacggta acggctatac gtataacccg caagcgtcac aatcgttact tgcataatca
     5161 tcgttacaac cgcgataatc agtgtatttt tgtaccaatc aagatataat gtttcattaa
     5221 acaatctcgt gaagttattc agcgtccaac tatccgacca ctcaagcgta aatgccgcga
     5281 tattccctgg tttgaaggca gaagatgctg ttattagaat cggatacaaa ataataatcg
     5341 ttagcacggt taaaaacaaa tacgtgaaaa actgtgttaa gaactttgtt gtccgctgat
     5401 ctttcataaa gtctctcatt tacatcatct cctcgttccc aaaggcattc gtcttcttaa
     5461 aggcaatcat cgaaacagta ataacgataa tagagataag aagcgtcaca gcagcagcta
     5521 cagcgtattg tggtgaagta cctgttgtta atttataaat ccatgaaatt aagatatcgg
     5581 ttgatcctgc gcctgctccg acacttccgg gaccaccttc attgaataag tatattatcg
     5641 aaaagttgtt gaagttaaat gtatattgcg taataaatac cggcgcggtt acaaataaaa
     5701 tcatcggtaa tgtaatttta cggaaacgtt gaatcgcact tgctccatca attctagctg
     5761 cttcgtatag ttcaccagga attgcttgaa gcaccccagt aaccataacg taaatatacg
     5821 gaaaaccaag ccaaccttga atactaatca gcgccacttt tgtccagaaa ggatctgttt
     5881 tccaagcaat cgcattgata tcaacaaatg gcaaatggtt tagaagcgga atgacttgcg
     5941 agttgattgc gccaatactg tcgttaaaca tattggaaaa actcataatt gtaataaatg
     6001 ctggtaccgc ccaaggaagt aagaaaacta ccccaaaaag acgtttccct ttaataaagc
     6061 tttggttcgc aacaatcgcc gtgaatacac caacgacaat ttgtaaagaa gtggcacaga
     6121 ttgtccaaat gagtgtccac gaaaatacgc ttaggaacgt gtcacgatac gaacttagga
     6181 agaaaatatt aaagaagttc ttaaatccaa cccagtcaat taagttcgct ggcggaatat
     6241 ggtaaaaatc atagttggta aatgccatga aaagagtaac aagaactggg aaaataataa
     6301 caaaagtcat cactaagtat gcaggtaatg taagtaagta cgggaaacct ttgtcgagca
     6361 tattttttat aatagcaatc gcagaacggt taacagtttc acctaggttc cactgcatag
     6421 ccacgcgtct tgcatcgaaa atatttataa accaaaagcc tataaatagt aatgtcacaa
     6481 ttaattgtaa agtaccttca atcattaaaa ataaggaatg gtctacaccc ggtacagatc
     6541 caagtgttac aaggccaatc agtgcattca gcccaactgc aaaaaattct atgataaaca
     6601 aagcaaatag tgcgaaaaag acaatccctt taaaattttg cttattataa aattgaccaa
     6661 gtcccggaat gattgataac aaagtcgctt gacgaacatt tttaatttgt ttttgttcta
     6721 gtttcatttt gttaccctca attctagata tagattcact agctaagttg aaaaaaatgg
     6781 cggagcgcgc tatctttgcc ccgccaaatc attattattt agtatatttt tgcgttacgt
     6841 tatcttcaat tacttttact gcatcatctg ctgattgttg cggtgttttc gaaccagaag
     6901 ctgcatcaaa cattaagttt tcagcacctg tccaaacttc cgacatttct ggaatatttg
     6961 gcattggttg cgcatttttg tattgttcga taacagcatt agttaattca tcattttttg
     7021 atttcgctgt atcgcgtgct tttaagttag ctggtacttc atttgtcata tcatataaag
     7081 tttcttgatt tttttggtta gttacataat ccaaccattt ttgagctaca tctttgtttt
     7141 tagaatagtt acttacaacc caacctttac cgcctgcaaa tggagagtat tctttgccat
     7201 tgtttagtgt cgggattttt gctacgccgt aattaatttt tgcttctttg tagtttgctg
     7261 ctgaccatgg accgcctaga attgctgctg ctttaccttt aacaaattga tcttggataa
     7321 agtcatctgc actcttattg tcttgcatac cttttggcca tacatcttgg aaccattttg
     7381 ttgcataagt aattccttca accgaacctt tattgtttaa accgatgtct tttggattcg
     7441 taccttcatc gccgaataca taaccaccgt atcctgcaag tagtccgtaa gagaagtaga
     7501 aatcagtcca ttttgctaag aaaccagtat tttttccttt ttcagaagtg aaggcaaaac
     7561 gagaatcttt agaaagtgtt tctaaatctt tgaaagttgc tggagctttg tcgagtaaat
     7621 ctttattata gtaaagtact agagtttcaa taattgctgg agcgccataa attttatcgt
     7681 caatggttac ttgtttttgg tctttttcat cgtaatcgtc tttatttcca agttttactt
     7741 ccgctaaatg tccttgttgg cctaagcttc caattctatc aaatgcggac atcattacgt
     7801 ctggagcagt tccagccggg ccatcaagtg gcaatgcttc taatgtttcg aacatgtctt
     7861 tttcgactac ttttactttc acgtcattat ctttttcaaa atcacctttt attttgttca
     7921 cgtagtcttt gtagcctgcg tcaacggaaa ccgttaatgt tttttcatca gatgagccag
     7981 atttactagt gtcttttcca ccaccacatg ctgctaagct taaagccatt actaaaaccg
     8041 ccgaaactat tcccactttt ttgaaacgct tcatttactt ttcctcctct ttatgaaaaa
     8101 agtcgccctt tactgtctga tttctaagtc ccatcttttt tcaattcttt ttaaagtttg
     8161 tgaattaggt taacctatgc atttattata tgctgatttc gaaagcgttt acaaggagat
     8221 ttcacatgtt accgataaca acattttttc ggtaaacatg tgaaaaattc ctttacgcca
     8281 ttgatttaac tgttttcttt aataacaaga aatccttttg ctgggacaac aagattttct
     8341 gttacagctc ggttgttcca aatatctgtc gctgtatttt caaatgaaat tgtgaaatct
     8401 ttatcttctt ttgcttgatt gaaaagaaaa tgcagttttt caccatttaa ttctttagaa
     8461 aatgctgtaa tgcccgtttc gctacttgca cctagccaag ttaattcgcc ggatgtgata
     8521 attgcttggt tatcttttct tagggcaatt aattgtttcg taaacgctag catatcttgg
     8581 ttttgcttcg tttcatccca ttccatacac ttacggcaac ctgggtcatt tcctccgtcc
     8641 atgccgattt cagttccgta ataaatacac ggcgaaccag tgtgcgcgaa catgaaggca
     8701 agcgcttgtt tcactttatc ctcatcatta ttagcacgag ttaaaatacg cgccgtatca
     8761 tggctatcaa gcatattaaa cattacttca ttcacttgat ttgggtagcg catatattgt
     8821 tcattaatac cagaaaccat ttgctccggt gtgatttttt cttcaataaa gttctcaata
     8881 atcgtttgtg taaatggata gttcattacg gcgtggaatt catctccaag taaccaaatc
     8941 cacgaatcat gccaaatttc accaagaata taaatatctt ctttttccgc ttggacagcc
     9001 tttttaaatt ctttccagaa agcatgatct acttcattag caacatctaa gcgccaacca
     9061 tcaatgtcaa attcgcgaat ccagtaagtt gcaatatcca gtagatactt ctgaacttct
     9121 gggttagccg tatttaattt tggcatatgc gtcgtgaaag caaatgtatc gtaagaaagt
     9181 gttggttctc cttcaatatt gccattttca ttttgacgaa cagggaaact atggatgtgg
     9241 aaccaatcac gatatgcaga tttttcttca tttaagacaa catcttgcca ctctgctgaa
     9301 gtatcgccaa tgtgattgaa caccgcatct aacataatgc gaatcccacg tttatgcgct
     9361 tcctgaacta attttctaaa cgtttcttta tctccaaaat gtggatcaat ttttttataa
     9421 tcaaccgtat cgtatttatg attggttggt gcttcaaaca caggtgtcaa ataaacccca
     9481 ttaataccaa gctctgctaa ataatctaaa tgctcgataa ttccttctat atccccgccg
     9541 aaaaagtctg ttgtgttcgg atctttactt ccccacggca aggcattttc cggagaaata
     9601 gccggattcc catttgcaaa acgttctggg aaaatctggt accaaatagt attcccaacc
     9661 cattcaggcg cctcaaaagt atccaccgca tggataaatg gaaatttaaa gtaataatcc
     9721 atcgtagcta aattagcctc agttggctca aagaaaccac gtccgccgta aaatgttgtt
     9781 tctccttctg tatctgttag taaaaagcca tattgaagac gtctatgttc tggtgtaatt
     9841 gcaaaaaacc aataatcgtg ctcttctgtt tctgcgattt tgcgcattgt ataagattca
     9901 ctttgccatt ttccatcttt ccataagtaa gggtcggcag caattagagt aacctcgcta
     9961 atatccaagc gtttcgttct aatccgaata tgtagtgttt tagcgtcata actataagca
    10021 tagctactcg ctggttgatg ataaatccct gctttttcca ttttttctcc tcctatatca
    10081 cctatcgttc tatttcaaat tagcatttcc attaaagcgt ttgcaacctt ttctcgctcg
    10141 ttaacggtaa caagattttc tagctatttc atattctttc aacatactat agaagaaagc
    10201 caattctccc tcctccttta aagtgacaaa ttagtaactt tactgattta aagtaaagag
    10261 ctataataac tcatggacta atgaaatcta tcgaaaaaag gtctaaaagg aggataaaat
    10321 ggaaaatact ttaagcttta aaaaacaagg gtattggtta ttttccagcg caatcattat
    10381 tggtgttctt tttcttcttt tgccacacat catttccaat attggagtgt tagaatttat
    10441 aggtgctttt tttaacgccc tatgcatggg ggttattgct tttatcatac taaaagcaga
    10501 attcctcgat tggtttaaac attttagttt caaatggatc ctcatcggtg ctccagcatt
    10561 aattattatc agctctattt tcaacattgc ttgggcttac ttcgcgggca gtactactga
    10621 aaatggtatc aacagtgtac ttacatggtc ttacgttttc acaagtatcc cgttcatgct
    10681 tcttggcgaa gaactactat ccattagctt actctatgcc gcttggaaaa aatggaactg
    10741 gaaattctgg caagcttcct tgctctgctc gttactattt gcgacgtggc atctgacttc
    10801 ctatgatttt aacttcttac aatgtatcat tactttagca cctgctagac tcattttgaa
    10861 ctacttattt aagaaaacaa actcgatttg ggttactttc atcgttcact tcatttttga
    10921 tttcatcgca tttttaccca ttttactcaa ataaaaaaac gctaggaata aagattccta
    10981 gcgtttttat tactcttctt ttccagttgt agaggctctt atcagtaatt caggagtaaa
    11041 taataggttt ccttgaggtt ttccgtgatc attaattttc gcaagtaaca tcttcgcgag
    11101 ttcttccccc atttcaacga cgggagattg aacagttgta atttttggcg atgaaattct
    11161 atctaaaaaa acaccatcaa accctgttac agcaatattt tcaccaaaac ggcgaccaaa
    11221 agcagcggca gcacgaacaa ccccaatggc aattcgatct gatgcgcaaa caatcgcaat
    11281 tttttctgag ttatagcgta gtaattcaaa tgctttttct tccgcgacac tggaactatt
    11341 cgcaataaaa taactttccg gttccaaacc atgttctttc actatttctt catagccttc
    11401 taggcgcgat ttcataaact gttcatctaa taaatcaatt cccaaaaaga cgattcgcga
    11461 aaaaccgatc tctaccatat gctctgttgc gagcgcagtc ccttttttat tatctacatc
    11521 aatagaatca tagccacgtt tattttcacc ataaaaaata actggtttat caatatctaa
    11581 aagtcctaaa tcataatctt tgtcgcgtat tcccgtgaca ataagcccgt cataagctcc
    11641 gatattcctg gatctttgcg taacgagttg aagcgaatag tagtatttat ctaactcccg
    11701 actaattcct gttaataaat tcatataata tggttcaact gtatcaattt cttctaaaat
    11761 caaaaattta ataacttgcg tcctattttg aacaagcgcc cttgcagcat aatttggtac
    11821 atactctaag gcttccattg cactataaac aagcattttc agttcatctg agacttgatc
    11881 tggatgatta ataacccgtg aaactgtcat tttggagaca tttgcccgtt tcgcaacatc
    11941 tgctaaagtc gccatctcca acctcctcca ttcataatct tccttattgt accatctttt
    12001 acacaaaaaa aaataagaat taacccacaa aaaaagcatt ctcattaaaa gtctgaaaat
    12061 gcttggttta ttatgaatat gtaatgagtc attttatagt gtttgccact ttttttgaga
    12121 gactctgcgt tccttcgttt gttgataagt tttaataatc aatctaatta attgatgagc
    12181 tccgccaata ataattccaa tagcgatagc aacgagcgta gttgtcagaa aactaataaa
    12241 tggaaaacta gatgcattca ttgcagcaat tcctaatata aaaatgataa tagtaggtag
    12301 tacataatac ctaatgtcct gttcctgcat acaaagcgct cctttaccca aaataataac
    12361 tcccatcaac tactgaaatt ataacgcgaa aactggcttt tttcaaggct tggatggatt
    12421 tccatgctcc tctttaaaaa cgttaaatgg ctctatatag cgctttatat agatacgcaa
    12481 aatccactca ttatgaattc atcaaaaaga aaaatttgtt accactttgt aacattactt
    12541 aagtccattt acttatatac tgtaacactt atatttattc aattttatag ataagtatt
//
LOCUS       DABQVC010000076        12581 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.076,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000076 DABQVC010000000
VERSION     DABQVC010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12581
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.076"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            117..2744
                     /gene="polA"
                     /locus_tag="IBJ56_001470"
     CDS             117..2744
                     /gene="polA"
                     /locus_tag="IBJ56_001470"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HAM3417726.1"
                     /translation="MNKLVLIDGNSIANRAFYALPLLNNDKGVYTNAVYGFAMMLMNV
                     LEKEKPSHVLVAFDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQY
                     ELANYEADDIIGTLTKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNT
                     PETLKEKYNLTPEQIIDMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHA
                     EEISGKKLKEKVLENKELAILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEM
                     NFTTLLKNIEGDTPEETKELKELSFEIVTELKEKHFGGKTALYVELENDNYHTANFIG
                     LTVHSSQGTYFFTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNRIGLAISGITFD
                     IMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESIVAAHLARKA
                     VAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAG
                     RLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGK
                     HAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQN
                     IPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHT
                     KTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFV
                     SYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGS
                     AADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE
                     LSVPLKVDSAFGDTWYDAK"
     gene            2768..3589
                     /gene="mutM"
                     /locus_tag="IBJ56_001471"
     CDS             2768..3589
                     /gene="mutM"
                     /locus_tag="IBJ56_001471"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HAM3417727.1"
                     /translation="MPEMPEVENVRATLQELVPGKKIDQVIVRVPKMIVSTPPDEFVH
                     MLVGQEIEGVRRRGKFLLFDLTNCTILSHLRMEGKFRLMDEKEEVSKHTHIIFHFEDH
                     TELRFLDVRKFGTMEVTNKYGEGETRSIKKLGPEPLTQAFTLTDFATGVKKTSRAIKT
                     ALLDQKLVAGVGNIYADEICFEAKVRPERAANSLSDKEIKRIFEATKSIMTEAVALGG
                     STVRTYVNSQGKLGQYQDKLKVYGKTDEPCVVCGTPIEKIKLNGRGTHFCPNCQK"
     gene            3606..4208
                     /locus_tag="IBJ56_001472"
     CDS             3606..4208
                     /locus_tag="IBJ56_001472"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HAM3417728.1"
                     /translation="MGKTIGLTGSVATGKSTVSNMIQQAGIPLVDADIAARKVVERGT
                     EGLKEIVAYFGEEILLADGTLNRAKLGEIIFKDKEKREKLNEITHPRVKDYMLEARER
                     FFEAGEELVFFDIPLLFESHLESLVDKIVVVWTTPETELKRLMERNNLTKEDALRRIE
                     SQMGIDEKARKADFVIDNNESLEKTQKQVLTFIKRFVKNK"
     gene            4286..4750
                     /gene="nrdR"
                     /locus_tag="IBJ56_001473"
     CDS             4286..4750
                     /gene="nrdR"
                     /locus_tag="IBJ56_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HAM3417729.1"
                     /translation="MRCPTCQYNGTRVVDSRPADDGNSIRRRRECEKCGFRFTTFEKV
                     EESPLIVVKKDGAREEFAREKVRRGLIRACEKRPVSAEQIEEIVNEVERELRNIGDSE
                     IASDLIGEKVMNKLANLDEVAYVRFASVYRQFKDISVFVEELKDLMEKNKDR"
     gene            4756..6132
                     /locus_tag="IBJ56_001474"
     CDS             4756..6132
                     /locus_tag="IBJ56_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase DnaB"
                     /protein_id="HAM3417730.1"
                     /translation="MTEFWMELQAVDSYQVKASGILTGADRKIITMLYQPLMGAECLA
                     LYQTLFTEVEENRLWSEAHSHVQLLNMLDISLKALFEARLKLEGLGLLKSYVKTENDQ
                     RFYIYEILPPLSPEKFFSDGLLNIYLYSKIGNAQFQRLRRFFADEAFDTATYSEITRS
                     FQDVFEPFKGGSSAVTTETSQKLLDKVTPKEIEFDDASFDFNLFLSLLSPGMIAREKI
                     TKEVRQTILKLHGIYQVSEKDMPSYLYRALDANGEIDIVYLRKIVREGYTIEHGAPPK
                     LQMKQETPVDKEPEESLNDEEALQVYLESITPFQLLVDISDGAVPAETDLRVVEEVMN
                     QQNLPVPVMNVLIEYVLLRLDRKLSKNYMMTIAAHWKRKNVKTAKEAMDLAWQEHEKY
                     KRLQEEPATPKTNNYNRNYQKTTRKEILPDWFDKEQVAPAENKMTDKEKQTLEEQVRE
                     IKERLNKR"
     gene            6142..7065
                     /gene="dnaI"
                     /locus_tag="IBJ56_001475"
     CDS             6142..7065
                     /gene="dnaI"
                     /locus_tag="IBJ56_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HAM3417731.1"
                     /translation="MDNIERTLGQLFEGRDFEKEYQGLKQQVLHYQPIQDFFKEHKEE
                     VTEQLVNQNLSNLYEFMTQHKKFTEQEETLMPGYAPKLVLNGEFITVTYYPTKEKIEE
                     DKRRAVERRIRSLYMPKQVVDANLADFYTDEESRQLALVEAYQFLNNYPPKSGERVKG
                     LFIHGSFGTGKSYLLGALAKELALKGISSTLVYLPEFMREVKQSISDNTVGEKIQFAK
                     ETEVLMLDDIGAESMTAWTRDEVLGAILQFRMQEELPTFFSSNYNMDQLENHLMFAQN
                     GTEEKLKARRIMERVRYLSKEVNLEGKNRRF"
     gene            7415..9337
                     /gene="thrS"
                     /locus_tag="IBJ56_001476"
     CDS             7415..9337
                     /gene="thrS"
                     /locus_tag="IBJ56_001476"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HAM3417732.1"
                     /translation="MKITFPDGAVKEFEPGVSTADIAASISPGLKKKALAGKLNGELL
                     DLVTPIHEDGAIEIVTPDHEDALGILRHSTAHLMAQALKRLYPDVKFGVGPAIESGFY
                     YDIDTEAVISDESLVEIEKEMQKIVRENVPIEREVVSREEAIKRFKAIGDQYKLELIE
                     AIPEDETVTIYTQGEFFDLCRGVHVPSTGKIQVFKLLSVAGAYWRGDSNNKMLQRIYG
                     TAFFDKNGLKEFIQMQKEAKERDHRKLGKELDLFANSIEVGQGLPLWLPKGATIRRVI
                     ERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNC
                     PHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQ
                     IKDEFKRVVELILEVYKDFDIKDYSFRLSYRDPKNTEKYFDDDAMWEKAQAMLKSAMD
                     EMEMDYFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLDFLLPERFDLTYIGEDGEK
                     HRPVVIHRGVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNADAHLDYAKGVQDK
                     LQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETM
                     DLDAFIAQVVAEVSKY"
     gene            9445..10029
                     /locus_tag="IBJ56_001477"
     CDS             9445..10029
                     /locus_tag="IBJ56_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HAM3417733.1"
                     /translation="MDVNNVELIISAVRPEQYPETDLPEYALAGRSNVGKSSFINTMI
                     RRKSMARISQKPGKTQTLNFYKIEEALFFVDVPGYGFAKVSKTEREKWGVMIETYITS
                     REQLRGVIQIVDLRHKPTEDDRMMYEFLKYYDIPVIVVATKADKIPRSKWQKNAKIVR
                     ETLDFDPDDKFVLFSSETKMGKDEAWQFIKEGME"
     gene            10157..11464
                     /locus_tag="IBJ56_001478"
     CDS             10157..11464
                     /locus_tag="IBJ56_001478"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HAM3417734.1"
                     /translation="MFILTMGLNHHTAPIDIREKLVFKESEEEMALVTLQQEKSILEN
                     VIISTCNRTEIIAVVDQIHTGRYYLKRFMANWFQMDMEKIEPYLFFHEESDAVNHLYK
                     VTAGLDSLVLGETQILGQVKHAFEIAKQTATTGTLLNKLFREVVTFAKKVHHHTKINE
                     NAVSVSYAAVEVAKKLYGSLDNKKIVLVGAGEMSELALQNLAGSGIADITIINRTKSN
                     AELLANQFQAKVGAYENMNEHLMLADIVLVSTSAAEPIIKQAAMQDLMEQKASSMLVI
                     DIGLPRNVEHDCSYIPNFHLYDIDDLAGVVSANSLERQRIVLELEKTIEAEVRNFFEW
                     EKQLGVVPIIRALREKALDMQEVTMTSLENKLPGLTEREYIQIGKHMKSIINQMLKQP
                     ISELKEMSVEEDATTSIEHFKRIFGLSETDVTVIEKEQAETRS"
     gene            11468..12397
                     /gene="hemC"
                     /locus_tag="IBJ56_001479"
     CDS             11468..12397
                     /gene="hemC"
                     /locus_tag="IBJ56_001479"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HAM3417735.1"
                     /translation="MKRKIIVGSRRSKLALTQSNWVINKLKENYPEFDFEIKEIVTKG
                     DRILDVTLSKVGGKGLFVSEVEQALSDEVIDFAVHSMKDVPSSLKEGLIIGAIPKRES
                     PLDCFVFNRVNSLDELPQGSVIGTSSLRRAAQLLKHRPDFVIKPIRGNIDTRLQKLHA
                     ENFDAIILAKAGLARMGWLENTTLKLEDIPPELCLPAVGQGALAIECRESDQQIRDML
                     TSIHHEETGICVEAERVFLKKLNGGCEIPIAGFATRANEVVHFKGLVGNADGSIILAS
                     EQAGANPSEIGNKVAEDLLSEGADTIIKELRNI"
     gene            12394..>12581
                     /locus_tag="IBJ56_001480"
     CDS             12394..>12581
                     /locus_tag="IBJ56_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HAM3417736.1"
                     /translation="MSKKVVLTREANKNKPWQTYFSQNGFEVTSIPLIKTRPIKMDLS
                     REQQQTDWLFLTSANAVE"
BASE COUNT         4414 a         2087 c         2698 g         3382 t
ORIGIN      
        1 cataaatata cgtttttaaa acaaaccatt taatcccatt cggataagtg gtttgttttt
       61 atgttcctat ggtaaaatag acacaagtga atgacaatat cgaggaggat atccctgtga
      121 ataaattagt attaattgat ggaaatagta ttgcgaatcg cgccttttat gctttaccgc
      181 ttttaaataa tgataaaggt gtttacacaa atgcggtgta tggtttcgca atgatgttga
      241 tgaatgtact cgaaaaagaa aaacctagcc atgtgctcgt tgcatttgat gctggaaaaa
      301 caactttcag gcatacaaca tttaaaggtt ataaaggcgg acgtcaaaaa accccaagtg
      361 agttatctga acagtttcca ttcatccgag aacttttaac ggcgtatgat atcccgcaat
      421 atgaacttgc caattacgag gcagatgata ttatcggaac attgacgaaa aaagcagaag
      481 cagatggaat ggaagtagca atcattaccg gagaccgcga cttaacgcaa ttagcttctg
      541 aaaaaacaac ggtttatatt actaaaaaag gcatagccga tatggaaacc aacacaccag
      601 aaacactaaa agaaaaatac aatctgactc ctgaacaaat cattgatatg aaaggcttaa
      661 tgggtgattc ctccgataat attcctggta ttccaggcgt tggtgaaaaa actgccttaa
      721 aactcttaca tgaatttggt ggaacggtgg aaagtgtgtt agagcatgcc gaggaaattt
      781 ccggtaaaaa actaaaagaa aaagtactgg aaaataaaga attagctatt ttaagtaaag
      841 agttagctac aatcaatgtg gattcaccga ttgaatgcac ggtcgaaagc acgaaatacg
      901 acggctatca aacagaaaaa gttatccctt tattaaaaga aatgaatttt acaacacttt
      961 tgaaaaatat cgagggagat acaccagaag aaacgaaaga actaaaagag ttgtcttttg
     1021 aaatcgtaac agaattaaaa gaaaaacatt ttggtgggaa aaccgcgctt tatgtggagc
     1081 tagaaaacga taattaccat acagctaatt tcattggatt aacagtacat tctagccaag
     1141 ggacgtattt ctttacaaaa gaaacagccg aaagtagtga ggtattccgc aaatgggtag
     1201 aaagtgatca aacaaaagta gtgtacgatg cgaagaaaac aatggttgca atgaaccgca
     1261 ttggtttggc catttctggt atcacctttg atatcatgtt agcatcttac ttgctaaatc
     1321 catctgattc gattgatgac tttacaagtg ttgcaatacg acatgattac acagaagtag
     1381 aaacagatga agcagtctac ggaaaaggtg ctaaacgtag cactcctgaa gaaagcattg
     1441 ttgcggcaca cttagctaga aaagcagtgg ctattgctga cttagagaaa agactagttg
     1501 atgatttaga agaaaatgaa caactagctt tgatggaaga ccttgagcta cctctaactt
     1561 ttgtattagc agaaatggaa atgcaagggg ttagtgtaga tacagaacgt ctagagaata
     1621 tgaaagtgga gctagcgggt agactgaaaa cattggaaga gtcgatccat tctctagccg
     1681 gcgaagaatt caatattaat tcaccgaaac aactaggtgt gattttattt gaaaagcttg
     1741 gtctcccagc tgtcaagaaa acaaaaacag gttattcaac ggctgccgat gtactggaaa
     1801 gtttatctgg taaacacgcg attattgatg aaattttgtt atatcgtcaa cttggtaaaa
     1861 ttcagtccac ttatatcgaa gggctgctta aagtgacaga taaagaaaca cataaagtac
     1921 acacacgttt caaccaaaca ttaacgcaaa caggacgctt aagttcagtt gatccgaact
     1981 tgcaaaatat ccctattcgt ttagaagaag gacggaaaat tagacaagtt ttcgtaccga
     2041 gtaaaccagg ttggaaaatg ttttcagccg attattctca agtagagctg agagtcttag
     2101 cacatatttc ggaagatgaa aatttaattt atgcatttaa gcacgattat gatattcata
     2161 cgaaaacggc gatggacgtg tttcatgttg agcaagacga agtggattca ttaatgcgtc
     2221 gtcaggctaa agcggtaaac tttggtattg tatatggaat tagtgattat gggctttcgc
     2281 aaaaccttgg tattacgcgt aaagaagcaa aagactttat tgatcgttat tttgtgagct
     2341 atccagctgt gaaagaatat atgcaagata tcgttcgttt tgcgaaagaa aaaggctatg
     2401 tagagaccat tttacatcgt cgtcggtata ttccagagat tgtcagtcgt aattttaatg
     2461 ttcgcggatt tgcagaaaga acggcgatga acacgcctat tcaaggtagt gccgctgata
     2521 ttatcaaaaa agcgatgatt ctgatgagcg agcgtttagt atctgaaaaa ttagaagcaa
     2581 aattattact acaagtacac gatgaattaa tcttcgaggc gcctgaagct gaaatcgcta
     2641 aattagaaga aattgtccca gatgttatgg aaaatgcagt agagctttct gtaccgctaa
     2701 aagtagatag cgcatttggt gacacttggt acgacgcgaa ataaatagag aaacggggag
     2761 tttatatatg ccagaaatgc cggaagtaga aaatgtccgc gcaactttac aagaattagt
     2821 cccaggtaaa aaaatagatc aagtaattgt tcgtgttcca aaaatgattg tatcaacacc
     2881 acccgatgag tttgtgcata tgcttgtcgg gcaagaaata gagggtgtac gccgtcgtgg
     2941 taaattctta ctttttgact taaccaactg tacgatttta tcgcatttac gaatggaagg
     3001 taaatttcgg ttaatggatg aaaaggaaga ggttagcaag catacgcata ttatttttca
     3061 ttttgaagat cacacggaat tgcgtttttt agatgtgcga aaatttggca cgatggaagt
     3121 aacaaataaa tacggtgagg gtgaaacgcg gtcgattaaa aagcttggcc cagaaccgct
     3181 gacgcaagcc tttacattaa cggattttgc gactggtgta aaaaaaacaa gccgcgccat
     3241 caaaacggct ttacttgatc aaaagttagt agccggagta ggaaatattt atgcggatga
     3301 aatttgtttt gaagcaaaag tgcgcccgga aagagcagct aactcacttt cagacaaaga
     3361 aatcaaacgt atttttgaag cgacgaaaag tattatgact gaagctgtag cacttggtgg
     3421 ctccactgtc agaacatatg taaattcgca agggaagctt ggacaatatc aagataaatt
     3481 aaaagtatac ggcaaaacag acgaaccgtg tgttgtttgt ggaacgccaa ttgaaaaaat
     3541 taaattaaac ggacgcggga cacatttttg cccgaattgc caaaaataga aagcgagctg
     3601 aaatcatggg gaaaacgatt ggattaacag gaagtgtagc aacagggaaa tcaacagtga
     3661 gtaacatgat tcagcaagcg ggtattccat tagtagatgc agatattgct gctagaaaag
     3721 tagtggagcg tggcacagaa ggactaaaag aaatcgttgc ttattttggg gaagaaattt
     3781 tacttgcaga tggcacatta aatcgagcta aattaggaga aattattttt aaagataagg
     3841 aaaagcgtga aaagttaaat gaaattacgc atccacgtgt gaaagactat atgttggaag
     3901 cgcgcgaacg tttttttgaa gcaggagagg agcttgtctt tttcgatatt ccgcttttgt
     3961 ttgaaagtca tttagaatcg ttggtggata aaatagttgt tgtttggacc acccctgaaa
     4021 cagagttaaa acgcctgatg gagcgaaata atctaacaaa agaagatgca ttaagaagaa
     4081 ttgaaagcca aatgggaatc gatgaaaagg cgagaaaagc tgattttgtc atcgataata
     4141 atgaatcact tgaaaagaca caaaaacaag ttcttacatt tatcaagcgt tttgtaaaga
     4201 acaaatagcc acccttactt tcacatggta taatgaggca tacaaataaa cagatagaga
     4261 aagctagaga taggagtgag tttttgtgag atgtcctact tgtcaatata atggtacacg
     4321 tgttgtagac tcaagaccgg cagatgatgg caattccatc cgaagacggc gtgaatgtga
     4381 aaaatgcgga tttcgtttta ctacttttga aaaggtagaa gagagtcctt taatagttgt
     4441 gaaaaaagat ggagcaagag aagaattcgc tcgtgaaaaa gtgcgacgcg gcttaataag
     4501 agcatgtgaa aaacgaccag ttagcgctga acaaattgaa gaaattgtca atgaggtaga
     4561 acgtgaactg cgaaatattg gagacagtga aatcgcgtct gacttaattg gtgaaaaagt
     4621 gatgaataaa ttagcgaatc tcgatgaagt agcctacgtg cgcttcgctt cggtgtatcg
     4681 ccaatttaaa gatattagtg tgtttgtcga agagttaaaa gatttaatgg aaaaaaataa
     4741 agataggtga gtaaattgac ggaattttgg atggagcttc aagcggtaga cagctatcaa
     4801 gtaaaagcaa gtggaatctt gaccggcgcc gacagaaaaa ttattacgat gttatatcaa
     4861 ccgctaatgg gggcggaatg tcttgcttta tatcaaacac tgttcacaga agtcgaagaa
     4921 aacagacttt ggtcagaagc gcattcgcac gtccaacttt taaatatgct tgatattagt
     4981 ttgaaagcgt tattcgaggc aaggctaaaa ttagaaggct taggtctttt aaagagttat
     5041 gtgaagaccg aaaacgatca acgcttttat atttacgaaa tcttgccacc gttatcacca
     5101 gaaaagtttt tttcggatgg tctattaaat atttatttat atagcaaaat tggcaatgcg
     5161 cagtttcaac gtttgcgtcg ttttttcgca gacgaggcat ttgacacagc tacatatagc
     5221 gaaatcactc gttcgtttca agatgttttc gaaccgttta aaggtggtag tagtgcagtt
     5281 acgactgaaa ctagtcaaaa gttactagac aaagtgacgc caaaagaaat tgaatttgat
     5341 gacgcgagtt ttgactttaa tttgtttttg agcttgcttt caccgggaat gattgctcgc
     5401 gaaaagataa caaaagaagt acgccaaacg atattaaaac ttcacgggat ttatcaagtt
     5461 tctgaaaaag atatgccgag ttatttgtat cgtgcgcttg atgcaaatgg tgaaatcgac
     5521 atcgtttatt tgcgtaaaat cgttcgtgaa ggctacacca tcgaacacgg tgcgccgcca
     5581 aaactgcaaa tgaagcagga aacgcctgtc gataaagaac cagaagaatc gttaaatgat
     5641 gaagaagcgc tgcaagtata tttagaaagc atcacgcctt ttcaactttt ggtagacatt
     5701 tcagacgggg cagttcccgc tgaaaccgat ttgcgcgttg tagaagaagt catgaaccag
     5761 caaaatttac cagttcctgt gatgaatgtg ctgattgagt acgtgttact ccggcttgac
     5821 cggaagcttt ctaaaaatta catgatgacg atcgctgctc actggaaacg aaaaaatgta
     5881 aaaacagcaa aagaagcaat ggatctagcg tggcaagagc acgagaaata caaacgactt
     5941 caagaagaac cagccacacc aaaaacgaat aattacaacc gaaattatca aaaaacaacg
     6001 cgaaaagaaa ttttgccgga ttggtttgat aaggagcaag ttgctccagc cgaaaataaa
     6061 atgacagata aagaaaaaca aacactcgaa gaacaagttc gtgaaattaa agaacgacta
     6121 aataaaaggt aggtgaagaa gatggataac atcgaaagaa cattaggaca gctttttgaa
     6181 ggccgcgact ttgaaaaaga ataccaaggt ttaaaacaac aagttctcca ttatcaacca
     6241 attcaagact ttttcaaaga gcacaaagaa gaggttaccg agcaattagt taatcaaaat
     6301 ttgtctaatt tatatgaatt tatgacgcaa cacaaaaaat tcacggaaca ggaagaaact
     6361 ttaatgcctg gttatgcacc aaaacttgtt cttaatgggg aattcatcac tgtcacctac
     6421 tatccgacga aagagaaaat agaagaagat aaacgccgtg cagttgagcg aagaattcgt
     6481 tctctttata tgcctaagca agtagtggac gcgaacttag cggactttta cacggatgaa
     6541 gaatcgcgtc aattggcact tgtggaagcg tatcaattct taaataatta ccctccaaaa
     6601 agtggcgagc gtgtcaaagg cttatttatt catggtagct ttggaaccgg aaaatcctac
     6661 ttacttggag cccttgcaaa agagctagct ttgaaaggaa tctcatcaac acttgtttat
     6721 ttacccgagt tcatgcgcga agtgaaacag tctatttctg acaatacagt cggtgaaaaa
     6781 attcaatttg cgaaagaaac agaagtattg atgctcgatg atattggcgc agaatcgatg
     6841 accgcttgga cgcgtgatga agtgttgggt gcgattttac aattccggat gcaagaggaa
     6901 ttaccaactt tcttctcatc aaattacaac atggatcaac tagaaaatca tttaatgttt
     6961 gcccaaaatg gtacggaaga aaaactaaaa gctcgccgaa tcatggaacg ggtgcgctat
     7021 ttgtcgaaag aggttaactt agaagggaaa aatcgccgtt tctaaaaagt acttgcaaat
     7081 atgtttaatc gggcttataa tttgaagtaa tataaaacaa agtgatgaaa aggacaacca
     7141 atttaacgga aaattttaga gaggaagggc tagctgggaa ccttctattg gaacttaaat
     7201 ttggaccacc ttggaacttc tattaggaac gtgtttaact agtaataata gacggatcgc
     7261 tccgttataa gcgacaagag tgaagtagtt atttttagct atttctgaat cttgggtgga
     7321 accacgagca taaactcgtc ccttgacaac aggagggatg ggttttttat tttgccctcc
     7381 taaccacact aaaaaaagaa aaggagagat tagtatgaaa atcacatttc cagacggtgc
     7441 agtaaaagaa ttcgagccag gcgtttcaac agcagatatt gctgcttcta tcagcccagg
     7501 gctaaaaaag aaagcactcg caggtaaatt aaacggggag ttacttgatt tagtaacacc
     7561 aatccacgaa gacggagcaa tcgaaatcgt aacaccagac catgaagatg cgcttggtat
     7621 tttgcgtcac agtacagctc atttaatggc tcaagcattg aaacgccttt atccagatgt
     7681 gaaatttggt gttggcccag cgattgaatc tggtttctat tatgatattg atacagaggc
     7741 agttattagc gatgaatctc ttgttgaaat tgaaaaagaa atgcaaaaaa ttgtgcgtga
     7801 aaatgttcca attgagcgcg aagttgtttc tcgcgaagaa gcaattaaac gtttcaaagc
     7861 aattggagat caatataaat tagaacttat cgaagcaatc ccagaagatg aaacagtgac
     7921 aatttataca caaggtgaat ttttcgacct ttgtcgcgga gtccatgttc cttctactgg
     7981 taaaattcaa gtgttcaaac tacttagcgt ggctggtgca tactggcgtg gcgatagtaa
     8041 caacaaaatg ctacaacgca tttatggcac agctttcttc gataaaaatg gcttaaaaga
     8101 atttatccaa atgcaaaaag aagcgaaaga acgtgatcat cgtaaactag gtaaagaact
     8161 agatttattt gcaaatagta ttgaagttgg tcaaggttta ccactttggt tgccaaaagg
     8221 tgcgactatc cgacgcgtta tcgaacgata cattgtggat aaagaagaac gccttggtta
     8281 caatcacgtt tacactccga ttatggctaa tgttgagctt tataaaacaa gcggccactg
     8341 ggatcattac catgaagaca tgttcccaac aatgaaaatg gacaacgaag aactagtttt
     8401 acgtccaatg aactgcccgc atcacatgat gatttataaa aatgatatcc atagttaccg
     8461 tgaactacca atccgtattg ccgagcttgg tatgatgcac cgttatgaaa tgagtggggc
     8521 gctttcagga cttcaacgtg ttcgtggaat gactttaaat gatgcacacg tatttgttcg
     8581 ccctgaccaa atcaaagatg agttcaaacg ggttgtagag ctaattttag aagtatataa
     8641 agactttgat attaaagatt actccttccg cctaagctac cgtgatccga aaaatactga
     8701 aaaatatttt gacgatgatg ctatgtggga aaaagcgcaa gccatgctta aatccgccat
     8761 ggacgaaatg gaaatggatt actttgaagc agaaggtgaa gctgcatttt acggtccaaa
     8821 actagatgtt caagtgaaaa ctgcaatagg aaaagaagaa acactttcca ctgtacaact
     8881 tgacttctta cttccagaac gctttgactt aacttacatt ggcgaagatg gcgaaaaaca
     8941 tcgtccagtt gtcattcacc gtggagttgt atcgacaatg gaacgttttg tcgcatatct
     9001 aatcgaagaa tacaaaggtg ctttcccaac ttggttagct ccagtacaaa tggaacttat
     9061 tccagttaat gcagatgcac atttagatta tgcaaaaggt gtacaagata aattacaacg
     9121 cgctggactt cgtgctgaag tggatgatcg taatgaaaaa ttaggatata aaatccgtga
     9181 agcacaaaca aagaaaattc cttatgcctt agtattaggt gaccaagaag tagaggctgg
     9241 ttctgttaac gttcgtcgtt acggctctaa agactctgaa acaatggatt tagatgcatt
     9301 tatcgcacaa gttgttgctg aagtaagcaa atattaatca cgaaaatact gtctcttaaa
     9361 gggggcagta ttttttcatg gtgctttttt cctctttttc cgttatacta gtaaaagata
     9421 atgaatagaa caggatggaa aattatggat gtaaataatg tagaactaat aataagcgct
     9481 gttcgaccag agcaatatcc cgagacagac cttccagaat atgcacttgc aggtcgatca
     9541 aacgttggaa aatcatcttt tattaatacg atgattcgcc gcaaaagtat ggcaagaatt
     9601 tcacaaaaac caggaaaaac acaaacacta aatttttata aaattgaaga agcacttttc
     9661 tttgtcgatg tacccggtta tggtttcgct aaagtttcga aaacagaacg cgaaaaatgg
     9721 ggcgtgatga ttgaaacgta tattacttct cgtgagcaac ttcgtggtgt tatccaaatt
     9781 gtagatttgc gccataaacc tacagaagat gaccgaatga tgtatgaatt tctgaagtat
     9841 tacgacatcc ctgttatcgt cgtagcaacg aaagcagaca aaataccacg cagtaaatgg
     9901 caaaaaaatg ctaaaattgt gcgagaaaca cttgattttg atcctgatga caaatttgtc
     9961 ttattttcct ctgaaacaaa aatgggaaaa gacgaagcat ggcagtttat caaagaagga
    10021 atggaataat agaaggagtt ggaatgaaaa atccagctct tttttccgtc taaatacata
    10081 aacggactat ttggtgtaca catcgaaaag tggtagaatg tattagagtt caatttaatt
    10141 ttaggaggat tatcgaatgt ttattctcac catggggctg aatcatcaca cagcaccaat
    10201 cgacatccgc gaaaaattag tttttaaaga aagcgaagaa gaaatggcct tagtaacatt
    10261 acagcaggaa aaaagtatcc tcgaaaatgt tattatttca acgtgcaatc gaacagaaat
    10321 tattgcggtt gttgaccaaa tacatacagg tagatattac ttaaaacgct ttatggctaa
    10381 ctggtttcaa atggatatgg aaaaaatcga accttatttg tttttccatg aagaatcaga
    10441 tgctgtcaat catttatata aagtaaccgc gggacttgat tcgttagtac tgggagaaac
    10501 gcaaatcctc ggacaagtaa aacatgcatt cgaaatcgcc aaacaaacgg ctacaacagg
    10561 tacactttta aataaacttt ttcgggaagt agttactttc gcaaaaaaag tacaccacca
    10621 tacaaaaatt aatgaaaatg ctgtgtctgt cagttatgcc gctgtagagg ttgcaaaaaa
    10681 attatatggt tcattagaca ataagaaaat tgtgctagtt ggtgcagggg aaatgagtga
    10741 actcgctttg caaaatctcg ctgggagcgg cattgcagat ataaccatca tcaaccgtac
    10801 taaatctaat gcagaattat tagcaaatca atttcaagca aaagtgggcg catatgaaaa
    10861 tatgaatgaa catttgatgc tagcagacat cgttctcgtt tcgacaagtg cggcagaacc
    10921 tattattaaa caagctgcta tgcaagattt gatggaacaa aaagcgagtt cgatgcttgt
    10981 aattgatatc ggtttacctc gaaatgttga acatgattgt tcatacattc ccaatttcca
    11041 tttatatgac attgacgatt tggcaggggt cgttagcgcg aactcattag agcggcagcg
    11101 aatcgttctg gaacttgaaa aaactattga ggcagaagtt cgtaactttt tcgagtggga
    11161 aaagcaacta ggcgtcgtcc ctattattcg tgctttgcgt gaaaaagcgt tagatatgca
    11221 agaagttact atgactagtt tagaaaataa acttcctgga ctaacagaac gcgaatacat
    11281 tcaaattgga aaacatatga aaagcattat aaaccaaatg ctgaaacaac ctatctcaga
    11341 attaaaagaa atgtctgtag aagaagatgc aactacaagt attgaacatt ttaaacgtat
    11401 ttttgggttg agtgaaacag atgttactgt aatagaaaaa gaacaagccg aaacgaggag
    11461 ttaacggatg aaacgaaaaa taattgttgg ttctagacga agcaagttag ctttaactca
    11521 gtctaattgg gtgattaaca agctcaaaga aaattatcct gagttcgatt ttgagataaa
    11581 agaaattgtt acaaaagggg accgtatttt agatgtaaca cttagcaaag taggcggaaa
    11641 aggtctattt gtatccgaag tggagcaggc tttaagtgat gaagtgattg attttgcggt
    11701 acatagcatg aaagatgttc catcaagttt gaaagaagga ttaattattg gcgcgattcc
    11761 aaaacgtgaa tcgccattag attgcttcgt tttcaatcga gtgaattctc tagatgagtt
    11821 accacaaggc tcggtcattg gtacaagtag cctccgtaga gcggcacaac ttctaaaaca
    11881 tcgacctgat tttgtgatta aaccaattcg aggcaatatc gatacacgtc ttcaaaaatt
    11941 acatgcagaa aattttgatg caattatctt agcaaaagct gggttagctc gtatgggttg
    12001 gttagaaaat actacgttaa aactagaaga catcccacca gaattatgtt tgccagctgt
    12061 tggacaaggt gcacttgcta tcgagtgtcg cgaaagtgat caacaaatcc gcgatatgtt
    12121 aacttctatt catcacgaag aaactggaat ttgtgtagaa gcagaacgtg ttttcttgaa
    12181 aaaattaaat ggtggctgtg aaattccgat tgccggcttt gctacaagag ctaatgaagt
    12241 cgttcatttt aaaggtttag ttggtaatgc ggatggttcc atcattcttg catccgaaca
    12301 agctggtgca aatccaagtg aaattggaaa taaagtagca gaagatttgc taagtgaagg
    12361 tgcagatact attatcaaag aactgagaaa tatatgagta aaaaagttgt tttaacaaga
    12421 gaagcgaata aaaacaaacc atggcaaacc tatttttcgc aaaatggttt tgaagtgacg
    12481 tcaatcccgc tgattaaaac acgacctata aaaatggatt tgagtcgaga acaacaacaa
    12541 acagactggc tttttttaac aagtgcaaat gctgtagaat a
//
LOCUS       DABQVC010000077        12569 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.077,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000077 DABQVC010000000
VERSION     DABQVC010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12569
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.077"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            70..1365
                     /locus_tag="IBJ56_001481"
     CDS             70..1365
                     /locus_tag="IBJ56_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAM3417737.1"
                     /translation="MDKFFKLRENKTTVRTEILAGLTTFLSMAYVLFVNPSMLATTGM
                     ELKAVFVATILASVVGSLAMGLIANYPIGLAPGMGLNAFFAYTVCAQWGIPWQTALAG
                     VLVSGLVFICLTISGLREKIVNAIPTELKFAVGAGIGFFIAFLGLKNAGIIVPNESTI
                     VALGDLHSGPVLLAVFGIVVTVAYMTIGWKGAIFFGMATTAVAGMLFGLIDVPTQVVS
                     SVPSMESTFGQAIIHLPDIFTPQMLIVILTFFFIDFFDTAGTLVAVATQAGFVKDNKI
                     PRAGRSLFSDSLATVFGAIFGTSTTTSYVESTAGVAVGGRTGLTAVVIAICFSLSLFF
                     SPLLGVITSAVTTPALVIVGILMIGNVAHIDWTKFEVAVPSFFVILMMVLTFSIATGI
                     AIGFIFYPITMVLKGRYKEVHPIMYVMMVLFILYFMFVV"
     gene            complement(1408..2439)
                     /locus_tag="IBJ56_001482"
     CDS             complement(1408..2439)
                     /locus_tag="IBJ56_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HAM3417738.1"
                     /translation="MPDFSYAKITKLVVHFAGNKAREEGTEVSANVLADIGSEMNQTL
                     ASIFLEPFNKDEYYQFTHETDLDFNEVRTFAANMFVAEDEFLDESKKILEHLYSETTH
                     PNIKSGDVWIFFIEGCVVDGDFTNGIGIFKVENKEVFLKNDFNGREFQIGYDKGITGT
                     DLDKGCLVFNVNHDTGNKVLILDRLNRGDSVYWKDKFLSIDKITDEKFYTEGFVEVCT
                     DYIKQREESLLDKSNFVKATSEYLAGEETLNIAEFARTTIEKPEEITEFNTMVDTFER
                     ENNVRFPETFQLDEEKREKLSKKIRKTIKLGKNISVVVKDLEQLEETDFVQGYDEEKG
                     KNYMIVYYD"
     gene            2516..2812
                     /locus_tag="IBJ56_001483"
     CDS             2516..2812
                     /locus_tag="IBJ56_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HAM3417739.1"
                     /translation="MIPADFEDRVYTVVRQIPRGKVTTYGQIAYMIGFPKNARLVGAT
                     LKHSKRDQITPCHRVINAAGRLVPGWEEQRELLLSEGVTFKENGHVKMKDHFWQ"
     gene            complement(2797..3624)
                     /gene="hisJ"
                     /locus_tag="IBJ56_001484"
     CDS             complement(2797..3624)
                     /gene="hisJ"
                     /locus_tag="IBJ56_001484"
                     /EC_number="3.1.3.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphatase HisJ"
                     /protein_id="HAM3417740.1"
                     /translation="MKRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLS
                     SEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLLIHIGFEVDYLIGYED
                     FTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYL
                     EGVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRD
                     YELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIGRGYSTYCQK"
     gene            3776..4954
                     /locus_tag="IBJ56_001485"
     CDS             3776..4954
                     /locus_tag="IBJ56_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HAM3417741.1"
                     /translation="MNLNKNLPTGTRDKLFREAQAAYKIEQQVNHYFEKRGFKRIETP
                     VIEFEDVFSSEHQADAKLYRFFDEKGRLTVLRPDMTLPIGRVVSTTGVMLPLKLSYSG
                     KIFRANEDFGGEQNEQTQAGIEIIGYPSIKAEIECILSGIGVLNALEIPNFQIELGHA
                     AIYRRVIQLLNLSETAEIDFRQLIQNKSLTGIKRFVANNPSTLDDFILAIPRLFGPAT
                     AILNQAKSLTTDKGILTALREMETIVEAVSYTADISVDLGLVQDFHYYTGIIFRGYAD
                     LAADNFLSGGRYDHLLEQFTSSSSPAVGLALNLDSLTTLQNRAGIIKKQTPTTLLIHY
                     DLEALPQAEKFMQETPNSELSFFETASNAISFAKKWHIPEVVHVSSQGIQTIFQREVD
                     "
     gene            4954..5595
                     /locus_tag="IBJ56_001486"
     CDS             4954..5595
                     /locus_tag="IBJ56_001486"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HAM3417742.1"
                     /translation="MKALKIALTKGRLEKDAVALLEKAGIDCSSMTDKKRKLIFHSST
                     QPISFILVKAVDVMTYVKHGVADIGIVGKDVLMEASKSHYEMLDLEIGKCQFCLASTP
                     DFDPSSYRRKIIATKYPTVASKFFREKGEDVEIIKIEGSVEIAPVLGLADAIIDIVET
                     GSTLKENGLLIYEKMYPISARLIVNKASLKQNKTQIFQLIDQLEQVIKEERAE"
     gene            5592..6875
                     /gene="hisD"
                     /locus_tag="IBJ56_001487"
     CDS             5592..6875
                     /gene="hisD"
                     /locus_tag="IBJ56_001487"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HAM3417743.1"
                     /translation="MKILTGTVNELLNELKIETDTNTSIQVETEVKTIIEKVKTAGDQ
                     ALFDFTSKFDGVGLTELRVPAADIQAASAKIEPAFLDALQQAKVNIESFHSKQKQHAF
                     LDSEKDGVIRGQLIRPLETVGVYVPGGTAAYPSSVLMNVLPAKIAGVKRIVMITPPGE
                     NGINPYVLASAQLAGVDEIYQVGGAHGIAALAHGTESIPKVDKIVGPGNIYVATAKRE
                     VFGLVDIDMIAGPSEIVVLADENANPAFIAADLLSQAEHDILARAILITTSKKIAEET
                     QNEIDKQLENLPRKAIAQKSIETRGKIIIAATTQEMFDIMNEIAPEHLEVQLENPMNY
                     LYQIKNAGSIFLGSYASEPLGDYFAGPNHVLPTSGTAKFFSPLGVEDFTKRSAFISYT
                     KEALAKEKDAIVLLAKKEGLDAHAKAIQIRFEEEN"
     gene            6876..7460
                     /gene="hisB"
                     /locus_tag="IBJ56_001488"
     CDS             6876..7460
                     /gene="hisB"
                     /locus_tag="IBJ56_001488"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HAM3417744.1"
                     /translation="MRTATKTRITAETSIELSINLDSQAESIISTGVGFLDHMLTLFA
                     KHSRITLNVKADGDTYIDAHHTVEDIGITLGLCLKEALADKASINRYGSAYVPMDESL
                     GFCALDLSSRSYLVFDAELTNPKLGDFDTELVEEFFQAVAFNTEMNLHLRVLYGKNTH
                     HKIEALFKAFGRALREAITINPEIKGVNSTKGVL"
     gene            7461..8087
                     /gene="hisH"
                     /locus_tag="IBJ56_001489"
     CDS             7461..8087
                     /gene="hisH"
                     /locus_tag="IBJ56_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HAM3417745.1"
                     /translation="MIVIIDYDTGNTKSISKALDFIGLQNKISSDKTEIAQADGVILP
                     GVGAYPEAMQELTRRGLDKTLKEIATAGKPILGVCLGMQLLLESSNEHSYTKGLGLIP
                     GHVEMLPDESEFAVPHMGWNQLQIKRTTPLTQNIAGEYVYYVHSYYANCPEAYIIATS
                     GYSIDIPGMINNGNIYGAQFHPEKSGQIGLEILKGFKEVIRSCKSSQQ"
     gene            8066..8788
                     /gene="hisA"
                     /locus_tag="IBJ56_001490"
     CDS             8066..8788
                     /gene="hisA"
                     /locus_tag="IBJ56_001490"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HAM3417746.1"
                     /translation="MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGA
                     TYLHIVDLDGALEGRPINLEIIQRMKKAAKIPVQVGGGIRSMAQVDYYLESGIDRVII
                     GSAALTDPDFLRAAVQKYGAKIVAGIDAKNGFVATRGWLDVSQVSYLDLAKRMEKVGV
                     ETIIYTDISRDGTLTGPNLEQMANLKEHVKVSLIASGGVSSRADLEALAQLGLYGAIA
                     GKALYNHDISMSDIVEVEQIAY"
     gene            8778..9533
                     /gene="hisF"
                     /locus_tag="IBJ56_001491"
     CDS             8778..9533
                     /gene="hisF"
                     /locus_tag="IBJ56_001491"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HAM3417747.1"
                     /translation="MLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGA
                     DELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISL
                     NSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKA
                     VQLGAGEILLTSMDGDGTKNGYDIPLTKAISAAVSVPVIASGGCGNAAHMAEVFEKTK
                     ATAALAASIFHYGELSIKNVKTTLLEKGVNIRP"
     gene            9530..9847
                     /gene="hisI"
                     /locus_tag="IBJ56_001492"
     CDS             9530..9847
                     /gene="hisI"
                     /locus_tag="IBJ56_001492"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HAM3417748.1"
                     /translation="MTSVDFSKGLVPTIILDDQNGDVLMLAYMNEESYQKTLETGYTW
                     FFSRSRNELWNKGATSGHTQKVKQIWTDCDNDTLLIRVTQIGPACHTGKKSCFFNLIK
                     EDF"
     gene            9848..10159
                     /gene="hisE"
                     /locus_tag="IBJ56_001493"
     CDS             9848..10159
                     /gene="hisE"
                     /locus_tag="IBJ56_001493"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HAM3417749.1"
                     /translation="MLNDLYEEIKLRKTQPREGSYTNYLFDKGLDKILKKVGEEATEV
                     VIAAKNNEQELIAEVSDLTYHLLVLLAEQNIPLSKIQAELQNREGKLSTTRDRKEIND
                     L"
     gene            10652..12028
                     /gene="gdhA"
                     /locus_tag="IBJ56_001494"
     CDS             10652..12028
                     /gene="gdhA"
                     /locus_tag="IBJ56_001494"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HAM3417750.1"
                     /translation="MAQTSTIQNDTKAAEEYAARVFETIKLRNPGETEFHQAVEEFLN
                     SVIPALAKEPKYEANGILEQLTEPERLISFRVPWVDDSGTVHVNRGYRVQFNSAIGPY
                     KGGLRFHPSVTGSIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDSEVMRFCQS
                     FMTELQKHIGPDTDVPAGDIGVGGREIGYLFGQYKRLRGAYDAGTITGKGLSYGGSLA
                     RTEATGYGLVYFTVEMLEAAGETIRGKKIVVSGSGNVAIYAIEKAHELGAKVVACSDS
                     AGFVYDKEGIKVETVKQLKEVERKRISEYTTIHPSAEYYAGGDVWSVPCDIALPCATQ
                     NEINADQARALVKNGVIAVAEGANMPSTLDAVDIYHENKVLFGPAKAANAGGVAVSAL
                     EMAQNSTRMSWTFQTVDEHLQNIMKDIYKNSSNAASEYGAPGNLVIGANIAGFLKVAD
                     TMISQGII"
     gene            complement(12071..>12569)
                     /locus_tag="IBJ56_001495"
     CDS             complement(12071..>12569)
                     /locus_tag="IBJ56_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HAM3417751.1"
                     /translation="EEMDTDRRTINDKLKIKTTKKNLLSLSDLETGIVYFVSASKQNA
                     ALLEQMKAHLIYRELNEVEKEQFEDALIEARQLVEMTGLSSQILQQLSGTYNNILNNN
                     LNDTMKILTALSILLTVPTIITGFFGMNMPLPLEHNTFGWIVTIFISVILWFGLSFIL
                     RKLMR"
BASE COUNT         3859 a         2704 c         2347 g         3659 t
ORIGIN      
        1 ttattattcc cttttttacc taggctcttt ccgttatgtg cgacaacata aatagggagg
       61 ctttttttaa tggataaatt tttcaaacta cgcgagaaca agacgactgt tcgaacagaa
      121 atactcgcgg ggctaacgac tttcttatcg atggcttatg tacttttcgt caacccatct
      181 atgcttgcaa caactggaat ggaattaaaa gctgtttttg tggcgacgat tcttgcttct
      241 gttgtaggat cgcttgcaat gggactaatc gctaattacc cgattggact tgcaccaggt
      301 atgggactaa atgcgttttt cgcttatacc gtttgtgcgc agtggggaat tccttggcaa
      361 acggcgctgg ctggtgttct cgtttctggc ttagtgttca tttgtttaac tatttctgga
      421 cttcgcgaaa aaatcgttaa tgcaatccca acggaactaa aattcgcagt gggagcaggt
      481 attggttttt ttatcgcctt tttagggctt aaaaatgctg gaattattgt gccaaatgaa
      541 tctactattg tagcgcttgg tgacttacat tctggcccag tgttactggc tgttttcggg
      601 attgttgtta ctgttgctta catgacaatt ggttggaaag gtgcgatttt ctttggaatg
      661 gcaacaaccg ctgttgctgg aatgttgttt ggactgattg atgtgccgac tcaagttgtt
      721 tcatctgtac caagtatgga gtcaacgttt ggtcaagcaa ttattcactt accagatatt
      781 tttacaccac aaatgctcat tgttattttg acatttttct tcattgattt ttttgatact
      841 gccgggacac ttgttgcggt tgcgactcaa gctggatttg taaaagataa caaaattccg
      901 cgcgcaggtc gttcgctatt ctcggattca cttgcaacag tatttggagc gattttcggg
      961 acttcaacaa cgacttctta tgtagaatct actgctgggg ttgctgttgg tggtcggaca
     1021 ggtttaactg ccgttgttat cgcaatctgt ttctcactgt cactattctt ctcgccgctt
     1081 cttggcgtaa ttacaagtgc ggttacgact ccagcgcttg tcattgttgg gattttaatg
     1141 attggaaatg tcgctcatat tgattggact aaattcgaag tagctgttcc gtcctttttc
     1201 gttattttaa tgatggtact gactttctct atcgctactg gtatcgcaat tggtttcatt
     1261 ttctatccaa tcaccatggt acttaaagga cgctacaaag aagtgcatcc gattatgtac
     1321 gtgatgatgg tactgtttat actgtacttt atgttcgtcg tttagacagc aaaaaaaccg
     1381 gggattccgc atcctcggtt ttttcgttta atcataatac acaatcatat agtttttccc
     1441 tttttcctcg tcgtatcctt gtacaaaatc agtttcttcc agctgttcta aatctttcac
     1501 aacaaccgaa atatttttgc caagcttaat cgttttacgt atttttttcg atagtttttc
     1561 gcgcttttct tcatctaatt ggaatgtttc tggaaaacgg acattgtttt ctcgttcgaa
     1621 cgtatccacc attgtattga attcagtaat ctcttccggt ttttcaattg tcgtgcgagc
     1681 aaattcagca atattcaacg tctcttctcc tgctaaatat tccgatgtcg cttttacaaa
     1741 attagattta tcaagcagtg attcctcgcg ttgtttaata taatccgtac aaacttccac
     1801 aaaaccttcc gtgtaaaatt tctcatcggt tatcttatca atactcaaaa acttatcttt
     1861 ccaataaacc gaatcgccac ggttaagccg gtctaaaatc aacactttat ttcccgtgtc
     1921 atgattcaca ttgaaaacca agcaaccttt atctaaatcc gtcccggtaa tccctttatc
     1981 atagccaatt tggaattctc tgccattgaa atcattttta agaaaaactt ctttgttttc
     2041 gactttaaaa atcccgattc cgttcgtgaa atcaccatcg acaacgcagc cctcaataaa
     2101 gaaaatccaa acatcgccac ttttaatatt cgggtgggtt gtttcgctat ataaatgctc
     2161 taaaatcttc ttggattcat ccagaaactc gtcctccgcg acaaacatat tcgcagcaaa
     2221 agtacgaact tcattaaaat ccaaatctgt ttcatgcgta aattgataat attcatcttt
     2281 attaaatggc tctaagaaaa tcgaagctag tgtttgattc atttccgagc caatgtcagc
     2341 gagcacattc gctgatactt ctgttccttc ttctctcgct ttatttccag caaaatggac
     2401 cacgagttta gtaatttttg cgtatgaaaa atctggcatt cctttatcat cctaactttt
     2461 ataaaatagg tatttcctgt atactaaatt tattatgaac aaatggaggt acgtaatgat
     2521 tccagcagat tttgaagacc gtgtttatac agtcgtgcgc caaataccgc gcggtaaagt
     2581 gactacatat ggccaaatcg cctatatgat tggctttcct aaaaacgcca gactcgtagg
     2641 tgctacgcta aaacattcga agcgtgacca aattacgcct tgccatcgtg tcatcaatgc
     2701 agctggtcga cttgtccccg gttgggaaga gcaacgcgaa ctccttttat cagaaggtgt
     2761 gacatttaaa gagaatggac acgtcaaaat gaaagatcat ttttggcaat aagtgctata
     2821 tccacgtcct atatcttgaa caccgtgcga gtccgaccca tagacaaacg gaatctgtaa
     2881 ctcgctagct aatgtcacta ttttctttgg tgggtatgtc tctccgcaaa ggggcttaaa
     2941 tagtcccgcc gtattaaaat caagttcata gtctcgtttt ttcactaaag caagaatcac
     3001 ccgaaatttc tccattactt cctcagaaaa atcgcttgta tcctccccaa agaattgctg
     3061 aaacttctga cacaatgaaa tatgccccat tctccgcggt ttaaaaagtc ctaaatccgc
     3121 ttcaattgac tgttttacac cttctaaata agcaagttgc gcttgttcaa acccgccata
     3181 aaattgtaca attccttcat tataatcctc cgctgaaaaa tcaatcgaac gaaaaccacc
     3241 ttgcccctct aaaaaatgca gcgacaacac accatcatcc gtttgtggtc catactcatt
     3301 caaaaaatcc cgcgtaaaat cctcataacc aatcaaataa tccacttcaa acccgatatg
     3361 tattaataaa tcgctcgcat attttttctt tatatggttc attttcttaa aataataagg
     3421 gagatcactc attgccatac tagccgttgt cacagcttcc ttgtccccag ctgtattttt
     3481 cataaattca ctcgaaagtg gcgcgtgctc tactatagaa tactcatcaa aatccagttc
     3541 aatcgctttt aaaaccattt cttccacgtc atcatgcgta ccatgtggac aaaattctgt
     3601 gtgcgtatgc ccgtctcttt tcatattcaa ccctctttca aaattctttt ccctaagtgc
     3661 tctaaatggt acactaatta taccataagc aactattttt ctattcatta tttacaaaaa
     3721 cactttaacg tgctaatatg ctaataaact aaaatatcgt aaaggagcta accagatgaa
     3781 cttaaataag aacttaccaa ccggaacacg tgataaactc tttcgtgaag cacaagctgc
     3841 atacaaaatt gagcaacaag tgaatcatta ttttgaaaaa cgtggattta aacgtattga
     3901 aacacctgtt atcgagtttg aagatgtctt ttcttctgaa catcaagccg atgcgaagtt
     3961 ataccgtttc tttgacgaaa aaggtcgttt gacagttcta cgtccggaca tgacccttcc
     4021 aattggtcga gttgtgagta caactggtgt gatgctccct ctaaaacttt cttatagtgg
     4081 aaaaattttt cgtgccaatg aagattttgg tggcgaacaa aacgaacaaa cgcaagctgg
     4141 aattgaaatc attggctatc cttcgattaa agcagagatt gaatgtattt taagtggaat
     4201 cggggtttta aatgctctag aaattccgaa ttttcaaatt gaactcggac atgcagcaat
     4261 ttatcgtcgt gttatccaac ttttaaatct ctccgaaaca gctgaaattg attttcgcca
     4321 actaattcaa aataaaagct taactggtat taaacgattt gttgccaata atccaagtac
     4381 acttgacgat tttattctag ccataccaag attatttggc ccagcgacag ctattttaaa
     4441 ccaagcaaaa agtttaacga ctgacaaagg aattttaacg gcactgcgcg aaatggaaac
     4501 cattgtggaa gctgtttctt acacagcaga tattagtgtc gatttaggac tcgtacaaga
     4561 ttttcattat tatacaggta taatttttag aggatacgct gaccttgctg ctgataattt
     4621 tttaagcggc ggccgttacg atcacctact agaacaattc accagctctt cctccccagc
     4681 agttggtttg gctcttaatc tcgactccct cacaactcta caaaaccgcg ctggcatcat
     4741 caaaaaacaa acgccaacaa ctcttttgat ccactacgac cttgaagcac tcccacaagc
     4801 agaaaaattc atgcaagaaa caccaaatag tgaattaagt ttttttgaaa cagcatcaaa
     4861 cgccatctct tttgcaaaaa aatggcatat tcccgaagtc gttcacgtct cgagccaagg
     4921 catccaaact attttccaaa gggaggtgga ctgatgaaag ctctaaaaat tgctctaacg
     4981 aaaggtcgac tggagaaaga cgcagtggca cttttggaaa aagctgggat tgactgttct
     5041 tctatgacag ataaaaagcg taaactaatt tttcatagta gcactcaacc aatctctttt
     5101 attttagtaa aagcggtcga tgtcatgact tacgtaaagc acggggttgc ggatattggc
     5161 atcgttggta aagacgtttt aatggaagca tctaaatccc attatgaaat gctcgacctt
     5221 gaaatcggca aatgccagtt ttgccttgct tctacacctg actttgaccc gagcagttat
     5281 cgacgaaaaa tcatcgcaac caagtatcca actgttgctt ccaaattttt ccgtgaaaaa
     5341 ggcgaagatg tagaaattat caaaatcgaa ggatccgtcg agattgctcc agtgcttggt
     5401 cttgctgatg ccatcatcga tatcgtcgaa actggctcca ctttaaaaga aaacggctta
     5461 cttatttatg aaaaaatgta tccaatctcc gcccgtctga ttgtcaataa agcttcctta
     5521 aaacagaaca aaacgcaaat tttccaatta atcgaccaat tagaacaagt gataaaggag
     5581 gagcgcgctg aatgaaaatt ttaaccggaa cagtaaatga gctattaaac gagctcaaaa
     5641 tagaaactga tacgaacact tccatccagg tggaaaccga agtaaaaacg attatcgaaa
     5701 aagtcaaaac agctggcgac caagccctat ttgacttcac atccaagttt gacggcgtag
     5761 ggctcaccga actccgcgtt ccagccgctg acatccaagc tgcaagcgca aaaatcgaac
     5821 ctgccttctt agacgcgctc caacaagcaa aagtaaatat cgaaagtttc cacagcaagc
     5881 aaaaacaaca tgctttcctt gatagtgaaa aagacggcgt cattcgaggg caattaattc
     5941 gtccactaga aaccgtcggc gtttacgttc ccggtggcac agcagcctat ccttcatcgg
     6001 ttttaatgaa tgtgttgcca gccaaaattg ccggagtaaa gcgaatcgta atgattaccc
     6061 ctcccggtga aaacggtatt aatccttacg ttctagcctc agctcaacta gctggtgtgg
     6121 acgaaattta ccaagttggc ggtgcacacg gaatcgccgc tctagctcac ggaacagaat
     6181 ctatccctaa agtagataaa atcgtcggtc ctggaaatat ctatgtcgcc actgccaaac
     6241 gtgaagtatt cggcttagtt gatattgaca tgatagccgg tccatccgaa atcgtcgtgc
     6301 tcgcagatga aaacgccaat cctgctttta tcgcagccga cttactctcc caagcagagc
     6361 acgatatttt agcccgtgct atcttaatca caactagtaa aaaaatcgcc gaggaaacac
     6421 aaaatgaaat tgacaaacag ctagaaaatc taccgcgaaa agcgattgct cagaaatcta
     6481 tcgaaacacg aggaaaaatc attatcgcag caaccacaca agaaatgttc gatatcatga
     6541 acgaaatcgc cccagaacac ttagaagtac aacttgaaaa tccgatgaac tatctctatc
     6601 aaattaaaaa cgctggctcc attttcttag ggagttatgc atcggaacct cttggcgact
     6661 attttgctgg cccaaatcac gtcttaccta caagtggtac cgcaaaattc ttctctcctc
     6721 ttggtgttga agattttacc aaacgttccg cctttatttc ttatacaaaa gaagcactcg
     6781 caaaggaaaa agatgctatc gttttacttg ctaaaaaaga aggtctagac gcccatgcca
     6841 aagccattca aattcgtttt gaggaggaaa actaaatgag aacagcgact aaaacacgca
     6901 ttactgctga aacttctatt gagctttcca ttaacctaga ttcccaagca gaatcaatta
     6961 tttctactgg agtcggattt ttggatcaca tgctcaccct tttcgccaaa cacagccgaa
     7021 taactttaaa tgtaaaagca gatggtgata catatatcga tgcgcatcac accgtagaag
     7081 acatcggcat cacactcggg ctttgtttaa aagaagcact tgctgataaa gcaagcatta
     7141 atcgttacgg ctccgcttat gtaccgatgg acgaatcact tggcttttgc gcactagatt
     7201 taagtagtcg ttcttattta gtttttgacg ccgaattaac aaaccctaaa ctcggtgatt
     7261 ttgacacaga actagtggaa gaatttttcc aagcagttgc ctttaacacg gaaatgaacc
     7321 ttcatctccg cgttctttat ggcaaaaaca cgcatcataa aatcgaagca ctttttaaag
     7381 cattcggtcg tgctcttcgt gaagcaatca cgattaaccc agaaatcaaa ggtgtaaatt
     7441 caactaaagg ggtcctgtaa atgattgtta ttattgacta cgatacagga aatacgaaaa
     7501 gcatcagtaa agcccttgat tttatcgggt tacaaaacaa aatttctagt gataaaacag
     7561 aaatcgctca agctgatggt gttattttgc ccggagttgg tgcttatcca gaagccatgc
     7621 aagaactcac tcgacgcgga ttagataaaa cattaaaaga aattgctacc gctggtaaac
     7681 caattcttgg cgtttgtctt ggtatgcaac tattactcga atcaagtaac gaacatagct
     7741 atactaaagg gctcggcctc attcccggtc atgtcgaaat gctaccagac gaatccgaat
     7801 ttgccgttcc gcacatgggc tggaatcaat tacaaatcaa acgcaccacc ccgcttacac
     7861 aaaacatcgc tggagaatat gtctattacg ttcattccta ctatgccaac tgtccagaag
     7921 cttacattat cgcaacaagt ggttattcta ttgatatccc tggcatgata aataacggca
     7981 atatttacgg agcacagttc catcctgaaa aaagcggcca aatcggtctt gaaattttaa
     8041 aaggttttaa ggaggtcatt cgttcatgca aatcttccca gcaatagact taaaaaatgg
     8101 acagtgcgtc cgtctcttcc aaggcgactt ctctaaaaaa acagttgtca atgaagaccc
     8161 aattgcccaa gcaaaagcat ttgctacaga cggcgcaacc tatttgcaca tcgtcgacct
     8221 agacggtgca ttagaaggac gtcctatcaa tctagaaatt attcaaagga tgaaaaaagc
     8281 agctaaaatc cctgttcaag ttggtggagg aattcgtagc atggcgcaag tggattatta
     8341 tcttgaatcc ggcatcgacc gcgtgattat cggttctgcc gctctaacag atccagattt
     8401 cctacgtgcg gcagtccaaa aatacggagc taaaattgta gcaggtatcg atgccaaaaa
     8461 cggttttgtg gcaacaagag gttggctcga tgtcagtcag gtaagctatt tagatttggc
     8521 taaacgaatg gaaaaagtgg gtgttgagac aatcatttac actgatatta gccgtgatgg
     8581 cacgctaact ggacctaatt tagaacaaat ggcaaatctc aaagaacacg ttaaagttag
     8641 tttaattgct tctggcggag tgagcagtcg tgcagatttg gaagcactcg cccaactcgg
     8701 cttatatgga gcaattgccg gaaaagccct ttataatcat gatatttcca tgtcagatat
     8761 tgtagaggtg gaacaaattg cttactaaaa gaatcatccc atgtcttgat gtcacagcag
     8821 gtcgagtcgt caaaggtgtt aattttgttt ccttaacaga tgtcggggac cctgtcgaaa
     8881 ttgctaaagc ttataatgaa gctggtgccg atgagctcgt ctttcttgat atcacggcaa
     8941 ctgtcgaact ccgtcaaacc atgatagatg ttgtggaacg aactgctgag caagttttta
     9001 ttccactcac agttggtggg ggtatcagta gtgtttctga catgaaagaa cttcttcaag
     9061 ccggagccga caagatttcg cttaattccg ccgccatcaa acgaccagaa ctcatccaag
     9121 aaggagcagc aaaattcgga aaccaatgta tcgttgtcgc aattgatgca aaatggaatg
     9181 gtacaaattg gagcgtcttc acgagaggcg gtcgaaatga taccggactt gatgctattg
     9241 aatgggccaa aaaagctgta caacttggtg ctggtgaaat cctactaaca agtatggacg
     9301 gcgatggaac caaaaacggt tacgatattc cgctcacaaa agcaatttca gcagcagttt
     9361 ccgtcccagt cattgcttca ggcggttgcg ggaatgccgc acatatggcc gaggtttttg
     9421 aaaaaacaaa ggcaaccgcc gctctcgctg caagcatttt ccactacggt gaactaagca
     9481 tcaaaaatgt caaaacaacc ttactcgaaa aaggagtgaa tattcgtcca tgacttctgt
     9541 agatttttct aaaggtcttg tcccaactat tatcctagac gatcaaaatg gcgacgtttt
     9601 aatgctcgct tatatgaacg aagaaagtta tcaaaaaacc cttgaaactg gctatacttg
     9661 gtttttttcg cgctccagaa acgaactttg gaataaaggc gcgacaagcg gacatactca
     9721 aaaagtaaaa caaatctgga ccgattgtga taacgacaca ttacttatcc gcgtaaccca
     9781 aatcggtcca gcctgccaca ccggcaaaaa aagctgcttt ttcaatctta taaaggagga
     9841 tttttaaatg ttaaatgacc tatatgaaga aattaaactg cgtaaaactc aaccaagaga
     9901 aggctcctat accaactatt tgttcgataa aggccttgat aaaattctca aaaaggttgg
     9961 tgaagaagca accgaagtcg ttattgctgc caaaaataac gagcaagaat taatcgctga
    10021 agtatccgat ttaacttatc acttgctcgt tctcttagcc gagcaaaata ttccattatc
    10081 aaaaatccaa gcagagcttc aaaatcgtga aggaaagcta agcaccactc gcgaccgtaa
    10141 agaaattaac gatttataaa aacatgacat tttcgtaagc ttagagatca ttattgtaag
    10201 aaaaagcgca tgatttttaa atacattttt tatatacttg tttacgtgga gagctttcat
    10261 tttcccaaga gaaagcaaat aatgttagag caataattct agtatccgaa ttagtcttat
    10321 cccttggctc gctttaatat tatttctccc taatactccc ttaaccgcat ccccctggtg
    10381 cggttatttt tttattacat cttcaatttc tacgcattaa aacctaagca aacgttctca
    10441 ttaactacat tttaaaaaat ttcagaaaaa ttggttttta tgcttgaaaa tattctcaac
    10501 aatgtgtaaa ctaacaacat aggtaagaaa agttgaccta cttaatgtac acaagccgat
    10561 gttcttcttg ctttataaca tcacgtgtag ttacattaag ttttctactt ttccttatag
    10621 tcaaaatatt taaacaagga gcgattatag tatggcacaa acatccacta ttcaaaatga
    10681 cacaaaggca gccgaagaat acgcagctcg cgtgtttgaa acaattaaac tacggaatcc
    10741 tggcgaaacg gaattccacc aagcagttga agaattctta aactctgtta tcccagccct
    10801 tgcaaaagaa cctaaatacg aagcaaatgg tattttagaa cagttaacag aacccgaacg
    10861 ccttatcagt ttccgagttc catgggtgga tgattctggc acagtacatg taaatcgcgg
    10921 ttaccgtgtc caattcaata gcgcaattgg tccatataaa ggcggtcttc gtttccaccc
    10981 ttccgttact ggaagcatcg tcaaattcct cggttttgaa caaatcttca agaactccct
    11041 aactggctta ccaatcggtg gcggtaaagg tggctctgac tttgatccaa aaggaaaatc
    11101 agactcagaa gtaatgcgtt tctgccaaag ttttatgact gaactacaaa aacatatcgg
    11161 tccagataca gatgttcctg ctggtgatat tggtgttggt ggtcgtgaaa ttggctactt
    11221 attcggtcaa tacaaacgtc ttcgcggtgc gtatgatgcc ggtacaatta caggtaaagg
    11281 cctttcttac ggcggaagtt tagctcgtac agaagctaca ggatacggtc ttgtttattt
    11341 caccgttgaa atgttagaag cagctggtga aaccattcgc ggcaaaaaaa tcgtcgtttc
    11401 tggttcaggt aacgttgcga tttatgcaat cgaaaaagca cacgaattgg gcgctaaagt
    11461 agttgcatgt agcgattctg ctggttttgt ttatgacaaa gaaggtatca aagttgaaac
    11521 agtaaaacaa ttaaaagaag tagaacgtaa acgtattagc gaatacacaa ccattcatcc
    11581 ttctgcagaa tattacgcag gcggcgacgt atggtccgtt ccatgtgata tcgcactacc
    11641 atgtgcaact caaaatgaaa tcaacgctga ccaagctcgt gcccttgtaa aaaatggtgt
    11701 tatcgctgtt gcagaaggcg caaacatgcc ttctactctt gatgcagtgg atatttacca
    11761 cgaaaataaa gttctattcg gtcctgcaaa agctgccaat gctggtggtg ttgccgtatc
    11821 agcacttgaa atggcacaaa acagcacacg tatgagctgg actttccaaa cagtcgacga
    11881 acatttacaa aacatcatga aagatattta taaaaattca agcaatgctg caagcgagta
    11941 tggcgcacct ggtaacctag ttatcggcgc aaatatcgcc ggattcctca aagtagcaga
    12001 cacaatgatt tctcaaggta ttatttaatt caaaaagccc ttctttctat ccgaaagaag
    12061 ggcttttttg ttatctcatt aattttcgta aaataaagga aagtccgaac catagaatca
    12121 cactaataaa aatcgtcaca atccaaccaa acgtattatg ttctaaagga agtggcatgt
    12181 tcattccaaa gaagcccgta ataatagtag gaaccgtcaa taaaatggat agcgccgtta
    12241 aaattttcat cgtatcattc aaattattgt tcaaaatatt attatatgta cctgacaatt
    12301 gctgtaagat ttgagagctc agccccgtca tttccaccag ttgcctcgct tcaattaaag
    12361 catcttcaaa ttgttccttt tccacttcat taagctcacg ataaatcaga tgggctttca
    12421 tttgctccag aagcgccgca ttttgcttag atgccgaaac aaaataaaca atcccagttt
    12481 ccaaatcaga taatgacaat aaatttttct tcgtcgtttt aattttcaat ttgtcattaa
    12541 tcgttcttct atccgtatcc atttcttcc
//
LOCUS       DABQVC010000078        12520 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.078,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000078 DABQVC010000000
VERSION     DABQVC010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12520
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.078"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..678
                     /locus_tag="IBJ56_001496"
     CDS             <1..678
                     /locus_tag="IBJ56_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417752.1"
                     /translation="YGFGVTTVLMMILPFQNNLWALFIFSMIICTVIEYVTATILEAL
                     FHTTWWDYHNWPLNVKGRICLPISIFWGFACIIVVRFLHPLVTEFADWILSWGGWIIP
                     ALIVVLMLIDTIKSVTSMLSFQKALAEFNEKLTAQANELKASVKERAKEFEEGLLKKQ
                     ENVDMKIAEIEAKRKQDKELAASMRKLKFNERRMLKSFPKMKVKRAAPFKNFNKSILR
                     VDKQKRK"
     gene            1048..3117
                     /locus_tag="IBJ56_001497"
     CDS             1048..3117
                     /locus_tag="IBJ56_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3417753.1"
                     /translation="MYLDERSNSLLKELLRHPDTSSTNLQAKFGLTRRQVDYSFQKIN
                     NWLEEQTYPKIHRAANGRFIVEPDLFQIIGEEDGEKTDWYIPSEKERASLIILMLTTG
                     SEELSLNHFISELEVSKNTVLRDLKLVQKTLEKFNLEVKYSRMRGYLIDGDEWNQRTA
                     LIYAAEHIIESFGGEEYLQDFMQVDEARIKELREKLEQVEHHLNLHFIDNKMQILPYI
                     LEAVFRRMKKGQTITTSFLIDYNELSDTREYGAAEIFIEEEPNMPEAERMYITLQLLT
                     SNVLPKQYLKSEETHKLRLALEQVLSEFEKKACIQLVDKESLLEKLFAHIKPAYYRIK
                     YHLTTDYSILDKIDQEFQAVHYIVKESLAPLERFIGSKVPENESIFITLFIGGHLIES
                     TEKLQTRLKAVVVCPNGLSISRLMEKTLRSLFPEIFFYQAMSIREFEQTKLGYDIVFS
                     AVPLSTDKKFFLINQLMDGKERLELRRRVMRAVYLVDEVNISVDQLMKTISKFADIKD
                     AARLEKVLADYLMPVPEENTSKHEGKSTLADLLEVTRITRKKSVKDWHEAIYHAALPL
                     LSAGVVEPAYVEEMKRQYPAPIMNIILRNTIAIPHAETEKGVNSLGMSLLYLEEGLPL
                     EGGKELHFIVVIAAIDKNAHFTALLQLMELSENKKELKKLADAANTEEMHQIIKNFTD
                     LETKKTM"
     gene            3151..3615
                     /locus_tag="IBJ56_001498"
     CDS             3151..3615
                     /locus_tag="IBJ56_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3417754.1"
                     /translation="MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLT
                     RLTDREQTFPTGLKLDGYGVALPHTDPECVTEQFIAVITVKDGIPFKLMEDAGQTVEA
                     NLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETITV"
     gene            3673..3954
                     /locus_tag="IBJ56_001499"
     CDS             3673..3954
                     /locus_tag="IBJ56_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417755.1"
                     /translation="MGQFKILVACGAGIATSTVVTDRVERLVKENNVDAEVKQIKISE
                     AASMQDGADLIVSTTILPTTYKIPAIIATSYITGMGMEELDEEILAHLK"
     gene            4015..5286
                     /locus_tag="IBJ56_001500"
     CDS             4015..5286
                     /locus_tag="IBJ56_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466187.1"
                     /note="with GatAB forms a phosphoenolpyruvate-dependent
                     sugar phosphotransferase transporter for galactitol;
                     subunit IIC forms the translocation channel and contains
                     the substrate binding site; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HAM3417756.1"
                     /translation="MDTLLSGVQYVLNLGPTVILPIMIFFIALIFRVPAKKALRSAIT
                     IGIGFVGINLVISLLSSNLGPAAQQMVERFGLNLTIIDAGWPAAAAASWASPVAAILI
                     PICLVVNLALIFFKVTKTLDIDIWNYWHFIAAGATGYIVTGGNWWFAILCAIIYEVAV
                     LWMADRTQPMVEEFYGLKGISLPTGSTAAFGFIGIPVGWLIAKIPGIKNIHVDPETIQ
                     KRFGIFGEPMMMGLILGIAIGILAGYDVGAVAQLGMSMGAVMFLMPRMVKILMEGLIP
                     ISESAREFMKSRFKGRELYIGLDAALSIGHPANISTGLILVPITLFLAVIIPGNKVLP
                     FGDLATIPFYVSFVVASRKGNILHSVLAGTVVIALALLMATDFGLVHTEMMKGVYEFP
                     KGATQVSTLDMGGNFFNWVILKFSQAWAAIF"
     gene            5323..6375
                     /locus_tag="IBJ56_001501"
     CDS             5323..6375
                     /locus_tag="IBJ56_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HAM3417757.1"
                     /translation="MRAAVLYENNVIKAEQIDEATCGKDQVRVEVKAVGICGSDIHKM
                     QTRWKYPLPAVMGHEFAGVVTEIGSEVTNVAIGDRVAGIPLEPCMECNYCKAGDFALC
                     DNYRMVGSHFHGGFAENVVMKADNVISIGDLDFEEGAMIEPLAVSMHGVLGIQPRLGD
                     TVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYTINPKNEDLKER
                     VFAYTNGLGADIALECAGSKITQEQCLLVTKKKGKVGFLGIAYADVLLHEEAFENIFR
                     RELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRYKLEETKEAFDMILSR
                     EHDYNKVMILPQKGDD"
     gene            6377..7408
                     /locus_tag="IBJ56_001502"
     CDS             6377..7408
                     /locus_tag="IBJ56_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HAM3417758.1"
                     /translation="MKAVVKTNPGYDQMELRDVEEPQVYGDKVKIKVAFTGICGSDIH
                     TFKGEYKNPTTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKERD
                     YNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKT
                     TIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSDRLRLAKELGMDRIVDTL
                     KEDLAEVVLGMTDGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDE
                     ESIIQREIAYIGSRSQKPSSWILALDLLANGKINTDKMITKVYGLDDWREAFEAVMAG
                     NEIKVLVKS"
     gene            7603..8043
                     /gene="rpiB"
                     /locus_tag="IBJ56_001503"
     CDS             7603..8043
                     /gene="rpiB"
                     /locus_tag="IBJ56_001503"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HAM3417759.1"
                     /translation="MKLTIGCDHGGRRLKDAIVKHLREKDIEVVDIGTYTDESVDFPS
                     YAEEVANQVVSGQSELGILCCGTGIGMSIAANKVDGIRAAVVSDTFSARATREHNNSN
                     VLCLGERVIGEGLALLLVDTWLEASFAGDRHKRRLDKITELERK"
     gene            8052..8726
                     /locus_tag="IBJ56_001504"
     CDS             8052..8726
                     /locus_tag="IBJ56_001504"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HAM3417760.1"
                     /translation="MRKIAASIMCADQLHLGEELRRLESAGVELLHCDVMDGVYVNNL
                     ALGPEYLEIVRNNTEIPLDIHLATITPLKYIDMFGPVKPEYISFHVEVAEDVSEVIRK
                     IRSYNVKPSIAINPETPIEAIYPYLDDVEMVLMMTVNPGFAGQKFQTDVLQKLHDLKA
                     KLAGKVHAPLIEVDGNINKETVGLMRDCLPDIYVLGTSALFHDRDKTSYAERLVHIWS
                     DVEKHV"
     gene            8760..10775
                     /gene="tkt"
                     /locus_tag="IBJ56_001505"
     CDS             8760..10775
                     /gene="tkt"
                     /locus_tag="IBJ56_001505"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAM3417761.1"
                     /translation="MKKTLDRQAVDTIRSLSIDMIEKANSGHPGMPMGAAPMAYMLFA
                     KHLVFNPANPEWFNRDRFVLSAGHGSALLYSMLHLFGYDVKMEDLKQFRQLDSLTPGH
                     PEFGWTAGVDATSGPLGQGIGMAAGMALAESHLAAEYNQPNYPIVDHYTYAICGDGDL
                     MEGVASETASLAGHLGLGKLIVLYDSNDICLDGDLSATFSENAADRFRAYGWQVLRVE
                     DGNNLAAIQEKIVQAKLETSKPTLIEVKTVIGYGAPTKAGSSASHGAPLGEKEANGAK
                     EHYEWAEEPFTVPAEVRDYLRNYKARGEKLEGAWNTMLANYKKEFPELASQLDRVLAG
                     EVAADWNANLPTFEAGTNVATRSASGKMINAIAAELPELFGGSADLGCSNKTFIDASP
                     AYSIQDPAGKNIWFGVREFAMGAMLNGMALHSGLRVFGSTFFVFSDYVRPAMRMAALM
                     QLPVTYVFTHDSIAVGEDGPTHEPIEQLASLRAMPGLTVIRPADAKETRAAWEIAATN
                     TNGPIALVLSRQDLPVLENAQEEVDAGVDKGAYIVAPANSSKPDAIIIATGSEVSLAI
                     EAKAELAKKDIDVSVVSLSSWERFEKTTDAYKESILPKEVTARFAIEAGATFGWKEFI
                     GSEGDMLGIDHFGASAPAKDLFNAYGFTPENVADRVETVIAKAGVRV"
     gene            10772..11416
                     /locus_tag="IBJ56_001506"
     CDS             10772..11416
                     /locus_tag="IBJ56_001506"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HAM3417762.1"
                     /translation="MTFVAPSLLAADYMNMANSIKEAEHAGADYLHIDVMDGHFVPNL
                     TFGIDMVEQIKKTATIPLDVHLMLSNPENYIEKFAAAGAHIISVHIEAAPHIHRVIQQ
                     IKAAGCKAGVVLNPGTPASVLDAVLADVDLVLQMTVNPGFGGQAFIDSTIKNMRYLDH
                     WRRENNGSYVIEVDGGVNAETAEKCKQAGVDVLVAGSYFFRADDKIACIKELKA"
     gene            complement(11472..>12520)
                     /locus_tag="IBJ56_001507"
     CDS             complement(11472..>12520)
                     /locus_tag="IBJ56_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3417763.1"
                     /translation="ANNLKTVTTPATVESIDASAFENNFITNITIQNPNLQMAYQAFA
                     AQTVLSTLIVPSNHILPIENYIQFQDASAHLTTDNLFITDLANGITYNQAEKALNFSA
                     EPLESTFSLFTGTNRFDSYYDISEYGPSGKPFIYFKYTKPVLVSYKDASGNELATSTR
                     LDGSIGENYVTTPKIIDGYTLKETPGNATGQFSETPQNVTYIYEKTAVQNGTVTVKYQ
                     DESGKTLAKDTVLTGEVNNTYQTKSKDIAGYKLQKVEGNESATFSTTPATVTYIYEKI
                     ANSDNTNTNGEMTDNTTLSTNDTVISSEATKKVDKNTSNILPTTGDSKDALFFALGSL
                     LTLLSTSFFFFKRS"
BASE COUNT         3991 a         2253 c         2789 g         3487 t
ORIGIN      
        1 tacgggtttg gggtaacgac agttttaatg atgattttac cgtttcaaaa taacttatgg
       61 gccttattta ttttttcgat gattatttgt acggtgattg aatatgttac cgcaacgatt
      121 ttagaagcat tattccatac aacatggtgg gattatcaca attggccact caatgtaaaa
      181 ggacgaattt gcttgccgat ttcgattttt tggggatttg cttgtattat cgttgtacgc
      241 ttcttgcacc cacttgtcac cgaatttgca gattggattt taagctgggg tggctggatt
      301 attcctgcac tcatcgtggt tctgatgctt attgatacga ttaaatctgt cacaagtatg
      361 ctatcattcc aaaaagcact tgccgaattt aatgaaaaac taactgccca agcaaatgaa
      421 ctaaaagcaa gcgtaaaaga acgggcgaaa gaatttgaag aaggactttt gaagaaacaa
      481 gaaaatgttg atatgaaaat tgctgaaata gaagcaaaac gtaagcaaga caaagaactt
      541 gctgccagca tgcgcaaact taaatttaat gaacgacgaa tgttaaaatc gttcccgaaa
      601 atgaaagtga aacgcgcggc gccatttaag aatttcaaca aaagtatact cagagtcgat
      661 aaacaaaaaa gaaaatagag aaactgatta tggcgcgaat ggtatttttt atcatttgcg
      721 cctttttttg cgttattttt tacaaaacgt gtagaaagaa ccgcacatct tttgtatgat
      781 taagaagaaa catcgccccg caaagctccg ttacttcatt ctcatttttg tttcaaagta
      841 gattttacct accttcaaga agtttcataa tctcgctata tatcaagctt tacaagcaac
      901 tttcacatat ttgcaaataa taggattgtt aaaaaagtca caagtaaagc ccaatgatgt
      961 acattctttc cgcaagttat tgggatgaaa gcgtgtacat ttttattaga tttagattta
     1021 taattaaaac gaacaggagg gaacgacatg tatttggatg agagaagtaa ttcactttta
     1081 aaagaactct tacgacatcc tgacacatcg agtacgaact tacaagcaaa attcggttta
     1141 actcgaagac aagtcgacta tagtttccaa aaaattaata attggctaga agaacagact
     1201 tacccgaaga ttcatcgtgc cgcaaatggt cgatttatcg tagaacctga cctgtttcaa
     1261 atcattggtg aggaagatgg cgaaaaaaca gattggtaca tcccgtcaga aaaggaacgc
     1321 gctagtctaa tcatcctcat gttaacaaca ggaagtgaag agttatccct taatcacttt
     1381 ataagcgagc tggaggtgag caagaacacc gtattacgag acttgaagct ggtacaaaag
     1441 acacttgaaa aattcaacct tgaagttaaa tattcgcgga tgcgtggcta tttaattgac
     1501 ggagacgagt ggaatcagcg gacggcactc atttatgcgg cagaacacat catagaaagt
     1561 tttggcggcg aagagtattt acaggatttc atgcaagtgg acgaagcgag aattaaagag
     1621 cttcgggaaa aattggaaca agttgagcat catctgaatt tgcattttat tgacaataaa
     1681 atgcaaatac tgccttacat tttagaagct gtttttcggc ggatgaagaa agggcaaaca
     1741 attacgacat ctttcctgat tgactacaat gaattgtcag atactcggga atacggagca
     1801 gcagagattt ttattgaaga agagccgaat atgccagaag cagagcgaat gtacatcaca
     1861 ttacaacttt taacttccaa tgtacttccg aaacaatatt tgaaatcgga ggaaacgcac
     1921 aagttaagac tggcgctgga acaagttcta agcgaatttg agaaaaaggc ttgtattcaa
     1981 ctagtagaca aagaatcgtt acttgaaaaa ttatttgcac acattaaacc tgcgtattat
     2041 cgaattaagt atcatcttac aacagattac agcattttag acaagattga tcaagaattc
     2101 caagccgtgc attacatcgt gaaagagtcg ttagcaccat tagaacgttt tattggtagc
     2161 aaagttcctg aaaatgaaag tatatttatt acccttttca ttggagggca tttaatcgaa
     2221 tccacagaga aattacaaac gagactaaaa gcagttgtgg tttgtccgaa cggattgtcg
     2281 atttcgagat tgatggaaaa aacattacga agcctttttc cggaaatatt tttctatcaa
     2341 gcgatgtcga ttcgagaatt tgaacaaaca aagttaggtt atgacattgt attttccgca
     2401 gtgccacttt cgaccgacaa gaaatttttc cttatcaacc aactgatgga tgggaaagaa
     2461 cgcctggagc ttagacgccg ggtgatgcga gcggtttact tagtggatga ggtgaatatc
     2521 agcgtcgatc aattaatgaa aactatttcc aaatttgctg atattaaaga tgctgcccgt
     2581 cttgaaaaag tgctagcaga ttatttaatg ccagttccag aagaaaacac atccaaacac
     2641 gaaggcaaaa gcacactcgc agatctactc gaagtaacgc gaatcacacg taagaaatca
     2701 gtgaaagatt ggcatgaggc aatttatcat gcggctttac cgttactttc ggcgggagtg
     2761 gtggaaccag cctacgtgga agaaatgaaa cggcaatatc cggcaccgat tatgaacatc
     2821 attctccgta atacaatagc tatccctcat gctgaaacgg aaaaaggagt aaatagcctc
     2881 ggaatgagct tgctttatct agaagaaggc ctgccacttg aaggcggtaa agagctacat
     2941 tttatcgttg tcattgcagc catagataaa aacgctcact tcacagcttt actacaattg
     3001 atggaattat cggagaacaa aaaagaactg aaaaaacttg cggatgctgc gaacacagaa
     3061 gaaatgcacc aaataattaa aaacttcacg gacttggaaa caaaaaagac aatgtagaga
     3121 agtcagaaag aattacagga ggatttcgta atggatttag tacaattttt gaaaaaagga
     3181 atggtttggg ttcaatcgga tatcgagaaa caagaggacc tattccaaat ggtcgcagaa
     3241 agtggaaagt ctgaaggata tgtaacggat gactttttaa caagactaac agaccgtgaa
     3301 caaacctttc caacggggct aaaattagat ggatacggcg tggcattacc gcacacggat
     3361 ccagaatgcg ttacggaaca atttatcgcc gtaatcactg tgaaagatgg cattccattt
     3421 aaattaatgg aagatgctgg tcaaacggtt gaagcgaatt tgattttcgt actcggacta
     3481 aatgaacctc acagccagct cgcggtactt cagcaattga tggggacgat tcaggataaa
     3541 gacaatgtag ccgcattact cagagcgaaa gatgaagacg aagtaaaaca aattttagaa
     3601 actattaccg tttaaaaaaa acaggaaaat tagccgcggg aaatcgcagc aattaattag
     3661 gaggaattta tcatgggaca atttaaaatt ttggtagctt gtggagcagg aattgcaaca
     3721 tcaacagtag taacggacag agtagaacgt ttggtaaaag aaaacaacgt ggacgcagaa
     3781 gtaaaacaaa ttaaaatttc agaagcagca tctatgcaag acggagcgga tttaatcgta
     3841 tcaacaacta ttttaccaac aacttacaaa atcccagcga ttattgcaac ttcttacatc
     3901 actggtatgg gtatggaaga attagacgaa gaaatacttg cgcaccttaa ataaaggctg
     3961 cgcaagggag tttagaaatc atcattaaac agagaaaaaa ggaggaaata ttaaatggat
     4021 acacttctgt caggagtaca gtatgtttta aacttggggc ctacagttat tttgcctatt
     4081 atgattttct ttattgcatt aattttccga gtaccagcaa agaaagcgct tcgttcagcg
     4141 attacgattg gtatcgggtt tgtaggtatt aaccttgtta ttagtttact atctagtaac
     4201 ttaggtccgg cagcgcaaca aatggttgag cgttttggac tgaatttaac aattattgat
     4261 gcaggttggc cagcagcagc cgcggcttca tgggcttctc cagttgcagc aattttaatt
     4321 ccaatctgtt tggtagttaa cttagcactt attttcttca aagttacgaa aacacttgat
     4381 attgatattt ggaactactg gcacttcatc gcagcaggtg caactggtta tatcgtaact
     4441 ggtggtaact ggtggttcgc gattctttgt gcgatcatct atgaagttgc tgttctttgg
     4501 atggcagaca gaacacaacc tatggtagaa gaattttacg gattaaaagg gatctcctta
     4561 ccaacaggtt ctacagcagc attcggtttc atcggtattc cggttggttg gctaatcgct
     4621 aaaatccctg gtattaaaaa catccatgtt gacccagaaa ctattcaaaa acgttttggt
     4681 attttcgggg aaccaatgat gatgggtctt attctaggta ttgcaatcgg tattcttgca
     4741 ggctatgacg ttggcgcagt tgcacaactt ggtatgtcca tgggtgcggt aatgttctta
     4801 atgcctcgta tggttaaaat tttaatggaa ggtttaattc caatttcaga atccgctcgt
     4861 gaattcatga aatctcgttt caaaggccgc gaactttata tcgggcttga tgcagcactt
     4921 tcaatcggtc acccagcgaa tatttctact ggtttaatcc ttgttccaat cactcttttc
     4981 ttagctgtta tcattcctgg taacaaagta cttccttttg gtgacttggc aactattcca
     5041 ttctacgtat cattcgtagt agcatctcgt aaaggtaaca ttcttcactc tgttttagct
     5101 ggaactgtag ttattgcact agcgcttctt atggcaactg acttcggtct tgttcataca
     5161 gaaatgatga aaggtgtata cgaattccct aaaggagcaa cacaagttag tacacttgat
     5221 atgggtggta acttctttaa ctgggttatt cttaaattct ctcaagcttg ggcagctatt
     5281 ttctaagttt tgtcttaatg atatagaaga ggtgatagta acatgagagc agctgtgtta
     5341 tacgagaata atgtaataaa agcagaacaa attgatgaag cgacttgtgg gaaagatcaa
     5401 gttcgtgtcg aagtaaaagc agtcggaata tgcggatcag atattcataa aatgcagact
     5461 cgctggaaat acccactgcc tgctgtaatg ggacatgaat tcgcaggtgt agttacggaa
     5521 attggtagcg aagtaacaaa cgtagctatt ggtgaccgtg ttgcagggat tccgctcgag
     5581 ccttgtatgg aatgtaatta ttgtaaagcg ggcgactttg cattatgtga caactaccgg
     5641 atggtgggat cacacttcca cggcggattt gctgaaaatg tcgtcatgaa agccgacaat
     5701 gtcatttcta tcggcgacct tgattttgaa gaaggtgcga tgattgaacc acttgctgta
     5761 tcgatgcacg gggtacttgg tattcagccg agacttggcg atacggtcat tgtcttcgga
     5821 attggaacca tcggaatctt ggttgtacaa tgcttacttc ttgcgggagt aaaagatatt
     5881 atcgcggttg atatcagtga taaaaagtta gcagacgcgc gggaattcgg ttgcaaatac
     5941 actattaatc caaaaaacga agacttaaaa gaacgcgttt ttgcttatac aaatggtctt
     6001 ggggcagata tagcgctcga gtgtgctggt tccaaaataa cgcaagaaca atgtcttctt
     6061 gtaacaaaga aaaaaggtaa agttggtttt ctaggaatag cttacgcaga tgtgctttta
     6121 cacgaggaag cttttgaaaa tatttttaga cgtgaactta cgctgaaagg tttttggaat
     6181 tcttactcgg caccatttcc tggtgaggaa tggcgtacgt cgattgaatt cgtgaaacaa
     6241 ggtcgaatta aactgaaacc actaatttcg catcgttata agctagaaga aacgaaagaa
     6301 gcgtttgata tgattctttc cagagagcat gattataaca aagtgatgat attgccgcag
     6361 aaaggtgacg attaatttga aagcagtagt aaaaacaaac cccggatatg atcaaatgga
     6421 gctaagagat gtagaagaac cacaagtcta tggcgacaaa gtaaaaatca aagtagcatt
     6481 cactggtatt tgcggatcag acatccatac gtttaaaggt gaatacaaaa atccaacaac
     6541 tcccgtcaca ctgggacatg aattttctgg tgtcgttgta gaagttgggc cagatgtaac
     6601 aagtatcaaa gtgggagacc gtgtcacaag tgaaacaact tttgaaactt gtggagaatg
     6661 tatttattgt aaggaacgtg attacaattt atgtagcaat cgtcgcggca ttggtacgca
     6721 agcaaatggt agttttgcag aatttgtttt atctcgcgaa gaaagttgtc acgtgcttga
     6781 tgaacgtatt tcgctcgaag cagcagcact aacagaaccg cttgcatgtt gtgtgcattc
     6841 ggcgcttgaa aaaacaacga ttcgtccaga tgacacagta cttgttttcg gaccaggtcc
     6901 aattggtttg ttactagctc aagttgtgaa agcgcaaggg gcaacggtga ttatggcagg
     6961 aattaccaaa gatagtgacc gcttacgtct agcaaaagag cttggaatgg accggattgt
     7021 cgatacttta aaagaagact tggctgaagt tgtgcttggc atgacagatg gttacggagc
     7081 ggaacgcgta tttgattgtt ctggcgcagt acccgctgta aatcaaggat tacctctaac
     7141 gaagaaaaaa ggcgattttg ttcaagtagg actttttgcc gaaaagaaaa atgcgattga
     7201 tgaagaatcc attatccaac gtgaaattgc ttatatcggc agccgttcgc aaaaaccatc
     7261 ttcttggatt ttagcgctcg acttactagc aaatggcaaa atcaatacgg ataaaatgat
     7321 tactaaagta tacggtttgg atgactggcg cgaggctttc gaggcagtta tggcaggaaa
     7381 tgaaattaaa gtattagtga aatcttaata atggaggatg ggctgtatga aaaaacatca
     7441 aaaaaaggat aaccgtgcaa acgaatccaa agcttctcgg gctcagatgt tttacagtag
     7501 tcatccttag aaatgagccg agaacatatt cgcgtatgtt ctcggttcca tttcattata
     7561 agacgttaaa agaaaaaaat ctattaatga aggtgaaatt aaatgaaatt aacaattggt
     7621 tgcgaccacg gcggacgtag actaaaagat gccattgtga aacatttacg tgaaaaagat
     7681 attgaagttg ttgatattgg aacatataca gatgaaagtg tcgattttcc atcttatgca
     7741 gaagaagttg ccaatcaagt agtaagcggg caatctgaac tcggtatttt gtgctgtgga
     7801 actggaatag gtatgagtat tgctgctaac aaagtggacg gaatccgtgc tgcggttgtt
     7861 tcggatactt tctcagcgcg tgccacccgc gaacataaca atagcaatgt tctctgtcta
     7921 ggcgaacgtg ttatcggtga aggattagcg cttttacttg ttgatacttg gcttgaggca
     7981 tcatttgcag gagatcgcca taaacgccga ttggataaaa ttactgaact cgaaagaaag
     8041 tgaggatgaa catgaggaaa atagccgctt caattatgtg tgcagaccaa ctacatttag
     8101 gtgaagagct ccgtcgcctt gaatctgctg gtgtggaact actacactgc gatgtgatgg
     8161 acggtgtata tgtgaataat cttgcgctcg gtccagaata tttggaaata gtgcgaaaca
     8221 atacagaaat ccctctagac atacatttgg ctacgattac cccacttaaa tatattgaca
     8281 tgtttggtcc tgtgaaaccg gaatatattt cttttcatgt agaagtagcg gaagacgtgt
     8341 cagaagtcat ccggaaaatc cgctcttaca acgttaaacc atcgattgcg ataaatccag
     8401 aaacacctat cgaagccatt tatccttatt tagatgatgt cgaaatggtg ttaatgatga
     8461 ctgtaaaccc gggttttgcg ggacaaaaat ttcaaacaga tgtattacaa aagctacatg
     8521 atttaaaagc aaaactagct ggaaaagtcc atgcgccgct cattgaagtg gatggcaata
     8581 ttaataaaga aacagtaggc ttaatgcgag attgcttacc agacatttat gtactaggca
     8641 catccgcgtt atttcatgac cgagataaaa cgagttatgc agaaagacta gtacacattt
     8701 ggtcagatgt agaaaaacat gtgtaataaa gcacaaacaa tttaagggag atgacagttt
     8761 tgaaaaaaac attagataga caagccgtgg acacgattcg ttcgttatcc attgatatga
     8821 ttgagaaagc aaattcagga cacccaggaa tgccgatggg agcagctcca atggcgtata
     8881 tgctatttgc gaaacattta gtattcaacc cagccaaccc agaatggttt aaccgcgatc
     8941 gctttgtttt atcagcagga cacgggtctg cgctacttta tagcatgctt catttatttg
     9001 gttatgatgt aaaaatggaa gacttaaaac agttccgtca attagatagt ttgacaccag
     9061 gacaccctga atttggatgg actgctggag tcgatgcaac gagtggcccg cttggacaag
     9121 ggattggtat ggcggctgga atggcgcttg cagagtctca tttagcggcg gagtataacc
     9181 aaccaaatta tccaattgtc gaccattata cgtatgcgat ttgtggtgac ggagacttga
     9241 tggaaggcgt ggcatcagaa acagcctcac ttgcaggaca tttaggactt gggaaattaa
     9301 tcgtattgta cgattccaat gatatttgtt tagatggaga tttaagcgca acgttcagtg
     9361 aaaatgcagc agaccgtttc cgcgcatacg gctggcaagt tttacgtgta gaagatggca
     9421 acaatttagc ggcaattcaa gaaaaaattg ttcaagcaaa attagaaaca tcgaaaccaa
     9481 cgctaatcga agtgaaaaca gtcatcggtt acggcgcgcc aacaaaagca ggcagctccg
     9541 caagtcacgg tgctccgctc ggtgaaaaag aagcaaatgg tgcaaaagag cattacgaat
     9601 gggcagaaga acctttcaca gtaccagccg aagttcgtga ttacttaaga aattacaaag
     9661 ctcgcgggga aaaactagag ggtgcttgga acacaatgct cgctaattac aaaaaagaat
     9721 tcccagaact tgcaagtcaa ttagaccgcg tgttagcggg agaagtagct gccgattgga
     9781 acgctaattt gccaactttt gaagcaggca caaatgttgc aacgcgctct gcttctggga
     9841 aaatgattaa cgcaattgca gccgaattac cggaactttt cgggggatcc gctgacttag
     9901 gttgctcgaa caaaacattt attgatgcga gcccagcata cagcattcaa gacccagctg
     9961 gtaaaaatat ctggttcggt gtgcgcgaat ttgcgatggg agcaatgtta aacggaatgg
    10021 cacttcatag cggtttgcga gtgtttggct cgactttctt cgtcttctca gactatgtcc
    10081 gcccagcaat gcggatggct gctttaatgc aacttccagt aacgtatgta ttcacgcatg
    10141 acagtatcgc tgtaggtgaa gacggcccga cacatgaacc aatcgaacaa ctagcctcgc
    10201 ttcgtgctat gccaggccta acagttattc gcccagccga tgccaaagaa acccgcgctg
    10261 cttgggaaat tgccgcaact aacacaaatg gtccaatcgc acttgtatta tcacgccaag
    10321 acttaccagt gcttgaaaat gcacaagaag aagtggatgc aggtgtagat aaaggtgctt
    10381 atatcgtagc accagcaaat agttccaaac cagacgctat cattatcgca acaggatcag
    10441 aagtgtccct tgcaattgaa gcgaaagccg aacttgcgaa aaaagatatc gacgtttccg
    10501 ttgttagttt atccagctgg gaacgctttg aaaaaacaac cgatgcttat aaagaaagca
    10561 ttttaccaaa agaagtcaca gcgagatttg cgattgaagc aggagcaaca ttcggttgga
    10621 aagaatttat tgggtcagaa ggcgatatgt taggaatcga tcacttcggc gcatctgccc
    10681 ctgcgaaaga tttgtttaac gcttatggat ttacaccaga aaatgtggcg gatcgtgtcg
    10741 aaactgtgat tgcgaaagcc ggtgtgcgcg tatgacattc gtagcgccat cgttactcgc
    10801 agctgattat atgaacatgg caaactccat taaagaagca gaacatgccg gagctgacta
    10861 ccttcatatc gatgtcatgg acggacattt tgtgccgaat ctgacgtttg gaattgatat
    10921 ggtcgagcaa atcaagaaaa cagcgactat tccactggat gtccacttaa tgctctcgaa
    10981 cccagaaaac tatattgaaa aatttgcagc agctggggcg cacattattt ccgtgcatat
    11041 cgaagcggcg ccgcacatcc accgcgtcat tcaacaaatt aaggcagcgg gctgtaaagc
    11101 gggagtcgtg cttaatccag gaacaccggc gagcgtgctg gatgccgttt tagcagatgt
    11161 agatttagtt ttacaaatga ccgtaaatcc agggtttggt ggacaagctt tcattgattc
    11221 taccatcaaa aacatgcgct atctggatca ttggcgccga gaaaataacg gcagctatgt
    11281 gatcgaagtc gacggtggtg taaatgccga aaccgcagaa aaatgtaagc aagcgggcgt
    11341 agacgttctt gtagcaggct cttacttctt tagagcagat gataaaattg cttgtattaa
    11401 agaattaaaa gcgtaacaaa aaaagtgcta caaaccaact agcggtttgt agcacttttt
    11461 tatggagtgg tttaacttct tttaaagaaa aagaagctag tagataacaa cgtcaataaa
    11521 cttcctagtg caaaaaagag agcatctttt gaatcaccag tagttgggag gatattagag
    11581 gtgtttttat caactttttt tgttgcttcg gatgaaatca cagtatcatt agtactcagt
    11641 gtagtattgt cggtcatttc tccattggta tttgtattat cactgtttgc tattttttca
    11701 taaatatagg taacagttgc aggggttgtg ctaaaagtag ccgattcatt tccttccact
    11761 ttttgaagtt tatagcctgc tatgtctttg cttttagttt ggtaggtatt atttacttca
    11821 ccggttaaaa cagtatcttt tgctagtgtt ttacccgatt catcttgata ttttacagtg
    11881 actgtcccat tttggacagc agttttttca taaatatacg ttacattttg cggtgtttca
    11941 gaaaattgtc ctgtcgcatt tccgggtgtt tcttttaaag tatagccatc tattatttta
    12001 ggagtagtga cgtaattttc accaatacta ccatctaatc tagtagaagt agctaattca
    12061 ttcccagacg catctttata ggaaactagg actggtttag tatacttgaa gtagataaat
    12121 ggctttccag aaggaccata ttcagaaata tcatagtaag aatcaaatcg atttgtccca
    12181 gtgaaaagtg aaaaagtaga ttcgagtggc tctgctgaaa agtttaatgc tttttcggct
    12241 tgattatacg taataccatt cgctaaatca gttatgaata aattatctgt agtcaaatga
    12301 gccgaagcat cttgaaactg aatgtaattt tctataggta ggatgtggtt gcttggtaca
    12361 atgagtgtac ttaaaactgt ttgagcggca aaagcttgat aagccatttg aagatttggg
    12421 ttttgaattg taatattagt aataaaatta ttttcaaagg cagaagcatc aatactttca
    12481 acagtggctg gtgtagtcac tgtttttaaa ttattagcta
//
LOCUS       DABQVC010000079        12403 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.079,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000079 DABQVC010000000
VERSION     DABQVC010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12403
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.079"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            51..953
                     /locus_tag="IBJ56_001508"
     CDS             51..953
                     /locus_tag="IBJ56_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HAM3417764.1"
                     /translation="MNVNAETEDATLLLDGLLQNVAIIRFDTNKKVTYANALFAEAMG
                     YSEEEMLTLSHPDLCFPDLVQSASYKAMWTNLLAGQKFQNKIERKNARGERVWFEATY
                     IPIIREDTVVGVAKIATDITRREETVHDFASGLKSMATNLKEHSSVGKTRSEALLELV
                     KSITKESNENTDTLHDLQTEAQNIHGIINTINGIASQTNLLALNAAIEAARAGDAGRG
                     FSVVAEEVRKLSSRVEEAIKEVEKSVNGITQEINTISSGTERVEAKVEESQEVLILSL
                     EDFSQIESASTALDQNAGAFTKMI"
     gene            981..1187
                     /locus_tag="IBJ56_001509"
     CDS             981..1187
                     /locus_tag="IBJ56_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417765.1"
                     /translation="MKLIGKHPSGRAIIIRLNNQEYHYETANSFGSATSLTRAKTEAR
                     ADSFTSSEMNQGLHIGNWHWKELG"
     gene            complement(1227..1580)
                     /locus_tag="IBJ56_001510"
     CDS             complement(1227..1580)
                     /locus_tag="IBJ56_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417766.1"
                     /translation="MKKLFDETNEFEAKYYRNIWYGYIDNEFAPELSDEIKQLIQSDL
                     TEKTANPIEATHWVFYSETQAGDAIGDKVRSSIMVRHRDNKFVVHYNVSDFQFVTVFD
                     VATAFKDQLEQALNA"
     gene            complement(1609..2010)
                     /locus_tag="IBJ56_001511"
     CDS             complement(1609..2010)
                     /locus_tag="IBJ56_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosfomycin resistance thiol transferase FosX"
                     /protein_id="HAM3417767.1"
                     /translation="MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKE
                     KFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQG
                     EGRSIYFYDFDNHLFELHAGTLEERLKRYHE"
     gene            complement(2025..3404)
                     /gene="rlmD"
                     /locus_tag="IBJ56_001512"
     CDS             complement(2025..3404)
                     /gene="rlmD"
                     /locus_tag="IBJ56_001512"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HAM3417768.1"
                     /translation="MNQNPVEEGQKFPLTIRRMGINGEGIGYFKKAVVFVPGAITGEE
                     VVVEAVKVRDRFTEAKLNKIRKKSPNRVTAPCPVYEACGGCQLQHVAYSAQLELKRDI
                     VIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMVGSGQVETGLFGANSHQL
                     VPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTIVVRTGVKTGETQLV
                     FITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKL
                     MELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAGKVK
                     EVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNEGFRPDAVIVDPPRS
                     GCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKKYRIRYMQPVDMFPQTAHVET
                     VVLLQLKDK"
     gene            complement(3469..3849)
                     /locus_tag="IBJ56_001513"
     CDS             complement(3469..3849)
                     /locus_tag="IBJ56_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HAM3417769.1"
                     /translation="MTKPLKLVYTENGFDTGSFLIDDKLTEYSPADLMLMSIASCSAI
                     VFRNILKKKRVNFTDLWVDATMERIPEEENRISAIHLHFKITGAALDPKALEKALKLT
                     PKYCSMVRSVEKSILVDESLEIMP"
     gene            3956..4600
                     /locus_tag="IBJ56_001514"
     CDS             3956..4600
                     /locus_tag="IBJ56_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HAM3417770.1"
                     /translation="MEGVGNKVIVLAGMIGAGKSSYTELIANELGTKAFYESIKDNRI
                     LEMFYEDPKRWAFALQIYFLNTRFRSIKAALTDQNNVLDRSIYEDALFTQINFEEGNI
                     SEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQTFDNP
                     GLLDYYKHLHSRYDSWFESYDKSETLVINIDEIDINQPNDADYVMQLIHEKLKR"
     gene            complement(4630..5499)
                     /locus_tag="IBJ56_001515"
     CDS             complement(4630..5499)
                     /locus_tag="IBJ56_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HAM3417771.1"
                     /translation="MWKKVVKYTKKNGIVQIGQTVSARVGRNDVSGNAAQLAYYMLFS
                     IFPMLLIAATLLAYLHIDKDSVFNMIKEFAPDQIMDFLEENLNNLLTQKNGGLLSIGI
                     IATLWSASNGMNAVMKSLNKAYGVTNKRNYVVQRLLSMFFTLAMLATVGATLLLLVFG
                     QQIGMFLINHLNFSEDFLSFWNNLRWTVTLIVIFVVFTFLYWVAPNRRSTLISVLPGA
                     LFSTIGWTVASLGFAYYVNNFGNYSATYGSIGVIIILMLWFYLTGIILMIGGELNATL
                     AIRKKKKELGEIN"
     gene            5589..5810
                     /locus_tag="IBJ56_001516"
     CDS             5589..5810
                     /locus_tag="IBJ56_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1128 domain-containing protein"
                     /protein_id="HAM3417772.1"
                     /translation="MNLETPSQENLNFMLTEITTKLKMVNVGVFENLELDSVDYNTLI
                     DIYQLIKRKSNFSPREMQLFAEELRRIRK"
     gene            complement(5830..6636)
                     /locus_tag="IBJ56_001517"
     CDS             complement(5830..6636)
                     /locus_tag="IBJ56_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAC(3) family N-acetyltransferase"
                     /protein_id="HAM3417773.1"
                     /translation="MGEKMAIWRTKKPATKQKIVSDLQESGIKKGDTIIFHASMSKAH
                     WICGGPVTVILALQELVGESGNIVMPAQTGQLSDPAKWENPPVPESWWKIIRRETPPF
                     DPLVTPTRGMGVIAETFRTMPDVERSFHPYHSFCAWGKDKKQILANQPLAKSMGDESP
                     LGKMYQLDAKIILFGVDNNNNTSLHLAEERSNVFPLIENQAAFLKNGEIIWEKYQEID
                     YNSEVFIALGRAYEKERDFHPTTIIGAPTKIYDMRDLVDFGTDYFQTKNH"
     gene            complement(6762..7520)
                     /gene="map"
                     /locus_tag="IBJ56_001518"
     CDS             complement(6762..7520)
                     /gene="map"
                     /locus_tag="IBJ56_001518"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HAM3417774.1"
                     /translation="MITLKSRREIDEMKAAGKILADTHKELKKIIKPGITSWDLEVFT
                     EEFLRKNGATPEQKGFEGYEYAICASINDEICHGFPRKQKLNQGDIITVDMVVNYRGA
                     LADSAWTYAVGEVPDDVKHLMDVTHKALYLGIEQAQVGARVGDIGHAIQTYVESENLA
                     VVREFIGHGVGPTLHEKPDIPHYGTAGKGPRLKEGMVITVEPMVNMGAWKAKMDDNGW
                     TARTVDGSLSAQYEHTFAITKDGPEILTYQGEND"
     gene            7708..8154
                     /locus_tag="IBJ56_001519"
     CDS             7708..8154
                     /locus_tag="IBJ56_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HAM3417775.1"
                     /translation="MTKVMIVYASMTGNTQEIADILGEELEKYDIEVEIEECISVDPE
                     DLLEYDGALIGGYTYDDGQLPDEFVDFYEDMADVDFSGKVCASFGSGDTFYDEYCLTV
                     DLIETRLKEQGATVPVAGLKVDLDPDEEDVVRAESYAKTFVDVLKG"
     gene            8292..9524
                     /locus_tag="IBJ56_001520"
     CDS             8292..9524
                     /locus_tag="IBJ56_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HAM3417776.1"
                     /translation="MTVFSEKLEKYAELIVKVGVNVQPEQKVVIMAPVDAAPLVRLIS
                     KYAFEVGAEDVIMDWRDEELGALRYKNAPLRVFESAPVHRVAEKTELAKEGACFISIT
                     SEDPDLLNGVDSNKIATFQKTMGGAMSEFRELMQANVVSWTVVAAASQGWAAKVFPDL
                     TPAEQMETLWEAIFETTRINTENPVETWKNHDQTLAAKAESLNEKQFTSLHYTAPGTD
                     LTIGLPKNHLWVGAGSKNKKGHEFMANMPTEEVFCCADKLKVEGYVSSTKPLSYAGNI
                     IDDFKITFEKGRIVGVEAASGEEILKDLIATDEGSHYLGEVALVPDPSPISQSGILFY
                     NTLFDENASNHLAIGSAYAFNVKGGEEMSREELEAAGVNNSLTHVDFMIGSSEMDIDG
                     VTESGEVVPVFRKGDWAF"
     gene            9628..10887
                     /locus_tag="IBJ56_001521"
     CDS             9628..10887
                     /locus_tag="IBJ56_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3417777.1"
                     /translation="MKFSTWDINLKVRLFGEALLDISFWMVFPFLTIYFSESIGRELT
                     SLLLIISQVLAVFTALLGGYFADNFGRKRMMSISVIGEGFGFLVFAIGALHVVDSPYL
                     SFAGFAIASVFMAFYQPASQAMIADVVPPEHRTHIYSVFYMMINIAVVIGPILGSVLF
                     YNFTTETLLAIVCADLLLLFLLQKFGHETAPLLVNPDLQKEAVRKSIGAVLMEQLKNY
                     KIIFKDKIFFLYIVAGIIVSQSFMQLDLLFPLYIKEVIGASNLFAFHFTGEQLFGVIV
                     SINGFFVAALTVVVTRWMSHFREKFVFMNSSFLYAIAIFLFGISTGPWGAICAIILFS
                     FAELMTVGLQQTFVSQLAPEDKRAMYFSAAGLRYTLGKVIAPLAITLSTLIGYTGTFT
                     IIGILALISGLIYYYMYSEFEKQRQVS"
     gene            11105..12097
                     /locus_tag="IBJ56_001522"
     CDS             11105..12097
                     /locus_tag="IBJ56_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HAM3417778.1"
                     /translation="MFGTTTIGIDLGTANILVYSKEKGIILNEPSVVALNTNDGTVLA
                     IGQEAKEMIGKTPTSISAVRPMKDGVIADFDLTSGLLREIMRRISVSGVRKPNVVVCT
                     PTGATSVERRAISDAVRSTGARSVVLIEEPVAAAIGADLPVAEPVANVIVDIGGGTSE
                     IAIISYGGVVSSTSIRTGGDHMDEEIIQYIRKNYNLLIGQTTAERIKMELGYAPIEHV
                     TQTADIRGRDLLTGLPKTIQVSSTEIQSALAETLQRILEAIRNTLELCPPELSGDIVD
                     RGIILSGGGSLLQGFRDWLVQEIDVPVHMAPSPLESVAIGTGRSLVFADKLAKN"
     gene            12226..12297
                     /locus_tag="IBJ56_001523"
     tRNA            12226..12297
                     /locus_tag="IBJ56_001523"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12259..12261,aa:Arg,seq:cct)
BASE COUNT         3589 a         2339 c         2466 g         4009 t
ORIGIN      
        1 tgatgttggt tgtttttata ttatttttct aaaaaatgga ggttttttta atgaatgtta
       61 atgcggaaac agaagacgca actctccttc tcgatggttt acttcaaaac gtggcaataa
      121 ttcgttttga tactaataaa aaagtaactt atgctaatgc ccttttcgcg gaggcaatgg
      181 gatactcaga agaagaaatg ttgactttat cccacccgga cttatgcttt cctgatcttg
      241 tccaaagtgc aagctataaa gcaatgtgga caaatttgct tgctgggcaa aaatttcaaa
      301 ataaaattga acgaaaaaat gcacgcggtg aacgtgtttg gtttgaagcg acttatatcc
      361 cgattatacg tgaagatacg gtcgttggag tagccaaaat cgctacagat attacgagaa
      421 gagaagaaac ggttcatgac tttgcatctg gtttaaaaag catggctaca aatttaaaag
      481 aacattccag tgttggaaaa acgcgcagtg aagctctcct tgaactcgtg aaatcaatca
      541 cgaaagaatc caatgaaaat accgatacac ttcacgattt gcaaacagaa gcccaaaata
      601 ttcacggcat tattaataca attaacggta ttgcttctca gactaattta cttgccttaa
      661 atgcagcgat tgaggcagca cgtgctggtg acgccggacg tggatttagt gttgtagcgg
      721 aagaagttcg taaactttcg agtcgtgtag aagaagcaat taaagaagtg gaaaaaagtg
      781 tcaacggtat cacgcaagaa attaatacta tctcaagtgg tacggaacgt gtcgaagcaa
      841 aagtcgagga aagccaagaa gtgcttattt tatctttaga agactttagc caaattgaat
      901 ctgcctctac tgccttggat caaaatgccg gtgctttcac aaaaatgatt taaccgactg
      961 aaaaaaggag cgaagaaacc ttgaaactta ttggaaaaca tccttctggt cgtgccatta
     1021 ttatccgttt gaacaaccaa gaataccatt atgaaaccgc aaatagtttt ggaagtgcga
     1081 cttcattaac acgagcaaaa acagaagcta gagccgatag ttttacatct agtgaaatga
     1141 accaaggttt acatattggt aattggcact ggaaagaact tggatgaacg aaaatcccgt
     1201 ctataaaaat agacgggatt ttttatttac gcattcaatg cttgttctaa ttggtcttta
     1261 aaggcggttg ccacatcaaa tacagtaaca aattggaaat cgctcacgtt gtaatggacg
     1321 acaaacttat tatcccggtg gcgaaccata atggaagagc ggactttatc accaattgcg
     1381 tcccctgctt gggtttcgct ataaaaaacc cagtgagttg cttcgattgg atttgctgtt
     1441 ttttctgtaa ggtcgctttg aatgagttgt tttatttcat cacttaattc tggcgcgaat
     1501 tcattgtcga tgtagccgta ccaaatattt cggtagtact ttgcttcaaa ttcattcgtt
     1561 tcatcaaata gttttttcat gtttgtttcc tcctattagg tgttatttct attcgtgata
     1621 cctttttaag cgttcttcta atgtaccagc gtgtaattca aacagatgat tatcaaaatc
     1681 ataaaaataa atggaacgtc cttcaccttg gactctggga cgttctggtt tcatttccac
     1741 accgagagct ttaatccgct cagtatattc atccacttcc tcggattgaa tttggaaagc
     1801 aatatgattg taagttcgct cttgtaaaga atctccttcc ataatgcaaa tccacaaacc
     1861 agctattaga aaaaattttt ctttggaaag cgaaaatgtt ttgtcgccac tagaatagat
     1921 ttcttctgca ttaaaaatat tctgtaagaa agcagttgtt ttattcaaat ctttcacaat
     1981 taaagtgata tggcttaatc ctgaaatcat gtaccaccag tcctttattt atcttttaac
     2041 tgcaagagta ctacagtttc cacgtgagct gtttgcggga acatatcgac gggttgcata
     2101 tagcgaatgc gatatttctt cgcgagtaaa gctaagtcac gtgctaatgt ggatggatta
     2161 caggatacat aaacaagttg ttttgcttcc acatctagta atgattttat taggccttgg
     2221 tcacagccgc ttcttggtgg gtcaacgatg actgcgtctg ggcggaaacc ttcatttacc
     2281 cattttggta atacgtcttc tgctttccca acttcataat aaacattttc gatgccattc
     2341 ttctcggcgt ttcgtttagc gtcttcaatg gattctggaa taatatccat accacgaact
     2401 tcttttactt ttccggcaaa agcttggccg attgttccaa caccgcaata agcatctact
     2461 agtgtttcac tgcctgttag tacgagtgct ttttcgactt cttgataaag tcgctctgtt
     2521 tggaacgggt ttaattggaa aaaggcacga gcagatagat cgaattctag ttccattaat
     2581 ttctcttcaa tgctttcttt ccctgctaaa aggaacgttt cgtcaccgaa aataagtgag
     2641 gattttgctt gattcacgtt ttgcataatc gaagtgactt ccggaagagc tgcttcgatt
     2701 tctgcaagca tttcgcgttt tttaggtaac tttttactat ttgtaatgaa gacgagctgt
     2761 gtttcgccgg ttttcacgcc agtacgaacg acgatagttc ggacgatacc actgccagct
     2821 ttttcatcat aaattggcac gccgtatttt tctagtaagt cgcgaacaaa attcgttact
     2881 ttgatggtaa cgggttgttg gacgatacaa tcttcaattg gaacaagttg gtgagaattg
     2941 gcaccgaaaa ggcctgtttc gacttgacca ctgcctacca ttcttgtttg gaattggctt
     3001 ttattacggt aacgccatgg gtcttccatt ccgattgttg ggcggatttt taatttggtt
     3061 ggatcgattt ttgtatgttt ttcgattgat tgaataacaa tatctctttt tagttcaagt
     3121 tgggcgctat aggccacatg ttgcaactgg caaccaccac acgcctcgta aactgggcaa
     3181 ggtgcggtaa ctcggtttgg agatttttta cgaattttat ttaattttgc ttcggtgaaa
     3241 cgatcgcgaa ctttgaccgc ttcgacaact acttcttcac cggtaattgc gccaggtaca
     3301 aatacaactg cttttttaaa gtagccgatc ccttccccgt tgattcccat gcgtcgaata
     3361 gttagcggga atttttgtcc ttcttctact ggattttgat tcattatttt cctccatcat
     3421 tccaagtctt cattaatact aacaaaaaaa cagcagcttg tcagtagttt atggcatgat
     3481 ttcaagactt tcatcgacaa ggatgctttt ttcgacagaa cgaaccatcg aacagtattt
     3541 cggtgttaat tttaatgctt tttcaagtgc ttttggatcc aaggcagcac cggttatttt
     3601 aaaatgaaga tgtatcgcgc ttatacgatt ttcttcttct gggatgcgtt ccattgtggc
     3661 gtctacccat aagtcggtaa agtttactcg ttttttcttt aaaatgttcc gaaaaacaat
     3721 ggcgctacaa ctggcaatag acattaacat caaatccgct ggtgaatatt cggtcagttt
     3781 gtcatcgatt aaaaaacttc ctgtgtcaaa cccattttcg gtataaacta gctttaatgg
     3841 ttttgtcatg gttatccctc atttcttctc ttttatcgta caaaaaatct ccttattaag
     3901 caaattagta gtataatgaa cagatagtcg accaaaaaag gaggctactc atgttatgga
     3961 aggagtagga aataaagtga ttgttttagc aggaatgatt ggtgctggga aaagtagcta
     4021 tacagagcta atcgcaaatg aactcggaac taaggcattt tatgaaagca ttaaggataa
     4081 ccgcatcctt gaaatgtttt atgaagaccc aaaaagatgg gcttttgcct tacaaatata
     4141 ttttttaaat acccgctttc gtagtattaa agctgcgtta acggatcaaa ataatgtgct
     4201 tgatcggagc atatacgagg acgcgctttt tacgcaaatt aattttgaag aaggtaacat
     4261 ttcggagcct gagatggata cataccttga tttactcgac aatatgatgg aagaacttgc
     4321 ttatatgccg aaaaaagcgc ctgatttgtt gatttatttg cgaggaagtt tagacactgt
     4381 attgagccga attgctctcc gtggtcgtcc ttatgaacaa acctttgata atccaggttt
     4441 acttgactat tacaagcatc tgcatagtcg ttatgacagc tggtttgagt cttatgataa
     4501 gagtgaaacc cttgttatta atatcgacga aatagatatt aatcaaccaa atgacgcaga
     4561 ttatgtcatg caacttattc atgaaaaatt aaaacgctaa aacaggcttt ttgctgtttt
     4621 agcgtttttt taattgattt cgcctaattc ttttttcttt ttccgaatcg ccagtgtagc
     4681 gttaagctcc ccgccaatca tcaaaataat gccggtcaaa taaaaccata acattaaaat
     4741 aataattaca ccgatactgc catatgttgc tgaatagttg ccgaaattat ttacgtaata
     4801 cgcaaaacct agcgaagcaa ctgtccaacc gattgttgaa aaaagcgctc caggtagaac
     4861 actaatcaac gtactgcgcc ggtttggtgc gacccaatat aaaaaggtaa atacgacaaa
     4921 aataacgatg agtgtaacgg tccaacgaag attattccaa aagctaagaa agtcttccga
     4981 gaaattcaaa tgattaatta aaaacatccc tatttgttgt ccaaatacaa gtaatagcaa
     5041 ggttgcccct actgtcgcaa gcattgcgag tgtgaaaaac atcgataata atcgttgcac
     5101 gacgtagttt cgcttattgg ttacgccata cgctttattg agcgatttca tgaccgcatt
     5161 catgccattc gaggccgacc ataaagtcgc gataatcccg atagaaagta atccgccatt
     5221 tttctgcgtt agtaagttat ttaaattttc ttctaaaaag tccataatct ggtctggcgc
     5281 gaattcttta atcatattaa aaacggaatc tttatcaata tgaagatagg caagtaatgt
     5341 tgccgcgatt aagagcattg gaaaaatcga aaacagcata taataagcta actgtgctgc
     5401 atttcctgaa acatcatttc gacctactct cgcacttact gtttggccaa tttgaacaat
     5461 cccgtttttc tttgtatatt taactacttt tttccacact gataaggccc cctgttctag
     5521 tcattcgtct ggaagttttt cttctactat ggtaaaattt tgtctattag cttgaaagga
     5581 gcaaaaagat gaatcttgaa accccttcac aggaaaactt gaattttatg ttaaccgaaa
     5641 ttacaacgaa actaaaaatg gtgaatgttg gtgtttttga aaatctggag cttgactctg
     5701 ttgattataa cacacttatc gatatttatc agctaattaa acgtaaatcc aatttcagcc
     5761 cgcgtgagat gcaattattt gcagaagaat tacgccggat tcgcaaataa aacaaattcc
     5821 agccactttt tagtggtttt ttgtttggaa ataatcggta ccaaaatcca ctaaatcacg
     5881 catatcataa attttcgtcg gcgctccgat aatcgtcgtt gggtgaaagt cacgttcttt
     5941 ctcataagcg cgacctaacg cgataaacac ttcactatta taatcaattt cctgatactt
     6001 ctcccaaatg atttcgccat tttttagaaa agctgcctgg ttttcgatga gcggaaatac
     6061 attggagcgt tcttccgcta aatgaagcga tgtattgtta ttattatcta ccccgaacaa
     6121 gataattttc gcatcaagtt gatacatttt ccctagcggc gattcatctc ccatgctttt
     6181 cgcaagtggc tggttggcaa gaatttgttt tttatctttt ccccaagcac aaaacgaatg
     6241 gtatggatga aaacttcgct caacatctgg catagtacga aatgtttcgg caatgacacc
     6301 cattccacga gttggtgtta caagcggatc aaatggcggt gtttctctgc gaattatttt
     6361 ccaccaactt tcaggaactg gcggattttc ccactttgca ggatcactta attgacctgt
     6421 ttgagccggc attactatat tgcctgattc accaaccagt tcttgcaatg ccaaaataac
     6481 ggtaactgga ccaccgcaaa tccagtgtgc ttttgacatg gaggcatgaa aaataatcgt
     6541 atctcccttt ttaatacccg attcttgtag gtccgacacg attttttgtt ttgttgctgg
     6601 cttttttgtt cgccagatag ccattttttc tcccattgta tgtcaccgcc tctaaaaata
     6661 aagccagatg cctagaaaaa aacggcaaac taaaagcagc tgtgtgaaac ttgtgctttt
     6721 acttgcattc tgttctaaat gcatctggct aaatagttta attaatcgtt ttcgccttga
     6781 tacgttaaaa tttctggacc atcttttgtg attgcaaaag tatgttcata ttgcgcagac
     6841 aaagagccat caacagttct agcagtccag ccattatcgt ccattttggc tttccaagca
     6901 cccatattga ccattggttc cactgtaatt accatgcctt ctttcaagcg aggtcctttg
     6961 ccagctgtac cgtaatgagg gatatctggt ttttcatgta aagttggtcc aacgccgtga
     7021 ccaataaact cacgtacaac agcaagattt tcagattcta cgtatgtttg aatagcatga
     7081 ccaatatcgc caactcgtgc gccaacttgt gcttgttcaa tccctaaata aagtgcttta
     7141 tgcgttacat ccattaaatg tttcacatca tctggcactt cacctacggc ataagtccaa
     7201 gcagaatcag caagtgcacc gcgataattc acgaccatat ctactgtaat aatatcgcct
     7261 tggttaagct tttgtttgcg cgggaagcca tgacaaattt cgtcattaat acttgcacaa
     7321 atagcatatt cataaccttc aaagcctttt tgctctggag tcgcgccatt tttacgtaaa
     7381 aattcttctg taaatacttc taaatcccag ctagtaatac ctggtttaat aattttttta
     7441 agttctttat gcgtatcggc aaggattttc cctgctgctt tcatctcatc gatttcgcgt
     7501 cttgatttga gtgtgatcat cttttcattc cctcctaaaa tttccactat ttactattat
     7561 agctcgaaac cccttataaa taaagtaatc tggaaaaaag gttgcagttt ttctgaagac
     7621 atttataata gaatgtatca gttaaaaaat ggtgggctgg tttgtgccat tttaaacaat
     7681 aaaaaattca gaaaatggtg atgcaaaatg acaaaagtga tgatcgttta tgccagcatg
     7741 actggtaata cacaagaaat tgccgacatt ttaggtgaag aattagaaaa atacgatatc
     7801 gaagtagaaa ttgaagaatg tatttcagtt gatcctgaag atttactaga atatgatggc
     7861 gctctaatcg gtggttatac atacgatgat ggccagcttc ctgatgagtt cgttgatttt
     7921 tatgaagata tggcggacgt tgattttagc ggcaaagttt gtgcttcttt cggttccggc
     7981 gatacttttt atgatgaata ctgtttaaca gttgatttaa ttgaaactcg tctaaaagag
     8041 caaggtgcga ccgttcctgt tgctgggctt aaagtagacc ttgatccaga tgaagaagat
     8101 gttgttcgcg cagaaagtta cgcaaaaaca tttgtggatg tattaaaagg ataattcgaa
     8161 agcaagtcct ctttttcgga cttgcttttt tatttattta aaaatagcga aaacagtagc
     8221 gtagtggttg ctttacctca ttaattgaga tacaattctc gtattgaata aaaagattgg
     8281 agtgattaat tatgacagta tttagtgaaa agttagaaaa gtatgcagaa ttgattgtaa
     8341 aagttggggt aaatgtccaa cctgaacaga aagtggtaat tatggctcca gttgacgcgg
     8401 ctccacttgt tcgccttatt tccaaatatg cttttgaagt tggtgcagag gatgtcatta
     8461 tggattggcg cgatgaagaa ttaggcgcat tacgttacaa aaatgctcca ctacgcgttt
     8521 ttgaaagtgc tccggttcac cgtgttgcag aaaaaacaga acttgccaaa gaaggcgctt
     8581 gttttatctc catcacttcc gaagatccgg atttactaaa cggagtggat agcaacaaaa
     8641 ttgcgacatt ccagaaaaca atgggtggtg caatgagcga gtttcgcgag ttaatgcaag
     8701 caaatgttgt aagttggaca gttgttgcag cagcttcaca aggatgggca gcaaaagtat
     8761 tcccagattt aactccagca gaacaaatgg aaacactttg ggaagctatt tttgaaacaa
     8821 ctcgtatcaa tacagaaaac ccggtagaaa cttggaaaaa tcacgatcaa acacttgctg
     8881 caaaagcaga aagtttaaat gaaaaacaat ttacttcttt acattatacg gctcctggaa
     8941 cagaccttac aattggtctt ccaaaaaacc atctttgggt tggcgctggc agtaagaata
     9001 aaaaaggaca tgaatttatg gccaatatgc caacagaaga agtattctgt tgtgcggata
     9061 aactaaaagt ggaaggttat gtttctagta cgaaaccact tagttatgca ggaaatatta
     9121 tcgatgactt caaaatcact ttcgaaaaag gtcgtattgt aggtgtagaa gcagcatccg
     9181 gcgaagaaat tttgaaagat ttaatcgcga ctgatgaagg ctcccactat ttaggtgaag
     9241 tggcgctagt tccagaccct tcccctattt cccaatccgg cattttattc tacaatacac
     9301 tatttgatga gaatgcttct aaccacttag caattggtag tgcgtatgca tttaatgtta
     9361 aaggtggcga agaaatgtct cgtgaagagt tagaagcagc tggtgtgaac aatagtttaa
     9421 cacacgttga tttcatgatt ggttcttctg aaatggacat tgatggtgta accgaatctg
     9481 gtgaagttgt tcctgttttc cgtaaaggcg actgggcgtt ctaatccttt tttaaaactt
     9541 atgccttttg cgtaaaaccc ttgtagcttt tggctttcaa gggttttcgt ttgtttattt
     9601 tttacaaaag agagcgaggt gcattggatg aaatttagta catgggacat caatttaaaa
     9661 gtaaggcttt ttggggaagc actactcgat atttcttttt ggatggtctt cccctttcta
     9721 acgatttact tttcggaaag tattgggcgc gagctgacga gccttttgct gattatttcg
     9781 caagttttgg cggttttcac agctttgctt ggcggttatt ttgcggataa ctttggtcgt
     9841 aaacggatga tgagtatttc tgtcattgga gaaggatttg gttttcttgt ttttgcaata
     9901 ggtgcacttc atgttgtgga ttctccttac ttgagttttg ctggtttcgc gattgcgagt
     9961 gtttttatgg cgttttatca gccagcaagt caagcgatga ttgccgatgt ggttcctcct
    10021 gagcatcgga cgcatattta ttcggtgttc tatatgatga ttaatattgc ggtcgttatt
    10081 ggccccattc ttggttcggt tttattttat aatttcacga cagaaacact acttgcaatt
    10141 gtttgtgcgg atttattatt actattttta ttgcaaaaat ttggtcacga aacagcccct
    10201 cttttagtta atcctgattt acaaaaagaa gcggttcgaa aaagtattgg tgctgtttta
    10261 atggaacagc taaaaaacta taagattatt tttaaagaca agattttctt tctttatatt
    10321 gttgccggga ttattgtttc tcagtcgttt atgcaactgg atttactttt cccactctat
    10381 attaaagaag ttatcggtgc ctctaacttg ttcgcgtttc attttacagg tgagcaattg
    10441 ttcggggtta ttgtttctat taatggcttc tttgttgcag cgcttactgt cgttgtcact
    10501 cgctggatga gccattttag agaaaaattt gtctttatga attcttcttt tctctatgcg
    10561 attgcgattt tcttatttgg tatttcgaca ggaccgtggg gagcgatttg tgccattatt
    10621 ctctttagct tcgcggaact gatgactgtt ggcttgcaac aaacctttgt ttcacagtta
    10681 gctccagagg ataaacgggc gatgtacttc tctgctgctg gacttcgtta tacgctgggt
    10741 aaagtcattg ctccacttgc gattacactt tcgactttaa ttggctatac tgggacattt
    10801 actattattg gtattttagc gctcattagc gggctcattt attactatat gtattcagaa
    10861 tttgaaaaac agcggcaagt ttcctaataa aaaacggcta tctactctgg atagtcgttt
    10921 ttgtttgatt acttttttta cgatttattt acgaaacacc gaaaacacct gtcatatcgc
    10981 cattttaaat taccttttca tttcatccat gtttaaataa tgcttatatg gtgaaaaaag
    11041 tctatactgt tagttgtaca cctagaattt actcgctatt tttaatagaa agttaggtgt
    11101 gagaatgttt ggaacaacaa ctattggaat tgatttaggt actgcgaata ttttagttta
    11161 cagtaaagaa aaaggcatta tactgaatga accttctgtg gtcgcgctaa atacgaatga
    11221 tggaacggta cttgcgattg gccaggaagc aaaagagatg attggtaaaa cgccgacttc
    11281 gatttctgct gtaagaccaa tgaaggacgg tgttattgct gattttgatt taacgagcgg
    11341 acttttgcgc gagattatgc gccggatttc agttagtggt gtgagaaagc ccaatgtggt
    11401 cgtttgtacc ccaactggtg caacgtcagt cgagcgtcgc gctatttcag acgcggtaag
    11461 atcaactggt gctcgttcag tcgttttaat tgaagaacct gttgcagctg caattggtgc
    11521 tgatttacct gtcgctgagc ctgtcgctaa cgtaattgta gatattggtg gcggcacaag
    11581 tgagattgcg attatttcat acggcggtgt ggtttcaagc acttcgattc gcacaggtgg
    11641 cgatcatatg gatgaagaaa tcattcaata catccgcaaa aattacaacc ttttaatcgg
    11701 tcaaacaaca gcagaacgaa ttaaaatgga gcttggttat gcgccgatcg aacacgtaac
    11761 acaaactgcg gatatccgtg gtcgcgattt gcttactggc ttaccaaaaa caatccaagt
    11821 aagctctacg gaaatccaaa gcgctttagc tgaaacatta caacgtatat tagaagctat
    11881 tcggaatacg cttgaacttt gcccaccaga attaagtggt gatattgtcg atcgcggcat
    11941 tattttaagt ggtggcggct ccctacttca aggtttccgc gactggcttg tacaagaaat
    12001 agatgtccct gtacatatgg ctccaagtcc tttggaatcc gttgcaattg gcacaggtag
    12061 atccctcgtt tttgcagata aattagctaa aaattaattg tattaagcat ctggtcgcat
    12121 ggtaaccctt gcagccagat gcttctttat cttgctgaaa ccccttattt ctggtaaact
    12181 tatttctggt gtctggcttt ctggagtcag ataattttat aataagccca tatagttaaa
    12241 cggatataac aagcccctcc taagggctag ttcgtggttc gattccgcgt atgggcgctc
    12301 agaaaaatcc gaaagcactt gataaatcaa gactttcgga ttttttatcg ttcttatttc
    12361 aaaactttat tcatacataa aaagttacat cttttttctt cgc
//
LOCUS       DABQVC010000080        12285 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.080,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000080 DABQVC010000000
VERSION     DABQVC010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12285
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.080"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            135..440
                     /locus_tag="IBJ56_001524"
     CDS             135..440
                     /locus_tag="IBJ56_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAM3417779.1"
                     /translation="MENAKQSLDEETLFSVTQIFKALSDPTRVQILNLLQDREYSVNE
                     IARTLAFNQTTVSHQLRFLKNLRLVKSRREGTTIYYMQDDNHVLELLTQAIRHVHHH"
     gene            546..932
                     /locus_tag="IBJ56_001525"
     CDS             546..932
                     /locus_tag="IBJ56_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417780.1"
                     /translation="MKKLSPMQKFIVIIGIIVMIIIAILAVVWNSNLTAVIGLSVVQF
                     IIIQFVCYVGIYSHMKVGTARGTKLFSWGILTTLLFSAIIFIFATDNFRTYSAAMIAL
                     IGYAAALMMREIENTNPANKKQKREE"
     gene            954..1601
                     /locus_tag="IBJ56_001526"
     CDS             954..1601
                     /locus_tag="IBJ56_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HAM3417781.1"
                     /translation="MGIHQYFQSLSDLENIYRCPGKFKYQEHSVAEHSYKVTSIAQFF
                     GAVEEEAGNEVNWRALYEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKN
                     FIEREIPETYQPIYRHLLKEGKDSTLEGKILAISDKVDLLYESFGEIQKGNPENIFVE
                     IYSEALATIYQYREMASVKYFLKEILPDMLAEKGIEKTELPQLTTEITTKALRDA"
     gene            1622..1861
                     /locus_tag="IBJ56_001527"
     CDS             1622..1861
                     /locus_tag="IBJ56_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbA family protein"
                     /protein_id="HAM3417782.1"
                     /translation="MDQIISALIFPCLLVILFARITYNRYVALLLMVILIAASAKLGY
                     TSSMWLIIIDAFSMTIGFVLATYMLRRLKKSGSDF"
     gene            2112..4088
                     /gene="uvrB"
                     /locus_tag="IBJ56_001528"
     CDS             2112..4088
                     /gene="uvrB"
                     /locus_tag="IBJ56_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HAM3417783.1"
                     /translation="MKDKFELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTG
                     KTFTVSNVIQEVNKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYV
                     PQSDTYIEKDASINDEIDKLRHSATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVS
                     LRVGMEISRDQLLRKLVDIQYDRNDIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFG
                     DEIERIREVDALTGEIIGEREHVSIFPASHFVTRPDIMKKAIVNIKAELEDRLQVLRA
                     DNKLLEAQRLEQRTNYDLEMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQ
                     MVIDESHVTMPQIRGMFNGDQARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFI
                     SATPGPYELEKNPDVIEQIIRPTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLI
                     TTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREG
                     IDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVIMYADKMTDSMRNSIGE
                     TERRRKIQIEYNEKHGITPKTIKKEIRGIIAATSAADEREAVKQHDLSKMSKKERDVF
                     IEGMEHEMKEAAKALDFERAAELRDALLEIKAEG"
     gene            4096..6966
                     /gene="uvrA"
                     /locus_tag="IBJ56_001529"
     CDS             4096..6966
                     /gene="uvrA"
                     /locus_tag="IBJ56_001529"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HAM3417784.1"
                     /translation="MDKEKIVIQGARAHNLKNIDVEIPRDKLVVMTGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLGQMDKPDVDLIEGLSPAISIDQKTTSRNPRSTVGT
                     VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLEYPEKTRIQIMAPIVSGK
                     KGTHKKTIEEIKKEGYVRIRVDGEIYDINDEIEIEKNKKHSIEIIIDRIVIKEGINTR
                     LYDSIEAALRLADGYAVVDIMGDKELLFSEHYACPYCGFSVGELEPRMFSFNSPFGAC
                     PTCDGLGTKLEVDVDTVIPDRSLSLNEGAIIPWRPISSQYYPQMLASACKEFGIDMDT
                     PLEKLTKEELDIILNGSKDKEFYFEYKNDFGMTRETWIPFEGILPNIERRYRETNSDF
                     TRDQMAQYMTDLPCPSCKGYRLKEETLSVKVNNHHIGQISEFSINEALDFFDGLELSE
                     KETQIAAPIFKEVRARLGFLKNVGLDYLTMSRAAGTLSGGEAQRIRLATQIGSRLTGV
                     LYILDEPSIGLHQRDNDRLISTLQSMRDIGNTLIVVEHDEDTMMAADYLIDIGPGAGE
                     HGGRIVAAGTPEEVAKNKNSITGDYLSGKKFIPVPAKRRKGNGLELEIIGAKANNLKN
                     VNAKIPLATFSCVTGVSGSGKSSLVNEVLRKALARKLNRNHAKPGEHKEIKGIENLEK
                     IINIDQSPIGRTPRSNPATYTGAFDDIRDLFASTNEAKVRGYKKGRFSFNVKGGRCEA
                     CKGDGIIKIEMHFLPDVYVPCEVCHGKRYNGETLDIRYKGKNIAEVLEMTVEEGLEYF
                     TNQPRIARKLQTIVDVGLGYIRLGQPATTLSGGEAQRVKLASELHKRSNGKSFYILDE
                     PTTGLHADDIGRLLKVLQRLVEENGDTVLVIEHNLDVIKQADYLIDLGPEGGDGGGQI
                     IATGTPEKIARSKKSYTGKYLKPILERDKERTEERITTAKKK"
     gene            7175..8437
                     /locus_tag="IBJ56_001530"
     CDS             7175..8437
                     /locus_tag="IBJ56_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 domain-containing protein"
                     /protein_id="HAM3417785.1"
                     /translation="MENERKRILELVKQGIISTEEALTLLENISKKEGKTAAKENIRR
                     SAAPREEEQVEEGTKEEPSYDYSKGWNNQGNPYTPPKSRKRRPEPTPENHERDEEEGG
                     ENSSKDREDSMRNMVNDLSQAGEKIGSFLNSAFKQVKDMPFPFLTSTKIERDFIYHDT
                     TLSILEFEIANGNIEFKPSDSNDIKVHAMIKLFKEYPEDEALKIFFDKTTLRVDEETL
                     RFESKSKQIVTNLTVYLPRREYDYVSVKMLNGNFHMDELSGRDLFVKTTNGNISIGTL
                     NATLAEIESINGNVRIQNGEIRDVALKTFNGNVAVKGNYYSTNLQTKNGNVNYQLTGN
                     EATFLKAKTGAGNIDVVVPAAIGVDGRFHTNLGKLLLDLKDAEILESKTESVSKSIIF
                     TKLPDAADSSLKIEAEATTGSVKIRDVK"
     gene            8504..9715
                     /locus_tag="IBJ56_001531"
     CDS             8504..9715
                     /locus_tag="IBJ56_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HAM3417786.1"
                     /translation="MDKKLRRSRVDRKVGGVFGGLAEFLGIDATLLRLIYIIITIITM
                     KTGIAIIAYIVALFVIPSSDTSNEEVLERHRRRVEEKRNRHLGRNQARQEVREAMRNS
                     HHHRRPRPENAEPIHHGARKKEARPRPVREFNFDNATFRSFTIRVATGDVIIRSWDKE
                     QMKIRAVLAVHEKARSIRQLSEEKLWDYFFSQTMLDISPDNFTFESKNELLKTDLVVT
                     IPKRLYEQVKIQLLNGNLKYDDTAAEDAIIKTRHGDIRSSGASGKFLSTESADGEIFF
                     KRSTVENVDMSTAKGDIALQGSFLTTIAKAAQGDVEYILENDTSSASDLEAPNGDIRI
                     QIPPTWNVDGTLGTKKEKIYFDLKNAKIWDDAERTFVFTQNAEEISMATLQAKVGNGI
                     IKVSELETKNV"
     gene            9739..9939
                     /locus_tag="IBJ56_001532"
     CDS             9739..9939
                     /locus_tag="IBJ56_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HAM3417787.1"
                     /translation="MKKLYKSSSQKMIAGVCGGLAEYFGIEVTIIRLLWAGAVLFFGT
                     GILLYILAAIIMPTATPESEWE"
     gene            9948..10301
                     /locus_tag="IBJ56_001533"
     CDS             9948..10301
                     /locus_tag="IBJ56_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HAM3417788.1"
                     /translation="MRWIIGVIINSVLFVALSGFFTSFHVDGFTTALLASFILAILNM
                     LIRPILLLLTLPINIFTLGLFTFVVNAIMLEMTTFFIGDSFQIDGFGTALILAAIMAF
                     ANMIINSVLWGNKEK"
     gene            10488..11426
                     /locus_tag="IBJ56_001534"
     CDS             10488..11426
                     /locus_tag="IBJ56_001534"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HAM3417789.1"
                     /translation="MTKSVTVKDLKERLNLELICSETGLERPISTSDLSRPGLELTGF
                     FSYYPEDRVQLFGMTEISFSEGMEPEERLKRYKQMCTKRTPAFVISRNLEVPKELVAA
                     AKEADIPVLRSRLKTTRLSVYITNYLESRLAPVISMHGVLVDIYGLGVLITGSSGVGK
                     SETALELVKRGHRLVADDNVEIRQEDEMTLIGSSPAIIEHLLEIRGLGIINVMTLFGA
                     GAVRSSKKITIVVHLENWDPDKHYDRVGLDQEKTKIFDMDIPKITVPVRPGRNLSVII
                     EVAAMNFRLKNMGYNAAEQFTQDLNNLIGHNSSMND"
     gene            11512..>12285
                     /locus_tag="IBJ56_001535"
     CDS             11512..>12285
                     /locus_tag="IBJ56_001535"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HAM3417790.1"
                     /translation="MGNGVQPLDPVAIQIGSISVKWYGVIIASAVVIALLLALSEANK
                     RKMDKEIIVDLLIWAIPISIISARIYYVIFEWDFYKNNLGEIVKIWHGGIAIYGALIG
                     AVLTAIIFSRIKKISFWQLADVVAPSLIIAQAIGRWGNFMNQEAHGAETTRSFLESLH
                     LPDFIINQMYIDGAYYQPTFLYESLWNVLGFIVLLIIRRTKIRRGELFLGYVIWYSFG
                     RFFIEGMRTDSLMWGDFRVSQVLSLLLIVLSIGIIIYRRM"
BASE COUNT         4110 a         2067 c         2550 g         3558 t
ORIGIN      
        1 ttgaaacaga gaaaatcttg tttttgctca tatttaatca ttttttaata gatgtgttgt
       61 taaacttgcg gaatcattcc tatttaagta tcatatgagt atatgaacat atatggaaaa
      121 tggagtgata tttaatggaa aacgcaaaac aatctttaga tgaagaaacg ctatttagtg
      181 ttacgcagat atttaaggcg ctttctgatc caacgcgtgt gcagatttta aatttgcttc
      241 aagaccgcga atactctgtg aatgaaattg cgcgaacact tgcgtttaac cagacaactg
      301 tttctcacca gctgcgtttt ttaaaaaact taagacttgt gaaatcaaga cgtgaaggca
      361 cgacgattta ttatatgcaa gatgataatc acgtattaga attactcaca caagcaattc
      421 gccacgtgca ccatcattaa gtaagaacgc tcagaaaacc ttttaggaat gatgggtgtt
      481 ttttatccca aataaacaga gattatggta aagtaagtaa caaataaaag cttggaggaa
      541 gtattttgaa gaaattatca ccaatgcaga agttcattgt tattataggg attattgtga
      601 tgattattat tgcgatttta gcagttgttt ggaatagtaa tctcacagca gttattggtt
      661 tatctgttgt gcaatttatt atcattcagt tcgtttgtta tgttggtatt tattcgcata
      721 tgaaagtcgg aacggcgcgc ggaacaaagt tgtttagctg gggaatactg acgacacttt
      781 tattttcagc aattattttt atttttgcta ccgataattt tagaacttac tcagccgcaa
      841 tgattgcttt aattggttat gctgcggcgc tgatgatgcg tgaaatcgaa aacactaatc
      901 ctgccaataa aaaacaaaaa cgtgaagaat aaaacgaagg atggagggat aatatgggaa
      961 ttcatcaata tttccaaagt ttatcagatt tagaaaacat ttatcgttgc ccaggaaaat
     1021 ttaaatatca agagcactct gttgcagaac attcatataa agttacatcc attgctcaat
     1081 ttttcggcgc tgtagaggaa gaagctggga atgaagtgaa ttggcgtgca ctatacgaaa
     1141 aagcgctaaa ccacgattat tcagagcttt tcatcgggga tattaaaacg cctgtgaaat
     1201 atgcaacgac agaactccgc gaaatgcttt cagaagtaga agaaagcatg acaaaaaatt
     1261 ttattgaacg agaaatccca gaaacgtatc aaccaattta tcgtcatttg ctaaaagaag
     1321 gtaaagacag tacgttggaa gggaaaatcc tcgcaatttc tgataaagta gacctgttat
     1381 atgaatcctt tggtgaaatt caaaaaggaa atccagaaaa tatttttgtg gagatttata
     1441 gtgaagcact tgcaaccatt tatcagtacc gagaaatggc tagcgtgaag tattttttaa
     1501 aagaaatttt accagatatg cttgctgaaa aaggtatcga aaaaacagaa ttaccacagc
     1561 ttacaacgga aataacgacc aaagcattgc gagacgcgta aaaaaggggg aggaaagtaa
     1621 gatggatcaa attatatctg cacttatttt cccttgtctc cttgttattc tttttgcgag
     1681 aatcacctat aatcgttatg tcgctttgct tttgatggtg attttgatcg ccgcttctgc
     1741 caagttaggt tatacgagtt ctatgtggct aattattatt gatgcttttt caatgaccat
     1801 tggttttgtg cttgcaacat atatgctgcg acgtttaaag aagagtggca gtgattttta
     1861 acaaagcaaa tatataggta gaaaagcgta aaagtgataa aataaagaaa agcgtaatca
     1921 acaggttgcg ttttttattt ttcaacaaat gcgaaaatat gttcggtttt tgctaggcta
     1981 attaaaatat ttatgataaa atagaaacat taacggatct gaaaaatccg ctttttgctt
     2041 tgctggactt ttcacaaata aagcttttca gataccagaa tcggaccgat aaagaatagg
     2101 gggaatccga gttgaaggat aaatttgagt tagtttctaa gtatagccca caaggagacc
     2161 aacctagagc gatagaacaa ttagttgcgg gattaaaaaa aggcttgaaa caccaaactt
     2221 tacttggtgc aaccggtaca gggaaaactt ttaccgtatc caacgtgatt caggaagtaa
     2281 ataagccaac acttgtcatg gcccacaata agacgttagc gggacagctg tatagcgagt
     2341 ttaaagaatt tttcccaaat aatgctgtag aatattttgt cagttactat gattactatc
     2401 aaccagaagc ctatgttccg caaagcgaca cgtatatcga aaaagatgca agtatcaatg
     2461 atgaaattga taagcttcgt cactctgcta ccgctgcgct ttttgaacgt cgtgatgtaa
     2521 ttatcattgc gagtgtatcg tgtatttatg gcttaggttc gccgattgaa tatggagaga
     2581 tgctcgtttc gcttcgtgtt ggtatggaaa ttagccgtga tcagctactg cgtaaattag
     2641 tagacattca atatgatcga aatgatatag attttcaacg tgggcgcttc cgtgttcgcg
     2701 gcgatgttgt cgaaattttc ccggcatcaa gagacgagca ctgcatgagg attgaatttt
     2761 tcggtgatga aattgaacgt attagagagg tagatgcact tactggcgaa attattggag
     2821 aaagagaaca tgtttccatt ttcccggcat ctcactttgt taccagacct gatattatga
     2881 aaaaagcaat tgttaatata aaagcggaac tcgaagaccg ccttcaagtt ttacgtgcag
     2941 ataataaatt actcgaagca caacgtcttg aacaacggac gaattatgat ttagaaatga
     3001 tggaagaaat gggttattgc tctggtattg agaactattc tagacattta tcccttcgtc
     3061 cagcgggagt tacaccatac acgttactcg attacttccc agacgatttc caaatggtaa
     3121 ttgatgagtc acacgttacg atgccacaaa tccgtggtat gtttaacggt gaccaagcca
     3181 gaaaacaaat gctagttgat catggtttta gactaccaag tgctttagat aaccgtccgc
     3241 taagattaga agaatttgaa aaacatatca atcaaattat gttcatttcc gccacaccag
     3301 gcccttatga actagaaaaa aatccggatg tcattgaaca aatcatccga ccaaccggct
     3361 tgctagatcc aatcgtagaa attcgcccga ttcaaggaca aatcgatgac ttaatggatg
     3421 agattaatga tcgtgtcgag aaaaacgaac gtgttttaat caccacttta acgaaaaaaa
     3481 tgtcagagga tttgaccaat tatctcaaag aagctggtgt taaagtacaa tatctccact
     3541 cggaagtgaa gacgttagag cgaatcgaaa tcattcgcga cctccgactt ggtgtgtatg
     3601 atgttatcgt tggaattaat ttacttcgcg aaggaatcga tttacctgaa gtatctcttg
     3661 tcgctatttt agatgcggac aaagaaggat tccttcgttc cgagcgttcc ttaattcaaa
     3721 caatgggtcg agccgctcgt aatgaaaacg gtcgagtaat catgtatgct gataaaatga
     3781 ccgattcgat gcgcaattct attggcgaaa cagaacgccg tcgtaaaatc caaattgaat
     3841 ataatgaaaa acatggcatt acgccaaaaa caatcaaaaa agaaattcgt ggtatcatcg
     3901 cagcgacttc tgccgcagat gaaagagaag cagtgaagca acatgattta agcaaaatgt
     3961 ctaagaaaga acgcgatgtg ttcattgaag gtatggaaca tgaaatgaaa gaagcagcca
     4021 aagcacttga tttcgaacgt gctgctgaac ttcgcgatgc tttactggaa ataaaagcgg
     4081 aaggatgaag cgaaattgga taaagagaaa atagtaattc agggtgcaag agcccataac
     4141 ttaaaaaaca ttgatgtaga gattcctaga gacaaattag tagttatgac tggactttca
     4201 ggttcaggta aatcttcgct tgcttttgat acgatttacg cagaaggaca aagacgttat
     4261 gtagagtctt tgtccgcata tgcgcgccaa tttttaggcc aaatggataa accagatgta
     4321 gatttaattg aaggattaag ccctgccatt tcgattgatc aaaaaacaac aagccgtaat
     4381 ccacgttcaa ctgttggtac tgtcacagaa atccatgact atttgcgctt actttatgct
     4441 cgtgttgggc atccagtttg tccaaatcac ggtattgaaa tcacttccca aacaatcgaa
     4501 caaatggtgg atcgcgttct agaatatcca gaaaaaacac gtattcaaat aatggctcca
     4561 atcgtttctg gtaaaaaagg aacccataag aaaactattg aggaaataaa aaaagaaggc
     4621 tatgttcgaa ttcgtgttga tggagaaatt tatgatatca atgacgaaat tgaaatcgag
     4681 aagaataaaa agcattctat tgaaatcatt attgatcgca ttgtgattaa agaaggtatc
     4741 aatactcgtt tgtatgactc cattgaagcg gctcttcgtt tagctgatgg ttatgcggtt
     4801 gttgatataa tgggcgataa agaattatta tttagtgaac actatgcgtg cccttattgt
     4861 gggttttccg ttggtgaatt agaaccaaga atgttctctt tcaatagccc atttggcgct
     4921 tgtccaacat gtgatggact tggcactaaa cttgaagtcg atgtcgacac agttattcca
     4981 gatagaagtc tgtctctaaa tgaaggtgct attattcctt ggcgcccaat tagctcgcaa
     5041 tactatccac aaatgctagc ttcggcttgt aaagagttcg gaatagatat ggatacacct
     5101 ttggagaaac taacgaaaga agaattagat attattttaa atggatcaaa agacaaagaa
     5161 ttctacttcg aatacaaaaa tgatttcgga atgacacgcg aaacgtggat tccttttgaa
     5221 gggatacttc caaatatcga acgccgctat cgtgagacaa attccgactt tacgcgtgat
     5281 caaatggcgc aatatatgac tgatttacca tgtccatctt gtaaaggtta tcgtctaaaa
     5341 gaagaaacac tttctgttaa agtaaacaat catcatattg gccaaatcag tgagttttct
     5401 attaatgaag cactagattt ctttgatggc ttagaactct ctgaaaaaga aacacaaatt
     5461 gcagcgccga ttttcaaaga agttcgtgct agactaggct tcttaaaaaa tgttgggctc
     5521 gactatctaa caatgagccg tgcagctggg acgctatctg gtggtgaggc gcagcgaatt
     5581 agacttgcta cacaaatcgg ttccagactt actggggtac tttatattct agatgaacct
     5641 tccatcggtc ttcatcaacg agataatgac cgtttaatca gcacactcca aagtatgcgt
     5701 gacattggaa acacgcttat tgtcgttgag catgacgaag atacgatgat ggccgcagat
     5761 tatcttattg atattggtcc aggtgcaggg gaacacggtg gacgaattgt tgcagccgga
     5821 actccagaag aagttgccaa aaataaaaat tccatcactg gtgactatct ttcaggtaaa
     5881 aaatttattc cagttcctgc taaacgtaga aaaggtaacg gactagaatt agaaattatt
     5941 ggtgctaaag caaataatct caaaaacgta aatgcaaaaa ttccactagc tactttttct
     6001 tgtgtaactg gagtttcagg ttcaggtaaa agttcgctag tgaatgaagt attacgaaaa
     6061 gcattagcga gaaaactaaa tagaaaccac gcaaaaccag gtgaacataa agaaataaaa
     6121 ggtatcgaaa acctagaaaa aatcatcaat atagatcaat caccaatcgg aagaacaccg
     6181 agatcgaatc cagctactta tacaggggct ttcgatgata ttcgtgacct ttttgcaagc
     6241 acaaatgaag ccaaagttcg cggttataaa aaaggtcgct ttagttttaa cgtaaaaggt
     6301 ggacgttgtg aggcgtgtaa aggcgacgga atcatcaaaa ttgaaatgca tttcttgccc
     6361 gatgtatatg taccctgtga agtttgtcat ggaaaacgat acaatggcga aacgttagat
     6421 attcgttaca aaggcaaaaa tattgctgaa gtattagaga tgactgtaga agaaggtcta
     6481 gaatatttca ctaaccaacc gagaattgca cgtaaactgc aaacgattgt ggatgttgga
     6541 cttggttata ttcgacttgg gcaacctgct acgactcttt ctggtggtga agcacagcgt
     6601 gttaagctag cttcggaact tcacaagcgt agtaacggaa aatctttcta tattctggat
     6661 gaaccaacga ccgggctcca cgcagatgat attggtcgtt tactcaaagt attacaaaga
     6721 cttgtagaag aaaatggcga cacagtactt gttattgagc ataaccttga cgtaattaaa
     6781 caagcggatt acttgattga tttaggacca gaaggcggcg atggtggcgg tcaaattatt
     6841 gcaaccggca cacctgaaaa aatcgctcgc tcgaaaaaat catatacagg taaatacttg
     6901 aaaccaattt tagaacgcga taaagaacgc acagaagaac gaatcacaac agccaagaaa
     6961 aaataatcaa aaccccgctt atgcaaaata taagcggggt ttttaatagt ccttaagaac
     7021 aaaccaccca aagtccaaac aaataatcat cctctggttg tatgacagaa attatatttt
     7081 ccttcataat agagtcatag ataaaacaga tatgtcactt gcatgtgaaa gcaagcctaa
     7141 aatagtttag cctaaattat aggaggaaat gaaaatggaa aatgaacgta aacgtattct
     7201 cgaattagta aaacaaggta ttatatccac tgaagaagcc cttactctac ttgaaaatat
     7261 ttccaaaaaa gaaggtaaaa cagcagcaaa agaaaatatt cgtcggtctg cggctccgag
     7321 agaagaagaa caagtcgaag aaggaacaaa agaagaacca tcatacgatt acagtaaagg
     7381 ttggaacaat caaggaaacc cttatacacc tccaaaaagt cgtaaaagac gcccagaacc
     7441 gactccagaa aatcatgaaa gagacgaaga agagggcggc gaaaattctt ctaaagatcg
     7501 tgaagactcc atgcgcaata tggttaatga tttatcccaa gcgggtgaaa aaatcggttc
     7561 tttcctaaat agtgcattta aacaagtgaa agatatgcca ttcccgttct taacttcaac
     7621 gaaaatcgaa cgtgatttca tttatcatga cacaacactt tctattttag aatttgaaat
     7681 tgctaatggt aatattgaat ttaaaccatc tgattcgaac gatatcaaag ttcacgcgat
     7741 gattaaacta ttcaaagaat atccagaaga tgaagcactt aaaatcttct ttgataaaac
     7801 aactttacgt gtagatgaag aaactttacg ttttgagtct aaatcaaaac aaatcgttac
     7861 aaacttaact gtatacttgc ctcgtcgtga gtacgattat gtttccgtta aaatgcttaa
     7921 tggtaacttc catatggatg aattatccgg tcgtgattta tttgtgaaaa caaccaatgg
     7981 taatattagt attggtactt taaatgctac tttggcagaa attgagtcaa ttaatggtaa
     8041 tgttcgtatc caaaatggtg aaattcgtga tgttgcactg aaaacattca acggtaacgt
     8101 agcagtaaaa ggtaattatt actccaccaa tttacaaact aaaaatggta atgtaaatta
     8161 tcaactaact ggaaatgaag ctactttctt aaaagcaaaa actggtgcag gtaatatcga
     8221 tgtggttgta cccgcagcaa ttggtgtaga tggccgtttc cacacaaact taggtaaatt
     8281 acttttagat ttaaaagatg ccgaaattct tgaatctaaa acagagtccg taagtaaatc
     8341 aattattttc actaaactac cagatgcagc tgattcttcc ttgaaaatcg aagcagaagc
     8401 aactactggc tccgtaaaaa ttcgcgatgt aaaataatta aacgaaatct agcgccggaa
     8461 tgcgcgctag attttacata gatataagaa aggaagagct aacatggata aaaaattaag
     8521 aagatcaaga gtggaccgga aagtcggcgg tgtgtttggt ggactagctg agtttctagg
     8581 gatagatgcc acacttctgc gactaattta tattatcatc accattatta cgatgaaaac
     8641 cggtattgcg attatcgctt atatagtagc cttgtttgtg attccttctt ccgatacaag
     8701 taatgaagaa gtacttgaac ggcatcgtcg ccgcgtggag gaaaaaagaa atcgtcacct
     8761 aggacgtaat caagctagac aggaagtgcg agaagcaatg agaaatagtc atcatcatag
     8821 aagaccaaga ccagaaaatg ctgaaccaat tcatcacggc gcaaggaaga aagaagctcg
     8881 ccctcgtcca gtacgagaat tcaattttga taatgcgact ttccgttcct ttactattag
     8941 agtggcgacc ggggacgtta ttatccgttc ttgggacaaa gaacaaatga aaatccgtgc
     9001 agtactagct gtacatgaaa aagcgcgatc tattcgtcaa ttaagcgaag aaaaactatg
     9061 ggattacttc tttagtcaaa cgatgcttga tatttctccg gacaatttca ctttcgaatc
     9121 aaaaaatgaa cttttaaaaa ccgatttagt tgttactatt ccaaaacgtt tatacgagca
     9181 agtgaaaatt cagctcttaa atggtaattt gaaatatgac gatacagctg ctgaagatgc
     9241 tattattaaa acacgtcacg gtgatattcg ctcatcagga gctagtggta aatttttgag
     9301 cacagaatca gcggatggag aaattttctt caaacgtagc acagtagaga atgtagatat
     9361 gtctactgct aaaggagata ttgcgcttca aggtagcttt cttacaacga ttgctaaagc
     9421 tgcacaaggg gacgttgagt atatactcga aaatgatact tcctcggcct cagatttaga
     9481 agcaccaaat ggcgatattc gaattcaaat tccgccaaca tggaatgtcg atggaacact
     9541 tggaactaaa aaagaaaaaa tctattttga cttaaaaaat gcaaaaattt gggatgacgc
     9601 agaaagaact tttgtcttca ctcaaaacgc agaagaaata agcatggcga cacttcaagc
     9661 aaaagtagga aatggaatta ttaaagtttc tgaactggaa acaaagaacg tttaataaaa
     9721 tgaaaggaag ggaaaacaat gaaaaagtta tataaatctt catcacaaaa aatgattgct
     9781 ggtgtctgtg gtgggcttgc agaatacttt ggcattgaag taaccatcat tcgtttactt
     9841 tgggctggag cagttctatt ctttggtact gggattttac tgtatattct agctgcgatt
     9901 attatgccaa cagcaacacc tgaatcagaa tgggagtgaa ctaaaacatg cgttggatta
     9961 taggcgtaat tattaactcg gtgcttttcg tagctttatc aggattcttt acaagttttc
    10021 atgtagatgg attcacgaca gcgctactag cgagttttat attagcaatt ctaaatatgc
    10081 taattagacc tattttactc cttttaacat taccaattaa tattttcaca cttggacttt
    10141 tcacctttgt tgtgaatgca attatgcttg aaatgactac cttctttatt ggagattctt
    10201 tccaaattga tggttttgga acagcgttaa ttctcgcagc aattatggca ttcgcaaaca
    10261 tgattattaa ttccgtttta tggggtaaca aagaaaaata aacattccag ctacattttg
    10321 aggctaaaaa tagtctttta aatgtagctg gttttgctat gtagagccat ttgagtagaa
    10381 agaggtagct tgattccttc taaagtgcta aaatgagaag gagctttcta aataatattt
    10441 tgtagcgaac agtaatggac ttttataatt catttggagg tacttgcatg acaaaatcgg
    10501 ttacggtaaa ggatttaaag gaacgactta atttagagct aatttgttcg gaaacgggac
    10561 ttgaacggcc aatttcaaca agtgacttat ctcggccggg gctggaactt actgggtttt
    10621 tctcttatta tccagaagat cgtgtgcaac tttttggcat gactgaaata tcgttttctg
    10681 aaggaatgga acctgaagaa cgtctcaaaa gatataaaca aatgtgtacg aagcggacgc
    10741 ctgcttttgt gatttctaga aatttagaag tgccgaaaga attagtagca gcagcgaaag
    10801 aagctgatat tccggtatta cgttcacgac ttaaaacgac acgtttatct gtttatatta
    10861 cgaattactt agaaagcaga cttgcgccag ttatttcgat gcatggtgtt ctagtggata
    10921 tatatggttt aggtgtgttg attacgggga gcagtggtgt tggtaaaagt gaaacagcac
    10981 tggagcttgt aaaacgcggg catagactcg tagcagatga taacgtagaa attcgccaag
    11041 aggatgaaat gacgttaatc ggttcttctc cagcgattat tgaacattta ctcgagattc
    11101 gcgggttggg gattattaat gtaatgactt tatttggagc aggcgctgtt cgttctagta
    11161 aaaaaattac tatcgttgtg caccttgaaa attgggatcc tgataagcat tatgatcgtg
    11221 tcggattaga ccaagaaaag acaaaaatct ttgatatgga tattccgaaa attacggtgc
    11281 ctgttcgacc gggacgaaat ttatctgtta ttattgaggt agcggcaatg aatttccgat
    11341 taaagaatat ggggtacaac gcggcagagc aatttacaca agacctgaat aatttaatag
    11401 gtcataacag cagtatgaat gattaaataa atagtgaaag catctccgca gccaaacttt
    11461 acaaaaatgc ttgtttggtt gcggagttgt ctttttgaaa gtaggggaat tatgggtaat
    11521 ggtgttcagc cacttgatcc ggtggcgatt caaattggta gtatatctgt gaaatggtac
    11581 ggagttatta ttgcttcggc tgttgtcatc gcgttacttc ttgctttaag tgaagcaaac
    11641 aagcgcaaaa tggataaaga aattattgtg gatttgctga tatgggcaat tccgatttca
    11701 attattagtg ctcgaattta ctatgttatt tttgagtggg atttctataa gaataattta
    11761 ggcgaaatag tgaaaatctg gcacggaggt attgctattt atggcgcgct aattggtgca
    11821 gttttaacgg caattatttt ctcgcggatt aagaaaattt cgttctggca acttgcggat
    11881 gtcgttgcgc caagtttgat tattgcgcag gcaatcgggc gttggggaaa cttcatgaac
    11941 caagaagctc atggtgcaga aacaacgcgt tcttttctgg aaagccttca tttaccagat
    12001 tttattatca accagatgta catagatggt gcttattatc aaccgacttt cttatatgag
    12061 agtttatgga atgtgcttgg atttattgtt ctattaatta ttcgtcgcac aaaaattcgt
    12121 cgtggggagt tgttcctcgg ctatgtaatt tggtattcat ttggaagatt ctttattgaa
    12181 ggaatgcgga cagatagctt aatgtggggg gactttagag tttcgcaagt gctatcttta
    12241 cttcttattg ttttgtctat tggtattatt atttatcgtc gtatg
//
LOCUS       DABQVC010000081        12171 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.081,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000081 DABQVC010000000
VERSION     DABQVC010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12171
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.081"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..505
                     /locus_tag="IBJ56_001536"
     CDS             <1..505
                     /locus_tag="IBJ56_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3417791.1"
                     /translation="FTIDFNQTEAANVTKTNKKKIGTIIVKFIDVEGNQLNDEEMHTG
                     NVDEEYNVKAKEIVGYTLVKDSANKKGMYKETSQEITFVYEKKAMPIIVEPTEPSKPT
                     EQLTESATVAEPKPIKQNFKTTNKSTNNKRKLPSTGDEFPYTMLFIGLFVSVAGVFFL
                     KKPKQIK"
     gene            complement(545..892)
                     /locus_tag="IBJ56_001537"
     CDS             complement(545..892)
                     /locus_tag="IBJ56_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HAM3417792.1"
                     /translation="MNDHRILNALSYFSILFAPVIVPVLIWIFAKSEDVTHHAKVALL
                     THIIPTIAGVLCFSSVFVTALTNGGLLANVSFFVTGSLFIFTLIAIVGLFIFNIVRGI
                     QMLLTKNEEDAWI"
     gene            complement(998..1561)
                     /locus_tag="IBJ56_001538"
     CDS             complement(998..1561)
                     /locus_tag="IBJ56_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3417793.1"
                     /translation="MDRRIKKTKQALNQALFTLLDEKTFQQITITDIVTVADVNRGTF
                     YKHYRDKEELLDSIIDEVLADLQKAYQDPYTHKTPFSIQTLTPSMIKIFDHVYGHQAF
                     YTQVIKSTIRPSFQNQVCDVIRELILNDFDYSADSSSIEPLLLASYQAHAIFGMIVFW
                     AEESFAHSPAFMSEQLLHIIQTKNPIL"
     gene            1745..2506
                     /locus_tag="IBJ56_001539"
     CDS             1745..2506
                     /locus_tag="IBJ56_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3417794.1"
                     /translation="MGKLNGKVAVVTGAASGMGQQIAILFAKEGAKVVVADLNLEAAQ
                     KTVALIEKEQGTSLAVVANVTKQDDIESMINKATETYGTLDILVNNAGIMDNFVPAGE
                     LTDELWDKVFAINTTGVMRATRKALHIFEEKGQGVIVNIASAGGLFGSRAGAAYTASK
                     HAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDQFGQERAMIGMGTNPRA
                     GDASEIAKVALFLASDDASFVNGTVITADAGWTAY"
     gene            2685..3758
                     /locus_tag="IBJ56_001540"
     CDS             2685..3758
                     /locus_tag="IBJ56_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAM3417795.1"
                     /translation="MVQQLVSNAAILLAGFYIISLVYKEPITKELSINRKMVIGVWAG
                     LLGFALMIFGIPISNNVIVDLRHIPIIMVGFYGGPIPAIVSAVIITTSRFLISVNSAA
                     MMAGVIMMLIGIITALFSKRLEKYNIWGVFILNIIACGFVVVNLHLILAKEPDFWINM
                     FIFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMD
                     DGSRQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFS
                     IVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFK
                     SADEALYKAKLTGRNRVCIADEN"
     gene            3864..5231
                     /locus_tag="IBJ56_001541"
     CDS             3864..5231
                     /locus_tag="IBJ56_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HAM3417796.1"
                     /translation="MFDLMDNLLGVQSFGELNKDMPTTLFVTDADGNILISNKFTALT
                     VGMSLEELLRCNVRDLVEDGVYNDSVTLEAIRTKQKKTKVINTKKGFSIRSTSTPILY
                     PDGTVHLVVTMSDETQPDSFKTWRGEAISGNKESLLLEDYKENDGTVIVAESVAMKQI
                     VRVCNQIAPFDSKVLLYGESGTGKEVLSRYIHEKSEQAAGPFISINCAAIPKALFESE
                     LFGHEKGSFTGADIEKPGMLELADGGTLFLDEISEMPLELQAKMLRVLETGEVRRLGS
                     TTETKRRFRLISATNRNLGEMVEKGTFRRDLYYRINVVPVHIPALRERPQDIIGLARQ
                     FIQKFNQKYQKDFQLSGDKTKELLSHNWPGNVRELRNQIERLVVMSGNKEVTVAEIDD
                     FALDLHFKEQTKKDSLYLKDYLQDVEKHFILRVLEESNGNVTKAASVLGIHRSVLYRK
                     LKTLH"
     gene            5461..7044
                     /locus_tag="IBJ56_001542"
     CDS             5461..7044
                     /locus_tag="IBJ56_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HAM3417797.1"
                     /translation="MSKVIKASEAAKLLKDGDTVAFSGFGLACVNEEMAIAVEKRFLE
                     EGAPRNLTVMHASALGDRREKGMSHWGHEGLIKRWIGGIAIASPKMAKLIEEDKCEAY
                     NLPQGVITQLYREIAAKRPGVITKIGMGTFVDPRIEGAKMSASSKDNLVELLTIHDEE
                     WLFYPSFPIQVALIRGTVADEFGNLTLEKEGLHMEVLPIAQAVRNSGGIVIAQVESVA
                     KKGSLNPKDVRVPGILVDHIIISEPENHFQTENTQYNPAFSGHIQVPLGDIEPLPLDD
                     RKVIARRSAAELEPQTILNLGVGIPVNVSTVAAEEGVSDQLILTTEAGSVGGVPAGLA
                     DFGHAYNSEAIVDHHSQFDFYDGGGLDLSVLGLAQTDESGNVNVSKFGSRVAGCGGFI
                     NISQSAKKLIFAGTFTAGGLKTRVADGKLEILQEGKAKKFIKQVQQITFSGEYASTTD
                     QIILYVTERAVFRLENGKMVLTEIAPGVDLEKDILGQMEFEPVIASDLKVMDSGMFSE
                     QWGGLKTIIEKQTREGVSI"
     gene            7041..8264
                     /locus_tag="IBJ56_001543"
     CDS             7041..8264
                     /locus_tag="IBJ56_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HAM3417798.1"
                     /translation="MTKEINRWGVLIGSVGVLLCTGAVYAFSVFAGPLSAAHGWTIPQ
                     VMMAFTINAAIGPIPTILGGILTDKGKAKWAILIGGILFGLGFALTGFATSTTMLYLS
                     YGVLAGLGQGFAYSGCLSNTIRLFPDKRGLASGLITAGMGGATIIAAPIANHLIETYN
                     VMTAFKIMGAVYIAVVIGCSFLIRVAPAGYAPKGWTPPANNAAGMVNVPWTGMVRTVT
                     FYLILLMLGIGAFSGLMIASNASLIGQNMFGLTAASAAAYVSIYSLSNCLGRVVWGAV
                     SDRLGRSNTLMIIYTVIALSLLALATLQSVVGFVIGIIGLGLCFGGTMGVFPSIVMEN
                     YGSKNQGVNYGIVFIGYSTAAFFAPKMAAQIAGQNGGDFTQAFYIAIALAAVGLCINI
                     VYKLREKKQPTKELA"
     gene            8286..9215
                     /locus_tag="IBJ56_001544"
     CDS             8286..9215
                     /locus_tag="IBJ56_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF561 domain-containing protein"
                     /protein_id="HAM3417799.1"
                     /translation="MSLTEMLQIKYPILQGAMAQIATYELASAVSNAGGLGIIASGGM
                     SADTLREQIRLCKEKTTKPFAVNIMLMMPNCPELVDVIIEEDVRVVTTGAGTPKPFME
                     KFKAAGIKVIAVIPSVKIAQKMEEIGVDAVVAEGTEAGGHVGETTTMALVRQVVSAVN
                     IPVIAAGGIADGHGMAAVYALGASGVQIGTLFLVAEECPVPASFKQAVLDATDTSTTV
                     TGRRNGAPVRSIKNPMIQKYVELENENASRDKLEELTLGSLRKAVHEGDVENGSVMAG
                     QICGMLKEIRSTSDIIESLMKESKQVASNLVIQ"
     gene            complement(9261..9419)
                     /locus_tag="IBJ56_001545"
     CDS             complement(9261..9419)
                     /locus_tag="IBJ56_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417800.1"
                     /translation="MGKYFIIILIALAINGISILFHNDIASLIAVIITAVLLIYLMVD
                     LTKMYRRK"
     gene            complement(9442..9831)
                     /locus_tag="IBJ56_001546"
     CDS             complement(9442..9831)
                     /locus_tag="IBJ56_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HAM3417801.1"
                     /translation="MTAKMLHTCIRVKNLTESITFYEKALGLKEVRRKDFPDFEFTLV
                     YMAFEEGGFELELTYNYDQKEAYDLGNGYGHLAVGVPDVHALLKEHQEASFTVTDLKG
                     LPGEDPFYYFLTDPDGYKTEIIQDGAL"
     gene            9962..10579
                     /locus_tag="IBJ56_001547"
     CDS             9962..10579
                     /locus_tag="IBJ56_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAM3417802.1"
                     /translation="MTKIKRIMTGIIQENCYIIYQDKVALIVDPGDEASKIEAEIAKL
                     EVKPVAVLLTHCHYDHIGALEEIRKTYNIPVYVSPLEQEWLSNPELNLSAHIAGKAII
                     AQPAENEFTLGEYSIEGFRFKVVPTPGHSIGSVSFIFDDFVVVGDALFKGSIGRTDLY
                     TGDFDMLINSIKTQLFVLPDDFPAYSGHGDATTIGHEKKTNPYFN"
     gene            10644..11315
                     /locus_tag="IBJ56_001548"
     CDS             10644..11315
                     /locus_tag="IBJ56_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3417803.1"
                     /translation="MHSDEEIFKETTPKALLQLLKKDYYFHDYCYQEIIPRGKEIKMN
                     NSKGFQIYLVESGYFSYCLQNEYGDSGIISFVGGEIAINLIPIIKEEPEESVLRSLTE
                     VHCWVLDPDFVERVLDESGQKAKYLLSNLLYTRKVYFKASKRNFMKKELRIRACLKEL
                     GLYMGRVTKDKEFILPDEINNSILAQYANTTREYTNIIVLKLRKEGILDDSHKPWVIK
                     KIDIL"
     gene            11568..>12171
                     /locus_tag="IBJ56_001549"
     CDS             11568..>12171
                     /locus_tag="IBJ56_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3417804.1"
                     /translation="MNTLEKRQHEILTNPLHFCKKSGDFAKHSMSIKLSKNELFDVDF
                     VTGIYFVEKGIVMKGTQIDDYIGYDQLLKPGDVCNFSSFMSSDLKRNIGAQLLSPSSS
                     VITAVDRDFFIFMVEKHVSVEEFMLYQAKKEIMILQRRCLLNTLKVKDRVKHLIAAIG
                     YEYGISNGDNIQIPQELSTTFLSKFMGITREYLSLTLSELK"
BASE COUNT         4052 a         1917 c         2537 g         3665 t
ORIGIN      
        1 tttcacgatt gattttaacc aaacagaagc ggctaatgta accaaaacca acaagaaaaa
       61 aattggtaca attatagtta aatttataga tgtagagggc aatcaattaa atgatgagga
      121 aatgcatact ggaaatgttg atgaagaata caatgtgaaa gctaaagaaa tcgttggcta
      181 cacattagtt aaagattccg ctaacaaaaa aggtatgtat aaagaaactt cacaagaaat
      241 aacctttgtt tatgagaaaa aggcaatgcc gattattgtg gaacctactg aaccatcaaa
      301 accaacagaa cagctaacag aatcagctac agtagcagag ccaaaaccta taaaacaaaa
      361 ctttaaaaca acaaacaaat caacaaataa taagagaaaa cttccttcta caggagatga
      421 gttcccttat acaatgctat tcattggatt gtttgttagt gttgctggag tattcttctt
      481 aaaaaaacct aaacaaataa aataaaaaaa agctatccta agaaatttag gatagctttt
      541 tcatttaaat ccaagcatct tcttcatttt tcgttaaaag catttgaata cctcgaacaa
      601 tattaaagat aaacagtcca acaatagcta ttagtgtaaa tataaataag ctaccggtaa
      661 cgaaaaatga tacatttgcg agtaagccgc catttgtcaa agctgtaacg aaaacactgg
      721 agaaacatag aacaccagcg atagtcggaa taatgtgagt tagtaatgca actttagcat
      781 gatgagtaac atcctctgat ttagcaaaaa tccaaatcaa tactggcaca ataacaggtg
      841 caaataggat actaaaataa cttaaagcat ttaaaatacg atgatcattc ataatcaaca
      901 cacctttcta agatgtcttt attatagcaa gactaggatt atgaagccct cgtttcaagt
      961 tacaaagaag gaaaataata taacaaatat gtaagaatta taagattgga tttttagtct
     1021 gaataatatg aagaagttgc tctgacataa acgccggtga atgagcaaaa ctttcttctg
     1081 cccaaaaaac aatcatgccg aaaatcgcat gtgcttgata agatgcaagt aacaagggct
     1141 ctatactcga actgtcagct gaataatcaa agtcatttaa aatcagttcc cgaataacgt
     1201 cacaaacttg attttgaaaa ctgggacgga ttgtcgattt tataacttgt gtataaaaag
     1261 cttgatgacc gtatacatga tcaaaaattt ttatcatgga aggtgtaagt gtttgaatgg
     1321 aaaaaggcgt cttatgtgta taagggtctt gatacgcttt ttgtaaatca gccagcactt
     1381 catcaataat actatctaaa agttcttctt tgtcacggta atgtttatag aacgtgcctc
     1441 gattaacatc tgctactgta acaatatccg taatcgtaat ctgttgaaaa gttttttcat
     1501 caagaagagt aaataaagct tggtttaagg cttgttttgt ttttttaatc cttctatcca
     1561 tcatttgaaa ctcccatccg agaaaatttc ctactactat acatataacg caaaagtgtt
     1621 gcttaatcaa caaaacaggc tttctttaca tattgatagc gctttatatc ggagctataa
     1681 ttaaaataag aaggagagaa attttatcct ttttagcgta acaaaagtga aggaggaaat
     1741 aacaatgggg aaattaaatg gaaaagtagc cgtagtaact ggtgcagcgt ctggaatggg
     1801 gcaacaaatt gcgattcttt ttgcgaaaga aggggcgaag gttgttgttg cggatttaaa
     1861 tttagaagcg gcacaaaaaa cagtagcgtt aattgaaaaa gaacaaggta catcacttgc
     1921 ggttgttgcg aatgtcacga aacaagacga tattgaaagc atgattaaca aagctactga
     1981 gacatacggc acgttagata ttttagtaaa caatgcgggc atcatggata attttgttcc
     2041 agccggcgaa ttaactgatg aactttggga taaagtgttt gcgataaata caactggtgt
     2101 aatgcgagca actagaaaag cacttcatat ctttgaagaa aaaggacaag gggttatcgt
     2161 taatatcgca tctgctggag gtttgtttgg ttcaagagca ggggcagcgt atacagcttc
     2221 taaacatgct gtcgttggtt ttacaaaaaa tgttggtttc cagtatgcta ataaaaatat
     2281 tcgctgtaat gctatagcac ctggagctgt aaatacaaat attggtacta ctatttatgc
     2341 tccagatcaa tttgggcaag aacgagctat gattggaatg ggaacaaatc ctcgagctgg
     2401 tgatgcttct gaaatcgcca aagtagctct atttttagct tcggatgatg ctagttttgt
     2461 aaacgggacg gtaattacag cagacgctgg ttggacagct tactaaaaat ataaaaaatc
     2521 cgcatgagag aattattttc ttttgcggat tttttatgag aaaatagaaa gatggatatt
     2581 ttttaacaac ttcgcgttta ggggttgttt ctttgtgtag agagaatgaa tagttgtgag
     2641 cataatgggg tattaaataa caaagtgaaa ggcggggatg ctttttggtt caacagttgg
     2701 taagtaatgc agcgatatta ctcgcaggat tttatattat ttctttagtc tataaagaac
     2761 caattacgaa agaattatcg ataaatagaa aaatggtgat aggcgtatgg gcagggctac
     2821 taggatttgc gctaatgatt tttgggatac cgatttcaaa taatgtaatt gttgatttgc
     2881 gtcatatccc tattattatg gtgggttttt atggcgggcc cattccggca attgtttcgg
     2941 cggtcattat tacaacttca cgatttttaa tttcagtgaa ttctgcagcg atgatggctg
     3001 gtgtaatcat gatgctgatt ggcattataa cagctctttt cagcaaacgc ttagaaaaat
     3061 ataatatttg gggcgttttt attttgaata ttattgcgtg tggttttgta gtcgttaact
     3121 tacatttgat tttagcaaaa gagccagact tctggataaa tatgtttata tttgtatcga
     3181 tcgcgcttgt aattggcgct gtttccgcag gtttaatgaa gaatatgatt aaatcaaagc
     3241 aattgtttca aaaatacgaa caagactcta cgctcgatta tctgacgcgg ttatcaaatg
     3301 taaggcaatt tgatgaaaaa atcaaccatg taatggacga tggaagtagg caagtgacat
     3361 taatgttaat cgatattgat tactttaaaa atattaacga tacatacggc catgacgctg
     3421 gtgatgccat tttgaaacaa ttagctatta ttttaaaacg aaacacatca gatggttctg
     3481 aggcatttag aaacggcggg gaagaatttt ccattgtctt attagattgt ccgattgaaa
     3541 aaggtaattt ttttgctgaa caagtgcgaa aagaaacgga agatcacgat tttatgatac
     3601 cgagtggaaa actagtgaaa attacaattt ccgttggggt tagcagtagt aaagatggtg
     3661 ctaatacaag tgaaggatta tttaaatctg ctgatgaagc gctgtataaa gcaaaattaa
     3721 ccgggcgaaa ccgagtatgt attgcagatg aaaattagct tgtcgcaaaa aaacgagtac
     3781 ttctagtaga tagcttatgt tataatagat tgtgtaatga tgagcaaata actaggaaac
     3841 tagtccaaaa ggatgagctt ttaatgtttg acttaatgga taacttgctg ggagtacagt
     3901 catttggtga attaaataag gacatgccaa cgacactttt tgtcacggat gcagatggta
     3961 atattttaat ttctaataaa ttcactgcgc tcacagttgg aatgtcgctc gaagaattgc
     4021 ttcgttgtaa tgtaagagac ctagtggaag acggtgtata caatgattct gtcacactag
     4081 aagcaatccg cacaaaacaa aagaaaacaa aagtgatcaa tacgaagaaa ggttttagca
     4141 tccgctcgac ttctacgcca atactttatc ctgatggcac ggtgcattta gttgttacta
     4201 tgtcagatga aacgcaacca gatagtttta aaacatggcg tggtgaggca atttcgggga
     4261 ataaagagtc gcttcttctt gaggattata aagaaaatga tggcactgtg atagtagcag
     4321 agagcgtcgc gatgaagcag atagttcgtg tgtgcaacca gatcgctccg tttgacagta
     4381 aagtcttatt atacggggag tccggtactg gtaaagaagt cttgtcgcgc tatattcatg
     4441 aaaaaagtga acaagctgct ggacctttta tctcgattaa ctgtgcggca atcccaaaag
     4501 cattatttga atctgagctt tttggacatg aaaaaggttc atttaccggt gcggatattg
     4561 aaaaacccgg gatgcttgaa ctagctgatg gtggcacatt atttttagat gaaatttctg
     4621 aaatgccact agagctacaa gcgaaaatgc tccgagtgct tgaaactgga gaggtaagaa
     4681 ggcttggttc aacaaccgaa acgaaacgcc gctttagact gatttcagcg accaatcgaa
     4741 accttgggga aatggttgaa aaaggaacat ttaggcgtga tttatattat cgtattaatg
     4801 ttgtgccggt tcacattcca gcactcagag agcgaccgca agatattatt ggtcttgcac
     4861 gtcagttcat acaaaaattc aatcaaaaat accaaaaaga ttttcagtta agtggcgata
     4921 aaacgaaaga attactttct cataattggc caggaaatgt tcgtgaactt agaaaccaga
     4981 ttgagcgatt agttgttatg tctggaaata aagaagtgac tgttgcagaa atagatgatt
     5041 tcgcactaga cttacatttt aaagaacaaa caaaaaaaga ctcactttat ttgaaagatt
     5101 atttgcaaga cgtggaaaaa cattttatat tgcgagtact cgaagaaagt aatggaaacg
     5161 tgacaaaagc ggccagtgtg cttggaattc accgctctgt tttatatcga aaactaaaaa
     5221 cacttcatta aatagaaggc ctaatcggat tttgcgatta ggcctttttt gttgcatttt
     5281 cgcgacttct gtttgtaaaa accatcattt tgacgtctct tttttgcgac aataaataat
     5341 atttgaattt ataaagtgct ttatagagcc atttttgatg ttggcacgga agttgcttta
     5401 taaagaactg catgtcatta caaatatatg tgaataattg aacaatgagg agtgaggaat
     5461 ttgtcaaaag taataaaagc tagtgaagca gcaaaattat taaaagatgg cgatactgtt
     5521 gcttttagtg gtttcggttt agcttgtgtt aatgaagaaa tggctatcgc ggttgaaaag
     5581 cgttttttag aagaaggggc accgcgtaat ctaacagtta tgcatgctag tgcgcttggt
     5641 gatcgcaggg aaaaaggaat gagtcactgg ggacatgaag gattaattaa acgctggatt
     5701 ggcggaattg cgattgcttc tcctaaaatg gcgaaactaa ttgaagaaga caaatgtgaa
     5761 gcatacaatt taccacaagg tgtaattacg caactgtatc gtgaaattgc agctaaacgg
     5821 ccaggcgtga ttacaaaaat tggcatggga acatttgtag atccacgtat tgaaggggca
     5881 aaaatgtctg cgagttctaa agacaactta gtagagctat tgacgattca cgacgaagaa
     5941 tggctatttt atccaagttt cccaattcaa gttgcgctca ttcgcggaac tgtggctgat
     6001 gaatttggga acttaacgtt agaaaaagaa ggcttacata tggaagtctt gccaattgca
     6061 caggcagttc gaaattcagg tggaattgta atcgctcaag tagaatctgt tgcgaaaaaa
     6121 ggatcgctta atcctaaaga tgttagagtt ccaggaattt tggttgatca tattattatt
     6181 tcagaaccgg aaaatcattt ccaaactgaa aatacacagt acaacccagc tttttcaggg
     6241 catattcaag ttccgcttgg agatattgag ccacttccgt tagatgaccg taaagtaatt
     6301 gcgcgtcgtt cagcagcaga actagaacca caaactattc taaatttagg tgtaggaatt
     6361 ccggtgaacg tatcaactgt agcagcggaa gagggcgtga gtgatcaatt aatactaaca
     6421 acggaagctg gttctgttgg tggtgttcca gcaggtttag cagatttcgg tcatgcttat
     6481 aacagtgaag ctattgtcga tcatcattcg cagttcgatt tttacgatgg tggaggactc
     6541 gatttatccg tacttggttt ggcgcaaacc gacgaatccg gtaatgtgaa tgtcagcaag
     6601 tttggctcaa gagttgctgg ctgcggtgga tttattaata tctcccaatc agcgaaaaaa
     6661 ttaatttttg ccggaacttt tacagcaggt ggattaaaga cgcgtgtagc tgacggaaaa
     6721 ttagagattt tacaagaagg aaaagctaaa aagtttatca aacaagttca acaaatcaca
     6781 tttagtggcg aatacgcttc aacgaccgac caaatcatcc tctatgtgac agagcgagct
     6841 gtattccgtt tagaaaatgg caaaatggtt ctaacagaaa tcgcgccagg agtagattta
     6901 gaaaaagata tccttggaca aatggaattc gaacctgtta ttgcgagtga tttaaaagta
     6961 atggatagcg gtatgtttag tgaacaatgg ggcggcttaa aaactattat tgaaaaacaa
     7021 acaagagagg gagtatctat atgacaaaag aaataaaccg ttggggagtc ttaattggct
     7081 ctgttggtgt tctgctttgt accggtgcgg tatatgcatt tagtgttttt gctggaccgc
     7141 taagtgccgc tcacggttgg acaattccgc aagttatgat ggcatttaca attaatgcgg
     7201 cgattggacc aattccaact attttaggtg ggattttaac ggataaaggg aaagcaaaat
     7261 gggctatttt aattggggga atcctgtttg ggcttggttt tgcgttaaca ggatttgcta
     7321 cttcaacgac gatgctttat ttgtcttatg gtgtccttgc tgggcttgga caaggttttg
     7381 cgtattcagg atgtcttagt aacacgattc gtcttttccc agataaacgt ggtcttgctt
     7441 ctggacttat tactgcagga atgggtggag cgacaatcat tgctgcaccg attgcgaacc
     7501 acttaattga aacatataac gtaatgacag catttaaaat tatgggagct gtttatatcg
     7561 cagttgtcat tggatgtagt ttccttattc gcgtcgcacc agctggttat gcaccaaaag
     7621 gttggacacc gcctgctaat aatgcagctg gtatggtaaa tgtaccttgg acgggaatgg
     7681 ttcgaacagt tactttttat ctgattcttt taatgctagg tattggcgca ttttccggtc
     7741 tgatgattgc ttctaatgca tccttaattg gtcaaaatat gtttggcttg acggctgcat
     7801 cggctgctgc ttacgttagt atttattcac taagcaactg tttaggtcga gtagtttggg
     7861 gcgctgtatc tgaccgtcta ggtagatcta atacattgat gattatctat acagtgattg
     7921 ctttatcttt actagcactt gcaacgcttc aatctgttgt tggatttgtt atcggaatta
     7981 ttggacttgg actttgcttt ggtggaacaa tgggcgtttt cccgtctatc gttatggaaa
     8041 attacggttc gaaaaatcaa ggcgtcaact acggaatcgt cttcattggt tattccacag
     8101 cggccttctt tgcaccaaaa atggcagcgc aaatcgccgg tcaaaacggt ggcgacttca
     8161 cacaagcttt ctatatagct atcgcacttg ctgctgtagg actttgcatt aatattgttt
     8221 ataaattacg tgagaaaaaa caaccaacta aagaattagc gtaaaaatag agaggagaaa
     8281 agaaaatgag tttaactgaa atgctacaaa tcaaatatcc aattttacaa ggggcaatgg
     8341 cacaaattgc cacatatgaa ttagcttccg cggtatcaaa tgcaggtggg ctaggaatta
     8401 tcgcatcagg tggaatgtca gcagacacat tacgagaaca aattcgcctt tgtaaagaaa
     8461 agacaacaaa accgttcgct gtaaatatca tgctgatgat gccaaattgt ccagaacttg
     8521 tcgatgttat tattgaagaa gatgtgcgag ttgttacaac tggggcaggc acgcctaaac
     8581 catttatgga aaaatttaaa gcagctggaa ttaaagttat cgccgttatc ccgtctgtga
     8641 aaattgctca aaaaatggaa gaaatcggtg tggacgctgt tgttgcagaa gggacagaag
     8701 cagggggaca tgtcggagaa acaacaacga tggcactcgt tcgtcaagtt gtttcagcag
     8761 taaatattcc tgtcattgca gcaggcggta ttgcagatgg tcacggaatg gcagctgttt
     8821 atgcgttagg cgcaagcggt gtccaaatcg gcacactttt ccttgttgct gaggaatgtc
     8881 cggttccagc tagctttaaa caagcggtac ttgacgcaac ggatacaagt acgactgtaa
     8941 caggtcgtcg caatggtgcg ccagttagaa gtattaaaaa cccaatgatt caaaaatatg
     9001 ttgaactaga aaacgaaaat gcctccagag acaaattaga ggaattaaca cttggctctc
     9061 ttagaaaagc agtacatgaa ggtgacgttg agaatggttc agttatggct ggacaaattt
     9121 gtggtatgtt aaaagaaatt cgttccacta gtgatattat cgaaagcctc atgaaagaat
     9181 ctaaacaagt tgcaagcaat ttagtgattc aataataaaa agagtcagta atatcctagt
     9241 ggattttgct gactcttttt ttatttacgt cgatacattt ttgttaagtc taccatcaaa
     9301 taaataagta gaacagctgt aatgatgaca gcgataaggc ttgctatatc attatggaat
     9361 aaaatactga ttccattaat tgctagtgcg atcaaaatta taataaaata ttttcccatt
     9421 aagcttctcc agttcttcta attataaagc gccatcttga atgatttctg ttttataacc
     9481 atctggatct gttaagaaat aatagaatgg atcttcgcca ggtagtcctt ttaaatctgt
     9541 cacagtaaaa ctagcttctt ggtgttcttt taataaagca tgtacgtccg gaacaccaac
     9601 tgctaagtga ccataaccat ttcctaaatc gtaggcttct ttttggtcgt agttgtacgt
     9661 taattctagt tcaaaaccgc cttcttcaaa cgccatatat actaatgtga attcgaaatc
     9721 cgggaagtcc ttgcggcgaa cttctttaag tcctaatgct ttttcgtaaa aagtaatcga
     9781 ttctgttagg ttttttacgc ggatacatgt atgtaacatt tttgcagtca tttttattcc
     9841 tccttttaaa cttctttctt cattgtagta tatctcggaa gtgaatacaa acaaggaata
     9901 ttgatggaag taaggtggct ttttaggtat aatgatgaat gtgaagaaag gcggaagtga
     9961 aatgacaaaa atcaaacgaa tcatgacagg aataatccaa gaaaattgtt atatcattta
    10021 tcaagataag gtagctttaa ttgttgaccc aggcgatgaa gcaagtaaaa ttgaagcaga
    10081 aattgcaaaa cttgaagtaa aaccagtggc agttttgtta actcattgtc actatgatca
    10141 tattggtgct ttagaagaga ttcgcaaaac atataatatt ccagtatatg ttagcccact
    10201 agagcaagaa tggttatcca atccagaatt aaatttatct gcgcacatag ctggtaaagc
    10261 aattatagcg caaccggcag aaaatgaatt tacgttaggt gaatatagta tagaaggttt
    10321 tcgttttaaa gtagtaccga caccagggca ttctatcgga agcgttagtt ttattttcga
    10381 tgattttgtc gtagttggcg acgctttgtt taaaggtagt atcggtcgta cggatttata
    10441 cacaggagat ttcgatatgt taataaatag tattaaaaca caactgtttg tacttccaga
    10501 tgacttccca gcctattcag gtcatggtga tgcaaccact atcggtcatg aaaagaaaac
    10561 aaacccatat tttaactaaa aaagaacttg cagaagcatt tattctgcag tttttttgta
    10621 atcaatggaa aggatgttgg aaaatgcatt cagatgagga aattttcaaa gaaacaacgc
    10681 caaaagcatt actacaatta ctaaaaaaag attactactt tcatgattat tgttatcaag
    10741 aaattattcc tagaggtaaa gaaatcaaga tgaataattc gaaaggtttc caaatatact
    10801 tagtcgaaag cggatacttc tcttattgcc tccaaaatga atatggagat tctgggatta
    10861 ttagctttgt tggtggcgaa atagcaatta atttaattcc gattattaaa gaagaaccag
    10921 aggagtccgt actgcgtagt ttgacagaag ttcattgttg ggtacttgat cctgattttg
    10981 tggaacgtgt tttggatgaa tcgggtcaaa aagcgaaata tctattatct aacttacttt
    11041 atacaagaaa agtttatttt aaagctagta agcgtaattt tatgaagaaa gaacttcgta
    11101 ttagagcatg cttaaaagag cttggtctgt acatgggcag agtaacaaag gataaggaat
    11161 tcattttgcc tgatgaaatc aataattcta ttttagccca atatgcgaat actactcgag
    11221 aatatacgaa tattattgta ctaaaactac gaaaagaagg aattctcgat gatagtcaca
    11281 aaccgtgggt cataaaaaaa atagacatac tttaaagaac aaaacttaat atatattgat
    11341 ttttacgtta aaaaaggtgg aaaagttaaa atattaccta aaaaaagcat agaaaaaatg
    11401 tcacaaaaag tacttattta gacatattat gcccaaaaaa agttgatttt aatgaacaaa
    11461 tagtgaaaaa gttctttttt tatgatagta acgttatttt atttagctta ttccttctct
    11521 agggtgtttt cattgtgtga tattatactt tagaggagga atttgcaatg aacacattag
    11581 aaaaacgaca acatgaaatt ttgaccaatc cacttcattt ttgtaagaag tctggagatt
    11641 ttgctaagca tagtatgagt attaaacttt ctaaaaatga actgtttgat gttgattttg
    11701 ttacaggtat ctactttgtt gaaaagggta ttgttatgaa aggaacacaa atagatgact
    11761 atattgggta cgatcaattg ctaaaacctg gagatgtctg taatttttca tcttttatgt
    11821 cttctgattt aaaacgcaat attggtgctc aattactctc gccaagttct agcgtcatca
    11881 cggcagtaga tagagatttt ttcattttta tggtagaaaa gcatgttagt gtagaagaat
    11941 ttatgcttta tcaagcgaaa aaagaaatta tgatactgca acgtcgctgt ttgcttaata
    12001 cgcttaaagt gaaagatcgc gtaaaacact tgattgctgc aattggttat gaatatggta
    12061 tttccaatgg agataacatt caaatcccgc aagaattatc tactacattt ttatctaaat
    12121 tcatgggtat tacaagagag tatcttagct taactctaag tgaactaaaa a
//
LOCUS       DABQVC010000082        12084 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.082,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000082 DABQVC010000000
VERSION     DABQVC010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12084)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12084)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12084
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.082"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..843)
                     /gene="galU"
                     /locus_tag="IBJ56_001550"
     CDS             complement(<1..843)
                     /gene="galU"
                     /locus_tag="IBJ56_001550"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HAM3417805.1"
                     /translation="MRVKKAVIPAAGLGTRFLPATKAMPKEILPIVDKPTIQYIVEEA
                     VASGIEDILIVTGKGKRAIEDHFDSVPELENNLREKNKLELLHLVEQTTNINLHFIRQ
                     AKPKGLGDAILQAKGFVGNEPFIVMLGDDIVESKIPCSKQLMNQYEKTHSSVIGVQTV
                     PHEETYRYGIIDPINEYDKNLYNVKGFVEKPDPANAPSDLAILGRYLLTPQIFDFLET
                     QKPGAGGEIQLTDAINSLNEVQRVFAYDFEGQRFDVGDKFGFIQTTMQFALKHPEIKD
                     DVKDL"
     gene            1067..1780
                     /locus_tag="IBJ56_001551"
     CDS             1067..1780
                     /locus_tag="IBJ56_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007472742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HAM3417806.1"
                     /translation="MIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNT
                     RFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYGLTD
                     DDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRD
                     HMYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKIT
                     TPYDLKVANAIIQERIAND"
     gene            1773..2798
                     /locus_tag="IBJ56_001552"
     CDS             1773..2798
                     /locus_tag="IBJ56_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HAM3417807.1"
                     /translation="MINQVYRLVSERQFEVANVDESLTGDVVVVRPTHLSICAADQRY
                     YTGSRGKEMLSKKLPMALIHEGVGEVVYDATKEFKPGTKVVMVPNTPFENDPVIAENY
                     LRSSKFRSSGYDGLMQDYVFMRRDRVVALPDDINMKVAAFSELISVAVHAILRFEGKS
                     NANRESFGVWGDGNLGFITSLLLKNWYPDSKVYIFGKTPYKLDFFSFVDGAYAIDDVP
                     ADLVIDQAFECAGGMGSQYAVSQIIDVIKPEGTISLLGVSEYPIEFNSRMVLEKGLTV
                     YGSSRSGRVDFEKTVEFLSTNKRGVEYLQNLVGEVHTVHSIQDVIEAFEADLRSPWGK
                     SVMEWKI"
     gene            2941..4320
                     /locus_tag="IBJ56_001553"
     CDS             2941..4320
                     /locus_tag="IBJ56_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAM3417808.1"
                     /translation="MKFAIIMPFYNAEKRLALSIDSIIKQSYSFLKHVEVLLINDGST
                     DGSGAIANRYATKYPNNIRVLTVPNGGPAKARNIGIHNVSEDTDFVGFLDADDIMSEN
                     MLASIVTFLNESNVSMLVPAFYYLDDFGSKKKISPHKLNYRFANGNRVADIEKEPEAI
                     HFYIGGTFLRYDCLKEFTFDESLYFAEDQLLITQFLLKYRSYGLIADAGYYYYRDLKQ
                     KGSLVSSSWKKPERYTPFLQKVYQTYLTDSKEIYGKVIPYVKYLIAYHAKLFFYKENT
                     YFREVLSESEQAIFVQELQKILQEVGASTIMELDTPLVVKEMMCSILQNGWPLQFETA
                     EKQDIPLVTVKENYRIGKTVAIELLLEEADIHDVKWVARTSFKEMPARLVKRKENQTI
                     WDVVVREKGTVEKAVFKLKPYQTKARLFYQDEEKDTPIADINIISSILGKLKRNRALK
                     RKFKQGGVS"
     gene            4320..5474
                     /locus_tag="IBJ56_001554"
     CDS             4320..5474
                     /locus_tag="IBJ56_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HAM3417809.1"
                     /translation="MKLVQKVYYLLFRLVGFLPRKKDLVIFESFSGKQYSCNPRAIYE
                     YMEEHNPEYELLWSVNPKFVAVFEAYGVPYVKRFSISWLFKMGLAKYWISNSRLPLEL
                     PKPKKTIYVQTWHGTPLKKLGVDIDEVHIPGQTTEQYKADFVKEAQKWDYLISPNAYS
                     SAIFRRAFGFTGEMIESGYPRNDILFSTDKELKIANIKKELNIPEEKKVVLYAPTWRD
                     NDFYEAGRYKFDLKIDIAKMQEKLGNEIVLLVRMHYLVAEHFDFTQYGDFVRDASNHE
                     DIRDLYLVSDLLITDYSSVFFDYANLQRPMLFYTYDLAEYRDTLRGFYFDFEKNAPGP
                     LVETNEELMSELEKMLENPPKIEDSFLEQFCTWEDGHAAEKTVKIVFAEK"
     gene            5487..6638
                     /locus_tag="IBJ56_001555"
     CDS             5487..6638
                     /locus_tag="IBJ56_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HAM3417810.1"
                     /translation="MKEVAIYIYMLAVKITGCLARIFPVKQKVVLLVSFPENSTAIIK
                     QMNEMKVTPKTVVFYDPRVDVTGFNFDFIQLKPKKIKHFISLMFHLNTAKVVITDNYF
                     VELAGLKERKNVTCIQIWHANGALKKFGWEDKAAQKRSARDKKRFQEVYRCFSKVLVG
                     SDEMAAIFQRSFLLEDSHMLKLGIPRTDNFFNQQQLKENAERTNTKLHLSNKKKLLYA
                     PTFRDEELHSTTLHLDIAKMKQALGNEYQLILKLHPSISNDLDEVVDDFVVYADKETP
                     IETILPAVDILITDYSSIPFEFALLEKPMIFFTYDLEEYDKARGLSDGFLATIPGPFV
                     HTTEELIQLIEQEAFDLEMVRAFAAKWNKYSDGHSSERFVSFLKEQLEK"
     gene            6703..7086
                     /gene="tagD"
                     /locus_tag="IBJ56_001556"
     CDS             6703..7086
                     /gene="tagD"
                     /locus_tag="IBJ56_001556"
                     /EC_number="2.7.7.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate cytidylyltransferase"
                     /protein_id="HAM3417811.1"
                     /translation="MKKVITYGTFDLIHWGHIRLLERAKALGDYLIVAISTDEFNRIK
                     HKEAYHNFEHRKLILEAIRYVDEVIPESNWEQKLEDVKNRDIDIFVMGDDWEGEFDFL
                     KPYCEVVYLPRTDGISTSKIKDDLK"
     gene            7204..8694
                     /locus_tag="IBJ56_001557"
     CDS             7204..8694
                     /locus_tag="IBJ56_001557"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HAM3417812.1"
                     /translation="MTNLFQDDSLTLHTDLYQLNMMKAYFDDGLHERRSVFEVFFRDM
                     PFDSGFVVFAGLERIIHYMQNLRFTETDIAYLHDELGFDGPFLEYLRNFKFKGNILAA
                     KEGEFVFKTEPILQVEASLAEAQLIETALLNIVNFQTLIATKAARIRSVIDDETFAEF
                     GTRRAQEMDAAIWGTRAAYIGGCDSTSNVRAGKIFGIPVSGTMAHAMVQAYRDELEAF
                     RSYAKTHFDSIFLVDTYDTLKSGVPNAIKVAKEMGDKINFIGIRLDSGDMAFLSKKAR
                     QMLDEAGFTEAKIFASSDLDEHTILSLKAQKAKIDSWGVGTKLITAYDQPALGAVYKM
                     AAIADENDILQDSIKLSSNTEKVSTPGKKKVYRIITNEDGLKAEGDYIALADESLENV
                     DKLTMFHPVHTYIMKTVENFTARELLVPIFQNGELVYDMPSLDEIKAYKEENLALLWD
                     EYKRTVRPEQYPVDLSVKCWKNKMRNIEKVRKSVQLHSPVELDMPF"
     gene            8706..9530
                     /gene="nadE"
                     /locus_tag="IBJ56_001558"
     CDS             8706..9530
                     /gene="nadE"
                     /locus_tag="IBJ56_001558"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HAM3417813.1"
                     /translation="MEIRERILADMQVAETIDAHEEIRKSVEFLKAYLKKNTFLKSFV
                     LGISGGQDSTLTGKLAQMAISEMRAETGDDEYQFFAVSLPYGTQLDESDRQDALNFME
                     PDNRLTVNIKASVDASVAALAEAGVELSDFAKGNEKARERMKVQYAIAAMHKGVVVGT
                     DHSAEAVTGFYTKYGDGGTDINPLFRLNKRQGKALLKELGCPEHLYLKKPTADLEDNK
                     PALPDEVALGVTYDQIDDYLEGKEVPADAAAKIENWFIKTEHKRHMAITIFDDFWK"
     gene            9543..9851
                     /locus_tag="IBJ56_001559"
     CDS             9543..9851
                     /locus_tag="IBJ56_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HAM3417814.1"
                     /translation="MKVGYGLLTAFYTHPGEKDNLVKILLEAAEGLDDYNTCIQYIVS
                     ESETEPDTVFVSEIWVDKGHHAASLDNPAVQETIARAKPMIKEIKQIQELDILGGKGI
                     "
     gene            9911..10315
                     /locus_tag="IBJ56_001560"
     CDS             9911..10315
                     /locus_tag="IBJ56_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417815.1"
                     /translation="MKTLMIVCAGGATSSLMAQNVVKSATSEGMDAVLLFPDDVKYKD
                     SFREKYSERDLVVVMGPVGAITAGKFRDYKEQVDAVLVAPQVKYMYKTVEEVLGELSI
                     PCANIDSLDFGRMRGDKILTQGLALMDAKNSK"
     gene            10444..12000
                     /gene="guaA"
                     /locus_tag="IBJ56_001561"
     CDS             10444..12000
                     /gene="guaA"
                     /locus_tag="IBJ56_001561"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HAM3417816.1"
                     /translation="MFKIMKDFTEQEKIIVLDFGSQYNQLITRRIREFGVYSELHPHT
                     ITVEEMKALNPTGIIFSGGPNSVYDEDAFRADERILDMGIPILGICYGMQLMTTHFGG
                     KVERAKDREYGKADIHVEKPNRLFAGLPTDQVVWMSHGDLVVEEPAGFEVTITSKSCP
                     IAGIADEERSLYGVQFHPEVRHSVYGNELLKNFALNVCGCKGDWTMENFSEVEIAKIQ
                     EIVGDKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIFVDHGLLRKGEADQVMATLQGE
                     FNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEFLAQGTLY
                     TDIIESGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALGTELGMPDAIVW
                     RQPFPGPGLGIRVLGEITEEKLEIVRDSDYILREEIKNAGLEREIWQYFTALPNIRSV
                     GVMGDGRTYDHTVVVRAVTSIDGMTADWARIPWDVLEKISVRIVNEVDHVNRVVYDIT
                     SKPPATVEWE"
BASE COUNT         3935 a         1910 c         2648 g         3591 t
ORIGIN      
        1 cagatctttc acatcatctt tgatttcagg atgcttcaaa gcgaattgca ttgttgtttg
       61 gataaagccg aatttatcgc caacatcaaa acgctgtcct tcaaagtcat aagcaaatac
      121 acgttgtact tcatttagac tattgattgc atcggttagt tgaatttcgc ctcctgcacc
      181 tggtttttgc gtttctaaga agtcgaaaat ttgtggtgtt aataagtaac ggccaaggat
      241 agctaaatca gacggtgcat tagcaggatc tggtttttcc acaaaacctt tcacattata
      301 taaattctta tcatattcat taattggatc aataatacca taacgatatg tctcttcgtg
      361 agggacagtt tggactccaa tgacggaact atgcgtcttt tcatattgat tcattaattg
      421 tttggaacaa gggattttgg attcaacaat atcatcacct aacataacga taaatggttc
      481 attacccaca aagccttttg cttgaaggat ggcatcacca agtccttttg gtttcgcttg
      541 acgaataaag tgcaaattaa tgttagtagt ttgttctact aaatgtagta attcaagttt
      601 atttttttcc cgtagattgt tttcaagttc aggaacggaa tcaaaatggt cttcgatagc
      661 acgtttacct ttaccggtta caattaaaat atcttctatg ccagatgcta ctgcttcttc
      721 tactatgtat tgaatagttg gtttatccac aattggtaag atttctttag gcattgcttt
      781 tgttgctggt aaaaagcgcg tgcctagacc agcagctgga attacagctt tttttactct
      841 catatttaat aatctccttc taatctatat tcatatagtc ccacttaatt atacataggg
      901 ggctttgggt ttacaagttt ttaatggttt aggttataaa atgatgcgtt tttacaaggt
      961 gtttaattaa aatacttctt agcgcagata gaagctagtt tgttatacaa gttttatgtt
     1021 ataatgtaac atgtcaatat aaaaaacagt taaaggagat tagaggatga tatacgctca
     1081 aattttagct ggaggaaaag gtacgcggat gggtaacgtt agcatgccaa aacaatttct
     1141 acctctaaat ggtaaaccaa ttattgttca taccgttgaa aaatttattc taaatactcg
     1201 atttgataaa attcttattt cctcaccaaa agaatggatg aaccacgctg aggataatat
     1261 taaaaagtat atttctgatg atcgtattgt agtcattgaa ggcggagaag accgcaatga
     1321 aacaattatg aatggtattc gttttgtgga aaaaacatat ggcttaacag atgatgatat
     1381 tatcgtgacg catgatgctg ttcgtccatt tttaacacat cgtattattg aagaaaatat
     1441 agatgctgca cttgaaacag gagcagtaga tactgttatt gaagcacttg atacaatcgt
     1501 tgaatcaagc aatcatgagg tgattacaga tattccggtc agagatcaca tgtatcaagg
     1561 acaaacaccg caaagcttca atatgaaaaa agtattcaat cactaccaaa atctaacacc
     1621 agagaaaaaa caaattctaa cagatgcatg taaaatttgt ttgcttgctg gcgatgatgt
     1681 gaaattagtt aaaggtgaaa ttttcaacat taagattacg acgccttatg atttgaaagt
     1741 agcgaatgcg attattcagg agcggatagc caatgattaa tcaagtatac agacttgtgt
     1801 cagagagaca gtttgaagtt gccaatgtgg acgaatcatt aacaggtgat gtggttgttg
     1861 ttcgaccgac tcatttatct atttgtgcgg cagatcaacg ttactataca ggttctagag
     1921 ggaaagaaat gttatctaaa aaacttccaa tggcgcttat tcatgaaggt gttggggaag
     1981 ttgtttatga tgcaacgaaa gaatttaaac caggtacaaa agttgtcatg gttccaaata
     2041 caccatttga gaatgatcca gtcattgctg agaactattt acgttcgagt aaattccgtt
     2101 ctagtggtta tgatggttta atgcaggatt atgtgttcat gcgtcgtgat cgtgtggtgg
     2161 cactgccgga tgatattaac atgaaagtag ctgctttctc agaactgatt tccgtggcag
     2221 ttcacgctat tttacgcttt gaaggtaaaa gtaatgctaa ccgggaatct ttcggtgtgt
     2281 ggggtgatgg gaacttaggt tttatcactt ctttactact aaaaaattgg taccctgata
     2341 gcaaagttta catttttggg aaaacaccat ataaattaga cttcttttct tttgtggatg
     2401 gtgcttatgc aattgatgat gttccggctg atttagttat tgatcaagca ttcgaatgtg
     2461 ctggaggaat gggtagtcag tatgcggtga gtcaaattat tgatgtcatt aaaccagaag
     2521 gaaccatttc cttacttggt gtttcggagt atccgattga atttaattca cgtatggtac
     2581 ttgaaaaagg actaaccgtt tatggaagta gtcgtagcgg tcgtgttgat tttgagaaaa
     2641 cagtggagtt cttatcaacc aataaacgtg gggtagaata tctgcaaaat cttgttgggg
     2701 aagttcatac agttcattcc attcaagatg taatcgaagc gtttgaagct gatttacgca
     2761 gtccatgggg caagagcgtt atggagtgga agatataata aaacattggg gagtttaggc
     2821 tgtaagctaa tgaatttgtt tgctaaagta ttttaggaag caagaaaatc gaatgtaagt
     2881 attcgatggt catttgctaa atccttaact tcccagcttt tatatggaga gggaaaaaga
     2941 atgaaatttg ctattataat gcctttttac aatgccgaaa aaaggttagc actatccata
     3001 gatagtataa ttaagcagtc ttacagcttt ttgaagcatg tggaagtact gcttattaat
     3061 gatggaagca cggatggaag tggcgctatc gcaaatcgtt acgctacaaa atatcctaac
     3121 aatattcgcg tgttgaccgt tccaaatggt ggaccggcaa aagcgcgtaa tatcggaata
     3181 cataatgtaa gtgaagatac tgattttgtt ggttttttag acgccgatga tataatgtca
     3241 gagaatatgt tagcgagtat agttacattt ctaaatgagt ctaacgtttc tatgcttgtg
     3301 ccagcttttt attacttaga tgattttgga agtaagaaaa aaatttcacc acataaatta
     3361 aattaccgtt ttgcgaatgg aaatcgagtt gctgatattg aaaaagaacc ggaagcaatt
     3421 catttttata ttggcggtac ttttttacgt tatgattgtt tgaaagaatt tacttttgat
     3481 gagtcgcttt attttgcgga ggatcagtta ttaattaccc agttcttact gaaatatcgg
     3541 agctatggct tgattgcgga tgcggggtat tattactatc gtgatctaaa gcaaaaaggt
     3601 tctttagtaa gttcgtcttg gaaaaaacca gaacgataca cgcctttttt gcagaaagta
     3661 tatcaaacct atttaactga ctcgaaagaa atatatggca aagtgattcc ctatgtgaag
     3721 tatctaattg cgtaccatgc aaaattgttt ttttataaag aaaatactta tttccgggaa
     3781 gttttaagcg agtcggagca agcgattttc gtgcaagaat tacaaaagat tttgcaggaa
     3841 gtcggagcaa gtacgattat ggaattagac acacctctcg tagtaaaaga aatgatgtgc
     3901 tcgattttgc aaaatggatg gccgctgcaa tttgaaacgg ctgaaaaaca agatattcca
     3961 cttgtgacag taaaagaaaa ttatcgtatc ggcaaaacag tcgcgattga attacttcta
     4021 gaagaagcgg atattcatga cgtgaaatgg gttgctcgca cgtcttttaa agaaatgcca
     4081 gctcggttag tcaaacgaaa agagaatcaa actatttggg atgtcgttgt cagagaaaaa
     4141 ggcacagtag aaaaagctgt atttaaatta aaaccgtatc aaacgaaagc gcgtcttttt
     4201 tatcaagatg aggaaaagga tacgcctatc gccgacataa atatcataag tagcatctta
     4261 gggaaattaa aacgaaatcg agcgttaaag cgaaagttta aacagggggg agtatcctga
     4321 tgaagttagt acaaaaagtg tattatttgt tgtttagatt agtgggattt ttaccgcgaa
     4381 aaaaagattt agtgatattt gaaagctttt caggtaagca atatagctgt aatccacggg
     4441 ctatttatga atatatggag gagcataatc cggaatacga attattatgg agtgttaatc
     4501 caaaattcgt ggctgttttt gaagcttacg gagttcctta tgttaaacgt ttttctatta
     4561 gctggttatt taaaatgggg cttgctaagt attggatttc taatagtaga cttcctttag
     4621 aactaccaaa accgaaaaaa acaatctatg tgcaaacttg gcatggaaca cccttaaaaa
     4681 aattaggcgt ggatattgat gaagtgcaca ttccagggca aacaacggaa cagtacaaag
     4741 ctgattttgt aaaagaagca cagaaatggg actacttaat ttctcctaat gcttattcta
     4801 gtgctatttt tagacgggca tttggtttta ctggagagat gattgagtcg ggatatccgc
     4861 ggaatgatat tttatttagt accgataaag agctgaaaat agctaatatt aaaaaagagc
     4921 taaatatccc agaagagaaa aaagttgttt tatatgcgcc aacatggcgt gataatgatt
     4981 tttatgaagc tggaagatat aaatttgatt taaaaatcga tatcgcaaaa atgcaagaaa
     5041 aattggggaa tgagattgtt ttacttgttc gcatgcatta tttagtcgcg gaacattttg
     5101 atttcacgca atatggtgat tttgtccgcg atgcttcaaa ccatgaagat atacgcgatt
     5161 tatacttagt gagtgatttg ttgattactg attattcctc tgtatttttt gattatgcga
     5221 atttacagcg tcctatgctt ttttatacgt atgatttggc ggaatatcgt gatacgttac
     5281 gtggctttta ctttgatttt gaaaaaaatg ctcctggtcc gcttgtggaa acgaatgaag
     5341 aattaatgag tgaacttgaa aaaatgcttg aaaatccacc taaaatagaa gacagctttt
     5401 tggagcagtt ttgtacttgg gaagatggtc atgcagcaga gaaaacagtg aaaatcgttt
     5461 ttgctgaaaa ataggtggtg ggaattttga aagaagtagc aatttatatt tatatgcttg
     5521 ctgttaagat aactggctgt ttggcgagga tttttccagt taaacaaaaa gtggtactgt
     5581 tagttagctt tccggaaaat tccactgcaa ttataaagca aatgaacgaa atgaaagtta
     5641 cgccaaaaac ggttgttttc tatgatccaa gagtggatgt gaccggtttt aattttgatt
     5701 ttatccaatt aaagccaaaa aaaatcaagc actttatctc gttaatgttc catctgaata
     5761 cggcaaaagt tgtcattacg gataattatt tcgtggaatt agctggatta aaagaacgta
     5821 aaaatgtgac gtgcattcaa atttggcatg cgaatggggc attgaaaaaa ttcggctggg
     5881 aagataaagc agcgcaaaaa agaagcgcgc gcgataaaaa aagatttcaa gaagtgtaca
     5941 gatgtttttc aaaagtgctc gtcggatcgg atgaaatggc agcaattttc caaaggtcgt
     6001 ttttactaga agattcgcat atgttgaagc taggaattcc gagaacggac aatttcttca
     6061 accaacaaca attgaaagaa aatgccgaaa ggacaaatac caaattacat ctttccaata
     6121 aaaagaaatt attatatgcg ccgacgttcc gcgatgagga acttcatagt actacgcttc
     6181 atttagatat cgcgaagatg aaacaagcac tcggaaatga gtaccaatta attttaaaat
     6241 tacatccatc tattagtaat gatttagatg aagtagtgga tgattttgtt gtctatgcgg
     6301 ataaagaaac gccaatcgag acgatactac cagccgtaga tatattgatt actgattatt
     6361 catctattcc atttgaattt gctttattag aaaaaccaat gatctttttc acgtatgatt
     6421 tagaggaata tgataaggct agaggtttgt cggatggctt tttagcaacg attccggggc
     6481 cattcgttca tacaacagag gaactaatac aactaattga gcaagaagca ttcgatttag
     6541 aaatggttcg tgcttttgcg gcgaaatgga ataaatattc agacgggcat tctagtgagc
     6601 gcttcgtttc ctttttgaaa gaacagctag aaaagtagca ctgctaacaa gtagagaaat
     6661 ttttgttttc ttgatatact actaaagaaa gtaggtgggc tgatgaagaa agtaattaca
     6721 tatggcacat ttgatttgat tcactggggg catattcgtt tattagaacg agcaaaagct
     6781 ttaggtgatt accttattgt agccatttca accgatgaat ttaatcgaat caaacacaaa
     6841 gaagcatacc ataactttga acatcgcaaa ttaattttag aggcgattag atatgtcgac
     6901 gaagtgattc cggaaagtaa ctgggaacaa aaattagaag atgttaaaaa tcgtgatatt
     6961 gatatttttg tgatgggtga tgattgggaa ggcgagtttg acttcttaaa accttattgt
     7021 gaagtcgttt atttaccacg aacagacggt atttctactt ctaagattaa agatgattta
     7081 aaatagtcgt agcacaaaac aggcagacca gtaatgttca attattaggt ggtgggcttg
     7141 ttttgtgcta ttattatgta taaataataa cgcaaagaac tagttatgat aggagcagaa
     7201 gaaatgacaa atttatttca agatgatagt ctaacgctgc atacagactt atatcaacta
     7261 aatatgatga aagcgtattt tgacgatgga cttcatgagc gtagatcggt atttgaagtg
     7321 tttttccgag atatgccatt tgattcgggt tttgttgtgt ttgcggggct agaacgaatt
     7381 attcattata tgcaaaattt acgttttaca gaaacggata ttgcttattt acacgacgaa
     7441 cttggttttg atggaccttt tctagaatat ttacgtaatt ttaaatttaa aggaaatatt
     7501 cttgctgcga aagaagggga atttgttttt aaaacagagc caatccttca agtagaagca
     7561 agcttggcgg aagcacaatt aattgaaaca gctttgctta atattgtgaa tttccaaacg
     7621 ctgattgcaa caaaagcggc gcgaatccgt tctgttattg atgacgaaac gtttgcagaa
     7681 ttcggtacaa gacgtgcaca agaaatggat gcggctattt ggggcacacg agcggcttac
     7741 atcggcggtt gtgattcgac gagtaatgtt cgcgctggaa aaattttcgg tattcctgtg
     7801 tctggtacga tggcacatgc gatggttcaa gcttatcgcg acgaactaga agcatttaga
     7861 agttacgcaa aaacgcattt tgattcgatt ttcttagtag atacatacga tacgctaaaa
     7921 tctggcgtac caaatgcgat taaagtggcg aaagaaatgg gcgataaaat taactttatc
     7981 ggcattcgtt tagatagcgg ggatatggct ttcttatcta aaaaagcacg ccaaatgtta
     8041 gatgaggctg gttttacaga agcaaaaatc tttgcttcga gtgacttaga cgaacatact
     8101 attttatcgt taaaagcgca aaaagcaaaa atcgattctt ggggcgttgg cacaaaacta
     8161 atcaccgctt acgaccaacc agcattaggt gccgtttaca aaatggcggc aattgctgat
     8221 gaaaatgata ttttacaaga ttcgattaaa ctttcgagta acaccgaaaa agtgtcgact
     8281 cctggtaaaa agaaagttta ccggattatt acgaatgaag atggcttgaa agcggaaggc
     8341 gattatattg ctttagcgga cgaatcactc gaaaatgtgg ataaactaac gatgttccac
     8401 ccagttcata cgtatattat gaaaacagtc gagaacttca ccgcgcgtga gctacttgta
     8461 ccgattttcc aaaacggaga acttgtatat gatatgcctt cactagatga aattaaagca
     8521 tataaagaag agaacttggc gctactttgg gacgagtaca aacgaacagt tcgtccggag
     8581 caatacccag ttgatttaag tgtaaaatgt tggaaaaata agatgcgtaa tatcgaaaag
     8641 gtacgtaaaa gtgtccagct tcattcacca gttgaactag atatgccgtt ttaggaggaa
     8701 ttataatgga aatcagagaa agaattttag cagatatgca agtggcagaa acgattgatg
     8761 cacacgaaga aatccgaaaa agtgtcgagt ttttaaaagc atatttaaaa aagaatacgt
     8821 tcttaaaaag ctttgttctt gggatttctg ggggacaaga ttcgacttta acaggaaaac
     8881 tagcacagat ggcgataagc gaaatgcgag cagaaacggg tgacgatgag taccaattct
     8941 tcgctgtgag cttgccatac ggaacgcaac tagatgaatc ggaccgtcaa gatgcactga
     9001 actttatgga accagataat cgtttaaccg taaatattaa agcttcagtg gatgcgagtg
     9061 ttgcggcgct tgcggaagcg ggagtggaac tatctgattt cgctaaaggt aacgaaaaag
     9121 cgcgcgaacg gatgaaagta caatacgcaa ttgcagcgat gcataaaggc gtagtagttg
     9181 gaaccgatca ctccgcagaa gcagttactg gcttttatac gaaatacggc gacggtggaa
     9241 cggatattaa tccactattc cgcttgaata aaagacaagg caaggcgctt cttaaagagc
     9301 ttggctgccc agaacatcta tatttgaaaa aaccgacagc agatttagaa gataataaac
     9361 cggcacttcc tgatgaggtc gcgcttggtg tgacttatga ccaaattgac gattacttgg
     9421 aaggtaagga agttccagca gatgctgcag caaaaattga gaactggttt attaaaaccg
     9481 aacataaacg ccatatggca attactatat ttgacgattt ctggaaatag gaggctgttt
     9541 aaatgaaagt tggttatggt ttattaactg cattttatac acatccagga gaaaaagata
     9601 atttagtgaa aattttgctt gaagcggctg aaggattgga tgattacaac acgtgtattc
     9661 agtatattgt cagcgaatct gaaaccgagc cagacacggt gtttgtttct gaaatttggg
     9721 tcgacaaagg gcatcatgca gcatcacttg ataacccagc tgtacaagaa accattgcac
     9781 gcgcaaaacc gatgataaaa gaaataaaac aaatacaaga attagacata ctcggtggaa
     9841 aaggcatata attttaacaa caagaatgat tctggggctc tcctggaatc attttttgga
     9901 gggatgagaa atgaaaacgt tgatgattgt ttgtgctggt ggtgcgacgt cgagtttaat
     9961 ggcgcaaaat gtcgtgaaaa gcgcgacgtc agaaggaatg gacgctgttc tactatttcc
    10021 agatgatgtg aaatataaag atagttttcg tgaaaaatac agcgagcggg atttggttgt
    10081 cgtgatggga ccagtcggcg caattacagc tgggaaattc cgtgattata aagaacaggt
    10141 tgacgcggtt ttagtagcac cacaagtgaa atatatgtac aaaacagtgg aggaagtatt
    10201 aggcgaacta agtattcctt gcgctaatat tgattcactc gatttcggtc ggatgcgtgg
    10261 agataagatt ctcacgcaag gtctagcctt aatggatgcg aaaaattcca aataaggtgt
    10321 tgcaacttta gaggggaaac gttaaaatga aagaagatga aaaggacaag tgatttgtcc
    10381 ttttcttata ttattgtgaa gtaaccgcga ttttgcggtt tcattttata gataagggtg
    10441 gttttgttta aaattatgaa agactttacc gagcaagaga aaattatcgt tctagatttt
    10501 ggtagtcagt acaatcaact aattacgcgc cgcattcgtg agttcggtgt gtatagtgaa
    10561 ttacatccgc atactattac agttgaagaa atgaaagcac taaatccaac ggggattatt
    10621 ttttcaggag gacctaacag tgtgtatgac gaagatgcct tccgcgctga cgaaagaatc
    10681 cttgacatgg gaattccgat tttgggaatt tgttacggca tgcaattaat gacaacgcac
    10741 ttcggtggca aagtagaacg tgcgaaagac cgcgaatacg ggaaagcgga cattcacgtt
    10801 gagaagccaa accgtttatt tgctggacta ccaaccgatc aagttgtttg gatgagtcac
    10861 ggcgatttag tcgttgagga gcctgctggt tttgaagtaa caattactag taaatcttgc
    10921 ccaattgcag gtattgcgga cgaagaacgt tcactttacg gcgtgcaatt ccacccagaa
    10981 gtacgtcact cagtttacgg caacgaatta ctgaagaatt ttgcattaaa tgtttgtggc
    11041 tgtaaaggcg actggacaat ggagaacttt agtgaagtag aaattgctaa aatccaagaa
    11101 atcgtaggcg acaaaaaagt cttgcttgcc ctttctggcg gcgtagattc ctctgttgtt
    11161 ggtgtgttaa ttcataaagc aatcggcgac caactaactt gtattttcgt agaccatggc
    11221 cttcttcgca aaggggaagc tgaccaagta atggcaacat tacaaggcga attcaacatg
    11281 aacatcatca aagtagatgc gaaaaaacgc ttcatggaca aacttgctgg cgtttctgac
    11341 ccagagcaaa aacgtaaaat catcggtaac gaattcattt acgtattcga cgatgaagct
    11401 aacaaactag acggcgtaga attcctagct caaggaacac tttacacaga catcatcgaa
    11461 agtggtacag caactgccca aacaatcaag tctcaccaca atgtaggcgg cttaccagaa
    11521 gatatgcaat ttaaactaat cgaaccatta aatacacttt tcaaagatga agttcgcgca
    11581 ctaggaacag aacttggcat gcctgacgca atcgtttggc gccaaccatt cccaggccca
    11641 ggcttaggaa tccgcgttct tggcgaaatt acggaagaga aattagagat tgtccgcgat
    11701 tctgattaca tcttgcgtga agaaatcaaa aacgcaggtc tagaacgcga aatctggcaa
    11761 tactttactg ctcttccaaa tatccgtagc gttggtgtta tgggtgatgg cagaacatat
    11821 gaccatactg tggttgttcg tgcggtgacg agtattgatg gtatgacagc cgattgggca
    11881 cgtattccgt gggatgtact ggagaaaatt tcggtacgga ttgtgaatga agtggatcac
    11941 gtgaatcgtg ttgtttatga tattacgagt aaaccaccag ctacggttga gtgggagtaa
    12001 tgaataaaat aaaatgccat ttttacgctg atttaatagg gatttacgat ttataggaag
    12061 gttgttttta gttaaaatta attg
//
LOCUS       DABQVC010000083        12044 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.083,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000083 DABQVC010000000
VERSION     DABQVC010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12044
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.083"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            1..301
                     /locus_tag="IBJ56_001562"
                     /pseudo
     CDS             1..301
                     /locus_tag="IBJ56_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725646.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2705 domain-containing protein"
     gene            317..946
                     /locus_tag="IBJ56_001563"
     CDS             317..946
                     /locus_tag="IBJ56_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417817.1"
                     /translation="MIKIVNLQKKIKRTEVLTNINYSFEPGKIYGVFGKNGSGKTMLL
                     RSLAGLIIPTSGKIFIDNKELHHDISFPPSMGIIIENMELLPQFDARTNLKILSKIKN
                     IASDEDIDNAIDRVGLSPHIDKKVKKYSLGMKQRLNIAQAVFEKPAVILLDEPTNAID
                     DQGIELINQLLLEEKKRGATIIIASHHKEDIEPLCDMSIRMDQGKIIHD"
     gene            939..1559
                     /locus_tag="IBJ56_001564"
     CDS             939..1559
                     /locus_tag="IBJ56_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417818.1"
                     /translation="MTKTKFVIFIALTVITLLLFLVPKGIQYLKSQNPELLNTAESIK
                     LQAGEYTVGKDIKVGIYDMQVTKGSLSYYSTRLSKGDEIIGINLLDANKLYFEGSGEV
                     ELTPAEFNPIKPSANIFTIQHSGSYEVGKQIPAGKYSLTYTIDKSSKKKPFIQILPSY
                     TDDARIEIQFETKPAYNINLKTGEILTVSKTISEELDTMTVLLKKN"
     gene            complement(1708..2583)
                     /locus_tag="IBJ56_001565"
     CDS             complement(1708..2583)
                     /locus_tag="IBJ56_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HAM3417819.1"
                     /translation="MLAKGDLIGIICCSDGRKKEDEKDLKRLKQVLEKEFGLQVVFAK
                     TIFQIDDSPFSGTPEERAAELMKLYQNMDVKMIFDISGGDAANQVLPHLNFNIIKKAA
                     KPFIGYSDLTVILNAIFAKTKQPGFNYLLRNLVGEASEIQRVQFQKTFFENQIAINGK
                     SLNEFEWSLGEIVGGNIRCFLKLAGTEFMPDVSNKIILLESLGGKEAKIASYVAQLEQ
                     LGVFSKCLGIVVGEHTEAEKNGEYDRIGILYQQIGLKYKLPVFRTKEIGHSSEAKPCL
                     IGTKVNVSRETLTNF"
     gene            complement(2665..4569)
                     /locus_tag="IBJ56_001566"
     CDS             complement(2665..4569)
                     /locus_tag="IBJ56_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HAM3417820.1"
                     /translation="MKYEQLAKDILKNVGGKENINSVFHCITRLRFKLKDENIANTKE
                     IEKLDGVISVIKSGGQYQVVIGNHVPDVFKAVLEVGGISAEGDEGSSAPATGNIFNRF
                     IDMISGVFTPVLGVLAATGMIKGFTAMFVAFGWITVTSGTYQLLYAIGDCLFYFFPIF
                     LGYTAMKKFGGNIFIGMAIGGALVYPTLAGITAGDPLYTLFAGTIFESPIHVTFLGIP
                     VILMSYASSVIPIIVATYFGSKVEKGFKKIIPDVIKTFVVPFCTLLIVVPITFIVIGP
                     IATWAGQLLGAGTIWVYNLSPIIAGLILGGFWQVFVIFGLHWGLVPVAINNLTVLGHD
                     PILAMTFGASFAQIGAVLAVFFKSRNKKIKSLSIPAFISGIFGVTEPAIYGVTLPLKK
                     PFIMSCIAGGIGGGIIGFAGSQTYIMGGLGIFGLPNFFKPGSGISGEFWWVVIAIVIS
                     FILGFILTYVVGFKDPADVVVEQSNTVEGETLIERETIPAPVVGEIVTLADVKDEAFS
                     SGALGKGVAIIPTVGRVVAPAAGTVTTIFPTGHAIGITTKDGAEVLIHIGMDTVQLEG
                     KFFTAHVKQGDVIEKGQLLTEFDIEGIKAAGYDVTTPVVVTNSNQYLDVMITDAKEAK
                     LEERLITLVI"
     gene            complement(4774..5415)
                     /locus_tag="IBJ56_001567"
     CDS             complement(4774..5415)
                     /locus_tag="IBJ56_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HAM3417821.1"
                     /translation="MILKEACIENTTNLVNVIEAGANRVELCDNLAEGGTSVSYGIAK
                     HVVKICHEQNVSVMAMVRPRKGNFVYTKEEISVMIDDILMYKKIAVDGVVFGCITDSG
                     LLDKPAIIELLKATAGLEVTFHMAFDELVDSEKLPAIDWLAEQDVTRILTHGGDGAKL
                     PEETFIQWRKYIDYAAGRIIILPGGGIKSHNMEWITKETGAAEIHGTDLFGER"
     gene            complement(5470..6174)
                     /locus_tag="IBJ56_001568"
     CDS             complement(5470..6174)
                     /locus_tag="IBJ56_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007476622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar isomerase domain-containing protein"
                     /protein_id="HAM3417822.1"
                     /translation="MGLTFFDKARELTEELEKTQAESIHQAAKLVADSIMNDGIIQAF
                     GSGHSYAAAIEVCGRAGGLIPSKVIMDPAGGYYESIEGVGSLLTHRLQAKPNDIFFLI
                     SNSGRNPMGIELAEWIKSQGCKLIVVTALDASQTAASRHSSGKLLYEFADVILDNRSV
                     QGDAALELDGLEGKVCGTSSFSAVLLLQQTIYEAVELMLEKGYTPPVYRSANIDGGYE
                     YNFAIEDKFADRIFHF"
     gene            complement(6202..7029)
                     /locus_tag="IBJ56_001569"
     CDS             complement(6202..7029)
                     /locus_tag="IBJ56_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HAM3417823.1"
                     /translation="MKMANTKTEQDFEKVLKRRDLIAANFRWLFASQICWNYERMMST
                     GYLYSILPTLRKLYKTDDDLKDMMNMHNQFFNTNPMVGGLILGMDMAIEEREKKASKE
                     VVTGLKTGLMGPFAGVGDTIFGVILPTIFGSIAAYMGLQGNVTGVVIWVLVNILVVGA
                     RFTLLPLGYKQGAKLVTEFADRLNALTDAAILLGVTVVGALIPTVIKATVPFVYKSGK
                     VELKMQDMLDQIMPSLVPVLLVALIYALLGHKKMTSTKAILLVMVIAIILFNLKILG"
     gene            complement(7004..7807)
                     /locus_tag="IBJ56_001570"
     CDS             complement(7004..7807)
                     /locus_tag="IBJ56_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HAM3417824.1"
                     /translation="MDLAVWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMG
                     DMVLGLAIGATLQLMVLGVGTYGGASIPDFTTGAIVGTVFAVLSGQDAEFAIGLAIPV
                     GLLMVQLDILARFTNTFFLHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLT
                     FGQSVVDFILNEIPEWLMGGLRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAY
                     LKVPMLGVALIGVALAIIYFKQNFKNPVAAGANGAALVGEENEDGEYED"
     gene            complement(7830..8318)
                     /locus_tag="IBJ56_001571"
     CDS             complement(7830..8318)
                     /locus_tag="IBJ56_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417825.1"
                     /translation="MGSNGIKHVRVDERLIHGQVATMWTNTIKATRIMIVDDAVVKNE
                     MEKVALKTAVPAGVKLSILTVKGAANNINNDKYAGQQVFLIVKSPHALRGLVDAGVEL
                     PQINVGNMSTKAGSRQIKKSVSVTDENLEDFDYLSQKGIKITAQMVPSEDAVEFASLL
                     KK"
     gene            complement(8318..8719)
                     /locus_tag="IBJ56_001572"
     CDS             complement(8318..8719)
                     /locus_tag="IBJ56_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3417826.1"
                     /translation="MNFIIAAHGRYAQEVKNSCQMITGQTTNISAITFTEEMGVTDVL
                     DAYTAVYSPVNETAIIVDIVGGTPCNAAQMFSTKHPEVKVVSGLSLGLLIPLSLGESL
                     EEAMLGAKENIQFVEQKASYTIVSDDGEEED"
     gene            complement(8735..9475)
                     /locus_tag="IBJ56_001573"
     CDS             complement(8735..9475)
                     /locus_tag="IBJ56_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3417827.1"
                     /translation="MAEPKYAIIINDIKRLISDGTFKPGEKIYSEDELKKKYNVSNTT
                     VVRALHELVRAGILARYQGKGTYVSKSIINEEVIFNEYTTVPNGRFNRKTKITNEHTK
                     VVAINEIQDARIAKKLQIPPENMIVHFQRIRLIDDVPWTVQNNYMAKSNLINVDLTNF
                     ERFNSLSEVIKELYGINILHEAMKERIEVEFPVKDKNNFKLLEIDSELPLYHIERITY
                     VPEGQPYEYIESYLRHNFYSIEIEKKKQ"
     gene            9716..10537
                     /locus_tag="IBJ56_001574"
     CDS             9716..10537
                     /locus_tag="IBJ56_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HAM3417828.1"
                     /translation="MGNSFSKWGKWILVLGLMFSVFSVSTAGQAAAKETVINKQMVTT
                     ASLNVRSTNSTSGKVIGWLKSNTKFKAIAKTSNNWYRFSLKGKNGYVSGKYVKAATAA
                     PAPKPSTPKIVQMNVPLIVQRPQLPTGCEITNIAMMLRYAGKNVDKVKLAKEMKRHKS
                     NPNYGFVGNPFSKSGWTIYPPALVNQVKKYTGSAKNMTGTNLAGIKNQLNKKRPVVAW
                     VSNFHGFSVHAITITGYDKNNFYYNDSWSGQKNARISQSYFNTCWSKQAKRAISY"
     gene            complement(10584..12017)
                     /gene="ascB"
                     /locus_tag="IBJ56_001575"
     CDS             complement(10584..12017)
                     /gene="ascB"
                     /locus_tag="IBJ56_001575"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAM3417829.1"
                     /translation="MTESKFPKDFLWGGAVAANQCEGAYLEDGKGLSLVDILPTVEDG
                     RWEALFNPSKALATDYGFYPSHESIDFYHRYKEDIKLMAEMGFKCFRMSISWPRIFPN
                     GDETTPNEKGLAFYDAVFDECHKYGIEPVVTINHFDTPLEVFKKYGGWKNRKCIDFYL
                     NFCEAIFTRYKDKVKYWMTFNEINMILHLPYIGGGLDVTKEDNPEEVKYQAAHHQLVA
                     SALATKLGHEINPENQIGCMLAAGNTYPMTCNPKDVWKSIEADREGYFFIDVQARGYY
                     PSYTKRFFKEHNINIKMEDGDLDVLRDHTVDYVAFSYYSSRLTSADPEKNKETEGNVF
                     ATLKNPYLKASEWGWQIDPLGLRITMNTIYDRYQKPLFIVENGLGAVDTVAEDGSITD
                     DYRIDYMREHVREMGEAIEDGVELLGYTPWGCIDLVSAGSGEMKKRYGFIYVDRDNKG
                     NGTLNRSKKKSFDWYKKVIETNGKDID"
BASE COUNT         3648 a         2472 c         2063 g         3861 t
ORIGIN      
        1 ttagtttgca atacctttta gagctattta tagatgcgca aaaagcttta ttacttataa
       61 atggatatgt aattatttct attcttatgg cagatttaat ctatcaaaac acaacagtta
      121 cttggcctta ttatttatta cttcctaatt atggttgggc tttagaactg gattaattcc
      181 gtttactaat acatctactt tactaatctc agtacctacc agtttaatta ttttgctagt
      241 agttttactt tgcgtgttta tagtcgctat taaaaaattt aaaacaacag acattttatg
      301 ataacggagg atttttatga ttaaaattgt taatttgcaa aaaaaaatca agaggacgga
      361 agtgcttact aatattaatt attcttttga gcctgggaaa atctacggag ttttcggaaa
      421 aaatggatct ggaaaaacaa tgttacttag atcgcttgct ggcttaatca taccaacaag
      481 tggcaagata ttcattgata ataaagaact tcatcatgat atttcttttc cgccaagtat
      541 gggcattatt atcgaaaata tggaattact tccccaattt gatgcgcgga caaatttaaa
      601 aatattatct aaaattaaaa atattgcaag cgatgaagat attgataatg ccattgatag
      661 agtaggatta tctccacata ttgataaaaa agttaaaaaa tattcgcttg gaatgaagca
      721 aagacttaat attgcacagg ccgtttttga aaaacccgct gtcatcttgc ttgatgaacc
      781 cacaaatgcg atagatgatc aaggtattga actaattaac caattacttt tagaagaaaa
      841 gaaacgcgga gccactatta ttattgcaag tcatcataaa gaagacatag aaccactttg
      901 tgatatgagt atccgaatgg accaagggaa aattatccat gactaagacc aaattcgtta
      961 ttttcatagc actgacagtc attacactgc ttctattcct cgttcctaaa ggtattcaat
     1021 atctcaaaag ccaaaatcct gagctattga atacagctga aagcattaaa cttcaagctg
     1081 gtgaatacac tgttggaaaa gatataaaag ttggaatata tgatatgcaa gtaacaaagg
     1141 gttcgctatc ttactatagt acaaggcttt ctaaaggcga tgaaataatt ggtattaatt
     1201 tactagatgc taataaactg tattttgaag gaagcggtga agtcgagctt acaccggcag
     1261 aatttaatcc cattaaacct tctgccaata tttttacaat ccaacactcc gggtcttacg
     1321 aagttggtaa acaaattcca gctgggaagt acagcctgac ttataccatt gacaaaagta
     1381 gtaagaaaaa accttttatt caaatattac catcttatac tgatgacgct cgtattgaaa
     1441 tacaatttga aaccaaaccg gcatataata ttaatttaaa aacaggagaa atcttgactg
     1501 ttagtaaaac aatatcagaa gaacttgata ctatgaccgt cttacttaaa aagaactaaa
     1561 aaaagaccga caatcaagtc ggtccaaaaa gggagtttag gattttaagg aattctacaa
     1621 ttagcaaaaa gggagtaaaa ctaattgtat tccttgctta caagttctat attaaaggtt
     1681 aattatgaat atttcgcaat aaaattatta aaaatttgtt aatgtttcac gtgaaacatt
     1741 aacttttgtg ccaattaaac atggttttgc ttcgctgcta tgaccgattt ccttagttcg
     1801 aaaaacaggc aacttatatt ttaatccaat ctgttgatat aagattccta ttctgtcgta
     1861 ttccccgttc ttctcagcct cagtgtgttc cccaacaact attcctaagc atttcgaaaa
     1921 cacacctaac tgttctaatt gcgctacata agaagcaatt ttcgcctctt ttccacctaa
     1981 actttctaac aaaattattt tattcgagac gtcaggcata aattctgttc ctgctagttt
     2041 taaaaaacag cggatatttc caccaacgat ctcacccagg ctccattcaa actcattaag
     2101 ggatttccca tttatcgcaa tttgattctc gaaaaatgtt ttttggaatt ggactcgttg
     2161 tatctcgcta gcttcaccta ctaaatttcg cagtaaataa ttaaagccag gctgcttcgt
     2221 cttcgcaaaa attgcattta atattacggt taagtcgcta tagccgataa aaggttttgc
     2281 tgcttttttt ataatgttaa aattaagatg tggtaatact tgattagccg catccccgcc
     2341 tgaaatgtca aaaatcattt ttacatccat attttgatat agtttcatta attcggctgc
     2401 tcgttcctca ggagtaccac taaaaggcga atcatctatt tgaaaaatag ttttcgcaaa
     2461 aaccacctga agtccaaatt ccttttctaa gacttgttta aggcgcttca aatccttctc
     2521 gtcttctttt tttcgaccat cagaacaaca aattatccct atcaaatcgc cctttgctaa
     2581 catccgctca ccgcctattt ttccctcagt ataacataaa aacagcttga gcagatttac
     2641 gcccaagctg tttattaatg aattttagat tactaatgtg attaaacgtt cttctagttt
     2701 cgcttctttt gcatctgtaa tcattacgtc taaatattga ttggagtttg ttactactac
     2761 tggagttgta acgtcatatc cagcagcttt gatgccttca atatcaaatt cagttagtaa
     2821 ttgacctttt tcgattacgt cgccttgttt cacgtgtgct gtgaagaatt taccttcaag
     2881 ttgaacggtg tccataccga tgtggattaa aacttctgca ccgtctttag ttgtaatacc
     2941 gattgcatga ccagttggga agatagttgt tactgttcct gctgctggag ctactacacg
     3001 tccaacagtt gggatgattg caacaccttt tccaagtgca ccggatgaaa atgcttcgtc
     3061 ttttacgtct gctaaagtta cgatttcgcc aactactgga gctggaattg tttcacgttc
     3121 gattaaagtt tcgccttcta ctgtgttaga ttgttctact actacatcag ctggatcttt
     3181 gaaacctact acataagtta agatgaaacc aaggatgaag ctgataacga ttgcgataac
     3241 tacccaccag aattcgcctg aaataccgct acctggtttg aagaagttag gaagaccgaa
     3301 gattccaagt ccacccatga tatatgtttg agaccctgca aaaccaatga ttccgccacc
     3361 aataccacca gcgatacagc tcatgatgaa tggttttttc agtggtaaag taacaccgta
     3421 aatcgctggt tcagttacac caaagatacc ggaaataaat gctgggatac taagagattt
     3481 gatttttttg tttctagatt taaagaatac tgctaatact gcaccgattt gagcaaaaga
     3541 tgcaccaaat gtcattgcta aaattggatc atgtccaaga acagttaagt tgttgattgc
     3601 cactggtaca agaccccagt gaagtccaaa gataacaaat acttgccaga aaccacctaa
     3661 aattagaccc gcgataattg gacttaagtt ataaacccaa attgttcctg ctcctaataa
     3721 ttgaccagcc catgtagcaa ttgggccaat tacgatgaaa gtgattggaa ctacgattaa
     3781 taatgtacag aatggaacta cgaaagtttt aattacatct ggaatgattt tcttgaagcc
     3841 tttttctact ttggaaccaa aatatgttgc tacgataatc ggaataacag aagatgcata
     3901 agacatcaag ataactggaa ttcctaagaa tgttacgtga attggagatt caaaaattgt
     3961 tcctgcgaaa agtgtataaa gtgggtcacc tgctgtaata cctgcaagtg ttggataaac
     4021 taaggcacca cctatagcca tcccgataaa tatgtttccg ccgaattttt tcattgctgt
     4081 gtaacctagg aagattggga agaagtagaa taaacaatcc ccaattgcat aaagtagttg
     4141 gtacgtacct gaagtaactg taatccaacc aaatgctaca aacatggcag tgaaaccttt
     4201 aatcatacct gttgcggcta atacacctag aactggtgta aatacgccag aaatcatatc
     4261 gatgaagcgg ttgaagatat tacctgttgc tggtgcacta cttccttcgt caccttcagc
     4321 tgaaatcccg ccaacttcta atactgcttt aaatacatct ggtacgtggt taccgataac
     4381 tacttggtat tgaccaccac ttttaatgac agagattacg ccatcaagct tttcaatttc
     4441 ttttgtgttc gcaatattct catctttcag tttaaaccga agtctggtaa tacaatggaa
     4501 aacactgttg atattttctt taccgccgac atttttcaag atgtcttttg ctaattgttc
     4561 atatttcatt ttgacgactt ccttcctctt tttggttttt tgggcaaaaa gaaaaaccta
     4621 agctcattcg aggactccac gcatacacgt gtcctacaaa tcagcttagg ttttgcccaa
     4681 tgaattggta acaatccttt gtgatgagat aaatatatca tataaagaaa acggttgcaa
     4741 gcttttttta aaaataaatt tatttgggga gttttagcgc tccccaaaca agtcagtgcc
     4801 atgtatttca gctgctcctg tttcttttgt aatccattcc atattgtgcg atttaattcc
     4861 tccacctggt aaaataatga ttcgacctgc tgcgtaatca atatattttc gccattgaat
     4921 aaaagtttct tcgggaagtt tagcgccgtc accaccatgc gtgagaattc ttgtaacgtc
     4981 ttgctcagct aaccagtcaa ttgccggcaa tttttccgag tctactaact catcaaacgc
     5041 catatgaaaa gtgacttcca gacctgctgt ggctttcaat aattcaatta tggctggttt
     5101 atctagcaat ccagaatccg taatacagcc aaaaaccacg ccatcaaccg ctattttctt
     5161 atacatcaaa atgtcatcaa tcataactga aatttcttct tttgtataaa caaaattgcc
     5221 ttttcgggga cggaccattg ccattacact tacattttgt tcatgacaaa ttttcaccac
     5281 atgtttcgca atcccgtaac ttacagaagt tccgccctcc gctagattat cacaaagctc
     5341 cactcgatta gctccagctt caataacgtt caccagatta gttgtatttt caatacaggc
     5401 ttcttttaaa atcattttct atcctccaaa aaagcgcgaa aataatgttc attttcgcgc
     5461 tcgtttttat tagaagtgga aaatacgatc agcgaatttg tcttcaatcg caaaattgta
     5521 ttcatagcca ccatcaatat ttgcactacg ataaactggt ggtgtatagc ctttttcaag
     5581 cataagttct actgcttcat agattgtttg ttggagaagc agaacggctg agaatgaaga
     5641 ggttccgcaa acttttcctt ctaatccatc taattcaagt gccgcatccc cttggactga
     5701 acgattgtct aaaataacat ccgcaaactc gtacaacaat tttccagaag agtgtcttga
     5761 agctgctgtt tgcgaggcat caagtgctgt tacaacaatt aatttacagc cctgtgattt
     5821 aatccattcc gcaagctcaa ttcccattgg attgcgtcct gaattagata taaggaagaa
     5881 tatatcattc ggtttcgctt gtaatctatg agtaagcaag gaaccaacac cctcaatcga
     5941 ttcataataa ccgccagctg ggtccataat aacttttgat ggaattagtc ctcctgctct
     6001 cccacatact tcaatagctg ccgcatatga gtgcccacta ccaaatgctt gaataattcc
     6061 gtcgttcatg atgctgtctg ccaccagttt tgctgcttga tgaatacttt ccgcctgtgt
     6121 tttttctagt tcctccgtta attcacgcgc tttgtcaaaa aatgttaaac ccattttgtc
     6181 tattcctcca atttttatat tttaacctag aatttttagg ttgaataaaa taatcgcaat
     6241 aaccattact aataaaatag ccttcgtaga tgtcattttt ttgtggccta aaagtgcata
     6301 gattagcgcc acgagtaaaa ctggaacgag tgatggcatg atttgatcga gcatgtcttg
     6361 cattttgagc tctacttttc ctgatttata aacgaatggg acagttgctt tgattacggt
     6421 tggtattaat gccccgacga ccgtgacccc gagcagaatc gctgcatcgg ttaacgcgtt
     6481 aagcctgtcc gcaaattccg tcactagttt tgcaccttgc ttatatccta gaggaagtaa
     6541 ggtgaatctt gctcccacaa ccaaaatatt aactaatacc cagataacca cacctgtcac
     6601 attaccttga agtcccatat atgcggcaat tgatccaaaa atcgtcggta aaataacccc
     6661 gaaaatcgta tcaccaacac cagcaaatgg tcccatcaaa cccgttttca aaccagttac
     6721 gacttctttt gacgctttct tttcgcgctc ttcaatcgcc atatccattc ctaagatcaa
     6781 accaccaacc ataggattcg tattgaaaaa ttggttatgc atattcatca tatcttttaa
     6841 atcatcgtct gttttataaa gtttccgaag cgttggcaaa atactataaa gataaccagt
     6901 cgacatcatt cgctcatagt tccaacatat ttggctggca aacaaccaac gaaagtttgc
     6961 tgctattaaa tcgcgtctct tgagtacttt ttcaaaatcc tgctcagtct tcgtattcgc
     7021 catcttcatt ctcctcccca actagcgctg cgccatttgc tccggcagcc actggatttt
     7081 tgaaattttg tttaaagtaa atgattgcca aagccacgcc aattagtgcc acgcctagca
     7141 tcggtacttt tagataagct gctgctacaa atccgataat taaataagcg acgaatttgt
     7201 ttgttggtaa gtaacgaagg agaatcgcaa taccaactac cggaagaatt ccaccagcta
     7261 cacgaaggcc gcccattagc cactctggaa tttcatttag aataaaatca accacgcttt
     7321 gtccgaaagt caacatgata aatacgggaa ccgcgcgtga taaagcccat ggtagcgccc
     7381 cataccaaat gttcctttta accgccgaaa tgttgcccga agcaatatta gaatcaatgc
     7441 ggtgcaagaa aaatgtattc gtaaatcttg ctaaaatgtc taattgaacc attaaaagtc
     7501 ccactggaat tgcaagtcca atcgcaaatt ccgcatcctg acctgataaa acggcaaata
     7561 ctgtgccgac gattgctccc gttgtaaagt caggaatcga cgctccgccg tatgtaccaa
     7621 cacctagaac catcagctgt aaagttgccc caatcgcaag tccgagcacc atgtcaccca
     7681 taatgattcc agcaagcgtt cctgttatta cagggaaatt aagtcctatt actaaagtta
     7741 aagcatcaag aatggtacaa gctgcgagta taactaacaa tataatctgc caaactgcta
     7801 aatccattgt agttctccct tcttatcact tattttttta ataaacttgc aaattcaacc
     7861 gcatcttcac tcggaaccat ttgggcagtg attttaatgc ctttttgaga caagtaatcg
     7921 aaatcttcca aattttcatc cgtcacgcta actgattttt tgatttgtcg gctccctgct
     7981 ttagtcgaca tatttccaac attgatttgg ggaagttcta cccccgcatc tactaaaccg
     8041 cgaagagcat gaggtgattt tacgattaag aaaacttgct gccctgcgta tttatcatta
     8101 ttgatattat ttgctgcacc ttttacggtc agaatgctta gtttgacacc agccggtact
     8161 gcggttttta aggcaacttt ttccatttca ttttttacaa ccgcatcgtc aacaatcatg
     8221 attcgcgttg cttttatagt attggtccac attgttgcta cttgcccgtg aattagtctc
     8281 tcatctacgc gtacgtgttt aattccgttg cttcccatca gtcctcttcc tccccatcat
     8341 cacttactat cgtataactc gctttttgct ctacaaattg aatattttct tttgctccaa
     8401 gcatcgcctc ctctaaactt tctccaaggc taagtggaat gagtaatcct agcgacaaac
     8461 ctgatacaac tttaacttct ggatgttttg tactaaacat ttgagccgca ttacatggag
     8521 ttccaccaac aatatcaact atgatagcgg tttcatttac aggtgaataa acggccgtgt
     8581 aggcgtctaa tacatccgtc acccccattt cttcggtaaa agtaattgct gagatattag
     8641 ttgtttggcc agtaatcatc tgacagctat ttttcacttc ctgtgcgtac cggccatgtg
     8701 ctgcgataat aaaattcaag taattaactc ccttctattg ttttttcttt tcaatttcaa
     8761 tagagtaaaa attatgccgc aagtagcttt caatatattc atagggttgc ccctctggca
     8821 cataggttat tctttcaatg tgataaagcg gtaattcgga gtcaatttcg agtaatttaa
     8881 aattattttt gtcttttact ggaaattcga cttcaattcg ctccttcatc gcttcgtgca
     8941 gaatattaat accataaagc tctttaatta cttcagataa agaattaaat ctttcgaaat
     9001 tggttaaatc tacgttgatc aaattggatt ttgccatata gttattttgt acggtccaag
     9061 gcacatcatc aataaggcgg attcgttgaa aatgaacaat catattttca gggggaatct
     9121 gcaatttttt agcaattcgt gcatcctgaa tttcatttat tgcaactact tttgtatgtt
     9181 cgttagtaat ttttgtttta cgattgaatc ttccgttcgg cactgtcgta tattcattaa
     9241 aaataacttc ttcgttaata atagacttac tcacgtatgt gccttttcct tgataacgag
     9301 ctaaaatccc agctcgtact aattcatgta atgctcgaac aactgtcgta ttactaacat
     9361 tgtatttctt tttcagttca tcttccgaat aaattttttc ccctggctta aaagttccgt
     9421 cactaattaa tcgcttgata tcattgataa taatagcgta ctttggttcc gccataacaa
     9481 attcccccta aagcatcccg cgcgttaaca cgttaagttt taggttaatg gtaccatgat
     9541 aattttttga ttgcaaactt gaattagcct gctatcactg aactttaaat taataaccgg
     9601 ttaacacgtt aagttcattt ttatagtacc acggccattt catttatgca agcgttttct
     9661 ttttattttt ccaaaatagg gtatacataa gtaatctgta tcaaaggggg atataatggg
     9721 gaattctttt agtaaatggg ggaaatggat acttgtcctt gggttaatgt tcagcgtttt
     9781 tagtgtttct acagctggtc aggcggcggc aaaagagact gtgattaaca agcaaatggt
     9841 aacaactgca agccttaatg ttcgttcaac taattcgact tctgggaaag ttattggttg
     9901 gcttaagagc aatacaaagt tcaaagcgat tgctaaaaca tcgaataact ggtatcgatt
     9961 tagtttgaaa ggaaaaaatg gctacgtatc tgggaaatac gtcaaggccg caactgccgc
    10021 gccggcacca aaaccttcaa cgccaaaaat tgtgcaaatg aatgtgcctt taatcgttca
    10081 gcgtccacaa ttaccaactg gctgcgagat tacaaacatt gcgatgatgc tgcgctacgc
    10141 tgggaaaaat gtcgataaag tcaaacttgc caaagaaatg aaacgtcata aatccaatcc
    10201 gaattatggt tttgttggaa atccattctc taagagtggc tggacgattt atccaccggc
    10261 tttagttaat caagttaaaa aatatactgg gagcgcgaag aatatgactg gaacaaattt
    10321 agctggtatt aaaaatcagt tgaataaaaa acgtccagtt gtagcttggg ttagtaattt
    10381 ccatggtttt tccgttcatg cgattactat tacaggttat gataaaaata atttttacta
    10441 taacgacagc tggtccggtc aaaaaaatgc acgaatttcg caaagttatt ttaatacttg
    10501 ttggagcaaa caagcaaaac gcgcgatttc atattaaaat aaaatcccca ctttcgatga
    10561 tgaaagtggg gatttctgat atattagtcg atatctttac catttgtttc aattactttt
    10621 ttgtaccagt cgaatgattt tttcttcgag cggtttaggg ttccgttgcc tttattatcg
    10681 cggtcaacgt agatgaagcc gtagcgtttt ttcatttcgc cagagccagc gctgacaagg
    10741 tcgatgcagc cccatggtgt ataaccaaga agttccacgc catcctcaat tgcttcgccc
    10801 atttcgcgaa cgtgttcacg catgtagtcg attctgtaat catcagtgat tgagccgtct
    10861 tctgccacag tatccactgc acctaagcca ttttcaacga tgaaaagagg tttttgataa
    10921 cggtcgtaaa ttgtattcat cgtaatacgt agacctagtg gatcaatttg ccaaccccat
    10981 tcgcttgctt ttaggtatgg gttttttagt gttgcgaaaa cgttgccttc tgtttctttg
    11041 tttttctctg gatctgcgct tgttagacga gaagaatagt agctgaatgc cacgtaatca
    11101 actgtgtgat cgcgtaatac gtctaaatcg ccatcttcca ttttgatgtt gatgttgtgt
    11161 tctttgaaga aacgcttagt gtagcttggg tagtatccgc gtgcttgaac atcaatgaag
    11221 aagtagcctt cacggtccgc ctcgatagac ttccagacat cttttggatt acaagtcatt
    11281 ggatatgtgt tacccgctgc aagcatacaa ccgatttgat tttcaggatt gatttcatga
    11341 ccaagtttag ttgcaagtgc tgatgcaact aattgatgat gagcagcttg atatttaact
    11401 tcctctggat tatcctcttt agtaacgtct aaacctccac caatgtatgg aagatgaaga
    11461 atcatgttaa tttcattaaa tgtcatccaa tattttactt tatctttata acgcgtgaaa
    11521 attgcttcac agaaattcaa gtaaaagtcg atgcatttac gatttttcca accaccatat
    11581 tttttgaaaa cttctagcgg agtatcaaaa tggttgattg taacaactgg ttcgatacca
    11641 tatttgtgac attcatcaaa aactgcatca taaaatgcta aacctttttc atttggtgtc
    11701 gtttcatcac cattcgggaa aatacgtggc caactgatgg acatacggaa acatttgaat
    11761 cccatttcag ccattaattt aatgtcttct ttataacgat gataaaaatc aattgattcg
    11821 tgacttgggt aaaaaccata atctgtagca agcgctttcg atggattgaa taaagcttcc
    11881 caacgtccgt cctctactgt tggaaggata tcaacaagtg aaagtccttt accgtcttca
    11941 agataagctc cttcacattg gttggcagca actgctccgc cccataaaaa gtctttagga
    12001 aattttgatt ctgtcatttt tgtatatctc ctctcacgaa tata
//
LOCUS       DABQVC010000084        11995 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.084,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000084 DABQVC010000000
VERSION     DABQVC010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11995
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.084"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(29..319)
                     /locus_tag="IBJ56_001576"
     CDS             complement(29..319)
                     /locus_tag="IBJ56_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417830.1"
                     /translation="MILYGVVTYDEATEWTTDLLTAKKWVENAKQVFCDGEVDEDYYV
                     KLIKLDVEAFLYDKYDKETDLSDQLHDEAETLKEYHLSLEDDGTYMVKEVAK"
     gene            complement(316..522)
                     /locus_tag="IBJ56_001577"
     CDS             complement(316..522)
                     /locus_tag="IBJ56_001577"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417831.1"
                     /translation="MNEEWFEFVGYSESRAKYVNIDDQLNELSKTHEIIEVHFSTYSS
                     SDWNYLSGGTATALVRARKREVSE"
     gene            complement(693..1196)
                     /locus_tag="IBJ56_001578"
     CDS             complement(693..1196)
                     /locus_tag="IBJ56_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417832.1"
                     /translation="MRDIEYRAFVKKDKKVLPVTDLCFNETESVGVSGCGDANCTLCV
                     DWYSFDDVVLMQYIGRKDEDDKAIAKNDIVQVVLEHFPMGYYQEVEYVGVVKYDTDIC
                     AYYLDLIKPPALSGETIPDEIDGIKITREDPEDFDTRFYFDASVDSAAMTVIGNIHEN
                     PELLEEK"
     gene            complement(1193..1378)
                     /locus_tag="IBJ56_001579"
     CDS             complement(1193..1378)
                     /locus_tag="IBJ56_001579"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417833.1"
                     /translation="MSDIKFKGKRLDNGELVHGYFVMDDCDCAYIITVENDGYSAIPI
                     IKECYEVDAETVSEVEK"
     gene            complement(1375..1554)
                     /locus_tag="IBJ56_001580"
     CDS             complement(1375..1554)
                     /locus_tag="IBJ56_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417834.1"
                     /translation="MTVKVGSTVKTTYKTKLIHKGEIGTVKEIYDVVNIPQVALVDFK
                     HSVICFFVRDLEEQA"
     gene            complement(1551..2156)
                     /locus_tag="IBJ56_001581"
     CDS             complement(1551..2156)
                     /locus_tag="IBJ56_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HAM3417835.1"
                     /translation="MRFREGDKVEFIWSGKLKQGVVTEIEETKNAISYQIKYSGDMGM
                     TWLDERDLVAPAPVLKVPQFADDWIKHCKQSEYDLACLLDYEDSDMSAEMYEWLISSA
                     DNQELLARAWLDGYEVEEEPLYYVRLPLSTWNDDAAELEVINMYVLLNKQSDETTFTG
                     LIINKNKKWTTKLTEAEIKGMPEGDIYWQFAVPVEGAEGEA"
     gene            complement(2183..2377)
                     /locus_tag="IBJ56_001582"
     CDS             complement(2183..2377)
                     /locus_tag="IBJ56_001582"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417836.1"
                     /translation="MKSKTYIATITYRDDGVYKSFTLEVTAKNKLQARTIAYSHALFE
                     ESIGIRSIYSISAFKHKARP"
     gene            complement(2374..3351)
                     /locus_tag="IBJ56_001583"
     CDS             complement(2374..3351)
                     /locus_tag="IBJ56_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HAM3417837.1"
                     /translation="MVQILELFGGIGAPRKALENLGVDIKSLDYVEILPFAVQAYNNI
                     FSNDYVPQDVTKWNMSVDLLIHGSPCQDWSKNGLNNINTGRSILYERTLEIIKSELTP
                     RPKKVVWENVPNLLSDRHRMHFDHYLESMELFGYTNHFKILNARDYGIPQNRERVFVV
                     SVLGNNKEFQFPEKVKPVKSLKDYIDFDVDPTAYALSENEKQLFFREGKQLFIHTNTK
                     IGFQEVEQFDSVNVERPTSKTRRGRVGKQVVQTITTGATQVIYYDNVVRHITAKEYLR
                     LMGYSDIDYFAMRESGISDRQIVKLAGNSIAVPVLEAIFKNLLDLEKEE"
     gene            complement(3369..3623)
                     /locus_tag="IBJ56_001584"
     CDS             complement(3369..3623)
                     /locus_tag="IBJ56_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417838.1"
                     /translation="MKTIANEYKEYITERTRLSDNGLELTAYSFENGYQARVIENLDS
                     NFVSLVLVKSHDGKNSIKDILLELTHEQLIEKLEEVKNYA"
     gene            complement(3620..4534)
                     /locus_tag="IBJ56_001585"
     CDS             complement(3620..4534)
                     /locus_tag="IBJ56_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003733679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HAM3417839.1"
                     /translation="MSHGWVKLHRDLKEKPIWRSSTPEQKTILVTLLMMANHKENEWE
                     WMGKPFKAKPGEFVTSIKSITEECGKGISSQNVRTALKRFENYGFLTKESTKVNTLIN
                     IVNWGVYQDSENKSNTLANKQLTNDSQTANKQLTTNKNVRTKECNKNNNNSDLNFKDF
                     WEQNGFGMMLPIELEKLLAWVDDFAGNREIVMKALEVTSEQGANKRNYAYVNKILKNW
                     ENRGFKTIADVDAAEKQRQIELEQKYNKPTYNKYNKPVKEEVLPDWFDKEQKQTKQEA
                     STTESSEDLEKRVAEIKAQLAARNEVQT"
     gene            complement(4555..5370)
                     /locus_tag="IBJ56_001586"
     CDS             complement(4555..5370)
                     /locus_tag="IBJ56_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HAM3417840.1"
                     /translation="MATNDELKNQLANKQNGGQVASAQSLGLKGLLEAPTMRKKFESV
                     LDKKAPQFLTSLLNLYNGDDYLQKTDPMTVVTSAMVAATLDLPIDKNLGYAWIVPYKG
                     RAQFQLGYKGYIQLALRTGQYKSINVIEVREGELLKWNRLTEEIELDLDNNTSEKVVG
                     YCGYFQLINGFEKTVYWTRKEIEAHKKKFSKSDFGWKKDYDAMAKKTVLRNMLSKWGI
                     LSIDMQTAVTEDEAEPRERKDVTDDESIPDIIEAPITPSDTLEAGSVVQGSMI"
     gene            complement(5373..6332)
                     /locus_tag="IBJ56_001587"
     CDS             complement(5373..6332)
                     /locus_tag="IBJ56_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HAM3417841.1"
                     /translation="MAIAKEKTMNILASVKDMDRTQWLLTRRLGIGGSDAGIIMGLNQ
                     YKTAFELWLDKTDQVLPDESAGEAAYWGNQMEEVVAKEFEKRTGKKVRRSNMMYQHPE
                     HDFMLANVDRFVVGEDAILECKTASAYLAKEWEADEVPATYLVQIQHYLAVTGKSKAY
                     VAVLIGGNKFIWKEIERDDELINQIIAFELDFWETNVKGHVAPALDGSSAAEKYLKDR
                     FAKSEAKQVILSKKYNEFLAERANLERDIKLLETRKKEIDNNIKNDLKEAETGITDDF
                     KITWNPVTTSRVDDKRLKEEHPDIYKKFQKETSYRKFVVKENK"
     gene            complement(6567..6755)
                     /locus_tag="IBJ56_001588"
     CDS             complement(6567..6755)
                     /locus_tag="IBJ56_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417842.1"
                     /translation="MTERVFRKATNFGDSEIHTDSRTKMIANPAFQQKIPLNETGCDS
                     MADYIEELKLKGYEEVTR"
     gene            complement(6771..6956)
                     /locus_tag="IBJ56_001589"
     CDS             complement(6771..6956)
                     /locus_tag="IBJ56_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3417843.1"
                     /translation="METMEKDILTAEEAAEMLGMKKRTIQSWARNAGLPGKKINGKTW
                     IFSKRELEAWVAQGGEK"
     gene            complement(6963..7487)
                     /locus_tag="IBJ56_001590"
     CDS             complement(6963..7487)
                     /locus_tag="IBJ56_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417844.1"
                     /translation="MFQKSTSATAAMQVLAETRTQKELAIDSYVTPALISNQIKGKRT
                     VSLEQAEQLIDSYNEPQSTYLFAHEFSNGMIPPLLNGLDNHHASLTCRFELEVTEAVN
                     ALKSGLETMTFNLRKGDMLQREAAKQAISEITDVIATALTLNTSIAKAFNINLQQILE
                     SRDKFYQKNGLVKE"
     gene            complement(7612..8388)
                     /locus_tag="IBJ56_001591"
     CDS             complement(7612..8388)
                     /locus_tag="IBJ56_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor Ant"
                     /protein_id="HAM3417845.1"
                     /translation="MSNLQVIANEMLPVLENEQGEKFVDARMLHEKLLVNTRFNDWIY
                     RMIGNYGYENGLDFYSTLSKTNGRPSTNYFLTLDTAKELAMVQNNEMGRAIRKYFIEV
                     EKQARKLATEYPTFSYMIEDPVARAKKWIEEQQEKQEALKQLEEQKPKVVFAEAVQTS
                     ENTILVKDLATILKQKGLDIGQNRLFEWLRGSGYLLNKGAYYNKPSQKAMNLGLFEQK
                     THIHTDRNGLMITTYTPRVTGKGQIYLLNKLLEEHNQVII"
     gene            complement(8370..8645)
                     /locus_tag="IBJ56_001592"
     CDS             complement(8370..8645)
                     /locus_tag="IBJ56_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417846.1"
                     /translation="MIFTVNSFPQSGHVFTPGLTVNTCEHSGQLPSVPFLIISCFAIF
                     RLCSLICLSNFFESNLILTPILPTSLHKNYSTVKGRTERRTKCQIYK"
     gene            complement(8651..8932)
                     /locus_tag="IBJ56_001593"
     CDS             complement(8651..8932)
                     /locus_tag="IBJ56_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417847.1"
                     /translation="MNNIKQAIIKLETILENGNAIESGSFVKYSVIKNILSLLEKDQE
                     LKIIEMKVELNGVEDSIENATLLEKRLSEAKSLVEDLASTINSLEIKVK"
     gene            complement(8958..9242)
                     /locus_tag="IBJ56_001594"
     CDS             complement(8958..9242)
                     /locus_tag="IBJ56_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417848.1"
                     /translation="MNIRYLSNKRSEEKESVFKTKIIPPEILKSLNIKMQGDRNCCYG
                     VLEINGKQLRKGITAVKLDLKAGSLPVVQVEYHPFTISEEMQRLIWSGKY"
     gene            complement(9254..9448)
                     /locus_tag="IBJ56_001595"
     CDS             complement(9254..9448)
                     /locus_tag="IBJ56_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003735007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417849.1"
                     /translation="MRKIAFTNSFLTKRNRKESVLTIELSITGEDFSDLSILPELYSE
                     INSLVNRLSEKTNGDLGKRK"
     gene            complement(9481..9684)
                     /locus_tag="IBJ56_001596"
     CDS             complement(9481..9684)
                     /locus_tag="IBJ56_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3417850.1"
                     /translation="MRNRLIELRKSKTRREVSKDLNITPQMLGAIERGDRTPSLKLAN
                     KIANYYDVPIEDIFFDNKDTLCV"
     gene            9853..10329
                     /locus_tag="IBJ56_001597"
     CDS             9853..10329
                     /locus_tag="IBJ56_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3417851.1"
                     /translation="MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQ
                     TLLKIAEFFNVSTDYLLGRDDNNLADTIAAHIDSNATEEDIKEILAYIEEKRKEHANE
                     REINITEIASKEDEAVDKFVEENEDFKAVAARVMNDAEAVKAVKSFIEFYEQQKKD"
     gene            10486..10653
                     /locus_tag="IBJ56_001598"
     CDS             10486..10653
                     /locus_tag="IBJ56_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417852.1"
                     /translation="MKTLDELNVKHDIVILEHEFTSCSFTLKKEIFIVIDSRLSRSEK
                     LEDIARLLNKI"
     gene            10708..11409
                     /locus_tag="IBJ56_001599"
     CDS             10708..11409
                     /locus_tag="IBJ56_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417853.1"
                     /translation="MSKYSYLLKKWWFWILLLLIILSLFNGIWVLLFFATLATLTFAV
                     IKVIKNENRRKYTLIIIVTTVLLLTFSLVRTVQLYNYIVENPEENVTTDDPKKDIKED
                     AETNEVEETEEMNQADASTAYTVTQEGIESFNESINRLISESNGILIKVVPFENEYDM
                     LIAYVTQDLKYQDETIKQKNADYLGNEIQQRALGTLFGGDSNHRPMVELRYEDETKMA
                     GSSAFDKTNMKLTGK"
     gene            11430..>11995
                     /locus_tag="IBJ56_001600"
     CDS             11430..>11995
                     /locus_tag="IBJ56_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417854.1"
                     /translation="MKKGIALLAGFMLAFSIFLTGCGGTDNTRKENHSDGSAEVKNKK
                     DNNTSDEYVEDGLLLKVREWTKDKDYDTKVTLEKIATPKIKVDLGDLNMLIKDVKIFK
                     RENVSDAEKEEFSGGKVPVTDPYYTIQVKYDLENTGKNALNFNGIDYIITDQKQQIDV
                     MTDNIGINGVFTVQPDVIVEDEYVICIL"
BASE COUNT         3375 a         2379 c         1900 g         4341 t
ORIGIN      
        1 atagagtcat tcttacaata ctcacacatt atttcgccac ctctttcacc atgtaagttc
       61 cgtcatcttc taaactcaaa tgatactctt tcaatgtttc agcttcatcg tgtaactgat
      121 cactcaaatc tgtttctttg tcatatttat cgtataagaa tgcttctacg tctaatttta
      181 ttaacttaac ataataatct tcatcaactt ctccatcgca gaaaacttgc ttagcatttt
      241 ctacccattt tttggctgtt agcaaatccg ttgtccactc tgttgcttcg tcatatgtta
      301 ctaccccata taaaatcatt ccgacacctc tctctttctt gctctcacaa gtgcggtagc
      361 ggttcctcca gatagatagt tccaatcaga agaggaatac gtactgaaat ggacttcgat
      421 aatctcgtgt gttttggaaa gctcgtttaa ttggtcgtct atgtttacgt atttcgctcg
      481 tgactcactg tatcccacaa attcaaacca ttcctcgttc attccgccac ctccaataat
      541 tccggattca cttccaaaat agttgattcg tgtacaggcg gatacatcaa atcgccgtcc
      601 acgatcaaat catatttagc ttctccgcac tcgcatgtac cgcaaaaaat gatatgtcgt
      661 gtgtgcttct ctaatgcttc tcttaacgtc atttactttt cctccaatag ttccggattt
      721 tcgtgaatgt tgcctatcac tgtcatagct gctgaatcaa cgctagcatc gaagtagaat
      781 ctggtatcga aatcttcggg atcttctctt gtaattttaa ttccgtcgat ttcatctggt
      841 atcgtttcgc cactaagtgc aggcggctta atcaaatcaa gataatacgc gcatatatcc
      901 gtgtcatatt taaccactcc aacatattcc acttcttggt agtagcccat tggaaagtgt
      961 tctaaaacca cttgcacaat gtcattttta gcaatggctt tgtcgtcttc gtctttccta
     1021 ccgatatact gcatcagcac gacatcatca aagctgtacc agtcgacgca cagcgtgcaa
     1081 tttgcgtctc cgcaaccact tacacctaca gactctgttt cgttaaagca caaatccgtt
     1141 actggaagca ctttcttatc tttttttaca aatgctctat attcaatgtc tctcatttct
     1201 ccacctcgct aacagtttca gcatcaacct cataacattc tttgattatc ggaatagcgc
     1261 tataaccatc attctcaacg gttataatat atgcacaatc acagtcatcc atgacaaagt
     1321 atccgtgtac caattccccg ttatctaggc gctttccttt gaatttaatg tcactcatgc
     1381 ttgttcctcc agatccctaa caaaaaaaca aattaccgaa tgcttaaaat caactaatgc
     1441 cacttgtggg atattaacaa catcataaat ttctttaact gtgccaattt cgcctttatg
     1501 aattagtttt gttttatacg ttgtttttac agtgctacct acttttactg tcatgcttca
     1561 ccctccgctc cctcaacagg aacagcaaac tgccaataaa tatcaccttc aggcatgcct
     1621 ttaatttctg cttctgttaa tttggttgtc catttcttat ttttattgat aattaatcca
     1681 gtaaaagttg tttcatcaga ttgtttattt aacaaaacat acatattaat cacttctaat
     1741 tcggctgcgt catcgttcca tgttgaaagc ggcaatcgca cataataaag cggttcttcc
     1801 tcgacttcgt agccgtcaag ccaagcgcgg gcgagtagtt cttgattatc agctgatgaa
     1861 attaaccatt cgtacatttc agcagacata tcagaatctt catagtctaa caaacaagct
     1921 aaatcgtatt cgctttgttt acagtgtttt atccagtcat cggcaaattg cggcactttt
     1981 aaaactggag caggcgcaac taagtccctt tcatcaagcc aagtcatgcc catatctcca
     2041 ctatatttaa tttgatagga tatagcattt ttagtttctt ctatttcagt tacaacacct
     2101 tgtttcaatt tacctgacca aataaactct actttatcgc cttctctaaa tctcatgctt
     2161 gttcctcctt caaattcaat tgctaaggtc ttgctttatg tttaaatgca ctaattgaat
     2221 atatgcttct aattccaata ctttcttcaa ataaagcgtg gctataagct attgtccttg
     2281 cttgaagttt gttttttgca gtaacttcaa gcgtaaatga tttataaacg ccatcgtcgc
     2341 ggtacgttat agtagctata tacgttttag atttcattct tccttctcca aatccaataa
     2401 attcttaaat atcgcttcta aaaccggcac cgcaatagaa ttccccgcga gtttcactat
     2461 ctgcctgtca gatatacccg actctcgcat tgcaaagtag tcaatatcgc tgtagcccat
     2521 caaacgcaag tactctttcg cggtgatatg tcgaaccaca ttgtcgtaat aaataacttg
     2581 tgttgctcct gtggttattg tttgaacaac ttgcttacct acacgccctc gcctagtttt
     2641 gctcgtcggt ctttctacat tcacagagtc gaattgttct acttcttgaa atcctatttt
     2701 tgtatttgtg tgaatgaata gttgcttacc ttctctgaaa aaaagttgtt tttcgttttc
     2761 ggataaggca taagctgtcg ggtcaacatc aaaatcaata taatctttta agctcttaac
     2821 tggcttaact ttttctggga attgaaattc tttattattt ccgagtacgc tcactacaaa
     2881 tactctttct cggttttgtg gtatgccgta atcgcgagca tttagtatct tgaaatgatt
     2941 agtatatcca aacagttcca tcgattctaa ataatgatca aagtgcattc tgtgtctatc
     3001 agataagaga ttaggaacgt tttcccacac tactttttta ggtctggggg ttaattcgct
     3061 tttaattatc tctagtgttc gctcgtataa aatcgagcgt ccggtattaa tgttgttaag
     3121 accatttttt gaccagtctt ggcaaggcga cccatgaata agtaaatcta cactcatgtt
     3181 ccactttgtc acatcttgcg gcacataatc atttgaaaag atgttgttgt aagcttgaac
     3241 agcgaagggc aatatttcta catagtcgag gcttttaata tccaccccta aattttcaag
     3301 tgcttttcgt ggagcgccaa ttcccccaaa aagttcaaga atttgaacca tccatttagc
     3361 ctccgttctc acgcataatt cttaacctct tctagctttt caatcagttg ttcgtgtgtt
     3421 aattcaagca aaatatcttt tatagagttt tttccgtcat gagactttac aagtacgagt
     3481 gatacaaaat tagagtcaag attttctatc actctcgctt gatagccatt ttcaaaacta
     3541 taagcagtta gttctaagcc gttatcactt aatcttgttc tttctgtgat gtattcttta
     3601 tactcatttg cgattgtttt cacgtctgca cctcattcct agccgctaac tgcgctttaa
     3661 tttcagcgac tctcttttct aagtcttcgc ttgattctgt tgttgaagct tcttgttttg
     3721 tttgtttctg ctctttgtcg aaccagtccg gcaatacttc ttctttaact ggtttgttat
     3781 atttgttgta agtgggcttg ttatattttt gctctagctc tatctgtcgt tgtttttccg
     3841 ctgcatcaac atcagctatt gttttaaatc ctctgttttc ccagttttta agaattttat
     3901 taacgtaagc gtaattacgt ttgttagctc cttgctctga tgtaacttct aaagccttca
     3961 tgacaatttc tcgattacct gcaaaatcat ctacccaagc aagtagtttt tcgagttcga
     4021 ttggaagcat cattccgaat ccgttttgtt cccaaaaatc tttgaaattt aaatcgctgt
     4081 tgttgttgtt tttattacat tctttagttc ttacattctt gttagttgtt agctgtttgt
     4141 tagctgtttg tgagtcgttt gttagctgtt tgttagcaag tgtgttagat ttattttccg
     4201 agtcttgata aacgccccag ttcactatgt ttataagggt gtttaccttt gttgattcct
     4261 ttgttagaaa tccgtaattt tcaaatcttt ttagagctgt cctgacattt tgcgaagaga
     4321 tacctttgcc gcattcctcc gtaattgact taatacttgt gacgaattca cctggttttg
     4381 ctttgaaagg tttccccatc cactcccact cgttttcctt gtgatttgcc atcattaaca
     4441 aagtcacaag gatggttttt tgctcgggtg tagagcttct ccatataggc ttttctttca
     4501 aatctctatg caatttaacc cacccatgtg acatgcttct tttctccttt caaattagat
     4561 cattgaccct tgaactaccg agccagcttc taacgtgtca gacggcgtta taggcgcctc
     4621 tataatgtcc ggtattgatt catcgtctgt aacgtctttt cgttctctag gctctgcttc
     4681 gtcctctgta accgctgttt gcatgtcgat ggataagatg ccccatttac ttaacatgtt
     4741 tctaagaaca gtctttttag ccattgcatc gtaatctttt ttccatccaa agtctgattt
     4801 actaaatttc tttttatgtg cttcaatttc tttgcgagtc caatagaccg ttttttcaaa
     4861 gccatttatc aactgaaaat aaccacagta accaacgact ttttcacttg tattgttgtc
     4921 taaatctagt tcgatttctt cagtaagtcg attccatttt agtaactcgc cttctcgcac
     4981 ttcgataaca ttaatacttt tatattgtcc tgtgcgtagt gctaactgga tgtatccttt
     5041 ataaccaagc tgaaactgtg ctctgccttt gtaaggaaca atccacgcat aacctaaatt
     5101 tttgtcaatc ggtaaatcta gtgttgccgc taccatggca gaagtaacaa ccgtcattgg
     5161 gtctgttttt tgtaaatagt cgtcgccatt gtaaaggttt aaaagggaag ttaaaaattg
     5221 aggtgctttt ttatctagta cactttcgaa tttcttgcgc attgtaggtg cttctagcaa
     5281 tccttttaaa cctaatgatt gtgcgcttgc tacttgtccc ccattttgtt tgtttgctaa
     5341 ttgatttttt aattcatcgt tagttgccat aattatttat tctccttcac cacaaatttt
     5401 ctataactag tttctttctg gaattttttg taaatatctg gatgttcttc ttttaaacgt
     5461 ttatcatcta ctcttgaagt cgtaacagga ttccaagtaa tcttaaaatc atctgtgatg
     5521 cccgtttcag cttcttttaa atcattcttg atattattat caatttcttt ctttcgtgtc
     5581 tctaaaagct ttatatcgcg ttctaaattt gctctttcag ccaaaaattc gttatatttt
     5641 tttgataaaa taacttgttt agcttctgac ttagcaaaac gatcttttaa atatttttct
     5701 gcggcacttg aaccgtctag cgccggcgct acatgtcctt ttacgttcgt ttcccaaaaa
     5761 tctaactcaa aagcaattat ttgattgatt aactcgtcat cgcgttcaat ttctttccaa
     5821 ataaatttat ttcctccaat tagaacagct acataggctt tgcttttacc tgtgaccgct
     5881 aaatagtgtt gtatttgcac tagataagtc gctggtactt cgtcagcttc ccattccttt
     5941 gctaagtatg ctgatgctgt tttacattcc aaaatagcgt cttcaccaac cacaaaccta
     6001 tcaacgtttg ccaacataaa atcatgctct ggatgttgat acatcatgtt gctacgtctt
     6061 actttcttgc cagttcgctt ttcgaattct tttgcgacaa cttcttccat ttgattgccc
     6121 cagtatgcgg cttctcccgc tgattcatct ggcaaaactt ggtctgtttt atctagccac
     6181 agctcaaatg ctgttttgta ctgatttaac cccatgatga ttcccgcatc gcttccgcca
     6241 atgcctaaac gtcgagttag caaccattgt gttctatcca tgtctttcac gcttgctaaa
     6301 atgttcattg tcttttcttt tgcaatagcc atatatgtta cctccattga ttttttaatg
     6361 gacctgaggt ataattttgt taaggtaata tctcaaatct cggacctgcg ctgctacgcg
     6421 ggtctttttt aatgcctaaa accatcgtcc caaagatcat caacaaccat cggattttca
     6481 accatgtttt ttatcacttc ctctcagcca gtagcctgca attagcgaca taaacgacac
     6541 gaaaatcatt accataaata catccattat cttgtgacct cctcgtatcc ctttagtttc
     6601 agctcttcga tatagtccgc catgctgtcg caacctgttt catttaaagg gattttctgc
     6661 tgaaatgccg gattagcaat catttttgtt ctgctatctg tatgaatttc actatcaccg
     6721 aagtttgtcg cctttctgaa aactctttct gtcattgctg taaccctcct ttatttttct
     6781 ccgccttgag ctacccatgc ttcaagttct cttttgctaa aaatccatgt cttgccattt
     6841 atttttttgc cgggtaatcc cgcatttcta gcccaagact gaatagtcct ctttttcatt
     6901 cctaacatct ccgccgcttc ttcagctgtt aaaatatcct tttccatcgt ttccattgtt
     6961 tctcactcct tcaccaaacc atttttttga tagaatttat ctcgactttc taaaatttgt
     7021 tgtaaattaa tgttgaatgc cttcgctata cttgtgttaa gcgttaatgc tgttgcgatt
     7081 acatctgtta tttctgaaat tgcttgtttt gcggcttctc gttgtagcat gtcacctttt
     7141 cttaaattga atgtcatcgt ttctaatccg ctttttaacg cgtttactgc ctctgttact
     7201 tctagttcaa agcgacaagt taaagatgcg tgatggttgt ccagcccgtt cagtagaggc
     7261 ggaatcattc cattgctaaa ttcatgtgcg aataagtaag tactctgtgg ctcgttgtag
     7321 ctatcaatta actgttctgc ttgttcaagt gaaactgttc tctttccttt tatctggtta
     7381 cttattagtg ctggcgttac ataactatca atcgctagtt ctttttgcgt gcgagtttct
     7441 gctaaaactt gcatcgcagc tgttgctgat gttgattttt gaaacataat atctcaatcc
     7501 tttttttgtt attttttcag cgactaatta acaacttatc gttatatact attgttagtc
     7561 gctccccggt gactaagttg tctgcataag cgtcgttgtg gtaggcgacg cttaaattat
     7621 gacttgattg tgttcttcta ataatttgtt taataggtat atttgacctt tgccagtaac
     7681 tcgaggtgta taggtagtta tcattaagcc gtttctatct gtatgaatat gtgttttttg
     7741 ttcaaacaat cctaaattca tcgccttttg cgatggttta ttataataag cccctttatt
     7801 tagcaaatat ccgctacctc tcaaccattc aaaaagtctg ttttgtccta tatctaatcc
     7861 tttttgtttt agaatagtag ctaaatcttt tactaaaatt gtgttctcgc tcgtttgtac
     7921 agcttccgca aaaactactt tcggcttttg ttcctcaagt tgctttaaag cctcttgctt
     7981 ctcttgttgt tcctcaatcc attttttagc tctagcgact ggatcttcta tcatgtatga
     8041 aaaagttgga tattcagttg ctaatttcct cgcttgtttt tctacttcaa tgaagtattt
     8101 tctaattgct cgacccattt cgttgttttg caccattgct aattctttag cagtatctaa
     8161 agtcaaaaaa taatttgttg atggtcgccc attggtttta ctcaaagttg agtaaaagtc
     8221 taaaccattc tcataaccat aatttccaat cattctatat atccaatcat taaatcttgt
     8281 atttactaaa agcttttcat gaagcatccg ggcatcaaca aatttttcgc cttgttcatt
     8341 ttctaaaact ggcaacattt catttgcaat tacttgtaaa tttgacattt tgttctcctt
     8401 tctgttcgcc ctttcacagt gctatagttt ttgtgaaggg aggtgggtaa aatgggagtt
     8461 aaaattaaat ttgattcaaa aaaattagag agacaaatta aagaacaaag cctaaaaatc
     8521 gcaaagcaag atattattaa aaatggaacg gaagggagct gtcccgaatg ttcgcatgta
     8581 tttacagtta aacctggagt aaacacatgt cccgattgcg ggaatgaatt tactgtaaaa
     8641 atcaagtaaa tcacttcacc ttaatttcta acgagtttat agtgctagcc aagtcttcca
     8701 ccaaagattt ggcttcactt aatctctttt ctaacaaagt ggcgttttct atggaatcct
     8761 ctactccatt cagctctact ttcatttcga taatttttag ctcttgatct ttttcaagta
     8821 aacttaaaat attttttata acgctgtatt taacgaatga gccgctctct atcgcattac
     8881 cattttctaa aattgtttct agtttaataa ttgcttgttt gatgttattc atttttcttc
     8941 ctcctaaatt atgattttta gtattttcca gaccatatta gtctttgcat ttcttcgctg
     9001 atcgtgaatg ggtgatattc cacttgtaca actggtaatg atcctgcttt taaatctaac
     9061 ttgaccgctg taattccttt tcttaattgt tttccattga tttctaatac tccataacag
     9121 cagtttctat ctccttgcat tttaatattt aacgatttca agatttctgg aggtatgatt
     9181 ttggttttaa aaactgattc tttctcttca cttcttttat tactcaaata tcttatgttc
     9241 attttctagc ctcctatttt cttttgccca aatcgccgtt agttttttcc gataatctat
     9301 taactaatga attaatttct gaataaagtt ccggcaaaat acttaaatca ctaaaatctt
     9361 ctccggttat acttaattca atggtgagta ctgactcttt tctatttctc ttagttagga
     9421 aagagtttgt aaatgcaatt ttcctcattt tctaacctcc tgttttgttt tccgtccaat
     9481 tcagacacac aacgtgtctt tattatcaaa aaaaatatct tcaattggca catcataata
     9541 gtttgcgatt ttgttagcta gttttaacga gggagtccgg tctcctctct caattgcccc
     9601 taacatttga ggtgttatat ttaaatcttt cgatacctcc cgtcttgttt ttgatttcct
     9661 tagctcaata agcctgtttc tcattttttc acccccaaaa gaaacgtttt gtttctctat
     9721 aaatgcacta tatcagaaac aatatgtttc tgtcaagttt ttcagaaact ttttgtttcc
     9781 aaattgaaga attaatggac tggaaactaa ttgtttctta taatatacat atagaaagcg
     9841 taggtgttag aaatgtttag taaaagatta tctgagttgc gaaagaaaaa aggtttttca
     9901 caatacaaat tagcggacga acttggattt tctagaggtc aagtagctaa ttatgaacaa
     9961 ggaacaagag agcctgacta tcaaacatta ctgaaaatag ctgaattttt taatgtatct
    10021 actgattatt tattaggaag agacgataat aatctcgctg acacaatcgc agcacacatt
    10081 gattcaaacg caacagaaga agatataaaa gagatactcg cttatataga agaaaaaaga
    10141 aaagagcatg caaatgaaag agaaattaat attacggaaa tagcttcaaa agaagatgaa
    10201 gcagttgata aatttgttga agagaacgaa gattttaaag ctgttgcagc tcgagtaatg
    10261 aatgatgcgg aagcagtcaa agcagttaag tcattcattg aattttatga gcaacagaaa
    10321 aaagattaaa gcataattta tttacttact tgactcttga cttgtaattt atttactcgt
    10381 tatcgctatt gattattaac tttctgtgaa aacgtgatat ttcttataaa aattatgtat
    10441 aatataagtg caacgttgca ataaaaaaca acggggtata aatacatgaa aactttagat
    10501 gaactgaacg taaaacatga tatagtgata ctagaacacg aatttacttc ttgttcattc
    10561 actttaaaaa aagaaatttt catagttatt gatagtagat taagtcgaag cgaaaaattg
    10621 gaagacatcg caaggctttt gaataaaata taactatgta accagttcgc ggccgcgggt
    10681 tggtacatat aaaagggaga aagcgggatg agcaagtata gttacctact aaaaaaatgg
    10741 tggttttgga ttcttttatt attaattata ttaagtttgt ttaatggtat atgggttctt
    10801 ttatttttcg ctactctagc gactttgaca tttgctgtaa taaaagttat taaaaatgaa
    10861 aatcgccgaa aatatacgtt aatcattata gtaactacag ttttacttct tactttttct
    10921 ttagtaagaa ccgttcagct ttataattat attgtggaga atccagaaga aaatgtaaca
    10981 acagatgacc caaaaaagga tattaaagaa gatgccgaaa caaatgaagt agaagaaaca
    11041 gaagaaatga atcaagcaga cgcttctacg gcatatacag tcactcaaga aggtatagag
    11101 tcttttaacg agtctattaa tcgattaatt tctgaatcaa acggaatact aataaaagtg
    11161 gttccattcg aaaatgaata tgatatgtta attgcatatg taactcaaga cttaaaatat
    11221 caagatgaaa caatcaaaca aaaaaatgct gattatttag ggaatgaaat acaacaacgc
    11281 gctcttggta ctctttttgg gggagatagc aatcataggc ccatggttga gctaagatat
    11341 gaagacgaga caaagatggc tggaagtagt gcttttgata aaactaatat gaagctcaca
    11401 ggaaaataaa atataaaggg agaatgaata tgaaaaaagg gatagcttta ttagcgggat
    11461 ttatgttagc ttttagtatt tttttaacag gatgtggcgg aacagataat acaagaaaag
    11521 aaaatcattc tgatggcagt gccgaagtga aaaataaaaa agataataat acatcagatg
    11581 aatatgtaga agatggtctt ttattgaaag tgagagaatg gactaaagat aaagattacg
    11641 atactaaagt gactcttgaa aagattgcaa ctccaaaaat aaaagtagat ttaggcgact
    11701 taaatatgtt aattaaggat gtaaaaatct ttaaacgaga gaatgtcagt gacgcagaaa
    11761 aagaggaatt tagcggtgga aaagtccctg tcacagatcc ttactacaca atacaagtta
    11821 aatatgattt agaaaacact ggaaaaaatg cgctaaattt taatggaatt gattatatca
    11881 tcacagacca aaaacaacaa attgatgtta tgactgacaa cattggtata aatggtgtct
    11941 tcactgtaca accagatgtc atagttgaag atgaatatgt tatttgtata ttaaa
//
LOCUS       DABQVC010000085        11763 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.085,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000085 DABQVC010000000
VERSION     DABQVC010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11763
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.085"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..498)
                     /locus_tag="IBJ56_001601"
     CDS             complement(<1..498)
                     /locus_tag="IBJ56_001601"
                     /EC_number="3.5.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463571.1"
                     /note="catalyzes the formation of carbamoylputrescine from
                     agmatine in the arginine decarboxylase pathway of
                     putrescine biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase"
                     /protein_id="HAM3417855.1"
                     /translation="MRTIDSSSKKDGFRMPGEFEKHAGCYIIWPERPDNWRLGAKPAQ
                     KAFVDVATAISRFEPVTVVASSSQYVNARYMLPDEIRVVEMDNDDAWVRDSGPTFVVN
                     DSGDVRGVDWSFNSWGGLVDGLYFPWDKDDQVAQKICELERKDRYRLADFVLEGGSIH
                     VDGEGT"
     gene            complement(485..1870)
                     /locus_tag="IBJ56_001602"
     CDS             complement(485..1870)
                     /locus_tag="IBJ56_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HAM3417856.1"
                     /translation="MEKKKKFRLFDAVLMAVCVVLVVESAAPAAAIGSSQFFWWIALL
                     ILFFLPYGLVSAELGTTYDDEGGIYDWVKRAFGRKWGARVAWLYWINYPIWMASLAVL
                     FVEVITQIFPVSFGTPVSILIQLIFVWIVVIISCYPVSDSKWILNIAAFCKVAIMLCL
                     GVLGIYFAMTKGLANDFSGKALLPTFDLESLSFISVILFNFLGFEVVTTLASDMENPK
                     KQIPQAIIYGGVLIAFFYLLAAFGMGAAIPTSELSTSGGLIDSFIMLIGGVNPFVIII
                     GIMFMYTLVANLVSWALGVNYVAMYAAKNKDLPAVFGKTNPKNDMPTGTSILNGIVAS
                     VLIVAAPLIPNENIFWAFFALNVVALLGSYILMFPAFLKLRKVDPDRERPFKVPGGKI
                     LLYLMTFVPMILLIITLIFSAVPLNGSSAELNEKIPILIGTVVAVIVGEICIWLAGKR
                     KDKGEIGNEND"
     gene            complement(1943..2968)
                     /locus_tag="IBJ56_001603"
     CDS             complement(1943..2968)
                     /locus_tag="IBJ56_001603"
                     /EC_number="2.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine carbamoyltransferase"
                     /protein_id="HAM3417857.1"
                     /translation="MNKKRDFIDTKDFSKEEILFMIEIGRKMKESIKNGHYPQLLKHK
                     TLGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESVGDTAKVLSRLVDIL
                     MARVERHQTVVELANTAAIPVINGMSDYNHPTQELGDAITMFEHLPKGKKIEDCKIVF
                     VGDATQVCASTMFMATKLGMDFVQFGPKGFQLREEHLKIAEENCKVSGGSYLITEDVD
                     IALKDADFIYTDVWYGLYEAELSEEERMKTFYPKYQVNKELISKAAPHVKFMHCLPAT
                     RGEEVTDEVLDAPYSVVIDEAENRLTAMRALLVYFMNPYVREAGFAVAEKYDAELELL
                     LRNGAGL"
     gene            complement(3203..4288)
                     /locus_tag="IBJ56_001604"
     CDS             complement(3203..4288)
                     /locus_tag="IBJ56_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HAM3417858.1"
                     /translation="MKPTMMTYINEEEEMCRVILADFQTNAEKLESLVKNGAKEWLIL
                     ATGSSLNAAQSAKYYIENLADVRITIEEPFNHLYYEKLSSHLDLVIGISQSGQSTSTI
                     SALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLML
                     TGLHFAYKTVQIDETRFNNEISAFSRAIDAIPATIAETEAFYERWQEEFATAPKFTAI
                     GYGPTVGTCKEFETKFSETVRVPSQGLDLEAFMHGPYLEVNPQHRIFFLETASAVTER
                     LVLLRDYESKYTPFTYTVKFGKGEDDRTLVIPTDLDEYQAPFLMILPFQILAHHIAEL
                     KGNKLTERIYTDFGVAMKSKTKPGDYA"
     gene            complement(4290..5648)
                     /locus_tag="IBJ56_001605"
     CDS             complement(4290..5648)
                     /locus_tag="IBJ56_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3417859.1"
                     /translation="MSSERSLSSRFIEGLSIFAQKISSQKHIMAIRDGFAAMIPITII
                     AAFFLLVNNVLLQPENGLLKFIPNVENYLGVGIQVYNATLGIMAILAAFLIGNFLAKS
                     YGMEGRTEGVIAVAAYVVLIPASSHLMSVDGKAFEAGGVLTQEMTSSTGMFLAIIAAL
                     VSVTMLAKFSKSKKLKISMPESVPPAIAKSFNILIPSFLVLSILAIIEVLVVSFVSMS
                     IPEIIVKVLQIPLVGGFQTLPGILLYVFLAGFLWVFGIHGAFVLGAISGPVLLTSLQQ
                     NIDAVNAGTALPNIVTQPFLDAFVYMGGGGTIICLVIAIFIASKRPDHRMVTKFGLIP
                     SIFNVSEPLMFGLPVVFNPIYGIPLVIAPLASTAMAYFATSWGWISQTYILIPWVTPP
                     VLSGYLATGGDIRASILQIAIIIVGTLIYLPFVLVANRAYVLEQKAAGKVEAETVTNG
                     EV"
     gene            complement(5661..8063)
                     /locus_tag="IBJ56_001606"
     CDS             complement(5661..8063)
                     /locus_tag="IBJ56_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoglucanase"
                     /protein_id="HAM3417860.1"
                     /translation="MKPSMKRQIAQTGIIHRPLPIETKHALETLAKKKQVLSSRTLFS
                     SKQHVSLEFAHQGAGDFTISDQDEIKLSSPVVMPHWPAGAPDDGDYTNFGNVTISAPI
                     ENEDWSGFNRVRIQVFPDFPGVTNPYLMISFKNDGSVKVPDIYGREGVHGVNLINHEW
                     NDVIFEIEGLPRDRMTEMSFSYYLNGPERLTAGTMELFINEIKLEQISEPEISKGWIP
                     QDNTLVYSHNGYSKGMPKVAFCANKFVATSFTIHDKETDKVVFTGKSYQNATETGDFI
                     ILDFSDLQTVGEYYLKFADMQTEIFQIGTSEVIWESSIWKSLNFIFCERCGCPVFGKH
                     TTCHADIIAEHDGKQLSFNGGWHDAGDVSQQLIQTAEVTMALYEMASSLPEKEEMLRM
                     RLLEEGEWGLDFILKTRFGDGFRATSAGMTRWTDGLVGGMDDAIARVHNQAYENFYCA
                     GIEAYIGSQIADNATMQNHLLRIAEEDLLFAIKELEKHGTSQKPIFWEHTYQTSESLY
                     YATASWAASMVYQLTNKEIYAEKAAEWLDLMLEAQEKAGIRDSETSELYKGFFYRDKT
                     HKVIQHFNHQAREHLYLLALEAALETQPSNAEKQTWLQAVEMYGDYLKKVTRFTKPYP
                     LIPAGLYKKDEYLDEASFHLQHLLIDERAIEEYQLQFEQGIQINDEIALRKFPIWFSF
                     RGNNAILLSAGKAASIAGKILKDKSLLDIAEGQLQWVIGMNPFGQSMMHGEGYRYAQQ
                     YSVLNGEITGEIPVGMETFRNEDEPYWPEFNNATYKEVWVGNAGKWMSIVADLNKITG
                     KS"
     gene            complement(8060..9025)
                     /locus_tag="IBJ56_001607"
     CDS             complement(8060..9025)
                     /locus_tag="IBJ56_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAM3417861.1"
                     /translation="MDIQESVIGIDLGGTKILIGEVTKDGEVLNSKSYPSNTENQTKA
                     TETLLKVLDDYTQNIGFIAPKQTGIGVGLVGRVNHKSGVWLEIEPGKSNPTPLADILE
                     AKTGLPVSLGNDVVCATMAEKQFGWGQETNDFIYLNVGTGLAAGFVVDGRIIQGGHFN
                     AGEIGHAVVDIHSDVLCGCGRRGCVERLASGLGIKEEALRRLNNYPTSILAEAETELT
                     GKMVLHAAEQKDELAEEIIDNATFQLANLIMNLVRTTDPECVILGGGVTQNEHFFQKI
                     LGNLQSNTIRFVTKGVVRSKLEKDKVGLIGAAVIGMRLGNEGGKE"
     gene            9227..10282
                     /locus_tag="IBJ56_001608"
     CDS             9227..10282
                     /locus_tag="IBJ56_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HAM3417862.1"
                     /translation="MKKITIQEIAKLSGVSVSTVSRVLNNSPSVSAAKRKKIQAIIDE
                     HNYTPSVFARGMVNKQTKNIGVILPDISNPYFISLITQIQKFALDYMFSTILFNTMLA
                     EPNNKNNQHPLTEEDYLKIILEKQVDGLLILGGEIDKEIVPKEYITALNQLNNEIPVV
                     VIGSKIPELNCLFIERNLKKGVTTLVSHLTALGHKNIGFIGGESGVKITTYRLESFKE
                     AMTSYQHPVNDDWVVLSDYYTADGYAAMTQLLENSATLPTALVAINDNVAIGAIRAIN
                     DAKLSCPEDIAIVSCDQFMNGDYQTPRLTSMDQHNEYLGKMAILQLISAINGQVEPMI
                     INHNPELIIRESCGSKL"
     gene            10299..11108
                     /locus_tag="IBJ56_001609"
     CDS             10299..11108
                     /locus_tag="IBJ56_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3417863.1"
                     /translation="MEKYLICSDLDGTLLLKNQTISPKTLNLLQQLIEEGHHFAVSTG
                     RMYNSATDFANLVHPKADVIASNGGVVAVSGEIILQEKMKQSALLETFLLCQNHDLPV
                     FFFSTDTVYYTKNPPYYFTDEEDKGRVNATKLVPIKTKESFLEHADQFINGIVIEEED
                     FDKLAALRSELEKLSDVSILSSHANNIEILPKDMDKKYAVKNLAAHLNIKPENVITFG
                     DGENDIGMLEVAGAGVAMENASELVKKSADFVTTANDADGIYYFLKKYLNR"
     gene            complement(11145..11483)
                     /locus_tag="IBJ56_001610"
     CDS             complement(11145..11483)
                     /locus_tag="IBJ56_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HAM3417864.1"
                     /translation="MKVEGLLGFLGAALGIGFSLMVLVIPDISQALEEESFFFYMLTI
                     GSLVLSGVGLAGSFIVSHKPRLGGAMMVAAAIGCTMSISIMFLLPIVLLAVGGLIALI
                     NYEEAASVEE"
BASE COUNT         3589 a         2579 c         1987 g         3608 t
ORIGIN      
        1 cgtgccttca ccatcgacat gaatggaacc tccttctaac acaaaatcag ctaagcgata
       61 acgatctttt cgctctaatt cgcatatttt ttgagcgact tgatcatctt tatcccacgg
      121 gaagtacaaa ccatcgacca atccacccca agagttaaat gaccaatcca caccacgtac
      181 gtcaccagaa tcattgacca caaaagttgg tccagaatcg cgcacccaag catcgtcgtt
      241 atccatttcc actacgcgaa tttcatcagg caacatatat ctcgcattta catattgact
      301 tgaacttgca acaactgtaa ctggttcaaa acgggaaatc gctgtcgcca catcaacaaa
      361 agctttttgc gcaggtttgg ctcctaagcg ccaattatct ggtcgttctg gccaaataat
      421 atagcaacca gcgtgttttt caaattcccc aggcattcta aatccatctt ttttagaaga
      481 actatcaatc gttctcattt cctatctctc ctttgtcttt tcttttccca gcaagccaaa
      541 tacatatttc accaacaatc accgctacaa cggttccaat taagattggg attttttcat
      601 ttaattctgc acttgaacca tttaatggta ctgcagagaa aatcaaagta ataatgagta
      661 aaatcattgg tacgaaagtc attaagtaaa gcaagatttt gccacctggc actttaaatg
      721 gacgttctcg gtccggatcc accttacgta atttcaaaaa tgctggaaac attaggatat
      781 atgaacctag taaagcaact acatttaatg caaagaatgc ccagaaaata ttttcatttg
      841 gaataagtgg tgccgcaacg attaatacag aagctacaat cccatttaaa atactagtac
      901 ccgttggcat atcatttttc ggatttgttt ttccaaaaac agctggtaaa tctttgtttt
      961 tcgctgcata cattgctaca taattcacgc ctagtgccca agagactaaa tttgctacta
     1021 atgtatacat aaacataatc ccaataataa taacaaatgg gttaactccg ccaatcagca
     1081 taataaagct atcaataaga ccaccggatg ttgaaagttc agaagtcgga attgctgccc
     1141 ccattccgaa agctgctagt aaatagaaga atgcaatcaa aaccccacca taaatgattg
     1201 cttgaggaat ttgtttttta ggattttcca tgtcactcgc aagcgttgtt accacttcaa
     1261 aacctaagaa attaaataaa atgactgaaa taaatgacaa actctctaaa tcaaaagttg
     1321 gaagtaatgc ttttccagag aaatcattcg ccaatccctt cgtcatcgca aaataaattc
     1381 caagtacacc aaggcaaagc ataattgcca ctttacagaa agctgcgata ttaagaatcc
     1441 atttgctatc actcactgga taacaactaa taataacaac aatccacaca aaaatgagct
     1501 gaatcaaaat cgaaaccggc gtcccaaatg aaaccgggaa aatttgcgta ataacttcta
     1561 caaacaatac cgctaaactc gccatccaaa tcggataatt aatccagtat aaccaagcga
     1621 cacgcgcacc ccattttcgg ccaaatgccc gttttaccca atcatagatt ccgccttcat
     1681 catcataggt tgtcccaagt tctgccgaaa caagtccata tggtaagaaa aataaaataa
     1741 gtaacgcaat ccaccagaaa aattgagatg atcctatcgc cgctgctggc gcggcagatt
     1801 ccacaactaa aacgacacat acagccataa gaaccgcatc aaataatctg aatttcttct
     1861 ttttttccaa aatgcccact cctcttttta agtgggggga agaaaacggc cagcgctctc
     1921 ttctcctcct tattttggta tcttataagc cagcgccatt tctaagtaat aactctagtt
     1981 ctgcatcata tttttccgca actgcaaaac ccgcttctct cacatacgga ttcataaagt
     2041 atacaagcag tgctctcatc gctgttaaac gattttcagc ttcgtcaata acaactgagt
     2101 atggagcatc aagcacttcg tccgtaacct cttccccacg agttgcgggt aaacagtgca
     2161 taaacttcac atgtggagcc gctttactga tcaattcttt attcacttga tatttaggat
     2221 aaaaagtttt cattcgctct tcttcggaaa gttccgcttc gtataggcca taccaaacat
     2281 ctgtataaat gaaatctgcg tcttttaacg caatgtccac atcttctgta attaaatagc
     2341 tcccgccaga tactttgcaa ttttcttcag cgattttcaa atgttcttca cgtaattgaa
     2401 atccttttgg tccaaattga acgaaatcca ttccaagttt tgttgccata aacattgtag
     2461 atgcacatac ttgagtagca tctcctacaa agacaatttt gcagtcttca atcttttttc
     2521 cttttggaag gtgttcgaac atagtaattg catcacctaa ttcttgtgta ggatggttgt
     2581 aatcactcat cccattaata accggaatag cagctgtgtt tgcaagttct actaccgttt
     2641 gatgacgttc aacacgcgcc atcaaaatat ctacaagcct agaaagaact ttggctgtat
     2701 cgcctactga ttcatgtccg ccgagctgaa tttgtccagg agctaaatat tgcgcatgac
     2761 caccaagctg tgtcattgct gtttcaaaag atacacgagt tcttgttgat gattgttcaa
     2821 aaatcatccc aagcgtctta tgttttaaaa gttgtgggta atgaccgttt ttaatagatt
     2881 ctttcatttt gcgaccgatt tctatcataa atagtatttc ttctttagaa aaatctttag
     2941 tgtcgataaa atctcttttt ttgttcattt ctatcacctc aaccatttat tttctaaacc
     3001 ttttctgggg catactcgag tatttccttg ccacatgctc atcatagtac aaaagagatt
     3061 gtttttgaat acgttttctt tttttaagaa cagacggaat caccctgtaa ctcgttacat
     3121 tctgcgtaac atgtgaccca aatacaaaaa gaagactgga aaaaccctcc ttataaggat
     3181 ttttccagtc tattagcctc tcttatgcat agtcacctgg ttttgtttta ctcttcatcg
     3241 ctacgccaaa gtctgtgtag atacgttctg ttaatttatt gcctttcaac tccgcaatat
     3301 gatgcgctaa aatttggaaa ggaagaatca ttaggaaagg cgcttggtat tcatctaaat
     3361 ctgttggtat aactagcgtt cggtcatctt cacctttacc aaatttaact gtatacgtaa
     3421 acggggtgta tttagattca taatcccgta acaatactaa tcgctcggta actgcactcg
     3481 ccgtctccaa gaagaagatt ctatgttgtg gatttacttc taaatacggc ccatgcataa
     3541 acgcttctaa atcaagacct tgtgatggca cgcggacagt ttctgagaat tttgtttcaa
     3601 attctttgca tgttccaaca gtaggaccat atccaattgc tgtgaatttc ggtgcagtag
     3661 cgaattcctc ttgccatctt tcataaaatg cttctgtttc ggcaattgtt gctggaattg
     3721 catcgattgc tcggctaaat gcactgattt cattattgaa cctagtttca tcaatttgta
     3781 ctgttttgta tgcaaaatga agtcctgtca gcattaatgt tagaactgtt gctgtaaaac
     3841 cttttgttac gtagccaact cgttcttttc cggagccaat atcaagcgta atatccgcaa
     3901 attcagcaat ttcactcgtt acatcactag ttagagcgac tactggaacg gaagcttctt
     3961 ttttcactcg ttctagcgca gaaatggtcg acgtgctttg accgctttgc gaaatcccga
     4021 taaccaaatc tagatggctt gataattttt cataatataa atggttgaag ggttcttcaa
     4081 tcgtaatgcg gacatcggct agattttcaa tgtaatattt ggcgctttga gctgcattta
     4141 agcttgatcc agttgctaaa attaaccatt cttttgcgcc attttttacg agtgattcta
     4201 gtttttctgc atttgtttgg aaatctgcta aaattactcg acacatttcc tcttcttcat
     4261 taatatacgt catcattgtt ggtttcattt taaacttctc cattcgttac tgtttctgct
     4321 tctactttcc cagcagcttt ttgttctaaa acatacgcgc ggtttgctac gagtacaaat
     4381 ggtaggtaaa tcagcgttcc aacgataata attgcgattt gaaggatgga cgcgcgaatg
     4441 tctccgcctg tcgcaaggta acccgaaagc actggtggcg tcacccacgg aatcaaaata
     4501 taagtttggc taatccagcc ccatgaagtt gcgaagtatg ccattgcagt cgaagctaga
     4561 ggtgcaataa ctaatggaat accataaatc gggttgaata caactggcag tccgaacatt
     4621 agtggttcgc tgacgttgaa aatactcgga attaagccga attttgtgac catgcggtga
     4681 tccggtcgtt tagaagcaat gaaaatcgcg ataactaaac agatgatggt tccgccgcca
     4741 cccatgtata caaaagcatc taaaaacggt tgtgtaacga tgttcggtaa agctgtccct
     4801 gcattcactg catcaatatt ttgttgtaaa gaagttaaaa gaactggtcc agaaatcgcg
     4861 cctaatacga atgcgccgtg aataccaaag acccataaga atcccgctaa aaatacataa
     4921 agtagaatac ctggtaacgt ttggaacccg ccaactaatg gaatttgtag tacttttacg
     4981 ataatttctg gaatactcat tgatacaaaa ctaactacaa gcacttcaat aattgctaaa
     5041 atacttagaa ctaagaatga tggaattaaa atgttaaatg attttgcaat tgccggtgga
     5101 acactttcag gcatagagat ttttaatttt ttacttttcg agaatttcgc aagcatggta
     5161 acactgacta aagcagcgat gattgcaagg aacattcctg tcgaacttgt catttcttgg
     5221 gttaaaacgc cgccagcctc aaaagcttta ccgtcaaccg acattaaatg tgaagatgcc
     5281 ggtattaaaa caacataagc agctacagcg ataacccctt ccgtacgccc ttccattccg
     5341 tatgatttag ctaaaaagtt accaattaag aatgctgcta aaatcgccat aataccgagt
     5401 gtcgcgttat agacttgaat acctacaccc aaataatttt ctacatttgg aatgaattta
     5461 agcagaccat tttctggttg aagtaacacg ttatttacaa gcaagaaaaa tgcggcaata
     5521 atcgtaatcg gaatcatcgc tgcaaagcca tcacgaattg ccatgatatg cttttgcgat
     5581 gaaatttttt gggcaaaaat tgataatcct tcaataaatc ggctagataa acttctctct
     5641 gaactcattt ttttgtcctc ctatgacttt cctgttattt tgtttaaatc tgctacaatt
     5701 gacatccatt tgccggcatt accgacccaa acttccttat aagttgcatt attaaactcc
     5761 ggccagtatg gttcatcttc atttctaaaa gtttccattc cgactggtat ttctcctgtg
     5821 atttcgccat ttagtacact gtattgctgt gcgtagcgat aaccttcgcc atgcatcatt
     5881 gattgtccaa acgggttcat tccaattacc cactgtaact gaccttccgc aatatctaaa
     5941 agcgacttat ctttcaaaat ttttccagca atcgatgcgg cttttcctgc cgaaagtaaa
     6001 atagcgttat ttcctctaaa cgagaaccaa attgggaatt ttcgcaacgc tatctcgtcg
     6061 tttatttgga taccttgctc gaattgtaat tggtattctt ctatcgcccg ttcatctatg
     6121 agtaaatgtt gtaagtggaa acttgcttcg tctaaatact catctttttt ataaagtcct
     6181 gctggaataa gcggatatgg tttagtgaaa cgtgttactt ttttcaaata gtcgccgtac
     6241 atttcgaccg cttgtaacca agtttgtttt tcagcgttac tcggttgcgt ttcaagcgcc
     6301 gcctcaagtg ccagtaaata aagatgttcg cgtgcttgat gattaaaatg ctgaatgacc
     6361 ttgtgcgttt tatcgcggta gaaaaatcct ttgtaaagtt cgctagtttc gctgtctcta
     6421 attccagctt tttcttgcgc ttctagcatc aaatctaacc attcggccgc tttttctgca
     6481 tatatttctt tgtttgttag ttgataaacc atcgaagctg cccaagaagc agtcgcataa
     6541 tatagacttt ctgaggtttg atacgtatgc tcccagaaaa tcggcttttg gctcgttccg
     6601 tgtttttcca gttcctttat cgcaaaaagc aaatcctctt ccgcgattct cagcaaatga
     6661 ttctgcatag tagcattatc cgcaatttgg ctgccaatat acgcttcaat cccggcacaa
     6721 taaaagttct cataagcttg gttatgaacg cgcgcaattg catcatccat cccaccaaca
     6781 agcccatccg tccatctcgt catacctgcg ctagtcgctc taaaaccgtc tccgaagcgc
     6841 gttttcaaaa taaaatctag tccccactcg ccttcttcta aaaggcgcat ccgcaacatt
     6901 tcctcttttt caggtaaact cgaagccatt tcatataaag ccatcgttac ttccgccgtt
     6961 tgaataagct gctgcgaaac atcgcccgca tcgtgccatc caccattaaa tgacaactgt
     7021 ttcccatcgt gttcagcgat aatatctgcg tgacaagtcg tatgtttccc aaaaaccggg
     7081 caaccgcatc gttcgcagaa aataaagtta agcgatttcc agatagaaga ttcccagatc
     7141 acttcggaag tcccaatttg aaaaatttcc gtttgcatat ccgcaaattt taaatagtat
     7201 tcacccacag tttgtaaatc agaaaaatca agaataatga aatcgccagt ttctgttgcg
     7261 ttttggtaac tttttccagt aaaaacaact ttgtctgttt ctttgtcgtg aattgtaaag
     7321 gaagtcgcta caaacttgtt ggcgcaaaac gctactttgg gcatgccctt agagtaaccg
     7381 ttatgcgaat aaactagcgt attatcttgc ggaatccaac ccttggagat ttccggctca
     7441 ctgatttgtt ctaatttaat ttcattaatg aataattcca tcgttccagc agtcaatcgc
     7501 tctgggccat tcaagtaata actaaaactc atttcggtca ttcggtcacg cggcaaacct
     7561 tcaatttcaa aaatgacatc attccattca tggttgatta aattcacacc gtgaacacct
     7621 tctcgcccat atatatcagg cactttcacg ctcccgtcgt ttttaaaact aatcattaaa
     7681 tagggatttg ttactccagg aaaatcaggg aaaacttgga ttcgcacacg attaaagccg
     7741 ctccagtcct cattttcaat cggggccgat atggtaacgt taccaaaatt agtataatca
     7801 ccgtcatccg gagcaccagc gggccaatgc ggcataacca caggcgaaga aagcttgatt
     7861 tcatcttggt cagaaatagt aaaatctcct gctccttgat gtgcaaactc taaagaaaca
     7921 tgttgtttag agctaaataa agtcctactt gataaaactt gtttcttttt cgctaaagtt
     7981 tctaacgcat gcttggtttc aatagggagt ggtcgatgaa taataccagt ttgcgcaatt
     8041 tgtcgtttca tacttggctt cattcttttc ctccttcatt tcctagtctc attccaataa
     8101 cggctgcacc aattaagcca accttatcct tctcaagctt agagcggaca acaccttttg
     8161 taacaaaacg aattgtattg ctttgaagat tacctagtat cttttggaaa aaatgctcat
     8221 tttgcgtcac gcctccgcca agaattacgc attcagggtc ggttgtacgg actaaattca
     8281 taatcaaatt agctagctga aacgttgcat tatcaataat ttcctctgca agctcatctt
     8341 tttgctccgc tgcatgaaga accatttttc cagttagttc tgtttcggct tcagcaagta
     8401 tggatgtcgg gtagttattt aaacgtctca gtgcctcttc tttaatccca agaccggaag
     8461 caagtcgttc cacacaacca cgtctaccgc aaccacagag tacatcacta tgaatatcta
     8521 ctacagcatg accgatttca cccgcgttaa agtgcccgcc ttgtataatt cgtccatcca
     8581 ccacaaaccc agcagcaaga ccagtaccaa catttaaata aataaaatcg tttgtttctt
     8641 gtccccaacc aaattgcttt tcggccattg tggcacaaac aacatcattg cccagactta
     8701 caggtaatcc tgtttttgct tctaaaatgt ctgcgagcgg ggttggattg ctttttccag
     8761 gttcaatctc taaccaaaca cctgacttgt gattcacacg accaactaat cctacaccaa
     8821 tacccgtttg ttttggtgct ataaaaccaa tattttgcgt gtaatcatct aaaaccttta
     8881 acaatgtttc ggtagctttg gtctgattct ccgtattact tgggtaactc ttggaattta
     8941 gcacctcacc atcttttgtt acttcgccaa ttaaaatttt agtgccacct agatcaattc
     9001 cgatgacaga ttcttgtatg tccaactatt ccacctcatt tttggtaacg ttaccaaatt
     9061 aaaacgtttg ttgatagcgc tttctaccat agaataaccg gatattttta atatgtcaac
     9121 cctttttatt atatttttga taacgttacc aaatttcact tgttatttcc ccctaagtac
     9181 gctacactta aaatagttaa aaatgcttac gaggtgaaca tttcgaatga aaaaaataac
     9241 catacaagaa atagctaaac ttagcggtgt ctccgtttca actgtttcgc gggttcttaa
     9301 taacagtcct tctgtgtcag ctgcgaaacg caaaaaaatc caagcaatca ttgatgaaca
     9361 taattacaca cctagcgtgt ttgctcgtgg gatggtcaat aagcagacga agaatatagg
     9421 cgttatttta ccagatattt ccaatcccta tttcatttca cttataacgc aaattcaaaa
     9481 attcgcgcta gattatatgt tttcgacgat tttgttcaat acaatgcttg cggagccaaa
     9541 taataagaat aatcaacatc ccctaacgga agaagattac ttgaaaatca ttttagaaaa
     9601 gcaagtggat ggtttactta ttttaggtgg agaaatcgat aaagaaatcg ttccaaaaga
     9661 gtatataact gctctaaatc agttaaataa tgaaattcca gttgttgtta tcgggtcgaa
     9721 aattcctgag ctcaactgtt tatttattga acgtaattta aaaaaagggg taacaacctt
     9781 agttagtcat ctaactgcac ttggacacaa aaatattggt tttattggcg gagaatctgg
     9841 tgtaaaaatc accacctacc gtctagaatc ttttaaagaa gcaatgacta gctatcaaca
     9901 tccggtaaat gacgactggg tggttctgtc tgattattat acggctgatg gctacgcagc
     9961 aatgactcaa cttttagaaa atagcgctac tttgccgaca gcacttgtag ctatcaatga
    10021 caatgtggct atcggggcaa ttcgagcgat taatgatgcc aaactttctt gccctgaaga
    10081 catcgctatt gtcagctgcg atcaatttat gaatggcgat taccaaactc cgcgtttaac
    10141 ttccatggat caacacaatg aatatcttgg taaaatggct attttacaac taattagcgc
    10201 aattaacggt caagtcgagc caatgattat caaccataat ccagaactaa ttatccgcga
    10261 atcttgcggc tctaagctat aacgaaagga aggtccactt ggaaaaatac ttaatttgtt
    10321 ctgatttaga cgggacatta ctacttaaaa accaaactat ctcaccaaaa acactaaatt
    10381 tattgcaaca actaatagaa gaaggtcatc attttgccgt ttctaccggt cgaatgtata
    10441 attccgcaac agacttcgcc aacctcgttc atccaaaagc agatgtcatt gcttcaaacg
    10501 gcggtgtagt tgcagtatca ggcgaaatta tcctacaaga aaaaatgaaa caatctgcgt
    10561 tactcgagac atttttattg tgccaaaatc atgatttacc tgtgtttttc ttttcaacag
    10621 atactgttta ctacactaaa aatcccccat attattttac ggatgaagaa gataaaggcc
    10681 gcgtaaatgc tacaaaactc gttcctatca aaacaaaaga aagcttcctt gagcatgcgg
    10741 accagttcat taatgggatt gtaatcgagg aagaagattt cgacaaactc gcagcccttc
    10801 gaagtgagct agaaaaacta tccgatgttt ctatcctttc ttcccatgcc aataatatcg
    10861 agatcttacc aaaagatatg gataaaaaat acgccgtgaa aaatctcgct gcacatttaa
    10921 atatcaagcc agaaaatgta attacttttg gtgatggtga aaatgatatt gggatgcttg
    10981 aagttgctgg cgcaggggtt gcgatggaaa atgcaagtga actagtgaaa aaaagtgctg
    11041 attttgttac tactgcaaat gatgccgatg gaatttacta ctttttgaaa aaatatctta
    11101 atcgttaata aaaaaagctg cccacgcgga cagctttttt tcatttattc ttctacggaa
    11161 gcagcttctt catagttaat taatgcaatt aatccgccaa cagcaagtag tacgattggc
    11221 agtaagaaca taatcgaaat tgacattgta cagccaattg cagctgccac catcattgcc
    11281 ccaccaagac gcggcttatg cgaaacaata aacgatcccg caagtcccac tccagaaagc
    11341 acaagtgaac caatcgttaa catatagaag aaaaatgact cctcttctaa tgcctgtgaa
    11401 atatcaggaa taactagaac catcaaacta aatccaatac ccagtgccgc ccctaaaaag
    11461 ccaagtaatc cttcaacttt catgataaaa actccttttt tatacgcatt ttcttttatg
    11521 ttatcatttt aacaaaaaat tgaatagtta tcagcttgga caaatgattt ttcgtaaatt
    11581 acttctaaat aagcagacga ttatgcaaac aatttatcgt tttctgtaaa ttcaaaaaac
    11641 aaattgacca gctctttata ttgtgatacg cttaacaagt ggcgttattc taatagaata
    11701 gaagatgatt atcataaaaa tttcgcatca aaaaacatta gactaattat ggcactggtt
    11761 att
//
LOCUS       DABQVC010000086        11753 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.086,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000086 DABQVC010000000
VERSION     DABQVC010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11753
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.086"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            60..1130
                     /gene="dinB"
                     /locus_tag="IBJ56_001611"
     CDS             60..1130
                     /gene="dinB"
                     /locus_tag="IBJ56_001611"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HAM3417865.1"
                     /translation="MDTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVV
                     ATCSYEARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEP
                     LSLDEAYLDVTENKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKK
                     PAGITVVTPEEAEAFLEQIPVTKFYGVGKVTAEKLHRLGIETGADLKKWSEWDLIREL
                     HKHGYHLYRHVRGRSNNIVNPHRDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEER
                     LIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIR
                     LIGLTVTNLKPVYFENLRLEGL"
     gene            complement(1167..2366)
                     /locus_tag="IBJ56_001612"
     CDS             complement(1167..2366)
                     /locus_tag="IBJ56_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HAM3417866.1"
                     /translation="MTENKPSEETNELKDLVVEKEFNQTLDDLLANPFGSDGESAASI
                     VNNETDAAPRLVDMLTETNKKQALELSKQIEPGNQAAILGYGAPAQAKLHDFSHSMLA
                     HVQKQDVGPIGDIISDLMYRLQEADPDELAARNKNVFTKMFHRVKQSINEITSKYQKI
                     GTQIDRIALKLEHSKKRLMEDNSFLEQLYDKNKDYFQALNIYIAAGELKLEEINTKML
                     PELRKKAEQTGDQMDYQEVNDLTQFADRLDKRVYDLRLSRQITIQQAPQIRLIQNTNQ
                     ALAEKIQSSIMTAIPLWKNQVAIALTLLRQQQAVAAQRQVSETTNELLKRNADMLKTN
                     AIETARENERGIVDIETLKETQSSLIETLQETLKIQQEGRAKRAVAEKELVTMEQELK
                     ERLLEMK"
     gene            complement(2344..3003)
                     /locus_tag="IBJ56_001613"
     CDS             complement(2344..3003)
                     /locus_tag="IBJ56_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-bromo-4-chloroindolyl phosphate hydrolysis
                     protein"
                     /protein_id="HAM3417867.1"
                     /translation="MTVFKKILAFTGSIFLVMLLAGILTSLIHSGLVIAAIVIAVAAI
                     LFFFSSKAGDRAQMIATGLTKKEYKYIRTNLEEARVKIIRLQKIMTQNKALYSFQERN
                     KTLLLTKRIYGIVKDEPKRFYEAEDFFFSHLDSLVELTEKYAFLEKQPVKDKKIYQTL
                     SDTRTLLNDLSRVIEKDLFTLLNQDVNNLDFELEVAKNSISKQKKKFERGTKDDREQA
                     K"
     gene            3277..3834
                     /locus_tag="IBJ56_001614"
     CDS             3277..3834
                     /locus_tag="IBJ56_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HAM3417868.1"
                     /translation="MDSLEEKTLHTEKIFSGNIIELQVDDVELPNGEKGKREIVKHPG
                     GVAIIPFSADGRMYLVEQFRKPLEKNIIEIPAGKMEPGEDPLVTAKRELEEETGFQSD
                     DLTYLTSFYTSPGFASELLYIYVARDLRKMEHPLAQDADEFINLVKVTLEEAEQLIAQ
                     QCIHDAKTMYAIQYWKMQLLIEENE"
     gene            4308..5195
                     /locus_tag="IBJ56_001615"
     CDS             4308..5195
                     /locus_tag="IBJ56_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417869.1"
                     /translation="MEAIKVESLTKNYHKKRAIENVNLSVNEGELYGFIGPNGAGKST
                     TIKVLLNFIYATSGSATVLGKDVVKDSAEIKKMVGYVPSEVRYYPQMTANDIIHYAAK
                     FHHIENATQKMNKYYEMFSIDPKKRFGEMSLGNKKKVAIVAGLITEPELFILDEPTNG
                     LDPLMQHYLFKEMTERNKEGMTIFLSSHNLREVQEYCTRAAFIRNGNIIAVEDIANQQ
                     MTGKVIALKGTNLPLEKLTNAGARIIEKEAGKARLIFDDDIKTILPLLQEKEITDLTI
                     TNQELEDKFMTLYEGGEIK"
     gene            5192..6007
                     /locus_tag="IBJ56_001616"
     CDS             5192..6007
                     /locus_tag="IBJ56_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3417870.1"
                     /translation="MNILHIEWKTRIKSLVVWAVVVIVILGVFMAFFPSMQSSGMQDL
                     VNTKMNALPQDMMKILHMDSMADLTNIDAYFAYVFQYIFIAACVYAALIGAQALIKEE
                     TDGTIEFLYAQPITRSSLVFWKMIGNLLSFVAFWVITFVASVALVLFLKPSGVDGGNL
                     VMELVRVFSSELLVAAVFMSAGFMVSSVLRSAKQASPVALALVFLTYILGIMAGLNDK
                     VDFFQYFSPINYAIPSEIMDKGITGTNALISCGVIVVMVAMTFVLYKKKDLKV"
     gene            6007..6627
                     /locus_tag="IBJ56_001617"
     CDS             6007..6627
                     /locus_tag="IBJ56_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3417871.1"
                     /translation="MDEKRLKILEVAMGEFTEKGYQAASTNKICAKAGVSKGLIFHYF
                     GSKEKLYIAAVSYAVDFATKEVRLEGEHWGDFVEMAIWSTKMKLDFNRKYPAVFGLIM
                     QAYGNPPVALKDKLEGFFDKAIERSEAQMNQVLSEMKLKKDVNMDAARKVMAALFKHI
                     TEISTVYLQSHPNATMEDFVPLAKDFTEMMRIVEFGICEEKKDLGE"
     gene            complement(6643..7641)
                     /locus_tag="IBJ56_001618"
     CDS             complement(6643..7641)
                     /locus_tag="IBJ56_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAM3417872.1"
                     /translation="MPNEVYDVTIIGGGPIGLFSAFYSGLRSMKTKIIDAEPAVGGKV
                     RYFFPEKIIRDIGGIPAITGENLVANLKQQAETFHPTIVCSERVVDVTKLSDGTFQLT
                     SHNGSIHFSKTIVIATGSGTFEVNKLEALHAEDFPFAIHYDVKNIEQFRDKVVVVSGG
                     GNSAIDWAQTLEPIAKQVHLIYRGEDFKAHEESVRELQNSRVEIHIHHEINELIGTNN
                     QLTKINVCCNKTQATKTIQTDALFINHGVKVDLGTMAEWGFEQADFGIVVDDEMKTTV
                     PGIFACGDSATYPRKIRIIAAGLHEGPIAINSAKKYLEPTAADEAMISTHHESFIG"
     gene            complement(7631..8455)
                     /locus_tag="IBJ56_001619"
     CDS             complement(7631..8455)
                     /locus_tag="IBJ56_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3417873.1"
                     /translation="MKDLHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKST
                     ILKTMSRLMKPSKGAVYLDGKTIHSQPTRDVAKQLAILPQNPSAPDGLTVFELISYGR
                     SPHQSSFKSITAKDREIIFWSLRVTNLMELADRPIDSLSGGQRQRAWIAMALAQETDV
                     LFLDEPTTFLDMTHQLDVLNLLKQLNQSENRTIVMVVHDLNHASRYAHHMIAIKEGKV
                     IAEGTPTNVMTEQTLEDVFNIKADILIDPRSGVPLCLPYETCNGCEIVKELDSSAK"
     gene            8620..9561
                     /locus_tag="IBJ56_001620"
     CDS             8620..9561
                     /locus_tag="IBJ56_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-hydroxamate ABC transporter
                     substrate-binding protein"
                     /protein_id="HAM3417874.1"
                     /translation="MKKGIILLVSMLLIAVVLTACGDNKSAGKEKVEMRTYTMANGKK
                     VEIPAHPKRIVASEYLGNIVLLGMKPVGARAKQMENPFLKGRVDGIADIGDPVSAEKV
                     AELKPDLIIVSNDDEFEAMSKIAPTVLIPYATSKNVEEDVRQIADLVGEKKAGEAWLD
                     KFHQKAKESRAKLAGKLDPNETVGIYEVQDKDFYVMGQNMGRGGQAIYNALQLKAPAK
                     IQKDVLDGQDWQKISLEVLPEFAADRMFVTSTSSGSAKDGEKTLKDLTNSPIWKNLPT
                     FKAGNVYQMDFDTMFYYDPLAVEGQLDIIVEKLLASN"
     gene            9663..10688
                     /locus_tag="IBJ56_001621"
     CDS             9663..10688
                     /locus_tag="IBJ56_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HAM3417875.1"
                     /translation="MDKSKQIKMNTRPTVAKFILSGGILLLLILALFGIAVGAADINL
                     STVWDALFHYNSSDTQHQIIRSLRVPRVVADMAIGAAFAVAGAIMQGITRNPLADSGL
                     LGLNAGSTFMVAVCFAFMPWLSYNSLILFSFVGAAIGAFLVFGVSSLAGSAMSPTRLV
                     LAGAAVSSLLTALSEGLAIYFQLSQDLAFWYAGGVAGVKWSQLAAIWPWLLGALIAAI
                     LLSRSITILSLGDDIAVGLGEKTTFVKIASMVVVLILAGLAVSVVGPVGFIGLIVPHL
                     VRFLVGVDYRWIIPCSAVVGAFLTLAADIVARTINPPYETPISVIFALIGVPFFLYVA
                     RKERRNL"
     gene            10688..11710
                     /locus_tag="IBJ56_001622"
     CDS             10688..11710
                     /locus_tag="IBJ56_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HAM3417876.1"
                     /translation="MYMTTAEKRKKSRRVWTLIILSVLIFCTFTYSVNAGYSKLPFLE
                     VIKSFFGMADAGTQLIVTEFRLPRIVIALLVGAGLAVSGTILQGISGNGLADPGILGI
                     NNGAGLAVMLYISFFPSTMDVPVLFMPFIGFVGAILTAFVVYGLSYSRSEGLLPNRLL
                     LTGIAVAAAIAALITLLTVRLDPQNYQRYAEWMAGNIWASSWQYVYALLPWLIVLGAI
                     AFMKVKTLDVLSFGDQVATGLGVRVEREKFVLLIVAVGLAAACVSVSGGIAFIGLIGP
                     HIARKLVGSAHRWVMVTAALSGGLLLLLADTIGRLIIQPSEIFAGIVVAIIGAPYFLF
                     LLAKAK"
BASE COUNT         3377 a         1912 c         2688 g         3776 t
ORIGIN      
        1 atgaggataa cctttataat tgaataagaa cgtttgttcg tttcggagga gatgcagtta
       61 tggatacgag tagaaaaatt attcatattg atatggacgc tttttatgca tctgtggaac
      121 aacgcgacca tcctgagttt cgagggaagc cacttattat tggtggagac cctaataaac
      181 gcggagttgt tgcgacttgt tcttatgaag cgcgcaaatt cggtgtgcat tcagctatgc
      241 ccaccaggca agctgctaaa ctttgtccga acggtatttt tattcacggc aatatggctc
      301 attatgtaga ggtttctaat caaatccgcg agatcttttc cagatatacg gatattatcg
      361 aaccgctctc tttagatgaa gcttatctgg atgtaactga aaacaaaaaa ggaatgaaat
      421 ccgccacaat ggttgcacgc gagattcagc agacgattta ccaagagctt ggtctaactg
      481 cttctgccgg cgtatcattt aataaattta tcgcaaaaat cgcttctgat tttaagaaac
      541 ctgctggtat tacggtagtt acaccagaag aagcagaagc ctttttagaa caaataccag
      601 tcactaaatt ttatggggta gggaaagtaa ccgcagaaaa attgcatcgt ttaggaattg
      661 aaacgggagc agatttgaag aagtggagcg agtgggacct tattcgcgaa ttacacaaac
      721 atggctatca tttatatcga catgttcgag gtcgttctaa caacattgtg aatccgcatc
      781 gtgatcgcaa gtccgttggt aaagaaacta cttttgaatt taatgtgtta gatagccgag
      841 ttctcgaaca aagcctcatg caatttgcca aaaaagtaga agaacggctc attaaactac
      901 aaaaacatgg taagacggta gtactaaaac tacgctacag tgactttaca accattacta
      961 agcggcttac tttaaacgaa tataccaatg atgcaagtca aatttatcaa gcggcggccc
     1021 ttcttttaag agaaagctat actggtcagg atagtattcg tttgattggg cttactgtaa
     1081 ccaatttaaa acccgtttat tttgaaaatt tacgtttaga aggactataa aaaaggctag
     1141 cacgatttag gtgctagcct ttttgattat ttcatttcca gtaaacgttc tttaagttct
     1201 tgttccattg ttacaagttc tttctctgct acggcacgtt tagcacggcc ttcttgttgg
     1261 attttaagcg tttcttgcaa ggtttcaatt aagctggact gcgtttcttt aagtgtttcg
     1321 atgtctacga tacctctttc gttttcacgc gctgtttcga tagcgtttgt ttttagcata
     1381 tcggcgtttc gttttagaag ttcgttcgtt gtttcagaaa cttggcgctg agctgctacg
     1441 gcttgttgtt gacgaagcaa ggtaagcgcg atagctactt ggtttttcca aagtggaatc
     1501 gcagtcataa tggaagactg gattttttca gcaagtgcct ggtttgtatt ttggattaag
     1561 cggatttgcg gtgcttgttg gatagtgatt tgacggctta ggcgtaaatc atatactcgt
     1621 ttatccagac ggtcagcaaa ttgcgttaag tcattcactt cttggtaatc catttggtcg
     1681 ccagtttgtt ctgctttttt gcgaagttct gggagcattt ttgtattaat ttcttctaat
     1741 tttaattctc cagcagcaat gtagatgtta agtgcttgga agtaatcttt atttttatca
     1801 taaagctgtt ctaggaaaga gttatcttcc attaaacgct ttttggaatg ttccagtttc
     1861 aacgcgatgc ggtcaatttg ggtaccaatt ttttgatatt tagaagtaat ttcgttgatg
     1921 gattgtttta ctcggtggaa cattttagtg aaaacatttt tattacgagc ggcaagttca
     1981 tcgggatccg cttcttgtaa acgatacatt aaatcgctaa taatatcgcc aattggtcca
     2041 acatcttgct tttgtacatg tgctaacatt gaatgagaaa aatcgtggag tttggcttgg
     2101 gctggagctc cgtatccaag aatcgctgct tgatttccag gttcgatttg tttggataac
     2161 tctaatgctt gttttttatt tgtttcagta agcatatcga caaggcgagg agctgcatct
     2221 gtttcattat ttacgatact tgcagctgat tcaccatctg atccaaacgg gttagcaagg
     2281 agatcatcta acgtttggtt gaattctttt tcaactacta aatcttttaa ttcatttgtt
     2341 tcttcacttg gcttgttctc ggtcatcttt tgtacccctt tcaaatttct ttttctgttt
     2401 agaaatggag tttttcgcta cttctagttc gaagtcaagg ttgttcacat cttgattcaa
     2461 aagtgtaaat aaatcctttt caataacacg acttaaatca tttaaaagtg tgcgcgtatc
     2521 agaaagtgtt tgatagattt ttttgtcttt tacgggttgt ttttctaaga aagcatattt
     2581 ttctgttagc tccactaaag agtcaagatg ggagaaaaag aaatcttctg cttcataaaa
     2641 acgttttggc tcatctttta caatgccata aattcttttt gtaagtaaaa gtgttttgtt
     2701 acgctcttgg aaagaatata acgctttgtt ttgagtcatg attttttgaa ggcggataat
     2761 tttcacacgt gcctcttcta agttagtgcg aatatattta tattctttct tggttaatcc
     2821 agttgcaatc atttgcgcac ggtccccagc tttagatgaa aagaaaaata ggatagccgc
     2881 aacagcgata acaattgctg caattaccaa accactatgg attagtgaag tgaggatacc
     2941 agccaaaagc atgacaagga aaatggaacc tgtgaatgct aatatctttt taaaaacggt
     3001 cattatacat cttctccttt aagtacctgt ttaaaaggtc cgcttttctt atagtaaatt
     3061 tttctaaaat aaagattgat ggaaattaac ctaccattta agtatatttt gtaagcgaaa
     3121 actaggcaag ctgaatggtt tttatatttt agaaattgtc ctttatttgt tcttatcata
     3181 ccatatttag aaaatagatg ttatcagtcg tgcgatgtaa attaaactcg gacttagtta
     3241 tgttataatg aaaaaaatga gaggtaggtg gcagaaatgg actcactaga ggaaaaaacg
     3301 cttcatacag aaaagatttt tagcggaaat attattgaat tgcaagtaga tgatgtggag
     3361 ttaccaaacg gggaaaaggg caagcgcgaa atcgtcaagc atcccggtgg tgtggcaatt
     3421 ataccttttt cagcagatgg aagaatgtac ttagtagagc aattccgaaa gccactcgaa
     3481 aaaaacatta tcgaaattcc agctggtaaa atggagccag gggaagatcc gctcgtgacc
     3541 gcaaaacggg aactagaaga agaaactggt tttcagtccg atgatttaac gtatctcact
     3601 tctttttata catcacctgg gtttgctagt gaacttttat atatttatgt agcgcgtgac
     3661 ctccggaaaa tggagcatcc attggcgcaa gatgcagatg aatttattaa tttagtcaaa
     3721 gtaacgctgg aagaagcaga acaattaata gcacaacaat gcattcatga cgcaaaaaca
     3781 atgtacgcga tacagtactg gaaaatgcaa ctattaatag aagaaaatga ataaatcgga
     3841 tgaaaaactc atttgggaat acttggcata aagaatggaa atgtggtatc ataaacatga
     3901 aaagagagtc gtgcaagaac atgaccctca aatgtaagcc ccatttaagg tggcagctag
     3961 tctaatatgg tataaaaata accactaaac tcgccaaagt ttatgagtgg ttattttttt
     4021 gtgttatttt gactgtttat taacaacatt aaagttgtaa aagcgactgc aaaagagagt
     4081 gcttcataaa cggtcatggg ttatcctttc caggagttcc taacaaaaaa gtcataggca
     4141 tctccctttc atgttgaaag agctagcatg aaaacagtaa tttgaatact tttactggat
     4201 acagtcttac agatttttat tgtgttatgg ttcttaattg actacctggt caaaagggat
     4261 tatactctag ttgactaagt ggtcaatttg agtgtggagg agagaacatg gaagcaatta
     4321 aagtggagtc gctcacaaaa aattaccata aaaagcgagc aattgaaaat gtgaatttgt
     4381 ctgtaaatga aggagaactt tatggtttta tcggtccgaa tggtgcgggg aaatcaacga
     4441 caattaaagt cttactgaat tttatttacg caacgagtgg gagtgcgacg gttctcggga
     4501 aagatgtggt gaaagactct gctgaaatta agaaaatggt cggttatgtg ccaagtgaag
     4561 ttcgctatta tccccaaatg acagcaaatg atattatcca ttacgctgcc aagttccatc
     4621 atattgaaaa tgcaacgcaa aaaatgaata aatattatga aatgttttcg attgatccga
     4681 aaaaacgctt tggagaaatg tcgcttggaa ataaaaaaaa agtggcgatt gttgctggac
     4741 ttattactga gccggaatta tttattctgg atgaaccgac gaatggcctt gatccgttaa
     4801 tgcaacatta tttatttaaa gaaatgactg agcgaaataa agaaggaatg acgatttttc
     4861 tttctagtca taatttacgt gaggttcagg aatattgtac aagagctgct tttattcgaa
     4921 atgggaatat tatcgcggtg gaagatatcg ctaatcaaca aatgacgggt aaagtaatcg
     4981 cgctgaaagg aacgaatttg ccactggaaa aattaacgaa tgcgggcgca agaattatcg
     5041 aaaaggaagc gggaaaagcg cggcttattt ttgatgatga tattaagacg attttgccat
     5101 tattacaaga aaaagaaatt acggatttaa cgattactaa tcaagagctg gaagataaat
     5161 ttatgacgct atacgaaggg ggagaaatca agtgaatatc ctacacattg agtggaaaac
     5221 gcgaataaag agtctggttg tttgggctgt tgtggtgatt gtgattttag gggtgtttat
     5281 ggctttcttc cctagtatgc aaagtagtgg aatgcaagat ttagtgaata cgaagatgaa
     5341 tgcacttccg caagatatga tgaaaatttt gcatatggat tcaatggcgg atttaacgaa
     5401 tattgatgcc tattttgcgt atgtttttca gtatattttt attgcagctt gtgtgtatgc
     5461 agcattaatt ggtgcgcagg ccttgataaa agaagaaacg gatggaacaa ttgaattttt
     5521 atatgcgcaa ccaattacgc ggtctagtct tgttttttgg aaaatgattg ggaatttatt
     5581 gtcatttgtg gctttttggg tgattacatt tgtagcttca gtggcgctag ttcttttctt
     5641 gaagccgagt ggggttgacg gaggaaactt agtaatggag cttgtacgag tgttttctag
     5701 tgagttgcta gtggctgctg tatttatgag tgctggtttt atggtttcat cggtgcttcg
     5761 ttccgctaag caagcttctc cggttgcact tgcgcttgtg ttcttaacgt atattttagg
     5821 aattatggct gggttgaatg ataaggtcga tttcttccaa tatttttcac caattaacta
     5881 tgcaattccg tctgagatta tggataaagg gattacagga accaatgcac tgatttcttg
     5941 tggggtaatt gttgtgatgg ttgctatgac atttgttctt tataagaaaa aggatttgaa
     6001 agtataatgg atgaaaaacg attaaaaatt ttagaagtag caatgggaga atttacggaa
     6061 aaaggatatc aggcggctag tacgaataaa atttgcgcaa aagctggtgt ttccaaaggg
     6121 ctgatttttc actattttgg ttctaaagaa aagctttata ttgcggctgt tagttatgcg
     6181 gttgattttg cgaccaagga ggttcgtttg gaaggggaac attggggaga ctttgtcgaa
     6241 atggcgattt ggtcaacgaa gatgaaactg gattttaatc gcaaatatcc tgctgtgttt
     6301 ggcttaatta tgcaagctta tggaaatccg ccagttgcat tgaaagataa acttgagggc
     6361 ttttttgata aggcgattga gcgatcagag gcgcaaatga atcaagtttt aagtgaaatg
     6421 aagttgaaaa aagatgtaaa tatggatgca gcgcgtaaag tgatggcggc tctttttaaa
     6481 catattacgg agattagtac agtttatttg cagagccatc caaatgcgac gatggaagat
     6541 tttgttccgc ttgcgaagga ttttacggaa atgatgcgaa ttgtcgaatt tgggatatgc
     6601 gaagaaaaaa aggatttggg cgagtgagcc caaatccttt ttttaaccaa taaagctttc
     6661 gtgatgcgtg ctaatcatcg cttcatctgc ggcagttggt tctaaatatt ttttcgcact
     6721 attaatcgcg atgggccctt catgaagtcc cgctgcgata atgcgtattt ttcgagggta
     6781 agtcgcacta tctccacaag cgaaaatgcc aggaaccgtc gttttcatct cgtcatccac
     6841 gacaatgcca aaatctgctt gttcaaagcc ccattccgcc atggttccaa ggtctacttt
     6901 taccccgtga ttaatgaaaa gtgcgtctgt ttgaattgtt ttcgtggctt gggttttatt
     6961 gcagcaaaca ttgattttgg ttaactgatt gtttgttccg attagttcat tgatttcatg
     7021 gtggatatgg atttcgacgc gagaattttg aagttctcgg acactttcct cgtgtgcttt
     7081 aaaatcttcg ccacggtaaa taaggtgtac ttgtttggca atgggttcga gtgtctgagc
     7141 ccagtcgata gcggaatttc caccaccaga aaccactact actttatcgc ggaattgctc
     7201 gatatttttg acatcataat ggattgcaaa tggaaaatct tcagcatgta gagcttcaag
     7261 tttattgacc tcaaacgtgc cactacctgt agcaatgaca atcgtttttg aaaaatgaat
     7321 cgaaccgtta tgcgaagtta attgaaaagt gccatctgat agttttgtca catcgacaac
     7381 tcgctcactg caaacaatag tcggatgaaa ggtttctgct tgttgtttta aatttgcgac
     7441 aagattttcg ccggtaatgg cgggaatacc accgatatcg cgaatgattt tttctggaaa
     7501 aaagtagcga actttcccgc caacagcagg ttcagcatcg ataatttttg ttttcatgga
     7561 acgaagccca ctataaaatg cggagaataa gccaatggga ccgccgccga taatggttac
     7621 atcataaacc tcatttggca ctggaatcaa gctcctttac aatttcgcat ccgttgcaag
     7681 tttcgtaggg gaggcaaaga gggacaccgc tgcggggatc aattaaaata tctgctttga
     7741 tattaaaaac atcctctaaa gtttgttcag tcatgacatt ggttggtgtt ccttctgcga
     7801 tgactttccc ttctttaata gcgatcatat ggtgagcgta acgagatgcg tgatttaaat
     7861 catgaacaac catcacaatt gtgcggttct ctgattgatt taattgtttc aataaattaa
     7921 gtacatctag ttggtgcgtc atatctaaaa aggtcgtcgg ttcatcaaga aatagtacat
     7981 ctgtttcttg ggcaagcgcc atggcaatcc atgcacgctg tcgttgtcca cctgataaac
     8041 tatcaattgg tcgatccgct aactccatta aattcgtcac gcgcaatgac caaaaaataa
     8101 tttcgcgatc ttttgcggta atcgatttaa agctactttg gtgtggggaa cgtccataag
     8161 aaattaattc aaacaccgtt aaaccatcag gtgcagaagg attttgtggc aaaatagcta
     8221 gttgtttggc aacgtctctc gttggctgac tatgaatcgt cttgccatct aaatacacag
     8281 cgcctttgct aggtttcatt aagcgggaca tcgtttttaa aatagtcgat ttccctgagc
     8341 catttgcacc tactaaagcg gttattttat tcgctggaat ggctatatct aaaccatcaa
     8401 caatgattcg tttgtcgtat gaaatttgta agttatcggt atgaaggtct ttcattttca
     8461 tcgctccaat ttaaaggtaa ggtgataatc attctcaatg gttaagtata gagtttttat
     8521 ggtgaagatg caagcgttac tttgccgaaa tgatttgcac tttgtgaata aagttgctat
     8581 actaattgag aattattatc aattactgga ggggttcaat tgaaaaaggg tatcatttta
     8641 ctcgtgtcaa tgcttttaat tgcagtggtt ttaactgctt gtggagataa caaatcggct
     8701 ggaaaagaga aggtcgagat gcgtacatat acaatggcaa atggaaagaa agtagaaata
     8761 ccagcacatc cgaaacgtat tgtggcttcg gaatatctag ggaatattgt tttgcttgga
     8821 atgaagcctg tgggggctag agcgaaacaa atggaaaatc cgtttttgaa agggcgtgtg
     8881 gatgggattg cagatattgg tgatccagtt tcagcagaaa aagtggcgga attaaaacct
     8941 gatttaatca ttgtttcaaa cgatgacgaa tttgaggcaa tgtcgaaaat tgcgccaacg
     9001 gtgttaattc cgtacgcaac ttcaaaaaat gtggaggaag acgttcgcca aatcgcggac
     9061 ttagttggag aaaaaaaggc tggagaggcg tggctagata agtttcatca aaaagccaaa
     9121 gaaagtagag cgaagttggc tggcaagtta gatccgaatg aaacagtagg gatttatgaa
     9181 gtacaagata aagattttta tgtgatggga caaaatatgg ggcgaggtgg tcaagcgatt
     9241 tataatgctt tacaactaaa agcaccagca aaaatacaga aagatgtttt agatgggcaa
     9301 gattggcaaa agatttcact ggaagtttta cctgaatttg cggccgatag aatgttcgtt
     9361 acaagcactt cttctgggag tgctaaagac ggcgagaaaa cattaaaaga tttaacgaac
     9421 tcgccaattt ggaaaaatct gccgacgttt aaagcaggga atgtttacca aatggacttt
     9481 gacacgatgt tttattatga tccattagcg gtagaaggac agttggatat tattgtagag
     9541 aagttacttg cgtccaacta atgattgcgc ttagtgaatg atattgatat aattttcttt
     9601 gcgattgata attattatca cttaaaatga gcggataatt tagatggaag gaacatgtgc
     9661 agatggataa gtcaaaacag ataaaaatga atacaagacc gactgttgct aaattcatac
     9721 tttcgggtgg gattttgttg cttctcattt tagcgttatt cgggattgcg gttggtgcag
     9781 ccgatattaa tttaagtacg gtttgggatg cactttttca ttataatagt tcggatacgc
     9841 agcaccagat tatacgtagt ttacgtgttc ctcgggtggt tgcggatatg gcgatagggg
     9901 ctgcttttgc ggttgctgga gcgattatgc aaggaatcac tcggaatcca cttgctgatt
     9961 caggcttgct tgggttgaat gctggatcga cgtttatggt agcagtttgt tttgcattta
    10021 tgccttggct tagttataat tcgctcattt tattttcttt tgttggggcg gcaattgggg
    10081 catttttagt atttggcgtt agttctcttg cagggagcgc aatgtcgcca acgaggctag
    10141 tgcttgctgg agcggcggtt agttcattgc ttactgcgct tagtgaagga ctcgcgattt
    10201 attttcagtt aagtcaggat ttggcctttt ggtacgcggg cggtgttgct ggtgtgaaat
    10261 ggagtcagct tgcagcgatt tggccttggt tacttggagc gcttattgcg gcgattttgc
    10321 taagtagatc gattaccatt ttaagcttag gcgatgatat tgctgttggt ttaggtgaaa
    10381 aaactacttt tgttaaaatt gcttcgatgg ttgtggtgtt gattttggcg gggcttgctg
    10441 tgtcggttgt tggtccggtt gggtttatcg gcttgattgt accgcatttg gtacgatttt
    10501 tagttggagt agattatcgc tggattatcc cttgctcggc ggttgttgga gcctttctga
    10561 cattagcggc ggatattgtg gcgagaacaa tcaatccgcc atatgaaacg ccaatcagtg
    10621 ttatttttgc attaatcggg gttcctttct tcttatatgt agcacgtaaa gaaaggagga
    10681 acttataatg tatatgacaa cggcagaaaa acgaaaaaaa tcgcggcgag tttggacgtt
    10741 aattatttta agcgtgttaa ttttttgtac atttacatat agtgtcaatg ctggttattc
    10801 gaaattgcca tttttggaag tgattaagtc gttttttgga atggcggacg cgggaacaca
    10861 acttattgtg acggagtttc gtttgccacg gatagttatt gcgctattgg ttggtgcagg
    10921 tcttgcggtt tcaggaacaa tcctacaagg gatttctgga aacggattag ctgatccggg
    10981 aattcttggg attaataatg gcgcgggact tgcggttatg ctttatattt ccttttttcc
    11041 ttccacgatg gacgttccgg tgttatttat gccatttatt ggatttgtcg gggcaatttt
    11101 aactgcgttt gttgtttacg gactttctta tagtagaagc gaaggattgt tgcctaatcg
    11161 attgcttctt acggggattg ctgttgcggc ggcgattgcg gcacttatca cactgcttac
    11221 ggttcggctt gatccgcaaa attatcaacg ctatgctgaa tggatggcag gaaatatttg
    11281 ggcttcaagc tggcaatatg tttatgctct tttgccatgg cttattgttt taggtgcaat
    11341 tgcttttatg aaagtaaaga cgttggatgt gctctctttt ggagaccaag tggcaaccgg
    11401 actcggcgtt cgggttgagc gagaaaaatt tgtgctttta atagtagcag ttggtttggc
    11461 agctgcttgt gtatccgtta gtggcggtat tgcatttatt ggtctaattg gtccgcatat
    11521 tgctagaaaa ttagttggat ccgcacatcg ctgggtgatg gtaacggcgg cactttctgg
    11581 agggctacta ttattacttg cggatacgat tggacgattg attattcaac catccgaaat
    11641 atttgctggt atcgttgtgg caattatcgg tgcaccttat ttcttgttct tgcttgcaaa
    11701 agctaaataa taattattat tgataacgag aaattaatta gtaattgata atc
//
LOCUS       DABQVC010000087        11621 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.087,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000087 DABQVC010000000
VERSION     DABQVC010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11621
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.087"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            567..2261
                     /gene="ilvD"
                     /locus_tag="IBJ56_001623"
     CDS             567..2261
                     /gene="ilvD"
                     /locus_tag="IBJ56_001623"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HAM3417877.1"
                     /translation="MRSDKIKKGVEQAPARSLLHATGQIKSPGDMDKPFIAICNSYID
                     IVPGHVHLRELADVAKEAIREAGGIPFEFNTIGVDDGIAMGHIGMRYSLPSREVIADA
                     AETVINAHWFDGVFYIPNCDKITPGMLLASVRTNVPAIFCSGGPMKAGLSAHGKALTL
                     SSVFEAVGAFKDGSMSQEDFLDMEANACPTCGSCAGMFTANSMNCLMEILGMAVPGNG
                     TTLAVSDARRDLIRESAFHLMDLVKKDIRPRDIITKDAIDDAFALDMAMGGSTNTVLH
                     TLALANEAGIEDYDLERINDIAKRVPYLSKIAPSSSYSMHDVHEAGGVSAIVKELVDL
                     GGAIHPDRITVTGKTIRENVADAKINNTDVIHPKENPYSPVGGLSMLFGNIAPKGAAI
                     KVGGVDPSVQVFKGEAICFSSHDEAVEAIDNHTVREGHVVVIRYEGPKGGPGMPEMLA
                     PTSSIVGRGLGKDVALITDGRFSGATRGIAVGHISPEAAAGGPIALVHDGDIITIDLP
                     NRTLNVDVSDEVLEERRKELPKFKAKVKTGYLARYTALVTSAHTGGILQIPEDLID"
     gene            2279..4000
                     /gene="ilvB"
                     /locus_tag="IBJ56_001624"
     CDS             2279..4000
                     /gene="ilvB"
                     /locus_tag="IBJ56_001624"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HAM3417878.1"
                     /translation="MIDTTKTNEKATKKQNKSGAELLIDSLKKQQVEMIFGYPGGAVL
                     PLYDAFYDCDIPHILTRHEQGAIHAAEGYARVTGKPGVVVVTSGPGATNVLTGIADAM
                     SDSIPLVIFTGQVHTPGIGKDAFQEADMIGLTIPITKYNYQVRDVRDLPKIVNEAFHI
                     ASTGRKGPVVVDIPKDMGIIQTESVRPDTIDLPGYQPTYSPNPLQLEKLMQSLSAASK
                     PLILAGAGVNHARATAELLEFAERYQIPIVNTLLGLGSFPQSHDLFLGMGGMHGSYAA
                     NMALTDCDLLINFGSRFDDRLASAPKEFATKATIAHIDIDPAEIGKIIETQIPIVADI
                     NETLTQLLQMELPVHPDTSHWYKLNMTRKNRHPFNFDRTKKAEIKPQRVIELIGEITQ
                     GEALVSTDVGQHQMWAAQFYPFQFDHQIITSGGLGTMGFGFPAAVGAQLAFPDKTVVA
                     IVGDGGFQMTNQELAILNDYQINVKTVIINNGSLGMVRQWQEKFHGERYSHSIFTSQP
                     DFVKLSEAYGVKGVRLTNPETLEKDLRKAFAHPGPIVIDVHVSKDELVLPMVPSGKPN
                     HQMEGVE"
     gene            4001..4492
                     /gene="ilvN"
                     /locus_tag="IBJ56_001625"
     CDS             4001..4492
                     /gene="ilvN"
                     /locus_tag="IBJ56_001625"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HAM3417879.1"
                     /translation="MRRIITATVNNSSGVLNRITGVISRRQYNIDSISVGWTEIPNVS
                     RITIVVHVDSLYEIEQVTKQLNKQIDVLKVSDITDDAHIERELALLKINSPAALRSEL
                     NAVIEPFRATVIDVGTKNVVIQVTGTSEKIDAFVDTVRPYGIKQMARTGVTGFTRSPK
                     KMG"
     gene            4591..5586
                     /gene="ilvC"
                     /locus_tag="IBJ56_001626"
     CDS             4591..5586
                     /gene="ilvC"
                     /locus_tag="IBJ56_001626"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HAM3417880.1"
                     /translation="MTKVYYEDAVKNNALEGKTVAVIGYGSQGHAHSQNLRDNGNNVI
                     IGIREGKSAESARNDGFDVYSVSEAAEKADVIMILLPDETQGETYENEIKPNLKAGNA
                     LVFAHGFNIHFDVINPPSDVDVFLVAPKGPGHLVRRTFVEGGAVPSLFAIYQDATGNA
                     RDTALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGATHLIQAGFETLVEAGY
                     QPELAYFEVLHEMKLIVDLMYEGGMEKMRHSISNTAEYGDYVSGPRVVTADTKKAMKE
                     VLTDIQNGNFAKSFIDDNKNGFKEFHRMRKEQQGHQIEKVGAELREMMPFVKPQH"
     gene            5745..7283
                     /locus_tag="IBJ56_001627"
     CDS             5745..7283
                     /locus_tag="IBJ56_001627"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HAM3417881.1"
                     /translation="MKKIQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEA
                     GFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSPQIHIFLATS
                     DVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDA
                     GATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIE
                     NGASRVEGTINGIGERAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLS
                     GMPVPRNKAVIGGNAYAHESGIHQDGVLKNPDTYEIITPALVGVDKNSLPLGKLSGKH
                     AFNTRMEEMGYTLTEQEQKDAFKRFKQLADAKKEVTEEDLHALILGQSSESADDFELK
                     HLQVQYVTGGVQGAIVRIEERDGALVEDAATGSGSIEAIYNTINRLMKQDIELTDYRI
                     QAITAGQDSQAEVHVVIKNDKGAVFHGIGIDFDVLTASAKAYLQASGKSKTASKQADF
                     EEVK"
     gene            7285..8337
                     /gene="leuB"
                     /locus_tag="IBJ56_001628"
     CDS             7285..8337
                     /gene="leuB"
                     /locus_tag="IBJ56_001628"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HAM3417882.1"
                     /translation="MTYKITSLAGDGIGPEIMTSGLQVLEAVAKKYNHTFEIESHPFG
                     GAGIDVAQDPIPSSTLKACRDADAILLGAIGGPKWDNAPKRPEDGLLALRKALGLFAN
                     IRPIQVPSSITHLSPLKKEIVENTDFVVVRELTGGLYFGEPKYWDNEAAVDSLTYTRA
                     EIERIIEKAFEIAATRNKKVTSVDKANVLASSKLWRKIADEVASRHPDITLEHLYVDA
                     AAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGS
                     APDIANQNIANPMSMISSVSMMLRQSFSLFEEADAIDAATARTMQAGFLTADLGGNTS
                     TTDFTNEVLKQIEGGE"
     gene            8339..9727
                     /gene="leuC"
                     /locus_tag="IBJ56_001629"
     CDS             8339..9727
                     /gene="leuC"
                     /locus_tag="IBJ56_001629"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HAM3417883.1"
                     /translation="MGKTLFDKLWNRHVIYGKEGEPQLLYVDLHLIHEVTSPQAFEGL
                     RMENRPLRRPDKTFATMDHNVPTEDIFNIQDLVAKKQIEALQTNCEEFGVTLADMGSD
                     RQGIVHMVGPETGLTQPGKVIVCGDSHTATHGAFGAIGFGIGSSEVEHVFATQTIWQQ
                     KPKSMGIEINGNLPKGVYAKDIILHLIATYGVAFGTGYAVEYYGETIRNMSMEERMTI
                     CNMAIEGGAKMGMMAPDETTFEYVRGREYAPADMDKAISDWKTLQTDPDAEYDLHIKM
                     DASILEPYVTWGTNPEMGVPFSKAFPEIKDMNYERAYEYMGLKPGQTAEEIELGYVFI
                     GSCTNARLSDLEEAARIVKGNKVKNNIRALVVPGSRQVRNAAESIGLDKIFIEAGFEW
                     REPGCSMCLGMNPDQVPDGVHCASTSNRNFEGRQGKGARTHLVSPAMAAAAAINGHFI
                     DIRKEAVISGGN"
     gene            9714..10295
                     /gene="leuD"
                     /locus_tag="IBJ56_001630"
     CDS             9714..10295
                     /gene="leuD"
                     /locus_tag="IBJ56_001630"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HAM3417884.1"
                     /translation="MEEIKVHIGKTVALMNDNIDTDQIIPKSFLKRIERTGFGEFLFD
                     SWRYLPNRKPNPDFPLNAPDRQEATILITGDNFGCGSSREHAAWALLDYRFRVIIAGS
                     YSDIFYMNCTKNGVLPIVLPREAREKLAKIAADENVTIDLPNQQVISSVGTYPFEIDA
                     TWKNKFINGLDDIAITFEHIDAIKAYEQKVDSI"
     gene            10314..11582
                     /gene="ilvA"
                     /locus_tag="IBJ56_001631"
     CDS             10314..11582
                     /gene="ilvA"
                     /locus_tag="IBJ56_001631"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HAM3417885.1"
                     /translation="MELVDLLVTEEDVEKAYEVLKAVVKHTPLEYDFYLSEKYHCNVY
                     LKREDLQRVRSFKLRGAFYAISRLSAEQLEKGVVCASAGNHAQGVAYTCKRMTVPATI
                     FMPTTTPQQKVSQVKFFGGSNVEVVLVGDTFDASATAAKEFAATHGQTFIPPFDDPDI
                     IAGQGSLAVEMVKDLNKAHEQADYVFAGIGGGGLISGVATYLKAKSPITKIIGVEPDG
                     APSMTAALKQNQVVTLDKIDKFVDGAAVKEVGGLTFQHAKVLVDEVTTVSEGAVCSTI
                     LDMYTKQAIVAEPAGALSVAALEIYREEIKDKTVVCIVSGGNNDINRMQEIEERSLLH
                     EGLKHYFIVNFSQRPGALKEFVNDVLGPHDDITKFEYTKKVNRGNGPVIIGVLLQDKN
                     DYEGLLERVAAFDPSYIPINDNQTLYTLLV"
BASE COUNT         3571 a         2296 c         2539 g         3215 t
ORIGIN      
        1 aaactattct gactatatac ttgacctttc atttttgaat gcgcttccat ttaagttata
       61 cttcaaatat aagacctggt actaatttca gctaaaagtg taagttgctt gaattgtgca
      121 aactgacgga aaactttcaa aataacaatt gacaatcgca tggcaaccat atatattaaa
      181 tactaacata acatttcttg atattaattt ttttcaaaaa tgtgcgacta atcgaaaaaa
      241 taaaaccatt taacgaaggg gataatgact tatgaaaacg accaaatcag tcattacaat
      301 tttattactc tagaaggact ttgagcactg tagaaattta cagtagtttg agtcctgttt
      361 acgttaaatg ggattctagc aaagcatccc attgttttca tcattggggt gctttttctt
      421 tagctagatt tcgagttttc aagcatcgaa aagccattat caagcaagca gctacttaat
      481 catatatatt aatgccacgc tatttagtga attctaaaaa ttcagtgtcg gcaaataatt
      541 cttaattaga aatggggtaa agtcatatgc gtagtgacaa aataaaaaaa ggtgtcgaac
      601 aagctccagc aagaagtttg ctgcatgcta caggtcaaat taaaagtcca ggtgatatgg
      661 ataaaccatt tatcgctatt tgtaactctt acattgatat cgttcctggt catgttcatt
      721 tgcgagaatt agcggatgtg gctaaagaag ctattagaga agctggcggt atcccatttg
      781 aatttaatac gattggtgta gatgacggca ttgcgatggg acatatcggt atgcgctatt
      841 cccttccctc tcgtgaagtt atcgcggatg cagcggaaac ggtaatcaat gcgcactggt
      901 ttgatggggt tttctacatc ccaaactgtg acaaaatcac gcctggaatg cttctcgctt
      961 ctgttcgtac aaatgtacct gctatcttct gttctggtgg cccaatgaaa gctggattat
     1021 ctgcacacgg aaaagcactc actctctctt ctgtttttga agcggttggc gcatttaaag
     1081 atggcagcat gtcgcaggaa gattttcttg atatggaagc taatgcgtgt ccgacttgcg
     1141 gatcttgcgc aggaatgttt acagcaaact caatgaattg tttgatggaa atcctaggta
     1201 tggctgttcc gggaaatggt acaacacttg ctgtttctga cgcacgccgt gatcttatta
     1261 gagaatctgc ttttcattta atggatttag ttaaaaaaga tattcgtcct cgtgacatta
     1321 ttacaaaaga tgcgattgac gatgcttttg cgctagatat ggcaatgggt ggttcgacaa
     1381 ataccgtatt acatacactt gcacttgcaa acgaagctgg tattgaagat tatgatttgg
     1441 aacgtatcaa tgatattgct aaacgtgttc cctacctttc caaaattgca ccatcctctt
     1501 cttactcaat gcatgatgtt cacgaagctg gcggtgtttc agccattgtt aaagaactgg
     1561 ttgatctagg tggcgcaata catccagaca gaatcactgt tactggtaaa acgattcgcg
     1621 aaaacgtagc tgatgcaaaa attaataata ccgatgttat tcatccaaaa gaaaatccgt
     1681 acagcccagt tggcggactt tcgatgttgt ttggtaacat cgcaccaaaa ggagctgcta
     1741 tcaaagttgg tggcgtagat ccttccgtac aagttttcaa aggagaagcg atttgcttta
     1801 gttctcatga tgaggcggtg gaagcaattg ataaccatac cgtccgcgag gggcatgtcg
     1861 tggtcattcg ctacgaaggt cctaaaggcg gtccgggaat gcctgaaatg cttgcgccaa
     1921 catctagtat tgttggtcga ggtttaggaa aagatgttgc tttgattaca gatggtcgct
     1981 tttctggggc tactcgtggt atcgcagttg gccacatttc tccagaagct gcagctggtg
     2041 gtcctatcgc ccttgttcat gacggcgata tcatcacgat tgatttgcca aaccggacgt
     2101 taaacgtgga tgtttctgat gaggttttgg aagaacgaag aaaagaatta ccgaaattta
     2161 aagctaaagt aaaaactggt taccttgcaa gatatactgc gcttgtaact agcgcccaca
     2221 ctggtggcat tttgcaaatt ccagaagatt taatcgacta aaaaatgagg tgataagcgt
     2281 gattgatacg acgaagacaa atgaaaaagc gacaaaaaag caaaataaaa gtggtgcgga
     2341 acttttaatt gactccttga aaaagcaaca agtcgagatg atttttggct atccgggtgg
     2401 tgcggttctc cctctctacg atgcttttta cgactgtgat attccgcata ttctaacaag
     2461 acacgagcaa ggagcgattc atgctgcgga aggttatgca cgtgttactg ggaaacccgg
     2521 tgtggtagtt gtaacaagtg gacctggggc gacaaatgta ttaactggta ttgcggatgc
     2581 aatgagtgat tcgattccat tagtgatttt caccggacaa gttcatacgc ctggtatcgg
     2641 aaaagatgcc ttccaagaag cagatatgat tgggctaacc attccaatta ctaaatataa
     2701 ttaccaagtg cgtgatgttc gtgacttacc aaaaattgtc aatgaagctt ttcatattgc
     2761 aagcactggt cgtaaaggtc ctgttgtcgt ggatattcca aaagacatgg ggattatcca
     2821 aacagagtct gtacgaccag atacgattga tctgccgggt tatcaaccga cttattcacc
     2881 gaacccactt caactggaaa aactaatgca atctctttct gccgcaagca agccactaat
     2941 acttgccgga gctggcgtca atcatgcgag agctacagct gaattactag aattcgctga
     3001 acgctatcaa attccaatcg tgaatacgct gcttggtcta ggaagtttcc cgcaaagtca
     3061 tgatttattc cttggtatgg gcggcatgca cggttcatac gcggcaaaca tggcacttac
     3121 agattgcgat ttgctcatta attttggttc ccgcttcgac gacaggcttg ccagtgcgcc
     3181 aaaagaattt gccacaaaag caacgattgc acatatcgat attgatcctg ctgaaattgg
     3241 caaaattatc gaaacacaaa ttccgattgt agctgatatt aacgaaacac ttacacaact
     3301 actacaaatg gaacttccgg ttcatccgga tacatcccat tggtacaaat taaatatgac
     3361 ccgtaaaaac cgtcatcctt ttaattttga tagaacgaaa aaagcagaaa ttaaaccaca
     3421 gcgtgtgatt gagctaattg gtgaaattac gcaaggtgaa gcgcttgttt ctaccgatgt
     3481 tggccagcat caaatgtggg cggcacagtt ttatccattc caatttgatc atcaaattat
     3541 tacgagtggc gggcttggca caatgggctt tggctttcca gcagctgttg gtgcgcaact
     3601 tgctttccca gataaaacgg tagtcgccat tgttggggac ggtggtttcc aaatgactaa
     3661 tcaagaactg gcgattttaa atgattacca aatcaatgtg aaaacggtca ttatcaataa
     3721 cggttcgctc ggcatggttc gtcagtggca agaaaaattc cacggcgaaa gatattctca
     3781 ttcgattttc acgagccaac cagattttgt taaactatcc gaagcttatg gtgtcaaagg
     3841 ggttcgcttg acgaatcctg aaacgctaga aaaagatcta agaaaagcct tcgctcaccc
     3901 tggaccgatt gtcattgacg ttcatgtgtc caaagatgag ctagtacttc caatggttcc
     3961 aagcggcaaa ccaaatcacc aaatggaagg agtggaataa atgcgccgaa tcattaccgc
     4021 tacagtaaac aactcttctg gcgtgttaaa tcgtatcact ggggttatct ccagacgcca
     4081 atacaatatt gatagcatct ctgtcggctg gaccgaaatc ccaaatgttt ctcggattac
     4141 catcgtcgtc catgtcgatt ccttatacga aatcgagcaa gtaactaaac aactcaataa
     4201 acaaatcgat gtgctcaaag tgagcgatat tactgacgat gcacacatcg aacgcgaact
     4261 agctttactt aaaatcaact cccccgctgc cttacgatct gagctaaacg cagtcatcga
     4321 accatttcgc gccactgtta ttgatgtcgg cacgaaaaat gtcgtcattc aagtaactgg
     4381 aacaagtgaa aaaatcgatg ctttcgttga cacagttcga ccgtatggta ttaagcaaat
     4441 ggcgaggacc ggcgtcacag gctttacaag aagccctaaa aaaatgggtt aaaaatcatt
     4501 tactacagag cagtctcttg ctttgctagc atcagaacag cacatcgcta ttctgaaata
     4561 taaaaagaaa ttagttggag gttaggaaaa atgacaaaag tttattatga agatgcagta
     4621 aaaaacaacg cactagaagg taaaacagta gcagtaatcg ggtacggttc gcaaggtcac
     4681 gcacattctc aaaatctacg tgacaatggc aataacgtta ttatcggcat tcgcgaagga
     4741 aaatctgccg aatctgctag aaacgatggc tttgatgttt attctgttag cgaagccgct
     4801 gaaaaagcag acgttatcat gattcttttg ccagatgaaa cgcaaggtga aacatacgaa
     4861 aacgaaatta aacctaacct aaaagctggc aatgcgcttg ttttcgcaca tggtttcaac
     4921 attcattttg acgtaattaa tcctccaagc gatgtggatg ttttcctagt agctccaaaa
     4981 ggtcctggtc acttagttcg ccgcacattt gttgaaggtg gcgcggttcc ttccctattc
     5041 gctatctatc aagatgccac tggaaacgca cgcgacacag ccctttccta tgcaaaaggt
     5101 attggcgcaa ctcgtgctgg cgttatcgaa accactttca aagaagaaac cgaaaccgat
     5161 ctatttggcg aacaagcagt tctttgtggg ggtgcaactc accttatcca agctggtttt
     5221 gaaacacttg tagaggctgg ctaccaacca gaacttgctt attttgaagt attacacgaa
     5281 atgaaactaa ttgttgattt gatgtatgaa ggcggcatgg aaaaaatgcg ccactcgatc
     5341 tccaatacag cagaatatgg tgattatgtt tccggtcctc gtgttgttac agctgatacg
     5401 aaaaaagcaa tgaaagaagt acttaccgac attcaaaatg gtaactttgc taaatctttc
     5461 atcgacgaca ataaaaatgg ttttaaagaa ttccatagaa tgcgcaaaga acaacaaggt
     5521 catcaaatcg aaaaagttgg tgctgaactt cgtgaaatga tgccgtttgt taaaccacaa
     5581 cattaatact taattcggat tgctaggtga gatttcttgc ctagcaaccg tttatccttt
     5641 ttcaatatga gtttaaggaa gaacctcttt ctttcctaaa ctgatactga aagcaggaaa
     5701 aatccaagct tccctatcta atataaaaca agaggtgaaa tcgaatgaag aaaatccagt
     5761 tttttgatac tacacttaga gatggcgaac aaacccctgg agttaatttt gacgtaaagg
     5821 agaaaatcca gattgcctta caactcgaaa aacttggaat tgatgtaatt gaagccggct
     5881 ttccgatttc ttctcctgga gattttgaat gcgtcaaggc gattgcaaaa gcgattaaac
     5941 attgttctgt aacagggcta gcgcgctgtg ttgaaggaga tattgaccgt gccgaggaag
     6001 cgctaaaaga cgctgtttct ccgcaaatac atatcttcct tgcaacgagc gatgtgcata
     6061 tggaatacaa attaaaaatg agtcgggcgg aagttcttgc ttccattaaa caccacatta
     6121 gttatgcgag acaaaaattt gatgttgtac agttttcacc agaagatgca actcggtcag
     6181 atcgtgcttt tctgattgaa gcagttcaaa cagcgattga tgcaggagca actgtcatca
     6241 acattccaga tacggtcgga tatacaaacc ccaccgaatt tgggcaatta ttccaagatt
     6301 tgcgccgcga aataaagcaa tttgatgata ttattttcgc ttctcattgc catgatgacc
     6361 ttggtatggc gacagcaaac gcacttgctg caatcgaaaa tggcgcaagt cgcgtcgaag
     6421 gtacgattaa tgggattggt gagcgtgctg ggaatacggc actggaagaa gttgcggtag
     6481 cgcttcatat tcgcaaagat ttttatcaag ctgaaacaaa cattgtattg aatcaattta
     6541 aaaattcaag tgatttgatt agccgcttgt ctggtatgcc tgttccacgt aacaaagctg
     6601 taattggtgg caatgcttac gcgcatgaat ctggtattca tcaagatggt gtcctaaaaa
     6661 atcctgatac gtatgaaatc atcacccctg ctcttgtcgg cgtggataaa aactctcttc
     6721 cacttggcaa actttctggc aaacatgcct tcaatacgcg catggaagaa atgggctaca
     6781 cactaaccga acaagaacaa aaagatgcct ttaaacgttt caaacaatta gcagatgcga
     6841 aaaaagaagt aacagaagaa gacttgcacg cgttaattct cggacaatct tccgaatcag
     6901 ccgatgattt cgaactaaaa catttgcaag ttcaatatgt tactggcggc gtccaaggtg
     6961 cgattgttcg cattgaagaa cgtgatggcg ctctagtaga agacgcagca actggttcag
     7021 gtagcattga agcgatttat aatacgatta accgtcttat gaaacaagat attgaattaa
     7081 ccgattatcg tatccaagca attacagccg gtcaagattc ccaagcagaa gtccatgtcg
     7141 tcattaaaaa tgacaaaggc gctgtgttcc atggtatcgg tattgatttt gacgttttaa
     7201 ctgctagtgc taaagcttat ttgcaagcat caggcaaaag caaaaccgcc agtaagcaag
     7261 ctgatttcga ggaggtaaaa taacgtgacc tataaaatta cttccttagc tggcgacgga
     7321 attggtccag aaattatgac ttctggactt caagtattag aggcagtcgc aaaaaaatac
     7381 aaccatacgt ttgaaattga atctcatccc tttggcggcg caggaattga cgtagcacaa
     7441 gacccaatcc cttcttccac cttaaaagcg tgccgagacg ccgacgccat tttactcgga
     7501 gcaattggtg gtccaaaatg ggataatgcg ccgaaacgtc ccgaagatgg cctacttgca
     7561 cttcgaaaag cgcttggtct tttcgccaac attcgaccta tccaagtccc aagctccatc
     7621 acccaccttt ctcctttaaa aaaggaaatt gttgagaaca ctgattttgt cgttgttcgt
     7681 gaattgactg gtggacttta tttcggagaa ccgaaatatt gggataatga ggcagcagtg
     7741 gattcattaa catatacccg tgcagaaatc gagcgaatta tcgagaaagc tttcgaaatc
     7801 gccgctacta ggaataaaaa agttacttca gtagataaag cgaatgtgct tgcttctagt
     7861 aaattatggc gaaaaatcgc tgatgaagtc gcaagtcgtc atccagatat cacactagaa
     7921 catctatacg tcgacgctgc cgcaatgctt atgattcagc gaccaacgac ctttgatgtt
     7981 atcgtgacag aaaacttatt tggcgatatt ttaagtgatg aagcgtctgt tattactggc
     8041 tcgcttggaa tgctcccttc tgctagccac gcggaaaacg gaccatcttt atacgaacca
     8101 attcacggat ctgcgccaga tatcgctaac caaaatatcg cgaatccaat gtcgatgata
     8161 tcctctgtat ccatgatgct tcgtcaatct ttctctcttt ttgaagaagc agatgcgatt
     8221 gatgcagcta cagcaagaac gatgcaagct ggatttttaa ctgctgacct tggaggcaat
     8281 acttccacaa ctgattttac aaatgaagtt ctaaaacaaa ttgaaggagg agaataaaat
     8341 ggggaaaaca ctttttgata aactttggaa ccgccatgtc atttatggta aagaaggtga
     8401 accgcaatta ttatacgttg accttcattt gattcatgaa gttacttctc ctcaagcgtt
     8461 tgaaggactt agaatggaaa atcggccact gcgtagacca gataaaacgt tcgcgacaat
     8521 ggatcataac gttccaactg aagatatttt caacattcaa gaccttgttg ctaaaaaaca
     8581 aatcgaagca ctgcaaacca attgcgagga atttggcgtg acgctagctg atatgggtag
     8641 tgatcgccaa ggaatcgtgc atatggttgg accagaaact gggctaacac aacctggaaa
     8701 agtcattgta tgtggagatt cgcatactgc aactcatgga gcatttggag caattggctt
     8761 tgggattggt tctagtgaag tagagcatgt ttttgcgact caaaccattt ggcaacaaaa
     8821 gccaaaatca atgggcatag aaattaacgg caatcttcca aaaggtgtct atgcaaaaga
     8881 tattattttg catctgattg ccacgtatgg cgtcgctttt ggaactggct atgccgttga
     8941 gtattacggc gaaactattc gcaatatgtc gatggaagaa cggatgacga tttgtaatat
     9001 ggcaattgaa ggtggcgcaa agatgggcat gatggcgcca gatgaaacta cttttgaata
     9061 tgtgcgcggt cgtgaatacg ctcccgctga tatggataaa gcaattagtg actggaaaac
     9121 gctccaaaca gatccagatg ccgaatatga ccttcatatc aaaatggatg cgagcatttt
     9181 ggaaccgtat gtcacttggg gaacgaatcc cgaaatggga gtgccatttt ctaaagcatt
     9241 tccggaaatt aaagatatga actatgagcg tgcttatgaa tatatggggc taaaacctgg
     9301 tcaaactgca gaagaaatcg agcttggcta tgtgtttatt ggttcttgta caaatgccag
     9361 actttctgac ttagaagaag ctgctcgtat cgtcaaagga aataaagtga aaaataatat
     9421 tcgcgcactc gtggtccctg gttctcgcca agtgcgtaat gcggcagaat ctatcggact
     9481 agataaaatt tttatagaag ctggctttga gtggcgtgaa cctggttgtt cgatgtgtct
     9541 aggaatgaac cctgatcaag taccagacgg cgttcactgt gcttctactt cgaaccgaaa
     9601 ttttgaaggt cgtcaaggta aaggcgctcg tactcatctt gtttcaccag caatggctgc
     9661 tgctgcggca attaacgggc actttatcga tattcgaaag gaggcggtta tcagtggagg
     9721 aaattaaagt acacattgga aaaacagtag cgctaatgaa tgacaatatt gataccgacc
     9781 aaatcattcc aaaaagtttc ttaaaacgca ttgaacgtac tggctttggc gaatttctct
     9841 ttgatagttg gcgctacctg ccgaaccgta aaccaaaccc agacttcccg ctcaatgctc
     9901 cagatcgtca ggaagcgact attttaatta cgggagataa ctttggttgc gggtcctcta
     9961 gagaacatgc tgcgtgggca ctactcgact accgtttccg tgtaattatc gctggcagtt
    10021 atagtgatat attttatatg aattgtacaa aaaacggcgt gctccctatc gttcttccta
    10081 gagaggcgcg tgaaaaatta gcgaaaattg cagccgatga aaatgtgacc attgacttgc
    10141 caaatcaaca agttatcagt tcagttggta cctacccgtt tgagattgat gctacttgga
    10201 aaaataaatt tattaatgga ctggatgata tcgccattac atttgaacat attgatgcga
    10261 ttaaagccta tgaacaaaaa gtggattcaa tataagaaaa ggtagtgagg atgatggaat
    10321 tagttgattt attagtaaca gaagaagatg tcgaaaaggc ctatgaagtc ttaaaggcgg
    10381 tcgtcaaaca tacgccacta gaatatgatt tttatctttc ggaaaaatat cattgcaatg
    10441 tctatctgaa acgcgaagat ttgcaaagag tgcgttcttt taaattacgt ggtgcttttt
    10501 atgctatttc tagattatca gcggaacaat tggaaaaagg tgtggtatgt gcaagtgcgg
    10561 gaaaccatgc gcaaggagtt gcatatacgt gcaaacgaat gaccgtccca gctacgattt
    10621 ttatgccaac aactaccccg caacaaaaag tatcacaagt aaaatttttc ggtggtagta
    10681 atgtcgaagt ggttttagtt ggcgatacgt ttgatgcttc tgcaactgcc gcgaaagaat
    10741 ttgctgcaac acatggccaa actttcatcc ctccgtttga tgatcctgat attatcgctg
    10801 gccaaggctc tcttgctgtg gagatggtga aagatttaaa taaagcacat gagcaagcag
    10861 attatgtttt tgcaggaatc ggtggtggtg gcttaattag cggtgttgca acgtatctca
    10921 aagcaaagag cccgattaca aaaatcatcg gggtagaacc tgatggcgcg ccttcaatga
    10981 cagcagcttt aaaacaaaat caagtcgtaa cactagataa aatcgataaa tttgttgatg
    11041 gcgctgcggt aaaagaagtt ggtggcttaa cgttccaaca tgcgaaagta ttagttgatg
    11101 aagtgacaac cgtctctgag ggagctgttt gttctacgat tttggatatg tatacgaagc
    11161 aagcaattgt tgcagaacct gctggagcac tatccgttgc cgcacttgaa atttaccgtg
    11221 aagagattaa agacaagacc gttgtctgta ttgtaagtgg cggaaacaac gacatcaacc
    11281 ggatgcaaga aattgaagag cgttccctct tacacgaagg attaaaacat tattttatcg
    11341 tcaatttctc gcagcgtcct ggggctttga aagaatttgt taacgatgtg ctcggtccac
    11401 atgacgatat caccaaattc gaatatacga aaaaagtgaa tcgaggtaat gggcctgtaa
    11461 ttatcggtgt tttgttgcaa gataaaaatg attatgaagg attgcttgag cgggttgctg
    11521 cttttgaccc gagctatatt ccgattaatg ataatcaaac cctatacaca ttacttgtat
    11581 aaaaagagtt ctcgtatgat gcgagaactc tttttatatt a
//
LOCUS       DABQVC010000088        11519 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.088,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000088 DABQVC010000000
VERSION     DABQVC010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11519
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.088"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..543
                     /locus_tag="IBJ56_001632"
     CDS             <1..543
                     /locus_tag="IBJ56_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HAM3417886.1"
                     /translation="AERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFYP
                     MDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGRLNYP
                     LAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVLQ
                     ALQTGGLCPINWQPGEKTIV"
     gene            complement(584..1696)
                     /locus_tag="IBJ56_001633"
     CDS             complement(584..1696)
                     /locus_tag="IBJ56_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HAM3417887.1"
                     /translation="MRDARIEKLAHNLINYSVKLGAGEKVLIENFGVQKELVMALVEE
                     AYKAGGFPFVSLKEPQIDRAMMLGADSSQYAKIAEFEGNVMKEMDAYIGLRAGDNINE
                     TSDVPADKLKIHGETVGKMHSDIRVKQTKWVVLRYPSSSMAQLAKMSTAGFEDFYFDV
                     CNLDYGKMSDAMDGLVELMNKTDKVHLVGPGTDLTFSIKDIPAIKCAGEMNIPDGEVF
                     TAPVRDSINGTLTYNTPSPYQGFTFENVSFTFKDGKIIEATANDTARINKVLDTDEGA
                     RFVGEFAIGVNPFIHEPMQDILFDEKIEGSFHFTPGQCYDEAFNGNQSAIHWDLVNIQ
                     RADYGGGEIYFDDVLIRKDGIFVLPELEALNPENLV"
     gene            1952..2407
                     /locus_tag="IBJ56_001634"
     CDS             1952..2407
                     /locus_tag="IBJ56_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HAM3417888.1"
                     /translation="MIVILYIAALIAAIALLVIAIYLGKTLKSTSQTMDEVAKSLEKI
                     TVEVQGITGQSQKLLDKTNTLLEDVNGKVAKVDPVFDAVGDIGTSLLGLSQSVRELAT
                     LATNKVEQNEAKISQAVSISNSILSFREKMKANKAAKEAAKEAAEQSNF"
     gene            2429..2953
                     /locus_tag="IBJ56_001635"
     CDS             2429..2953
                     /locus_tag="IBJ56_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HAM3417889.1"
                     /translation="MAEKDGINTKDFLIGGLIGAIVGSAAALLFAPKSGKELREDLNT
                     QVDTIKEKGNQWKDVAYEKGIEISGVAKGTKDKLVDSAGGFVDVVKDKSGKLADTVSK
                     QSKAVKEVVSQNKEENQEAAKQAADAVKNEAKDAADDVEKAADKAKKEAKKAVDEGKD
                     EAKKIASDVKKEVK"
     gene            3173..4258
                     /gene="aroF"
                     /locus_tag="IBJ56_001636"
     CDS             3173..4258
                     /gene="aroF"
                     /locus_tag="IBJ56_001636"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HAM3417890.1"
                     /translation="MVNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSL
                     RFDPLREREMLNTILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKK
                     EDTIVTVKGLPIGNGEPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSP
                     YDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELL
                     KAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDI
                     SAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDS
                     AQQMDIPEFEEFWNAILASNLVPHKIK"
     gene            4493..5500
                     /gene="ccpA"
                     /locus_tag="IBJ56_001637"
     CDS             4493..5500
                     /gene="ccpA"
                     /locus_tag="IBJ56_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HAM3417891.1"
                     /translation="MNVTIYDVAREANVSMATVSRVVNGNPNVKPVTRKKVLDVINQL
                     GYRPNAVARGLASKRTTTVGVIIPDISNVFYAELARGIEDIATMYKYNIILSNSDENE
                     DKELQVLNTLLGKQVDGIIYMGERISEQLQEEFDRSPAPVVLAGAVDMENKFASVNID
                     YKQATKEAVKRFVDNGHKQIAFVSGSLNEPVNREMKLAGYKEALEEAGISYQEDYIIE
                     AKYNYNAGVKVWAELSALSKKPNAVVVADDELAIGILNAALDAGIKVPEDLEVMTSNN
                     TKLTLMSRPQLSTIVQPLYDIGAVAMRLLTKLMTSEEVDEKTVILPHSEKLRGTTKEK
                     K"
     gene            5822..7081
                     /locus_tag="IBJ56_001638"
     CDS             5822..7081
                     /locus_tag="IBJ56_001638"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HAM3417892.1"
                     /translation="MNIIDELEWRGAIYQQTDEEGLRKWVEEKQISLYCGIDPSGDSM
                     HIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLR
                     VQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRLEVG
                     ISFTEFAYQILQAMDFNHLYEFNDCRLQIGGSDQWGNITAGLDLIRKKQGENAKAFGL
                     TIPLLTKADGTKFGKSEGGAIWLNPEKTTPYEFYQFWINTDDRDVVKYLKYFTFLTEA
                     EIDELAKQVETEPHLRAAQKTLAAEMTKFVHSEEALEQALKISKALFSGDVKALTADE
                     IEQGFKDVPTFVAEDTEANLVDWLVTLGIEPSKRQAREDVANGAIYINGERQQDLEKI
                     MDASDRIENKFTIVRRGKKKYFLVSYK"
     gene            complement(7181..7783)
                     /gene="rpsD"
                     /locus_tag="IBJ56_001639"
     CDS             complement(7181..7783)
                     /gene="rpsD"
                     /locus_tag="IBJ56_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HAM3417893.1"
                     /translation="MARYTGPSWKVSRRLGISLSGTGKELERRPYAPGQHGPTQRKKI
                     SEYGLQQAEKQKLRHMYGLTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLG
                     LARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF
                     VPEYVTFDAEKLTGSLNRLPERSELAAEINEAFIVEFYSR"
     gene            complement(7995..8483)
                     /locus_tag="IBJ56_001640"
     CDS             complement(7995..8483)
                     /locus_tag="IBJ56_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HAM3417894.1"
                     /translation="MIEIKKMTGTKEENYALALKQVQAMIAGEPNLIANLSNVSSILN
                     QALSDINWVGFYLLEKETNQLVLGPFQGLPACIRIPLGKGVCGSAASDQKTYIIENVH
                     DFPGHIACDAASNSEIVLPIVKNNQLLGVLDIDSPLFNRFDEVDQLWLEKIRDAITQE
                     IN"
     gene            8777..10492
                     /gene="ezrA"
                     /locus_tag="IBJ56_001641"
     CDS             8777..10492
                     /gene="ezrA"
                     /locus_tag="IBJ56_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HAM3417895.1"
                     /translation="MYYMLIGFIIVVIAVIGAGYILKRKHYQRINELEEKKIKLRERP
                     VIDELSKVKKLKLTGQTEALFESWRSSWDEIETRLFPDLEEVLLEAEMNTDRYKFRSA
                     THAENDIEQMLVVIEKQMDQILGGLKELLISEEKNAKESRATKEKFAELRREVLTRGF
                     KLGETLPYIETKLSELSESLNSYDSLTDQGDHLEAREIVIVVQKEMQVIEAQMERIPS
                     LLHETDTILPEEMTKLRAGYEEMVRKGYYLAQMELDKEISRMKNQIDKMKKNVINLDL
                     DEAEQGVEELHNEIDLFYDTLEHEAEARHFVKENHSPTSDKLQRQNAVSDALAEQITE
                     VKQTYHVAEDDLAVYLKTSAKLSEAKENFEQLTALIASGEIAYSAAQDTLKEIDAALI
                     TISAEQDKFAEELRSLRKDELEARDDAERMRRAIITLDRKMERERLPGLPEEYLSLRE
                     HMGESINALEKRLEEKPLNMKAVSQNWRIAEEDLTHLTEKAEEMMENVRLVEHVIQYA
                     NRYRLRNKELADELVQAENHFYNDYQYKKALEIAVTALEKVETGAFKKVEKAYESKVS
                     VDDIE"
     gene            10620..>11519
                     /locus_tag="IBJ56_001642"
     CDS             10620..>11519
                     /locus_tag="IBJ56_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HAM3417896.1"
                     /translation="MIYFDNSATTKPNAAVLETYTKVASNYFANPSSLHRFGAKSKEL
                     LDASRKQIAAMVSALPEEIIFTSGGTEGNNLAIKGLVYSYQNRGKHIVTSSIEHPSVR
                     MVMEELEQEGFTVTYLPVDKNGVIKMEALKAALTDETILVSIMGVNNEVGSIQPLHEI
                     GEMLKLLEHTFFHVDFVQGIGKIPLALNENAIDLLTFSGHKFHALRGTGILFKRKNVH
                     LHSEILGGGQEMGYRSGTENLAGNVALAKALRLTLENEPRKEALIEIRDYLLTEIAQM
                     SDMTVHTKQSVAAPHIVCFSAKGH"
BASE COUNT         3900 a         1893 c         2420 g         3306 t
ORIGIN      
        1 gcagaacgtt tagtaggcac acaagctcca agatttgaaa tggaagctgt tatgccaaat
       61 cagacttttg ggaaagtaag tctagaaaaa aatatagaag acgataaatg gacgattctc
      121 tttttctatc caatggactt tacatttgtt tgtccgacag aaattgttgc tatttccgct
      181 cggtcagatg aatttgatgc attaaatgcc cgcataattg gcgcttctac agatacaatt
      241 cactcgcatc ttgcatggac gaatacaccg attaaagaag gtggtattgg tagattaaac
      301 tacccactcg ctgcggatac gaatcatcaa gtagctagtg attacggtgt attaattgag
      361 gaagagggcg tagcattgcg cggtcttttc attatcaatc caaaaggtga aatccagtac
      421 gaagtggtgc accataataa tatcgggcgg gaagtggatg aagttttaag agttttacaa
      481 gctcttcaaa caggtggact gtgcccaatc aactggcaac ccggtgaaaa aacaattgtt
      541 taaactaaaa aacgcttagg aattaatcct aagcgtcttt tttttatact aagttttctg
      601 gattaagtgc ttctaattct ggaaggacga aaataccatc tttacgaatg agaacatcat
      661 caaagtaaat ttcgccgccg ccgtaatcgg cacgttgaat gttaactaaa tcccagtgaa
      721 tagcagattg gttgccatta aaagcttcgt cgtaacattg accaggcgta aagtggaaac
      781 ttccttcgat tttttcatca aaaagaatat cttgcattgg ttcgtgaatg aatgggttaa
      841 ccccaatagc gaattcgcca acgaagcgcg cgccttcatc tgtatctaag actttgttaa
      901 tacgagctgt atcattcgca gtcgcttcga tgatttttcc atccttaaac gtgaaagata
      961 cattttcgaa cgtaaagcct tggtaaggag atggtgtgtt ataagtaagt gttccattga
     1021 tagaatcacg aactggtgca gtaaatactt caccgtcggg gatattcatt tcgccagcac
     1081 atttaattgc cggaatatct ttaatactaa atgttaaatc tgttcctggt ccaactaagt
     1141 gtactttatc tgttttattc attagttcta ctaatccatc cattgcgtca ctcatttttc
     1201 cgtaatctaa gttacacacg tcaaagtaga aatcttcaaa accagcagtg ctcattttgg
     1261 caagttgcgc catggaggaa cttggatagc gaagtacaac ccattttgtt tgtttcacac
     1321 gaatatcaga atgcattttg ccaactgttt ctccgtggat tttcaattta tctgctggga
     1381 catcggatgt ttcattgatg ttatcgccag cacgtaaacc tatgtaagca tccatttctt
     1441 tcatcacgtt gccttcgaat tcagcaattt ttgcatattg ggaactatca gctccgagca
     1501 tcatcgcgcg gtcaatttgt ggttctttta aggaaacgaa cgggaaaccg ccagctttgt
     1561 atgcttcttc tactaaagcc atcactaatt ctttttgaac accgaagttt tcaattaata
     1621 ctttttctcc agcgccaagt ttgacggaat agttaatcaa attatgtgct aatttttcga
     1681 ttcttgcgtc tctcatcttg taacctccct aaattttaac taaaaatagg caaaaagcag
     1741 cctgtatcta ttttactcca aattacgcta aaagcaacct tctacaacaa attaaccggt
     1801 ttctttctta ttagtttatt tttcggcagt tacttgctaa aatgaagcta ataccttttc
     1861 ttttttgtat tttgtacata gatcattaga gaagaaagtt ttagagggga atactcaggg
     1921 tatagaaaaa ggaatatgga ggtgtggata gatgatagta atcttgtata ttgcagcgct
     1981 tattgccgca attgcgcttt tagttattgc catctacttg ggaaaaacgt taaaatcaac
     2041 ttcccaaaca atggatgagg tagctaaatc gttagaaaaa ataacagtag aagtacaagg
     2101 gattacagga caatcacaaa aattgcttga taagaccaat acacttctag aagatgtaaa
     2161 tggcaaagtt gcgaaagtgg atccagtttt tgatgcagtt ggtgacattg ggacttcttt
     2221 actaggatta agtcaatctg ttcgcgaact agcaacactc gcaacaaaca aagtagagca
     2281 aaacgaagcg aagatttctc aagctgtctc aattagcaat tcaattcttt cttttagaga
     2341 aaagatgaaa gcaaataaag cagcgaaaga agcagcaaaa gaagcagcag aacaatctaa
     2401 tttctaatat aatttggagg gatttaacat ggcagaaaaa gatggtatta atacaaaaga
     2461 ttttctaatc ggtggtttaa ttggtgcaat cgttggttca gccgcagcac ttctatttgc
     2521 acctaaatca ggtaaagaac tacgcgagga cttaaataca caagttgata caattaaaga
     2581 aaaaggcaac caatggaaag atgttgctta tgaaaaaggt atcgaaatca gtggtgtagc
     2641 caaaggaaca aaagataaat tagttgattc tgctggtgga tttgtagatg tagtgaaaga
     2701 caaatccggt aaattagcag atactgtttc taaacaaagc aaagccgtga aagaagttgt
     2761 ttcacaaaac aaagaagaaa accaagaagc tgcgaaacaa gcggcagacg ctgtgaaaaa
     2821 tgaagcaaaa gacgctgcgg acgatgtaga aaaagcagct gacaaagcga aaaaagaagc
     2881 aaaaaaagca gtagatgaag gcaaagacga agcgaaaaaa attgcttctg acgtaaaaaa
     2941 agaagtaaaa taaacttagt tcaaaaaaca gccttacggg gctgtttttt tattaggaaa
     3001 aaatacatta tctgcttgta atttgattta aaacatgtta acattagttt tacattattc
     3061 actttaatgc ttaaaagcga ttaagtataa aagtggattc gtgacaaatt atctgttttc
     3121 ctctataatg agaaataatc ttggagcaga tttttagaag ggtggaagtt aaatggttaa
     3181 tacaaattta gaggaactta gaacacaggt ggatcaatta aatattgatt tgctagaatt
     3241 aattagcaaa cgcgctaatt tggtacaaga aattggcaaa attaaaggaa ctcaaggttc
     3301 tcttcgtttt gatccattac gtgaaagaga aatgcttaac acgattcttg cagcaaatga
     3361 aggacctttt gaagatagta cggttcaaaa attatttaaa gaaattttta aagcgggatt
     3421 agagcttcaa gaagaagatc actctaaagc attactcgtt tctagaaaaa acaaaaaaga
     3481 agatacgata gttacagtaa aaggattgcc aatcgggaat ggcgaaccag tatttgtttt
     3541 cggtccatgt tcagtggaat cttatgaaca ggttgctgcg gtcgctgaat ccattaaagc
     3601 gaaaggctta aaacttattc gtggcggcgc atttaaacct cgtactagcc catatgactt
     3661 ccaaggatta ggtttagaag gactgaaaat tttaaaacgt gtatctgatg aatacggttt
     3721 aggtgttatt agtgaaatcg ttacgccggc tgatattgaa gttgcacttg attatgtaga
     3781 tgttattcaa attggtgcaa gaaacatgca aaacttcgaa ttactaaaag cggctggccg
     3841 tgtggacaaa cccattttac taaaacgtgg tttatctgct acaatcgaag aattcattgg
     3901 tgctgctgaa tatatcatgt cacaaggaaa tggcaaaatc atcttatgcg aacgaggtat
     3961 ccgcacatat gaaaaagcga caagaaatac acttgatatt tctgccgttc caattttgaa
     4021 aaaagaaact catttaccag ttatggttga tgtgacgcat tctactggtc gaaaagattt
     4081 attacttcca tgcgcaaaag ctgctctagc tatcgaggca gatggcgtga tggctgaagt
     4141 tcatccagat cctgcagttg cattatcgga ttctgcacaa caaatggata ttcctgaatt
     4201 tgaagaattc tggaatgcaa ttttagcaag taatttagta ccacataaaa taaagtaaca
     4261 tcaaaaaacc ttgggattcc aaggtttttt gttttgctat taacaactca tattctatcg
     4321 gcatttaatt ttgtgtaata atgccgtttt gatatgaaaa taaatgaaaa taaagagtaa
     4381 aaacaattgc atatcgaaaa aagttatcgt attattaaag gaaggctagt ttgtttacgt
     4441 ttacaatggt aggtagagcc attaaaataa tgaatatgga gagtgaatag agatgaatgt
     4501 aacaatttat gatgttgcaa gagaagcgaa tgtttctatg gcaacggtat ctcgggtagt
     4561 gaacggcaat ccgaatgtta aaccagtaac aagaaaaaaa gtactagatg ttattaatca
     4621 attagggtat cgtcctaatg ctgtagctag aggcctagcg agcaaacgta caactacagt
     4681 tggtgttatt attccagata tttctaacgt gttttatgca gagcttgctc gtgggattga
     4741 agatattgcg acaatgtata aatacaacat tatcctcagc aattcggacg aaaatgagga
     4801 taaagaactt caagtactta acacgcttct tggtaaacaa gtggacggaa ttatttacat
     4861 gggcgaacgt atttcagaac aattacaaga agaatttgac cgttctccag cgccagtagt
     4921 tttagcagga gccgttgata tggaaaataa atttgcttct gtaaacatcg attacaaaca
     4981 agcaacaaaa gaagcggtga aacgttttgt agataatggt cataagcaaa tcgcttttgt
     5041 aagtggttct ctaaacgagc cggtcaatcg cgaaatgaaa ttagctggtt acaaagaagc
     5101 attagaagaa gctggaattt cttatcaaga agactacatt attgaagcga aatataacta
     5161 caatgcaggt gtaaaagttt gggcagaatt aagtgccttg tctaaaaaac caaatgcagt
     5221 ggtagttgca gatgatgaac tagctattgg tattttgaat gccgcgcttg atgctggaat
     5281 caaagtccca gaagacttag aagtaatgac aagcaacaat acgaaattaa cattaatgtc
     5341 acgcccgcaa ctttcgacaa tcgtacaacc tttatacgat atcggcgccg tggctatgcg
     5401 tctactaaca aagttgatga cgagtgaaga agtagatgaa aaaacagtta tcttaccaca
     5461 tagtgaaaaa ctacgtggta cgactaaaga aaaaaaataa gttgacagca tttttaacgg
     5521 tatgttataa atgtatgtat acttttcata acgaaaatga ctatgaacgg acgaagtagt
     5581 tgcttattct tattcctaga gagctagtgg ttggtggaaa ctagtagagg taagtagacg
     5641 aattacatcc cggagtcacg ctgcgcagga taatggcgca gccggtgttg agccgttatt
     5701 ttttgaagta ggatttattc ctaaaagtag ggtggtacca cgttaattaa tacgtccctt
     5761 cgctaaactg tttagcggag gggcgttttt tatgtccaaa aataaaagga gaatgatgaa
     5821 aatgaatatt attgatgaat tagagtggcg cggagctatt taccagcaaa cagatgaaga
     5881 aggattacgc aaatgggtag aagaaaaaca gatttctttg tactgcggga ttgatccatc
     5941 tggagactcg atgcatattg gtcatttaat tccattcatg attttacgcc gtttccaaaa
     6001 cgctgggcac cgtccgatta ttttagttgg tggagcgaca ggaactattg gcgatccgag
     6061 tggtaaaaag gaagagcgta agttacaatc aatggaacaa attagtaaaa atgtggaaag
     6121 tttgcgcgtg caacttggaa agatttttga ttttgaaggt aattctgcgg cgagcatggt
     6181 gaacaactat gattggacaa aagatgtgag tatccttgat ttcttgcgtg actatggaaa
     6241 agaattcaac gtgaacacga tgctttcaaa agatatcgtt gctagtcgtt tagaagtagg
     6301 gatttcattc acggagttcg cttaccaaat tttacaagcg atggacttta atcacttata
     6361 tgaatttaat gattgccgtt tgcaaattgg tggtagtgac cagtggggga atattactgc
     6421 tggacttgat ttgattcgta aaaaacaagg cgaaaatgcc aaagctttcg gtttaacaat
     6481 tcctctttta acaaaagctg atggaacgaa atttgggaaa tcagaaggcg gggcaatttg
     6541 gttaaatcca gaaaaaacaa cgccatatga gttttatcaa ttctggatta acacagatga
     6601 tcgtgatgtt gtgaaatacc tgaagtactt tacattccta acagaagcag aaattgatga
     6661 gttagcaaaa caagtagaaa cagaaccgca tttacgagct gcacaaaaaa cgttagcggc
     6721 agaaatgacc aaatttgtgc atagtgaaga agcgttggaa caagcactta aaatttcaaa
     6781 agcactattt agtggtgatg taaaagcgct gactgcggat gaaattgaac aaggcttcaa
     6841 agacgttccg acatttgttg cagaagatac ggaagcaaac ttggtagatt ggttagtaac
     6901 acttggtatc gaaccttcca aacgtcaagc gcgtgaagat gttgcaaatg gagctattta
     6961 cattaatggg gaacgtcagc aagatttaga aaaaatcatg gatgcaagtg accggattga
     7021 aaataaattt acaattgtga gacgcgggaa gaaaaaatac ttcttagttt cttataaata
     7081 atagggaaag cactcgtttt taaagacgag tgcttttttg tgcataaaaa aaccttacaa
     7141 acacaaccga agtcatgcat tgtaaggctt ttagttctaa ttaacggctg tagaattcta
     7201 cgataaatgc ttcgttgatt tcagcagcaa gttcagaacg ttctggtaga cggttaagag
     7261 aaccagttag tttttctgca tcgaaagtta cgtattcagg cacgaagctt gaaacttcta
     7321 agctttcagc gattgcagag tttttagcag atttttcacg aacagagatc acttgaccaa
     7381 cagatacttg gtaagaaggg atatctacgc gtttgccatc tacagtgatg tggccatggt
     7441 ttacgagttg acgagctgca cgacgagtgc gagcaagacc aagacggtaa acgatgttat
     7501 caaggcgttg ttctagtaag atcatgaagt tctcaccatg tttaccttgt aatttaccag
     7561 ctttgttgaa cgtgtttttg aattgacgtt cagttaatcc atacatatga cgcaattttt
     7621 gcttttcagc ttgttgcaaa ccatattctg agattttttt acgttgagtt gggccgtgtt
     7681 gacctggagc atacggacga cgctctaatt ctttacctgt tccagaaagt gaaattccta
     7741 aacgacggga aactttccag cttggacctg tataacgagc cataagagac tcctcctttt
     7801 atttgttttt ggtataaaac aaacgtgacg taaaaccaaa tcagggcagt ttaccttcat
     7861 ataccatcac catagcagcc gccggttacg cgatatacca cagaattaca tctgggggta
     7921 aacaacacac tcattcattt tactcaagct gcattttaca catcttccag tatagtatag
     7981 ttactagtag cttgtcaatt tatttcttga gtaatcgcat cacggatttt ttctagccat
     8041 aactggtcca cttcatcaaa acgattaaaa aggggactat caatatcaag cacgccaagc
     8101 agttgattat tttttacaat tggtagaacg atttctgaat tagaagctgc atcacaggcg
     8161 atatgtccag ggaaatcatg cacattttcg attatatacg ttttttgatc tgaggcagca
     8221 gaaccgcaca cacctttacc tagtggaatg cgaatgcaag caggcaaacc ttggaagggg
     8281 ccgagtacta attgatttgt ttctttttca agtaaataaa atccaaccca attaatatca
     8341 gaaagtgctt gatttaatat agaagaaaca ttacttagat tcgcaattag atttggttcg
     8401 ccagcaatca ttgcttgtac ttgttttaaa gcaagtgcat aattttcttc ttttgttccg
     8461 gtcatttttt tgatttcaat cattttttta tccccacatt tcttttcaaa taatgtcttt
     8521 agtatagcat gaacgacaag ggatttcggg aaatttgttt tgtaatagaa tagattttac
     8581 ttgctttaaa aattttttcg ttaaacgcaa gtaattctag gcaaatcgtg gtaaaataaa
     8641 agatgtgtat aatgaactga aaatgaggaa taaaatatac tacatatgga aagatgtaca
     8701 taattgaaaa gatgtatgag cagcacgagt gtggctgttt ttctttcaca agttaacgtt
     8761 gatgggagga ttttggatgt actacatgtt aatcggcttt attatcgtag ttattgcagt
     8821 cattggtgca ggctacatat taaaaagaaa acattaccaa agaataaacg agttagaaga
     8881 gaaaaagatt aaactcagag agcggccggt tattgatgaa ctttcaaaag tgaaaaaatt
     8941 aaaactaaca ggtcagacag aagcgctttt tgaatcatgg cgttcgtcct gggatgaaat
     9001 tgaaactaga ttatttcctg atttagaaga agtgttatta gaagcagaga tgaacacgga
     9061 ccgttacaag ttccgttctg ctacacacgc tgaaaatgat attgagcaaa tgctcgttgt
     9121 aattgaaaag caaatggatc aaattcttgg tggactaaaa gagctactta ttagtgaaga
     9181 aaaaaatgcc aaagaaagtc gtgccacgaa agaaaaattt gcggagttgc gccgagaagt
     9241 tttgacaaga ggatttaaac ttggagaaac gttaccatat attgagacaa aactaagtga
     9301 actgtcagaa agcttaaata gctatgattc attaactgac caaggtgatc atttagaggc
     9361 acgagaaatc gttatagtgg ttcaaaaaga aatgcaagta atcgaagcgc aaatggagcg
     9421 aatcccgtca ttactgcatg aaacagatac cattttgcca gaagaaatga ctaaacttcg
     9481 cgctggctat gaagaaatgg tgcgaaaagg ttattattta gctcaaatgg agttagataa
     9541 agagatttct cgcatgaaaa atcaaattga taaaatgaaa aaaaatgtaa ttaatcttga
     9601 tttagatgaa gcggaacaag gagtagaaga attacataat gaaatcgatt tgttttatga
     9661 tacgcttgaa cacgaagcag aagctcgcca tttcgtgaaa gaaaatcata gcccaacttc
     9721 tgacaagtta caacgccaaa atgccgtttc agatgcactt gctgaacaaa ttacagaagt
     9781 aaaacaaacc tatcatgttg ctgaagatga tctagcggtt tatttaaaaa cgagcgctaa
     9841 attgagtgaa gcaaaagaaa actttgaaca attaactgct ctaattgcta gtggtgagat
     9901 tgcctactcg gcagcgcaag atacattgaa agaaattgat gcagcactta ttacgattag
     9961 cgctgagcag gacaaattcg ctgaagaatt gcgttctttg cgtaaagatg aactagaagc
    10021 gcgtgatgat gctgaacgga tgcgtcgtgc aattattaca ctagatcgca aaatggaacg
    10081 agaacgtttg ccaggtcttc cagaagagta tttatcgcta cgagagcata tgggggaatc
    10141 cattaatgcg cttgagaaac gtttggaaga gaaaccgcta aatatgaaag cagtaagcca
    10201 aaattggcgt attgcagaag aagatttaac tcatttaact gaaaaagccg aggaaatgat
    10261 ggaaaatgtt cgcttagttg agcatgttat ccaatatgct aaccgctatc gattgcgtaa
    10321 caaagaactt gcagatgaac tcgttcaagc agaaaaccat ttctacaatg attatcagta
    10381 taaaaaagca ttagaaattg ctgtaaccgc gctggaaaaa gtggaaacag gagcatttaa
    10441 aaaagtcgaa aaagcgtatg aatcaaaagt aagcgtcgac gatattgaat aaaaacgtaa
    10501 aaacaggtat ttctattttt ataataggaa tcctgttttt ttatgaaaat agtagttgga
    10561 aagtgttgga attatgataa aatggagagt ggaatattgg ggaggagaat ttagttttta
    10621 tgatttattt cgataatagt gcgacaacaa agccaaatgc ggccgtactt gaaacatata
    10681 caaaggtagc gagtaattat tttgctaatc cttcttcgct gcatcgtttt ggtgctaagt
    10741 cgaaagagct gcttgatgca tcaagaaaac aaatcgctgc gatggtgagc gctttgccag
    10801 aagaaattat ttttacatct ggtggcacag aggggaataa tttggcgatt aaagggctcg
    10861 tttatagtta ccaaaatcgc gggaaacata ttgttacctc tagcatcgag catccttctg
    10921 ttcgtatggt aatggaagaa cttgagcagg aaggttttac tgtcacgtat ttaccagtag
    10981 ataaaaacgg cgtcatcaag atggaagcat tgaaagctgc actcacagat gaaacgattt
    11041 tagtgtctat tatgggcgtg aacaatgagg tgggaagcat ccaaccactg cacgaaattg
    11101 gcgaaatgct aaaattgctt gaacatactt tctttcatgt agatttcgtt caaggtatcg
    11161 gaaaaatacc acttgcactt aatgagaatg ctattgattt gctcactttt tcagggcata
    11221 aatttcatgc tctacgtgga accggaatac tttttaaacg aaaaaatgtg catttgcatt
    11281 cagaaattct tggtggtggg caggaaatgg gctaccgcag tggaacagaa aatttagctg
    11341 ggaatgttgc gctggcaaaa gcattacgac taacgctcga aaatgagcca cgaaaagaag
    11401 cattaatcga gattcgcgat tatttactaa cggaaattgc gcaaatgtct gatatgacag
    11461 ttcatacgaa acaaagtgtc gcggctccgc atatcgtttg tttttcggca aaagggcat
//
LOCUS       DABQVC010000089        11515 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.089,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000089 DABQVC010000000
VERSION     DABQVC010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11515
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.089"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..1051)
                     /locus_tag="IBJ56_001643"
     CDS             complement(<1..1051)
                     /locus_tag="IBJ56_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3417897.1"
                     /translation="MKKRTFALALSMIIASGVILGACGSSSDDKKSSDDKSSKDFTVA
                     MVTDTGGVDDRSFNQSAWEGLQKFGKANDMEKGTDGYNYLQSASEADYKTNLNTAVRS
                     DYDLIYGIGYKLKDAIEEVSKQKPKNQFAIVDDTIDDRDNVVSIGFKDNDGSYLVGVV
                     AGLTTKTNKVGFVGGVKGTVIDRFEAGFTAGVKAVNPNAQIDVQYANDFAKADKGQQI
                     ASSMYSSGVDVIFHAAGGTGNGVFAEAKNLKKKDPSRAVWVIGVDRDQWDEGKVTAND
                     GKDYNVTLTSEIKRVDIAVEDLATRAKAGDFPGGTKIEYGLDKDAVGLSEHQDNISKD
                     VLAKVEEYKQKIVDGD"
     gene            1404..2243
                     /locus_tag="IBJ56_001644"
     CDS             1404..2243
                     /locus_tag="IBJ56_001644"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HAM3417898.1"
                     /translation="MAKIGFIGFGSMASLIATKIIETEVATPEELILYSNSKNEHFNQ
                     FYNKYPTAKLADNEAEIFTKADHSFVCKLPLAVLPLMKDCAAVLTPDRHVISIAAGVS
                     TSDIIEITPGLQVSKLIPSLTTAVNVGTTLIAHADTVNQANTSWLETTFEHFGHVMTI
                     REENMDIASDLTSSSPGIIAAIFEQFVEAALRRSSLSDAEVFQMINFALAGTSKLLVE
                     EDYTFSGLIERVATKGGITAEGIELSEEQLPQFFDELLDRTQTKYASSKKEIQAQKQD
                     LLL"
     gene            complement(2277..4550)
                     /locus_tag="IBJ56_001645"
     CDS             complement(2277..4550)
                     /locus_tag="IBJ56_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HAM3417899.1"
                     /translation="MATQKKKTSGRKKSSTRSKKKQSASFRLEITGVILIAIGVIGLL
                     QLGFVGRGFFALAEMFVGLLSYVLLAGSVILGGYMVIRRKMPHLFSKRLVGIYLIVLG
                     FLTYIHMYFIIHNLGANASVISSTWKLVLENLFRPNQVGFVGGGMIGAVITSVTYFLL
                     DRLGTNLIAVLLIIYGFSLVSGISIRQFFSKIAEFVRYLFAKGKVATEKGKEVKAKRD
                     KKKAEKIVEVEPDEVLDVVDPAQEEKAPPIISNFSSKVEQEKAPVEEKTTKQEQDLEM
                     FQQESFENEIYQLPPVDILAPAKVTDQSKEYDQIKVNAKKLEDTFESFGVKAKITQVH
                     LGPAVTKYEVQPSVGVKVSKIVSLSDDIALALAAKDIRIEAPIPGKSAIGIEVANQNV
                     AMVSLREVLENNPKNNPDEKLQIALGRDISGEAMMASLDKMPHLLVAGATGSGKSVCI
                     NGIITSILLRAKPHEVKMMMIDPKMVELNVYNGIPHLLAPVVTNPKKAAQALQKVVAE
                     MERRYDLFSHTGTRNMQGYNDYVKKHNELNEEKQPELPFIVVIVDELADLMMVASNDV
                     EDAITRLAQMARAAGIHLIIATQRPSVDVITGVIKANIPSRIAFAVSSSIDSRTILDM
                     GGAEKLLGRGDMLLLPVGSSKPTRIQGAFLSDAEVEDVVNYVISQQKAQYSEEMIPDD
                     IPEVEGEVTDELYHEAVELVVEMQTASVSMLQRKFRIGYNRAARLIDEMEQRGVVGPY
                     EGSKPRRVNVEINPEHE"
     gene            complement(4701..5627)
                     /locus_tag="IBJ56_001646"
     CDS             complement(4701..5627)
                     /locus_tag="IBJ56_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HAM3417900.1"
                     /translation="MSYVQINESFMEELALKKVKQERRKRLKWFVYKFLMITFGAILM
                     GVGLELFLVNNRILDGGVVGISIIISQLTPLPLGVLTFVLNIPFFIIGYRKIGKVFAL
                     FTLYGIAVMSIVTLVLHDMDPVTDDLLLATVFGGMTLGLGVGLVIRNGGALDGTEIIS
                     IIINGRTPFSTGQIIMFINIVIFIVAGLVFNWDRAMYSLITYFLAYKVIDIVIQGVDE
                     SKSAFIISRYYEEIGAEIMEQLGKGVTYLDATGGYSGDVRKVVFVIVSRFEEVKVKAI
                     LDEIDPDAFLAVGGSMSEVRGGKLMNTKTPHL"
     gene            5878..6837
                     /locus_tag="IBJ56_001647"
     CDS             5878..6837
                     /locus_tag="IBJ56_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HAM3417901.1"
                     /translation="MSDYQVLLYYKYTTIDDPETFAKEHLAACKEMGLKGRILVATEG
                     INGTVSGTVEATNKYMDYMANDARFADMVFKIDAADAHAFKKMHVRPRAEIVSLSLEE
                     DVNPLEVTGTYLEPSEFREALLDEDTVILDARNDYEFDIGHFRGAVRPDIQNFRELPG
                     WIEDNREQLADKKIVTYCTGGIRCEKFSGWLKTAGFDDVSQLHGGIATYGKNEETKGE
                     LWDGQMYVFDERIAVPINQVNPTIVGKDYFDGTPCERYINCANPYCNKQILASIENEK
                     KYLRSCSHDCRVHPANLYTKNLSKEEFTERLQAIDETLPEMVQ"
     gene            complement(6877..7953)
                     /gene="fni"
                     /locus_tag="IBJ56_001648"
     CDS             complement(6877..7953)
                     /gene="fni"
                     /locus_tag="IBJ56_001648"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HAM3417902.1"
                     /translation="MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLEDIQLIGTSIPR
                     YNVKDIDLTTTIVGTNVPFPLYINAMTGGSRHTKKINAELAEIAREVAIPMAVGSQSA
                     ALKNSSLIDTYKIVREINPNGMILANISPEVALQEGLRAIEMLEANALQIHINPAQEL
                     VMQEGDRSFSHWLTRIEEYVKLSPVPVVVKEVGFGMTRETVKTLADIGVQTVDLAGKG
                     GTNFAQIENDRRRDQAYDFLLDWGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIVK
                     ALALGADSVGMAGQIIYSLKKEGVTKTIEKLELWKEQLRGLFVLANAKNISELKTTPL
                     IISGELAKWGALREIDLVKLANRK"
     gene            complement(7982..8329)
                     /locus_tag="IBJ56_001649"
     CDS             complement(7982..8329)
                     /locus_tag="IBJ56_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HAM3417903.1"
                     /translation="MTKWNVYLTKGEYEPWWFFEEWETSIQADFAFSDKEAAFLKYQE
                     LADELLRNYPNHQTKKDCLLAAWNEEEVEYCEDCEDDIQTFHGLILFSDGEVYQPTPE
                     EKETIFKPVLTFA"
     gene            8469..8750
                     /locus_tag="IBJ56_001650"
     CDS             8469..8750
                     /locus_tag="IBJ56_001650"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HAM3417904.1"
                     /translation="MARDTAILRVTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSV
                     EIHAIAEEENLNKFIDAIKKGPSPGCRIEHVYIYKGAPVEERKTFDIVY"
     gene            8836..9117
                     /locus_tag="IBJ56_001651"
     CDS             8836..9117
                     /locus_tag="IBJ56_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417905.1"
                     /translation="MISILQILLEPEFISLTVTFLLMLTIFSYWSAITLLKPKMVLPA
                     DAICLKLVKISLRAQIYITTPNFVINWLAITRKCSAITDDEDSFSFSNV"
     gene            9154..9981
                     /gene="yidC"
                     /locus_tag="IBJ56_001652"
     CDS             9154..9981
                     /gene="yidC"
                     /locus_tag="IBJ56_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HAM3417906.1"
                     /translation="MKKKNIILISVLLGALLLLTGCSMDPSQNTDGFFSTYLIQPFTS
                     FIMFVAKFVGGNYGIAIIITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQA
                     RLKRATSKEEQATIQKEMMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIA
                     SHTFLWFNLGSPDMVLAIIAGLVYLAQYFVSMIGYSPEQKKQMKIIGLMSPIMILFVS
                     FTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK"
     gene            10107..11504
                     /locus_tag="IBJ56_001653"
     CDS             10107..11504
                     /locus_tag="IBJ56_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003735019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
                     /protein_id="HAM3417907.1"
                     /translation="MLSKHQQQARNQLIAISLDDLVPEDHLVRKIDKVINFDFIYPLV
                     EHTYSHTGRPSVDPVVLIKLVLIQYLFGIRSMRQTIKEVETNMAYRWFLGYDFNQKIP
                     HFSTFGKNYVRRFAETEVFEHIFYRILKQAMEAGLVDPDVAFVDSTHVKANANKHKFH
                     KKLIRKETRVYQEVLEDEINVSRVAEGKKPFARKESQEEKESKISDTDPESGYYVKGE
                     REKQFAYSFHTACDTNGFILGSIVTPGNIHDSQQLIPLIEKLKNTLSTPLVVVADAGY
                     KTPIIAKYLWSQGIEAVLPYTRPKGKEGLFSKRAFLYDHYLDSYLCPNEALLSYVRTT
                     RDGYRLYKSNSLHCSSCALLKDCTQNKQKEKMILRHLWEPYLEVSEELRYTEQHKKWY
                     RRRKETIERCFADAKEKHGMRWTTYRGLAKVTLQAMLTFAAMNLKKMANWLWKKAVPF
                     YFFDFKQKKTVLLKY"
BASE COUNT         3538 a         2296 c         2026 g         3655 t
ORIGIN      
        1 tgtccccatc aacgattttt tgtttgtact cttctacttt agcaagaacg tctttagaaa
       61 tattatcttg atgttcagaa agccctacag catctttatc aagaccgtat tcaattttag
      121 ttccgcctgg gaaatctcca gctttagcac gagttgcaag gtcttctaca gcgatatcaa
      181 cacgtttgat ttcagatgta agagttacat tgtaatcttt gccatcgttt gctgtaactt
      241 ttccttcgtc ccattggtca cggtcaacac cgattaccca aacagcacgg ctaggatctt
      301 ttttcttcag gtttttagct tctgcaaaga caccgttacc agtaccacca gcagcatgga
      361 aaattacgtc aactccactt gaatacatgg aagaagcgat ttgttgtcct ttgtctgctt
      421 tagcgaaatc gtttgcatat tgcacatcaa tttgtgcgtt aggattaaca gcttttacac
      481 cagcagtgaa accagcttca aaacggtcga taacagttcc ttttactcca ccaacaaatc
      541 caactttatt tgtttttgtt gttaagccag ctactacacc aactagataa gaaccatcgt
      601 tatctttaaa tccaatactt actacattat cacggtcatc aattgtgtca tcaacaatag
      661 cgaattgatt tttaggtttt tgtttagaaa cttcttcaat tgcatctttc agtttgtaac
      721 caattccata aattaaatca taatcgctac gaacagcagt gtttaagttt gttttgtagt
      781 ctgcttcaga agctgattgc aagtagttgt aaccatctgt acctttttcc atgtcgttag
      841 ctttaccaaa tttttgtaag ccttcccatg ctgattggtt aaacgaacgg tcatcaacgc
      901 caccagtatc tgtaaccatt gctactgtaa aatctttact gctcttatca tcgctacttt
      961 ttttatcgtc gctactcgaa ccacaagcac ctaggataac gccagaagca ataatcattg
     1021 atagtgctaa agcaaatgta cgctttttca ccttaaaacc cctcccgaga gatataatgt
     1081 tagtcagagc tttctgtcaa aacaaacatt caggcgcgta ttaaaaaatt atgtatggtc
     1141 cctttttcgg aaaacgcaca aaaacattta acgtcttctc taactgttct taatataaca
     1201 tggaaaataa aataaataaa taaccaactt cataaatttt taatgcaaat gaattcagaa
     1261 aatttaattc tgtcggaatc attcgttttt ttgtcaatcc ttaggcacaa gcgcattaac
     1321 gtgaaaaagt aaacaatcaa gtttagttgc aatcctcttt tattcccttc ataataaaat
     1381 gaataatgaa aggcgggatg gaaatggcaa aaataggttt tattggtttt ggaagtatgg
     1441 catcgttaat tgcgactaaa ataatagaaa ctgaggttgc aactcccgaa gaactcatcc
     1501 tttattccaa ttcaaaaaac gaacatttca accaatttta taataaatat ccaactgcta
     1561 agctagctga taacgaagcc gaaattttca caaaagcaga tcatagcttc gtttgtaagt
     1621 tacctctcgc agttttacca cttatgaaag attgtgctgc ggtattgaca cctgatcgtc
     1681 atgtgatttc tattgcagct ggtgtgagta cttcagatat tattgaaatc actccgggtt
     1741 tacaggtaag taaattaatc ccttctctca caactgctgt taatgttgga actactttga
     1801 ttgcgcacgc tgacacagtg aatcaagcta acacttcttg gttagaaacg acatttgagc
     1861 attttggaca tgtaatgact atccgagagg aaaatatgga tatcgctagc gatttaacta
     1921 gctcttctcc tggaataatt gctgctattt tcgagcaatt tgtagaagct gctcttagaa
     1981 gatcttcatt atcagatgcg gaagtatttc aaatgattaa ttttgcttta gctgggactt
     2041 ctaaattatt agtagaagaa gattacacgt ttagtggctt aattgaacgc gttgctacaa
     2101 agggcgggat cactgctgaa ggcattgaac tcagtgagga gcagttaccc caattttttg
     2161 acgaactcct tgaccgaact caaacaaaat atgcttctag taaaaaagaa attcaagcac
     2221 aaaagcaaga tttactttta taaaaaaggg ttgcgactac aaatcgcaac ctttttttat
     2281 tcatgctctg gattaatttc cacatttact cttcttggtt tacttccttc gtaaggtcca
     2341 actacacctc tttgttccat ttcatcaatc aacctagctg cacgattata gccaatacgg
     2401 aattttcttt gtaacatcga aacggaagct gtctgcattt ctacaacaag ctccactgct
     2461 tcgtgataca attcatccgt tacttctcct tcgacttctg gaatatcatc aggaatcatt
     2521 tcttcgctat attgtgcttt ttgttgcgaa ataacgtaat taactacatc ttctacttct
     2581 gcatccgata aaaaagcgcc ttgaattcgg gtaggtttac tagagccaac tggaagtaac
     2641 agcatatcgc ctcgtccaag taacttctct gctccgccca tatcaagaat cgttcttgaa
     2701 tcaatggaac ttgaaacggc aaaagcaatt cgagacggga tattcgcttt aattacgccg
     2761 gttataacat ctactgatgg acgctgtgtt gcgataatta aatgtattcc cgcagcacgt
     2821 gccatttgag caaggcgagt aatcgcatct tctacgtcat tggaagctac catcatcaag
     2881 tcagctaact catctacaat tacaacaata aaaggcaatt caggttgttt ttcttcgttc
     2941 agctcattat gtttttttac ataatcattg tagccttgca tattacgagt acctgtatgc
     3001 gaaaataaat catagcgccg ttccatttcc gcaacgactt tttgcaatgc ttgggctgct
     3061 tttttaggat tggtaacaac tggtgcgagc aagtgtggaa tgccattata gacatttagc
     3121 tcaaccattt ttggatcaat catcatcatt ttgacttcat gtggtttggc acggagtaaa
     3181 atgcttgtaa taataccatt aatacacaca gatttcccgc taccagttgc tcctgcgacg
     3241 agtaaatgag gcatcttatc gagacttgcc atcattgctt ctccagaaat atcacgacca
     3301 agtgctattt gaagcttctc gtctggattg tttttagggt tgttttctaa cacttcacgt
     3361 aaagaaacca tggctacatt ttggttcgct acttcgattc caatagcaga tttccccgga
     3421 attggcgctt caattcgaat atcttttgct gctagagcaa gtgctatatc atcactgagt
     3481 gaaacaatct tgctcacttt aacaccgaca gatggttgta cttcatattt tgtcactgca
     3541 gggccaagat gaacttgggt gatttttgct ttcactccga agctttcaaa ggtatcttct
     3601 aatttttttg cgtttacttt aatttggtca tattctttac tttgatccgt tactttagcc
     3661 ggtgctaaaa tatcaacggg gggcaattga taaatctcat tttcgaacga ttcttgctga
     3721 aacatttcta aatcttgctc ttgtttggtt gttttttctt cgactggtgc tttttcttgt
     3781 tctactttgg agctaaagtt agagatgatt ggtggcgctt tttcttcttg cgcggggtct
     3841 actacatcta gtacttcatc aggctcaacc tcaactattt tctctgcttt ctttttatca
     3901 cgtttcgctt tcacttcttt gcctttttcg gtcgcaactt tgccttttgc aaataagtaa
     3961 cgaacaaatt cggcaatttt ggagaaaaat tgccggatgg aaatacccga tacaagggaa
     4021 aaaccataga taataagtag aacagctatc aaattcgttc ctaatctatc taataagaaa
     4081 tacgtaacgg aggtaattac tgccccaatc attcccccac caacaaaacc aacttgattt
     4141 ggtctaaata aattttctaa tactaatttc caagtactag aaataacgga ggcatttgct
     4201 cctaagttgt ggataatgaa atacatatgt atatatgtca aaaagcctaa aacaataaga
     4261 taaataccga ctagtctttt gctaaataag tgaggcattt ttcttctaat caccatgtac
     4321 ccaccaagta tcacgctacc cgcaagtaat acatagctta aaagaccaac aaacatttca
     4381 gccagagcaa aaaaaccgcg accgacaaag cctaattgta aaagtccgat aactcctatt
     4441 gctattaaaa taacccctgt tatttctaaa cgaaaagagg ctgattgttt cttttttgag
     4501 cgtgttgacg attttttacg tccgctcgtt tttttctttt gtgtcgccat ttcaagtccc
     4561 acccattcct tttttgcttg ttttattata gcacatctat ccgttctgtc gctcatacta
     4621 tagccctatt atacaaacaa atgtttcctt tcgtcaaaaa accatatatc ccaagtagga
     4681 gatatatggt ttctgttttg ttataggtgc ggtgttttcg tgttcatcag ctttccgccg
     4741 cggacttccg acatacttcc tccgacagct aagaaggcat ctggatctat ttcatccaga
     4801 atggctttca cttttacttc ttcaaatctt gagacgataa cgaaaactac ttttcttaca
     4861 tcaccggaat acccgccagt tgcatctaag tatgtaacac cttttccaag ttgctccata
     4921 atttctgctc caatttcctc gtaatagcgg ctgataataa aagcactttt cgattcatct
     4981 acaccttgaa taacaatatc aattacttta tacgctagga aatacgtaat taaggaatac
     5041 atcgctcgat cccagttgaa cacaagtcca gcaacgataa aaataacaat attaataaac
     5101 ataataattt gtcctgttga aaatggcgtc cgaccgttaa taatgattga aatgatttct
     5161 gttccatcaa gcgcccctcc gttacgaata acaagaccca ccccaagacc aagcgtcatt
     5221 ccgccaaaaa cagtcgcaag tagtaaatca tctgtcactg gatccatatc gtgtaaaacg
     5281 agcgttacaa tcgacatgac tgcaattccg tacaatgtaa acagcgcaaa tacttttccg
     5341 atttttcggt aacctatgat gaaaaacgga atattaagta caaaagttaa aacccctagt
     5401 ggcagcggcg ttagttgcga aataataatc gaaataccaa cgactccacc atctaaaatt
     5461 cggttgttta caaggaaaag ttccagccca acccccatca aaattgcgcc aaaggtaatc
     5521 attaaaaact tataaacaaa ccacttcaac cttttcctgc gttcttgttt tacttttttt
     5581 aaagctagtt cttccataaa cgattcattt atttgcacat agctcacgcc caatccttac
     5641 ttcattcttt attttaggca atgaaaacag gatttgcttt catcaacaaa attttcgctt
     5701 catatttaat aagtatacca tagctttttt gtacttgtac atatagttaa ctataagaag
     5761 cattttttta cggttcggtt acttgccagt ctgaatttgc tatagtatag tattaatgcg
     5821 caaacttgtg gagaattttt cttacacatg aaatacattt tgaagggtga taagattatg
     5881 agtgactatc aagtgttgtt atattacaaa tacacaacga ttgatgatcc agaaactttt
     5941 gcaaaagagc atcttgctgc ttgcaaagaa atgggattaa aaggccgaat tttggtggct
     6001 actgagggga ttaatggcac cgtttcgggt acagtagaag caacaaacaa atatatggat
     6061 tatatggcaa acgatgctcg cttcgctgat atggtattta aaattgacgc ggctgatgct
     6121 catgctttta agaaaatgca tgtacggcct cgtgctgaaa ttgttagttt aagtttagaa
     6181 gaagatgtta atcctttaga agttacaggg acttatttag agccttctga gtttcgtgaa
     6241 gcattgttgg atgaagatac ggttatttta gacgctagaa atgattatga atttgatatc
     6301 ggtcatttcc gcggcgctgt tcgtccagat attcaaaatt tccgtgagtt accaggatgg
     6361 attgaagata atcgcgagca acttgctgat aaaaaaatcg tcacttactg tactggtggt
     6421 attcgttgtg agaaattttc cggttggtta aaaacagcgg gttttgatga tgtaagtcaa
     6481 cttcacggcg ggattgcgac ttacggtaaa aacgaagaaa ccaaagggga actttgggac
     6541 ggccaaatgt acgtttttga tgaaagaatc gcggttccga ttaaccaagt aaaccctact
     6601 atcgttggga aagattactt tgacggcacg ccttgcgaac gttacatcaa ttgtgctaac
     6661 ccgtattgca ataagcaaat cctagcttct atcgaaaatg agaaaaaata tttgcgtagt
     6721 tgttcgcatg attgccgcgt tcatcccgca aatctttata cgaaaaattt atctaaagaa
     6781 gaattcactg aacgtcttca agcaatcgat gaaactttac cagaaatggt tcaataaata
     6841 aaaaaccagc tttgctaaat gaatagcagc tggtttttat tttctattag ctagtttgac
     6901 taaatcgatt tctcgtaatg cgccccattt agcaagttca ccacttatga ttaatggcgt
     6961 tgtttttaat tctgagatgt ttttcgcatt tgcaagaaca aataagccac gtagttgttc
     7021 tttccatagc tccagttttt caatggtttt ggtgacgccc tcttttttta gtgaataaat
     7081 aatttgtcct gccataccta cactatctgc tccgagcgct aatgctttaa cgatatctaa
     7141 cgggttccta ataccacctg acgctaaata agcaatcttt ggcgcatctt ggtgttgcat
     7201 gtctattaaa gcctgtccgg tggaaatacc ccaatcaagt aagaaatcat atgcttgatc
     7261 acggcggcgg tcattttcaa tttgggcaaa gtttgttccg ccttttccag ctaaatctac
     7321 ggtttgaacg ccgatatcag ctagcgtttt tactgtttca cgcgtcattc caaagccaac
     7381 ttcttttaca actactggaa ctggcgaaag cttgacgtac tcttctattc tagttagcca
     7441 atgactaaaa gaacggtcgc cttcttgcat aactaattct tgtgccgggt taatatgaat
     7501 ttgaagtgca tttgcctcta acatttcgat cgcccgaagt ccctcttgaa gggctacttc
     7561 tggactaata tttgctaaaa tcatcccatt cggattgatt tctctgacaa ttttataggt
     7621 atctattagc gaactatttt ttagagctgc agactgggaa ccaacagcca ttgggatagc
     7681 tacttcgcgt gctatttcag caagttcggc attaattttt ttcgtatgcc gacttccacc
     7741 tgtcatcgca ttaatataca atgggaaagg cacattggtc cccacaatag ttgtggttaa
     7801 atcgatatct ttcacattat agcgcgggat agaagttcca atcagttgaa tatcttctaa
     7861 actcgatggc gctaactgct cattctgttt tactccaaga gccacgtgtt cgtcttttcg
     7921 acgttctctt aataagtcat cgttcttctg catgtgttaa tcctccaaat ttcttttcgc
     7981 ctcaagcaaa ggttaaaaca ggtttaaaaa tcgtctcttt ttcttcggga gttggttgat
     8041 acacttcccc atcagaaaat aaaataagcc cgtgaaatgt ttgaatatca tcttcacagt
     8101 cctcgcagta ctcaacttct tcttcattcc aagctgctaa caaacaatct ttttttgttt
     8161 gatgattagg ataattccgt agtaactcgt ctgctaactc ttgatacttc agaaaggcag
     8221 cttccttatc tgaaaaagca aagtcggctt gaatggaagt ttcccattcc tcgaaaaacc
     8281 accaaggctc gtattctcct ttagttagat agacattcca ttttgtcata tcaaaaactc
     8341 ccaacagtaa atataataca cttattatag cataagcttt ctggaaatac tggaatgcaa
     8401 atttttgaaa gtaatgctaa aaaaagatac actagtaata aggaaaaata aaaggagttg
     8461 gtttcgttat ggctagagat acagcgattt tgagagtgac tggatttgtg caaggtgttg
     8521 gatttcgtta cacaaccaaa cacgttgctt acaaatatga cattagtgga acagtgaaaa
     8581 atttagatga cggttccgtt gaaattcatg caattgctga agaagaaaac ttaaataaat
     8641 tcattgatgc tatcaaaaaa ggcccatcgc ccggttgtcg tatcgaacac gtttatattt
     8701 acaaaggtgc ccctgtagaa gaacgaaaaa catttgatat cgtttactaa aattccaaaa
     8761 atagtagttg tgctatagct ctttttgcat tatagttaat gagtactaaa accttgaaag
     8821 gagcgactgc gtggcatgat ttccatttta caaattttac ttgaaccaga attcatttca
     8881 ctcacagtaa cgtttttatt aatgttgacg attttcagtt attggtcagc cattacatta
     8941 ttaaaaccga aaatggtgct acccgctgac gctatctgct taaagctagt aaaaatttca
     9001 cttcgagctc aaatttatat aactacgcct aattttgtta ttaattggct ggctataacc
     9061 aggaaatgta gcgccattac tgatgatgaa gacagttttt cattttccaa cgtatgaatt
     9121 gattatttta ctatttagga ggaaaatgaa acattgaaaa agaaaaatat tattttaatt
     9181 agcgttttac ttggtgcttt actattactt acaggttgta gtatggaccc ttcacaaaat
     9241 acagatggtt ttttcagcac ttatttaatc caaccattta ctagttttat tatgttcgtt
     9301 gcaaagtttg ttgggggtaa ttacggaatt gcgattatta ttacaacgtt acttatccgt
     9361 gcactaatta tgccactaaa cttgcgtact gctaaagctc aaatgggaat gcaatccaaa
     9421 atggccgttg ccaaaccaga aattgatgaa attcaagctc gactaaaacg tgcaacatcg
     9481 aaagaagaac aagccactat tcaaaaagaa atgatggccg tctattccaa gtataatatc
     9541 aatccaatgc aaatgggttg tttaccatta cttattcaaa tgccaatatt gatggctttc
     9601 tattatgcta ttcgcggatc ttccgaaatt gctagccaca cattcttatg gtttaactta
     9661 ggttcaccgg atatggtgct ggcaattatc gccgggcttg tctacttagc acaatacttt
     9721 gtttccatga ttggttattc accagaacaa aagaaacaaa tgaaaattat cggtttaatg
     9781 tctcctatta tgattttatt cgtttccttc acagctccct ctgcactagc gttatactgg
     9841 gctgtcggcg gactcttctt agcaggtcaa acattactaa cgaaaaaact ttacatgaat
     9901 aaacacccag aaattaaagt aatggagcaa gaagaaaaag aattcgagca aatcgtggaa
     9961 gaacaaaaga aagaaaaata aaaaaaaccg caacctcgtc ataaggttgc ggtcagactg
    10021 tagacaaagt gagaaatcat tttatctaca gtcttttttg ttttataata atgttaaggc
    10081 ttacataaaa caacgaggtg attaaaatgc tttctaaaca tcaacaacag gcgcgaaatc
    10141 aattaatagc catctcttta gatgatttgg tcccagagga ccatttagta agaaaaatag
    10201 ataaggtgat taattttgat tttatctacc cattagtaga acatacttat tctcatacag
    10261 gaagacctag tgtagacccg gtagttctta taaagctagt actcatccaa tatctttttg
    10321 gcatccgttc catgcgccaa actataaaag aagtagaaac gaacatggct taccgctggt
    10381 ttttaggata tgatttcaat caaaaaatcc ctcacttctc tacttttggt aaaaattacg
    10441 tgcgacgttt tgcagaaaca gaggtgttcg aacacatttt ttatcgcatt ttaaaacaag
    10501 ccatggaggc tggtttagtg gaccctgacg ttgcgtttgt ggactctacc catgtgaaag
    10561 ccaatgcgaa taaacacaaa tttcataaaa aattgattcg aaaagaaaca cgcgtttatc
    10621 aagaagtact agaagatgaa attaatgtca gccgagttgc cgaaggaaaa aagccattcg
    10681 ccaggaaaga aagtcaggag gagaaagaaa gcaaaataag tgatacggat cccgaaagcg
    10741 gctactatgt caaaggagaa cgggaaaaac aatttgctta ttctttccat acggcttgtg
    10801 ataccaatgg ttttattcta ggttccattg tcactccagg taatattcat gatagccaac
    10861 aattgattcc acttattgaa aaattaaaaa acaccctttc tacccctttg gtggtcgttg
    10921 cagatgctgg atataaaaca cccattatcg ctaaatacct ttggagtcaa ggaatagaag
    10981 cggtgcttcc gtatactcga ccaaaaggaa aagaaggctt attttcgaaa cgagcgtttc
    11041 tctatgacca ttatttagac agttatcttt gtccaaatga ggcattgtta tcctatgttc
    11101 gtactacaag agatggttat cgtctttata aatctaattc acttcactgt agtagttgcg
    11161 ctctcttaaa ggattgcacg caaaataaac aaaaagaaaa aatgatttta cgacatcttt
    11221 gggagcctta cttagaagtt tcggaggaac tgcgctacac agaacagcat aaaaaatggt
    11281 atagacgcag gaaagaaacc atcgaaagat gttttgcgga tgccaaagaa aagcatggta
    11341 tgagatggac tacttatcgc ggacttgcaa aagtaaccct ccaagcgatg cttacttttg
    11401 cagccatgaa cctgaaaaaa atggctaatt ggctatggaa aaaggcggtg cctttttatt
    11461 tttttgactt taaacagaaa aaaacggtcc ttctcaaata ttaaagcttg agaag
//
LOCUS       DABQVC010000090        11420 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.090,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000090 DABQVC010000000
VERSION     DABQVC010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11420
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.090"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            206..646
                     /locus_tag="IBJ56_001654"
     CDS             206..646
                     /locus_tag="IBJ56_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3417908.1"
                     /translation="MDEKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIREL
                     QKESELTLGELAERMKLGKSTVSGIVDRLVKAGFLKRTRNESNRRALSLELTEKGATK
                     AAETYHVFFNRLEPILEIGEERLKEMLEMHQEIITILEREGARD"
     gene            643..2112
                     /locus_tag="IBJ56_001655"
     CDS             643..2112
                     /locus_tag="IBJ56_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HAM3417909.1"
                     /translation="MNMKAASTSVKRNGILIVMLMGAFVTILNQTLMNVALPSIMKDF
                     GITASQGQWLSTGFMLVNGVMIPMTAFLIERFTTRQLYLFAMITFAIGTAIGGFATDY
                     TMLIAGRMVQAIGAGIVMPLLTVVVLNLFPMERRGRAMGLIGLAMNFAPAIGPTLSGW
                     IVQQYDWRNLFFIIIPFAILDIVVAIFLLKNVGKRTFPKLDILGVIMSTVGFGSLLLG
                     FSNAGDHDWLTWKVAGFIILGLVVLGIFIRYQTSNKAPLLNFRVFKYPTFALTTAISF
                     FVVMGLFGGMLLLPIFLQTVRGFSPLESGLVLLPGALVTAILSPVTGVMFDRFGAKYL
                     SLVGLIIMAGSTFMFTNLDESTTLTFIIIVQTIRSAGMAMVMMPLQTAALNSLPLKLA
                     SHGSAMFNTMRQVAGSIGTAALITVMSKSAASFATKLGPADVIGKTKTDIANHVLIHG
                     IETAFLVAGILSVVACVLALFIQKNRSAMDPIVTKTEKA"
     gene            2324..3106
                     /locus_tag="IBJ56_001656"
     CDS             2324..3106
                     /locus_tag="IBJ56_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HAM3417910.1"
                     /translation="MKDNFFGREYDIAPAGGETGQAFVATHEDEKFFLKRNSSPFLAA
                     LSVENIVPKLVWTRRVENGDVITAQKWVNCHILTREEMVGPRVAKLLAKIHHSENLQH
                     MLAKIENCYFSADQLLSLIKVNTKANNELSKEIIAAIRYLEQNLSAAQTNDYVVCHGD
                     VNHNNWIISEENELFLVDWDGAMLADPANDIGMILYQYIPRKDWVSWLSNYGTTLTEE
                     LHRKLKWYTICQTVMQLITEHSNEANERAKQIFQNAIEDDEV"
     gene            3113..3757
                     /gene="trmB"
                     /locus_tag="IBJ56_001657"
     CDS             3113..3757
                     /gene="trmB"
                     /locus_tag="IBJ56_001657"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HAM3417911.1"
                     /translation="MRVKHKPWAKDRLEEFPAIYIKNPEDFKGQWREVFGNDNPIHIE
                     IGSGKGQFISGMAKANPEINYIGIEMIESVLVSALDKAIEADVPNLRLVARDAKLLEE
                     CFEKGEIAQIYLNFSDPWPKKRHTKRRLTNPTFLTIYERLLPEAGEIHFKTDNRSLFE
                     YSLVAFSEYNMLLTFVSLDLHNSDYEGNIKTEYEEKFSAKGFPIYRLEAKFDRN"
     gene            3818..4669
                     /locus_tag="IBJ56_001658"
     CDS             3818..4669
                     /locus_tag="IBJ56_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAM3417912.1"
                     /translation="MDSIQIGKIKIYWLRGGYTHFDGGAMFGVVPKPLWEKKYPANDK
                     NQLANVTDPMFFQYLGKNYLIDSGLGNRRLTEKQKRNYGVTEESFVLEDLAQLSIAPE
                     DIDYVLMTHLHFDHVLGLTGVSEEGSFYSIFPNAEIWTSKTEWEEMQHPNIRSKATYW
                     QENWQTIAGQIHTFTKEKEFNDAIKMTHTGGHSNGHSVVWIESDGEKAIHMADIFPTF
                     AHQNVLWVTAYDDYPMTSISAKQEIFKQTFGENYWFLSYHDARFRAVQMDGNGKIEAE
                     LKIEQRN"
     gene            4803..5051
                     /locus_tag="IBJ56_001659"
     CDS             4803..5051
                     /locus_tag="IBJ56_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HAM3417913.1"
                     /translation="MEIEQKKALVTRFAKIEGHVRSIKTMTEEERDLETIMQQIAAVK
                     KAMDAAAKLIYTEQMKELIEQGETDEVVIKKKIDSFIR"
     gene            complement(5088..5399)
                     /locus_tag="IBJ56_001660"
     CDS             complement(5088..5399)
                     /locus_tag="IBJ56_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417914.1"
                     /translation="MNWKAFIAGVGAGAAAGHLVYHYLLSDKTISGDVILEKVKDAFK
                     QEGPIEGSWIQLKKQHYKKFAIDTFVYHGGITCIREGEKKQFEFIADANTGTIIDVYL
                     A"
     gene            5597..6670
                     /locus_tag="IBJ56_001661"
     CDS             5597..6670
                     /locus_tag="IBJ56_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HAM3417915.1"
                     /translation="MEKETLAMFKELTELQGTSGDEHRIRAFMRKELEPVSDEIIQDG
                     LGGIFGVRHGAEGGPRVLVAAHMDEVGFMVTQITENGLIRFQTIGGWNPQVLQAQRVQ
                     IMAPNGPVIGVVASVPPHLLSEAERSKPTDPKNLLIDIGADDKADAEKIGIKPGQFIV
                     PVAEFTPLANPKKILAKAWDNRYGVGLAIELMKELEGESLPNTLFAGANVQEEVGLRG
                     AGVSANMIKPDLFFALDASPANDTTGNKSQFGQIGQGFLLRIFDRTMIMHRGMREFLI
                     DTAETNKIPYQYFVSPGGTDAGKVHTSLSGIPSAVIGVPARYIHSSNSILHVDDYAAA
                     KEMITTLIRSLDKTTYETIKNNA"
     gene            6663..6881
                     /locus_tag="IBJ56_001662"
     CDS             6663..6881
                     /locus_tag="IBJ56_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417916.1"
                     /translation="MREIIKKPVIVVGLFLLVASLVFLLGYVTDLPYFRDSELGWIWT
                     TMIAGIVTLFFGYFHDFLEKKKARSKVR"
     gene            6995..7306
                     /locus_tag="IBJ56_001663"
     CDS             6995..7306
                     /locus_tag="IBJ56_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HAM3417917.1"
                     /translation="MKKLESVEQFDAIKSEGKSVFMFSADWCGDCKFIEPVMPEIEAE
                     NEDFVFYHVDRDEFIDLCADLAIFGIPSFLAFEDGEEVGRFVSKDRKTKEEINDFLAA
                     I"
     gene            7341..8141
                     /locus_tag="IBJ56_001664"
     CDS             7341..8141
                     /locus_tag="IBJ56_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1444 domain-containing protein"
                     /protein_id="HAM3417918.1"
                     /translation="MAKMTTLKMKEKLEKELQAPNRQFSYNRDNDTLTVAQNGKKVTL
                     TIPQIIANFENDGNAAVEKIVYYVEEGFRAAAGNVELENNKASIYPVVRATSFPDETK
                     AGEALLTDDHTAETKIFYAVDLGKSYRFIEESMLKKAQLTYKEIREVAFNNLANLEIP
                     LKKDSVNGNDFYFVRTNDGYDASRLLNEAFLREMREKLTGEMVLAVPHQDVLIIGDIQ
                     DNTGYDVLAHMTMDFFADGLVPITSLPFVYNNGKLEPIFIMAKNRLKE"
     gene            8147..8764
                     /locus_tag="IBJ56_001665"
     CDS             8147..8764
                     /locus_tag="IBJ56_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 domain-containing protein"
                     /protein_id="HAM3417919.1"
                     /translation="MIVNAFYNKEGVGDTLLIETGEVTFENREWERRGDVARIFDRET
                     KELAGYNIFNSSNYFNITANGKVDLTEELVAQMNQVIEKAGFEPEIVADLSPKFVVGY
                     VESKEKHPNADKLNVCKINVGDEVLQIVCGAPNIDAGQKVVVAKIGAVMPSGLIIKPS
                     NLRGEDSFGMVCAARELAIPDAPTEKGIMVLEESAVVGEAFPVNF"
     gene            9074..>11420
                     /locus_tag="IBJ56_001666"
     CDS             9074..>11420
                     /locus_tag="IBJ56_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HAM3417920.1"
                     /translation="MGWFKDFFFGDMDEEIDTYEDTSSRKVEKKAKQRAPEVVPKSNV
                     TAIKTKERTIRNERPVAYKTVPKQKHMQPVKRQMKTQMVYQYPKGEFRFPLIPDKQKS
                     QPIQPKKQPITKRQAAETQPVKEETRKRPFTATDVPSPVYAFNKRPSKFEFAVTEAEE
                     LSTIQEDLTITPVDLLDSAEAETIAFDTELNRQIEEEIVSVPVTEEVITEPPEVKVTP
                     EPVEQQEPARVSLITEEPAQTKTTTRSKQVESNRQEQLLKSRIPFNVMMVKKDKQALR
                     KEEAQEINGQQPVEVEAEQTNTVREAQVATVSYPTNYEFPSFSLLHPPVSKREDDSWL
                     QMQQEMLDETLENFNVQASVVNRTQGPAVTRFEVQPEKGVKVSKITNLTDDIKLNLAA
                     KDIRIEAPIPGKSTVGIEIPNQTSRPVMLSELMNTEAFQSSTSPLTAALGLDISGTPI
                     ITDLQKMPHGLIAGATGSGKSVCINSLLVSLLYKATPDQLKLLLIDPKMVELAPYNRI
                     PHLVSPVITDAKAATVALKWAVEEMERRYQLFSHTGVRNMEKYNEYASHPDHTGEKLP
                     YILIVIDELADLMMVAPNDVEESISRIAQKARACGIHMIVATQRPSVDVITGLIKANI
                     PTRVSFSVSSQIDSRTILDASGAEKLLGKGDMLFLPSGASKPVRLQGTFVSDEEIDAV
                     VAHVRSQGEADYIFEEQELLVKETAKENTDELFEEACDFVLSQNAASTSLLQRHFRIG
                     YNRAARLMESLENHQIVSGINGSKPRDVIITKDQLAKLRNKE"
BASE COUNT         3773 a         1907 c         2506 g         3234 t
ORIGIN      
        1 ttttttagga aggttttttt gcgtcttgat acctatgtaa aaatttatat aactttttta
       61 tccgttgaaa ttacgccatt ggctccgctt tcagtttgaa aagcctggtt ttaagcgatt
      121 gacaaatttt tttggaggtg tataattcaa aaggctaata gttcgcatgc gaaatatttg
      181 ggagcgaaca atatggaggg aagtcatgga tgaaaaatta gtgaaagagg ttattttctc
      241 ttttcgcgaa gtacaacgaa aaacacatca cgtgcttgca gaagaagcgg cgaataggga
      301 gattacaaca acccaattac ttgcaatcag agaattacaa aaagaatcag aattaacact
      361 tggcgaatta gcagaacgaa tgaagcttgg taaaagtact gtatctggta ttgtagatcg
      421 attagtgaaa gcgggatttt taaaacgtac aagaaatgaa agtaatcgcc gcgcactcag
      481 cttagaatta actgaaaaag gagctacaaa agcagcagaa acgtatcatg tattcttcaa
      541 ccgtttagaa cctatcttag agattggcga agaaaggtta aaagaaatgc tagaaatgca
      601 ccaagagatt attaccattt tagaaaggga aggtgcacga gattgaatat gaaagcagca
      661 agtacatcag tgaagcgtaa tggtattttg attgttatgc ttatgggcgc ctttgttacg
      721 attctcaacc aaacgttgat gaatgtcgcg ctaccaagta ttatgaaaga ttttggaatt
      781 acagccagtc aagggcaatg gttatcgact ggatttatgt tggttaatgg tgtcatgatt
      841 ccaatgacgg cctttttaat tgaacgattt acaacgcgtc agctttactt atttgcgatg
      901 attacctttg cgattggtac tgcaattggc ggatttgcga cagattatac gatgcttatt
      961 gctggccgta tggtacaagc aattggggct gggattgtta tgccacttct tactgttgtg
     1021 gtcttaaact tattcccgat ggaacgaaga gggcgagcaa tgggcttaat tggtcttgct
     1081 atgaactttg ctccagcaat tggtccgaca ctttcagggt ggattgttca acaatatgat
     1141 tggcgcaatt tattctttat tattattcct ttcgcgattc ttgatattgt cgtagcgatt
     1201 ttcttactta aaaatgtcgg aaaaagaact ttcccgaaac tcgatatcct tggggttatc
     1261 atgtcaacag tcgggtttgg tagtttatta ttaggattta gtaatgctgg agaccatgat
     1321 tggttaacat ggaaagtagc tggatttatt attcttggtc tagtagtgct aggaatattt
     1381 attcgttacc aaacaagcaa caaagcgcca ctacttaact ttagagtatt taaatatcct
     1441 acctttgcgc ttacaacagc cattagtttc tttgttgtaa tgggcctttt tggtggcatg
     1501 ttattactac caattttctt acaaactgtt agaggatttt caccactaga atcggggctt
     1561 gttctcttgc cgggtgcgct tgtcacggcg atactttcac ctgtaactgg ggtgatgttt
     1621 gaccgttttg gggctaaata tttatcactt gttggcttaa ttatcatggc gggatcgacc
     1681 ttcatgttta ccaacttgga tgaatctact acattgactt ttattattat tgtacaaacg
     1741 attcgttcgg ctgggatggc gatggttatg atgccactgc aaacagcagc gctcaactcg
     1801 cttccattaa aactagcatc tcatggttca gcaatgttta ataccatgcg tcaagttgct
     1861 ggttcaatcg gaacagcggc gcttataacg gttatgtcta aaagtgctgc gagtttcgct
     1921 actaagctcg gaccagccga tgtgattggc aaaactaaaa ctgatattgc caaccatgtt
     1981 cttatccacg gaattgaaac ggccttttta gttgccggaa ttctttctgt agttgcttgt
     2041 gtcctagcac tatttataca aaaaaataga agtgccatgg atccaattgt tactaaaacc
     2101 gaaaaagcat aaaataatga aaaaagtgtg ttccattttg atggaatgca ctttttttgt
     2161 gtaaataaag taaatttgta aaaaaatcta gataacgaac atatgttgac ttgactagta
     2221 aggctaagag aagtaaaatc atgaatagtt acctatttgt tcggaagtga aataaacgag
     2281 ggatagtgaa gttgcaaaga gctaataaaa ggtgtgcatg tagatgaaag ataacttttt
     2341 tgggagagaa tatgacatag ctccggccgg aggggaaact ggccaggcat tcgttgcaac
     2401 acatgaagac gaaaaattct ttttaaaaag aaattcttcg ccttttttag ctgcgctttc
     2461 tgtagaaaac atcgttccaa aattagtttg gacgagacgc gtagagaatg gagatgtcat
     2521 cactgctcaa aaatgggtga attgccatat tttgacacgt gaagaaatgg ttggaccgcg
     2581 agtggcaaaa ctattagcta aaatccacca ttcagaaaac ttgcaacaca tgctagcgaa
     2641 aatcgaaaac tgctattttt ctgcagatca acttttgagt ctcataaaag taaacacaaa
     2701 agctaataac gagctatcga aagaaataat agcagcaatc cgctatttag aacagaatct
     2761 ctctgctgct cagacgaacg attatgtagt ttgtcacgga gatgttaacc ataataattg
     2821 gattatttct gaagaaaacg aactgtttct agttgattgg gatggtgcga tgcttgcaga
     2881 ccctgcgaat gatatcggaa tgattttata ccaatatatt ccgcgaaaag attgggtaag
     2941 ttggctctct aattacggca ccacattaac cgaagaatta catcgcaaat taaaatggta
     3001 tacaatttgt caaacggtta tgcaactcat aaccgagcat tcgaatgaag ccaatgaacg
     3061 agcaaaacaa atttttcaaa atgcaataga agatgatgag gtgtaaagaa agatgcgtgt
     3121 aaaacataaa ccatgggcaa aagatagatt ggaagaattc ccagcaattt acatcaaaaa
     3181 cccagaagat ttcaaaggtc agtggcgtga agtattcgga aatgataatc caatccatat
     3241 cgaaattggt tccggtaaag gtcaatttat tagtggcatg gcaaaagcaa atccggaaat
     3301 taactatatt ggtatcgaaa tgatcgaaag cgtgctcgtt tcggcgctcg ataaagcgat
     3361 tgaagcggac gtccctaatt tacgattagt tgctagagat gctaaattac tagaagaatg
     3421 ttttgaaaaa ggagaaatag cacaaattta tttaaacttc tccgatccat ggccgaaaaa
     3481 acgccataca aaacgtagac taacgaatcc aacgttctta actatttatg agcgactgct
     3541 accggaagcg ggggagattc atttcaaaac cgataatcgc agtttgttcg aatattcgct
     3601 agtagctttc tcagaataca atatgttatt aacttttgta tctcttgacc tgcataatag
     3661 cgattacgaa gggaatatta aaactgaata cgaagaaaaa ttttcagcta aaggattccc
     3721 catctatcgt cttgaagcaa aatttgatag aaattaacaa ggataaccag atgcatctgc
     3781 tgcatctggt ttttattttt aattggaggc gttaaaagtg gattccattc aaattggaaa
     3841 aataaagatt tattggttac gcggagggta tactcatttt gacggtggcg caatgtttgg
     3901 cgttgtacca aaacctttat gggagaaaaa atatcccgca aatgacaaaa atcaattagc
     3961 taacgtaacc gatccgatgt tttttcagta cttagggaaa aattatttaa ttgatagcgg
     4021 gctagggaac agacggctta cagaaaaaca aaaacggaat tacggtgtga cggaagaatc
     4081 gtttgtacta gaagatttgg cgcaattatc tatcgctcca gaagacattg attatgtttt
     4141 gatgacacat ttgcacttcg atcatgtgtt aggcctgacc ggtgtttcgg aagaggggag
     4201 tttttattcc atctttccca atgcggaaat ctggacttcc aaaacggaat gggaggaaat
     4261 gcaacaccca aacattcgtt caaaagcaac atactggcaa gaaaactggc aaacgatagc
     4321 aggacaaatt catacattta ccaaagaaaa agaattcaac gatgcgatta aaatgacgca
     4381 cacaggtgga catagtaatg ggcattcagt tgtatggata gaatcggacg gagaaaaagc
     4441 gatacatatg gcggatattt tcccgacatt tgcgcatcaa aatgtgcttt gggtcactgc
     4501 ttatgatgat tatccaatga cttctatctc tgccaaacaa gaaattttta aacaaacttt
     4561 tggtgaaaat tattggtttt tatcatacca tgacgccaga tttcgagcag ttcaaatgga
     4621 cggaaatgga aaaatagaag ccgaattaaa aatagaacag cgaaattaag aagtgagaag
     4681 tcacttcttt ttttgagggt atttttattt tgtgttataa ttgtatttat aaacgcttta
     4741 aaatagccaa tatgatatcc tgggtagggg gttgtcgtgt ggtatactat aagggggtat
     4801 atatggaaat cgagcaaaag aaagcgctgg taacgcgatt cgctaagata gaaggacatg
     4861 tacgttctat aaaaacgatg acagaagaag agcgtgattt agaaactatt atgcaacaaa
     4921 tagcagcggt gaaaaaagcg atggatgctg ccgcaaaatt aatctacaca gaacaaatga
     4981 aggagttaat tgaacaaggt gaaacagatg aagtggtaat taaaaagaaa atagatagtt
     5041 ttatccgcta aaaaacgact ccccacttgg ggaatcgttt ttatttttta agctaaatat
     5101 acgtcgatga ttgttcctgt gttagcgtct gcgataaatt cgaattgctt cttctcgcct
     5161 tcgcgaatac aagtgattcc gccgtggtaa acgaaagtat caatcgcgaa ttttttgtaa
     5221 tgttgttttt taagttgaat ccaagaacct tcgattggtc cttcttgctt gaatgcatct
     5281 tttacctttt ctaagatgac gtccccagaa attgttttat cgctaagtaa ataatgataa
     5341 acaaggtgtc cagccgctgc tcctgctcca acgcctgcaa tgaaagcttt ccagttcatc
     5401 gcttttcctc cctagtgttt cctattcttt ttaaaagatg ctactacaaa catctctttt
     5461 aatcattata ctacaaattt ttgattataa aaggattttt gaacacgctt tctgtaaaag
     5521 agagaagtga agcgagcgga aacggatatt atttgctata ataaaagaga ttttagacgg
     5581 aaagagatga ttattaatgg aaaaagaaac gttagcgatg tttaaagaat taacggaact
     5641 tcaagggact tcgggtgatg aacatagaat tcgtgctttt atgcgaaaag aacttgaacc
     5701 ggtttccgat gaaattatcc aagacggctt aggtggtatt tttggtgtgc gccacggagc
     5761 ggaaggtggt ccacgcgtcc ttgttgcggc tcatatggat gaagttggct ttatggtaac
     5821 gcaaattaca gaaaatggtc taatacgttt tcaaacaatt ggtggttgga atccgcaagt
     5881 tttacaggca cagcgagtgc aaattatggc gcctaacggt ccggttattg gggtagttgc
     5941 ttctgttcca ccgcatttgt tgtcggaggc tgaacgtagc aaaccaacgg atcctaaaaa
     6001 cttactaatt gatattggtg cggatgataa agcggacgcg gagaaaattg gtatcaaacc
     6061 agggcaattc attgttcctg tggctgaatt cacgccgctt gcgaatccaa agaaaatttt
     6121 agcgaaagca tgggataatc gttatggcgt tggtcttgcg attgaactta tgaaagaatt
     6181 ggaaggcgaa tcgttgccaa atacactttt tgctggggcg aatgtgcaag aagaagtcgg
     6241 tctgcgcggt gcgggcgtaa gtgcgaacat gattaaacca gatttattct tcgcgttaga
     6301 tgctagccct gcaaatgata cgactgggaa taaatcgcaa ttcggtcaaa ttggtcaagg
     6361 tttcttactg cgtatttttg accggacgat gattatgcat cgaggtatgc gtgaattttt
     6421 aatagatact gcggaaacca ataaaattcc ttatcaatat tttgtttcgc caggaggaac
     6481 ggatgctggg aaagtgcata catcgcttag cgggattccg agtgcagtaa ttggtgttcc
     6541 agctagatac attcactcgt ctaactcgat tttacatgtg gatgactatg ctgctgcaaa
     6601 agaaatgatt acaacgctta ttcgcagttt ggataaaacg acctacgaaa caattaaaaa
     6661 caatgcgtga aataataaag aaaccagtaa ttgttgtggg gttgttcctt ttggtggcga
     6721 gtttagtatt cttgctaggc tatgttacgg acctgcctta ttttcgtgat tcagagcttg
     6781 gttggatatg gaccactatg attgctggga tcgtgacatt atttttcggg tatttccacg
     6841 attttttaga aaagaaaaaa gcgcgctcta aagtacggta aaaaagtttg gctccttcgt
     6901 tggggctgga cttttttcat gagcgttatt ctggacgaaa gtgttgttag gcggtaggat
     6961 ttaactagta tgagattaga aggagcgtat ggaaatgaag aaattagaat cagtagaaca
     7021 atttgacgct attaaatcgg aaggcaaatc cgtttttatg tttagtgctg attggtgtgg
     7081 cgactgcaaa ttcatcgaac cagtaatgcc tgaaatcgaa gcggaaaatg aggactttgt
     7141 cttttaccat gttgatcgag atgaatttat tgatttatgt gctgatttag cgatttttgg
     7201 tattccgagc tttttggcgt ttgaagacgg tgaagaagtg gggcgttttg taagtaaaga
     7261 tagaaaaaca aaagaagaaa ttaatgattt tctagctgcg atataaaaag taactgcttt
     7321 ttatggaagg ggaggcactt atggcaaaaa tgactacatt aaaaatgaaa gaaaaacttg
     7381 aaaaagaatt acaagcgccg aatcggcagt tttcatataa tcgagacaat gacacgctaa
     7441 cggttgcgca aaatggtaaa aaagtaactc tgaccatccc gcaaatcatt gcgaactttg
     7501 aaaatgatgg taatgcagcg gtggaaaaaa ttgtttatta tgtggaagag ggttttcggg
     7561 cagcggcggg aaatgttgag ctggaaaata ataaagcgag catctatccg gttgtacgtg
     7621 caacttcttt tcctgatgaa acaaaagctg gagaagcgct gttaacggat gatcatacgg
     7681 ctgaaacgaa aattttctac gcggttgatt tggggaaatc ttatcgtttt attgaagaga
     7741 gtatgcttaa aaaagcacaa ctaacgtata aagaaataag agaagttgct tttaataatt
     7801 tagcgaatct agaaatcccg ctaaaaaaag attctgttaa tggtaatgac ttttatttcg
     7861 ttcgcacaaa tgatggttac gatgctagta gattgttgaa tgaagcgttc cttcgcgaaa
     7921 tgcgcgagaa gttaacgggg gaaatggtgc ttgccgtacc gcatcaagac gttttaatta
     7981 tcggggatat ccaagataat acaggttacg atgttctggc tcatatgacg atggactttt
     8041 ttgcggatgg gcttgtacca attacctctt tgccatttgt ctataataat ggtaaacttg
     8101 aaccgatatt tataatggca aaaaacagat taaaggagta gaaaacgtga tagtaaacgc
     8161 attttataac aaagaagggg taggggacac tctactaatt gaaacaggcg aagtaacgtt
     8221 tgaaaatcgt gaatgggaac gccgcggtga tgtagcgcga atttttgatc gtgaaacaaa
     8281 agagttggcg ggatataaca tctttaatag ctccaactat tttaatatta ctgcaaatgg
     8341 taaggtggat ttgacggagg aattagtagc gcaaatgaat caagtaattg aaaaagctgg
     8401 attcgaaccg gaaatcgtgg ctgatttatc tcctaaattc gtcgtcggtt atgtggaatc
     8461 gaaagaaaaa catcctaatg cagataaatt aaatgtatgt aaaatcaatg taggggatga
     8521 agtattgcaa attgtatgcg gtgccccgaa cattgacgct ggtcaaaaag tagttgttgc
     8581 aaaaatcggt gcggttatgc caagtggttt aattatcaaa ccatctaatt tgcgaggaga
     8641 agattctttc ggcatggtat gtgctgcgcg tgaacttgcg attcctgatg cgcctacgga
     8701 aaaggggatt atggttctgg aggaatcggc tgtggttgga gaagcttttc ctgttaattt
     8761 ctaaataaat gtttaatttt gagcgtctga tgctatatcg ggcgcttttt tagttgctat
     8821 ttattagata ttgtgaaaac gccttaaatg tagaacgata aaatgttaat tgtatacaaa
     8881 atatgcataa atcgcacaaa aatgaatcaa ttttaccttt ataacaaaaa cttataccac
     8941 gtttgaaccc tctattacca aggtattata acgaatatgg ctcgaaaaaa ggcgaattca
     9001 caattttgtc atagattatt ttgtttttgt ctgttaaaat caaacaagaa aattaaattt
     9061 agggtgataa tgaatgggat ggtttaaaga ttttttcttt ggcgatatgg atgaagaaat
     9121 agatacatac gaagatacgt cttcacgaaa agtagaaaag aaagcaaaac aacgagcacc
     9181 agaagtagtg ccaaaatcaa atgtaacagc aattaaaacg aaagaacgta ctataaggaa
     9241 cgaacgacca gttgcttaca aaacagttcc aaaacaaaaa catatgcaac cagtgaaacg
     9301 acaaatgaaa acgcaaatgg tataccagta tccaaaaggc gaatttcgtt ttccgttaat
     9361 tccagataaa caaaaaagcc aaccaattca accaaaaaaa caaccaataa caaaaagaca
     9421 agcggcagaa acgcaaccag taaaagagga aacaagaaaa cgacctttta cagcgacgga
     9481 tgtaccttcg cctgtttatg cctttaataa acgaccaagt aaatttgagt ttgctgtaac
     9541 agaagcagaa gaacttagta caatacaaga agatttaact attactccag tagatttatt
     9601 agattcagca gaagcggaaa caattgcttt tgacacagag ctaaatcgtc aaatagaaga
     9661 agagattgtg tcagtgccag tgacggaaga agtcattacg gagccaccag aagtgaaagt
     9721 aaccccagaa ccagtagaac agcaagaacc agcacgcgtt tcccttataa cggaagagcc
     9781 ggcgcaaacg aaaacaacta ctagaagcaa acaagtagaa tcaaatagac aagaacaatt
     9841 gctaaaaagc agaattccat ttaatgtcat gatggtaaag aaagacaaac aagcacttcg
     9901 aaaagaagaa gcacaggaaa taaatgggca acaaccagtt gaggtagaag cagaacaaac
     9961 gaatactgtt cgagaagcgc aagtagcgac agtctcttac ccaacgaact atgaatttcc
    10021 gtcgtttagt ttgctccatc cgccagtctc caaacgagaa gacgactcat ggctacaaat
    10081 gcagcaagag atgctagatg aaaccttgga aaatttcaac gtacaagcta gtgtagttaa
    10141 ccgtacacaa ggtccagcag taactagatt tgaagtgcaa cctgaaaaag gcgttaaagt
    10201 tagcaaaatc actaatttaa cggatgatat taaattaaat ttagcagcga aagatatacg
    10261 gattgaggcg ccgatacctg gtaagagtac agtagggata gaaattccga atcagacaag
    10321 tcgtcccgta atgctttctg aattgatgaa tacggaagct tttcagtcat ctacatcacc
    10381 gctcacagcg gcactcgggc tagatatctc gggaacgcca attattactg atttacaaaa
    10441 aatgccccac ggtttaatcg ctggagctac agggtcaggg aaaagtgttt gtatcaattc
    10501 attgctagta agtttacttt acaaagcaac gccagaccaa ttgaaactac ttttgattga
    10561 ccctaagatg gtcgaattag ctccgtacaa ccggatacca catcttgtga gtccagttat
    10621 tacggatgcc aaagcagcta ctgtcgcttt aaaatgggcg gtagaagaaa tggaacgtcg
    10681 ctatcaatta tttagccata caggcgttag gaatatggag aaatataatg aatacgctag
    10741 tcacccagat catacagggg agaaattacc ttatatttta attgtgattg atgaattagc
    10801 tgatttgatg atggttgcgc caaatgatgt agaagaatcc attagccgca tcgcacaaaa
    10861 agcaagagct tgtggcattc atatgattgt agcgacacag cgcccatctg tagacgttat
    10921 tacaggtctc attaaggcga atatccctac acgtgtttcg ttctctgtat cttctcaaat
    10981 cgactctaga acgattttag atgcaagcgg agcagaaaaa ttactcggaa aaggggacat
    11041 gctcttctta ccaagtggtg caagtaagcc agtgcgttta caaggaacct tcgttagtga
    11101 tgaagagatt gatgcagttg ttgctcatgt tcggagtcaa ggcgaggccg attatatctt
    11161 tgaagaacaa gaattacttg taaaagaaac ggcaaaagaa aataccgatg aattatttga
    11221 agaagcgtgt gactttgttt taagccaaaa tgctgcctca acatccttgt tgcaaagaca
    11281 ttttagaatt ggttataacc gagcggcgag attaatggaa tcccttgaaa atcatcaaat
    11341 tgtttctggg ataaatggtt ccaaaccgcg agatgttatt attacaaagg accaattagc
    11401 taagttgcga aacaaagaat
//
LOCUS       DABQVC010000091        11366 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.091,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000091 DABQVC010000000
VERSION     DABQVC010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11366
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.091"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            92..1534
                     /locus_tag="IBJ56_001667"
     CDS             92..1534
                     /locus_tag="IBJ56_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HAM3417921.1"
                     /translation="MKELLTFPKNFWWGSAWSAEQAEGRGDTGKAKTVWEHWFETEPN
                     RFYEGVGSEITTDHFNRYKEDVQWMKKTGQNSFRISISWARMFPNDGVGEVNPKAIAF
                     YRDLLTEMNENGIKPFANLYHFDMPVALQDAGGWESREVVDAYVHFADTCFKEFGDLV
                     YHWFTFNEPLGPILGGYLEDFHYPNQIDFKRGAQAGFNTILAHALAIKAFKKLNLSSK
                     IGVILNLSPTYPRSQNEYDLEAAEICDAFYTRSFLDPMVKGTFPEKLVEIMREYDQMP
                     EYTEEDLTIIKENTAQILGLNYYEPRRVKARLTAINEKSPFLPDWFFEPHNMPGKRMN
                     IYRGWEIYERGIYDLCIDIRDNYGNIESFISENGMGVANEERFLNEEGQIQDDYRIQF
                     VKDHLAYVHQAIAEGCDIKGYHLWTFIDCWSWINAYKNRYGLVSLDVETGKRTMKKSG
                     EFYKKMSDMNGFEYDTSKLVGTKREETTNG"
     gene            1527..2861
                     /locus_tag="IBJ56_001668"
     CDS             1527..2861
                     /locus_tag="IBJ56_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3417922.1"
                     /translation="MAETKKKSIVNGFINVAQRLGGQIHLRSLRDAFASIMPFMILAG
                     FVTLINYVILEPTGFMGKIVNPDTLKTWQEIGISIGNGTLSVITLLVTVAISYHLCLN
                     RGYKNVIAPILVALSSFIVVTPIAMTFLPEGASKSIEVPNVIPVSYTGASGMFVGIIV
                     GLIATDLFIKLSKNKRMQINLTGNIPPAVIKSFNVLIPIMITVIIFSVMSFAVNQIFN
                     MDFNTLVTTIITKPLSYVTTSLPGFLLITSIANLFFGLGIHQAVISGPLLDPFLLQNM
                     QENMVAYANHQEIPHIINMAFKDTFAVMGGSGNTIGLLIAIFIFGKRKDYKDISKLSA
                     APSLFNISEPIIFGLPIVFNPLLIIPFVLAPIFSLTTAYYATAAGWINHVVVQTPWTT
                     PPIISGFLATGGDWRASVLQVIIIVVTVFIYLPFLRMDEKVAFATAQKTEAK"
     gene            2879..3181
                     /locus_tag="IBJ56_001669"
     CDS             2879..3181
                     /locus_tag="IBJ56_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3417923.1"
                     /translation="MKNILLVCNAGMSTSFLVEKMKAAGAEQGVEANIWAVSDAELHE
                     NWEKADVILLGPQVGYLKGNTEKVVGGKIPVEVINMLDYGRVNGAAVLERAIELIG"
     gene            3268..3462
                     /locus_tag="IBJ56_001670"
     CDS             3268..3462
                     /locus_tag="IBJ56_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417924.1"
                     /translation="MKYVKSQMKELVKDSVDLQERLQKLMKEMDLEKTFALKALYHSE
                     VADGGPYQTAYQDLDYKYKD"
     gene            complement(3501..4421)
                     /locus_tag="IBJ56_001671"
     CDS             complement(3501..4421)
                     /locus_tag="IBJ56_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HAM3417925.1"
                     /translation="MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAM
                     ANIPIYTIAGTKGGIGIMPTYKVDKKLLTVDDLTAIIASLDGMEQLLSSAETKKTLQK
                     MKNMLDHSSEPPKSSISLDFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQT
                     IRKTEPYHLLFRNRSWYLQGYSLERSDFRTFKMSRIVELKTLEETFEARPFSVKPFGA
                     PPDRPMFLMHEVNLIVDKIAREQIIERFDLVEISQQDDAHFLAKVTLPDHEAGYRFLL
                     QLGTHVTIQNRDDFYDNFVDYLKEIQGKYI"
     gene            4524..4943
                     /locus_tag="IBJ56_001672"
     CDS             4524..4943
                     /locus_tag="IBJ56_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417926.1"
                     /translation="MAFEIVELKKETFTGNKVEIPEFDPQKGFGPMSEIKESAHTKFA
                     KNEKDYVGINASLDDLQYYIVASAKGENGDTTFDIPEGKYAKFVTSETDRPALDGFIG
                     AAYGEVSQSDTVGIAGSFNLEDLREAEFTLYIPVVSK"
     gene            complement(4992..5753)
                     /locus_tag="IBJ56_001673"
     CDS             complement(4992..5753)
                     /locus_tag="IBJ56_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAM3417927.1"
                     /translation="MKVQRIQAIENLIHEKGSISLDDLCEQFNVSKNTVRRDIAKLLQ
                     KNTIQKVYGGVVSVYNNPEEIRPFENRDTENHTEKQLIGKAAADFIEENDLIFIDSGT
                     TTSCLAAALPTDKDITIITNSLDVINFASEMDNVKLIVIGSTFKTSTKSFVGVENWGF
                     FEKYNITKAFMAATALSTTHGVMNSDILEYEIKRHMMEKATEKFLLVDHTKVDKSALL
                     TYGELAEFDWLVTSKDMAGGCLGYCEDVGVLVRLV"
     gene            5948..7414
                     /locus_tag="IBJ56_001674"
     CDS             5948..7414
                     /locus_tag="IBJ56_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HAM3417928.1"
                     /translation="MADVRKLKNYINGEWVESRADKYEDVINPATGEVLCQVPISTRA
                     ELDQAAVIAEQAFEKWSQVAVPRRARVLFSFQQLLIQHKEKLARLITLENGKNLSEAR
                     GEVQRGIENVEFAAGAPTLMMGDSLASIATDVEAANYRYPVGVVGGIAPFNFPMMVPC
                     WMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYGAHDVVNGILEN
                     EIIKAVSFVGSKPVGEYVYKTGSANLKRVQALTGAKNHTIVLNDADLEDTVTNVISAA
                     FGSAGERCMACAVVTVEEGIADEFLAALRTAAQNVKIGNGLDDGVFLGPVIREENQKR
                     TIAYIEKGLEEGAKLTVDGRETGLSEGHFVGPTILEDVTTDMTIWKDEIFAPVLSVIR
                     VKNLQEAVRVANQSEFANGACIFTNNAKAIRYFREKIDAGMLGVNLGVPAPMAFFPFS
                     GWKSSFYGTLHANGKDSVDFYTHKKVVTARYSLKGYEE"
     gene            7427..8248
                     /gene="iolB"
                     /locus_tag="IBJ56_001675"
     CDS             7427..8248
                     /gene="iolB"
                     /locus_tag="IBJ56_001675"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HAM3417929.1"
                     /translation="MGKLLRKPLNERIAPGITFVQDINQANSPLSYVGFRLIEMEKGA
                     IYQEELTDLECCIVALTGKITVSEGDNIFAEIGTRANVFEKIPTDSVFISGGRTFQVK
                     ADTEKARVALCYSQANRDLPTTLIKASDNSIEQRGKYQNKRLVHNILPDVSEVASSLL
                     VVEVYTDGGNFSSYPPHKHDRDNLPAESLLEESYYHEINPEQGFIFQRVYTDDRTLDE
                     TMAVEHQNAVIVPEGYHPVGVPDGYDSYYLNVMAGPKRVWKFHNDPDHEWILERD"
     gene            8265..9242
                     /gene="iolC"
                     /locus_tag="IBJ56_001676"
     CDS             8265..9242
                     /gene="iolC"
                     /locus_tag="IBJ56_001676"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HAM3417930.1"
                     /translation="MNLNKHSERKFDLITVGRACIDLNAVEYNRPMEETMTFSKYVGG
                     SPANIAIGTAKLGLKVGFIGKISADQHGRFIEKYMRDLSINTDGMVKDTEGRKVGLAF
                     TEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKA
                     VSLARKNDVAVAFELDYRPYTWTNTEETAVYYSLVAEQADVIIGTRDEFDMMENQVGG
                     KNEATKAHLFQHQAEIVVIKHGVEGSFAYTKAGETFQAKAYKTKVLKTFGAGDSYASA
                     FLYGLFSGESIETALKYGSAAASIVVSKHSSSDAMPTADEIKALIAQAE"
     gene            9255..11171
                     /gene="iolD"
                     /locus_tag="IBJ56_001677"
     CDS             9255..11171
                     /gene="iolD"
                     /locus_tag="IBJ56_001677"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HAM3417931.1"
                     /translation="MTEKTIRLTTAQALVKFLNQQYIEVDGEMAPFVDGIFTLFGHGN
                     VVGIGQALEEAPGHLKVYQGKNEQGMAHAAIAYAKQKNRQRIYACSTSAGPGSANLIT
                     AAGTALANNLPVLFLPADTFATRQPDPVLQQLEHESSTAITTNDGFQAVSRYFDRVQR
                     PEQLMSALIRAFEVMTNPASAGPATICIAQDTEGEAFDYPVEFFQKRIHYLNRQIPTK
                     RELTEAARLIKASKTPVIIVGGGARYSRAREELIALSEQTNIPLVETHAGKSTLEFDF
                     KNNLGGTGILGTLAANKAIRDADLVIGIGTRYTDFTTSSKTAFDPTTKFININVSRMQ
                     TYKLDAFQVVGDAKATLAELAPLLKGYQTQFGNKIAAYKTEWLDERARLQTTKFNREA
                     FTPEIKDQFDQATLNEYADRLQTEFTQTEALITINDNVAPDSIVVCSAGSLPGDLQRL
                     WNPAVPDTYHLEYGYSCMGYEINGALGAKMAAAKKQEVYAIVGDGSFCMSHSELLTSL
                     QYGKKINIMLFDNSGFGCINNLQMANGSDSFFCEFRDSDNQIMQVDYAKIAEGYGAKV
                     YRANTKEDLISALEDAKTQSKTTLIEMKVLPKTMSEGYLNWWNVGVSEVSNKESIKQA
                     YEEKQANLKNARLY"
BASE COUNT         3552 a         2175 c         2496 g         3143 t
ORIGIN      
        1 tataaacaaa agtatatatc ttttgataaa agtattgttt tttaaataaa tgtatgctat
       61 atttattttg acaaaaggga ggccataaaa aatgaaagaa ttattaacgt ttccaaaaaa
      121 tttttggtgg ggctctgcgt ggtctgctga acaagcagaa ggtcgcggcg acactggtaa
      181 ggcaaaaact gtttgggagc attggtttga aacagaaccg aatcgctttt acgaaggcgt
      241 aggttcagaa attacaacag atcattttaa tcgttataaa gaagacgtac agtggatgaa
      301 gaaaacagga caaaattcgt tccggatttc gatttcatgg gcgcgaatgt ttcctaatga
      361 tggcgttggc gaagtgaacc cgaaagctat tgcgttttat cgcgatttac ttactgaaat
      421 gaatgaaaac ggtatcaaac cattcgccaa cttatatcat ttcgatatgc ccgtggcact
      481 tcaagatgct ggtggctggg aatcaagaga agttgtagat gcctatgttc attttgcaga
      541 tacttgtttt aaagaatttg gcgatttagt ttatcactgg tttacgttta acgaaccact
      601 aggaccgatt cttggcggct atttagaaga tttccattat ccgaatcaaa tcgacttcaa
      661 acgcggtgca caagctggtt ttaatacgat tttggcgcat gcgttagcta ttaaagcatt
      721 taaaaaatta aacttgtcat caaaaatcgg cgttatttta aaccttagcc cgacgtatcc
      781 acgtagccaa aacgaatacg atttagaagc tgcggaaatt tgtgatgctt tttacacgag
      841 aagcttcttg gatccgatgg ttaaaggaac tttcccagaa aaattagttg aaattatgcg
      901 cgaatacgat caaatgccgg aatacacgga agaagatttg acgattatta aagaaaatac
      961 ggcgcaaatt cttggcctaa attactatga accaagacgc gtcaaagccc gtttaacagc
     1021 aattaatgaa aaaagtccgt ttttaccaga ttggtttttt gaaccgcata atatgccagg
     1081 taaacgaatg aatatttacc gcggttggga aatttatgaa cgtgggattt acgatttatg
     1141 tattgatatt cgtgataatt acggcaatat cgaatcattt atttctgaaa atggtatggg
     1201 tgtggcaaat gaagagcgtt tcttaaatga agaaggacaa attcaagatg attaccggat
     1261 tcaatttgtc aaagatcatt tggcttatgt acatcaagcg attgcagaag gttgcgatat
     1321 taaagggtat catctgtgga cattcattga ttgttggtcg tggattaacg catataaaaa
     1381 ccgttacgga ctcgtttcac ttgatgtcga aactggcaaa cgcacaatga agaaaagtgg
     1441 cgaattttat aaaaaaatga gtgacatgaa cggttttgaa tatgatacaa gcaaactagt
     1501 tgggacgaaa agggaggaaa caactaatgg ctgaaacgaa aaagaagtcg attgttaatg
     1561 gatttattaa tgtagcacaa cgtcttggtg gtcagattca tttgcgttca ttgcgtgatg
     1621 cttttgcgag tattatgccg ttcatgattt tagctggttt tgtcacgctg attaactatg
     1681 ttattttaga accgactggc tttatgggca aaattgttaa cccagataca cttaaaacat
     1741 ggcaagagat tggtatttca atcggaaatg gtacgctgag tgttattacg cttttagtca
     1801 ctgtggcgat ttcgtatcat ttatgtttga atcgcggcta taaaaacgtc attgctccga
     1861 ttcttgtcgc tttatcttct tttattgttg taacaccgat tgcgatgacg ttccttccag
     1921 aaggcgcatc aaaatcaatc gaagtaccga acgttatccc agttagttat actggcgcgt
     1981 caggcatgtt cgtcggtatt atcgttggtt taattgcaac cgatttattc attaaattat
     2041 cgaaaaacaa acgcatgcaa attaatttaa caggaaatat tccaccggca gttattaaat
     2101 catttaacgt gttaattccg attatgatta cggttattat tttctcagtt atgtcatttg
     2161 ccgttaatca aattttcaac atggacttta atacacttgt gacaacgatt atcacgaagc
     2221 cacttagcta tgtgacgaca agtcttccag gcttcttgct gattacttct atcgctaact
     2281 tattcttcgg tttgggtatt caccaagcag ttatttctgg tccgttacta gatccatttt
     2341 tacttcaaaa tatgcaagaa aacatggttg cctacgcgaa tcatcaagaa attccgcata
     2401 ttattaatat ggctttcaaa gacacatttg cggttatggg tggctcagga aacacgattg
     2461 gcttattaat tgccattttc atctttggga aacgaaaaga ttacaaagat atctcgaaac
     2521 tatctgcggc accatcacta tttaacatca gtgagccaat catctttggt ctgccgattg
     2581 tgttcaaccc gttacttatt atcccgttcg tattagcgcc gattttctct ttaacaacag
     2641 cgtattatgc gacagcagca ggttggatta atcatgtagt tgtacaaacc ccgtggacga
     2701 caccgccaat tatttctggt ttcctagcaa ctggcgggga ctggcgcgcg tccgttttac
     2761 aagtaattat cattgttgtg acagtcttta tctatctgcc gttcctacgt atggatgaaa
     2821 aagttgcttt tgctacagct caaaaaacag aagcaaaata aggaaggaag tttaaccaat
     2881 gaaaaacatt ttattagtat gtaatgctgg tatgtccaca agtttcttag tagaaaaaat
     2941 gaaagcagca ggcgcggaac aaggcgttga agcaaatatc tgggctgtat ccgacgctga
     3001 actacacgaa aactgggaaa aagcagatgt cattttgctt ggaccacaag ttggttattt
     3061 aaaagggaac acagaaaaag tagttggcgg aaaaattcct gtcgaagtaa ttaatatgct
     3121 agactacggc cgtgtcaatg gagcggcggt acttgaaaga gcaatcgaat taatcggtta
     3181 aaaaagtaag ggagtgtggc ttatagtcgc gctccttttt tatcggggaa gaaagtgtta
     3241 taatgtgtga aaaggagcgg aattattatg aaatatgtaa aatcacaaat gaaagagctt
     3301 gtaaaagata gcgtagactt gcaagaacgc cttcaaaagc taatgaaaga aatggactta
     3361 gaaaaaactt tcgctttaaa agcactttat cattcagaag tagctgatgg tggaccgtat
     3421 caaacagctt atcaagattt ggattataaa tataaagatt aacatcaaat ggctctgcta
     3481 aacaattagc agagccattt ttagatatat tttccttgga tttcttttaa gtagtcaaca
     3541 aaattatcgt aaaagtcatc acggttttga atggttacat gcgttccaag ttgaagtaaa
     3601 aagcgatacc cagcctcgtg atcaggaagc gttacttttg ctaaaaaatg tgcgtcatct
     3661 tgctgcgaga tttcgactag atcaaagcgc tcgatgattt gctcgcgggc aattttatcg
     3721 acaattaagt tgacttcatg catcaaaaac atcggtctgt cgggtggggc gccaaacggt
     3781 tttacactaa aagggcgagc ttcaaacgtt tcttctagcg tttttagttc aacaatccgc
     3841 gacattttaa atgttcgaaa atcgctgcgt tccaaactgt aaccttgcaa ataccaagaa
     3901 cgattcctaa acaggaggtg ataaggctca gttttacgaa tggtttggtt acccgttcga
     3961 tcaatatagc tgagttctac gagttgatgt tttttaatcg ctaaatataa actttcgact
     4021 ttagcgttta attcgttttt catggacaaa ttggagaaat cgagcgaaat ggaactttta
     4081 ggcggttcgc ttgaatggtc gagcatgttt ttcatttttt ggagggtttt cttggtttcg
     4141 gcggaagaaa gcaactgctc catcccgtcc aaactagcaa taattgcggt taaatcatct
     4201 actgtgagaa gctttttatc gactttgtag gtaggcataa taccgatgcc accctttgtt
     4261 ccggcaatcg tgtaaatcgg gatattcgcc atcgcaagtg tgtcaatatc gcggaaaata
     4321 gtacgtttgg aaacctcaaa cattgtagcc atttcagaag cactgactag ctcgcgttgg
     4381 agaagcagca taatgattcc gatgagtcgc tcgattttca tttttttctc ctttgttttt
     4441 ggaatgatga cagacagttg tcatcattca cgtgttatag ttacatcata tcaaagttaa
     4501 gtaacttttt ggagggaaat attatggcat ttgaaattgt tgaattaaaa aaagaaacat
     4561 ttactggaaa taaagtagaa atccctgaat ttgatccaca aaaaggcttt ggcccaatga
     4621 gcgaaattaa agaatcagcc cacacaaaat ttgcaaaaaa cgaaaaagac tacgttggca
     4681 ttaacgcaag tcttgacgac ctacaatatt acatcgtagc tagtgcaaaa ggtgaaaacg
     4741 gcgacactac tttcgacatt ccagaaggca aatacgcaaa attcgtaaca agcgaaacag
     4801 accgcccagc tctagacggc ttcatcggcg cagcatacgg cgaggttagt caaagcgata
     4861 cggttggcat tgcgggatcg tttaatttgg aggatcttag agaagctgag tttacgcttt
     4921 atattccggt tgttagtaag taaataaatt gagagacccc tttcggtgga gaggggtctt
     4981 ttttcactaa actaaaccaa cctcaccaaa accccaacat cctcacaata ccccaaacac
     5041 ccaccagcca tgtccttcga cgtaaccaac caatcaaatt ccgccaattc cccgtaagta
     5101 agcaaagccg acttatccac cttcgtatga tccactagca aaaatttctc cgtcgctttt
     5161 tccatcatat ggcgcttaat ctcatactcc aaaatatccg aattcatcac cccgtgcgta
     5221 gtagacagcg cagttgcggc cataaaagct ttcgtaatat tatatttctc aaaaaatccc
     5281 caattctcca cgccaacaaa tgatttagta ctcgttttaa aagtcgagcc aataacaatc
     5341 aatttcacat tatccatttc actcgcaaaa ttaatcacat ctaggctgtt cgtaataata
     5401 gtaatatcct tatccgttgg cagagccgca gcgagacagc tagtcgttgt gccggaatca
     5461 ataaaaatca aatcattttc ttcaataaaa tcagccgccg cttttccgat aagctgtttt
     5521 tctgtgtgat tttctgtatc acgattttcg aacggccgaa tttcttcggg attattataa
     5581 acagaaacga cgccaccata gactttttgg atggtgtttt tttggagaag tttggcaatg
     5641 tctcggcgaa cggtattttt ggaaacattg aattgttcgc ataaatcgtc gaggctaata
     5701 ctgccttttt cgtgaattaa attctcaatc gcttgaatgc gttgtacttt cattttaaat
     5761 tcatcctttg gcaaaattat tttaattaca ctatttataa cacatgctca aaaggtaatc
     5821 aactatgatt ttttatggtg aagttagtga caaaaattaa attgactctc taattttatt
     5881 ggcttaagat ggggttataa tcgattaatg gttaacttat gagtaatttt aagtggaggg
     5941 attttttatg gcagatgtac ggaagttaaa gaattatatt aatggtgaat gggtcgagag
     6001 tagggcggac aaatacgaag atgtcatcaa tccggcgacg ggggaagtgc tgtgccaagt
     6061 gccgatatcg acacgcgcag aattagatca ggcggctgtc attgctgaac aagcttttga
     6121 aaaatggagc caagttgctg taccaagacg tgcacgggtt ctatttagtt tccaacagtt
     6181 actcattcaa cataaagaaa aactagcaag actgattaca ctcgaaaatg gtaaaaattt
     6241 atccgaagca cgcggtgaag tccaacgtgg tattgaaaat gtcgagttcg cggctggagc
     6301 gccaacacta atgatgggtg attcgctggc ttcgattgca accgatgtgg aggcggcaaa
     6361 ttatcgctat ccggtcgggg ttgttggtgg aatcgcacca tttaacttcc cgatgatggt
     6421 accatgttgg atgttcccaa tggccattgc gcttggtaac tcgtttattt taaaaccatc
     6481 cgagagaacg ccacttttaa tggagaaatt ggtggaatta ttttctgaag cgggtcttcc
     6541 aaaaggtgta ttcaatgtag tgtacggtgc gcatgatgtg gttaacggaa ttttagagaa
     6601 cgaaataatt aaagcggttt cttttgttgg ttctaagcca gttggtgaat atgtctacaa
     6661 aacagggagc gcaaatttaa aacgagtgca agccttaaca ggtgcgaaaa accatacaat
     6721 tgtgcttaat gatgcggatt tagaagatac cgtgacgaat gttatttcag cggcattcgg
     6781 atcggcgggt gaacgttgta tggcatgtgc ggtcgtcaca gttgaagaag gcatcgcgga
     6841 tgagtttcta gcggcacttc ggacagccgc gcaaaatgtg aaaattggaa atgggttaga
     6901 cgatggcgtt ttcctcggtc ctgtaattcg cgaagaaaac caaaaacgca cgattgctta
     6961 tattgaaaaa ggcttggaag aaggcgcgaa attaacagta gatggtcggg aaactggact
     7021 ttcagaaggg cactttgttg gtccaacaat tttggaagat gttacgacgg atatgacgat
     7081 ttggaaagac gagattttcg caccagtttt atccgtgatt cgtgtgaaaa atctccaaga
     7141 agcagttcgg gttgcgaatc aatctgaatt tgcaaatggc gcttgtattt tcacaaataa
     7201 tgccaaagca attcgctact ttagagaaaa aatcgacgct ggaatgcttg gtgtgaattt
     7261 gggcgtacct gctccaatgg cgtttttccc gttttctggt tggaaatcgt ccttttatgg
     7321 aacgcttcat gctaacggca aagacagcgt ggatttttac acgcataaga aagttgtcac
     7381 agcgagatat tcattaaaag gttacgaaga ataggagggc gcaaaaatgg gcaaactgtt
     7441 acgaaaaccg ttaaatgaga gaatagcgcc tggcattacg tttgtgcagg atattaacca
     7501 agctaattct ccgctaagtt atgttggttt tcgcttaatt gaaatggaaa aaggtgctat
     7561 ttatcaggag gagcttactg atttagagtg ttgtattgtt gcgcttactg ggaaaattac
     7621 agtgagtgag ggtgacaata tttttgcgga gattgggaca agagcgaatg tctttgaaaa
     7681 aattccgaca gatagcgtgt ttatttctgg cggacggacg tttcaagtga aggcggacac
     7741 agaaaaagct cgtgtagcgc tttgctactc ccaggcgaat cgagacttgc caacgacact
     7801 tattaaggct agtgataatt cgattgagca gcgcggaaaa tatcaaaata aacgactggt
     7861 acataacatt ttgccagatg taagtgaggt tgcgagcagt ttgttggttg tggaagtgta
     7921 tacggatggc ggaaattttt cgagttatcc gccgcataaa catgaccgcg ataatctgcc
     7981 agcggagtcg cttttggaag aaagttatta tcatgaaatt aatccggagc aaggttttat
     8041 ttttcaacgt gtctatacgg atgaccggac gcttgatgaa acgatggctg tggagcatca
     8101 aaatgcggtt atcgttccag aaggctatca cccagttggc gtgccagatg gatatgattc
     8161 atattatttg aacgtaatgg ctggaccgaa acgggtttgg aaatttcaca acgatccgga
     8221 ccatgaatgg attttagaac gagactaaga ggaggatttg gagcatgaat ctaaacaaac
     8281 atagcgaacg aaaatttgat ttaatcacag taggacgcgc ttgtattgat ttgaacgcag
     8341 tcgaatacaa tcgtccaatg gaagaaacga tgactttttc taaatatgtg ggtggttccc
     8401 cggcaaatat tgcgatagga accgcaaaac taggcttaaa agtaggtttt atcggcaaaa
     8461 tttctgctga tcaacatggt cgttttattg agaaatatat gcgtgatttg agtataaata
     8521 cggacggaat ggtgaaagat acggaaggcc gcaaagttgg cttggcgttt acggaaatta
     8581 aaagcccaga tgaatgcagt attttgatgt atcgcgaaaa tgtagcggat ttgtatttaa
     8641 cgccagaaga aatttcggaa gattatataa aagaggctcg cgtgctgctc atttctggaa
     8701 cagctttagc gcaaagtcca tcgcgggaag ctgttttaaa ggcagttagt ttagctcgga
     8761 aaaatgatgt agccgttgct tttgaattag attatcgccc ttatacgtgg acaaacaccg
     8821 aagaaacggc ggtttattat tcacttgtcg cagaacaagc ggatgtgatt attggcacgc
     8881 gcgacgaatt tgatatgatg gaaaatcaag tcggtggcaa aaatgaagca acaaaagcgc
     8941 atcttttcca acatcaagca gaaattgttg tcattaagca tggggtggaa ggctcattcg
     9001 catatacaaa agcgggagaa acattccaag caaaagcata taaaacaaaa gtgctcaaaa
     9061 cattcggcgc gggagattcc tacgcatcag ccttcttata cggtttattt agcggtgaaa
     9121 gtatcgaaac agcccttaaa tacggaagtg ccgcggcttc gattgttgtt agcaagcata
     9181 gttcctcaga cgcgatgcca acagctgatg aaatcaaagc gctcattgcg caagcggaat
     9241 aggaggagat tatggtgact gaaaaaacga ttcgactaac aaccgcacaa gctttggtaa
     9301 aatttttaaa tcagcaatat atcgaagtgg acggcgaaat ggcaccgttt gtggatggta
     9361 ttttcacgct gtttggacat ggaaatgtgg ttggtatcgg gcaagccttg gaagaagccc
     9421 caggtcattt aaaagtgtat caagggaaaa atgagcaggg catggcgcac gcggcaatcg
     9481 cttatgcaaa acaaaaaaat cgccagcgca tctacgcgtg ttccacatca gcaggaccag
     9541 gttccgcgaa cttaataaca gcagccggca ccgcacttgc gaataattta cccgtgttat
     9601 tcttgccggc cgacacattc gcaaccagac agcccgaccc agtcttgcaa caattagagc
     9661 atgagtcgag cacggcaatt acaaccaatg atggcttcca agcagtctcc agatattttg
     9721 accgtgtgca gcgaccagaa caactcatga gcgccctgat tcgcgctttc gaagtaatga
     9781 ccaacccagc gagcgcggga ccagcaacaa tctgcattgc gcaagacaca gaaggagaag
     9841 cattcgatta tccagtcgaa tttttccaaa aacgaattca ctatcttaat cggcaaatcc
     9901 cgacaaagcg tgaactaacc gaagcagctc ggctcatcaa agcgagcaaa accccagtta
     9961 tcatcgtcgg aggtggcgcc cgctattcaa gagcacgcga agaattgatc gccctttccg
    10021 agcaaaccaa cattccgctc gtcgaaacac atgccgggaa atcaacgctt gagtttgact
    10081 tcaaaaacaa cctaggtggc acgggaatcc tcgggacgct tgctgccaat aaagctatcc
    10141 gtgacgccga tttagtcatc ggaattggca cgcgctatac cgatttcaca accagttcca
    10201 aaacggcatt cgatccaaca accaaattta tcaatatcaa tgtcagccgt atgcaaacat
    10261 acaaattaga tgccttccaa gttgtcggtg acgccaaagc aaccctagcc gaactagcgc
    10321 cacttttaaa aggttatcag acccaatttg gaaacaagat agccgcatac aaaaccgagt
    10381 ggctagacga aagagcacgg ctacaaacca ccaaattcaa ccgagaagca tttacgccag
    10441 aaatcaaaga tcaattcgac caagcgacct taaacgaata tgcagaccgc ttgcagaccg
    10501 aatttacgca aacagaagca cttatcacaa ttaatgacaa cgtggcaccg gatagcattg
    10561 tcgtttgttc ggccggttca cttcccggag atttgcaacg actctggaac ccggccgtac
    10621 cagacaccta tcacttagaa tatggctatt cctgcatggg ctacgaaata aacggtgctc
    10681 tcggcgcgaa aatggccgca gcaaaaaaac aagaagtata cgccatcgtt ggcgacggca
    10741 gcttctgcat gtcacactca gaactactaa catccttaca atacggcaaa aaaattaaca
    10801 ttatgctctt cgataattcc ggttttggct gcattaacaa cctccaaatg gcaaacggca
    10861 gcgacagttt tttctgcgaa ttccgcgata gcgacaacca aatcatgcaa gtcgattacg
    10921 ccaaaattgc agaaggatac ggagcaaaag tctatagagc caacacgaaa gaagatttaa
    10981 tcagcgcact ggaagacgca aaaacacaaa gcaaaactac tttgatcgaa atgaaagtac
    11041 taccaaaaac tatgtcagaa ggctatctta attggtggaa tgtgggagtt tccgaagttt
    11101 caaacaaaga aagtatcaag caagcatacg aagaaaaaca agcaaacctg aaaaatgccc
    11161 gactatatta agcaaaacaa aaacaagtcc atcaccggac ttgtttttgt tttgccactt
    11221 caatagcccc gccttgcatc acaccagttt ttctttataa taaaaagtaa ctgtaagatt
    11281 atgttttttt aggaggaaat aatatggaag tttttgcaga atatttagct gaaattgaaa
    11341 atccggatca ccgcgcgaga acacaa
//
LOCUS       DABQVC010000092        11314 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.092,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000092 DABQVC010000000
VERSION     DABQVC010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11314
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.092"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(54..1784)
                     /locus_tag="IBJ56_001678"
     CDS             complement(54..1784)
                     /locus_tag="IBJ56_001678"
                     /EC_number="1.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate oxidase"
                     /protein_id="HAM3417932.1"
                     /translation="MKKVKASETLVQTLKNWGIDHVYGLPGDSIDTVVDALRKEQEAI
                     EFIHVRHEEVATLAAAAYTKLTGKIGVALSIGGPGAIHLLNGMYDAKMDHVPMLVLAG
                     QVTTDVLNTGFFQEVNLPAIFEDVAVYNKQIDNAETLADVVDEAIRTAYKEKGVAVLT
                     IPNDIPSQVIKASLEAKTVKFEQENPKLDEAAIQEAVARIEKAEKPVILAGLGTKHAG
                     PELIAFSEKLKIPIIHSLPAKTIVPDNHPNALGNLGKIGTKPAYEAMQETDLLLMFGN
                     DYPYSDYLPKKADCIQIDIDPAKISKRFPATVGLVGDAAEIIGNLTAKTAPVEERKFL
                     QACQENMQEWWKWLEEDIAQTTDPIAPEVVMANIQKIADKDAIFSIDVGTATVWSTRY
                     LHLTPQNDFIVSAWLGTMGCGLPGAIAAKKAFPDRQAIAIVGDGGFSMVMQDFVTAVG
                     LNMPMIVVVLNNQQLSFIKYEQQSAGELNYAIDLPDINYAKFAESCGGIGFRVEKMAD
                     LEAAFENAKLATKPVIIDVSVDSAAAPLPGKIVMDEALGYTKFEIQSVLEDHRFAKMP
                     PLKTILRRFL"
     gene            2055..2702
                     /locus_tag="IBJ56_001679"
     CDS             2055..2702
                     /locus_tag="IBJ56_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G-binding protein"
                     /protein_id="HAM3417933.1"
                     /translation="MKEFIEPYQYNFIKNQLANVSRAYRSANDTSTLKALKSLTEEKI
                     NELFPESVLEEHKELFSELHAITSTKEAEPFLDGLKAYVIPFAPPSDVKLKKLFAKTK
                     KLKIPAWSKLDLRDYTFYGWNDIAQQRKYIVTYEDGNLVGVQGTISTEIQKGVCSICH
                     SHSKVSLFMAKTKSSSDGIYTTNGNYICYDSDVCNQQIKTHETLDEFIEVVKKRK"
     gene            complement(2745..3068)
                     /locus_tag="IBJ56_001680"
     CDS             complement(2745..3068)
                     /locus_tag="IBJ56_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1048 domain-containing protein"
                     /protein_id="HAM3417934.1"
                     /translation="MFNWYKKYREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFA
                     KGAGMFEILKNVLEMFENAAADNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKL
                     RDSIK"
     gene            complement(3068..3394)
                     /locus_tag="IBJ56_001681"
     CDS             complement(3068..3394)
                     /locus_tag="IBJ56_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HAM3417935.1"
                     /translation="MKGLTELLKGSLEGMILERISRGETYGYEITKYLNDLGFDEIVE
                     GTVYTILVRLEKKGLVEIEKKKSELGPPRKFYTLSPAGEEELAIFWKRWDFIQGKIMQ
                     VKGGQA"
     gene            complement(3513..4157)
                     /locus_tag="IBJ56_001682"
     CDS             complement(3513..4157)
                     /locus_tag="IBJ56_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417936.1"
                     /translation="MGNWQQKWESWRDMTAAMQQEIKIEAAEKVTSYIKNDQFEEAIN
                     VIRQTENLLNELDFETKMNRVEEQLQAFTSDQEAAKSFEASQLQNLEKPSTKVSFDLS
                     HVKSEAINQFTKRDFNLVDSNDTHMQFLKGNRNFYMDIFNPEESEEYHYANLDEKCQY
                     KNIGFICQNDAAAEIATKLTNEWLETLEAPKKKFLTVNIANLNAMKQNQEVLFQ"
     gene            complement(4171..4839)
                     /locus_tag="IBJ56_001683"
     CDS             complement(4171..4839)
                     /locus_tag="IBJ56_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HAM3417937.1"
                     /translation="MNPVEQVISARQAEFQSAFEAAKQSATTFETKLNERLNETTTAK
                     TTSVQTVTDAELTRAREAYEALINQSDTNSAASASSTTTETPTTSTGESTNWNNYQIK
                     PISAENEGKYSDLIKTSAAKYGVPEALIKRVIQVESNFNPNVVSSAGATGLMQLMYGS
                     NRTDPATNIDAGTKQLAGYIKKYDGDLKLALAAYNAGPGNVRKYGGVPPFKETQNYLT
                     KIIG"
     gene            complement(4856..6157)
                     /gene="fliI"
                     /locus_tag="IBJ56_001684"
     CDS             complement(4856..6157)
                     /gene="fliI"
                     /locus_tag="IBJ56_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HAM3417938.1"
                     /translation="MNWSPKTEAWQELKNTVPYIQKGKIHTVQEQVYISKGPQVKIGD
                     TVMVGENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVL
                     NASGDILNEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKI
                     GIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEDGLRKSVIVA
                     ATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPIG
                     GKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTR
                     ELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQT
                     SDNAAIFTSKEKSYFIHQFLKQLRDESVTLEETSKLMETLV"
     gene            complement(6154..6846)
                     /locus_tag="IBJ56_001685"
     CDS             complement(6154..6846)
                     /locus_tag="IBJ56_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein H"
                     /protein_id="HAM3417939.1"
                     /translation="MSLSNPRIPKGKVTLSDVKMELFYLDDIEETEEVESPYSKELEQ
                     LESHQKELEKHLSAIEIEQQKLANEKAALQAERQAIEELKREAETEIEANKQAFEKEK
                     TQMYLTITDFLWDESIDLAERIVHQAIDTRQIEVLPMLTEVIQKLPVAFDKLNVTTHP
                     ETLKALKEENTGTKYDWLLENIHWNFDMRLDYGEFTVEEEKEYFDYRITEIFQTLHKQ
                     NAERKILGGDKP"
     gene            complement(6833..7939)
                     /gene="fliG"
                     /locus_tag="IBJ56_001686"
     CDS             complement(6833..7939)
                     /gene="fliG"
                     /locus_tag="IBJ56_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HAM3417940.1"
                     /translation="MAETLKETLEETNAELETVEVEETEEKTTTSADSGISRREKAAL
                     IIWSLDEQIATEVVDLLPDASKQRLAREMAKMKEMDGGAVEEATREFLGELELLSGGI
                     AKLDREHLQRLFPDMTTEELNQLIYGVEAESRIGETALDILREIDDVDSLFTIISDES
                     PQTIAMIASYMKPEEASKLLALLPEEKMINTVIGIASLEQFDSEVMQNVSNLLRIKLD
                     TMSNSSLNKTDGIKNVANILNNVTRGLERTIFEHLDAEQAELSERIKEKMFMFEDIIL
                     LDNMTLQQVLAEIQDNNKIARALKNEKEELKEKILSCVSKNRRDMITEELEVLGPIRL
                     SDVEQAQQDIANVVKNLEKDGKIVIQRGEQDVLI"
     gene            complement(7942..9594)
                     /gene="fliF"
                     /locus_tag="IBJ56_001687"
     CDS             complement(7942..9594)
                     /gene="fliF"
                     /locus_tag="IBJ56_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body M-ring protein FliF"
                     /protein_id="HAM3417941.1"
                     /translation="MAKIKTMYSKLKNWHKGAILVGLFVVVTVLLLYMNTPKTEVTLY
                     KNLSETSQQQVTDQLAKMGVDYTVDKSGNILVDEKVETLVRDKFADLGIPYTGQDGND
                     ILLNSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTTIDSASVQLTLPESSSIFEEAS
                     QKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTKNGVISEADTSK
                     EEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFDEIKQNTEHY
                     PNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYTSEKSSETT
                     NYELDSTIQEIKKHPALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGLTPNMTTE
                     EAGADGEAAAAPTFEGTFQNGDVTIMPIQFLDNATPAEKDTTEKAAPASKAWIWWLAG
                     SLLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFNFQTDAF
                     DLSEPELKARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE"
     gene            complement(9662..9958)
                     /gene="fliE"
                     /locus_tag="IBJ56_001688"
     CDS             complement(9662..9958)
                     /gene="fliE"
                     /locus_tag="IBJ56_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HAM3417942.1"
                     /translation="MAIESINAASVLPKVTLGETAKTDNATGAGNTFTQMLDSMSDTQ
                     SNAQTSVSNLLTTGEGNASDVLIQMKKAESEMKTAAVIRDNVIESYKQLLNMQV"
     gene            complement(9975..10385)
                     /gene="flgC"
                     /locus_tag="IBJ56_001689"
     CDS             complement(9975..10385)
                     /gene="flgC"
                     /locus_tag="IBJ56_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HAM3417943.1"
                     /translation="MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKR
                     VVLSEITPFETALTGTKGVKVSEISSDTGSVKRVYDPTHPNANEAGYVNYANVDMTAE
                     MTNLMVGQKMYAANTSALQANEKMMEKDLEIGKV"
     gene            complement(10397..10798)
                     /gene="flgB"
                     /locus_tag="IBJ56_001690"
     CDS             complement(10397..10798)
                     /gene="flgB"
                     /locus_tag="IBJ56_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HAM3417944.1"
                     /translation="MENYTTHIGNYLNYLQTANQVVSNNIANANTPNFKASEASFEES
                     FGSSLRASGQNSIESAGNLTKTNTKHLAGTDIDETNAKVTTKSGSINEDGNNVNVTSE
                     MISLTKNNQMYALAISALNYNSSINTAARGK"
     gene            complement(10819..11100)
                     /locus_tag="IBJ56_001691"
     CDS             complement(10819..11100)
                     /locus_tag="IBJ56_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417945.1"
                     /translation="MNQAKTHLVELKALFHSTGQLNVSLEEYQAKLNELLKSTEHLPK
                     DTKEAILKETREVINKGILFTQKQLESTENAFSENKSRNAANLNYAKFF"
     gene            complement(11072..>11314)
                     /locus_tag="IBJ56_001692"
     CDS             complement(11072..>11314)
                     /locus_tag="IBJ56_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliS"
                     /protein_id="HAM3417946.1"
                     /translation="LILDKMEKIFEELKLQLNPEAGQELYDNIFGLYEWISEQIRQMQ
                     LLKQPVNIDTIIHVITQLKEGYEGVMKHESSKDTFG"
BASE COUNT         2621 a         2225 c         2343 g         4125 t
ORIGIN      
        1 attagcgaaa atcggcatga aacgggtgat aatgttattt ttttatttat tttttataaa
       61 aatctgcgta aaatggtttt aagtggtggc atttttgcga aacgatggtc ttctaagact
      121 gattggattt cgaatttagt ataaccgagc gcttcgtcca tcacgatttt accaggtagt
      181 ggagcggctg cactgtccac ggaaacgtcg atgattactg gcttcgttgc tagtttagcg
      241 ttttcgaaag cagcttctag gtccgccatt ttttctactc ggaaaccaat tcctccacaa
      301 ctttcggcga attttgcgta attgatgtct ggtagatcga tggcgtagtt tagttcacca
      361 gctgattgtt gttcatattt aatgaatgaa agttgttggt tgtttaacac gacgacaatc
      421 attggcatgt ttaaacctac tgcagtgacg aaatcttgca tgaccatgga aaagcctcca
      481 tcaccgacga tggcgattgc ttggcggtct gggaatgctt ttttggcagc gatagctcca
      541 ggtaaaccgc agcccatagt accaagccac gcggaaacga taaagtcatt ttgtggggtt
      601 aaatgtaaat aacgagtgct ccaaacagtt gcagttccta cgtcgataga gaaaatggca
      661 tctttatcag cgattttttg gatgttcgcc atcacgactt ctggggcgat tggatcggtt
      721 gtttgtgcga tgtcttcttc taaccatttc caccattctt gcatgttttc ttggcatgct
      781 tgaaggaatt tacgctcttc tacaggtgcg gttttcgcgg ttaaattacc gatgatttct
      841 gcggcatcgc caactaaacc aactgttgca gggaaacgtt tgctgatttt ggctgggtca
      901 atatcgattt ggatgcagtc ggcttttttt ggtaaataat cgctataagg gtaatcattc
      961 ccgaacatta atagtaagtc agtttcttgc atagcttcat atgctggttt ggttccgatt
     1021 ttaccaaggt ttccgagtgc atttggatgg ttatctggaa caatggtttt tgctggtaag
     1081 gaatgaataa tcgggatttt caatttttct gagaaggcga ttagttctgg tccagcgtgt
     1141 ttagtcccta atccggctaa gataactggt ttttccgctt tttcaatccg tgctacagct
     1201 tcctgtattg ccgcttcatc tagttttgga ttttcttgtt cgaatttgac tgtttttgct
     1261 tcaaggctcg ctttaattac ttgtgacggg atatcatttg gaatcgttag gacagcgacg
     1321 cctttttctt tataagcggt gcggattgct tcatcaacca catccgcgag tgtttcggca
     1381 ttatcaattt gtttattata cacggcaaca tcttcaaaaa tcgctggtaa attgacttct
     1441 tggaaaaagc cggtgtttaa gacgtcggtt gtcacttgcc cagcgagtac gagcattggc
     1501 acatgatcca tttttgcatc atacatgccg tttagaagat gaattgctcc ggggccgccg
     1561 atagataatg cgacaccaat tttgcctgtt aatttggtat atgctgctgc ggcgagtgtc
     1621 gccacttctt cgtgccgaac gtgaataaat tcgattgctt cttgttcttt tcgtaaggca
     1681 tcaactactg tatcaatcga atcaccaggt aaaccatata cgtggtcgat cccccaattt
     1741 tttaatgttt gtacgagtgt ttcacttgct tttacttttt tcattttact ttctcctccc
     1801 atggatgttt tctctaatgt ccaatagttt tcgtttaccc tgtttttaaa agagtattca
     1861 taaaagagaa ttgacgaact attcagaagt gcttataatg aaggcaaggt ggtgatcaaa
     1921 gagatgcaaa caaaattgca ctgctctcga ctttctaaca atggctttag gattgtttag
     1981 aaagtaagag tgaaataaac tcttcaatcc ttcagctagt ttaaccaaca ttaaactatt
     2041 aaaggagaat tataatgaaa gagtttatcg agccatacca atataatttt atcaaaaatc
     2101 aattagccaa tgtttcacgc gcataccggt ccgccaatga tacttcgact ttgaaggcgt
     2161 taaaatcgtt aacagaggag aaaatcaatg aactattccc ggaaagcgtg ctagaggagc
     2221 ataaggaact gtttagcgag ctccatgcga ttacttcaac caaagaagca gagccgtttt
     2281 tagatgggtt aaaagcctat gtgattcctt tcgcgccacc tagtgatgtg aaacttaaaa
     2341 aactttttgc gaaaacgaaa aaattaaaaa ttcccgcctg gtctaaacta gatttgcgcg
     2401 actatacttt ttacggctgg aatgatatcg ctcagcaacg taaatatatc gtgacttacg
     2461 aggacggaaa tttggtcggc gtacaaggaa ctatttcgac agagattcaa aagggtgttt
     2521 gttcgatttg tcactcgcat tccaaagtat cgctctttat ggcgaaaacg aaatcttcga
     2581 gtgacggcat ttatacgaca aatggtaatt acatttgcta cgatagtgat gtgtgtaatc
     2641 agcaaataaa aacccacgaa acgttagatg aatttattga ggttgttaag aaacgcaaat
     2701 aaaaaacaga aagtctctca tttttttgag aggctttctg ttttttattt aatcgaatct
     2761 cgcaatttct gacgttgttt atccatccat gtttcttccg gaaattcact tagtaagttg
     2821 tcggcgaatt ccgctaggtc atctcctaca acggctttta attctaggtt gtcggctgcg
     2881 gcgttttcga acatctcgag tacattcttt aggatttcaa acatcccagc gccttttgca
     2941 aagttccata aataggtttc gatagctttc attgcggttt tgtaatcttc tggcaaagcg
     3001 gctattcgtt ttttgtactg tttgtaatct cgtttttctt cgcggtattt tttgtaccaa
     3061 ttaaacatta cgcttgccct cctttaacct gcatgatttt tccttgaata aaatcccaac
     3121 gcttccaaaa aatagctagt tcttcttcac cagctgggct caatgtgtaa aattttcgtg
     3181 gtggacctaa ttctgatttt ttcttttcta tctcgactaa tccttttttc tccagacgaa
     3241 cgagaatggt gtagacggtt ccttcgacga tttcatcaaa gcctaggtca ttgaggtatt
     3301 tggtgatttc gtagccgtat gtttctcctc tagaaatccg ctccaaaatc attccttcta
     3361 aactaccttt gagtaactcg gttagtcctt tcacttgaat tcactcctct actagttgtt
     3421 actaggtaca agtatatagt aatacaaagt aggttagttg tcaacctgtt tgtataaaaa
     3481 aacctgctct ctttggcgag aacaggtttt ttctattgaa aaagtacttc ttgattttgt
     3541 ttcatcgcgt ttaaattagc aatgttgacc gttaaaaatt tctttttcgg agcttctaaa
     3601 gtttcgagcc attcgtttgt taattttgtt gcgatttcag ctgctgcatc gttttggcaa
     3661 atgaagccga tgtttttgta ttggcatttc tcatcaagat tagcgtagtg gtattcttcg
     3721 ctttcttcgg gattgaaaat gtccatataa aaatttcgat tgcctttgag gaattgcatg
     3781 tgggtatcat ttgagtctac taggttgaaa tcgcgtttgg tgaactgatt gatcgcttct
     3841 gattttacat gtgataggtc gaagcttact tttgtgcttg gtttttctaa gttttgaagc
     3901 tggcttgctt caaatgattt agctgcttct tggtcggatg tgaatgcttg gagctgttct
     3961 tcgacacgat tcattttagt ttcaaaatcc agttcgttta ggagattttc ggtttgtctg
     4021 atgacgttaa ttgcttcttc aaattggtca ttttttatgt aggaagtcac tttttcggct
     4081 gcttcaattt taatttcttg ttgcattgct gcagtcatat cgcgccatga ttcccacttt
     4141 tgttgccagt ttcccatggt ttattctccc ttacccaata attttcgtta aatagttttg
     4201 tgtttctttg aatggtggta cgccgccata tttgcggaca tttcctggcc cagcattata
     4261 agctgctaat gccagtttga gatcgccatc atatttttta atataacctg ccaattgttt
     4321 tgttccagcg tcgatattag ttgctgggtc tgtacgattc gagccgtaca tcaactgcat
     4381 taaacctgtt gcaccagcac ttgatacaac gttcgggtta aaattggatt ctacttggat
     4441 gactcgtttg atgagtgctt ctggaacgcc atatttcgcg gccgaagttt taattaaatc
     4501 actatatttt ccttcatttt ccgcactgat tggtttgatt tggtagttgt tccagtttgt
     4561 tgattcgcct gttgatgtag tgggagtctc ggttgttgtg cttgaagcag acgcggcaga
     4621 attggtgtcg gattgattga ttaatgcttc atatgcttct cgagcgcgcg taagttcggc
     4681 atctgtgaca gtttgtacac ttgttgtttt ggcagttgtg gtttcattta agcgttcgtt
     4741 taattttgtt tcaaaagtgg tagccgattg tttcgctgct tcgaacgcgc tttgaaactc
     4801 ggcttgtcta gcacttatta cttgttctac tggattcatc cacggcactc ctttgttata
     4861 ctaacgtttc catcaactta ctcgtttctt caagcgtgac actttcatcc cgcaattgtt
     4921 ttaaaaattg atggatgaaa taagactttt ctttacttgt aaaaatcgcc gcattgtcgc
     4981 tcgtctgttc gattgtacca agtttgaaat atagttcatt ttcttgataa atactcatcc
     5041 attcgcgaat tttcgaagct gttttccact ggctttctgg aacaatttct tccattaccc
     5101 gactaacgga gccgaggaca tcaatggcag gatagtggtt tttggtggcc agttcacgtg
     5161 tgagaacgat atgtccatct aaaatccccc gcgctagatc ggggactgga ccattcatat
     5221 catctccatc aacaagcact gtataaatac cagtgatcga gccgttttgc gttttacctg
     5281 aacgttctag caatttcttc atatatgatt ccattagcaa ggttttgccg ccgattggta
     5341 agtctttgac ggcgatatcg acgcttcttc ttgcatcagc aaaacgagtg acagaatcca
     5401 tcattagaag gacggttttt ccttggtcgc ggaaatgctc ggcaatagaa gtggctagtt
     5461 tggcggcgcg tagttgcata agatggcttt cgtccgaggt agcagcaaca atcacgcttt
     5521 tgcgcagtcc gtcttctcca agatccttac gcaagaaatc ttttacttca cgcccacgct
     5581 cgccgactaa gccgatcaca ttaatgtctg ctttggcgtt acgagcaatc attccaagta
     5641 aagtagattt accaacaccc gatccggcga aaataccaat tttttgaccg attccaatcg
     5701 ttaacatccc gtcaattgct ttgatgcctg tttcgagcgt atcagtgatt tctgctcgac
     5761 taaaagcatg aattggtgga gcttcaagcg gcattttttg tttaaattta gccactccag
     5821 cttcttcgtt taaaatatcg ccggatgcgt tgagtacttt tccaaggagg tattcgtctg
     5881 ccgggattgt aattttcgta tccgttacgt acacccaatc accgtatgcc actttgtcgc
     5941 tttgattaaa cgggagtagc atgttgtttt ctttttcaat agaaattact tcgcagagca
     6001 ctttattttc accgaccatg acagtgtcac caattttcac ttgagggcct ttggaaatat
     6061 agacttgttc ttggactgtg tgaatttttc ctttttggat gtatggaacg gtgtttttta
     6121 gttcttgcca agcttcggtt tttggcgacc agttcacggt ttatcgcctc ctagaatttt
     6181 ccgttcggca ttttgtttat gaagtgtttg gaaaatttcg gtgatgcggt agtcaaagta
     6241 ttccttttct tcttctacag taaattcgcc gtaatcgagt cgcatatcga agttccaatg
     6301 gatattttct aaaagccagt cgtattttgt gcctgtgttt tcttctttta gagcttttaa
     6361 ggtctctgga tgggtggtga cgtttagttt gtcgaaagca actgggagtt tttgaatgac
     6421 ttcagttagc attggtaaga cttcgatttg gcgggtgtcg attgcttggt ggacgattct
     6481 ttctgcaaga tcgatacttt catcccaaag gaaatcggtg atagttagat acatttgtgt
     6541 tttttctttt tcaaaagctt gtttgtttgc ttcgatttct gtttcagctt cgcgttttaa
     6601 ttcttcaatg gcttggcgtt cagcttgaag tgctgctttt tcgttagcta atttttgctg
     6661 ttcgatttcg atggcagata ggtgtttttc cagttctttt tgatgacttt ctagttgttc
     6721 aagttctttc gagtagggtg actcgacttc ttctgtttct tctatatcat ccaaataaaa
     6781 cagttccatt ttcacgtcgg ataaagtgac tttacctttt gggattcgcg gattagataa
     6841 ggacatcctg ttccccccgt tggataacta ttttgccatc tttttccaga tttttaacaa
     6901 cattggcgat atcttgttgg gcttgctcga cgtcagaaag tctgattggg ccaagaactt
     6961 ctaattcttc ggtaatcata tcgcgacggt ttttcgatac gcaagataga attttttctt
     7021 tgagctcttc tttttcgttt ttgagtgctc gagcgatttt attgttgtct tgaatttctg
     7081 ccaacacttg ttgcaaggtc atgttatcaa gtagaataat atcttcaaac ataaacattt
     7141 tctctttgat gcgttcggaa agttcggctt gttcggcgtc gagatgttcg aaaattgtac
     7201 gttctaaacc tcgggtaaca ttgtttaaga tatttgcgac attttttatg ccatctgttt
     7261 tgttcagtga gctattcgac atggtatcga gcttaattct tagtaaatta gaaacgtttt
     7321 gcatgacttc gctatcgaat tgttctaggc tcgcgatacc aataacagtg ttaatcattt
     7381 tttcttccgg tagtaaggct agtagtttcg atgcttcttc tggtttcatg tatgaagcta
     7441 tcatcgcgat ggtttgtggc gattcgtcgc taataattgt aaacaaggag tcaacatcat
     7501 caatttctcg taaaatatct agcgcggttt cgccgatacg tgattctgct tctaccccgt
     7561 aaatgagttg atttagttct tccgtcgtca tgtctgggaa caagcgttgt aagtgttcgc
     7621 ggtcgagttt agcaattcct cctgaaagaa gttctaattc ccctaaaaat tctctagttg
     7681 cttcttctac tgcgccgccg tccatttctt tcattttggc catttcacgt gcaaggcgtt
     7741 gtttggatgc gtcagggagc aaatctacca cttcggtcgc gatttgttcg tcgaggctcc
     7801 aaataataag tgcggctttt tcacgtcttg aaatacctga atctgctgaa gtagttgttt
     7861 tttcttccgt ttcttctact tcgacagttt ctagttcagc atttgtttct tctaaggttt
     7921 ctttgagtgt ttctgccatt gttattcctg cctttcattg agccattttt ggatgactgc
     7981 tgcggcgcgc cctgggtctt ctttggccat ttcaccgagt ttatttttca agctttcttt
     8041 gcgggctttt aattctggtt ctgataaatc gaacgcgtct gtttggaagt tgaaatctgg
     8101 atgttcttct gggttgatga ttgcttcttc ggctggaatg tagtcttttt cttctggttc
     8161 taatgcttct tctagttgtt ctttacgttt aaggaagata atgtaggcga taattccagc
     8221 tgcaatgatg gcgaagagta aacttcctgc aagccaccaa atccaggctt tgcttgctgg
     8281 tgctgctttt tctgttgtat ctttttctgc tggcgtggcg ttgtctaaga actggatcgg
     8341 catgatggta acatcgccat tttggaaagt accttcgaat gttggtgcgg ctgctgcttc
     8401 tccgtctgcg cctgcttctt cggttgtcat attaggcgtt aatccagctg aaactccaat
     8461 tgcttttgtg aattcggcca tgtcaacacc atttttattt aaagcatttt gatcaaccca
     8521 gacaacgaca tttgtctttg ctagggctgg gtgttttttg atttcttgga tggtggagtc
     8581 tagttcataa ttcgttgttt cacttgattt ttcgcttgta taggtgttcg tatcatcacc
     8641 attttgttcc gtgtaatttg gtacgtcagc gtttgaggcg gttcctgatt ccgtcgtatt
     8701 cgcggaacct tttgatgtgt ctgttgatgt gtctttttgg ttgctacgta cttttccgtc
     8761 gtttggataa tgttccgtat tttgtttgat ttcgtcaaaa ttaaccgaga catttgtatt
     8821 cacgcggaaa ttatctaggg caaaaatgct ggaaagtgtc ccttcgatat ctgttttcac
     8881 attttttcca atcgcatttt ggatatcgac ttcattttta taagcagaac tgccttcttc
     8941 tttggatgtg tctgcttcag agataacacc atttttcgta tcgataatcg ctacgtcatc
     9001 actagcaaca tttggtacgg ctgcgctgac ggtgcgctga atgccgagaa cttgttcgct
     9061 tgttagtgtt tgattgtttt tggttttgag tgttactgcg gctgttcctt tttggcttgc
     9121 ttcttcaaaa atcgaacttg attctggtaa agttagctgc acggaggcgc tatcgatggt
     9181 tgttccatag ctttgaacga tttctttttc taaattgact ttcgtaccaa ctttttcttg
     9241 cattttttta tcttcttcac tggctccaag tgagctgttt agtagaatgt cattgccatc
     9301 ttggcctgtg tatggaatac ctaggtccgc aaatttgtca cgaacgagtg tctccacttt
     9361 ttcatcgact aaaatgttac cacttttgtc gacggtataa tcaacgccca ttttggctaa
     9421 ttgatcggtg acttgttgtt ggcttgtttc ggatagattt ttataaagag taacttctgt
     9481 tttgggcgtg ttcatgtaga gtaataacac cgtgactacg acaaaaaggc cgactaaaat
     9541 cgcgcctttg tgccaattct tcaatttcga atacattgtt tttatttttg ccatcttaaa
     9601 aacttcgctc catttttctc gtgtggacga ttgactaaaa ctcccccgac tagtctaacc
     9661 gctacacttg catatttaaa agctgtttgt agctttcgat tacattatca cgaatgaccg
     9721 cagcagtttt catttctgat tctgcttttt tcatttgaat gagtacatca ctcgcatttc
     9781 cttcgcctgt tgttaaaagg ttcgatacgg aagtttgcgc gtttgattgt gtatcactca
     9841 tactatccag catttgcgtg aaggtatttc cggcacctgt cgcattgtct gttttcgcgg
     9901 tttcaccaag cgttacttta ggtaagacac ttgctgcatt aatactttca attgccattt
     9961 cttaaaacac tcctttatac tttgccaatt tctaaatctt tttccatcat tttttcattt
    10021 gcttgtaagg cggaagtgtt tgccgcgtac attttttgcc cgaccattaa attggtcatt
    10081 tcggctgtca tatctacatt tgcgtagttg acgtaacctg cttcatttgc gttaggatga
    10141 gttggatcat agacacgttt gacgcttcct gtgtcgctcg atatttcgct tactttaaca
    10201 ccttttgttc cagttagagc tgtttcaaat ggtgtgattt cggataatac gacgcgtttt
    10261 ctaaggaaag gtgtctcgcc aggtgcggcg cttgaatcgg cgttcgcgat attattggag
    10321 cttacttcca tccattgttt cgcagcattt aacgcggagc cacttgtgtt tattccttca
    10381 aacatggttt atcaccttac tttccacggg ctgctgtgtt gatggatgaa ttatagttga
    10441 gtgcactgat agcgagcgcg tacatttggt tattttttgt taagctaatc atttcagaag
    10501 tgacgttgac attgttgccg tcttcgttga tggagccgct cttggtcgtt acttttgcat
    10561 ttgtttcgtc tatatcggtt ccagctaaat gttttgtgtt tgttttcgtt aggttgccgg
    10621 ccgactcgat gctattctga ccagatgcgc gcaaacttga gccaaatgat tcctcaaaac
    10681 tcgcttcact tgctttaaaa ttgggcgtat tggcattggc gatattattt gaaactactt
    10741 ggttggctgt ttgaagataa ttcaagtagt tgccaatatg cgtggtataa ttttccactt
    10801 gtcatttcct tctttctttt agaaaaattt cgcataattc aagttagcag cattgcgact
    10861 tttattttca gaaaaggcat tttcagtgga ttctaattgt ttttgggtga aaagaatacc
    10921 tttatttata acttcccttg tttcttttaa aatggcttct tttgtatctt ttggtaaatg
    10981 ttcggtgctt tttagtagtt catttagttt tgcttggtat tcttcgaggc taacgtttaa
    11041 ttgccccgtc gagtgaaaca gtgcttttaa ctcaaccaaa tgtgtctttg cttgattcat
    11101 gtttcatcac tccctcgtag ccttctttaa gctgcgtgat aacatgaatg atagtatcaa
    11161 tattaacggg ttgttttagt agttgcattt ggcgaatttg ttcagaaatc cattcatata
    11221 agccgaaaat gttatcgtaa agttcttgcc cggcttctgg atttaattgt aattttaatt
    11281 cttcaaagat tttttccatt ttatcaagaa taag
//
LOCUS       DABQVC010000093        11056 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.093,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000093 DABQVC010000000
VERSION     DABQVC010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11056
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.093"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            11..370
                     /locus_tag="IBJ56_001693"
     CDS             11..370
                     /locus_tag="IBJ56_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAM3417947.1"
                     /translation="MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDE
                     VKPDIVTLDITMPEMDGLEALAQIMAKDPSAKVIMCSAMGQQGMVVDAIKKGAKDFIV
                     KPFQADRVLEALEKAAK"
     gene            390..2246
                     /locus_tag="IBJ56_001694"
     CDS             390..2246
                     /locus_tag="IBJ56_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HAM3417948.1"
                     /translation="MTTNMLDLFIEEASEHLQALNDNLLQLEKDPTNGQLVSEIFRSA
                     HTFKGMSATMGFQQVADLTHAMENVLDEVRNNRLAVTEHLVDIIFTCTSHLETMVSDI
                     QHGGQGAADISKTVADLEALLHPEQETDLAVEKTYRIQIQIEEAAILKAVRAVMCLER
                     LAEMGIISETTPDREAIELEEFEQSFEVVLESAQTKEEIEAVVLDISEIEKVTVTEEV
                     EEVQVIEPIKKAAKQTTKRLENKTIRVQLEKIEKLMNVFEESVIERARIDEIAEKTNN
                     KELMEHLGRFSSISKEIQNGLLNMRMVPVDSVFNRFPKMVRTLAKELGKKIDLVIEGA
                     DTEVDKIVIDEIGDPLVHLIRNSVDHGAETVEVRRKNGKNETATINLKAFHSGNNVVI
                     EIADDGAGINKRKVLEKAIAKNVVTRAESTKMTDAEIFDLLFDSGFSTADQVSDLSGR
                     GVGLDVVRNTILKIGGKISVESSENAGSTFRIEIPLTLSIIQSMLVATSERRYAVPLA
                     NVAEAITINPADIQHVHGKDLINYRETIIEVLDLGECFHETPLNDTDELLLLVVKNAK
                     RTFGLIIKDIIGQREIVLKTLGGFFSESQIAFSGATILGDGRVVLILNLETF"
     gene            2259..2558
                     /locus_tag="IBJ56_001695"
     CDS             2259..2558
                     /locus_tag="IBJ56_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HAM3417949.1"
                     /translation="MEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKK
                     EMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEID"
     gene            2577..2987
                     /locus_tag="IBJ56_001696"
     CDS             2577..2987
                     /locus_tag="IBJ56_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417950.1"
                     /translation="MKQEAYNAVKMKVDQEKTAILKELQLLLSKREKVVEKLAHEKEV
                     YYSRTKKERLQVAVLAGSMQLDAFSPSRIQQMEREIHQISQYIKSNEQILEQLEEKGK
                     QAKKMYDDTRKKWQQLENKREEQTLRDLKMVLLK"
     gene            3003..4049
                     /locus_tag="IBJ56_001697"
     CDS             3003..4049
                     /locus_tag="IBJ56_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HAM3417951.1"
                     /translation="MLIPDNLLQPLVGKKQVEPKESLAEELVELPFISLLMENSPAPL
                     LKGEADNGEQATLPLKEIAQPLVSAKLLDDAPETKLQVAPLELKEVKETLAAIAKQAI
                     DQPKIENAPQAVETPVTNTPKEPTKNASREQQPPPELIIPTKESPKLAENVAKNQPVL
                     AKLPQEKEVVQLFKASIKEPVTAKEEVAVKKPAESSNIWHDTAKQLTPAAKPEVPVTL
                     KQLDKTITDQIEQLQKFQVKQNKAFFAIQPESLGKVEVLLKKMPDKIFVHIEYQEQTA
                     KQKLEQMAQDLHNRFRDRGVEVAVTMTEKQAPKENNQGSDGRHQGESKKEKERENPHQ
                     ERAKQEAFDLEEET"
     gene            4051..4473
                     /gene="flgD"
                     /locus_tag="IBJ56_001698"
     CDS             4051..4473
                     /gene="flgD"
                     /locus_tag="IBJ56_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464223.1"
                     /note="acts as a scaffold for the assembly of hook
                     proteins onto the flagellar basal body rod; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HAM3417952.1"
                     /translation="MDGISSLSGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDP
                     SSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLN
                     GEVISGKVESVQQTTNGVMLKLKDNDSLVPMTYVTEIN"
     gene            4493..5728
                     /gene="flgE"
                     /locus_tag="IBJ56_001699"
     CDS             4493..5728
                     /gene="flgE"
                     /locus_tag="IBJ56_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HAM3417953.1"
                     /translation="MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDL
                     LYQNTMGSVAGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFI
                     AGDNAGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNS
                     AIPGEATKNGSLSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDASGNVS
                     YEYEIQMDGKALTPPVTGTLNYNAQGELTNPDALKNIQINSTVNGKQVNMGLNLSGLT
                     NYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLV
                     KMGNGEYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGN
                     TKVIRVADDVMKQIVNLIQ"
     gene            5742..5978
                     /locus_tag="IBJ56_001700"
     CDS             5742..5978
                     /locus_tag="IBJ56_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HAM3417954.1"
                     /translation="MKINHTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVV
                     KITISGKCIGYGEILTKDGKMFVKITKLGEGSSS"
     gene            5999..6991
                     /gene="fliM"
                     /locus_tag="IBJ56_001701"
     CDS             5999..6991
                     /gene="fliM"
                     /locus_tag="IBJ56_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HAM3417955.1"
                     /translation="MSDKLSQEQIDALLSQISEGKVVDESTEIGDFGRFHPYDFHKPE
                     KFGAEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSY
                     IFCIIDLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKLSERRLLSVFEELTLKSIL
                     EKFCEALKDSFKSVHPISPEIVNIETNPALLRVTSPNDMMALVSVDIKSEFWISTMRI
                     GVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELN
                     KLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVKFMRHTGRTEQER"
     gene            6994..8541
                     /locus_tag="IBJ56_001702"
     CDS             6994..8541
                     /locus_tag="IBJ56_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein"
                     /protein_id="HAM3417956.1"
                     /translation="MEQLLEKNITQMELDVIGEIANISFGSASTVLSDLLHQQVTIST
                     PKVEIVDLYNTKDIDIPHVVLEVNFHKGIEMRNLFVLQSEVAAAIADLMMMGDGNIDP
                     NEELSELHLSAVQEAMNQMMGHSATAMSNMFGEMIDITTPDIKVIALKEQLEDTNDQT
                     MIKVGFDLIIGDLITSNLMQLIPIDKGHELAKRLLGDAVPEPEPVKEEISLTAEELDV
                     FLEVCNIGIGSASTVLSKLLNRKVSLQIPTARVIDSKEFEFNERPCLVTSVEFVEGLR
                     SSNTFIISKNAALIMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEM
                     LGTKIDISPPTMEFCNFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAK
                     EMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEDIPV
                     TLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGI
                     QMTELVR"
     gene            8547..9950
                     /locus_tag="IBJ56_001703"
     CDS             8547..9950
                     /locus_tag="IBJ56_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417957.1"
                     /translation="MRKLGLMTILFWLCFSVQAFAADPEPPIISLEGEQHVFTSGEVI
                     SFHIENAADLKIILVNEHGQRKLLDEETYTVTDWDLDGSYQAEFYQADVPKPFVTVED
                     LFEVKQLEDVAKDETAPSLKTIEITHDEDVLLTSVLRVSADLDDAESGVKQATLVVHS
                     ESNESEIELIRNNYTGKFAAEIPLEKFQLGEKITFQLQLVDFAENEITVDLENTVQLY
                     QPKAPLLSYDGNDITNVQKKIGQVGKQIELTLDKYTTEFPELETETGKIIPLKWQKTA
                     TEWKGSLTLPSELSGEIIHIQGMDQHLLVRATSEPFGEVQLVNNAILTGTILSDFTLI
                     SNLYIEVNGQKFSVERAGNRFTSAEITTTGKIVLHWTDWDGQIYSKQMNQEIKPVIAM
                     PGKEIIAPPPVIPNEKTQILTSPAPKPSVEAHENTPKKQVKKETSTKDNSSSIPFWIP
                     ALMIIGVIIFSGNRAMK"
     gene            9973..>11056
                     /locus_tag="IBJ56_001704"
     CDS             9973..>11056
                     /locus_tag="IBJ56_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417958.1"
                     /translation="MKIDGIQESAENRNQLERELIKQNPVVKEGTIKAQMNTEVAVPK
                     TPPVSFSFKELSSLQLNGTSAASLELYMKLMMNNAKKANDLIFYVMRAGIKNPTDSTK
                     WQTVRSEISSQLSTILMKQHNFEAYFSENPANQKLFLANQKIMNEISFLLKMLPTLTF
                     ETTGKYDFLRMMQIASGNMETGIQMMREFQGHIEHATRLDPIVDARQETNWMIKVLRE
                     FGNMFQSRHLLPYELQAENINIWKLGSEYLKLMNQLLPQIGAFPNGNIKIFHQQATKP
                     LTELFQELQRLADGQMTQGGIAVILDRMQGQLTRLAQLFQKMEIEAGFTDTERILGSV
                     DAEFASDMTKMMLLAQQEMSFFDLLVK"
BASE COUNT         3927 a         2106 c         2411 g         2612 t
ORIGIN      
        1 gttgtatttt atgttgaagt tgttgattgt cgacgatgca atgttcatgc gtacgatgat
       61 taagaatatc gtgaaagata gcgattttga agtagttgca gaagcagaaa atggactgga
      121 agcagtgaaa aagtatgatg aagtaaaacc ggatatcgtg acactggata ttacgatgcc
      181 agaaatggat ggcttagaag cacttgcgca aattatggcc aaagatccat cggcgaaagt
      241 aattatgtgc tcggcgatgg gccaacaagg tatggttgta gacgccatta aaaaaggtgc
      301 caaagacttt atcgtaaaac ctttccaagc ggaccgggtt ttagaggcgt tagaaaaagc
      361 agctaagtag agaaatggag gtggatagca tgactacaaa tatgttagac ctgtttatag
      421 aagaagcttc agaacattta caggcgctaa atgataatct gttacagctt gagaaagacc
      481 cgacgaacgg tcagttagta agtgaaattt tccgttcagc acatacattt aaagggatgt
      541 ccgcaacgat gggcttccaa caggtggctg atttaacgca tgcaatggaa aatgtactag
      601 atgaggtacg caataatcga ttggctgtaa cagaacattt ggtagacatt atttttacat
      661 gtacatctca tttggaaaca atggtttcgg atatccagca cggcggacaa ggcgcggcgg
      721 atatttcgaa aaccgtagct gacttagagg cgcttttaca tccagaacaa gaaacagatt
      781 tagcggtaga aaaaacgtat cgcattcaga ttcaaattga agaagcagct attttgaaag
      841 cagtacgggc ggtaatgtgt ttagagcgac ttgcagaaat ggggattatt tcagaaacaa
      901 cgccagacag agaagcgatt gagctagaag agtttgagca gtcattcgaa gtagtcctag
      961 agtcggcgca aacaaaagaa gaaatcgaag cggttgttct agatatttct gaaatcgaaa
     1021 aagtgactgt gacagaagaa gtggaagaag ttcaggttat tgaaccaatc aaaaaagccg
     1081 caaaacaaac aaccaaacga ttagaaaata aaaccattcg tgtacaactt gaaaaaatcg
     1141 aaaagctaat gaacgttttt gaagaaagcg tcattgaacg ggcgagaatt gatgaaatcg
     1201 cagaaaaaac gaataacaaa gaattgatgg aacacttagg acgattcagt tccatctcca
     1261 aagaaattca aaacggctta ctaaatatgc gtatggtgcc agtggatagt gtgttcaatc
     1321 gctttccaaa aatggtgcgc acactagcca aagaattagg taagaaaatc gacttagtga
     1381 ttgaaggcgc ggatacggaa gtcgacaaaa tcgtcattga tgaaattggc gacccacttg
     1441 ttcacttaat ccgtaattca gtagaccacg gtgcggaaac agtcgaagta agacgtaaaa
     1501 atgggaaaaa tgaaaccgcc acaattaatc taaaagcttt ccatagtggg aacaatgtcg
     1561 tgattgaaat tgcggatgac ggtgcgggaa tcaataaacg caaagtgtta gaaaaagcga
     1621 ttgcgaaaaa tgtcgttaca agagcagaat caaccaaaat gacggacgcg gaaatttttg
     1681 atttattatt tgattccggt ttcagtaccg cggatcaagt atccgatctt tctggccgag
     1741 gcgtgggact agatgttgtc cgtaatacga ttctcaaaat cggcggaaaa atcagcgtag
     1801 aatcaagtga aaacgctggt tcgacgttcc gaattgagat tccgctgaca ttatcgatca
     1861 tccaatcgat gctcgttgca acatcagaac gtcgctatgc tgtaccgctg gcaaacgtgg
     1921 ccgaagccat cacaattaat cctgcagaca ttcaacacgt tcacggcaaa gacttaatca
     1981 actaccgtga aaccattatc gaagtactcg atttaggcga atgcttccat gaaacacctt
     2041 tgaatgacac ggatgaatta ctattactcg tcgtgaaaaa tgccaagcga acttttggac
     2101 ttattattaa agatattatc ggtcaacggg aaatcgtttt aaaaacactt ggtggctttt
     2161 tcagcgaaag tcagattgcc ttttctggag caacgatttt aggcgatggt cgtgtcgtat
     2221 taattttaaa tttagaaaca ttttaaggag gaaccatgat ggaacaagta tttcaagtag
     2281 aacttcctga atgggaaccg aaagaaccga gccaagaagg acgcgaaaaa ggctctatcc
     2341 gccaagtaga caatattggc gttaacttaa tcgtccgcct tggaaaaaaa gaaatgccag
     2401 taggggatat cgccgagcta agcattggcg atgtcctcga agtggaaaag aaacctggcc
     2461 acaaagtcga aattttcctc gatgaaaaga aagtcggcat cggtgaagct attttgatgg
     2521 acgagaactt cggaatcgtt atttcagaaa tcgactaaag aaagagggca agtgatttga
     2581 agcaagaggc ttacaacgca gtgaagatga aagtggacca agagaaaacg gccattttaa
     2641 aggaattgca attattacta tccaaacggg aaaaagtcgt agaaaaatta gcgcacgaaa
     2701 aagaagtcta ttactcgaga acgaaaaaag aaagactcca agtggcggta ttagccggaa
     2761 gcatgcaact agatgccttc tcgccgagcc gcattcaaca aatggagcga gaaattcacc
     2821 aaattagcca gtacattaaa agcaatgaac aaatcttaga gcaactagaa gaaaaaggaa
     2881 aacaggccaa aaaaatgtac gatgacacac gaaaaaaatg gcaacagctt gaaaataaaa
     2941 gagaagaaca aacattacgc gatttaaaaa tggtgctatt aaagtaaaag ggaggaaaac
     3001 gcatgctaat cccagataat ttgctacaac cactcgtcgg aaaaaaacag gtcgaaccaa
     3061 aagaatcgtt agcagaagaa ttagtagaac taccttttat ttcactttta atggaaaata
     3121 gccctgcgcc gctcttaaag ggagaagcgg ataacggaga acaagctacg ctaccactaa
     3181 aagaaatcgc ccaaccactc gtttcagcca agctactcga cgatgcacca gaaacgaaac
     3241 tgcaagtagc accactcgaa ctcaaagaag tgaaagaaac acttgcggca atcgccaaac
     3301 aagcaattga tcaacccaaa atagaaaacg ccccgcaagc tgtagaaact ccagtaacaa
     3361 atacaccgaa agaacccaca aaaaatgcca gtagggagca acaaccgcca ccagaactta
     3421 tcatacctac aaaagaatca cctaaactag cagaaaacgt ggccaaaaac caaccagtcc
     3481 tagccaaatt acctcaagaa aaagaagtcg tgcaactttt caaagcgagc attaaagagc
     3541 cagtaactgc caaggaagaa gttgccgtca aaaagcccgc agaatccagc aatatttggc
     3601 atgatacggc gaaacaactc acgccagctg ccaaacctga agtcccagtg acgttaaaac
     3661 aacttgataa aaccatcacc gaccaaatcg aacagctaca aaaattccaa gtgaaacaaa
     3721 ataaagcctt tttcgccatc cagccggagt cactcggaaa agtcgaagtt ttacttaaaa
     3781 aaatgcccga taaaatattt gtacatatcg aatatcagga acaaacggcg aaacaaaaac
     3841 tcgaacagat ggcgcaagat ttgcataatc gtttccgaga tcgcggcgta gaagttgccg
     3901 tgacaatgac agaaaaacaa gcaccgaaag agaataacca aggctcggat ggtcgacacc
     3961 aaggtgaatc caaaaaagaa aaagaacgcg aaaatccaca tcaggaaaga gctaaacaag
     4021 aagcatttga tttagaggag gagacgtaat ttggacggaa ttagtagttt atcaggagcc
     4081 ggtcaggata caaataatgt agtaacatcc agcgtatcca aaacccttgg caaagatgac
     4141 ttcatgaaac tatttttaac aagtttgcaa taccaagacc catcgagccc gcttgatacg
     4201 aatgaaatga tgtcgcaaat ggcgcaactt tccttaatgg aacaagttgc caatatgacc
     4261 actgccgtag ataagctttc tgaacaagcg caaaactccg ccttgcaatc cgcggttaat
     4321 ttcatcggta aagatataaa aggtgtttcg ctgaacggcg aagtaattag tggaaaagtc
     4381 gaaagcgttc aacaaacgac aaacggcgtc atgctgaaat taaaagataa cgatagcctc
     4441 gtgccaatga catatgtaac agaaattaat taaaaatttg ggagtgtgaa ttatgaatca
     4501 aactatgtat acagctattt ctgggatgaa tgcgttccaa caagcattat cggtaacatc
     4561 aaataatatt gccaatgcca acacgacagg atacaaaaaa caaagcgtcg ttttcaatga
     4621 tttactttac caaaacacaa tgggatctgt tgcaggcgga ctttatgctg gaacaaaccc
     4681 aatgagtttc ggttccggtt caaaaattgg agcgatttta accgattata cagcgggttc
     4741 cccaacagca acgggcagaa ataaagatgc agcactacaa ggtcgcggct ttttcatcgc
     4801 gggcgataat gcagggggca atatcgttta cacgcgtgac gggagcttcg ccgtttccga
     4861 caacaattat ttaactaccc aacaagggaa atacgtaatg ggttacgcaa cagacaaaaa
     4921 tggcaacgtt ttaaacggta atttgcaacc aattcaaatc ccgctaaata gcgcaattcc
     4981 aggagaagca acaaaaaacg gtagcttaag cggtaacatt ccactagact ggggcgaaaa
     5041 agatacgatt tcttccgagc tttctgtata tgataatgct ggcggaaaac ataaacttca
     5101 agtgaatatg aaagctgcta caccagatgc gagcggtaat gtttcctacg aatatgaaat
     5161 tcaaatggac ggaaaagcat taactcctcc agtaacagga acacttaatt acaatgcgca
     5221 gggcgaatta acaaacccag acgcacttaa aaatatccaa atcaattcca cagtaaacgg
     5281 caaacaagtc aatatgggct taaacctaag tggcttaacc aactacggaa caaaccaagt
     5341 attctcacca acttctgacg gtaaaggcgc tgcgactgta aaagattatg cagttaccga
     5401 ttctggctat attgcagtga gttactcaga tggtacagtt atcccagttg cccaacttgc
     5461 ggtggctact ttctccaatg aagacggctt agtcaaaatg gggaacggcg aatatgttcc
     5521 aggattatct tctggcgatg cagtatacgg cgttgctggc caaaatggcg ctggcggaat
     5581 tagcggttct tctctagaag gttcaaacgt agacttgtcc cgcgaattcg ttaacttaat
     5641 gacataccaa agtggtttcc aagggaatac aaaagttatt cgtgtggcgg atgacgtgat
     5701 gaaacaaatt gtgaacttga ttcagtaggg agtttagcta aatgaaaatt aatcatacta
     5761 ttccactcag aatcgacttc gaattaggac gtacgaaaca gccagtcggt agtttgctag
     5821 atgtaaaaaa agggaccgtt tttcggttag aagattccac agctaatgtg gttaaaatta
     5881 cgatttcagg caaatgcatc ggttacggtg agattttgac aaaagacggc aagatgtttg
     5941 tcaaaataac gaaattagga gagggaagtt cttcatgaga gctagggagt gacaaaaaat
     6001 gagcgataaa ttaagtcaag aacaaattga cgccctgctt tcccaaataa gtgaaggtaa
     6061 ggtagttgat gaaagtacgg aaattggcga ctttgggcgc tttcatccct atgactttca
     6121 taaaccagag aaatttggcg cagaacacct cgaaagctta aagacgattg catccgcttt
     6181 tacgaaaaaa agcatggagt ttgtttccca gcgtatccgg attccaattc ataccgaagc
     6241 aacccttgca gatcaagttt cctttgcgag tggttatatc gaaacaatgc cgaacgatag
     6301 ctacattttc tgcattatcg acctgggtaa tccggagctc ggtcaaatta ttatcgaact
     6361 cgatttagcc tatatcattt atattcatga atgcttatct ggcgggaatc caaaacgaaa
     6421 attgagcgag cgcagacttt tatctgtttt tgaagagctg acgttgaaat ctattttaga
     6481 aaaattctgc gaagcactca aagacagttt taaatcagtg catccaatct caccagaaat
     6541 cgttaatatc gaaactaacc cagcacttct acgtgtcaca tcaccgaacg acatgatggc
     6601 gcttgtcagt gttgatatta aatcagagtt ttggattagt acaatgcgca ttggcgtgcc
     6661 gtttttctcg gtggaagaga ttatgaataa gctggaaaac gttgtggaat atacgtttga
     6721 taaacggcgg aactttgatg cggaagtcga gcaagaattg catcaagttg agaaagaagc
     6781 gcgcatacgt gtaggtgaaa ttaaaacaac gtggaaagaa ctgaataagc ttgaagtagg
     6841 cgacgtgctt ctgacagaaa ctcatatacg tgacacactc aaaggctacg tcactgaaaa
     6901 atggaaattt gaatgttata tgggaaaaag tggtaaccaa aaagccgtta aatttatgcg
     6961 tcatacaggg cggacagagc aggagaggta gaagtggagc aattactaga gaaaaatatc
     7021 acgcaaatgg aactagatgt gataggagaa atcgccaata tttcgtttgg ctcagcttct
     7081 acggtcttat ctgatttact acaccaacaa gtcaccattt cgacgccaaa agttgagatt
     7141 gttgatttat ataatacgaa agacattgat attccacatg tcgtgttaga agtgaatttt
     7201 cacaaaggaa tcgaaatgcg gaatttattt gttctgcaat cagaagtggc tgcggctatc
     7261 gcggacttaa tgatgatggg tgatggaaac attgatccga atgaagaact ttcagaactt
     7321 catctaagcg ccgtacaaga agcgatgaac caaatgatgg gacattccgc cactgcgatg
     7381 agcaatatgt ttggcgaaat gattgatatt acgacaccag acattaaagt aatcgcgcta
     7441 aaagaacaat tagaagatac gaacgaccaa acaatgataa aagtcggctt tgacttaatt
     7501 atcggcgact tgatcacatc gaatttaatg caactcatcc ctattgataa agggcatgaa
     7561 cttgcaaaaa gattacttgg cgacgcagtt ccagagccag aaccagtaaa agaagaaatc
     7621 agcttaacgg ccgaagagtt agatgtcttt ttagaagtat gtaatatcgg catcggttca
     7681 gcttcaaccg ttctatccaa attgcttaac cgtaaagttt ccttacaaat cccaactgca
     7741 cgcgtaattg atagcaaaga gttcgagttt aatgaacgcc cttgcttagt gacgagtgtg
     7801 gaatttgtcg aagggctgcg ctcaagcaac acatttatca ttagcaaaaa tgccgcgcta
     7861 attatggcag atttaatgat gatgggagac ggtttggttc aagaagatgc agaactgacg
     7921 gaacttgaag tcagcgcagt gcaagaatta atgaaccaga tgatgggctt ctcagcgaca
     7981 gcaatgtcag aaatgctcgg aacaaaaatc gatattagcc cgcctacaat ggaattttgt
     8041 aatttcggcg atacgatgat tcaaaaaaac attgaagaag gaaaaactgt cgaagtcatc
     8101 ttcccgctag aagtagaagg actattaaaa acgccaatgt accaaatttt taatccagca
     8161 gcagcaaaag aaatggcgca attgatgctt gggattcagg cgaaagaagt cgcagagaaa
     8221 gaagcgacga ctccagcaga aataatcgaa ccagaaaaac cagctgaacc agtgcaccaa
     8281 gcagttatcg aagaaaaaga aacactttcc gaaatggaac aaattttgga agatattccc
     8341 gtaacgcttg aagtggtatt cggaacagca aaagtaaaac tcgaaaaatt tatctcttgg
     8401 tgtgaaaaag atgtgattat cctaaaagag agtatgaacg aaccacttgt cttagcgcta
     8461 aatggcgtga cgattggtaa aggaatttta gttcgcgtgg atgatcattt tggtatacaa
     8521 atgacggagt tagtaaggtg aaaaatgtgc ggaaacttgg actgatgaca attttatttt
     8581 ggctgtgttt ttcggttcaa gcatttgcag cagatcctga acccccgata atatcgcttg
     8641 aaggcgaaca gcatgttttt acatctggtg aagtgatttc gtttcatatt gaaaatgcgg
     8701 ctgacttgaa aattattctg gtgaatgaac atgggcagag aaagcttcta gacgaggaaa
     8761 cgtatacggt gacggattgg gatttggatg ggagttacca agctgaattt tatcaagcag
     8821 atgtgccgaa accatttgtt actgtggaag atttatttga agtgaaacag cttgaggacg
     8881 ttgcgaaaga tgagacggcg ccgagtttga aaacgataga aattacgcac gatgaagatg
     8941 tcttgttaac gagcgtgcta cgtgtatcag ctgatttaga tgacgcggaa tctggcgtga
     9001 aacaagcgac tttagttgtt catagcgaat cgaatgaatc agaaatcgaa ctcattcgca
     9061 acaactatac agggaagttt gctgcagaaa tacctttaga aaaattccaa ctgggtgaaa
     9121 aaatcacttt tcaactgcaa ctagttgatt ttgccgagaa tgaaatcaca gtagacttag
     9181 aaaacactgt ccaactatat caaccaaaag cacccctttt aagttacgac ggtaatgaca
     9241 tcacgaacgt gcagaaaaaa atcggccaag tcggcaagca aatcgagcta actctcgaca
     9301 aatatacaac tgaatttcca gaactagaaa cagagaccgg caaaataatc ccactaaaat
     9361 ggcaaaaaac ggcaactgaa tggaagggaa gtctaacttt accgagcgaa ttatccggtg
     9421 aaatcattca tattcaagga atggatcaac acctgctcgt tcgcgccact agtgaacctt
     9481 ttggcgaggt tcagttagtc aacaatgcca ttttaacagg aaccattctt tcggatttca
     9541 cacttatttc aaatctttat attgaagtaa acggtcaaaa attttccgtc gaacgagcgg
     9601 gcaaccgttt cacaagtgca gaaataacca ccacaggcaa aatagtgctc cactggacag
     9661 actgggacgg tcaaatttat tccaagcaaa tgaatcaaga aatcaagcct gtaatcgcaa
     9721 tgccaggtaa agaaataatc gcaccaccac cagtaatacc gaacgaaaaa acgcagatac
     9781 taacatcacc agctcctaag ccatctgttg aggcacatga aaataccccc aaaaagcagg
     9841 tgaaaaagga aacctcaact aaagacaact caagcagtat cccgttttgg attccggcgc
     9901 tcatgattat tggcgttatt attttttcgg gtaatagagc aatgaaataa aagcagaagt
     9961 gaggtggacg gaatgaaaat agatggcatt caagaatctg cagaaaatcg taatcaacta
    10021 gaacgggaac tcattaaaca aaatccagtt gtaaaagaag gtacgataaa agcacaaatg
    10081 aatacagaag tagccgtacc gaaaacaccg ccagtatcat tctcttttaa agaattaagc
    10141 agcttacaac taaacggaac aagcgcagca agtttagaat tatatatgaa attaatgatg
    10201 aacaatgcta aaaaagcgaa tgatttaatc ttttacgtga tgcgggcggg aatcaaaaat
    10261 ccaactgatt ctactaaatg gcaaacagtc agaagcgaga ttagtagcca attaagtaca
    10321 attctaatga aacaacataa ttttgaagcg tacttttctg aaaatcccgc gaatcaaaaa
    10381 ttatttttag ccaatcaaaa aattatgaac gaaatatcct ttttgctaaa aatgttgcca
    10441 accttaactt ttgaaacaac aggaaaatac gacttcttgc gcatgatgca aatagcttct
    10501 ggcaatatgg agactggaat ccaaatgatg cgcgaattcc aggggcatat cgaacatgcg
    10561 acaagactag acccgattgt tgacgccaga caagaaacga actggatgat taaagtgtta
    10621 cgcgaatttg gcaatatgtt ccaatcgcgc cacttattac catatgaatt acaggcagaa
    10681 aacatcaata tttggaagtt gggtagcgaa tacttaaaac taatgaacca acttttaccg
    10741 caaattggcg catttccaaa tgggaatatc aaaatttttc accaacaagc gaccaagcca
    10801 ttaacggaac ttttccaaga actgcaacgc ttggcagacg gacaaatgac gcaaggtggg
    10861 atcgccgtta ttttagaccg gatgcaaggc caacttacac gacttgcaca actgtttcaa
    10921 aaaatggaaa tcgaagcagg tttcaccgat acagaacgaa ttttaggtag tgtggacgcc
    10981 gaattcgcga gtgatatgac aaaaatgatg ctactcgcac aacaagaaat gtcatttttt
    11041 gatttattag taaaag
//
LOCUS       DABQVC010000094        10977 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.094,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000094 DABQVC010000000
VERSION     DABQVC010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10977
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.094"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            24..899
                     /locus_tag="IBJ56_001705"
     CDS             24..899
                     /locus_tag="IBJ56_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3417959.1"
                     /translation="MELRVLNYFLTVAREKTISQAAEVLHLSQPTLSKQLKELEEELG
                     VTLFIRGNRSITLTEDGLYLANRGKEILSLVELTTSNLLQNETISGKIMIGAAETRGF
                     EFIGSMLHELREKHSDITFQLHSGNADDVLEKIEHGLLDFGLVINPVEKLQYEYLPLN
                     IEDTWGILVNTKHSLAKKAVVTPSDIEANPIVVSNQSFIDNQLASWLGEHFEQLNVIG
                     RYNLLYNASLLAKENIASILCIDGIINTKNTNLKFIPFSPPLTAGISIVWKKNQTFSS
                     ASKEFLRLIKKTCSK"
     gene            complement(922..3504)
                     /locus_tag="IBJ56_001706"
     CDS             complement(922..3504)
                     /locus_tag="IBJ56_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAM3417960.1"
                     /translation="MVKAHIVNHTHWDREWYFTSADALVLSEQLFTEVIDELKKHPEA
                     NFVLDGQLSILDDYVALYPEKLADIKQLIADKQLFIGPWFTQTDAFFAHGESILRNAM
                     IGIFDSKKYGDYMEIGYLPDTFGFNAQMPTLLEHAGFDNVIFWRGIHLGEHVASPYFK
                     WQGLGEEASIYAINMPQGYGTGMLLEPTSAYVDGRLDPAIDFIEKYSKTTEVLIPSGN
                     DQLNIISNFAEKLVEINKMGRHDYQLSTYQDFIQYVRELPDLEEYRGEFRSPVLARVH
                     KTIGSSRMNIKLKSASLEQKLLTRIEPLLVIAKASGISISERLLMHTWKKLLEGQAHD
                     SLAGCVSDPVAEDILHRMKEADELCDSIENTIVKKIADDLSLAANEIIVFNTDLHDFD
                     GYKEIQVVTEHKNIHFPAFPDATIVQEEFIPSRENVLEETPAGNRFIEELGYYVLQVR
                     VKVELPGLGYRVIAFEENDRELDSMIASNDVAITNNFYKITFENGEIALEKPNGERIT
                     SFITLEDDVNAGDTYDYSPLAGDIAELFTFSEVKTEKSSEVERLILTGKSDFPLDRLT
                     KEGHGDLQIKLILEVKKGSELLDVKVEVDNQIKNHRLRLKVNTGVKTDYNIASLPFGY
                     IKRKPVVPANWRETYSEMPIDIEPLEQSVTLTNEAESCTIFTQGIKEYQQLDQYLALT
                     LLATTGQLGKPDLAYRPGRASGDTTKKGHVLIETEGAQLLGKHEFSLAIYLGDQAFDE
                     HKTAERTKAFNQANVSYQRQPFNHFLHRLDNKIQKTERKLGAKQTLGMLNLPKEYLVS
                     ACHPSYYSADKYIIRLENPTNTPQKLALSDMSFEYVNAIEEVVANDNNTIPAYGAVTL
                     RLEI"
     gene            complement(3520..4626)
                     /locus_tag="IBJ56_001707"
     CDS             complement(3520..4626)
                     /locus_tag="IBJ56_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HAM3417961.1"
                     /translation="MFRKIGSELKKHVLTGISYMIPLVIAGAVIMAIARVGGSFFGIT
                     DIWDAKYADSANSLISLLHSLDGFGGLALGMMFPVIAAFIGYSIADKLALAPGLVGGL
                     LARDIGAGFLGALAAGLIAGYTCLLIKKYVKLPKAAASIVPVFLVPVFGTLITVLIIN
                     YVVGIPFADLNTALENWLNGMSGSNQILMAAIIGAMVGFDLGGPVNKAAVTTAMALLT
                     SGIYAPNTAAQVAIIIPPLGLGLATLIAKRKYNTEMREAGKSSLIMGLVGISEGAIPF
                     AVESPLKVIPATVLGSAVGGALAVGLGAINQAPISGFYGWFTVENWPVYILAIAVGTL
                     IVAGMSVALRKASAGEEMAGSSYDDEIDEAEWEA"
     gene            complement(4639..4959)
                     /locus_tag="IBJ56_001708"
     CDS             complement(4639..4959)
                     /locus_tag="IBJ56_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HAM3417962.1"
                     /translation="MKRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGAT
                     GIENELTEKDVNIGEVVIFAVDTKVRNKERFDGKVVLEVPVSAPIKDAEKVINAALAL
                     IDEK"
     gene            complement(4956..5420)
                     /locus_tag="IBJ56_001709"
     CDS             complement(4956..5420)
                     /locus_tag="IBJ56_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3417963.1"
                     /translation="MEVKDILTKELVVFDLEATTKEAAIEEMAEMLDEHGILADKATY
                     VRAVLDREAHSTTGIGNNIAIPHGKSESVTKSAIVFARTKEMIEWESLDDEPVNMIFL
                     LAITDSDKTDGHLKILAEIATKLMDDDIVENLKNTRDEEEVIRILNGGVVEI"
     gene            complement(5420..7381)
                     /locus_tag="IBJ56_001710"
     CDS             complement(5420..7381)
                     /locus_tag="IBJ56_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3417964.1"
                     /translation="MKAVTKMIANREKNIIQFLMKTGQTRVGTIANHLGLSEKTVSNS
                     LKEIDVFLKDFDMTVVRKPKIGVYIEGDNKAFAEVSRFLDNQVSPIPSTKEERVIYIF
                     SKLLKADDYITIHQLADELYISRSTIEKNMVEVTKMLEKEGITLYKKPSKGMKLLISE
                     REKRALTSKFINNFWGNNWYLKQEGEKVLQAFDTIKADVTGIFPEEGLKEIIAIVQAF
                     SERHDFAFTDYAFQSIVIHLAIAVERIRAGEYIENVESDPMKDVFDSQRNNTEILVSM
                     LEDRLDIKIPAFEVGYIQLHLTAAYNQQHDELLVSVRPKEDDVAEFVSTCLAEGNYDK
                     SLLDDLTTHMKSAINRLKLGMHFKNPYLSKIKQNFPQAFEEALYFKAKFEQKYDVQVN
                     EDETAYIALHFEAYKERSRSFPDQIRVVLVCSTGLGSSRLLAARIKKYFPMITIEKIL
                     SVQALMETEVDVDLVISTIYLELEDIPSIVVSPMMSKADLQQVESQIERTRRKKKKRS
                     QPFVDLIEPKTIFAKLDVATMEDAITQIGNKLVNLGIAKSGIVESALKREALSFTSFE
                     EMATPHADPALINESHIAIATLKNPVKWGLVEVDKIFFIALTEQNGINLDAMYEQFYK
                     YIDNKKWLEKLTQLKSAAEIYEHLLKDGM"
     gene            7544..8401
                     /locus_tag="IBJ56_001711"
     CDS             7544..8401
                     /locus_tag="IBJ56_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar uptake protein"
                     /protein_id="HAM3417965.1"
                     /translation="MSIYLIALLPVLGWGFMPIIANLRKSTPEEQLLGTSISALLFAF
                     ILFWILSPEITVLSFIVSFVSGIFWSFGQLLQFKGIAASSVAKAMPISNGTQLVGATL
                     FAVLVFREWQTVTAVIIGVVAVILILIGVVMTGFQKRGNHITESVSFHVYGIVILSSF
                     FLTLYVVTNQLFDVTGFSIILPQAIGMLTCAIGINLAKKTAISRKNVTFNLMTGLSWS
                     IANLGMFLATAVLGVATSFSISQACVIVATIGGILIFKQKKSPLEWTFILSGILLIMV
                     GVVFLSLLK"
     gene            complement(8420..9232)
                     /locus_tag="IBJ56_001712"
     CDS             complement(8420..9232)
                     /locus_tag="IBJ56_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HAM3417966.1"
                     /translation="MIRAISVDMDGTFLDGNGEYDRARFEKIYVELMKRGIKFIVASG
                     NQYYQLKSFFPGKDEELFYVAENGAVIFHQGELRSVNRFEERLVQKILRTLIQEYQDL
                     QVILCGVKSAYLLKAADPDFKAFAKKYYFELQELDSFDVLPDDTFIKFALDVEVAKTG
                     QIVEDLNQMFAGEIRAVSSGHGSIDIIIPGVTKGSAIQQLLNEWQVAPDDLLAFGDAN
                     NDIEMLQLTSHSYAMQESSPEVLAAAKHVAASNKEAGVLQVIEEYMKKSQRP"
     gene            9379..9933
                     /locus_tag="IBJ56_001713"
     CDS             9379..9933
                     /locus_tag="IBJ56_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1211 domain-containing protein"
                     /protein_id="HAM3417967.1"
                     /translation="MSKGRLEAFSDGVFAIIITIIVLGMTLPDVFTAASTQAFLWEIF
                     IFIEGGLIIGQFWYSHSRLFDQVTFISTSAVLFNILFLLVLSLIPLFTRAIMQHPDMT
                     APIIGFVITILITSVLFQLLHHAVNGKDSGIDNWKFRISSFIFVIMLGIISFFAPQIS
                     TILFIIFPIAGWIIQLTNRRQPPK"
     gene            10014..10313
                     /locus_tag="IBJ56_001714"
     CDS             10014..10313
                     /locus_tag="IBJ56_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein"
                     /protein_id="HAM3417968.1"
                     /translation="MRSLDAVEILRRGETIERYKEGGNSMLPLIKSMQPVRLEPIGMR
                     ELKVNDIVFCKVRGSFFTHKISKIRGKQYQISNNHKHVNGWITRNSIYGIVTKIW"
     gene            complement(10366..10776)
                     /locus_tag="IBJ56_001715"
     CDS             complement(10366..10776)
                     /locus_tag="IBJ56_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-O-methyl transferase"
                     /protein_id="HAM3417969.1"
                     /translation="MKRYIINRGIMVAVVIIYMYPLLGIIKGEKIFGDIGTPIVMIIA
                     ALIGTLSSVFLSEEKTKREYEKEKLEKDERYINNRKTFSHYLLIVLALTIPIVLIVLN
                     LNGIEQISISSLTIIFLIFCFAYMIVLEIIRKKV"
     gene            complement(10778..10954)
                     /locus_tag="IBJ56_001716"
     CDS             complement(10778..10954)
                     /locus_tag="IBJ56_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3417970.1"
                     /translation="MREERGIGQNELALALEVSRQTIHAIEKGKYNPSLELSLKMARY
                     FRLTIEEIFQLEEN"
BASE COUNT         3094 a         2322 c         1932 g         3629 t
ORIGIN      
        1 agttatagga aagggtgatt ttaatggagc ttcgtgtgtt gaattatttt ttaactgttg
       61 cacgtgaaaa aacgattagt caagcggcgg aagtgcttca tctttctcag ccaacgcttt
      121 ctaaacaatt gaaggaactt gaggaagaac taggggtaac tttatttatt cgtggaaatc
      181 ggtctattac gttaacagag gatgggcttt atttagctaa tcgcgggaaa gaaattttat
      241 ctttagtgga gttaactact tcgaatttac ttcaaaatga gacgattagc ggaaaaataa
      301 tgattggtgc tgctgaaacg agaggatttg aatttatcgg tagcatgtta catgaactta
      361 gagagaagca ttccgacatt acttttcaat tgcatagcgg caatgcggat gatgttttag
      421 aaaaaattga gcacggttta ctagattttg gtttggtaat taatcctgtg gaaaaactac
      481 aatatgaata tttaccactt aatatagaag atacttgggg aattttagtc aatacaaaac
      541 attctttagc gaaaaaagcg gttgtaactc ctagtgatat tgaagctaat ccgattgtcg
      601 tttccaacca atctttcatt gataatcagc tagctagttg gcttggagag cattttgaac
      661 aattgaatgt aattggtaga tataatttac tgtataatgc ctctttgctc gctaaggaga
      721 acatcgcaag tattctttgt attgatggta ttatcaatac aaagaatact aacctgaagt
      781 ttatcccttt ttcgccgcct ctaactgctg gaattagtat tgtgtggaag aagaatcaaa
      841 ctttctccag tgcttcgaag gaatttttac gattaataaa aaaaacttgc tcaaaataaa
      901 tactttgagc aagttttctt tctatatttc taatcgcaac gtaacagcgc catatgctgg
      961 aatcgtgttg ttgtcatttg caacaacttc ttcgatagca ttcacatact caaacgacat
     1021 atccgagagt gccaactttt gtggtgtgtt agttgggttt tccaggcgga taatgtattt
     1081 atctgctgag tagtaggacg ggtggcacgc tgaaactaag tattctttcg gcaaattcaa
     1141 catacctaac gtttgcttcg cgcctaattt ccgttctgtt ttctggattt tgttatccaa
     1201 gcgatgtaaa aagtgattga acggttggcg ttgataagat acgtttgctt ggttgaacgc
     1261 ttttgttcgt tcagctgttt tatgttcatc gaaagcttgg tccccgaggt aaatggctaa
     1321 tgaaaattca tgtttaccaa gtaactgcgc gccttctgtt tctatgagca cgtgaccttt
     1381 tttcgttgtg tcgcctgatg ctcggcctgg ccggtatgct aaatcaggtt ttccgagttg
     1441 tccggttgtt gccagtagcg tcagtgctaa atattgatcc aattgttggt attctttgat
     1501 gccctgtgtg aaaatggtac aactttctgc ttcatttgtt agcgtcacgc tttgttcaag
     1561 tggttcgatg tcgattggca tttcgctata tgtttctcgc caattcgctg gtacaactgg
     1621 ttttctcttg atatatccga atggaagtga agcgatgttg tagtctgttt tcacacctgt
     1681 gtttactttt aagcgtagac ggtgattttt aatttggtta tctacttcaa ctttaacatc
     1741 cagcagttcg ctaccttttt tcacctctaa aatgagtttg atttgcaggt cgccatgccc
     1801 ttctttcgtc aaacgatcaa gtgggaaatc gctttttcct gttaaaatta aacgttcgac
     1861 ttcgcttgat ttctccgttt tcacttcgga aaaagtgaat aattccgcga tatctccggc
     1921 tagtggtgaa taatcatacg tatctcccgc attcacatca tcttctagtg taataaaaga
     1981 agtgatgcgc tcgccgtttg gtttttcaag agcaatttcg ccattttcaa aagtgatttt
     2041 gtagaaatta ttcgtgattg ccacatcatt ggaagcaatc atcgaatcca gttcgcggtc
     2101 attctcttca aaagcaatca cgcggtaacc aaggcctgga agctccactt tgacgcgcac
     2161 ttgaagcaca tagtagccca gttcttcaat aaatcggttt ccggctggcg tttcttctag
     2221 cacattttcg cgcgatggaa tgaactcttc ttggacaatc gttgcgtccg gaaacgctgg
     2281 gaaatggatg tttttatgct cggttactac ttgtatttct ttatatccgt caaaatcatg
     2341 taaatccgtg ttaaaaacga taatttcgtt cgccgcaagt gataaatcat cggcaatttt
     2401 tttcacaatc gtgttttcga tactatcgca tagttcgtca gcttctttca tccggtgcaa
     2461 aatatcttcg gcaactggat cagaaacgca gcccgccaag ctatcgtgcg cttgaccttc
     2521 taaaagtttc ttccaagtgt gcattagtaa acgctcgcta atagaaattc cagatgcttt
     2581 agcaataaca agaagtggct caatacgagt tagcaatttt tgctcgagtg acgcgctttt
     2641 tagcttaata ttcattcggc tagatccaat agttttatgc actcgcgcaa gaaccggact
     2701 tctaaattcg ccgcgatatt cttctaagtc gggcagctct ctaacatatt gaataaaatc
     2761 ttgataggta ctaagttgat aatcatggcg tcccatcttg ttgatttcca ctaatttttc
     2821 ggcaaagtta ctaataatat tcagctgatc attcccagat ggaattaaaa cttcagttgt
     2881 tttactgtac ttttcaatga aatcaattgc cgggtcgagg cgtccatcca catatgccga
     2941 ggttggttca aggagcatcc ctgtgccgta accttgtggc atattaatcg cataaatcga
     3001 cgcttcttct ccaagtcctt gccatttaaa atatggagac gcaacatgtt caccaagatg
     3061 aatcccacgc cagaaaatca cattatcaaa gccagcatgt tcaagtaaag tcggcatttg
     3121 ggcattaaaa ccaaatgtat ctggcaaata accaatttcc atatagtcgc cgtatttttt
     3181 actatcaaaa atcccaatca tcgcattgcg caaaatcgac tcaccatgcg cgaaaaaggc
     3241 atctgtttgc gtaaaccacg gtccaatgaa aagttgttta tccgcaatta attgcttaat
     3301 atccgctaat ttttccgggt acagtgcgac ataatcatct aaaatcgaca gttgcccatc
     3361 aagtacaaag tttgcttctg ggtgcttttt taattcgtca attacttctg taaaaagttg
     3421 ttcacttaga accagtgcat cggccgaggt aaaataccac tctcggtccc aatgcgtatg
     3481 gttcacaata tgtgctttaa ccatagttac ctccgttttt taagcttccc attctgcttc
     3541 gtcaatttcg tcatcgtagc ttgaaccagc catttcctcg ccagcacttg ctttacgtaa
     3601 agcgactgac atacccgcaa cgattagcgt tccaactgca attgctaaaa tgtaaactgg
     3661 ccaattttca actgtgaacc agccataaaa accactaatt ggcgcttggt taattgcgcc
     3721 aagacctaca gctagcgcgc cgccgacagc agaaccaaga accgtagccg gaataacttt
     3781 aagcggagat tctaccgcga aaggaattgc cccttcacta atcccaacaa gtcccatgat
     3841 aagagaagat tttcctgcct cacgcatttc agtattatat ttacgttttg cgattaaggt
     3901 tgctaaacca agaccaagtg gtgggatgat gattgctact tgtgctgctg tatttggtgc
     3961 ataaattcca cttgttaaaa gtgccatcgc cgttgttaca gctgctttat ttacaggtcc
     4021 gcctaagtca aaaccaacca ttgctccgat aatagccgcc attagaattt gattcgatcc
     4081 agacatacca tttagccaat tttcaagggc tgtatttaag tcagcaaaag gaataccaac
     4141 cacataatta ataataagaa cggtaataag tgtgccaaaa actggtacta aaaataccgg
     4201 tacaatcgaa gccgccgctt ttggcagttt cacgtatttt ttaatcaata gacatgtgta
     4261 accagcgatt aaaccagctg ccagtgcccc aaggaaacca gcgccaatat cacgtgccag
     4321 taaaccacca acaagaccag gtgctagtgc taatttgtcc gcaatcgaat acccgataaa
     4381 tgctgcaata accgggaaca tcattcctag cgccaagcca ccaaaaccat ctaaactatg
     4441 cagtagtgaa attaaactat tcgcactgtc tgcgtatttc gcatcccaaa tatctgtaat
     4501 tccgaaaaac gaaccaccaa cccgagcaat cgccataatc acggcgcctg caataacgag
     4561 cggaatcata tatgaaatac ctgttaaaac gtgttttttc agttcactcc caatttttct
     4621 gaacatggta gatcctcctt atttttcgtc aattaacgca agtgctgcgt tgattacttt
     4681 ttctgcatct ttaatcggtg cgcttactgg aacttccagc acgactttac catcaaaacg
     4741 ttctttgtta cgaacttttg tatctactgc gaaaataact acttcgccga tatttacatc
     4801 tttttcggtt aattcattct caattcctgt tgcgccttgt gtttctactt taatgaggtt
     4861 gcccattttt ttcgcgcctt ttttaagtgc ttgtgctgcc atatatgtgt gcgccactcc
     4921 tgtcgcacat gcggttactg cgataatttt acgtttcata tctctactac gcctccattt
     4981 aaaattcgaa taacttcttc ttcgtctctt gtatttttta aattttcgac aatatcatcg
     5041 tccattagtt tcgttgcaat ttctgcaagg atttttaagt gaccgtctgt tttgtcagaa
     5101 tcagtaatcg ccagtaagaa aatcatattt accggttcgt catccagtga ttcccactca
     5161 atcatttctt tcgttcttgc aaaaacgatg gccgattttg tgacactttc actttttccg
     5221 tgtgggatag caatgttatt tcctattcca gttgttgaat gtgcttcgcg atccaaaact
     5281 gcccgaacat aagtcgcttt atccgctaaa ataccatgtt catctagcat ttctgccatt
     5341 tcttcaattg ctgcttcttt tgtcgtcgcc tctaaatcaa agacgactaa ttcttttgtt
     5401 aaaatatctt ttacttccat tacatcccat cctttaacaa atgctcataa atttctgcgg
     5461 cactttttag ttgtgtcagc ttctcaagcc attttttatt atcaatatat ttataaaact
     5521 gttcatacat cgcgtctaaa ttaatgccat tttgttcggt cagagcgata aaaaagattt
     5581 tatccacctc gactaagccc catttcactg gatttttaag tgtggcaata gcgatgtgcg
     5641 attcattaat aagtgcagga tctgcgtgtg gtgtcgccat ttcttcaaaa gaagtgaacg
     5701 ataacgcttc tctttttagc gcactttcaa caattcctga tttagcaata ccaagattca
     5761 caagcttatt accaatttgc gtgattgcgt cttccatcgt tgcaacatct agcttcgcaa
     5821 aaatagtttt cggttcaatc aagtcaacaa atggttggct gcgtttcttt ttcttgcgtc
     5881 tcgttcgttc gatttggctt tcaacttgtt gtaaatcggc tttactcatc atcggactga
     5941 caacaatact tggaatatct tccagttcga gataaatcgt gctgatgact aaatccacat
     6001 cgacttctgt ttccattaac gcctgaacgg ataatatttt ttcaatcgta atcattggaa
     6061 aatatttttt aattctcgcc gcaagtaatc ttgatgaacc aagcccggta ctgcatacaa
     6121 gtacaactcg aatttggtcg gggaaagaac gacttctttc tttgtatgcc tcaaaatgta
     6181 gcgcgatata cgccgtctca tcttcgttca cttgcacatc gtacttttgt tcaaattttg
     6241 ctttaaaata tagcgcttct tcaaacgctt ggggaaagtt ttgcttaatt ttgctaaggt
     6301 acggattttt aaaatgcata ccaagtttta accggttaat ggcggatttc atgtgtgtcg
     6361 tcaagtcatc cagtaagctt ttatcgtaat tcccttccgc taaacacgtg ctgacaaatt
     6421 ctgccacatc gtcttctttt ggtcgaacgc ttacaagtaa ctcatcatgc tgttggttat
     6481 atgctgctgt taaatgcaac tgaatatagc cgacttcaaa tgctggaatt ttaatatcca
     6541 aacggtcttc tagcatgcta acgaggattt ccgtattgtt tcgctgcgaa tcaaatacat
     6601 ctttcattgg atcgctctca acattttcga tatactctcc tgctcgaata cgctctaccg
     6661 caatcgcaag atgaatgaca atcgattgaa acgcataatc agtaaaagca aaatcatgtc
     6721 gctcactaaa tgcttgaaca atcgcaatga tttctttcaa gccctcttct ggaaaaattc
     6781 cggtgacatc ggctttaatc gtgtcaaaag cttggaggac cttttcgcct tcttgcttta
     6841 aataccaatt attgccccaa aaattattaa taaatttcga tgttaaggcg cgcttttctc
     6901 gttcactaat aaggagtttc atgcccttac taggtttctt atacaaagta ataccttctt
     6961 tttccagcat tttcgtaact tcaaccatat ttttctcaat cgtgctccgg ctaatgtaaa
     7021 gttcgtctgc aagctgatga atcgtgatat agtcgtctgc tttaagcaat ttactgaaaa
     7081 tgtagataac ccgctcttct ttcgttgatg ggattgggct gacttggtta tctagaaatc
     7141 ggctaacttc ggcaaaagcc ttgttatcac cctcaatata cacaccgatt tttggtttac
     7201 ggaccactgt catatcaaaa tcctttagaa aaacatcgat ttccttcagt gagtttgata
     7261 ctgttttttc tgaaagtccg agatgattcg cgatagttcc aacacgtgtt tgacctgtct
     7321 tcattagaaa ctgaatgata tttttttcgc gatttgcaat cattttcgtt accgctttca
     7381 tttttaattt tcctttccct acgcttattc tattacaaag actcatcccc agaaaactac
     7441 gaaaattacc gcattgaata ccgtaatttt gggatattgc tgttcatttt ggagaatggt
     7501 agatttaaat tagcaccact aacctagaaa ggaagcttat tttatgtcta tttatcttat
     7561 tgcgttactc cctgttcttg ggtggggatt tatgccaata attgcgaact tacgaaaaag
     7621 cacccccgag gaacaactac tggggacttc gattagcgcg ctattatttg ctttcatttt
     7681 gttctggatt ttatcaccag aaataacggt tctttctttt atagtgagtt ttgtttcggg
     7741 tatcttttgg agttttgggc aattactgca gtttaaaggg attgcggctt ctagtgttgc
     7801 gaaggcaatg ccgatttcaa acggaactca gctagttggc gcaacgcttt ttgctgttct
     7861 tgttttccgg gaatggcaaa cggttacggc tgttatcatc ggagttgttg cagtaatttt
     7921 aatcttgatt ggggtggtaa tgaccgggtt tcaaaaacgc gggaatcata tcacggagtc
     7981 ggtttcattt catgtctacg gtatcgttat tctatcttct ttctttttaa cgctttacgt
     8041 agtgacaaac cagctttttg atgtcactgg cttttctatc attttaccac aagccatcgg
     8101 tatgctgaca tgcgccattg gtattaactt agcgaaaaag actgctattt cccgaaaaaa
     8161 tgttacattt aacttaatga ccggattatc gtggtcaatc gccaatttag gcatgttctt
     8221 agcgactgct gtacttggtg tcgcaacgag cttctcgatt tcacaagctt gcgttatcgt
     8281 cgcaacaatc ggcggtatcc tcattttcaa acagaaaaaa agcccgctag aatggacttt
     8341 tatcctttct ggcatactgt taataatggt gggcgtcgtg ttccttagtt tattgaaata
     8401 aaaaaagcca aagaccacct caaggtcttt ggcttttttt catatactct tctataactt
     8461 gtaacacgcc cgcttcttta ttagaagcag ccacatgttt cgcagcagca agaacttccg
     8521 gactgctttc ttgcattgcg taactatgcg acgttaattg caacatttcg atatcattat
     8581 tcgcatcacc aaaagcgagt aaatcatctg gcgccacttg ccattcattc aatagttgct
     8641 gaatcgcgct ccctttcgtc acacccggaa ttataatatc aatacttcca tgcccgctcg
     8701 acacagcgcg aatttcaccg gcaaacattt gattcaaatc ttccacaatt tgccctgtct
     8761 tagccacttc cacatcaagc gcgaacttaa taaacgtatc atccggaagt acatcgaacg
     8821 aatccaactc ttgcaactca aaataatact ttttcgcaaa tgctttaaaa tcgggatcgg
     8881 cggcttttaa taaatacgca ctcttcaccc cacaaagaat cacttgcaaa tcttgatatt
     8941 cttgaatcaa cgtccgcaaa atcttttgaa ctaatctttc ctcaaaacga ttcacactcc
     9001 gaagttcccc ttgatgaaaa ataaccgccc cattttcagc aacataaaaa agctcctcat
     9061 ccttccctgg aaaaaaagat ttaagctgat aatattgatt cccactcgca acaataaatt
     9121 taatcccacg cttcattaat tcaacataaa tcttctcaaa tctagcacga tcatattcac
     9181 catttccatc taaaaaagtc ccgtccatat ctacagaaat cgctctaatc atccgtttaa
     9241 gctcctttta aagttaattt tattctatta taccaaattt tttcgcgcca cattgctaca
     9301 gcttgtttaa ttataaaata tgctatacta aactagccca tatcataaat aacaagacac
     9361 gaaaggaggg cccaaacctt gtcaaaagga agattagaag catttagtga tggtgttttt
     9421 gcaattataa ttacaatcat tgttttagga atgactttac cggatgtatt taccgcagct
     9481 agcacacaag cattcttatg ggaaattttt atatttatcg aaggcggatt aattatcgga
     9541 caattttggt attcacatag caggctgttt gatcaagtca cattcatttc cacatctgcc
     9601 gtcttattta atattttatt tttattagtt ttgtcactta tcccattatt tacaagagca
     9661 atcatgcaac atccagatat gaccgcaccg attattggat ttgttattac tattttgatt
     9721 acttcggtgc tattccaatt attgcatcac gcggtaaatg gaaaagattc aggtatcgac
     9781 aattggaagt ttcgaatctc tagtttcata tttgtaatca tgcttggtat tatcagtttc
     9841 ttcgctccac aaatatccac cattttattt attattttcc caatcgctgg ttggattatt
     9901 caactcacaa accgccgtca gcctccaaaa taaaaaaagt cagcgaaaaa tttcgttgac
     9961 ttcgctttac tattttgtta ttctggcact aacaacaaga aaggagcata attatgagaa
    10021 gcctggatgc agtagaaata ctcagacgtg gcgaaaccat tgagcgttat aaagaaggcg
    10081 gaaattcaat gttacctttg attaaatcga tgcaacctgt tcgtttagaa ccgattggca
    10141 tgagagaact caaagtcaac gatatcgtat tttgcaaagt tcgcggtagt ttttttacac
    10201 ataaaatcag taaaatccgc ggtaaacaat atcaaatttc taataatcac aaacacgtga
    10261 atggttggat tacacgtaat agtatttatg gcattgtcac caaaatttgg taaatgctag
    10321 gtaacatgca acgaacaagt tggatgtttt ttattttgcc taaaatcata ctttttttcg
    10381 gataatttct agaacaatca tatacgcaaa acagaagata agaaaaataa tcgtcagact
    10441 cgaaatggag atttgttcaa tcccatttaa attaagaaca attaacacaa ttggtatcgt
    10501 caaagctaaa acaatcagca aataatggga gaatgttttg cgattgttga tatatctttc
    10561 atctttttct agtttttctt tctcatattc ccgcttcgtt ttttcttcag ataagaatac
    10621 agaactcagt gtaccaatta aagccgcaat aatcataaca attggtgtac cgatatctcc
    10681 aaatattttt tcccctttaa ttattcctaa aagtggatac atatatataa taactaccgc
    10741 aaccataata cctcgattaa taatgtatcg tttcatgcta attctcctcc agttgaaaaa
    10801 tctcttctat tgttaaacga aaatagcgtg ccatcttcaa acttagctct aaactaggat
    10861 tatatttacc tttttcaata gcatggattg tttgtcttga aacttctaat gctaaagcta
    10921 attcattttg tccgattcct ctttcttccc gcagctgttt cactttatta cggactt
//
LOCUS       DABQVC010000095        10875 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.095,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000095 DABQVC010000000
VERSION     DABQVC010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10875
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.095"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(108..1280)
                     /locus_tag="IBJ56_001717"
     CDS             complement(108..1280)
                     /locus_tag="IBJ56_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAM3417971.1"
                     /translation="MKGSFTKFKQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPL
                     MVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKRGWAIALLYLVIIGLLILLFSFVI
                     PAVKDQIVSLFKSFPGYWDQITQKFDEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTS
                     VINSAISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQ
                     VLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPA
                     IAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILV
                     AGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRISGLYGEQPESEYVESPTEEKEL"
     gene            complement(1396..3726)
                     /gene="secA2"
                     /locus_tag="IBJ56_001718"
     CDS             complement(1396..3726)
                     /gene="secA2"
                     /locus_tag="IBJ56_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system translocase SecA2"
                     /protein_id="HAM3417972.1"
                     /translation="MRQNYDDRKIVKQYREIARQIVKKEGLYKNMDQAELCEQTNFWR
                     EKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQLIGALVLGDGKVAEMKTGEGKT
                     LMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDIAQKK
                     AIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLI
                     SDRKEEDLSLYHTANKLVKKMMKDDYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAE
                     AQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPGRRFNDGLHQAIEAK
                     EGVEVKEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRV
                     NREDMQDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPH
                     QVLNAKNHAQEAEIIAKAGKRGMVTLATNMAGRGTDIKLDPDVHKLGGLAVIGTERHE
                     SRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESKSWEKLSTKLKRKAPRDGKPV
                     NSRKIHAVVVDAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDLLLERNKLGVSS
                     EKILREVAEYSFIHPSDIPEEELEIYYSRQKELLGGTKFPISFDQVTLMDPREVVEEI
                     VSWHKKERNKFPAETIAAIEREVYLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLV
                     MYQKEGAQLFEKFQADYHFYFAHALLELDPDGLIQG"
     gene            4151..5578
                     /locus_tag="IBJ56_001719"
     CDS             4151..5578
                     /locus_tag="IBJ56_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion associated endopeptidase"
                     /protein_id="HAM3417973.1"
                     /translation="MKKATIAATAGIAVTAFAAPTIASASTVVVEAGDTLWGIAQSKG
                     TTVDAIKKANNLTTDKIVPGQKLQVNEVAAAEKTEKSVSATWLNVRSGAGVDNSIITS
                     IKGGTKVTVESTESNGWNKITYNDGETGFVNGKYLTDKVASTPVAPTQEVKKETTTQQ
                     AAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVKSGDTIWALSVKYGVS
                     VQDIMSWNNLSSSSIYVGQKLAIKQTANTATPKAEVKKEAPAAEKQAAPVVKENTNTN
                     TNATTEKKETTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNNTNTSTPSKNTNTN
                     TNSNTNTNSNTNANQGSSNNNSNSSASAIIAEAQKHLGKAYSWGGNGPTTFDCSGYTK
                     YVFAKAGISLPRTSGAQYASTTRISESQAKPGDLVFFDYGSGISHVGIYVGNGQMINA
                     QDNGVKYDNIHGSGWGKYLVGFGRV"
     gene            5666..6850
                     /locus_tag="IBJ56_001720"
     CDS             5666..6850
                     /locus_tag="IBJ56_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HAM3417974.1"
                     /translation="MKNLVKVKVFPKFTKGYKEGYPLILKERMEKWPKELQEGDVLEL
                     TDTNGQFIARGYHGEQNKGSGWLFTWDKKQQLDEDFLTNLITTAIEKRQFLFADDSTT
                     AFRIFNGEGDGLGGFTVDFYDGYLVIQWYSLGIYAFQKMIIDIFLSFPEIKGIYEKRR
                     FQEDTKDDFVAGQKATFPLIIKENGINYATYLDDGWMTGIFLDQRDVRRRISEDYSVS
                     KNVLNTFSYTGAFSVAALFGGASKTTSVDVAGRSLSKTKEQLEVNGLDPNEQAIIVED
                     VFHYFKYAARKQLTFDLVVVDPPSFARTKKVTFRAAKDYPAMLREIIDITAPNGTIVA
                     STNYAGFGMKAFKKLIAEAFQTSDRTYKIVETHSLPADFTVNKNFPEGNYLKVLFLTL
                     DI"
     gene            complement(6881..7537)
                     /locus_tag="IBJ56_001721"
     CDS             complement(6881..7537)
                     /locus_tag="IBJ56_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3417975.1"
                     /translation="MFAYDIYEPIGRKDEDTFPVIFALHGFGGDELEMAGRLELLMDR
                     FVVVSMRGDVEYGPAYGFYHMVTEGDPNPQEVDYISLRVAQFIDKICTDYISIDKEQV
                     FLAGFDQGAVLTISIMQSYGGQYKAAALLSGRLPYYMEERPANLMLKDKRIFIGHGIE
                     DAVIQISEADDIARLFEKMGCHVEKHRYFIGHNVNEAEEDDLYRWFESFLPNQPVKNK
                     "
     gene            complement(7559..7768)
                     /locus_tag="IBJ56_001722"
     CDS             complement(7559..7768)
                     /locus_tag="IBJ56_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417976.1"
                     /translation="MANIEYEIIEEIGVLSENARGWRKELNKISWNGRPPKYDIRDWS
                     EDHEKMGKGITLTDEEAEVLKKLLD"
     gene            7933..8685
                     /locus_tag="IBJ56_001723"
     CDS             7933..8685
                     /locus_tag="IBJ56_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HAM3417977.1"
                     /translation="MSTETTDYLLETCLMAGKIMMESGAEMYRVEDTMNRIATIASNK
                     KGISFVTPTGLFMSLEGERNVQLQQIPTRTINLEKVSMVNEFSRDFAEKRISLKELHT
                     KLVNLDKDVRYFPIWLQIIAASLVSGSLMVIFGGGWFDFIPTCIIGAIGFIIFYYTQI
                     FMKVKFLAEFLASLSVGLLAVLTISIGWGINLDTMIIGGVMPLVPGVPITNAVRDLIA
                     GHLLSGMARGTEALLTSCAIGIGIAVVFRFFL"
     gene            8699..9157
                     /locus_tag="IBJ56_001724"
     CDS             8699..9157
                     /locus_tag="IBJ56_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter"
                     /protein_id="HAM3417978.1"
                     /translation="MDLVWTIIIQLVLSYVATVTFAIITNVPKRALNACGITGTFGWM
                     AYWTLMQMDSGTGASSLAGAFVVAVLSHFFAKYKKLPITIFNVPGIVPLVPGGLAYQA
                     VRNFVLGDYTEAIGFSVQVTVVAGAIAAGLMLSEVFNHSIRTFRERKERI"
     gene            complement(9212..10675)
                     /locus_tag="IBJ56_001725"
     CDS             complement(9212..10675)
                     /locus_tag="IBJ56_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HAM3417979.1"
                     /translation="MKKKYILCLFAVMLFCTGFLFGNSQVDAAETDTSNVTYKYIDIS
                     TLTETQKNSIIKGKPNETLTNDYENYSFVYQKNTSGPTTNTDNTSDNNKDQNGTLLKA
                     GDVGPNIYLVILGFILLGSGIGLLTLKKRHAKQLLVFLLVLGGSSLLVGSIVQATENS
                     NLKTQESQTVVKGTKETKQPESIAGYTYVGYIHTSKNNTAPPVEKGIVTVNYQDEQGN
                     SVAATETLEGDIGKPYQTSMKNIEGYTWKEVKGEATGTFTEKAQVVTYVYQKVSVATV
                     TVRYLDQDGKPIHEPQTISGNVGEPYDASTDKYKLQIDGYVLDTTKLPNNANGTFTNQ
                     ATQVTYIYTKEAQDVTITIKFVDNNGNPFILTDLTTYKNGDLVPVYPNLDQYHMRLNY
                     NQQIYSQGEAVSDIVLSAKEGETYSLPERMTFNIIDDKGNEIPYVISQNPDFSSSGIE
                     KWENYRSIPANHEGTLTGENVVVTYQIFVYGVMIPAP"
BASE COUNT         3341 a         2160 c         1898 g         3476 t
ORIGIN      
        1 tcaccttgta aagagaaaaa ttatgtcttt tttgtgaaca ttagttttaa cacaacaaaa
       61 aaacactatt agcagaaaaa tattttctaa ctaatagtgt ttttatttta taattctttt
      121 tcttctgttg gtgattctac atattcactt tcaggttgtt ccccgtaaag cccagagatt
      181 cgtttgaacc aaataaatac atgcgttacg atgactttaa gtaccgcata acctggtact
      241 gcgaagataa cacccagtac accgaataga tttccagcta ctaaaataac gaataaaatc
      301 gtgattggat gtacttttag cgttttaccc atgacttgag gagaaataaa tttaccttca
      361 agtaattgaa cgacacacca gactatgatt aatttaatta ataaccaagg tgaagtaaca
      421 atcgcgataa taatcgctgg tgtaatcgca attgctggtc ctaaataggg gacaatacta
      481 gtacaagctg caataatagc aagtgttaat gcatatggta gaccgataat taaataaccg
      541 ataaatagca aaataccaat acacaaactt acaataattt gtccacgaat atatgaacta
      601 atttggtggt ttgcttcacc aagtacttgg cgagtatgcg cacgaccatt tactggtaac
      661 atttttagta ggaagtcggg taattttttt ccatctttta acaagtagaa taaaacaagc
      721 ggcgtagtta caatcgctaa aacaacctct gttaccgttc caacaatact accaatactt
      781 gaaatagcac tattaattac agatgttcct tttgtggaaa gagtcttcat gatatcgctc
      841 atgttcgtat ttaatttatc ttttatttga tcaaataagc tcgagcgact gaactcatca
      901 aatttctgtg tgatttggtc ccaatacccc gggaatgatt tgaacaagct aacaatctga
      961 tctttcacag ctggaatgac aaaactaaat agtagaatga gtaaaccgat aatcactaag
     1021 tatagtaatg caatcgccca acctcgcttc cacttatgtt tctctaacca atcaatgata
     1081 ggattaaata aatagtaaga tatcccagct aaaatgattg gtgcagcaac ggttttaaga
     1141 attaccatta acggatcaaa aataaaggca atcttagtta atacataaat atcaagtgct
     1201 actaaaagaa aaattagtaa ccctaacaca aatttgtttt ctataaaaaa ttgtttaaac
     1261 tttgtgaatg accccttcac tttaccaccc tcttttgtct aaatttattt tcgtttggta
     1321 ctattatata gattaatacc ctcgttctca ttaaattacc cataaatttg gaaaaaatca
     1381 gacgcaagtt gtattttagc cttggattaa gccgtctgga tcaagttcaa gtaaggcgtg
     1441 agcaaagtag aaatgatagt ctgcttggaa tttctcaaat aattgagccc cttctttttg
     1501 gtacataact aatggatctt gttgtccata tgctcgcaag tggatacctt cgcgtaattg
     1561 taccattgcg tccagatgca taacccacat ttggtccatt aaattcaaat agacttctcg
     1621 ttctattgca gcaatcgtct cagctgggaa tttattgcgt tcttttttat gccaagatac
     1681 gatttcttct accacttctc tcggatccat cagcgttact tgatcaaaag aaatagggaa
     1741 tttcgtgccg ccgagcaatt ctttttgacg tgaataataa atttctaact cttcttccgg
     1801 aatatcactt ggatggataa atgaatattc ggcaacttca cgtagaattt tttcggaaga
     1861 gactccaagt ttatttcttt ctaataataa atcgcgttct ttatatacca ttttgcgttg
     1921 taaatcgatt acttcatcgt aggaaagcaa atctttacga atatcgtagt ttgctccttc
     1981 taggcgtttt tgtgcatcca caacgacagc atgaattttc cttgaattaa ctggtttccc
     2041 atcacgtggt gctttgcgtt taagtttcgt ggaaagtttc tcccagctct tactttcaaa
     2101 ttgttctaat aaatcatctt ctaaagaaat cataaactta ctgaaaccag ggtcaccccg
     2161 tcgtccagaa cgtcccatta gctgtagatc tatccgacgg ctctcatggc gctccgttcc
     2221 aattacagct agtccgccaa gcttatgtac atctggatcc agcttgatat ctgtcccccg
     2281 accagccatg ttcgttgcta aagttaccat tccgcgtttc ccagctttgg caattatttc
     2341 cgcttcttgg gcatggtttt tcgcatttaa tacttggtgg ggaattccag cagcgtctaa
     2401 taagccactg atccattcat tacttttaat agaagaagtt cctattaaag ttggctgtcc
     2461 tttttcatag cgccatgata cttcatacac aatcgcacga cctttttcct ttttcgtata
     2521 gaaaatatca tcttgcatat cttcccgatt tacacgtaaa ttggtgggga ttactacgac
     2581 atccatgtta taaatttgac ggaattcttc ttcttcggtt ttagccgttc ctgtcattcc
     2641 agaaattttc ttatacatcc ggaagtagtt ttgaattgta attgttgcta gcgtacgtga
     2701 ttcttcttta acttccacgc cctcttttgc ttcgattgcc tgatggagtc cgtcattaaa
     2761 gcgccggcct ggaagcgcac gaccagtatg tggatcgata attaatactt catcatcaag
     2821 caccacataa tctttatctt tatgcatcaa gaaatgagct cgcattaaaa gcatcgtaat
     2881 tctaagttct gactgcgcct ctgcggaata aagtgattcg acaccccaaa acttctgggc
     2941 tttctcaatt ccagcatcat tcaaccaaac aaagcgttta tgttcttcca tctcataatc
     3001 atctttcatc atcttcttca caagcttatt cgctgtatga taaagggaca aatcttcttc
     3061 tttacggtca gaaatcagta ggggcgttct cgcttcatct attaaaattg aatctgcttc
     3121 atctattaaa acaaaatcaa gtccactttg tactttatct tctttttggc gtaccatatt
     3181 gtcgcgtaag taatcaaaac caaattcaga agccgttcca taaataacat ctgctgtata
     3241 aatggccttt ttttgggcta tgtctaaacc agattcattt aaagcaacgg aaacaccaag
     3301 atattccagc acttgtccaa tttcttcccg gtcacgtcta gctaaatact cattggcagt
     3361 cacaaggtgt acacgattac cacgcattac ttctataaac ataacaaata acgacatcaa
     3421 tgttttacct tcgccggttt tcatttctgc cactttgcca tcgccgagaa cgagcgctcc
     3481 aattaattgc actacaaccg catccaaacc aataattcgg ctagctgctt ctctcgccaa
     3541 agcaaaaata ttaattttat ctcgatcagt catcggtttt gtcttaaact tctcgcgcca
     3601 aaaattagtt tgttcacaaa gttcagcctg atccatattt ttatataagc cctctttttt
     3661 tacaatttga cgggctattt ctcgatactg tttcactatt tttcgatcat cataattttg
     3721 tctcattata taacatcctc cataccttct attatagaat accataaact catctggcaa
     3781 ttcatttcga gtcacgaaga acggaaaaac tgccgatttt tatattacaa atgtattaag
     3841 tttttctatt aacaaaaaac aataggtttc ccatagcgaa agttgttgat taacgttcac
     3901 atcccactta cactataaag gtttacccag cagtacatct caagccctaa gaatacacgt
     3961 tcgcttttca actgttacaa aattattaca aatagttggt atagtcctct atagcctttg
     4021 gagctattat ctcatcattt gttttttagg tgaaaactgg gtaaacttag tattaatcaa
     4081 tataaaatta attctcaaat acttaattac gtactgggat tttctgaaaa aagagaggag
     4141 ttttatgaat atgaaaaaag caactatcgc ggctacagct gggattgcgg taacagcatt
     4201 tgctgctcca acaatcgcat ccgcaagcac tgtagtagtc gaagctggtg atactctttg
     4261 gggtatcgca caaagtaaag ggactactgt tgacgcaatt aaaaaagcaa acaatttaac
     4321 aacagataaa atcgtaccag gtcaaaaatt acaagtaaat gaggttgctg ctgctgaaaa
     4381 aacagagaaa tctgttagcg caacttggtt aaacgttcgt agtggcgctg gtgttgataa
     4441 cagtattatt acgtcaatca aaggcggaac aaaagtaact gttgaatcaa ccgaatctaa
     4501 tggctggaac aaaattactt acaacgacgg ggaaactggt ttcgttaacg gtaaatactt
     4561 aactgacaaa gtagcaagca ctcctgttgc accaacacaa gaagtgaaaa aagaaactac
     4621 tactcaacaa gctgcacctg ctgcagaaac aaaaactgaa gtaaaacaaa ctacacaagc
     4681 aactacacct gcacctaaag tagcagaaac gaaagaaact ccagtggtag atcaaaatgc
     4741 tactacacac gctgttaaaa gcggtgacac tatttgggct ttatccgtaa aatacggtgt
     4801 ttccgttcaa gacattatgt catggaataa tttatcttct tcttctattt atgtaggtca
     4861 aaaacttgct attaaacaaa cagccaacac agctactcca aaagcagaag tgaaaaaaga
     4921 agctccagca gctgaaaaac aagctgcacc agtagttaaa gaaaatacta acactaacac
     4981 aaatgctact acagagaaaa aagaaacaac acaacaacaa acagcaccta aagcaccaac
     5041 agaagctgca aaaccagctc ccgcaccatc tacaaacaca aatgctaata aaacgaatac
     5101 gaatacaaac aatactaata caagtacacc atctaaaaat accaatacta atacaaactc
     5161 caatacgaat acaaactcaa atacgaatgc taatcaaggt tcttctaaca ataacagcaa
     5221 ttcaagtgcg agtgctatta ttgctgaagc tcaaaaacac cttggaaaag cttattcatg
     5281 gggtggtaac ggaccaacta catttgattg ctctggttac actaaatatg tatttgctaa
     5341 agcgggaatc tcccttccac gtacttctgg cgcacaatac gctagcacta caagaatctc
     5401 tgaatctcaa gcaaaacctg gtgatttagt attctttgac tatggtagcg gaatttctca
     5461 cgttggtatc tacgttggta atggtcaaat gattaacgcg caagacaatg gcgttaaata
     5521 cgataacatc cacggctctg gctggggtaa atatctagtt ggcttcggtc gcgtataatt
     5581 aataacttaa agtaacctgt ggagcaagca gttcgcttca caggtttttt gttggaaatt
     5641 ttatcttaat gaaagacggt gcatgatgaa gaatctagta aaagtaaaag tttttcctaa
     5701 gttcacaaaa ggctataagg aaggttatcc ccttattctt aaagagcgta tggaaaaatg
     5761 gccaaaagaa ttacaagaag gcgacgtatt agaattaaca gatacgaatg gtcaatttat
     5821 tgcaagaggc taccacggag aacaaaacaa aggcagcggc tggcttttca cttgggacaa
     5881 gaaacagcaa ctcgatgaag actttttaac gaacctaatt acgacagcaa tcgaaaaacg
     5941 tcaatttcta tttgcagatg actctactac tgcttttcgg atttttaatg gcgaaggaga
     6001 tggacttggt ggtttcactg ttgattttta tgatggttat ctcgtaattc aatggtacag
     6061 tctaggcatc tacgctttcc aaaaaatgat tattgatatt ttcttatctt ttccagaaat
     6121 aaaaggtatt tatgaaaaaa gacgttttca agaagataca aaagacgatt tcgtcgccgg
     6181 tcaaaaagca actttcccac ttattattaa agaaaatggc attaattatg caacttattt
     6241 agatgatggt tggatgacag gtatctttct agatcaacgg gatgtgcgga gaagaattag
     6301 tgaggattat tctgtttcaa aaaatgtctt aaatacattt tcgtatacag gggcattctc
     6361 ggtagcagct ttatttggtg gcgcgagtaa aacgacaagc gtagatgtgg ctggtcgttc
     6421 gctcagcaag acaaaagaac aattagaagt aaatggtctt gatccaaacg agcaagcgat
     6481 tatcgtagaa gatgttttcc attatttcaa atatgcagcg cgcaaacaat taacttttga
     6541 tttagttgtt gttgatcccc caagctttgc acgcacaaaa aaagtaactt tccgagcggc
     6601 gaaagattac cctgctatgc ttcgtgaaat cattgacatc actgcaccaa acggcaccat
     6661 cgttgcttca acaaattatg caggattcgg tatgaaagca tttaaaaaat taattgcgga
     6721 ggccttccaa acaagcgacc gtacttataa aattgttgaa actcattcct tacccgcaga
     6781 tttcacggta aataaaaact ttcctgaggg gaattattta aaagtgctct ttcttacttt
     6841 agatatctaa aaaacagcga ccgagtgcgg tcgctgtttt ttatttattt ttcactggtt
     6901 ggtttggcaa aaagctttca aaccatctat ataagtcatc ttcttccgct tcgtttacat
     6961 tgtgaccgat aaaataacga tgcttctcca cgtgacaacc cattttctcg aaaagtcggg
     7021 cgatgtcatc tgcttcagaa atttggataa cagcatcttc tataccgtga ccgataaaaa
     7081 ttcgcttgtc tttcaacatt aagttagcgg gtctttcttc catataatac ggcaaacgcc
     7141 cgcttaacaa ggctgctgct ttatattgac caccatagct ttgcataatg gatattgtta
     7201 gaactgcgcc ttgatcaaat cctgcaagaa aaacttgttc tttatcaatt gaaatgtaat
     7261 ccgtacaaat tttatcaata aattgtgcga cacgcaggct tatataatct acctcttgcg
     7321 ggttgggatc accttctgtc accatatgat aaaaaccgta agccggacca tattctacgt
     7381 ctccacgcat ggaaacaaca acgaaacgat ccattaataa ttctagtcgt cccgccattt
     7441 ctagctcgtc cccaccaaaa ccatgaagag caaaaatcac tggaaaagta tcttcatctt
     7501 ttctaccaat tggttcgtaa atatcataag caaacattct cattctttac accagccctc
     7561 aatctaacag tttttttagt acttctgctt cttcatcagt tagtgtaatc ccttttccca
     7621 ttttctcatg atcttctgac cagtcgcgga tatcgtattt aggtgggcgg ccgttccagc
     7681 tgattttgtt taattccttc cgccaaccac gcgcattttc agataatacg ccaatttctt
     7741 cgatgatttc atattcaata ttcgccaaaa taatccttat cctttctgat tctatatcta
     7801 ccatactatc aaatatttac cccaaatcac atcgaaacaa tcacaaattc aaaaaatgca
     7861 cccttcccac tagaattttt gatttgattg cgttacgatt gagaaggaat aaagggttgg
     7921 aggtgcttag ttatgtcgac tgaaacaaca gattatttgc tagaaacatg cttaatggca
     7981 ggcaaaataa tgatggaaag tggcgctgaa atgtatcgcg tggaagatac aatgaaccgc
     8041 attgcaacca tcgctagtaa taaaaaaggg attagtttcg tgacgccaac tgggcttttt
     8101 atgtcacttg aaggtgagcg taatgtacaa ttacagcaaa ttcccacaag aaccattaat
     8161 ttagaaaaag tatctatggt caatgaattt tccagggatt tcgcggaaaa gagaatttcc
     8221 ttaaaagaat tacatacaaa gctcgttaat ttagataaag atgttcgcta ctttcctatt
     8281 tggttgcaga ttattgcggc atcactcgtt agtggatcgt tgatggttat ttttggcggg
     8341 ggttggtttg attttattcc gacttgtatc attggcgcta ttggttttat tattttttac
     8401 tacacgcaga tttttatgaa ggtgaagttt ctagcagaat ttttagcttc attaagtgtc
     8461 gggctcttag ctgttttgac gatttcgatt ggttggggta ttaatctgga cacgatgatt
     8521 atcggtggcg tgatgccgct tgttcccggg gtgccgatta cgaatgcggt tcgggatttg
     8581 attgctgggc atttgcttag tggaatggca cgtggaacag aagcgctact tacttcttgt
     8641 gcaataggaa ttggaatcgc ggttgttttc cgctttttct tataaaggag gcgctataat
     8701 ggatttagtt tggactatta ttattcaatt agtgctaagt tacgttgcga cggtgacgtt
     8761 tgcgattatt acaaacgttc cgaaaagagc gttgaatgct tgtggtatta ccggaacatt
     8821 tggctggatg gcttattgga ctttaatgca aatggactct ggaacaggcg catcctctct
     8881 agcaggggct ttcgtcgtcg ctgtactcag tcactttttt gcgaaatata agaaattgcc
     8941 aattacgatt tttaatgttc cgggaattgt cccgctcgtt cctgggggac ttgcttacca
     9001 agctgtgcgt aattttgtat taggtgatta tacggaagca attggctttt ctgtgcaagt
     9061 aacagtcgtt gctggcgcga ttgccgctgg attaatgtta tcagaggttt tcaatcatag
     9121 tattagaaca ttccgtgagc gtaaagaacg tatttgaaaa aaaccaatct ctaatagaga
     9181 ttggtttttt tcaaatacac ggcttctcac tttatggcgc aggaatcatt actccataaa
     9241 caaatatctg atacgtaacc actacatttt ctccagtaag tgtcccttca tggttggctg
     9301 gtatacttcg gtagttttcc cacttctcaa tcccgctact actaaagtca ggattttgcg
     9361 aaatcacata ggggatttca ttgcctttgt catctattat attgaaggtc attctttctg
     9421 gtaaggaata cgtttctcct tctttagcag aaagaacaat atcagatact gcttctcctt
     9481 ggctatagat ttgttgatta taatttaatc tcatatggta ttggtctaaa ttaggataaa
     9541 caggtactaa atcaccattt ttataggttg ttaaatccgt taaaataaat ggatttccat
     9601 tgttatcaac aaacttaatt gttatggtaa catcttgtgc ttctttcgta taaatataag
     9661 ttacttgcgt ggcttgattt gtgaacgttc cattcgcatt gttcggtagt tttgttgtat
     9721 ctaaaacata accatcaatt tgtaatttgt atttatctgt tgaagcatcg taaggttcgc
     9781 caacatttcc gctaattgtt tgtggctcgt ggattggttt tccatcttga tcgaggtatc
     9841 taacagttac agtagctacg gacacttttt gataaacata agtaacgact tgtgcttttt
     9901 ctgtaaaagt cccggttgct tctcctttga cttctttcca cgtatagccc tcgatatttt
     9961 tcatagaagt ctgatatggt ttgccgatgt cgccttctaa tgtttcagtg gccgcaactg
    10021 aatttccttg ttcgtcttga tagtttaccg ttacaatccc tttttcaacc gggggcgctg
    10081 tattattttt acttgtatgt atatatccta cgtatgtata ccctgcaatt gattcgggtt
    10141 gtttcgtttc ttttgttcct tttacgacgg tttgagattc ttgggttttt aagttactat
    10201 tctctgttgc ttgaacaatc gacccaacta acaaactact accgccaagg acaagaagaa
    10261 atactaacag ctgcttagcg tgtctttttt tcaatgtaag aagcccaatg ccacttccta
    10321 ataaaataaa ccctagaatg actaaataaa tatttgggcc aacatctcca gcttttaata
    10381 gtgttccatt ttgatcttta ttattgtcag aagtattatc tgtatttgta gttggtcctg
    10441 aagtattttt ttgatacaca aaggaatagt tttcataatc atttgtaagt gtctcgtttg
    10501 gcttcccttt gataatacta tttttttgtg tttccgttaa tgtgctgata tcaatgtatt
    10561 tatacgtgac attgcttgta tccgtttcag cagcatcaac ttgcgaattt ccaaaaagga
    10621 aacccgtaca aaataacatc actgcgaata agcaaagaat gtattttttc ttcatagtgc
    10681 aatccctccc ccatataatt aaattctcat tttaactgct cactcttcct atcaaaaaga
    10741 gagcaaaact agcgcttaat taagctaaac aattatatat taggcaaaaa acattatcaa
    10801 tgagttagaa tgtgtctatt ttatgaacaa acaaattttc aaaccaatta aataatcttt
    10861 tactagaagt aatac
//
LOCUS       DABQVC010000096        10871 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.096,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000096 DABQVC010000000
VERSION     DABQVC010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10871
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.096"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..385
                     /locus_tag="IBJ56_001726"
     CDS             <1..385
                     /locus_tag="IBJ56_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HAM3417980.1"
                     /translation="YLLARVIQCFAPGIPQIYYVGLLAGKNDIDLLEETKEGRNINRH
                     YYTIDEIKNEVKRPVVKALCNLLRFRNTSEAFDLEGSIEIETPSSNEIVIIRKNKTNK
                     ITATLKANLSTKTFQISENERNILI"
     gene            451..696
                     /locus_tag="IBJ56_001727"
     CDS             451..696
                     /locus_tag="IBJ56_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417981.1"
                     /translation="MVIVLLYNAKRIETVFLCLLLSENAVGNQAFAIDFGKIEDIDVA
                     FKNTKRYKLFPSCTDTFKENYFLGSFSNMKSAFFLSK"
     gene            942..4496
                     /gene="rpoB"
                     /locus_tag="IBJ56_001728"
     CDS             942..4496
                     /gene="rpoB"
                     /locus_tag="IBJ56_001728"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HAM3417982.1"
                     /translation="MSGHSGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL
                     DEGLREMFRDISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI
                     NKETGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFNGKLDKNGKKG
                     FGSTVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDND
                     YLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY
                     KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQIIPNLENGVGFRTL
                     RPTDGVMEDSVLVQSIKIYAPNDEEKEINIIGNAYIEENVKHITPSDIISSISYFFNL
                     LHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDMTTITPQQLI
                     NIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRERAGYEVRDVH
                     YSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPETNRVTDKIDYLT
                     ADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSENLAVEKERIDYMDVSPKQVVSVAT
                     ACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAKDSGAAVTAKHDGI
                     VEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRPNVAEGDRVVKG
                     EILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFES
                     EARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELT
                     AEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYI
                     VQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQV
                     LELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNR
                     ISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG
                     AAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMDVKML
                     SADEEEIEMRDMDDDDFTNQNDAFNIVQPENAAAEKTE"
     gene            4667..8272
                     /gene="rpoC"
                     /locus_tag="IBJ56_001729"
     CDS             4667..8272
                     /gene="rpoC"
                     /locus_tag="IBJ56_001729"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HAM3417983.1"
                     /translation="MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPERD
                     GLFCERIFGPMKDWECSCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPVS
                     HIWYFKGIPSRMGLVMDMSPRALEEIIYFASYVVTEPGDTPLEKKQLLSEREYRVYRE
                     KYGKGFSAGMGAEAIKKILADIDLEKETNDLKEELKSAQGQRRTRAIRRLEVMEAFRN
                     SGNNPSWMVLDVLPVIPPEIRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGA
                     PNIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK
                     RVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVGRGLAHNIKSAKRKIER
                     MAPEIWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADF
                     DGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLEREN
                     AVGEGTIFKDINEAQLAYQNGYVHLHSRIAVFAGSIPNERFTDEQRNQLLITTVGKLI
                     FNTILPKSFPYINEPTKFNLEIETPAKYFVDTTTDVRAHIAAQELIDPFKKKILGNII
                     AEVFKKFHITETSKMLDRMKDLGFKISTKAGMTVGIADILTLEEKHEILEKAHDTVEK
                     ITKSFRRGLITDDERYERVIGVWNAAKDEIQGKLILSLDRLNPIFMMQDSGARGNISN
                     FTQLAGMRGLMADPSGRIVELPITSNFREGLTVLEYFISTHGARKGLTDTALKTADSG
                     YLTRRLVDVAQDVIIREDDCGTDRGLTIKAIREGTEIIEPLEERLEGRYSRKTIRHPE
                     TKEVIARENDLITEAIATQIVDAGIEEVTIRSAFTCNTKHGVCKKCYGKNLATGTEVE
                     VGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQAIIT
                     EVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYTARLRVEEGTIVERGEALTEGSVD
                     PKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI
                     LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKASLETDSFLSAASFQETTRVL
                     TDAAIKGKRDELLGLKENVILGKLVPAGTGIGRYRKLKSEVIKETAEVTDEITNI"
     gene            8348..8893
                     /locus_tag="IBJ56_001730"
     CDS             8348..8893
                     /locus_tag="IBJ56_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HAM3417984.1"
                     /translation="MITHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEK
                     VKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIF
                     DFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPLVAPPFV
                     IPVWDLADVPEALLLLKKISA"
     gene            8959..10419
                     /locus_tag="IBJ56_001731"
     CDS             8959..10419
                     /locus_tag="IBJ56_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HAM3417985.1"
                     /translation="MTEVKKQFPKGFLWGGATAANQVEGAYDVDGKGLSTADMVKFIP
                     KEERTQDHALDVSKAEIEAIIAGKVEGRFPKRDGVDFYHHYKEDIALFAEMGFKTFRL
                     SLNWARIFPNGDDKEPNEKGLEFYDKVFDELLKYDIEPLVTLSHYETPLNLTLKYNGW
                     ADRRVIGFFTNYAETVFKRYKNKVKYWLTFNEINVISLSAYTGGGVLLEDAKNPLELS
                     YQAGHHQFVASALATKLAHEIIPGSQVGCMLARMATYPATNNPDDILKAQYENQQNLF
                     FTDVHARGEYPSFMNRFFQENDIHIVKEVGDDEILKAHTVDFISFSYYMSLSATASPE
                     GDRSAGNLMGGVKNEYLESSDWGWQIDPKGLRWTLNDLYSRYELPLFIVENGLGAYDT
                     VEEDGKIHDDYRIDYLRKHIEQMKEAIADGVDLIGYTSWGPIDLVSASTSEMSKRYGF
                     IYVDQDDWGKGTLERSRKDSFFWYKKVIETNGEDLV"
     gene            10635..>10871
                     /locus_tag="IBJ56_001732"
     CDS             10635..>10871
                     /locus_tag="IBJ56_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3417986.1"
                     /translation="MKKTRVTWAIVIAIAGLLVSVISLSVNITQNRYNVRGVDSSSQW
                     KTGFQKNQTVCAIETKKHWTKGSVKYGVNQTSGTV"
BASE COUNT         3478 a         2082 c         2293 g         3018 t
ORIGIN      
        1 ttacttgtta gcgagagtaa ttcaatgttt tgcgccgggg attccgcaaa tttattatgt
       61 tggtttactt gctggcaaaa atgatattga ccttttagag gaaacaaaag aagggcgtaa
      121 tattaatcgt cattactaca caatagatga aattaaaaat gaagtaaaaa gaccagttgt
      181 taaagcgttg tgcaatttac tgaggtttag aaatacttct gaagcgtttg atttggaagg
      241 aagtatagaa attgagacac ctagctcaaa tgaaatcgtt attattcgca aaaacaaaac
      301 aaataaaatt acagcgacat taaaagcaaa tttaagtact aaaacattcc aaatcagcga
      361 aaatgaaaga aatattttaa tttaacattt tataaacacg aatgagcctc ttcgttcgtg
      421 tttatttcta ttttctattg acattggcta atggttattg tattattata taatgccaaa
      481 agaatcgaaa ctgttttttt gtgtttatta ttaagcgaaa atgctgtcgg aaatcaagca
      541 tttgcaatcg attttggcaa aatagaagac atagatgtgg ctttcaaaaa tacaaaacgg
      601 tataaacttt ttccgtcttg tactgacact tttaaggaaa attattttct agggagtttc
      661 agcaatatga aatccgcttt ctttttgtct aaatagaata ttttttgtac gaaagttcca
      721 cttatgttaa ctctggaaat gcttcttgga tgcgtgtttg caagccaaga ttagaaacaa
      781 aaaggaaaat tttgatgcac ggtgtttaag ccagtatatt ttgcacgtag caaaaaactg
      841 ctagcgtctt aaacctcgga tacggaaggt tccattgttt tcgcaaccat aattaacaag
      901 tgtgcttata aattttttaa ttaatttgag gggtgaatag tttgtcagga cattcaggac
      961 atgatgtaaa atatggacgg catcgtacgc gtagaagttt tgcgcgaatc agtgaagtac
     1021 ttgaattacc aaacttaatt gagattcaaa cagcttctta ccaatggttc ttagatgaag
     1081 ggctacgtga gatgttccgc gatatttcgc caattgagga ttttgcgggt aatttatctt
     1141 tagaattcat tgattacgat cttggagaac cgaaatactc ggtagaagaa tctaagaacc
     1201 gtgatgcaaa ctatgcggct ccactacgcg tgaagttgcg cctaatcaac aaagaaaccg
     1261 gcgaagtgaa agaccaagaa gtatttatgg gtgatttccc gctaatgact gaaatgggta
     1321 cgttcattat taatggggca gaacgtgtta tcgtttccca attagttcgt tctccaggtg
     1381 tttacttcaa tggaaaacta gacaaaaatg gtaaaaaagg ctttggttct actgtcatcc
     1441 ctaaccgtgg ggcttggctt gagtacgaaa cagatgctaa agacgttgta cacgttcgta
     1501 ttgaccgtac acgtaaatta ccagtaactg ttttacttcg tgcactaggc tttggttccg
     1561 atcaagaaat tattgattta atcggggaca atgactactt gcgcaacacg cttgaaaaag
     1621 acaacactga caatgctgaa aaagcacttc tagaaattta cgaaagatta cgtccgggtg
     1681 aacccccaac agttgataac gctagaagct tactagtttc tcgtttcttt gatccaaaac
     1741 gctacgatct tgcaagcgtt ggacgttata aaatcaacaa aaaattacat ctgaaaaacc
     1801 gtctattcaa ccaaacatta gcagaaactt tagtggatcc agaaactggt gaaattatcg
     1861 cttctaaagg tgacattttg gatcgtcgta atttagatca aattattcct aatttagaaa
     1921 acggtgtagg tttccgtaca cttcgtccaa ctgatggagt tatggaagat agcgtactcg
     1981 ttcaatctat taaaatctac gcaccaaatg atgaagaaaa agaaatcaac atcattggta
     2041 atgcgtatat tgaagaaaac gtaaaacaca tcacgccttc tgatattatt tcatccatta
     2101 gctacttctt taacttgcta catggtgttg gcgatacaga tgacatcgat cacctaggta
     2161 atcgtcgtct tcgttctgtt ggtgaacttt tacaaaacca attccgtatc ggtttatccc
     2221 gtatggaacg tgtagttcgt gagcgtatgt ctattcaaga tatgactaca attacaccgc
     2281 aacaattgat taatattcgc ccagtagttg cttctatcaa agaattcttt ggtagctcgc
     2341 agttatctca gttcatggat caaacaaatc cacttggcga acttacgcat aaacgtcgtc
     2401 tttcagcgct tggacctggt ggtttgacgc gtgaacgtgc tggttatgaa gtacgtgacg
     2461 tgcattactc tcactatggt cgtatgtgtc cgattgaaac gccagaggga ccaaacattg
     2521 gtttgatcaa ctccctttct tcctttgcga aggtaaataa attcggcttt atcgaaacgc
     2581 cttaccgccg cgtagatcct gaaacaaacc gtgttactga taagattgat tatctaactg
     2641 cggatgaaga ggataattac gtagtagcgc aagcgaactc gaaattagac gaacaaggta
     2701 ctttcacaga agaagaagtt atggctcgtt tccgttcaga aaacttagcg gtagaaaaag
     2761 aacgtattga ctacatggat gtatcgccta aacaggttgt atctgttgcg acagcatgta
     2821 ttccgttcct tgaaaacgat gatagtaacc gtgcgctaat gggagcgaac atgcaacgtc
     2881 aagcagttcc tcttatgcac cctgaagctc catttgttgg aacaggtatg gaacacgtat
     2941 ctgcaaaaga ctctggtgct gctgtaactg ccaaacatga cggtattgta gaacacgttg
     3001 aagctcgcga aatctgggtt cgtcgtgtat ctctagtgga tggcaaagaa gtaactggcg
     3061 gaattgataa atatacttta cgtaaatttg ttcgttctaa ccaaggtact tgttataacc
     3121 aacgtccaaa cgtagcggaa ggtgaccgcg ttgttaaagg ggaaatcctt ggtaacggtc
     3181 catcgatgga ttccggtgaa cttgctcttg gtcgtaatgt actagttgcg ttcatgactt
     3241 gggatggtta taactacgag gatgcgatca tcatgagtga acgtcttgta aaagatgacg
     3301 tttatacttc gattcatatt gaagaattcg aatcagaagc tcgtgataca aaactcggac
     3361 ctgaagaaat gactcgtgat attccaaacg ttggggaaga tgctttacgc gaccttgacg
     3421 aacgtggaat tatccgtgtt ggtgctgaag taaaagacaa cgaccttcta gttggtaaag
     3481 taacaccaaa aggagttacc gaattaactg cagaagaacg tttattacac gctatctttg
     3541 gtgaaaaagc acgtgaagtt cgcgatactt cattacgtgt acctcatggc ggcggaggaa
     3601 tcgtgcttga cgtgaagatc tttacacgtg aagcaggcga cgaactacca cctggtgtaa
     3661 accaattagt acgtgtttat attgtacaaa aacgtaaaat ccacgaaggc gataaaatgg
     3721 ccggacgtca cggtaacaaa ggggttatct cccgtatttt acctgaagaa gatatgccat
     3781 ttatgccaga cggaacacct gttgatatca tgcttaaccc actaggggta ccatctcgta
     3841 tgaatatcgg acaagtacta gagctacact taggtatggc tgctcgtgct ttaggaattc
     3901 acgttgcaac accagtattt gatggtgcga atgaagaaga cgtttggagc acagtggaag
     3961 aagctggtat ggcccgcgat gcgaaaacaa ttctttatga cggacgttct ggtgaagcat
     4021 ttgataaccg tatctctgta ggtgtaatgt acatgatcaa acttgcccac atggttgatg
     4081 ataaacttca tgcgcgttca actggacctt actctctagt aacgcaacaa ccgcttggtg
     4141 gtaaagcaca atttggtgga caacgttttg gtgagatgga agtatgggca ctggaagctt
     4201 atggtgctgc ttatacactt caagaaatcc taacgattaa atccgatgac gtggttggtc
     4261 gtgtgaaaac ttacgaagcg attgttaaag gcgaaagcgt tccagaacct ggtgtgccag
     4321 aatccttcaa agtactcatc aaagagcttc aaagtcttgg aatggatgtt aaaatgcttt
     4381 ccgcagacga agaagaaatc gagatgcgtg acatggatga tgacgacttt actaatcaaa
     4441 atgatgcctt caatatcgta caaccggaaa atgcagccgc tgaaaagact gagtaattcg
     4501 gttcgataat tgagactcca aaacaataag aaacaatgat ttgttttttg caaaatataa
     4561 aattaagcga tcgctaagac tttacctgaa aagtctggga agtgtgcggg aatccccaag
     4621 cgcttcctaa agcgaatgct ccaaactaat ttaggaggtt gggcacttgt tagatgttaa
     4681 taattttgag tatatgaaaa tcggtctggc atctccagat aaaattcgtt catggtctca
     4741 tggtgaagta aaaaaacctg aaaccatcaa ctacagaacg cttaaacctg aacgtgatgg
     4801 cttattctgt gaaagaattt ttggaccaat gaaagactgg gaatgttctt gtggtaaata
     4861 caaacgtgtt cgctataaag gcgtagtttg tgaccgttgt ggagtagaag taacgaaatc
     4921 aaaagtccgt cgtgaacgta tgggccatat tgaactcgca gctcctgttt ctcacatctg
     4981 gtacttcaaa ggaattccaa gccgtatggg tcttgttatg gatatgtccc cacgtgcatt
     5041 agaagaaatt atctactttg catcttacgt ggttacagaa ccaggcgata ctccacttga
     5101 aaagaaacaa cttttatctg aacgtgaata ccgcgtttac cgcgaaaaat atggtaaagg
     5161 tttctcagct ggtatgggcg cagaagcaat caaaaaaatc ttagccgata tcgacttaga
     5221 aaaagaaaca aatgatttaa aagaagaact aaaatctgca caaggtcaac gtcgtactcg
     5281 tgcaattcgt cgtttggaag ttatggaagc tttccgtaat tccggcaaca acccaagctg
     5341 gatggtactt gacgtgctac cagttatccc accagaaatt cgtccaatgg tacaacttga
     5401 aggtggccgt tttgcaacaa gtgatttgaa tgacttatat cgtcgggtaa tcaaccggaa
     5461 caaccgtttg aaacgcctac ttgatctagg tgcaccaaac attatcgtgc aaaatgaaaa
     5521 acggatgcta caagaagctg tcgatgctct aattgacaac ggtcgtcgtg gtcgtccagt
     5581 aacaggtcca ggtaaccgtc cgcttaaatc cctttctcat atgcttaaag ggaaacaagg
     5641 tcgtttccgt caaaacttac taggtaaacg tgtcgattat tctggtcgtt ccgttatcgt
     5701 cgttggacct aacttaaaaa tgtaccaatg tggtcttcca aaagaaatgg cacttgaatt
     5761 attcaaacca tttgttatga aagaattagt tggacgcggt ttagcacata acattaagag
     5821 cgctaaacgt aaaatcgaac gtatggctcc agaaatctgg gacgtattag aagaagttat
     5881 ccgtgaacat ccggtattac ttaaccgggc gcctacgctt cacagacttg gtatccaagc
     5941 atttgaacca actctagttg aaggtcgcgc aatccgtctt caccctcttg tatgtacagc
     6001 ttacaacgct gactttgatg gtgaccaaat ggcggttcac gttcctttat ccgcagaagc
     6061 acaagcagaa gcacgtattt taatgcttgc agcgcaaaac attttgaacc ctaaagatgg
     6121 taaaccagtt gtaacacctt cccaagatat ggtgctaggt aactactacc ttactttaga
     6181 acgtgaaaat gctgtcggcg aaggtactat cttcaaagat attaatgaag cgcaacttgc
     6241 gtatcaaaac ggctatgtac acttacattc acgtattgct gtatttgctg gctcgattcc
     6301 aaatgaacgt ttcactgatg aacaacgcaa ccaattatta attacgactg ttggtaaatt
     6361 gattttcaac acaatcttac caaaatcgtt cccttatatt aatgaaccaa cgaaattcaa
     6421 cttagaaatc gaaacaccag ctaaatattt cgttgatact acaacagatg tgcgtgctca
     6481 cattgctgca caagaactaa tcgatccatt caagaagaaa atcctcggta acattatcgc
     6541 ggaagtcttc aagaaattcc atattaccga aacttcaaaa atgcttgacc gtatgaaaga
     6601 tcttggtttc aaaatctcga ctaaggccgg tatgacagta ggtattgcgg atatcttaac
     6661 acttgaagaa aaacatgaaa ttcttgaaaa agcacatgat acagttgaaa aaatcactaa
     6721 atcattccgt cgtggtctga ttacagatga tgaaagatac gaacgcgtta tcggcgtatg
     6781 gaatgctgcc aaagacgaaa tccaaggaaa actgatcttg agtttggacc gcttaaaccc
     6841 aatcttcatg atgcaagatt ccggagctcg tggtaacatt tccaacttta cacagctagc
     6901 tggtatgcgt ggactgatgg ctgacccatc cggacgtatc gtagaattgc cgattacatc
     6961 taacttccgt gaaggtttaa cggtcttaga gtacttcatt tctacccatg gtgcgcgtaa
     7021 aggtcttacc gatacagccc ttaaaacagc cgattccggt taccttactc gtcgtcttgt
     7081 tgacgtggct caagatgtta tcattcgtga agacgattgt ggcactgacc gcggtcttac
     7141 aattaaggct attcgtgaag gtactgaaat catcgaacca cttgaagaac gtctggaagg
     7201 tcgttattct cgtaaaacaa ttcgtcaccc agaaacaaaa gaagttattg cacgtgaaaa
     7261 tgacttaatt acagaagcaa ttgccactca aatcgttgac gctggtattg aagaagtaac
     7321 tatccgttct gcattcacat gtaatacaaa acacggcgta tgtaaaaaat gttatggtaa
     7381 aaacttggca actggtacag aagtcgaagt tggagaagca gttggtatca tcgctgctca
     7441 atctatcggg gaaccaggaa ctcagcttac tatgcgtact ttccatacag gtggggttgc
     7501 cggagacgat atcacgcaag gtcttccacg tattcaagaa atttttgaag cacgtaatcc
     7561 gaaagggcaa gctatcatca ctgaagttgg cggtgaagtt gtttctatcg aagaaggtcg
     7621 tgatcgtcaa caagaaatca ctatccaagg tacagatgac cgccgttctt acaacattcc
     7681 ttacactgct cgcctgcgtg tagaagaagg aactatcgta gaacgtgggg aagctctaac
     7741 tgaaggttct gtggatccta aagccttgat tcgtgttcgt gacgtattat ccgttcaaga
     7801 atatctactt gcagaagtac aaaaagttta ccgtatgcaa ggggtagaaa ttggcgataa
     7861 acacgttgaa gtaatggttc gtcaaatgtt acgtaaaatc cgcgtaatgg atactggtga
     7921 tacaaacatc ttaccaggta cattaatgga tattcatacg tttacagaag ccaaccgcga
     7981 cgctatctta agtggtagcc aaccagcaac aggtcgtcca gttcttctag ggatcacaaa
     8041 agcttccctt gaaactgact ccttcttgtc tgctgcatca ttccaagaaa caactcgtgt
     8101 cttgacagat gctgcaatca aaggaaaacg tgacgagctt ctaggactta aagaaaatgt
     8161 tatcctaggt aaacttgttc cagctggtac aggtattggt cgttaccgca aactgaaatc
     8221 cgaagttatc aaggaaacag ctgaagtaac tgacgaaatc acaaatattt aatcttacaa
     8281 agccaagtgt gccgttcgcg tacacttggc tttttttgtt atactctaga aaaaggagtg
     8341 aagtgatttg attacacatg ttatttggga tatgggcgaa acattaaaca ccgtaccaaa
     8401 cacaagatac gaccatcacc ctctcgatac ttatccagaa gtagtgctac ggaaaaatgc
     8461 caaagaaacg cttgaaaaag taaaacaact cggattcaaa caagcaatcc tcagcaatac
     8521 cgcaacaagt gacacagaag taattaagcg cgtattaact aattttggta tcatcgatta
     8581 ttttgacttc atttacgcct ccaattccga attacaacca gggaaaatgg aaaagccaga
     8641 caaaactatt tttgatttca cactaaatgc ccttcaaatt gataaaacgg aagcagtcat
     8701 ggtcggaaat acattcgaaa gtgatattat tggtgcaaat cgtgcaggaa tccatgcgat
     8761 ttggctgcaa aacccagaag tttgtttgca agatgagcgc ctacctcttg tcgcgccgcc
     8821 atttgttatc ccagtttggg acttagctga tgttcccgaa gcccttttac tattaaagaa
     8881 aatttctgct tgacctgtaa tgcattacac agagtaaact aaaaaagtag aagaaattag
     8941 ccggaagggg cgaacgaaat gactgaagtg aaaaaacaat ttccaaaagg atttttatgg
     9001 ggtggagcaa ctgctgcgaa ccaagttgaa ggcgcttacg atgtagatgg taaaggcctt
     9061 tccacagcag atatggtcaa attcattcca aaagaagaac gcacacaaga tcatgcatta
     9121 gatgtatcta aagcagaaat cgaagcaatt attgcaggga aagtagaagg tagattccct
     9181 aaacgtgatg gcgttgattt ttatcatcac tataaagaag acatcgcatt atttgccgaa
     9241 atgggcttta aaacattccg actatcacta aactgggcgc gtatttttcc gaatggtgat
     9301 gacaaagagc cgaatgaaaa aggccttgaa ttttatgata aagtgtttga tgaattatta
     9361 aaatatgaca ttgagccact tgtgacactt tctcactatg aaacaccact aaatcttact
     9421 ttaaaatata acggctgggc tgatcgtcgc gttatcggat ttttcacgaa ctatgcggaa
     9481 acagttttca aacgttataa aaacaaagta aaatattggc taacttttaa cgaaatcaat
     9541 gttatttcac ttagcgcata cactggtggt ggcgtgcttt tagaagacgc gaagaatcca
     9601 cttgaacttt cttatcaagc aggacatcac caattcgtag ccagtgctct tgcaacaaaa
     9661 ttggcgcatg aaattattcc tggatcacaa gttgggtgta tgttagcgcg catggcgact
     9721 tatcctgcga ctaacaaccc agatgatatc ctaaaagcac aatacgaaaa ccaacaaaat
     9781 ctatttttca cagacgttca tgctcgcggt gaatatccaa gcttcatgaa tcgtttcttc
     9841 caagagaacg acattcacat cgtaaaagaa gttggcgacg acgaaatctt gaaagcacat
     9901 acagttgatt tcatttcatt cagctattac atgtccctat ccgcaacagc tagcccagaa
     9961 ggcgaccgct ctgccgggaa cttaatgggt ggcgtgaaaa atgaatactt ggagtcgtcc
    10021 gattggggtt ggcaaattga ccctaaaggc ttacgctgga cactaaatga tctttatagc
    10081 cgctacgaat taccactttt catcgtggaa aatggcttag gtgcttatga tacagtggaa
    10141 gaagacggca aaatccatga cgattaccga attgattact tgcgcaaaca catcgaacaa
    10201 atgaaagaag caattgcaga cggcgtagat ttaattggtt acacaagctg gggacctatc
    10261 gacctagtaa gtgcctccac aagcgaaatg tccaaacgtt acggcttcat ctacgtagac
    10321 caagatgact ggggcaaagg aacattagaa cgctcccgca aagattcatt cttctggtat
    10381 aaaaaagtaa ttgagacaaa tggtgaagat ttagtttaat agaaagttag cagtcccgct
    10441 ttggcggggc tgttttttat gaatgtaaaa gcgaagtatt tatcttttag catgaattaa
    10501 attaaaaaat attaataatt agatagaaaa ttctaaaaca attaggtcta atttctcttt
    10561 tgtgttgttt ttcacaaatc attgtgatac aattttttgg atgaatggag agcgaactag
    10621 agggaggaaa caacatgaaa aaaacacgtg tcacatgggc aatagttatt gctatagcag
    10681 gcttattagt ttctgtgatc agtttatcag taaacatcac ccagaataga tataatgttc
    10741 gaggagtgga ttctagttcc cagtggaaaa ctggatttca aaaaaatcaa actgtttgtg
    10801 caatagaaac aaagaagcat tggacaaagg gcagtgtgaa gtatggtgtg aaccaaactt
    10861 ctggaactgt t
//
LOCUS       DABQVC010000097        10819 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.097,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000097 DABQVC010000000
VERSION     DABQVC010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10819
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.097"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(6..374)
                     /locus_tag="IBJ56_001733"
     CDS             complement(6..374)
                     /locus_tag="IBJ56_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3417987.1"
                     /translation="MSEKEIRRSMPLFPIGPVMKLTDLTARQIRYYEDQGLIHPARNQ
                     GNHRLYSLQDIDVLLEIKDYLNDGLNIAGIKKMYQMQQKESKEPLTDDDVRKILRKEM
                     QQAGRFVKQDATGKQQLPRF"
     gene            complement(576..1802)
                     /locus_tag="IBJ56_001734"
     CDS             complement(576..1802)
                     /locus_tag="IBJ56_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine gamma-lyase family protein"
                     /protein_id="HAM3417988.1"
                     /translation="MNNIQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSD
                     FHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDE
                     LLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTK
                     MIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGAD
                     IIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF
                     FLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQAI
                     QAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELTADGPIREPYQLYVQGGLT
                     YEHIKIAVTRAIQKIV"
     gene            complement(1795..3018)
                     /gene="hflX"
                     /locus_tag="IBJ56_001735"
     CDS             complement(1795..3018)
                     /gene="hflX"
                     /locus_tag="IBJ56_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HAM3417989.1"
                     /translation="MEREKIILVGVILPNKTEEAFWNSMNELHSLAKTANGEVVDELI
                     QKLERVNQASFIGSGKLEELATLVEMHEADVVIFNSELSATQVRNISKAVDARIIDRT
                     QLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGGGIGSRGPGESKLEM
                     DKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNE
                     TTLQEDKLFATLDPTTRKIRFSGGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVD
                     VLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMDHAPATFVPDQPENLLI
                     SALDQEAPDTIKQRMIQLIEKNWAFFTLELSEEKGKELAQIKQQAWVTKLEYIESKQS
                     YHIEGYKPRKELNNE"
     gene            complement(3129..3362)
                     /gene="hfq"
                     /locus_tag="IBJ56_001736"
     CDS             complement(3129..3362)
                     /gene="hfq"
                     /locus_tag="IBJ56_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HAM3417990.1"
                     /translation="MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFT
                     VLLDVEGKQQLVFKHAISTFSPQKNVALNPDAE"
     gene            complement(3484..4401)
                     /gene="miaA"
                     /locus_tag="IBJ56_001737"
     CDS             complement(3484..4401)
                     /gene="miaA"
                     /locus_tag="IBJ56_001737"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HAM3417991.1"
                     /translation="MSKIPVIVIVGPTAVGKTSLSIELAKKLDGEIISGDSMQVYRGL
                     DIGTAKITPEEMDGIKHYLIDVTNPSEPFTAAKFQIETRKCIETIHQAGRLPIIVGGT
                     GLYIQSVFYDYDFGNVSEDKAYRAELEQLDKTVLWQMLEQKDPESAAQIHENNKRRVI
                     RALEVMHLTGKPFSEYQVNNVLNDRYQPLFLGLDLDRALLYERINQRVNLMFEEGLVT
                     EAKKLYEQHLVDVPAVRGIGYKELFPYFEGKSSLEEAKELIQKNSRHFAKRQLTWFRN
                     RMDIDWIQAGVSSTESEALNKATTFLTAK"
     gene            complement(4528..6204)
                     /locus_tag="IBJ56_001738"
     CDS             complement(4528..6204)
                     /locus_tag="IBJ56_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HAM3417992.1"
                     /translation="MVQLFSAFDRETIERNLQEEKFDLVIVGGGITGAGIALDATSRG
                     MSVALVEMGDFASGTSSRSTKLVHGGLRYLQQFEIKEVADLGKERAIVYENGPHVTTP
                     EWMMLPFHKGGNMGKTTASFGIRLYDYLAGVKKNERRKILSAKETLAKNPFVKKDGLK
                     GSGYYVEYRTDDARLTIEVMKKAVELGANAINYTKAEHFLYDDNKQVVGVTVTDRLSG
                     KAYDIKGHRVINAAGPWVDKVRKLDYATNNKHLRLTKGIHLVIDKQKFPMEQAVYFDT
                     PDGRMVFAIPRDKKVYVGTTDTVYDEAVINPKALESDHNYVIKAINYMFPDVHITEKD
                     IESSWAGVRPLIYEEGKDPSEISRKDEVWFSESGLITMAGGKLTGYRKMAEKLLDDVS
                     KTLAKETGKKYKTVQTKHLPISGGDIGGSEQLEAFLSKKAKEGNNRFGWTLEEGREMA
                     KRFGSNIDQLFTYAQEHKEQNETTLPNSLYAELRYSIQHEAVTTPIDFLLRRTGYLLF
                     DMPYLLEWKDAVVDEMAKQFHWSDDVKQTYIEELNIQINDAREPADWHDR"
     gene            complement(6437..7135)
                     /locus_tag="IBJ56_001739"
     CDS             complement(6437..7135)
                     /locus_tag="IBJ56_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HAM3417993.1"
                     /translation="MTEIFAHRGSSGTHPENTLPAMKAAILSGADGIELDIHVLKSGE
                     LIVMHDERVDRTTNGSGFLKDYTLSEVKKLVIGKRLFRKIRVPTLEEIFKLVSGTDMI
                     LNIELKTDVFEYEGIEQKVLALADKFPEVKRMYSSFNPDTLIRLRDLDPTARLALITH
                     ENLDEVLPLHEKIQLDAVHPPVKAMKNPILKQIAARYWTVNKEETITHFIDANVKGMM
                     TDFPEKAVALRNNK"
     gene            7348..9234
                     /locus_tag="IBJ56_001740"
     CDS             7348..9234
                     /locus_tag="IBJ56_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HAM3417994.1"
                     /translation="MKRTTRYSRKYVPSIDGLRALAVIAVIAYHLNFSWAKGGFIGVD
                     IFFVLSGYLITNILLTQWEKNQSLQLKQFWIRRFRRLIPAVYVMIVVVVIYAVFFHPE
                     ILKNLRGDAIASFFYVSNWWFIFHNVSYFDSFGLPSPLKNLWSLAIEEQFYLIWPAFL
                     LVFLKWVKNPKLLLKIVIGLGLLSAVWMTILYVPGTDPSRVYYGTDTRAFDLLAGCAL
                     AFVWPFNRLSPVVPRKSKSVLNIAGTISILCFILFTAFVSEYQPFLYRGGLLFVAILG
                     VIMIATISHPASYLSKIFSFKPLRWIGTRSYGIYLWHYPIITLTTPVLEITQPNIWRA
                     ILQVAATFIIAELSFRFIETPIRKNGFINYFKGFKDKNYFIWKNKPVGKWLSIAGVVA
                     VLAIFTLGMSNVLSVNTNAEKQQTSVKTTTSTPDEKKDDKKDKEDKATKEKEDSKETD
                     ANKANGQNQTQVPDNKNKTAATPKTMITQTVAIGDSVMLDIEPYLKEAVPNITIDGLV
                     GRQLRDAITTATGYKKFNSENSSVILELGTNGPFTEEQLNDLLDQFDKATIYLVNTRV
                     PRGWQSDVNKSIANASSRPNVTVVDWYSRSSGQSQYFAPDGVHLTKSGAQAYVAMLTS
                     VMNK"
     gene            complement(9267..>10819)
                     /gene="inlK"
                     /locus_tag="IBJ56_001741"
     CDS             complement(9267..>10819)
                     /gene="inlK"
                     /locus_tag="IBJ56_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class 1 internalin InlK"
                     /protein_id="HAM3417995.1"
                     /translation="EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP
                     NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL
                     NIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKKLINSDIKGSALTYNAEKQTLYVPFS
                     LMTERTVNYDGYVPDFVKSTAGSDTYFAMNEKQVNGNRLTITSDGLTVSDVSKADFDN
                     LEKMEYNAKIDLSSQTYNIPDQFKNGGAYNISVPIYDHYFTVDHSVNISADSGKTYIE
                     NQPVTEAEFLADIHAKTDDGSTVTSDFADKVDFKTPGTYTVTLQSENNSGLKAAPVQV
                     NVTIKEKTAITADEKITYKVDTSKTEAEFLADIKAKTNDGTAITSDFATVVDLSKPGK
                     YVVTLNAENDLQKALPVQVTVIVEKETPIPDPTPNPTPDPTPNPTPTPDPTPDPSPTP
                     NPVIKPNVNKPEVPSHKIPSLTVNEKKAKAETSKEALPKTGDSLPVAGATVGFLLISL
                     SWFVSRKK"
BASE COUNT         3026 a         2172 c         1809 g         3812 t
ORIGIN      
        1 tctttttaaa accttggtaa ttgttgtttc cctgtcgcat cttgctttac aaagcgacca
       61 gcttgttgca tttcttttct aagtattttg cgcacatcat cgtctgtcaa aggttcttta
      121 gattcttttt gctgcatttg atacattttc ttaattcccg caatattcag accatcattc
      181 aaataatctt ttatctctag caaaacatca atgtcttgaa gtgaatacaa acggtgattt
      241 ccttgatttc gtgccggatg gattaatcct tggtcttcat agtagcgaat ttgtctagcg
      301 gtgagatcag ttagcttcat cacaggccca attggaaaca gcggcatcga tctccggatt
      361 tccttttcac tcacgacaat tccccctcaa aacataatta ttttttgatg atagtagcat
      421 tataatgtac gtcagatgtt ttgtcaaatt tatgtaagat attctaacat tatcgttaaa
      481 gcgttgtata ccaatgtatt ccgcataaaa aaaccgcgat taaaaccatc gcggtaaaaa
      541 ttaaaaatat ttttttgcaa ataaatgtta cttttttata ctattttttg gattgctcga
      601 gtaactgcaa ttttgatgtg ttcataggtc aaaccgcctt gaacatagag ttgataaggt
      661 tctctaatag gtccatctgc tgttagttcc aaactcgcgc cttgtataaa tgtcccagct
      721 gccattatca cgtcatcttc ataacctggc atatatgcac cgattggcaa aacatgcgca
      781 ttaaccggcg aggctgcttg aatagcttgc gcaaatgcaa ccatcttctc tttgttatgg
      841 aaggaaacgc tttgaattaa atcagttctt ggcgcatccc aaactgggtc agcttctaca
      901 ccaaactccg caagcatggc ggctgtgaat cgtgctcctt taattgcctg agctgtcaca
      961 tgaggagcta aaaagaaacc ttgatacatt tctaataaac tatagagtga tgcacctgct
     1021 tctctgccaa ttccaggtgt agttaagcga taaccacata aatctactaa tgcttctttt
     1081 cctgcaatat aaccgcctgt tttcgctaag ccaccaccag gatttttgat taatgaaccc
     1141 gcgataatat ctgctccaac ttctggcggc tcctgatatt ccacgaattc tccgtaacag
     1201 ttatctacaa aaacaattac ttccggattg atatttttta caaatacaat catttcttta
     1261 atcttttcta ttgtaaaaga aggtctatcc gcataacctc gtgaacgctg aattccaatc
     1321 atctttgttt ttggcgtcat ttttttcgct attcttggaa agtctacatc accattttcc
     1381 agaagcggca cagagctata accaatatga aaatctttta aagagccctg tccttgcttt
     1441 cgtattccta caatttcttc taacgtatca tagggttgac cagtaatata aagtaattca
     1501 tcatccgggc gaaggatgcc aaataatacg gttgaaattg catgggttcc tgaaattatt
     1561 tgtggacgaa ccagggccgc ctctgtctta aatacagtcg catacacacg ttctaatgta
     1621 tctctacctt catcatcata accataccca gtggaaggat gaaaatgaaa atcactcact
     1681 ttattctctt gaaacgcatc taaaactttc gcttgattaa attcagcaat ttcgtctgtt
     1741 ttattttgca aatcatcaat ttgtgtttcc accttttttc gtatcgcttg aatattattc
     1801 attatttagc tcctttctcg gtttgtaccc ctctatgtgg taactctgtt tactttcaat
     1861 atattctagt ttcgttaccc acgcttgttg ctttatttgc gctaattctt ttcctttttc
     1921 ttctgaaagt tctagtgtaa agaaagccca atttttttca attaattgga tcattcgctg
     1981 tttaatcgta tctggagcct cttgatctaa agctgatata agcaaatttt ctggttgatc
     2041 gggtacaaac gtggctggtg catgatccat tttattgtaa atgactagtg tcggcagatg
     2101 gttcatttca agttcctcta ataaagaaat taccgttgtt tcgtgttgca aatagtctgg
     2161 atttgatgca tcaactacat gaattaacac atctacattg gcagtttcct ctaaagtaga
     2221 gcgaaaagct gcaattaaag tcgttggcaa atcttgaata aaaccaactg tatctgtcaa
     2281 aagcgcttga aatccacccg aaaagcgaat ttttcgtgtg gttgggtcaa gcgttgcaaa
     2341 taatttatct tcttgtaatg ttgtttcatt cgttagacgg ttgaaaatag ttgatttccc
     2401 tgcatttgtg taaccaatta aaccaaagcg aaaaacggat tgtatatttc ttcgttcaat
     2461 gattcgcttg cggtgttgtt caacatgtgt taattgcgct ttgatatcat gcattttttc
     2521 gcgaatatgg cgtttgtcca tttctagttt ggattcacca ggccctcttg aaccaatacc
     2581 tcctccaagt tttgataagg aaacaccttg tccgctaagt cttggtaaca gatatttata
     2641 ttgcgcgtat gcgacttgca gttttccttc tttggatttt gcgcgcatgg caaatatgtc
     2701 taagattaac tgtgttcggt caattattcg cgcatcaacc gccttagaaa tattgcgcac
     2761 ttgagttgca ctaagttcac tattaaatat aacaacgtcc gcctcatgca tttccactaa
     2821 agtagcaagc tcttccagtt taccagaacc aatgaacgat gcttgattta ctcgttctaa
     2881 tttttgaatt aattcatcta ctacttcacc atttgccgtt ttagctaagc tatgtagttc
     2941 attcatggaa ttccagaaag cttcttctgt tttatttggc aaaatcacgc ctacaagtat
     3001 tattttttct ctttccacat gcatttctcc ctttttcaga caagactaat cgtagcatat
     3061 tttctgcata aaaaaaagac atgaaacatc gcaaaaaaag cgagttccct gcctttcaag
     3121 taaagtactt attccgcatc aggatttaaa gcgacattct tctgcgggga gaaagttgaa
     3181 attgcgtgtt taaatacaag ctgttgtttt ccttcgacat ctagtagtac ggtaaaattg
     3241 tcaaaactta caacacgtcc tcttaactga aaaccatttg ttaaaaatac agttgcaaga
     3301 attttttcct tacgcaattg atttaagtaa tagtcctgta acccttgtcc accttgtttc
     3361 ataatttccc tctccaatct ctatcttata ctaaaaattt cccaaacccc aatgaagttc
     3421 cattgtgcaa ttggttggct aatttcaaat accctttatt tcttcttacc aaacagaaaa
     3481 gcgttattta gctgttaaaa aggttgttgc tttatttaat gcttctgatt ctgtactgct
     3541 aacacccgcc tgaatccagt caatatccat tctatttcta aaccaggtta actgtctttt
     3601 cgcgaaatgc cttgagttct tttgaattaa ttcttttgct tcttctagtg agctctttcc
     3661 ttcaaaataa ggaaataatt ctttgtagcc gatgccgcga actgctggaa catccactaa
     3721 atgttgctca tataattttt ttgcttctgt cactaaacct tcttcaaaca ttaaattcac
     3781 tcgctgatta attctttcgt aaagtaacgc tctgtccaaa tcaagtccta gaaagagtgg
     3841 ttggtatcta tcattaagta cattattcac ttgatactct gagaaaggct ttcctgttag
     3901 atgcatcact tctaatgctc taatcactcg gcgcttattg ttttcgtgta tctgtgctgc
     3961 gctttctgga tctttttgtt cgagcatttg ccacaataca gttttgtcta gttgttctaa
     4021 ttccgctcga taagccttat cttcgcttac gttaccaaaa tcataatcat agaaaacaga
     4081 ttgaatataa agtcctgttc caccaacaat aattggtagc ctaccagctt gatgtattgt
     4141 ttctatacat tttcttgttt ctatttggaa tttcgctgca gtgaatggtt cggaaggatt
     4201 cgtcacatca ataagataat gtttgattcc atccatttct tctggtgtga tttttgctgt
     4261 accgatatct aatccacgat aaacttgcat agagtcacca ctgatgattt ctccgtccaa
     4321 ttttttcgct agttcaatac ttaaacttgt ctttccgaca gcggttgggc caacgatgac
     4381 gatgacagga atcttgctca aaaaaaaacc tccttttcac ctgtaatcaa tgtaccatga
     4441 aaaaggtttc ttgaaaatag tgaaaatgat tttttccaga aaaaaagcgc aaatccttga
     4501 aagatttacg ctcttttcga attttaatta tctatcgtgc caatcagctg gttctctagc
     4561 atcattaatt tgaatattta attcctcgat ataggtttgt tttacatcgt cgctccagtg
     4621 gaattgttta gccatttcat ccacaacagc gtctttccat tcaagtaagt atggcatatc
     4681 gaaaagcaag tagccagtgc gacgtaataa gaaatcgatt ggcgttgtca ctgcttcgtg
     4741 ttgaatcgag tagcgtagtt cagcatacaa actgtttggt aaagtggttt cgttttgttc
     4801 tttatgttcc tgtgcataag taaataattg atcgatatta ctaccgaaac gtttagccat
     4861 ctcacgacct tcttctaaag tccagccgaa acgattatta ccttctttcg cttttttaga
     4921 taggaaagct tctaattgtt ctgagccacc aatgtcacca ccagaaattg gtaaatgttt
     4981 tgtttgaact gttttgtact ttttaccagt ttctttcgct aatgtttttg aaacgtcatc
     5041 taataatttt tcggccattt ttctgtaacc agtgagttta ccacctgcca tcgtgattaa
     5101 gccactttca gaaaaccaaa cttcatcttt acgtgaaatt tcagatggat cttttccttc
     5161 ttcatagata agtggacgaa ccccagccca acttgattca atatcttttt cggtaatatg
     5221 cacatcaggg aacatataat taatcgcctt aatcacataa ttatgatcag attcaagtgc
     5281 ttttggatta attactgctt cgtcgtacac tgtatccgtc gttccaacat acactttttt
     5341 atcgcgcgga atagcaaaga ccatccggcc atcaggtgta tcaaagtata ccgcttgttc
     5401 catcgggaat ttttgtttat caataaccaa atgaattcct tttgttaagc gtaaatgttt
     5461 gttgtttgtt gcataatcta attttcttac tttatctacc caaggaccag cagcattaat
     5521 aacacgatgt cctttaatat cgtatgcttt gcccgacaaa cgatctgtta cggttacacc
     5581 aactacttgt ttattgtcat catataagaa atgctccgct tttgtatagt taatagcatt
     5641 cgctccgagt tctactgctt ttttcataac ttctattgtt agacgcgcat catccgtgcg
     5701 gtattccacg tagtaaccag aaccttttaa accgtctttt ttcacgaatg gatttttggc
     5761 taatgtttct tttgcgctta aaattttacg tcgttcattt ttctttaccc ctgctaaata
     5821 gtcatataaa cgaataccaa atgaagcggt agttttaccc atattgccgc ctttatggaa
     5881 tgggagcatc atccattcag gagtcgttac gtgtggtcca ttttcgtaga ctatcgcacg
     5941 ttcttttcct aaatctgcta cttctttaat ttcaaattgt tgtaaatatc ttaatccacc
     6001 gtggactaat tttgttgaac ggctcgatgt tccgctcgcg aaatcaccca tttcaacaag
     6061 tgcgacactc atacctcgtg aagtggcatc taaagcgatt cctgcccctg taatcccgcc
     6121 accgacgatg actaaatcaa atttttcctc ttgaagattt ctttcgattg tttctctgtc
     6181 aaacgctgaa aataattgta ccattttgtt tgcccccttc aaattgttta ccgtctgaat
     6241 tatgccttct tggttacttt tccacttttc aatctaactg aaacgcttta agtttaaaaa
     6301 caaaaaaaga gactgcaaag taagacgatt gcgctcgcct tttgcagtct ctccgaatct
     6361 cagacaataa tatttattaa cttactatga ttatatcttt taacgattta taatgaaagc
     6421 gttttgctca tggaggttat ttattatttc ttagtgccac tgccttttca ggaaaatcag
     6481 tcatcattcc tttaacattg gcatctataa aatgcgtgat agtttcctcc ttattcaccg
     6541 tccaatagcg tgctgcgatt tgctttaaaa tcgggttttt cattgctttt actggtggat
     6601 gcactgcatc aagctgaatt ttttcatgta atggcaatac ttcatctaag ttttcatgtg
     6661 taattaaagc tagtctggca gtaggatcta aatctctcag ccgaatgaga gtatctgggt
     6721 taaaggaaga atacattcgt ttgacttcgg gaaatttatc cgctaatgct aaaacttttt
     6781 gttcgattcc ttcatattca aagacatccg ttttcaactc aatgtttagt atcatatctg
     6841 tgccactcac caacttaaaa atttcttcca aagttggcac acggatttta cggaaaagcc
     6901 gtttaccaat cactaatttt ttcacttctg aaagtgtgta atcttttaaa aagccagacc
     6961 catttgtagt cctatcgacg cgttcatcgt gcatgacgat taattcgcca cttttcaaaa
     7021 catgaatgtc taactcgata ccatccgcac cggataaaat cgctgctttc atagctggta
     7081 gtgtattttc tggatgcgtc ccactactgc ctcgatgggc aaaaatttcc gtcaaaatgc
     7141 ttccccccaa actatttact tatatttact ataacaaaaa taagcaaata tactcaaatt
     7201 tttaaaatct atcaattaat tcagcatttt aaattacttc ttgatttatg tgtggtatta
     7261 tagtatggag ctaaaaacag atctctttac tatctctgtc taggtttaca cacacatatt
     7321 tacttatcac aaataggaga tgttattttg aaaaggacta ctcgctacag tagaaaatat
     7381 gttccgagta ttgatggact tcgagcactc gcagttattg ctgtaatcgc ctaccacttg
     7441 aattttagct gggctaaagg tggattcatc ggcgtagaca tatttttcgt cttatctggt
     7501 tacttaatta caaatatttt attaacacaa tgggaaaaaa atcaatcact tcaattaaag
     7561 caattttgga ttagacgttt tcggcgactc attcctgctg tttatgtaat gattgtagtc
     7621 gttgtcatct atgccgtctt cttccatcca gaaattttaa aaaacttacg cggcgatgca
     7681 attgcttctt tcttttatgt aagtaactgg tggtttattt tccacaatgt ttcttatttt
     7741 gattcatttg gacttccatc accacttaaa aacttatggt cactagccat tgaagaacaa
     7801 ttttatttaa tatggcccgc ttttttactg gtatttctca aatgggtaaa aaatccaaaa
     7861 ctattattaa aaatcgtcat tggccttggc cttctctccg cagtttggat gacgattttg
     7921 tacgttcctg ggacagatcc aagtcgtgtt tattacggta cggatacgag agcatttgat
     7981 ttgctagcag gttgtgcact tgcatttgtc tggcctttca atcgccttag tcctgtagtt
     8041 ccaaggaaaa gtaagtcagt tctcaatatt gcaggaacaa tcagtatttt atgttttatt
     8101 ctattcacag cttttgtaag tgaatatcaa cctttcttat atcgcggtgg cttgttattc
     8161 gttgcaattc tcggcgttat catgattgca actatctcac atcccgcctc ttatctaagc
     8221 aagattttca gttttaaacc acttagatgg attggaacaa ggtcttacgg tatttactta
     8281 tggcattatc caattataac gttgacaaca cctgtactag aaattactca acctaatata
     8341 tggcgagcta tcctacaagt tgccgctact tttattattg ctgagttatc gttccgcttt
     8401 attgaaactc ccattcgaaa aaatggtttt atcaattatt ttaaaggctt caaagataaa
     8461 aactatttca tttggaaaaa taaacctgtt ggtaaatggt tgagtatcgc tggtgttgtt
     8521 gctgttttag caatatttac acttggtatg tcaaacgttc tttccgtcaa taccaatgca
     8581 gaaaaacaac aaacgtctgt taaaacaacc acctctacac cagacgagaa gaaagatgat
     8641 aaaaaagaca aagaagataa agctactaaa gaaaaagaag actccaaaga aacggacgca
     8701 aataaagcta acggacaaaa ccaaacacaa gtgccagaca acaaaaataa aacagccgcc
     8761 acgccaaaaa caatgattac acaaacagtg gcgattggtg attcagtcat gcttgatatt
     8821 gaaccatact tgaaagaagc cgttcctaat atcacaattg atggtctagt tggacgtcaa
     8881 ttaagagatg ctattacaac cgctactggc tataagaaat tcaacagcga aaatagctcc
     8941 gttattcttg aacttggtac aaatggtccc ttcacagaag agcaattaaa tgatttatta
     9001 gatcaatttg acaaagcaac gatttattta gttaatacgc gggttcctcg tggttggcag
     9061 tctgatgtaa ataaaagtat tgccaatgct tcatcacgac ctaatgtaac tgttgttgat
     9121 tggtattcaa gatctagtgg tcaatctcag tactttgctc cagatggtgt tcatttaact
     9181 aaatctggtg ctcaagctta tgtcgccatg ttaactagcg tcatgaataa ataactatcc
     9241 gcccttaatt gggcggatag ttatttttat tttttcctag aaacaaacca gcttaagcta
     9301 attagtaaaa atcctactgt tgcacctgct acaggcaagg aatcccctgt tttaggtaaa
     9361 gcctctttgc ttgtttctgc tttagctttt ttctcattta cagttaaaga tggaattttg
     9421 tgacttggca cttctggttt attgacgttt ggtttgataa ccggattagg tgttgggctt
     9481 gggtccggtg ttggatctgg tgttggtgtt ggatttggcg tcggatctgg tgttggattt
     9541 ggcgttgggt ctggtattgg tgtttctttt tcaacaataa ccgtcacttg cactggcaaa
     9601 gctttttgta aatcattttc tgcgtttagt gtaacgacat attttcctgg tttggaaaga
     9661 tcaacaacag tcgcaaaatc acttgtaatc gctgttccat catttgtttt cgctttgatg
     9721 tctgctaaaa attctgcttc tgttttagat gtatccacct tataagtgat tttttcatct
     9781 gccgtaatcg ctgtcttctc tttaattgtt acgtttactt gaactggggc tgcctttaat
     9841 ccagaattat tctcagattg taaagtaact gtgtacgttc caggagtctt gaaatctact
     9901 ttatcagcga aatcacttgt aacagttgat ccgtcatctg tttttgcatg aatatctgct
     9961 aaaaattctg cttctgtcac tggttgattt tctatatatg tttttccact gtcagctgag
    10021 atgtttacag aatggtcgac agtgaagtaa tgatcataga taggtacaga tatattgtac
    10081 gccccaccat ttttaaactg atcaggaata ttataagttt gagaactcaa atcgattttc
    10141 gcgttgtact ccattttttc aagattatca aaatctgctt tacttacatc acttactgtt
    10201 aagccatcac tcgtaattgt taggcgattg ccatttactt gtttctcatt cattgcaaag
    10261 taagtgtcgc tgcctgcagt tgattttacg aaatctggta catagccatc ataattaact
    10321 gttcgttccg tcatcaagct gaatgggacg tataatgttt gcttttctgc attataagtt
    10381 aatgcactac ctttaatatc ggagttaatt agttttttac cccctatagt ttgggaaaat
    10441 gcatacagtt gattcaattt agggaaatct tctatacctc gataatcatg tactccgtca
    10501 aattgaatat ttaagctctt aagttctggc aatgttttaa gtggcatgat atccgttatt
    10561 gcaccattat aactaaggtc aatactattt actttaggaa gtgtgtttat tttagttaaa
    10621 atagaatcat catgtgcact gtgcgaaata tccagtagag ttaaactcgt cagcccactt
    10681 aaatttggaa ttttatcgga tgtaacatct tttcccataa ttcttaatcg ttcaagatta
    10741 ctcaacccgc ttattggatt atagtttgtt gcatgaatat tatttatggt taaatctttt
    10801 atattatggg catattcaa
//
LOCUS       DABQVC010000098        10754 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.098,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000098 DABQVC010000000
VERSION     DABQVC010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10754
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.098"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(16..762)
                     /gene="fabL"
                     /locus_tag="IBJ56_001742"
     CDS             complement(16..762)
                     /gene="fabL"
                     /locus_tag="IBJ56_001742"
                     /EC_number="1.3.1.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabL"
                     /protein_id="HAM3417996.1"
                     /translation="MNRVALVTGSSRGLGREIAIALANEGYDIAVNFSRNRKKAEEVQ
                     QEIEQLGRKCVIFKANVGDVEKIRDLFKAVDEEFGRLDIFINNAASGVLRPLMELEES
                     HWDWTMNINAKALLFAGQEAAKLMQRHQSGKIISLSSIGSIRYLENYTTVGVSKAAIE
                     SLTRYLAVELAPFGIAVNAVSGGLIETDALNHFPNREELLKDAISKTPAGRMIEPNDL
                     VNAVLFLASEKADMIRGQTILVDGGRTLLV"
     gene            complement(766..1863)
                     /gene="mutY"
                     /locus_tag="IBJ56_001743"
     CDS             complement(766..1863)
                     /gene="mutY"
                     /locus_tag="IBJ56_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HAM3417997.1"
                     /translation="MRKMKRLTWDETKITAFQEALVSWYEANKRVLPWRENTDPYRIW
                     VSEIMLQQTKVDTVIPYFNRFMTQFPTMEDFVQADEADILKAWEGLGYYSRVRNLQTA
                     MKQVMADFSGEVPTDLTTILSLKGVGPYTAGAILSIAYNQAEPAVDGNVMRVIARVLE
                     ISEDIMKVSTRKIFEEVLYQLIDKENPAAFNQGLMEIGALVCTPTKPMCMLCPLQPFC
                     EAHKNGVETNYPVKIKKVKTKTKELLSIIVISEDGKIAIEKRPENGLLANMWQFPTIE
                     ISKKENEEVAKLQFLHNYGLDVLLEDEPIAHIKHVFSHLVWKMDIRVAKLQSAIPNEN
                     WYFATEEEMKRLAFPVPYQKMWQAWKDFKGE"
     gene            2063..3043
                     /locus_tag="IBJ56_001744"
     CDS             2063..3043
                     /locus_tag="IBJ56_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAM3417998.1"
                     /translation="MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIP
                     DIDTVLKLKNNADYIRNHRGITHSLPMLAIWPLLISSVLYLLFPAATFIHLLLWTFIA
                     VGLHIFVDIFNAYGTQAVRPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLGSPVLAT
                     FVTLYVILALYYVARFVTQRMIKHAVQNLIPDSEEIIIASTIHFFQWRVAVTTKDHYY
                     VGRAFKRNISIYEKFDRLPVPDNEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYV
                     TFTDLRYRSNGHYPFVAVVKLDDDLKIVSSYTGWIFSTEKLYKKLAPVSI"
     gene            complement(3072..3533)
                     /locus_tag="IBJ56_001745"
     CDS             complement(3072..3533)
                     /locus_tag="IBJ56_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HAM3417999.1"
                     /translation="MKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFSNETVTI
                     LPGEKHIFWTDIKSYMQEEEVLNIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGN
                     IGIAIKNFSNEAVAIEAGERVAQGVFQKYLVADTDIIANESRVGGVGSTGR"
     gene            complement(3545..3778)
                     /locus_tag="IBJ56_001746"
     CDS             complement(3545..3778)
                     /locus_tag="IBJ56_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418000.1"
                     /translation="MYTYLDELTAELMTKNPHLDKEQALWWIEMLWSDFESSYAKAGY
                     PYRGPEYAADYVRQQIKRHGSFLHQVERKDPNK"
     gene            complement(3780..4589)
                     /gene="recX"
                     /locus_tag="IBJ56_001747"
     CDS             complement(3780..4589)
                     /gene="recX"
                     /locus_tag="IBJ56_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HAM3418001.1"
                     /translation="MKITSISVQQKNKERYNIFIDEKYNFSVDEEVLARYQLMKGKVL
                     TEAEIEEIKQADMVRKGLNKAINFLSHRVRSEKEIRDYLRKQEMEAFAIDEILKKLAD
                     MDYINDLEFAELYTKTQIKTTLKGPRTIERELVEKGLTREIITQVIEEYSDEAQLENA
                     TKQAIKIMKRNNKSAKKMLQQKIITDLIQKGYTSELAKVAATEATSELDVADEAEILQ
                     KQIEKTMRKNKRYKPSIAKQKTITSLMQKGFSYDTIQSYLTENEISFEEEE"
     gene            4687..5589
                     /locus_tag="IBJ56_001748"
     CDS             4687..5589
                     /locus_tag="IBJ56_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family protein"
                     /protein_id="HAM3418002.1"
                     /translation="MHILLTGATGFIGDHLVHELEKSDHELYILTRQKLKNRANVHYI
                     EWLNEDKLPNLEDLPVDVCINFAGAGLMDEKWTYDRKKVIVNSRIEATSALLSIVKKM
                     KSKPKLWINASAIGAYTSSKSTIYLDTEENNYADNFLGKTVYEWEKTASAASDLGIRV
                     VYARFGLVLGTDAGSFPVFEKLFQTYTGGRFGNGRQWYSWIHVDDVVAAILFIFDHEQ
                     INGVVNFTAPHPVQEKKFAERLGKKMHKPYKTPVPKKIIKFILGERAMTILDSQRAYP
                     EKLMSNHFEFRFETLQEALDDLLD"
     gene            complement(5610..8207)
                     /gene="mprF"
                     /locus_tag="IBJ56_001749"
     CDS             complement(5610..8207)
                     /gene="mprF"
                     /locus_tag="IBJ56_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional lysylphosphatidylglycerol
                     flippase/synthetase MprF"
                     /protein_id="HAM3418003.1"
                     /translation="MKEKLMQAYAWFQKNSTVVKIVFITFVMAFVIFEIINIATGIDY
                     PSLKENLTSQSPEQIFIMFIVGLIAVTPMLLYDYVIVKLLPGKFSPSHVIASGWITNT
                     FTNIGGFGGVLGASLRASFYGKNASHKEILLAISKIALFLVSGLSIYCLVSLATLLIP
                     GFANHFVNYWPWLLAGGLYFPILFTITKWKSKSLFVDLPIKRELTLIIASLLEWGFAF
                     GCFAIIGTLMGEPVDIFKVFPLFVIASVIGIASMVPGGVGTFDVVMILGLSQLGVSQE
                     LALAWMLFYRIFYYIIPFVVGLLFFVQKAGKKVNDFLEGLPLLFLQKVAHRFLVIFVY
                     GSGLLLILSSAVPNAIYHVPFLYKIMPFNFLFTSQITIVAFGFLLLGLARGIECKTKK
                     AYIITVIVLGCAIFNTLARVFSMKQAIFLGIVLLCLFLARNEFYREKLVYTWSKVIID
                     SIIFIVCLAGYIVIGIYNSPNIKHSKEIPDYLRIASEHLWLVGFVGVFIAVVSLVIIY
                     IYLSTTKEKLGSPFEAVKVREHLAKWGGNEVSHTMFLRDKLLFWAANGEVLFSYRIIA
                     DKMVIMGEPTGNMDKMEAAIEEVMMNADRFGYRPVFYEVRGTMIPYLHDHGFDFIKLG
                     EEGFVDVQNFTMSGKKKKGERALMNKLEREGYTFEIIEPPFNHETWTTLRAVSDEWLD
                     GREEKGFSLGFFDTYYLEQAPIAIAKNGEGTVVGFASMMPSYTEEMTSIDLMRYSKEA
                     PSGIMDFLFINLFEKAKEDGFQTFNAGMAPLANVGESKYAFLGERLAGLVYRYSQGFY
                     GFKGLRNFKSKYVTEWEQKFVAFRKRSSIAFTMLQLMILVGKKRPLANSQVVLDFPLE
                     EETKKPDSE"
     gene            complement(8234..8908)
                     /locus_tag="IBJ56_001750"
     CDS             complement(8234..8908)
                     /locus_tag="IBJ56_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HAM3418004.1"
                     /translation="MQVQKCRFFVLLLPALYLLYGISLALQFGNNADLINTIANSCLL
                     FLATIILTNMARLKNWIDFIWFCVFILYIIILLHLVAYIAVGDFVNSTYTGNFHIQKE
                     MINLIPFTTIENTFQQTLPTMPTIIQILGNVLLLCPLSFFMLYFKITSTAGKTLLVIF
                     LTSCGIELLQFAQTTMITGFESISLPPKRSTDIDDIILNTLSGLIGILLAYAVPSVRK
                     RINKRR"
     gene            9116..10081
                     /locus_tag="IBJ56_001751"
     CDS             9116..10081
                     /locus_tag="IBJ56_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HAM3418005.1"
                     /translation="MKELLGLLKEGNKSALTAALVNTVVSIIKGITYFFTGNIAMFAE
                     TLHSLGDAANQFFVFIGSALSKKRPTKRFPHGFGRMVNLVLLGAVIVVGIMAFETIRE
                     GFAHIIHPTSSTGFLINLTVLLLCTVLEFSVLVKAMHEIAHDVGLESKGLRLFKDSIL
                     NLGKAKAATKLVFLEDSVATGGGLLAMIAVIISHFTPFHQAEGIASMLIGVMMFIVVG
                     KVFLDNAAGVIGESDQSMHLTVGQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPM
                     LTLAEVDDIKDRLEESIGKLRGVADVLISFDEDDAIRNWEYGDGR"
     gene            complement(10126..10668)
                     /locus_tag="IBJ56_001752"
     CDS             complement(10126..10668)
                     /locus_tag="IBJ56_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418006.1"
                     /translation="MRITGERIYLRPFQITDANQKLAFHLANKAFFEGYSMERDDRFY
                     TIEEQQSLISRLEDFAASDVEYYYGIFLHDTDELIGTINLFSILRESLQSAFIGYFLD
                     KEHNGNGYATEAVELIVDFGFDILGLHRIEAGVMPKNERSKQVLLKAGFHLEGLAVQN
                     VRINGNWEDHQVLAIINPGD"
BASE COUNT         3219 a         2086 c         1913 g         3536 t
ORIGIN      
        1 acctattttg ttttactata ctaaaagtgt tctgccgcca tctactaaaa tagtttgccc
       61 gcgaatcata tctgcttttt cgctcgcaag gaataatacg gcatttacta agtcattggg
      121 ctcaatcatt cgacccgctg gtgttttact tatagcatct tttaacaatt cttcacgatt
      181 gggaaagtga tttagtgcgt ctgtttcaat taagccgcca gaaacagcat taactgcaat
      241 gccaaaaggt gcaagttcaa ctgctaaata ccgagtaagt gattctatcg ccgcttttga
      301 aacgccaact gttgtgtaat tttctaaata acgaatcgag ccaatcgagc ttaagctgat
      361 gattttcccg ctttgatggc gttgcattaa tttagctgct tcttgacctg caaacaacag
      421 cgcttttgcg ttaatattca ttgtccaatc ccaatgtgat tcctctaact ccatcaatgg
      481 tcgaaggaca ccacttgctg cattgttaat aaaaatatct aatcggccga attcctcatc
      541 tacagcttta aataagtctc taattttttc cacgtcacca acatttgctt taaaaataac
      601 gcattttctt cctaattgtt caatttcttg ttgtacttct tctgcttttt tgcgatttct
      661 ggaaaaatta acagcgatat catagccttc atttgcaagt gcgatggcta tttctcttcc
      721 aagtcctcta ctacttcctg ttactaatgc cactctgttc atttgttatt cccccttaaa
      781 atctttccac gcttgccaca ttttttgata tggtactgga aaagcaagtc gcttcatttc
      841 ttcttctgtt gcaaaatacc aattttcatt tggaattgct gactgaagtt ttgccacacg
      901 aatgtccatt ttccatacta aatgagaaaa aacgtgtttg atatgcgcaa ttggttcgtc
      961 ttctagtaaa acgtctaagc cataattatg taaaaattgt agtttagcta cttcctcatt
     1021 ttcttttttc gaaatttcaa tagtaggaaa ttgccacata tttgcaagca aaccattttc
     1081 tggtcgtttc tctatggcaa tttttccgtc ctctgaaata acaatgatgc ttaatagttc
     1141 tttggttttc gttttcactt tttttatttt tactggataa ttcgtttcaa cgccattttt
     1201 atgcgcttcg caaaacggtt ggagcggaca aagcatacac attggttttg ttggtgtaca
     1261 aacaagcgca ccaatttcca ttaaaccttg gttgaaagcg gctggatttt ctttgtcaat
     1321 tagttgatat aacacttctt caaaaatttt ccgggtggac actttcatga tgtcttcact
     1381 aatttctaaa acgcgggcga tgacacgcat aacattgcca tccactgctg gttcagcttg
     1441 gttgtaggca atactcaaga tagctccggc tgtatacggt cccacacctt taagcgataa
     1501 aatagtggtt aagtcggtag gaacttctcc agaaaaatcg gccatcactt gcttcatggc
     1561 tgtttggagg tttctgacac gagaataata gcctaagcct tcccacgctt ttaaaatatc
     1621 cgcttcatcc gcttggacaa aatcttccat cgtcggaaat tgagtcataa agcgattaaa
     1681 ataaggaatt actgtgtcga cttttgtttg ttgaagcatg atttctgaga cccaaattct
     1741 gtaaggatcg gtattttcgc gccacggtaa gacgcgctta ttcgcttcat accaggaaac
     1801 gagtgcttct tgaaaagcag ttatctttgt ttcatcccaa gttagtctct tcatttttct
     1861 cattttcccc tcgtaattct aatagatttc taatgtgtgt tgctccggat gtgtagtata
     1921 atgtagacag ggaataaaat agtataccca ttcttaagcc gatttctatt ataccgaatg
     1981 ctggcttgat tgaatagtgt tgtgctctta caggcagcac cacttgtatt ttttaagacc
     2041 gattttagag gaggcaaagt cattggatac tggcacacat gtagtaatgg gaattgcact
     2101 cggagcgtta gcaaccgtag acccggtagt tgccggaagt tctcaagctg ccattggtat
     2161 tatgacagca acaattattg gttcacaaat tccagatatt gacactgtac taaaattaaa
     2221 aaacaacgct gattatatta gaaatcaccg aggaataaca cattccttgc cgatgcttgc
     2281 aatttggcca ttacttattt catctgtttt gtatttactt ttcccagcag caacatttat
     2341 tcatttactg ttatggacgt ttatcgcggt gggattacac atttttgtag atatttttaa
     2401 tgcttacggg acacaagcag tcagaccgtt taaagaaaca tgggtcgcat ttggatttat
     2461 caataccttt gattggttca ttttcggttc tcatgttgtg gctattgcgg cttggttgtt
     2521 aggttctcct gtattagcta catttgtaac actctacgtc attttggcac tttattatgt
     2581 ggcgagattt gttacacaac gaatgattaa acatgcggtt caaaacttaa ttccagattc
     2641 agaagaaatc attattgctt ccaccatcca cttcttccag tggcgtgtgg cggtaacaac
     2701 caaagatcat tactatgtag gtcgagcttt caaacgcaac atctctatct acgaaaaatt
     2761 tgaccgatta cctgttccgg ataatgaaat catccgttct gcgaaaaaag ataaaaatct
     2821 agctgctttt atctcattct ccaaagttta caactggcgc attgaggaaa agctagatgg
     2881 gacttatgta acatttaccg atttacgtta tcgtagcaat ggacattatc catttgtagc
     2941 agtggtgaaa ttagatgatg atttaaaaat tgtttcatct tacactggtt ggattttctc
     3001 cacagaaaaa ttatacaaaa aactagcacc tgttagtatt taaaaaaaga cccggaatcc
     3061 cgggtctttt tttatctgcc tgtacttcct accccaccaa cacgggattc gtttgcgata
     3121 atatctgtat ctgcaactaa gtatttttga aatacgcctt gagcaacacg ttcccccgct
     3181 tcaatagcta ctgcttcatt ggagaagttt ttaatggcaa tcccaatatt gccatcatta
     3241 cctggattac tataataaga agaatcaata attcctgtac cgttacacag aagtaaacct
     3301 ttctttatac caatggaaga acggacatag atattcaaaa cctcctcttc ctgcatataa
     3361 cttttaatat ctgtccaaaa aatgtgtttt tctcctggta agatggttac tgtttcatta
     3421 gagaagaaat catagccggc cgaacctttg tccccgcgta ttggtaaaga tattgtttgt
     3481 tccggaaatt ttctgcttgc ttcatttact acttcaaatc ctcttacttt caattcgttc
     3541 actcctattt gtttgggtct tttcgttcta cttggtgtaa aaaactgccg tggcgcttga
     3601 tttgctgacg gacataatct gccgcgtact ctggaccacg atacgggtaa cctgctttag
     3661 catatgaact ttcaaaatct gaccaaagca tttcaatcca ccacaaggct tgctctttat
     3721 ctaaatgcgg atttttagtc attaattccg ctgttagttc atctaaatac gtatacaatt
     3781 cactcttcct cctcgaaact gatttcattt tcagttaggt atgattgaat tgtatcataa
     3841 gaaaaacctt tctgcattag cgatgtgatt gttttttgtt tggcaatgct tggtttgtag
     3901 cgtttatttt tacgcattgt tttttcgatt tgcttttgta aaatttctgc ttcgtccgcc
     3961 acatccaatt cactcgttgc ttcagtagcg gctactttgg ctagttcgct cgtatagcct
     4021 ttttggatta aatccgtgat aattttttgt tgaagcattt ttttggcgct tttgttattt
     4081 cgcttcataa tttttattgc ttgtttggtg gcattttcta gctgagcttc atccgaatat
     4141 tcttcgataa cttgagtaat tatttctcta gttagtcctt tttcgactag ttcgcgttca
     4201 atggtccgcg gaccttttag ggttgttttg atttgcgttt tcgtatacag ttccgcaaat
     4261 tcgagatcat taatataatc catgtcggct aattttttta aaatctcgtc aattgcaaaa
     4321 gcttccattt cttgctttct taaataatcg cgaatttctt tttccgagcg aacacggtgg
     4381 gataagaagt tgatggcttt atttagccct tttcgaacca tatcagcttg cttaatttct
     4441 tctatttcgg cctcggttag aactttacct ttcatcagct ggtagcgggc taaaacctct
     4501 tcgtctacgc taaagttgta tttttcatca ataaaaatgt tgtagcgttc tttgtttttc
     4561 tgctggacac ttatggacgt gattttcata atccgcctcc ttctcctatc tatcataccg
     4621 caaaaaatgg ttttaatact actaaaaagg gaataaacta gttaggacaa tgaagaggtg
     4681 ataaaattgc atatcttact tacaggcgca acaggtttta ttggtgatca tttagtgcat
     4741 gaattagaaa aatctgatca cgagctttat attttaacaa gacaaaagct aaaaaaccgc
     4801 gcaaatgtac actatattga atggttaaat gaagataaat tgccgaattt agaagattta
     4861 ccagtggatg tttgtattaa ttttgctggt gctggtttga tggatgaaaa atggacttac
     4921 gatagaaaga aagtgattgt aaatagccgc atcgaagcta cttcagcact cttatcgatt
     4981 gtgaaaaaaa tgaaatcaaa accaaaattg tggattaatg caagtgcaat tggagcctac
     5041 acttcctcca agtcaacgat ttatctcgat acagaagaaa ataattacgc agataacttc
     5101 ttaggaaaaa cagtctatga atgggaaaaa acagcgagtg cggcaagtga tttgggtatt
     5161 cgtgttgttt atgctcgctt tggtcttgta cttgggactg atgctggctc gttccctgtt
     5221 ttcgaaaaat tattccaaac ttatacaggg ggacgctttg gtaacggcag acaatggtat
     5281 tcttggattc atgtggatga tgttgtggcg gcaatcttat ttatttttga ccacgaacaa
     5341 ataaacggtg ttgttaattt tacagcccct catcctgttc aagaaaagaa atttgctgaa
     5401 cgccttggaa aaaaaatgca taaaccgtat aaaactcctg tgcctaaaaa aattattaaa
     5461 ttcattctag gtgaacgtgc catgactatt ttggacagtc aacgtgctta tccggaaaaa
     5521 ctgatgagta accattttga atttcgcttt gaaacgttac aagaagcttt agatgacttg
     5581 ttagattgat aaaaaaccag attctgattt tactcagaat ctggtttttt tgtttcttct
     5641 tcaagcggga aatcaaggac tacttgacta tttgcaagtg gtcttttttt accaacaaga
     5701 atcattaatt gtaacatggt gaaagcaata gaacttcttt ttctaaaggc aacaaatttt
     5761 tgttcccatt ctgtaacata tttggattta aaattacgca atcctttgaa gccgtaaaaa
     5821 ccttgactat agcggtatac cagtccggct aatcgttcac ctaggaaagc atatttactt
     5881 tctccaacat tggcaagcgg cgccataccg gcattaaatg tttggaagcc gtcttcttta
     5941 gctttttcga atagattaat gaaaaggaaa tccataatac ctgatggtgc ttctttagag
     6001 taacgcatta ggtcaatcga agtcatctct tctgtatatg acggcatcat cgaagcaaat
     6061 ccaacgacag taccttctcc gtttttagcg atagcaatcg gagcttgttc gagataatac
     6121 gtatcgaaga atcctaatga gaaacctttt tcttctcttc catctagcca ctcatcagaa
     6181 actgctcgta aagttgtcca agtctcgtga ttgaatggtg gttctattat ttcaaaagta
     6241 taaccttctc gttctaattt attcatgaga gcacgctcac cttttttctt tttaccactc
     6301 attgtaaagt tttgaacgtc tacaaaacct tcctctccaa gcttgataaa gtcaaatccg
     6361 tgatcatgta aatatggaat catcgtgcct cgaacttcat agaaaacagg tcgatagcca
     6421 aatctgtcag cgttcatcat aacctcttca atcgctgctt ccattttgtc catattccca
     6481 gttggttcgc ccatgatgac cattttgtcc gcaatgattc ggtaagagaa aagtacttct
     6541 ccattagccg cccaaaaaag tagtttatct cgtaagaaca tcgtatgact gacttcattt
     6601 ccgccccatt tcgctaaatg ttcacgtact ttgacagctt caaatggaga acctaatttt
     6661 tcttttgttg tggataaata aatataaata atgactaaac taacaacagc aataaatacg
     6721 ccaacaaaac caactaacca taaatgttct gaggcaatgc gtaaatagtc aggaatttct
     6781 ttggaatgtt tgatatttgg tgagttgtaa ataccaataa caatgtaacc tgctagacat
     6841 acgatgaaaa taatgctatc aataattact ttactccatg tataaactag tttttctcgg
     6901 taaaattcgt ttcgagctaa gaataaacat aatagcacaa ttcctaaaaa gatcgcctgc
     6961 ttcatcgaaa atacgcgagc aagtgtgttg aaaatcgcgc aacctagaac aattactgta
     7021 ataatatacg ctttctttgt tttacattca attcctctcg caagtcccag tagtaaaaag
     7081 ccaaatgcaa cgatggtaat ttgggaagtg aataagaaat taaacggcat aattttgtat
     7141 aagaaaggca catggtaaat ggcgtttgga acggcggaag ataaaatcaa caataatccg
     7201 gaaccgtaaa caaaaataac taagaagcga tgagccactt tttgtaaaaa taatagcggt
     7261 aacccttcaa gaaagtcatt tactttttta ccagcttttt ggacgaagaa aagtaatccc
     7321 actacaaagg gaataatata gtagaaaatt cggtaaaata gcatccaagc gagcgctaat
     7381 tcttgagaaa cgcctaattg gctaagtccc agaatcatca cgacgtcaaa tgtccctact
     7441 ccaccaggta ccatcgaagc aatcccaatt accgaagcga taacaaataa tgggaacact
     7501 ttgaagatat cgactggttc tcccatcaat gtaccaataa tcgcgaaaca tccaaaagcg
     7561 aagccccact ccaaaagaga ggcgataatt aacgttaatt ctcttttgat aggtaaatca
     7621 acaaaaagtg acttactttt ccatttcgtt attgtaaata agattgggaa gtaaagacca
     7681 cccgcaagaa gccatggcca gtaattaaca aaatgatttg caaatcctgg aatgagtaaa
     7741 gtggctaatg atactaaaca gtaaatcgat aaaccagata ctaaaaataa agcaatctta
     7801 gaaatagcga gtaatatttc tttatgagat gcattttttc cgtaaaaact tgctcttaaa
     7861 ctggcaccta atacgccacc aaaaccacca atattagtaa atgtattcgt aatccaacca
     7921 gaggcaatca catgacttgg ggaaaacttt ccaggcaaca acttaacgat gacataatca
     7981 tacaatagca ttggagtgac agcaattaag ccaacaataa acataataaa tatttgttct
     8041 ggactttgag aagttaaatt ttcttttagc gatggatagt caattcccgt cgcaatatta
     8101 ataatttcaa aaataacaaa tgccatcaca aaagtaataa aaacgatttt tacgacggta
     8161 ctattttttt gaaaccaggc ataggcttgc attaattttt ctttcataac agagtctcct
     8221 taacgatttc cattcatctt cttttattga ttcgttttct aacagatggt acagcataag
     8281 ctagtagaat gcctattaat ccacttaacg tatttaaaat gatatcatct atatctgtag
     8341 aacgctttgg tggtagcgat atactttcaa atcctgtaat catcgttgtt tgcgcaaatt
     8401 gaagtagttc gatgccgcaa gatgttaaga atatgactaa taatgttttt cccgcagtgc
     8461 ttgttatttt aaagtaaagc atgaagaaag acagtggaca taacaataaa acattcccta
     8521 aaatttgaat aatagtaggc atcgttggta atgtttgctg aaatgtattt tctatggtgg
     8581 taaaaggtat taagttaatc atttcttttt gaatatggaa attcccagta taagtactgt
     8641 ttacgaaatc cccaacagct atgtaagcca caaggtgtaa taagataatt atatatagaa
     8701 taaaaacgca aaaccatata aagtctatcc aattctttag tctcgccatg ttggttagta
     8761 tgatggttgc taaaaaaagt aagcaactat ttgcaatggt attgattaaa tctgcgttat
     8821 tcccaaattg tagtgcaagc gaaatcccgt acaagagata taacgctggc aataacaaca
     8881 caaaaaaacg gcatttttgg acttgcattc tcgtattcca acgccttccg tttcaaaatc
     8941 agctctcaga ctctctgaat aagctcctag tatcagttta gcagatataa aaatgaaaag
     9001 aaagcttgtt tgtgcttaca tttttgcaag cttctgtaag gctttcgggt tcttattttc
     9061 tttttggtaa aaaaagtgct acaatttctt aatgatattt gtggaggaga ctaggatgaa
     9121 agaattatta gggttattaa aagaaggtaa caaatccgcc ttaacagcgg ctcttgttaa
     9181 caccgttgtt tctattatta aaggtattac ttattttttt acaggaaata tcgccatgtt
     9241 cgcggaaacg ttacatagtc ttggagatgc agcaaatcaa ttttttgttt tcatcggctc
     9301 tgctttaagt aaaaaacggc caacaaaacg ctttccacat ggtttcgggc gaatggttaa
     9361 cttagtgcta cttggcgctg tcattgttgt tgggataatg gcttttgaga cgattcgtga
     9421 aggttttgcg catattatcc atccaacaag ttccactggt ttccttataa accttactgt
     9481 gctcctactt tgtaccgtgc tagaattttc tgttttagta aaagcaatgc atgagattgc
     9541 gcacgatgtt ggcttagaat caaaaggact tcgcttattt aaagacagta tcctaaatct
     9601 aggtaaagca aaagctgcaa ccaaactcgt attcttggaa gattccgttg caactggtgg
     9661 tggacttctt gcgatgattg cggttattat ttctcacttt acccctttcc atcaagcaga
     9721 aggtattgca tccatgttaa ttggtgtaat gatgtttatc gtcgttggta aagtcttttt
     9781 ggacaatgcg gctggagtta ttggcgaatc agatcaaagt atgcatttaa ctgtcggtca
     9841 gctcgtaatg agtgatcctg atgtgcgcga tattcaagtt ctaaccgttc ttaaagaagg
     9901 cgatgttttc catgtcgatg tggaagtgga attagatccc atgctcaccc tcgctgaagt
     9961 ggacgatatt aaagaccgtt tggaagaaag tatcggaaaa ttacgcggtg ttgctgatgt
    10021 acttatttca tttgatgaag atgatgccat ccgtaactgg gaatatgggg acggacgtta
    10081 aaaatagaaa aagccaagtg cgcggactgc gacacttggc tttttttagt ctccaggatt
    10141 aataattgct aggacttgat gatcttccca atttccattt atgcggacat tttgtactgc
    10201 gagcccttct aaatggaagc cagcttttaa aaggacttgt ttggaacgtt catttttcgg
    10261 cattactcct gcctcaattc ggtgcaggcc aagaatgtca aaaccaaaat ctactatcaa
    10321 ctccactgcc tcggttgcat aaccatttcc attatgctct ttatccagaa aataaccaat
    10381 aaacgcagat tgtaaagatt cccgcaaaat actaaataaa ttaatcgtac caataagttc
    10441 atccgtatca tggaggaaaa tcccataata gtactccaca tcactcgcag cgaaatcttc
    10501 taatcgtgaa ataagcgatt gctgttcttc tatcgtataa aaacgatcgt ctcgctccat
    10561 agaataacct tcaaaaaaag ctttattcgc taaatgaaaa gctagttttt gattggcatc
    10621 tgttatttga aaaggtctta agtaaatccg ttcccccgta atccgcatcc ttatccctcc
    10681 cgcatttttc taaattataa gattgttctg atgtgattgc aagtatcact gctaagctta
    10741 atttttctat atat
//
LOCUS       DABQVC010000099        10753 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.099,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000099 DABQVC010000000
VERSION     DABQVC010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10753
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.099"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            130..795
                     /locus_tag="IBJ56_001753"
     CDS             130..795
                     /locus_tag="IBJ56_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3418007.1"
                     /translation="MEKSGFVADPIYGEIKNEIMANTLENGEKVDIEDIMKRFQVSKR
                     VAFSALHCLHKSGIVCKNIGESGFSVAVNSEAEHREKSRLKLAFFHLNYAVQKLQEQD
                     AEVCATCLRKELVYIKLAAKEQDTDVFINHVKNFYACMIHYTEMPAMEKNIDILSQTL
                     RNMKEKNEKLFFEAFTIDVSQALEDLVTHLEAKEFEKCHSVIQHFYDKNISILFSESK
                     NPE"
     gene            complement(1385..1858)
                     /locus_tag="IBJ56_001754"
     CDS             complement(1385..1858)
                     /locus_tag="IBJ56_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418008.1"
                     /translation="MQIRLSKREDAASMIELEHLVWTPGTTPGSIHFDSEAEFLLKSP
                     PGSKIVVVADDKVVGILGYKSPIPLATNKHVAEIDIAVHPDYQRAGIGQLLMDKMKEV
                     AREKGFIKIALRVLSINQKAIRFYEKNGFKLEGRLEKEFIIQGEFVDDILMAYFL"
     gene            complement(1875..3110)
                     /locus_tag="IBJ56_001755"
     CDS             complement(1875..3110)
                     /locus_tag="IBJ56_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418009.1"
                     /translation="MSKFWVITKQVYKRRVKTKSFLISLLFPVLIAALIAGIPKMVDY
                     FDSSSDITKLAVLAEDPVFAKSLAADKNHFKVNTDIKDKKSAQSALKDGKIDGFVTIT
                     QEDDSVSAVYTTQETAGQDTITRLTEDLTATKIAEKAAAYKITNEQLQSITSPVSVTN
                     DLESNNQLTNHEKDVMSAAVLILTLVIFIFVMSYANIVASEIATEKGTRIMEVILSSV
                     SATTHLFAKLTAIIFMLLTQIGFYIVCGAIVLIAGRNTEMVQNVLDQIAVFPAYYLVL
                     NLLFVILGLLLYILLAAMIGSMVPNVETVAQFIYPMTILAIIGYWGSIAAANAPDNML
                     VIIGSYIPTFSPMMMLARMDLLSVSTIGIFSSLAILLASVVGAFFLTVRLYQGNVLLY
                     SNDGLWKTWKTSLSYAKRK"
     gene            complement(3103..4005)
                     /locus_tag="IBJ56_001756"
     CDS             complement(3103..4005)
                     /locus_tag="IBJ56_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418010.1"
                     /translation="MTLELHNVTKKFGTKVAVNDLSFRVEPGKILGLIGQNGAGKTTT
                     FRLILHFLEASSGKITWDGKEVSKIDPNIIGYLPEERGLYPNVTIEEQLIFFAELKGY
                     PKQKIKAEIDSWLERAEIVGKKTDLIKTLSKGNQQKIQLLSTIIHQPKLVILDEPFSG
                     LDPVNAEILKKFVFDLRASGAAIIFSSHRMENVEELCDSLLMLKKGNVVLQGTTESVK
                     SVFGRKRILIESSHSAAELATLPGVLNVQTHRDGVLQLEIENESDAEKIFEYVTKDGF
                     IQTFSLQAPTLEEIFKWKAGELNE"
     gene            4201..5658
                     /locus_tag="IBJ56_001757"
     CDS             4201..5658
                     /locus_tag="IBJ56_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HAM3418011.1"
                     /translation="MLLTKSEHALINLFLTKNDFLTAKQLAEILDVSSKTIYRKIKNI
                     NETTGRKDIIISEKGRGFKLDYKAYIQAKLETTGDIFGYTPTERREKILLQVLFKSPK
                     YLNVTELYEDYYVGYNSIKNDFSLLNQAIEKYDLALEKRQKEIRVVGTEENIRTAINE
                     VINNLDLSTYDDLKTEYSDLNKADVQFIVRQMELIENKLMISIPYPYDINIFSHLYIL
                     INRFRQGEVEDFKESDDAYIVTNEKLHTIAVEAIDAIEQYLKMKLPERETFHFLQYLI
                     SSRFNHEIELVPGKILPIVEEMTDFYIEQVAAKINMPINKKQLKIELLSHMKPMVNRM
                     NHQINIKNNLLSDIKLEYGRLFEIIKETANDVAKTFKLNTISDDEVGYITIYFAKHME
                     ASPLVKRIIIMCSSGIGTSELLKVKVQKAFPDVEIVDVLSSTRFKNNLQDYQNIDFIL
                     TTINAESTKEIPSLLVSAMFTEKDKIMVKKLMESL"
     gene            5670..6143
                     /locus_tag="IBJ56_001758"
     CDS             5670..6143
                     /locus_tag="IBJ56_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3418012.1"
                     /translation="MDIQDLDISKVISPALVNLDLQATSKLEVIEELTDLLVETGAVA
                     DKDAFIADVLYREEEGKTGLGEGVAIPHGKSASVTSTSIAVGRTKKPVEWESLDDKPV
                     NIIILFAVKNSDATTTHIKLLQKVAILLADDEVIGQFQTVKTKEDLIKLLAKNQD"
     gene            6156..6467
                     /locus_tag="IBJ56_001759"
     CDS             6156..6467
                     /locus_tag="IBJ56_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HAM3418013.1"
                     /translation="MNIIGIAACTSGIAHTYIAKEKLTKAGTALGHNVHIETQGTIGI
                     EDELSAEQVKNADVVIIAADIKISGKDRFKGKRVVEIPTDLAIKAPKQIINKIDKEIN
                     N"
     gene            6484..7578
                     /locus_tag="IBJ56_001760"
     CDS             6484..7578
                     /locus_tag="IBJ56_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HAM3418014.1"
                     /translation="MKKLQIKKHALTAISYMLPLVVASGLLIAIGNLTNGQVIENYKA
                     PYSIPDALVSLGVLGMGLLAPVIAGAIAYSIADRPGIAPGLLMGLIANSIGAGFLGGM
                     LGGYLVGYFVLILVKYLKVPKWAQGLMPMMIIPLISSLVVGLLMYFVVGVPIVWATEA
                     MTSLLQGMQGSMRFVFGAVLGAMAAFDFGGPVNKVASLFADGLLLEGVKEPEAVKILA
                     SMVPPFGVTLSWVVSKLIKKKKYTKSEEDNIKIAFPMGICMITEGVIPIAAVDPIRVI
                     ISCTLGAAVGGGLSMTWGIGSPVPSGGMFIVPAMNEPLLFCLALLIGTCVTAAMLLIL
                     KREPTKEEELIADQGLEEEDEVDLSGIKIS"
     gene            7596..8450
                     /locus_tag="IBJ56_001761"
     CDS             7596..8450
                     /locus_tag="IBJ56_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase family
                     protein"
                     /protein_id="HAM3418015.1"
                     /translation="MYVSMKGMLERANKEHYAVMAINCFNLETARAVIDAAQELRAPI
                     IIDLLQDHLTSHLGSRFLTKPIIKMAEEASVEVAINLDHGHDVAIVKQCLADGFSSVM
                     MDASSFPYEENVAITKKMVEFAEVYHASVEAEVGNIGAVTGDNYTNQEMYTDPKVAID
                     FAKRTGIDALAISYGSSHGDYPEGFTPAFQFDIVREIKSATNMPLVLHGGSGCGAENI
                     RESVRLGINKINVGSDFMKAQVNQIKTNLKENPAVNYVDLIHETIKAGTKAVKNYIQL
                     SGSTGKSL"
     gene            8467..9366
                     /locus_tag="IBJ56_001762"
     CDS             8467..9366
                     /locus_tag="IBJ56_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketose-bisphosphate aldolase"
                     /protein_id="HAM3418016.1"
                     /translation="MLVNMKQLLEVAKENKFAVGAFNVADSNFLRVVVEEAEKNNAPA
                     IIAVHPTELDFTKDDFFQYVLARIKNSPVPFVLHLDHGDNMGDVMRAVRCGFSSVMID
                     GSLLPFEENIRVTKEVVDVCHKLGVSVEGELGTIGKTGNSIEGGVSEIIYTKPEEAEE
                     YISRTGVDTLAVAIGTAHGIYPKDKEPKLRLDILKDIKDLVNIPLVLHGGSANPDAEI
                     AAAVEIGIQKVNISSDYKYAFYKKCREILSTTELWDANAIYPDCIDAAKEVVKYKMEL
                     FESIGQVEKYQQAKTTAWRSELI"
     gene            complement(9396..10106)
                     /locus_tag="IBJ56_001763"
     CDS             complement(9396..10106)
                     /locus_tag="IBJ56_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3418017.1"
                     /translation="MYLKETLDQFASIDNILKLLKKNPSFNKHCIQERLPQKTIITSN
                     KQRKHIYIIEEGFMKLIFDDNKPRDFSYILSKGAFPFLPVYTEDIPEHTMMVALTDIV
                     WWKIDISFFKGMMETEDPRNYLMLHQLAETRRRFYTIAYQEKLTSRESIYYSLSTMIE
                     FGLRISEKIVELPEFLTYQILADHANTSKSYTSKVLGHLREEGILESQRKPWRINDVQ
                     KLQKLIEMNVPLVKIQKN"
     gene            10585..>10753
                     /locus_tag="IBJ56_001764"
     CDS             10585..>10753
                     /locus_tag="IBJ56_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3418018.1"
                     /translation="MQSVFEDLYSKKILEEEFGYTCFLQTLIDNRIPYKKTRIPSNMI
                     LLTEDTINTKVY"
BASE COUNT         3527 a         1810 c         2145 g         3271 t
ORIGIN      
        1 tttgttataa caatacaatc gtttttgtaa cgtaatggac acaatttttc gcaaaaagcc
       61 atatctaaat ggaaaaattt cgtgtaaaat ataacattga aagcaataaa aaataaagag
      121 gttcgaatta tggaaaaaag tggatttgtt gcagatccga tttatggaga aatcaagaat
      181 gagataatgg ccaatacgtt ggaaaatggc gagaaagtgg acatagaaga catcatgaaa
      241 cgatttcaag tcagcaaacg agtagctttt agtgcgctcc attgtttaca taagagtggt
      301 attgtgtgca aaaacattgg ggaaagcggt ttttcagtcg ccgtgaatag tgaagctgag
      361 catcgcgaaa aatcacgatt aaagttagct ttttttcatc taaattatgc tgtacaaaaa
      421 ctacaagaac aagacgcaga agtatgcgca acatgccttc gtaaggagtt agtttatata
      481 aaactagctg ctaaggagca agacacagat gtatttataa atcacgtgaa aaacttttat
      541 gcttgcatga ttcactatac agaaatgccg gcgatggaga aaaatatcga tatactgagt
      601 caaacgctgc gaaatatgaa agaaaagaat gaaaagctat ttttcgaagc ttttacgata
      661 gatgtttcgc aggccctgga agacttggta acgcatctag aagcgaaaga atttgaaaaa
      721 tgccactcag tcattcaaca cttttatgat aagaatatct ctatcttgtt ttcagaatca
      781 aaaaaccccg aatgacgatt tcgtcacgcg gggtttttct tttcggatga gcttgtcttg
      841 ccactcatct gatgggccgg accatgtctg gatgtttctg aataaacata caacattcgg
      901 aaaacggtga ggcattttca aacaagtagg cgaattcttt gtcttgctac ttacttctca
      961 agatattcta gcttacgaat aaatgagcgc ccgtaacttg cttaaatagt ggccataaat
     1021 gatacgatac tttattcgct tatttaccaa tgtagtgagg ataaaaatat tgataaacga
     1081 gcgacgtaac gaaattccgt cttcctacaa ctaagttagc gtaaagtcct tgacgcggcg
     1141 tatactcctc gccttcctcc tgtaagctaa ccgtagctgc ttgacactaa aatccttcac
     1201 cagacgtttt gccggcatat gacaaagctg agaaaaaaat cagcttgtac accaagtttg
     1261 tttcattcgc atcacctttt atttgttcgt tgtactttat atataaccgt tctaaataaa
     1321 tgtaaacgct ttatttgtaa aatgattata aagtcacagt ttgaatttta agccaggcct
     1381 tttgtcagag gaaataagcc attaaaatat catccacaaa ttcgccttga ataatgaatt
     1441 ctttttctag gcgtccttcc agtttaaaac catttttttc atagaaacga atggcttttt
     1501 gattgatgga tagaacacgc aaggcaattt taatgaaacc tttttcgcgt gccacttcct
     1561 tcattttgtc cattaaaagt tgaccaatgc ccgcgcgttg gtagtctgga tgtacagcga
     1621 tatcaatttc tgcgacgtgt ttattggttg cgagtgggat aggagactta taaccaagaa
     1681 tcccgactac tttatcatcc gccacgacaa caattttgga accgggtggg cttttaagta
     1741 aaaattcggc ttcactatca aaatggatac ttccaggtgt tgttcctggc gtccaaacta
     1801 aatgttctaa ttcaatcatt gaagcggcat cttctcgttt agatagtcta atttgcataa
     1861 tttaccaact ttccttattt tctttttgcg taagatagcg aggttttcca agttttccat
     1921 aaaccgtcat tgctgtaaag tagcacattt ccttgataaa gacgaactgt gaggaagaat
     1981 gcaccaacaa cgcttgcgag taaaatagcg agggagctaa agatgccgat agtcgaaacg
     2041 gaaagtaagt ccattcgggc tagcatcatc attggcgaga atgtcggaat atacgaaccg
     2101 atgataacta acatattatc tggcgcgttc gctgctgcaa tggatcccca gtagccgata
     2161 attgcaagaa ttgtcattgg ataaataaac tgggctacag tttcgacatt cgggaccatc
     2221 gaaccaatca ttgctgcgag taaaatgtac aacaacaaac ctaaaataac aaatagtaaa
     2281 tttagcacaa ggtagtacgc tgggaaaaca gcaatttgat ctaagacatt ttgaaccatt
     2341 tcggtgtttc tgccagcaat caggacgata gctccacaaa cgatgtaaaa cccaatttgt
     2401 gttaaaagca taaaaattat cgcagtcaat ttggcaaata agtgagttgt cgcagaaaca
     2461 ctggacaaaa tgacttccat gatgcgcgtg cctttttctg tagctatttc agaagcaaca
     2521 atgtttgcat aactcatcac gaaaataaaa ataactagtg ttaaaatcag gacagcggcg
     2581 ctcatcacat ctttttcgtg gtttgttaac tgattgttgg attctaaatc attggttacc
     2641 gaaacaggag atgtaataga ttgcaattgt tcattggtga ttttataagc ggccgctttt
     2701 tcagcgattt tggtagctgt aaggtcttcg gttaaacgtg taatagtatc ttgaccagct
     2761 gtttcttgcg ttgtataaac ggcacttact gaatcatctt cctgtgtaat cgtgacaaat
     2821 ccgtctatct taccgtcttt cagagcagac tgggcggatt ttttgtcttt aatgtccgta
     2881 tttactttga aatgattttt atcagcagcc aaagatttgg caaaaacagg gtcttctgca
     2941 agtaccgcaa gctttgtaat atcactactt gagtcaaaat agtcgaccat tttcggaata
     3001 ccagcgatga gcgcggcgat taaaacggga aaaagtagtg aaattaaaaa tgattttgtt
     3061 ttcacgcgtc ttttgtaaac ttgcttcgta atcacccaaa atttactcat ttagctcacc
     3121 agccttccat ttgaaaattt cttcgagcgt cggagcttgg agactaaacg tttgaatgaa
     3181 accatctttt gtcacatatt caaaaatttt ctctgcgtca ctttcatttt caatttcaag
     3241 ttgcagaacc ccgtcgcggt gggtttgaac atttaaaaca cctggtaaag tagcgagttc
     3301 tgctgcacta tgactagatt caatcaaaat acgtttacga ccaaaaaccg attttacaga
     3361 ttctgttgtt ccttggagga ccacatttcc tttttttaac attaatagcg agtcgcaaag
     3421 ttcctccaca ttctccatcc ggtgactaga aaaaataata gcagcccctg aagcgcgtaa
     3481 gtcaaataca aactttttga gaatttctgc attgactggg tctaacccgc tgaatggttc
     3541 atctaagata actagttttg gttggtgaat aattgtactt aaaagctgaa ttttttgttg
     3601 attgcctttg gatagtgttt tgatcaagtc tgttttttta ccgacaattt cagcgcgttc
     3661 tagccagcta tcaatttctg cctttatttt ttgttttgga tatcctttta attcagcaaa
     3721 aaatattaat tgttcttcaa ttgtgacatt tggatataaa ccacgttctt cgggcaaata
     3781 accgataata tttggatcga ttttgcttac ttctttgccg tcccaagtga tttttccaga
     3841 agaagcttct aaaaaatgca aaataaggcg aaaagtagtt gttttaccag cgccattttg
     3901 accaattaat ccgagtattt ttcctggttc tactcgaaac gataaatcat tgacagcgac
     3961 ttttgttcca aattttttcg taacattatg tagttcaagc gtcacacgag cacccctttc
     4021 taattgttcc ctgtttttat tatacggttt tattggagga ttgtcttgct aaaagtaaag
     4081 agctacgacg acgacttttt tcacaaactc agccaaaaaa ttgtctagtg tagtggacat
     4141 aacttgttgt aaccgttttc ttttatttgt gtataataga gcgtagaggg aggtgatgaa
     4201 atgcttctaa ccaaatcgga gcatgcatta attaacttgt tcttaacgaa aaacgatttt
     4261 ttgacagcaa agcaattagc tgaaattcta gacgtttcct ctaaaacgat ttatcgcaag
     4321 attaaaaaca tcaatgagac aactggaaga aaggatatca tcatttctga aaaggggcgt
     4381 ggttttaagt tagattataa agcttacata caagctaaat tagaaacgac aggtgatatt
     4441 tttggctata caccaacaga aagacgtgaa aaaatcttgc tgcaagtatt gtttaaatca
     4501 ccaaagtact tgaatgtaac agagctgtat gaagattatt atgttgggta taattcaatc
     4561 aaaaatgatt tctctctttt aaatcaagcc atcgagaaat atgatttggc tcttgaaaaa
     4621 aggcaaaaag aaatacgggt tgttggcact gaagaaaaca tccggaccgc cattaatgaa
     4681 gtgattaaca acttggattt atcgacctat gatgatttga aaacagaata cagtgatctc
     4741 aataaagctg acgttcagtt tattgtgcgg caaatggagt tgattgagaa caagctgatg
     4801 attagcattc cgtatccgta tgatattaat atcttttcac atttgtatat tttaatcaac
     4861 cgtttccgtc aaggggaagt agaagatttt aaagaaagtg atgatgctta tatcgtcaca
     4921 aatgaaaaat tgcatacgat tgctgtagaa gccattgatg caattgaaca atatttgaaa
     4981 atgaagctac cggagagaga gactttccat tttttacaat acttgatttc ttctcgtttt
     5041 aaccatgaaa tcgaattagt tccaggtaaa attttaccga ttgtggaaga gatgactgat
     5101 ttttatattg aacaagtggc tgctaaaatt aatatgccga ttaataaaaa gcaattaaag
     5161 atcgagctat tgagccatat gaagccaatg gtaaaccgaa tgaatcatca aattaatata
     5221 aagaataatt tgttaagcga catcaaatta gagtatggca gactatttga aatcatcaaa
     5281 gaaactgcaa atgatgtagc aaaaaccttt aaattaaata caatttctga tgatgaagtt
     5341 ggctatatta ccatatattt tgcgaaacac atggaagcgt ctcctctagt caaacgaatt
     5401 atcattatgt gttcaagcgg tattgggacg tcagaacttt tgaaagtaaa ggtacaaaaa
     5461 gcttttccag atgttgaaat agtagacgtt ttatcatcta caagattcaa aaataacttg
     5521 caagactatc agaatattga ttttattcta acaacaatta atgcagaaag tacgaaagaa
     5581 atcccatcgt tacttgtaag tgcgatgttt accgagaaag ataaaataat ggtaaaaaaa
     5641 ctgatggaaa gtttatagga ggcgaattca tggatatcca agatttagat attagtaaag
     5701 taataagccc agcacttgta aatttagact tacaagctac aagtaaatta gaagtcattg
     5761 aagagttaac agatttactt gttgaaactg gggcagtagc agacaaagat gcttttatag
     5821 cagatgtatt atatcgcgaa gaagaaggca aaacgggact aggagaagga gtcgctattc
     5881 cacacgggaa gtcggcgagc gttacgagta catccattgc cgttggaaga actaaaaaac
     5941 ctgttgagtg ggagtcgctt gatgataaac cagtaaatat tattattctt ttcgcagtga
     6001 aaaattcaga tgctacaaca actcatatta aattacttca aaaagtagca atcttacttg
     6061 cggacgatga ggtgattggc caatttcaaa ctgtaaagac aaaagaagat ttaattaagt
     6121 tgttagccaa aaatcaggat taggaggagt ttggaatgaa tattattgga atagcagctt
     6181 gtacatcggg aatcgcacat acgtatattg ctaaagaaaa actaacaaaa gcagggacag
     6241 cgcttggtca caacgttcat attgaaacac aaggaacaat tggtatcgaa gacgagcttt
     6301 cagcagaaca agtgaaaaat gccgatgtag ttattattgc tgccgatatt aaaattagcg
     6361 gaaaggatcg ttttaaagga aaacgagttg tcgaaattcc aacagaccta gcgattaaag
     6421 caccaaaaca aattattaat aaaatagaca aagaaataaa taactaggga gtgaaccggt
     6481 atgatgaaaa aactgcaaat caaaaaacat gcacttacag cgatttcgta tatgttaccg
     6541 ttagttgttg cctcggggtt acttattgcc attggaaatt taacaaatgg acaagttatt
     6601 gaaaactata aagcacctta ttcgattcca gatgcacttg tctctctcgg tgtgcttggt
     6661 atgggactgc ttgctccagt tattgctggt gcgattgcct attcgatagc agataggccg
     6721 ggaattgcgc cagggttact tatgggactt atcgccaatt caatcggtgc tggattttta
     6781 ggcggaatgc ttggaggata cttagtcggt tattttgtac ttattcttgt gaaatattta
     6841 aaagtgccaa aatgggcgca aggtttaatg ccaatgatga ttattccgct tattagtagt
     6901 ttagtcgtcg ggcttctgat gtactttgtt gtaggggttc caatcgtttg ggccacggag
     6961 gcgatgacaa gcctcttaca aggcatgcaa ggcagtatgc gctttgtttt cggagctgta
     7021 cttggagcta tggcagcatt tgactttggt ggacctgtaa ataaagtggc ctccttattc
     7081 gcagatgggc tccttcttga aggcgtcaaa gaaccagaag cagtaaaaat tcttgcttcg
     7141 atggttccgc cattcggggt gaccctttca tgggtagttt ccaaattaat taaaaagaaa
     7201 aaatacacga agtcagaaga agacaatatc aaaattgctt tcccgatggg gatttgtatg
     7261 attacagaag gtgttattcc cattgcagcg gttgacccca ttcgcgttat tatttcttgt
     7321 acacttggtg cggcagtcgg cggaggtctt agtatgactt ggggaattgg ctcaccagtt
     7381 ccatcaggcg gaatgtttat cgtcccagca atgaatgaac cactcttatt ctgtttagca
     7441 ttattaattg gtacttgtgt cacagcagcc atgttactca tcttgaaacg agaacctact
     7501 aaagaagaag aactcattgc tgaccaagga ttagaagagg aagatgaagt tgatctgtct
     7561 ggaattaaaa tttcataagg tgaggagatt ttgaaatgta tgtgtccatg aaaggtatgt
     7621 tagaacgtgc gaacaaggag cattatgcag taatggcaat taattgtttt aatctggaaa
     7681 cggctcgtgc agtcattgat gctgcacaag aacttcgtgc gccgattatc attgatttac
     7741 ttcaagatca tttgacaagt catctaggaa gtcgcttttt gacaaaaccc attataaaaa
     7801 tggcagaaga agcgagtgtt gaagtggcaa ttaatttgga tcacgggcat gatgtggcga
     7861 tagtgaagca atgcttagcg gatggttttt ctagtgtgat gatggatgcg tctagttttc
     7921 cttatgaaga aaacgttgca attacgaaaa aaatggtcga gtttgcagaa gtttatcatg
     7981 ctagtgttga ggcggaagtt ggtaatattg gtgcggtgac tggagataat tacaccaatc
     8041 aagaaatgta taccgacccc aaagtggcca tcgattttgc taaacgaaca gggattgacg
     8101 ctttagcaat ttcttatggt tcttcccatg gtgattatcc agaaggtttt acaccggctt
     8161 tccagtttga tattgtcaga gaaatcaaat ccgcgacaaa catgccgctc gttttgcacg
     8221 gaggttctgg ttgcggggcg gaaaatattc gagaatccgt tcgactgggc atcaataaaa
     8281 tcaatgttgg ctccgacttc atgaaagcac aagtaaatca aataaaaacg aatttaaaag
     8341 aaaatccggc tgttaactat gtggacttaa ttcatgaaac gataaaagcc ggcacaaaag
     8401 ctgttaaaaa ttatattcaa ctatccggtt caaccggaaa atcactttaa aaggagaaat
     8461 gaaaatatgt tagtaaatat gaaacaatta ttagaagtag ctaaggaaaa caaattcgcg
     8521 gtgggagcat ttaatgttgc agacagtaac tttttacggg tggtagtaga agaagctgaa
     8581 aaaaacaatg ctccagcaat tattgcagtg catccaacag aattagattt tacgaaagat
     8641 gactttttcc aatatgttct tgcaagaatt aaaaatagtc ctgttccatt tgttcttcat
     8701 ttggatcatg gtgacaatat gggagatgtg atgcgagcgg tacgttgtgg ttttagttca
     8761 gtgatgattg atggctcttt gcttcctttt gaagaaaata ttcgtgttac aaaggaagtt
     8821 gttgatgttt gtcataaact gggggtctca gttgaaggtg agctcgggac tatcgggaaa
     8881 accggtaaca gtattgaagg cggcgtcagt gagattatct atacaaaacc cgaagaagcg
     8941 gaagaatata ttagtcgcac gggtgtagat acgctagctg ttgcaatcgg gacagcgcac
     9001 ggaatttatc ctaaagataa ggagccaaaa ttacgtctag atatcttaaa agatataaaa
     9061 gatttagtga atattccact tgtacttcac ggtggttctg caaatccaga tgccgaaatt
     9121 gctgcagctg tcgaaattgg aattcaaaaa gtaaatattt ccagcgatta caaatacgcc
     9181 ttttataaga aatgtcgtga gattctaagt acaacagaac tttgggatgc caacgcaatc
     9241 tacccagact gtattgatgc ggcgaaagaa gtggtgaaat ataagatgga actttttgag
     9301 tctattggtc aagttgaaaa ataccaacaa gcaaaaacca cagcttggcg aagtgaacta
     9361 atctaacaaa aaaaactaag agcgcaagtt ggctcttagt ttttttgtat ctttacaagt
     9421 ggtacattca tctctattaa cttttggagc ttctggacat cgttaattcg ccaaggcttt
     9481 ctttgtgatt ccaaaatgcc ttcttcacgt aaatgtccta gaactttaga cgtgtagctt
     9541 ttagaagtat tagcatgatc agcaagtatt tgataagtta aaaattctgg aagttctact
     9601 attttttcgg agatacgtag gccaaattca atcattgtac ttaaagaata ataaatactt
     9661 tcacgtgaag tcaatttttc ttgataagcg atagtgtaaa atcttcttct agtttccgct
     9721 aattgatgaa gcatgagata atttcgcgga tcttccgtct ccatcatccc cttaaagaaa
     9781 ctgatatcaa ttttccacca tacaatatct gtaagagcaa ccatcattgt gtgttcaggt
     9841 atatcctctg tataaactgg caaaaaggga aatgctcctt tagacaaaat ataagaaaaa
     9901 tcacgcggtt tgttgtcatc aaatattagt ttcataaaac cttcttctat tatataaata
     9961 tgttttcgtt gtttattgga tgtgataatt gttttttgtg ggagccgctc ttgaatgcag
    10021 tgcttattaa aactcggatt tttcttgagc agtttaagaa tattatctat cgaagcaaat
    10081 tgatctaacg tttcttttaa atacatacca ttccccccta tgtcattagt ttcccgcaat
    10141 ataagcgcat aaaacttatt cttctagtag aatatttttg cgtaaacata agcggggaag
    10201 aataaaaaca cgaattaata actttcacaa ataatacaaa atatcgcgat aatcattaaa
    10261 aaatagaggt tattcttcta aaaaggtagt tagaaagata ctattttcac taaaatgttg
    10321 cttgaaattt ttggatagaa aagtagaggg aatgtgcttc gtcttataat agaagtatca
    10381 aaagaaactt atacaataat ttataaagtg aataaaattc aattgtgaca aaaaagtcaa
    10441 aaatagttgg ttaaagcagg aagttttgtt tttttgttgg gttcctttta aaagtgtttg
    10501 gtagtatcat cacttgtaag aagccactca tcgcattata aaactatttg ctaacaacat
    10561 aaaatagaaa tgagatgaca ataaatgcaa tccgtatttg aagatttgta tagtaaaaaa
    10621 attttggaag aagaatttgg ttatacatgc ttcttgcaaa ctttaatcga taacagaatc
    10681 ccttataaaa aaacaaggat accgagcaac atgattttac taacagagga tacaataaat
    10741 acaaaggttt att
//
LOCUS       DABQVC010000100        10674 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.100,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000100 DABQVC010000000
VERSION     DABQVC010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10674
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.100"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            27..1058
                     /locus_tag="IBJ56_001765"
     CDS             27..1058
                     /locus_tag="IBJ56_001765"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HAM3418019.1"
                     /translation="MKVSIIGATGYGGLELIRLLHQHASVDIATLHSFSAQSETLATF
                     YPHLKDLEASPLEKINSAEIIEKSDTVFIATPSGIAKDIALPYVDAGLNVIDLSGDFR
                     LKDRQLYEKWYGKSAAPIEYIAKAEYGLAEFRDKKEARFIANPGCYATATLLGIAPLV
                     KSQLIDPTSIIVDAKSGISGAGKVPSASTHFTETNENMTLYKMNSHQHIPEIMQQLTK
                     WDETIPAIQFSTSLIPITRGIFTTIYVKPKNPITQKELHTLYKSTYENAPFVRIQPEN
                     VYPTVKQVTASNYCDIGLAYNEKTNVITIVSVLDNLVKGAAGQAIQNLNIMANFAESD
                     GLRFIPVYP"
     gene            1074..2270
                     /gene="argJ"
                     /locus_tag="IBJ56_001766"
     CDS             1074..2270
                     /gene="argJ"
                     /locus_tag="IBJ56_001766"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HAM3418020.1"
                     /translation="MELVKGNIASPKGFYADGKHAGLKRKRNDIGWIYSEVPANAAAV
                     YTMNQMQAAPIFVTKDSFQSNAKLQAIIVNSGNANACTGNQGMLDALAMRAQTAEKLD
                     IPLDYVAVASTGIIGDMLPMDKINAGIEMLEKQTGNAADFEEAILTTDTFQKQISFQT
                     EIGGRKVTMSGVAKGSGMIHPNMATMLAFITTDAAIPAELLQKLLKIKVDKTFNQITV
                     DGDTSTNDMVVVMANGCAENPMLQEGTADFAKFADMFQAVTEHLAKSIARDGEGATKL
                     IEVQVNGATKTEDARMIAKKIVSSSLVKTAAFGGDGNWGRIICAIGYSGGRFAPDNIT
                     IKIGGIEILNHSSQTIFNQQALDAYLEEEHIIIDVDLHIGLESGTAWGCDLSYEYVKI
                     NACYRT"
     gene            2283..3035
                     /gene="argB"
                     /locus_tag="IBJ56_001767"
     CDS             2283..3035
                     /gene="argB"
                     /locus_tag="IBJ56_001767"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HAM3418021.1"
                     /translation="MENTIVVKLGGVASDNLTEDFFQQIIQWQAANKKIVLVHGGGHY
                     ITKMMKSLAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNAG
                     DTGLLEADFLNDANLGFVGKITKVKTDLIEQLLSENIITVIAPLGINSEYDWLNVNAD
                     TAACEVASALQAEALYLLTDVPGVKKGSEIIGEIATDEIEKLQNAGVIKGGMIPKLAS
                     AAFAAENGVGKVIITDSLNTSGTKIKNKVAIG"
     gene            3032..4192
                     /locus_tag="IBJ56_001768"
     CDS             3032..4192
                     /locus_tag="IBJ56_001768"
                     /EC_number="2.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine transaminase"
                     /protein_id="HAM3418022.1"
                     /translation="MKHVFPTYKRFPIDLVNGTGTVVTDKNGKTYLDFTSGIAVCNLG
                     HCPANVAEAVQQQLTNIWHTSNLYECALQDSVAELIADGKDRLVFFCNSGTEANEAAL
                     KLARKYTGKEKIITFEKSFHGRTFGSMSATAQAKIHQGFGGLVPGFTYVPYNDIEAFR
                     AEIDEHTAAVMLEVIQGEGGVIPANAAFLLEVQLLCKKMGVLLIIDEVQTGLGRTGTL
                     YGFEQIGLEPDIFTLAKGLGNGLPIGAMVGKANLSSAFGPGSHGSTFGGNKLALAAAK
                     EILRTMKQAGFLEEVNAKADYFRYLLEVHLEALDNVSVIRGGGFLIGIELENTAEPVV
                     TELRDKGLLILTAGANVLRILPPLTVSYAEIDQAIYLLKSVLENQLIGSEEG"
     gene            4189..5139
                     /gene="argF"
                     /locus_tag="IBJ56_001769"
     CDS             4189..5139
                     /gene="argF"
                     /locus_tag="IBJ56_001769"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HAM3418023.1"
                     /translation="MTMYAKNNTAGKDMLSLLEWNKEELTDIIKLAVAMKTNPAHYSH
                     ILSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSE
                     YIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGVKL
                     AYIGDGNNVCHSLLLAGAMVGIDIRLAMPKGYEVDETILAKAENLAKQSGGKIFVTED
                     PKLAVTDADFIYTDVWTSMGQEDENAKRLADFGEKYQVNAELVSGAKPDYHFLHCLPA
                     HREEEVTAEIIDGNHSVIYQQAGNRLHAQKALLAAILEAK"
     gene            complement(5171..5974)
                     /locus_tag="IBJ56_001770"
     CDS             complement(5171..5974)
                     /locus_tag="IBJ56_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HAM3418024.1"
                     /translation="MAKTIFYFSYRKTEELHAKAKELKKITTDYGYELTDDYQKANVI
                     ISIGGDGAFLKSVRETGFRQDCLYAGIALTEQLGQYCDFHINQLDEIIKAAIEDRWLV
                     RRYPTIYGTVNNTKAFYVLNEFNIRSSIIRTLTMDLYINDSHFETFRGDGMVISTPTG
                     STAYNKSVNGSIVDPLLPSMQVSELASINNNKFRTLGSSFILSPKRKLRIEIASEEGN
                     NEFPMIGMDSEALSIQHVHEVNLEVGDRFINIIKLPKNSFWDKVKRNFL"
     gene            6153..7166
                     /gene="sppA"
                     /locus_tag="IBJ56_001771"
     CDS             6153..7166
                     /gene="sppA"
                     /locus_tag="IBJ56_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HAM3418025.1"
                     /translation="MNAKRWIALGIVFALLIVSALAKFTSSQIASKEDSSPTFVESLF
                     ADTGELTETVIEEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRND
                     DYIQGVLLYVNSPGGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPAD
                     KIFASKETLTGSLGVIMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKI
                     MQSMIDDSYNEFVKVVAQGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALE
                     ALKKEQGLADATVIQYDTPENFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYL
                     YGE"
     gene            7186..7722
                     /locus_tag="IBJ56_001772"
     CDS             7186..7722
                     /locus_tag="IBJ56_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HAM3418026.1"
                     /translation="MANENVTFESKRQVYHYEPPIQKEEAIPKQYFAGFWIRFLAYLV
                     DLVVIAALKGIIINPIFRVSGMGMDDSFFTFYWGMTTIIFLAYFILLTKFFGQTLGKM
                     LFGLRVVKLDGEKLTWLTVLFREGAMRFVLKTIWPLYVVCAFTPNKQGIADFFESTSV
                     VHTGYLELDEKWVNGAKK"
     gene            7783..8280
                     /gene="tpx"
                     /locus_tag="IBJ56_001773"
     CDS             7783..8280
                     /gene="tpx"
                     /locus_tag="IBJ56_001773"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HAM3418027.1"
                     /translation="MTQVTFKHNPVTLVGTERKVGDKAPNFTVVNRDLEEVTLHDYDG
                     KVRLISVVPSIDTSVCSTQTRKFNEEASNLDNTVVLTISVDLPFAQKKWCAAEGLPNA
                     ITLSDHRDLSFGEAYGVVMKELRLLARSVFVVNAAGEIVYTEVVPEGSDHPNYEAAIE
                     AAKKA"
     gene            8471..9469
                     /locus_tag="IBJ56_001774"
     CDS             8471..9469
                     /locus_tag="IBJ56_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAM3418028.1"
                     /translation="MANEATQELFQVLDNTAIILQNELEISYLEAVYETGENLFQKEV
                     LQKEELSSEKQLKLQASYESIELENFSNEEIRKGLQLALLKGMKHGIQVNHQMTPDSI
                     GFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI
                     SLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEG
                     HSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPET
                     LFKSEQARKSILILQKADVDVKPPKEVLLANLSSLTDPSVTAPILAEIENWFKRKR"
     gene            9493..>10674
                     /locus_tag="IBJ56_001775"
     CDS             9493..>10674
                     /locus_tag="IBJ56_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HAM3418029.1"
                     /translation="MEKTIAINAGSSSLKFQLYDMPSERVITAGIVERIGLKDSIFTI
                     TVDGEKIKEIIDIPDHEIAVQMLLEKLINHKVIGSYDEITGIGHRVVHGGERFPESVY
                     IDDQVIKDIEALSELAPLHNPANVTGIKAFRKILPDVVSVAVFDTAFHQTMPPASYLY
                     SLPYSYYEDYGIRKYGFHGTSHKYVSERAAELLGRPVEELRLLTCHLGNGASIAAIEG
                     GKSMDTSMGFTPLAGVSMGTRSGNIDPALIPFIMEKTGKTAEQVLDVLNKESGMLGVS
                     GISSDLRDLEDEAAKGNDRAELALQVFVDRIHKYIGSYAARMNGVDAIIFTAGIGENS
                     SYIREKVLRGLEFMGVYWDPALNQVRGEERFLNYPHSPVKVIIIPTNEELMIARDVET
                     IK"
BASE COUNT         3528 a         1836 c         2292 g         3018 t
ORIGIN      
        1 tttaataatt aacgggaggg gttaggatga aagtttccat tattggtgca acaggatacg
       61 gagggcttga gctaattcgc ttgcttcatc aacatgcttc ggtagacata gcgacgttac
      121 atagtttttc cgctcaatca gaaacacttg caacctttta tcctcattta aaagatttag
      181 aagctagccc cttagagaaa ataaattcag cagaaatcat cgaaaaaagt gataccgttt
      241 ttattgccac gccttctgga atcgcgaaag atattgctct cccatatgta gatgcaggtt
      301 tgaatgtcat tgatctatcc ggggactttc gattaaaaga caggcagctt tacgaaaaat
      361 ggtacggaaa aagcgcggct ccaatcgagt atatcgctaa ggcggaatat ggtttagcag
      421 aattccgtga taagaaagaa gctagattca ttgctaatcc tggatgttat gcaactgcaa
      481 ctttgttagg catagcacct ctagtgaaaa gccagttgat tgatccaaca tcgattatcg
      541 tagacgctaa atcaggtatt tccggcgcag gaaaagtgcc ctctgcaagt actcatttta
      601 cagaaaccaa tgaaaacatg acactttata aaatgaattc tcatcaacat attccagaaa
      661 ttatgcaaca attaactaaa tgggatgaga ctatcccagc aattcaattt tctacttcgt
      721 taattcccat cacaagagga atcttcacaa ccatctacgt taaacccaaa aatcctatca
      781 cccaaaaaga gttacatacg ctttacaaat ccacctacga gaatgctcca tttgtccgaa
      841 tccaaccaga aaatgtatat ccgactgtca aacaagtgac agcatcgaat tactgtgata
      901 taggtcttgc ttataatgaa aaaacgaatg tgattactat cgtttctgtg cttgataatt
      961 tagttaaagg ggcggctggt caggccattc aaaatttaaa cataatggcg aattttgctg
     1021 aaagtgacgg attaaggttt attccggtgt atccgtgaaa ggggaaaaat aaaatggaac
     1081 ttgtcaaagg aaatatcgct tcaccaaaag gattttatgc tgacggaaaa catgcagggc
     1141 ttaaaagaaa acgaaatgat attggttgga tttattcaga agttccagca aatgcagccg
     1201 ctgtttatac gatgaatcaa atgcaagccg caccaatttt tgtaacgaaa gattcttttc
     1261 aaagtaatgc gaagttacaa gcaattattg tgaatagtgg gaatgccaat gcatgtacag
     1321 ggaatcaagg tatgttagat gcacttgcga tgcgggctca aacggcagaa aagttagata
     1381 ttccacttga ttacgtagcc gttgcttcca cgggaattat tggcgatatg ctaccgatgg
     1441 acaaaatcaa cgcgggaata gaaatgctag aaaagcaaac tggaaatgcg gccgattttg
     1501 aagaagcgat tttaacaaca gatacgtttc aaaaacaaat cagttttcaa acagaaattg
     1561 gtggtagaaa ggtaacgatg tcaggtgtag cgaagggatc aggaatgatt catccaaata
     1621 tggcgacaat gcttgctttt attacaacag atgccgcaat cccggctgaa ttattgcaaa
     1681 aattactaaa aataaaagta gacaaaactt tcaatcaaat aacggtagat ggcgatactt
     1741 ctaccaacga tatggtggta gtcatggcga atggctgtgc agaaaacccg atgcttcagg
     1801 aagggacagc ggattttgcg aaatttgcgg atatgtttca agcggtaacg gagcaccttg
     1861 ctaaaagcat cgcgcgagac ggcgagggag cgacaaaact aatcgaggta caagttaatg
     1921 gcgctacaaa aacagaagat gcaagaatga ttgctaaaaa aattgtttcc tctagtctcg
     1981 tgaagacggc agcttttggt ggagatggga actggggacg tattatttgc gcgattggct
     2041 attcaggtgg ccggtttgcg ccagataata ttacgattaa aattggcggg attgaaattc
     2101 tgaatcatag cagccaaacc atttttaatc aacaggcgtt agatgcctat ttagaagaag
     2161 agcatatcat tatcgacgtt gatcttcata tcggacttga gtcaggaaca gcatggggtt
     2221 gcgacttgag ttatgaatac gtcaaaatta acgcatgcta ccggacgtaa ggaggaatca
     2281 ggatggagaa tacgatagtc gtaaaactag gcggtgtcgc aagtgacaat ttaacagaag
     2341 attttttcca acaaataata caatggcaag ctgccaataa aaaaattgta ctcgttcatg
     2401 gtggtgggca ttatattaca aaaatgatga aatctcttgc tattcctgtc gaaacaaaaa
     2461 atggtctacg tgtcactaat aaagcgactc ttgaagtgac aaaaatggtt ttaattggcc
     2521 aagtccaacc agctattacc actgcttttc aaaaacgtaa tatttcggtt atcggtttaa
     2581 atgcgggtga tacagggtta ctagaagcag attttttgaa cgacgcgaat ttgggatttg
     2641 tcggaaaaat aacgaaagta aagacagatt taatcgaaca attacttagc gaaaatatta
     2701 tcactgtgat tgcgccgctt ggtataaaca gtgaatacga ttggctaaat gtcaatgcag
     2761 atacagccgc ctgtgaagta gcaagcgcac ttcaagcaga agcactctat ttactaacag
     2821 atgtacctgg tgtgaaaaaa ggttcagaaa ttattggcga aatagccaca gatgaaatag
     2881 aaaagctgca aaatgccggc gtaataaaag gtggaatgat tcctaaatta gctagcgctg
     2941 cctttgctgc cgaaaacggt gtcggaaaag ttattattac agattccctt aacactagcg
     3001 gaacaaaaat aaaaaacaag gtggcgattg gatgaaacat gtttttccaa catacaaaag
     3061 gtttcctatt gatttagtta acggtacggg cacggttgta acagataaaa atggtaaaac
     3121 atatctcgat ttcactagcg gtatcgcagt ttgtaacctt ggtcattgtc cagcaaatgt
     3181 tgcagaagca gtacaacaac aactaacgaa tatttggcac acatcgaatt tatatgaatg
     3241 tgctttgcaa gatagtgtcg cagaattaat tgcagatggt aaagacagat tagttttctt
     3301 ttgtaatagc ggaacagagg caaatgaagc agcgctcaaa ttagctagaa aatataccgg
     3361 gaaagaaaaa ataattacct ttgaaaaatc tttccacgga cgtacttttg gttcgatgtc
     3421 agctacagcc caagctaaaa ttcatcaagg gttcggggga cttgttcctg gcttcactta
     3481 cgtcccttat aatgacatcg aggctttccg agcagaaatc gatgaacata cagcagcagt
     3541 catgttagaa gtaattcaag gggaaggtgg cgtcatccca gcaaatgcag cctttctttt
     3601 agaggttcaa ttgctttgca aaaaaatggg ggtattatta attattgatg aagtgcagac
     3661 tgggcttggg cgaacgggga cgctttatgg atttgagcag attggtttag aaccagatat
     3721 tttcacttta gcaaaagggc ttggaaatgg cttgccgatt ggagcgatgg tcggaaaagc
     3781 gaatctaagt agtgcttttg ggccaggaag tcatggctct acttttggag gaaataaatt
     3841 ggcccttgcg gcggctaaag agatattacg aacaatgaaa caagcgggat ttttagaaga
     3901 ggtaaatgcc aaagcagact attttagata tttgttagaa gtgcatttag aggcgttgga
     3961 taatgtttct gtcattcgtg gtggaggatt tctgataggt atagaacttg aaaataccgc
     4021 agaaccagtt gtaacggaac ttagagataa aggattgcta atactaactg cgggggctaa
     4081 tgtgctacga atcttaccac ctttaaccgt cagttatgca gaaatcgatc aagccatata
     4141 tttattgaaa agtgttttgg aaaaccaatt gattgggagt gaagagggat gacaatgtat
     4201 gcgaaaaata atacagctgg gaaagatatg ctcagtttgc ttgaatggaa taaagaagaa
     4261 ttgacagata ttattaaatt agctgttgca atgaaaacga atccagctca ttatagtcat
     4321 attttaagcg ggaaaatttt aggaatgatc tttgacaagc cttctactag aacacgggtt
     4381 tcttttgaag ccgggattct gcaattaggt ggacaagcga tagtgatgag ttcaaaggaa
     4441 ttgcaaatcg ggcgtggtga accgattaaa gatacggcgc atgtgatgtc agaatatatt
     4501 gatgcaatta tgattcggac atttagtcat gaaaaagtag aagaattggc gtatcatgca
     4561 gaaattccaa ttattaatgg cttaaccgac ctgcatcatc catgtcaggc gttagcggat
     4621 ttaatgacta tttatgaatg gaaagatcag ttggaaggtg tcaaactagc ttatattggt
     4681 gatggtaaca atgtatgtca ttcattgctt ttagccggcg ctatggtcgg gatagatatt
     4741 cgccttgcga tgccaaaagg gtatgaggtc gacgaaacaa ttcttgcaaa ggcagaaaat
     4801 ctggcgaagc aaagtggtgg caagattttc gttacagaag atccaaaact tgcagtgact
     4861 gatgcggact ttatttatac ggatgtttgg acaagtatgg ggcaagaaga tgaaaatgcg
     4921 aaacgtttgg cggattttgg cgaaaaatat caagtaaatg cagaattagt tagtggtgcc
     4981 aagcctgatt accacttctt acattgctta ccagcacatc gggaagaaga agtgacagct
     5041 gaaatcattg atggcaatca ctcggtcatt tatcaacaag cgggaaatcg gcttcatgca
     5101 caaaaagcat tactagcagc catcttggaa gcaaaataaa aaagtctggc gtaagtgcca
     5161 gactttttta ttataagaaa ttacgtttca ctttatccca gaaagaattt ttaggcagtt
     5221 tgataatatt gataaaacga tcgcctactt ctaaattaac ttcatgcacg tgttggatac
     5281 taagtgcttc gctatccatt ccaatcatcg ggaattcgtt atttccttct tcagacgcaa
     5341 tttcaatacg tagtttgcgt tttggactaa gaatgaacga agaaccaagt gtgcggaatt
     5401 tgttattgtt aatagaagcc agttcactta cttgcataga tggaagaagt gggtccacga
     5461 tagaaccgtt cactgattta ttataagcgg tacttcctgt tggtgtggaa ataaccatgc
     5521 catctccgcg gaaagtttcg aagtgagaat cattaatata aagatccatc gtaagcgttc
     5581 taataataga agaacgaatg ttaaattcat ttaatacata aaaagctttg gtgttattca
     5641 ctgttccata gatagttgga taacgtctta ctaaccaacg atcttcaatg gctgccttga
     5701 tgatttcatc caattgatta atatggaagt cacagtattg acctaattgc tctgttagcg
     5761 caatccctgc atataaacaa tcttgacgga agccagtttc tcttacagat ttaagaaaag
     5821 caccatcacc accaatgctg ataataacgt ttgctttttg atagtcatcc gttaattcat
     5881 atccataatc cgtcgtaatt ttcttcaatt cttttgcttt tgcatgtagt tcttctgttt
     5941 ttcgatagga aaaataaaaa atagtttttg ccatgttagt tgtccctcca gaatccaatt
     6001 ttaatcaaca aacttattat aacatgactt cagagcaatt tctttcatca taagtaaaaa
     6061 agtgaaatgg gacacaattt aagagaaaga ttgtacaaaa taaaagaggc tggtattatt
     6121 acattatcta atcagaaaaa ggggagaaat aaatgaacgc taaaagatgg attgcactag
     6181 ggattgtttt tgcacttttg atagtcagtg cgttagcaaa gtttacatca agtcaaatcg
     6241 cttcaaagga agatagtagt ccgacatttg tcgaaagcct attcgcagat accggcgaac
     6301 taaccgaaac agtaattgaa gaaggcggga atgatacaat tgctgtatta tctgtagatg
     6361 gcactattca agatacggga gattcaggtt ccttatttag tgaggctggc tacaatcatt
     6421 ctttttttat gcaacaatta gaacaagtga gaaatgatga ctatatccaa ggcgtactgc
     6481 tgtatgttaa ttcaccaggt ggcggtgtca tggaatccgc gcaaattcgt gataaaattt
     6541 tacaaattca aaaagaacgc aatattccat tctatgtttc catggggagt atggcagcat
     6601 caggtggata ttatatttcc gcgccagccg acaaaatttt tgcaagtaaa gaaacattga
     6661 ccggctcgct tggcgtcatt atgcaagggt atgactatag tgaactcatg aaaaaattag
     6721 gtgtttcaga taataccatt aaaagtggcg aatataaaga cattatgagc gggacaagac
     6781 caatgacgga agacgagaag aagattatgc agtcaatgat tgatgattct tataatgagt
     6841 tcgttaaagt agttgcacag ggccgtggaa tgactgtaga acaagtgcgt aaaattgcag
     6901 atggtcgcat atacgacggc cgccaagcaa aagagaacgg attgattgat gaatttggtt
     6961 atcaagaaga tgccctagaa gctttgaaaa aagaacaagg gttagctgat gcgacagtca
     7021 ttcaatatga tacaccagaa aactttagct cgctattctc tgtagctgca caaaaaatct
     7081 ctggtcaaaa tgcagatatt tcccaactaa tcaaattaac tggcacactt aaagcgccaa
     7141 gaatgatgta tttatatgga gaataatgtg agaggagagg cgcacatggc taatgaaaat
     7201 gttacttttg aaagtaaacg ccaagtctat cattatgaac caccaattca gaaagaagaa
     7261 gccattccta aacagtactt tgctggcttt tggatccggt ttttagctta tttagtcgat
     7321 ttagttgtca tcgcagcctt gaagggaatc attattaatc cgattttccg cgtttctgga
     7381 atggggatgg atgacagttt cttcacattt tattggggaa tgacaacgat tatcttttta
     7441 gcttacttta ttctgcttac taagtttttc ggacaaacgc ttggaaaaat gttatttggt
     7501 cttcgcgtag tgaaacttga tggcgaaaaa ttaacttggt taaccgtttt atttcgagaa
     7561 ggtgcgatgc gttttgtctt aaaaacaatt tggccgttat atgtggtttg tgcctttaca
     7621 ccaaacaaac aaggcattgc ggactttttt gaatccacat ctgtcgtcca cacgggctac
     7681 ttagaactag atgaaaaatg ggtaaatgga gcaaaaaaat agcttatagc aaacttcttc
     7741 tttaaaatgg aatagaagcg tccattaaag gaggaagaaa aaatgactca agtaacattt
     7801 aaacataatc cagttacact cgtaggtacc gaaagaaaag ttggcgacaa agcgccgaac
     7861 ttcacagtgg tgaatagaga tttagaagaa gtaacattgc acgattatga cgggaaagtg
     7921 agacttatca gcgttgttcc ttccattgat acaagtgttt gttccacaca aacgcgtaaa
     7981 tttaatgaag aagcaagcaa tttagataat acagttgtct taactatctc cgttgattta
     8041 ccatttgctc aaaagaaatg gtgtgccgca gaaggtttac caaatgcgat tacattatct
     8101 gatcaccgcg atctttcttt tggcgaagca tacggtgtag tcatgaaaga acttcgctta
     8161 ctagctcgtt ctgtttttgt ggtaaatgca gcaggggaaa tcgtctacac ggaagtagtt
     8221 ccagaaggta gcgatcatcc gaattatgaa gctgcaattg aagctgcgaa aaaagcctaa
     8281 atcgtaaaag ccttccttta gttaggaggg cttttttctg tattactact aaaaataaac
     8341 tgtactaatg ataatgaact atttccaatg agaatttcat cttttactac ataaaatcct
     8401 ttcacattct ttagaaatac tgtataatgt ttggtggtgt tagtaatgat gaaaattcga
     8461 ggtgttactt ttggcaaatg aagcaacgca agaattattt caagtgcttg ataatacagc
     8521 tattatcttg caaaatgaac ttgaaataag ctatttggaa gcggtttatg aaacaggaga
     8581 aaatctgttt caaaaagaag ttttacaaaa agaagagttg tcttctgaaa aacaattgaa
     8641 attacaagcg tcttacgaaa gtatcgaact tgagaatttc tcgaatgaag aaatccgcaa
     8701 aggtcttcaa ttagcactac taaaaggcat gaaacacggt attcaagtga accaccaaat
     8761 gacgccagat tccattggtt tcattgtggc atatttgctt gaaaaagtga ttcaaaagaa
     8821 gaaaaatgtt tctatcttgg atccagcctg tggcactgca aaccttttaa caacagtgat
     8881 taatcagcta gaattaaaag gtgatgtaga cgttcatgca agtggtgtag atgtagatga
     8941 tttgcttatt tcgcttgcac tagtaggagc ggatttacag cgacaaaaaa tgacattgct
     9001 gcatcaagat gggctggcta atttattagt tgatcccgta gatgtcgtaa ttagtgattt
     9061 acctgttggg tattatccgg atgacgaaaa tgcaaaaaca tttgaacttt gccgtgaaga
     9121 agggcattca tttgctcatt tcttgtttat agaacaagga atgcgctaca caaagccagg
     9181 aggatattta ttcttcttgg tacctgacgc aatgtttggg actagtgact ttgctaaggt
     9241 ggacaagttt atcaagaaaa acggtcatat tgagggaatt attaaattgc ctgaaacact
     9301 gtttaagtct gaacaagcac gaaaaagcat cttgatttta caaaaagcgg acgtagatgt
     9361 aaagccgcca aaagaagttt tattggccaa tctctcttcg ctaacagatc cgagcgtaac
     9421 tgcaccgatt ttagctgaaa tagagaactg gttcaaaagg aaacgataat ggaaggaatt
     9481 gacaaaaaca aaatggaaaa aacgattgca attaacgccg gaagttcttc actgaaattc
     9541 caattatatg atatgccatc tgaacgtgtt atcacagctg ggattgtaga aagaattggt
     9601 ttgaaagatt ctatttttac aattactgta gacggagaaa aaatcaaaga aattattgat
     9661 attcctgacc atgaaattgc tgttcaaatg ctacttgaaa aattaattaa ccacaaagtt
     9721 atcggttctt acgatgaaat cactggaatt ggtcaccgcg ttgttcacgg tggagaaaga
     9781 ttccctgaat ccgtttatat tgatgaccaa gtaattaaag atattgaagc tctatctgaa
     9841 cttgcgccgc ttcataaccc agcgaacgtt actggtatta aagcattccg caagatttta
     9901 ccagatgttg tttcagtggc tgttttcgat acagctttcc atcaaacaat gcctccagca
     9961 agttatctat acagtctgcc atacagctac tatgaagact atggtatccg taaatacggt
    10021 ttccacggta caagtcacaa atatgtatcc gaacgcgctg cagaactttt aggacgtcct
    10081 gtagaagaat tacgtttact aacttgtcac cttggtaatg gtgctagtat cgctgcaatc
    10141 gaaggcggaa aatcaatgga tacttccatg ggattcacac cactagctgg tgtttctatg
    10201 ggaactcgtt ctggtaacat tgaccctgcg cttattcctt tcatcatgga aaaaactggc
    10261 aaaactgcag aacaagtact tgatgtgtta aacaaagaat ctggtatgct tggcgtatct
    10321 ggtatttcaa gcgatcttcg tgatttagaa gatgaagcag caaaaggaaa cgaccgcgca
    10381 gaacttgcac ttcaagtttt cgttgaccgt atccataaat acattggttc ttatgcagct
    10441 cgtatgaacg gtgtagatgc cattatcttc acagctggaa tcggtgaaaa tagttcatac
    10501 atccgtgaaa aagtacttcg tggacttgaa ttcatgggcg tatactggga tccagcactt
    10561 aaccaagtgc gcggagaaga aagattcctt aactatccgc actccccggt aaaagttatc
    10621 atcattccta caaacgaaga attaatgatt gctcgtgatg tagaaacaat taaa
//
LOCUS       DABQVC010000101        10486 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.101,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000101 DABQVC010000000
VERSION     DABQVC010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10486
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.101"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..573
                     /locus_tag="IBJ56_001776"
     CDS             <1..573
                     /locus_tag="IBJ56_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HAM3418030.1"
                     /translation="LKLSGFSELKFLLHSDKTETKPLSKDYSSTFLEKIRLGIEQLPK
                     KEIEQVATRIAYAPKIYIACLGMTKTLGEYFSKSLVTSKKNVVFTYDSFIIDILPQIV
                     ERDDLIIIISESGGTENTLSLAEHLKYNLSNVIAIVNNPNAQISQYVETIIYASSEEF
                     DEDSFKHHHAPLLIVIDLILNIFEQQKKLI"
     gene            656..1024
                     /locus_tag="IBJ56_001777"
     CDS             656..1024
                     /locus_tag="IBJ56_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiR family transcriptional regulator"
                     /protein_id="HAM3418031.1"
                     /translation="MKLDGVCKINSALGMEYQFGEFYIDRDYLVFDQDFSLGMKKRQT
                     FPVAKLGHIALVREEEEIMLTFSCDNIEFEINGNSHDNLREFRDLLQNKGTNSAEIQK
                     AESKKKARYTTHHYHNFAKS"
     gene            1038..1649
                     /locus_tag="IBJ56_001778"
     CDS             1038..1649
                     /locus_tag="IBJ56_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HAM3418032.1"
                     /translation="MYKAIIFDVDGTILDTERAVLHSLQAVLAEEGLSYELDELRFVL
                     GITGAAAVEQLNILDPEKVLDKWIEREATFIEEVEVFEGIHKVLHAIPESGVVTSKNA
                     LEMEKGFYPFNIQDHFQAIVCASDTENHKPHPDPLLKGLEILGREPHEVLYVGDSSYD
                     MKCAHAAGAHFGLALWGAKTTDGFEKAELVFEKPEDILAYVSK"
     gene            complement(1692..2096)
                     /locus_tag="IBJ56_001779"
     CDS             complement(1692..2096)
                     /locus_tag="IBJ56_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HAM3418033.1"
                     /translation="MSTLENSVIFDKGELITNDYFTGNAYLKMLVPEDTVYNCPIGNV
                     TFEPGARNNWHKHDGGQILLVTGGTGYYQEEGKPAQLLREGDVVTIPKDVKHWHGATK
                     DSWFVHLAISTNVELGGTTWLEPVSNEHYNNL"
     gene            complement(2096..2551)
                     /locus_tag="IBJ56_001780"
     CDS             complement(2096..2551)
                     /locus_tag="IBJ56_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3418034.1"
                     /translation="MTKNNISFYVVDASEELTMNIKEASEKSGVSADTIRYYERIGLI
                     PPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELL
                     KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERSNS"
     gene            complement(2636..3517)
                     /locus_tag="IBJ56_001781"
     CDS             complement(2636..3517)
                     /locus_tag="IBJ56_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PucR family transcriptional regulator"
                     /protein_id="HAM3418035.1"
                     /translation="MHIKILKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLS
                     EEEAMLLHTLFPEPLPTFPKESTQFWFDLLFGNKELAMTNEKETYRITQFHIKTTTTK
                     SMLQEWQKALLSFFSPEAELIMFSTNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQ
                     STFFMGLFHPLNDRLRGLFAEERAIFNHNNREVVQTVASESLKVIALRMKESLITNEL
                     NDLFHQDDTWIPLIHTLFKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDG
                     LLLAYLSTLQTNNSNHE"
     gene            3687..4136
                     /locus_tag="IBJ56_001782"
     CDS             3687..4136
                     /locus_tag="IBJ56_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3418036.1"
                     /translation="MADRQESLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLY
                     KEDGISQESMAKRFMVDKASVTRHIKRLEELGMIRREIDAKDRRIQRIFVTETGFQMR
                     DLIEEVTAEWSALLTANFSEKEKDDLMHLIGRLSDNAIIAVEGGESE"
     gene            4133..5485
                     /locus_tag="IBJ56_001783"
     CDS             4133..5485
                     /locus_tag="IBJ56_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HAM3418037.1"
                     /translation="MKEQSKRLGEDSIPSLMARLSIPAFIGMFVMGMYNIVDTIFVSY
                     GVGPSGVAALSIAFPVQMILMAMAAMFGIGGASIISRSLGAGEQKQADKVFHQVIWLV
                     LISSIFIAIVTFIFLDPLITLFGAPADIHDIASDFLSLILLGAVFQTFAMAMNNIVRS
                     EGNAKTAMLTMIISAILNMILNPIFIMGFGMGVRGSALATVIAQAVGAIWLLIYFLSG
                     KSTLSLKGFSFRMDFPLIRRIMAIGFPSFIMMSAGSIVTVAVNWMLNIYGGTMAIAVY
                     GIANRIASFVIMPINGVTQGMQPIVGFNYGSRQFERVMKAVKVSMIAATVMSLIAWGS
                     VEIFPGMLVRIFSNDPELIAQGTNAVRFMLLAAPTIGFQIVCGGLYQALGRARISFII
                     SLMRQIICLVPLLLILPQFFGLDGIWYAFPLADLGAFTVCLVIMSKTWRRIFKNPEIV
                     "
     gene            5543..5986
                     /locus_tag="IBJ56_001784"
     CDS             5543..5986
                     /locus_tag="IBJ56_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HAM3418038.1"
                     /translation="MAKMYPYLAFENAKEALGYYEEVFGATNISRLPVSEEQSEMFGL
                     AKENLENTTVHGGFTVLGANLFCSDSFGKEVKPSNQISIMLDSNSEDPAAVADADAFF
                     EKVSSSGRVTVTLPFEEQFWGGKMGQFVDEYGISWMIHTQPYSKL"
     gene            complement(6006..6467)
                     /locus_tag="IBJ56_001785"
     CDS             complement(6006..6467)
                     /locus_tag="IBJ56_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418039.1"
                     /translation="MEIKQIKAKDTQDIRHRVLRPEQPEENAIYPNDDMEGTFHLGAF
                     EKDVLLGIASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLADGEAKIWKRGA
                     DIIWCNARIVAVGFYEKHGYRKVGKSFVIPGIGEHYLMKKVNPNKKVDQDN"
     gene            complement(6521..7255)
                     /locus_tag="IBJ56_001786"
     CDS             complement(6521..7255)
                     /locus_tag="IBJ56_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3418040.1"
                     /translation="MEPLFSIGEMAKKSQLSIQRLRYYDKIGLLVPAFTDPTSGYRYY
                     KTAQEEQLNLIQALQYMGFSLQELKQYLDKNTSESLPDLLIKYQQKLMDEEARIARKK
                     WLIDRYQGLLKRETDSTKPLTAVRLLLTEPLLTPVHADILNDPAFHQEVQKTVSRLGL
                     SKSYQQFPGYCILDGQTYLFIELDHSIGAPGERRLLSSERQAFVTPQNWETPPENENY
                     LLQETVAWINQELIRGYSYETKLTFE"
     gene            7335..8054
                     /locus_tag="IBJ56_001787"
     CDS             7335..8054
                     /locus_tag="IBJ56_001787"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HAM3418041.1"
                     /translation="MKIIVEKDYENMSKTTMQLLLGKMYQDKLVHLAITAGSTPKRMY
                     ELIVEEMKEKAPLTNVSYYNFDEIPIGDEKYGVTIANLKAMYFDPAGIPEEQIHMLDT
                     KNYTDHEAHLKAVGGLDAILIGIGEDGHFCGNLPGVTKFGDETRLVSVQSRPDMFDIL
                     LGEVGGDVEKVPEYYVTMGPKSVMHAKEVILFANGKKKAAIIKKALQGPVTEDIPSSI
                     FQLHPNFTVVLDEEAASELNI"
     gene            complement(8096..9673)
                     /locus_tag="IBJ56_001788"
     CDS             complement(8096..9673)
                     /locus_tag="IBJ56_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl--CoA ligase"
                     /protein_id="HAM3418042.1"
                     /translation="MNSENLIAPELYNITDEIAKFSSEKTALIWKNEHNETKTWSYRH
                     LLEQANKFANVVKDAGIKKGDHVIVMTPRLLETYAIYMGLWKAGAIIIPASELLKAHD
                     LEYRIHHANVKAIVSYNGMTAEFDKIESIPSVSKKIIVGEKLSGWDHYETLMEAASTE
                     FERVETSRDDACLLAFTSGTTGNPKGVVHIHGWGYAHIRIAADHWLDIHEDDIVWATA
                     GPGWQKWVWSPFLSVLGKGATGFIYNGRFIPEKQLHLLEEEKINVLCCTPTEYRLMAK
                     VNNLREHDLSSLRSAVSAGEPLNREVIQVFQDNFDIKVRDGYGQTESTLLIGTLVDTP
                     IRPGSMGKPIMPEYMAIIDAEGNPVGVGEIGDIAMRRDFPALFKEYYKEPERLQKAIR
                     GDYFVSGDRAIRDEDNYYWFQGRNDDIIISSGYTIGPFEVEDALTHHPAVKEVAVVAS
                     PDEIRGTVVKAFIVLKDGYEGTEDLVHELQTFTKEQTAPYKYPRRIEFVEALPKTDSG
                     KIRRVELRDAEFASVHG"
     gene            9868..10338
                     /locus_tag="IBJ56_001789"
     CDS             9868..10338
                     /locus_tag="IBJ56_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HAM3418043.1"
                     /translation="MERAFFMQQALEEAEKARDIGEVPIGAVVVLDGEIIGRAHNLRE
                     TSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCSGAILLSRIEKVYYGAK
                     DPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSEMLKSFFQDLRKRNKLNRS"
BASE COUNT         3168 a         1999 c         2173 g         3146 t
ORIGIN      
        1 ttaaagcttt ccggtttttc tgagctgaaa tttttacttc actcggataa aacagaaaca
       61 aaaccccttt caaaagacta ttcatctaca tttttagaaa aaattcgttt aggaattgag
      121 caacttccaa agaaagaaat tgagcaagtc gcgacaagaa ttgcgtatgc acctaaaatc
      181 tatattgctt gtctaggcat gacgaaaaca ttaggagaat atttttccaa aagtcttgtt
      241 acatcgaaaa agaatgtagt tttcacctat gattcattta ttatcgatat tttgccacaa
      301 attgttgaaa gagatgattt gattattatt atttctgaaa gcggtggcac cgaaaacacc
      361 ctttcgctcg cggaacattt aaaatataat ttatcgaatg tcattgcgat tgtgaataat
      421 cccaatgccc agatttccca atatgtggag acgattattt atgcttccag tgaggagttt
      481 gatgaagatt catttaaaca tcatcacgcc ccactgttaa ttgtgattga cttgattcta
      541 aatatttttg aacagcaaaa aaaacttatt taaaatattt ttatgaaatt gcttgacatg
      601 aaacccattt catcatttaa aactaatata taaggcaatg aaggaggcga atgatatgaa
      661 attagatggg gtatgcaaga ttaattcagc acttggaatg gagtatcaat tcggagagtt
      721 ttacatcgat agagactatc ttgtttttga ccaagatttt agtttgggta tgaaaaaaag
      781 acaaacgttt ccagttgcaa aattagggca tattgcgcta gttcgagaag aagaggaaat
      841 catgctaaca tttagctgcg ataatattga attcgaaata aatggaaatt cccatgataa
      901 tttgcgcgaa tttcgagatt tacttcaaaa taaaggcacc aacagcgcag aaatccaaaa
      961 agcggaaagt aagaaaaaag caagatatac aacgcaccat tatcacaact tcgctaaatc
     1021 ttgaaggagg aaattatatg tataaagcaa taatttttga cgtagatgga acaattctag
     1081 acacggagag agctgttttg cattctcttc aagcggtttt agccgaagaa ggattaagtt
     1141 atgaactgga cgaattacga tttgtccttg gaattaccgg agcagctgcg gtggaacaat
     1201 taaacattct ggatccagag aaagtattgg ataaatggat tgaacgagaa gcaactttca
     1261 ttgaagaagt agaggtgttc gaaggcattc ataaagtact gcatgccatt ccagaaagcg
     1321 gtgttgtcac ttctaaaaac gcgttagaaa tggaaaaagg tttctatccg tttaatattc
     1381 aggatcattt tcaagcgatt gtttgcgcaa gtgataccga aaaccataaa cctcacccag
     1441 atccactgct gaaagggtta gaaattcttg gaagagagcc acatgaagtg ctttatgttg
     1501 gtgattcttc gtacgatatg aaatgtgccc atgcggccgg agctcatttt ggcttagcac
     1561 tttggggcgc gaagacaaca gatggctttg aaaaagcaga acttgtcttc gaaaaaccag
     1621 aagatatttt agcttatgta agtaaataag taaaacccgc caaccttgaa tgaaggctag
     1681 cgggtttttt gttataaatt attgtaatgc tcgttggaaa caggttctaa ccaggtcgtt
     1741 ccgcctaatt ccacatttgt cgaaatggct aagtggacaa accagctatc tttcgtagcg
     1801 ccgtgccaat gtttcacgtc tttagggatt gttaccacgt cgccctctct gagcaactgg
     1861 gcaggttttc cttcttcttg atagtagcca gttccgcctg tcacaagtag gatttgtccg
     1921 ccatcatgtt tatgccagtt gtttctagct cccggttcaa acgtaacgtt cccaatcgga
     1981 caattgtaaa cagtgtcttc agggacaagc atttttaaat aagcattacc ggtaaagtag
     2041 tcattagtaa tcagttcccc tttatcaaaa ataacgctgt tttcaagtgt actcattatg
     2101 aattactcct ttcaacatta aaatctttta gttcttcttg agccggaatg aggtgggtat
     2161 cgtaattgtc tattttgaag tcaagtcgat cgagcgcttc ttgcataaca tcaatgcgat
     2221 ttttcagctc tatgcgttgc tttttcagca attcggcgcg agcttccagc gtgtgttcgc
     2281 cttctctgaa aagtgccaag taatcaatta aggcttcaat agacaaacca gctcggcgca
     2341 tttggcgagt aaataaaatc catcgtaggt cttctgcgcc aaatttacga accccacttt
     2401 cattacggtg gatgggtgga attaaaccaa tgcgttcata gtagcgaatt gtatcggcag
     2461 aaacgccact tttttcacta gcttctttga tattcatggt taattcttcc gaagcatcta
     2521 ctacataaaa actaatatta tttttggtca tgactattct cctttactga ttttctataa
     2581 tgattgtatt ccttgaagtg gactttaagt caagcgaaaa agcaaccatg atcatttatt
     2641 catgattgct attatttgtt tgaagtgtag atagataagc taagagcaac ccatccatct
     2701 tgcggagcga taagtttgtt tgctcataaa atttatccaa acgatattga atggtatttc
     2761 ggtgcataaa aagctcttta gccgtgagac tgatgtttcc ttggttttta aataatgtgt
     2821 gaatcagcgg aatccaagta tcatcttgat ggaaaaggtc gttgagttca ttcgtgatta
     2881 aactttcctt cattcgaagc gcgataactt ttaaactttc ggaagccacg gtctgaacta
     2941 cctcacgatt attatggttg aaaatggcac gttcttctgc aaataaacca cgcaatcgat
     3001 catttaacgg atggaaaaga cccatgaaaa atgtagattg tatatagaaa tcattttcaa
     3061 gcgtaccggc aacggcgatt agttcctctt cgccaagcag cgaccccgtt gatttttcaa
     3121 taataacgcc atagttagtc gaaaacataa ttaactcagc ttctggactg aaaaaactca
     3181 gcaaagcctt ttgccactct tgtaacatgc ttttagttgt agttgtctta atatggaact
     3241 gcgtaatgcg atatgtttct ttctcatttg tcatcgccaa ttccttgttt ccaaacaata
     3301 aatcgaacca aaattgggtg gattctttag gaaatgttgg taatggttct ggaaatagcg
     3361 tatgtaataa catcgcttct tcttctgaaa gattgctttt aggaatagta aaataatacg
     3421 gttcttcgaa aaaagaaatc gtatctgaac tggattttat tggatttttt gaaacgacta
     3481 tattgggata tctatttttt aatattttaa tatgcacagt ggatagcacc ccttctctat
     3541 tctttatttt tacaaaagaa agataggaag tcaaattatt gcccgggaaa taaaaaggtt
     3601 gcgcagtcaa ctaaaatcct gctatactat aatggttgac gccgcaacta attatgtggc
     3661 ggattttttt atgaggagtc ggataaatgg cagatagaca ggaaagctta gcgaaagcca
     3721 tcgcaattat tcatcgttca gaaagcactt ttaaaaataa aaaattacta gaaactggtc
     3781 ttaatatagg tcaattacgt tatttatgga cgctttataa agaagatggt atttcccaag
     3841 aatctatggc taaaaggttt atggttgata aagcaagtgt gacaaggcat attaagcgtt
     3901 tggaagaact ggggatgatt cgccgcgaaa ttgatgcgaa agatagacgt attcagcgga
     3961 tttttgtgac ggaaactggt tttcagatgc gcgatttaat tgaagaagtg acagccgaat
     4021 ggtccgcact tttaacagcg aattttagtg aaaaggaaaa agatgactta atgcatttga
     4081 taggacgact ttcagataat gcgattatag cagtcgaagg aggagaatct gaatgaaaga
     4141 acagagtaaa cgattaggtg aagatagcat tccttcactc atggcgagat tgtcgatacc
     4201 ggcatttatc ggcatgtttg ttatggggat gtataatatt gttgatacga ttttcgtgtc
     4261 atatggcgtt gggccatcag gggttgcagc actttcaatt gcattcccag ttcaaatgat
     4321 actaatggca atggcagcta tgtttggtat tggtggcgcg tcgattattt cccgctcgct
     4381 cggtgctggg gaacaaaaac aagcggataa agtattccat caagttattt ggttagtgct
     4441 tatttccagc atttttattg caattgtaac ctttattttt ttagatccgc ttattacgct
     4501 tttcggagca ccggcagata ttcatgatat tgccagtgat ttcttatcgc ttattttgtt
     4561 aggcgcagtg ttccaaacct tcgcgatggc gatgaataat atcgttcgct cagaaggtaa
     4621 tgcgaaaaca gcgatgttaa ccatgattat ttccgctatt ttaaatatga ttttaaaccc
     4681 aattttcatt atgggctttg gtatgggcgt tcgtggttct gcccttgcaa ctgttattgc
     4741 gcaggctgtt ggcgcgattt ggctcttgat ttatttttta tcaggaaaaa gtactttatc
     4801 tttaaaaggg ttctcattcc gaatggattt cccgctgatt cgccggatta tggcaatcgg
     4861 gttcccgtca tttattatga tgtccgcagg tagtatcgtg acagttgcgg taaactggat
     4921 gcttaatatt tatggtggaa cgatggcgat tgcagtatac ggaattgcga accggattgc
     4981 gtcgttcgtc attatgccaa tcaatggtgt cacacaaggg atgcaaccaa tcgtcggctt
     5041 caactacggt tccagacaat tcgaacgcgt aatgaaagct gttaaagtat caatgatagc
     5101 tgcaactgtc atgtcactaa ttgcttgggg atcggtagaa attttcccag gaatgctcgt
     5161 acgaattttc tctaacgacc cagaactgat tgcacaagga acaaacgctg ttagatttat
     5221 gctactagct gcgccaacaa ttggtttcca aattgtctgc ggtgggctat atcaagcact
     5281 tggtcgagca agaatttcat tcatcatttc cctaatgcgc caaatcatct gtttagtacc
     5341 acttttactt attttgccgc agttcttcgg tttagatggt atttggtacg ccttcccatt
     5401 agcagattta ggcgcgttca ccgtctgtct agtgattatg agcaaaacat ggcgccgaat
     5461 ttttaaaaat cccgagatag tttaaggtaa aacgaattgg gtattttcta actagtgtct
     5521 caaaaacaaa ggagcgattt ttatggcaaa aatgtacccg tatttggctt ttgaaaatgc
     5581 aaaagaggct ttaggatatt atgaagaagt gttcggagca acgaatattt caaggcttcc
     5641 agtaagtgag gaacaaagcg aaatgtttgg cttagcaaaa gaaaacctag agaacacaac
     5701 tgttcacggt ggctttaccg tccttggcgc aaacttattt tgttcagatt catttggcaa
     5761 agaagtaaaa ccatccaatc aaatttcgat tatgcttgat tctaacagtg aagacccagc
     5821 ggcagtagcc gacgccgatg ctttctttga aaaagtgagc agctcaggaa gagtaacagt
     5881 aacgttacct ttcgaagagc aattttgggg cggaaaaatg ggacaattcg tcgatgagta
     5941 cggaatttct tggatgattc atacgcaacc ttattctaaa ttataaaaaa caagtggacc
     6001 agatattagt tatcttggtc cactttttta tttggattca cttttttcat taagtaatgt
     6061 tcgccgatgc caggaatgac aaacgatttg ccgactttgc ggtagccgtg tttttcataa
     6121 aaaccaacag cgacaatccg cgcattgcac caaataatat ctgcgccgcg cttccaaatt
     6181 ttcgcttcac cgtctgcaag taaagctgtg ccgaggcctt tcaagcgcat ccggcgttct
     6241 gtcgccacac cgcgaattcg gtactgggca ggattcataa taacagtcga tttttctgga
     6301 taaaaactgg caatcccaag taaaacatcc ttttcaaaag cgcctaaatg aaaagtaccc
     6361 tccatatcat cattagggta aattgcgttt tcttcaggct gttctgggcg aagaacccgg
     6421 tgcctaatat cttgcgtgtc ttttgctttg atttgcttga tttccacggc gcccacctcc
     6481 acgttatttc tttctattat aaccaatctt tctaaaatat ctattcaaaa gttaattttg
     6541 tttcatagga ataaccacga atcagctctt gattaatcca agccaccgtt tcttgtaaaa
     6601 ggtaattttc attttctgga ggtgtctccc agttttgcgg cgtgacaaaa gcttgccgct
     6661 cgcttgataa caaacgccgt tcaccaggcg cgccaataga atgatccaac tcaatgaaaa
     6721 gataagtctg cccgtctaaa atacaataac caggaaactg ctgatagctt ttcgaaagac
     6781 caaggcggct cacggttttc tgcacttctt gatgaaaagc cgggtcgttt aaaatatccg
     6841 catgaacagg cgttagaagt ggctctgtaa gcaaaagtcg gaccgctgtt agaggttttg
     6901 tcgagtcagt ttcccgtttt aacaaacctt gataacggtc aataagccat tttttacggg
     6961 caatgcgagc ttcttcatcc attaattttt gttggtattt tataagcaaa tcgggcaagc
     7021 tttccgatgt gtttttgtcg aggtattgtt ttagttcttg caaggaaaac cccatatact
     7081 gcaacgcttg aatgaggttg agttgttctt cttgagccgt tttgtagtag cgatatccag
     7141 aagttggatc ggtaaaagcc gggaccaaaa gcccaatttt atcataatag cgcagtcgtt
     7201 ggatggagag ttggcttttc tttgccattt ccccaatgga aaaaagcggt tccacattta
     7261 tcaccctttc gtcttgactc tatagttact atacacttta tcataaaggt aattcaaagc
     7321 gagaggtgaa aaaaatgaaa attattgtgg aaaaagatta cgaaaatatg agtaaaacaa
     7381 cgatgcaact gcttttaggg aaaatgtatc aagacaagtt ggttcattta gccatcacag
     7441 caggctccac accgaagcga atgtacgaac tgattgtaga agaaatgaaa gaaaaggcac
     7501 cactgacaaa tgtaagctat tataattttg acgaaattcc aattggggac gaaaaatacg
     7561 gcgtaaccat tgccaattta aaagcgatgt actttgatcc ggcgggaatt ccagaagaac
     7621 aaattcacat gctagatacg aaaaactata cagaccatga agcgcatttg aaagcagttg
     7681 gcggtttgga cgcgatttta atcgggattg gtgaagatgg tcacttctgc gggaacttac
     7741 ctggcgtaac caaattcggc gatgaaaccc gacttgtttc cgttcaatca cgcccagata
     7801 tgttcgatat tttgctcgga gaagttggcg gcgacgtgga aaaagtcccc gaatactacg
     7861 taacaatggg accaaaaagc gtcatgcacg caaaagaagt catcctattc gcaaacggca
     7921 agaaaaaagc agcgattatc aaaaaagccc tacaaggccc agtgacagaa gacattccaa
     7981 gctcgatttt ccagttacac cctaatttta cagtggtgct ggacgaggaa gcggcgagtg
     8041 agttgaatat ttaaaagaaa acccaacctt ctattcagga aggctgggtt tttgattatc
     8101 catgcacact agcaaactcc gcatcacgca actcaacgcg gcgaatttta ccagaatcag
     8161 ttttcggtaa tgcctcaaca aactcaatcc ggcgcggata cttatacgga gcggtttgtt
     8221 ctttcgtgaa tgtttgtaat tcatgcacaa gatcttccgt gccctcgtaa ccatccttta
     8281 agacgataaa tgcttttacg accgtaccgc ggatttcgtc aggacttgcg acaacagcga
     8341 cttcttttac ggctggatga tgtgtgagcg cgtcctctac ttcgaacggt ccaatcgtgt
     8401 aaccagagct aataataata tcgtcattcc ggccttggaa ccagtaataa ttatcttcat
     8461 cgcggatagc gcggtcacca gaaacgaaat aatcaccgcg aatcgctttt tgcaaacgtt
     8521 ctggttcttt atagtactct ttgaaaagtg ctgggaaatc tctacgcatc gcgatatcac
     8581 caatttcacc gacaccaact ggatttcctt cagcatcaat aatcgccatg tattcaggca
     8641 taattggttt gcccatcgaa ccagggcgaa tcggcgtatc aaccagtgtc ccaatcaaca
     8701 gtgtactctc cgtttgaccg tagccgtcgc gaactttaat atcaaaatta tcttggaaaa
     8761 cttgaattac ttcgcggttt agaggttctc ctgctgatac ggcgctacga agggaactta
     8821 aatcatgttc gcgcaaatta tttactttag ccattaagcg atattctgtt ggcgtacagc
     8881 acagcacgtt gattttttct tcttccagta aatgaagttg tttttcagga atgaaacgac
     8941 cgttgtaaat gaagccagtg gcaccttttc cgagtacaga aaggaaagga gaccaaaccc
     9001 atttttgcca accaggtccg gctgtagccc aaacgatatc gtcttcgtga atatcgagcc
     9061 aatgatcagc agcgatacga atatgcgcgt aaccccagcc gtgaatatgt acaacgcctt
     9121 taggattacc tgttgttcca ctcgtgaatg caagcagaca agcatcatcg cgcgaagttt
     9181 ccacgcgttc aaattcggtt gaagcggctt ccattaatgt ttcgtagtga tcccagccgg
     9241 ataatttctc cccaacaata atttttttcg aaacagaagg gatgctttca attttatcaa
     9301 attcagcagt cattccattg taagaaacga ttgcttttac gtttgcatgg tggatgcggt
     9361 attctaaatc gtgcgcttta agtagctcgg atgccgggat gataatggca ccagctttcc
     9421 ataagcccat gtaaattgcg tacgtttcga gtaatctagg tgtcatgacg ataacgtggt
     9481 cacctttttt tatgcctgcg tctttgacaa cattggcaaa tttattcgct tgttcaagca
     9541 ggtggcggta actccaagtt tttgtttcgt tatgctcatt tttccaaatt aaagcagttt
     9601 tttcagaact gaatttagca atctcgtcgg taatattata aagttctgga gcgattaaat
     9661 tttctgaatt cataatgact ctcctttata agtagattgt atattttgat aattttgttt
     9721 taggacctag tattaatata tggtaatata aatgttccgc gaaagcaact aaagtgttcc
     9781 tgtgaaagtt tgagcagatt attcctacat ccaatccaag ctatgctaaa ataacaatga
     9841 gtgacttttt agaaatgagg tgcatagatg gaacgagctt tctttatgca acaagcgctt
     9901 gaagaagccg agaaagcacg agatattgga gaagttccaa ttggtgcagt cgttgtttta
     9961 gatggagaaa ttattgggcg ggcgcataat ttgcgtgaaa cgagccaaaa tgcagtgacc
    10021 catgcggagt tgcttgcgat tcaagatgcg tgtaaacatc aaaattcatg gcgacttagc
    10081 ggtgcagaac tatacgttac gctagaacca tgtccgatgt gtagcggcgc cattttactt
    10141 tcgcggattg aaaaagttta ttacggagcc aaagatccaa aagcgggaac agccggatcg
    10201 ttaatgaatt tactccaaga tgaccgattt aatcatacgt gtgaagtaga agcaggatta
    10261 atggaaaaag aaagcagcga aatgttaaaa agttttttcc aagatctacg aaaacggaat
    10321 aaattgaata ggtcttaatg cttattgtaa gaaatcatac ttttaaatct ttcattgtga
    10381 aataaaaagc aataagcctt accaacattt acagccagat aataattgcg aaaaatatca
    10441 caatctaact aaaacaaaat aacatcgaaa gtactaaata aatttg
//
LOCUS       DABQVC010000102        10469 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.102,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000102 DABQVC010000000
VERSION     DABQVC010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10469
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.102"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..948
                     /locus_tag="IBJ56_001790"
     CDS             <1..948
                     /locus_tag="IBJ56_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418044.1"
                     /translation="LRKVIDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRNPG
                     NLLGICDLFIYHFYKGNRKEADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEADDL
                     LEQVADLEVTERSKYYYFRAKSSYYLGDVEGAKMFWHSFLECDLYEDVRFPWEQEADL
                     TNDTRLVLEMLQEEDDLTHMLGVYALTISGNRPELVLFHPLLDMSDWSYMEHLMFTNF
                     DYFPDGAIEQNGYLIAKAMIILKENGVLLNEENMALYKQMFSLVLIDAGKDLILGRYT
                     IETVASAIAKLFLPHLKLELVEEFECSKCARDIERVLSR"
     gene            1027..1986
                     /gene="trxB"
                     /locus_tag="IBJ56_001791"
     CDS             1027..1986
                     /gene="trxB"
                     /locus_tag="IBJ56_001791"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HAM3418045.1"
                     /translation="MASEEKIYDVIIIGAGPAGMTAALYTSRADLDTLMIERGVPGGQ
                     MVNTAEVENYPGFDSILGPDLSDKMLSGAKQFGAEYAYGDIKEVVDGKEFKTVTAGSK
                     TYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGAFFKNRELIVVGGGDSAVE
                     EGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGKKVTGA
                     KLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDDEGYIVTDEEMRTNLPGIFA
                     AGDVRAKSLRQIVTATGDGGLAGQNAQKYVEELKESLEAEAAK"
     gene            2106..3089
                     /gene="galE"
                     /locus_tag="IBJ56_001792"
     CDS             2106..3089
                     /gene="galE"
                     /locus_tag="IBJ56_001792"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HAM3418046.1"
                     /translation="MSIVVLGGAGYIGSHAVDELITRGYEVVVIDNLRTGHKESIHTK
                     AKFYEGDIRDKAFLSSVFEKEKVDGVIHFAASSLVGESMEVPLVYLNNNVYGTQIVLE
                     VMEQFGVKHIVFSSSAATYGEPERVPITEDMPTNPESTYGETKLIMEKMMKWCDKAYD
                     MKYVALRYFNVAGAKADGSIGEDHKPESHLVPIILQVALGQREKLAIYGDDYNTPDGT
                     CIRDYVQVEDLIDAHIKALEYLKNGGESNIFNLGSSNGFSVKEMLEAARTVTGKEIPA
                     EVVPRRAGDPGTLIASSDKAREILGWEPTYTDVKDIIATAWKWHVSHPNGY"
     gene            3106..4167
                     /locus_tag="IBJ56_001793"
     CDS             3106..4167
                     /locus_tag="IBJ56_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HAM3418047.1"
                     /translation="MIFIEVMKERFGEFEGETVWKWTMVNDHGMRMSVLNYGAIVTSL
                     ETKDKFGDFANISLGFTNLDDYLAHSPYFGATLGPVAGRITNGQFSLDGKQFQLIQNE
                     GANHRHGGKFNFSKKLWDVSVEKSLDQIVMTFEYCWADGENGYPGNIDAKMTYTLNNK
                     NEWLLDYEAKSDQPTIYNPSNHIYFNLSGEAGSTVLQHQLWVNSDSFLPIDEEFLPIG
                     EKRLAENTIFDLRAGREVAEITQSQDQQVKLVGAGLDHAFILKHENSRPDAVLFDPKS
                     GRRLEMETKADSVLIYTANSLDGSFEIGERTVPKYAGITMETQGLVDAINHDGFGDIV
                     LRPEKPFTSRTAFRFTVES"
     gene            4209..5939
                     /locus_tag="IBJ56_001794"
     CDS             4209..5939
                     /locus_tag="IBJ56_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HAM3418048.1"
                     /translation="MNWQEEYQKWVANDKLDSTLRKQLTNMEANEKELEDSFYRNMEF
                     GTAGMRGVLGAGTNRMNIYTIRKASLGLAQFVAENGEEAKKRGIVIAYDPRHMSREFA
                     FESAAVLGHHGVKSYVFDALRPTPELSFAVRHLNAFGGIVITASHNPPEYNGYKIYGE
                     DGGQMPPTGASAVIEYINAVEDIFSVEVANQELLIENGLLEVISEKVDRPYLEKLKEV
                     IVNKELVQERGEDLKIVFTPLHGTGGILGVPALESVGFTNIVKVDEQFVNDPDFGTVK
                     SPNPENREAFLLAIEYGKKFGGDILVGTDPDADRLGVAVRNLDGEYEVLSGNQIGAII
                     LHYLLKQKKAQNELPANAAVLKSIVTSNLGTEIAKHYGAEMIEVLTGFKFIAEQIKHF
                     EETGKHTFEFGYEESNGYMVKPFTRDKDAIQAVLAIAEVALVSKVEGGSLLEDLEQIY
                     AEFGYYKEDLVSLTLSGKDGSRRIKEITSNFREQLPTSMGGFPVERAEDYLRSETTWI
                     ATGKTEAIHLPTADVIKCYFEDGSWFCLRPSGTEPKIKFYFSIRGESKEESATKLEKV
                     KADLMQHIEA"
     gene            6047..6922
                     /gene="rapZ"
                     /locus_tag="IBJ56_001795"
     CDS             6047..6922
                     /gene="rapZ"
                     /locus_tag="IBJ56_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HAM3418049.1"
                     /translation="MASKQLKLVIITGMSGAGKTVAMQSLEDLGYFCVDNLPPSLLPK
                     FWELMKESDKMDKIALVMDLRGREFFDSIEPALDELDNTNFITTKILFLEADDKVLVS
                     RYKETRRHHPLEPNGSVLDGINAERELLSDLKGRSQLVINTSNMAPRELRERINNEFQ
                     TEDKDIFNVQLMSFGFKYGIPIDADLVFDVRFLPNPHYIDKMRPLTGLDEDVYEYVMK
                     WPETQTFLDKLVDLLMFTLPFYKREGKTQLVIAIGCTGGQHRSVALTEFVGKAIQQKY
                     ETTISHRDMKRRKGR"
     gene            6924..7892
                     /locus_tag="IBJ56_001796"
     CDS             6924..7892
                     /locus_tag="IBJ56_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HAM3418050.1"
                     /translation="MKKEMKPKVVVIGGGTGLPVILKGLKKKDIHLTAIVTVADDGGS
                     SGKIREQMDVLPPGDIRNVMLALSNVDPRVVDLFQYRFAVDGDLSGHVIGNLILTALS
                     QLNDSYVDAINVLATVLKIRGKVIPATDQPLILNAEMEDGSIVHGESLIPLQGKHINR
                     VYIEPENVKPYPTAVEAVKEADLIVIGPGSLYTSILPNLLLTELADEIIASKAPKVYI
                     TNILTQIGETDFFSDADHIKVIHEHVGKSFIDKTLINTTTVPKELLFPEDVAQVEHNA
                     KGMEELGVEAIYQDFLSTEDGLVRHAAEKVADALLAMLPNQTIEKE"
     gene            7900..8871
                     /gene="whiA"
                     /locus_tag="IBJ56_001797"
     CDS             7900..8871
                     /gene="whiA"
                     /locus_tag="IBJ56_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HAM3418051.1"
                     /translation="MSFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSNQLVIM
                     DVQTENAAIARRMYQLLKDLYEVPIELLVRRKMKLKKNNVYIVRLKSGTRGILEDLRI
                     LEPPMTFTKSIDRGFVKKRSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEA
                     ICALMNQFDLNARTLERKNGFITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRN
                     SVNRLVNCETANLNKTINAAVRQIDNIKYIQSTVGLEALPERLREIAALRIANEDVTL
                     KELGEMLTTGQVSKSGINHRLRKLDQIAERLRSGETPAQVGLKISNS"
     gene            8898..9914
                     /gene="namA"
                     /locus_tag="IBJ56_001798"
     CDS             8898..9914
                     /gene="namA"
                     /locus_tag="IBJ56_001798"
                     /EC_number="1.6.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH dehydrogenase NamA"
                     /protein_id="HAM3418052.1"
                     /translation="MSKLFSEYKLKDVTLKNRIVMSPMCMYSVENKDGIATDFHFAHY
                     VSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKKLVDGLHYHGAKAGIQL
                     AHAGRKAVLPGEIVAPSAIAFDEKSDKPVELTKEAIKEVVADFKRAAYRAKEAGFDVI
                     EIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAVKEVWDGPIIVRVSAT
                     DYAHGGLQLEDHIPFAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAG
                     IATGALGLITRGEQAEEILCNERADLIIVGRELLRNPYFAKDAAKQLGETIEGPKQYS
                     RAWK"
     gene            complement(9967..>10469)
                     /locus_tag="IBJ56_001799"
     CDS             complement(9967..>10469)
                     /locus_tag="IBJ56_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HAM3418053.1"
                     /translation="FLDLNANLLTNTPDFQNLPNLTDLNLRHNNLTGTMVNYTNLPSL
                     ESLNLDYNFLTELPSNVLDTIYVQSQNGELPDQTINQGNTCTIDLPIYFQMEEINMLV
                     SPEVTGEYIGTNIVQLPTTVNAEDNSITVDTSALSPGEYKLDISYNHNYATGGVCSYD
                     WNVTIN"
BASE COUNT         3331 a         1620 c         2472 g         3046 t
ORIGIN      
        1 ttaagaaaag tcattgatga aaaaccgaat ttttggcctg cttataatca actcgcttcg
       61 ctttattttg agcaattgaa agaagaagag ggcgtcagag ttttaagtga tttattatcg
      121 agaaatccgg gtaatctctt gggtatttgt gatttattta tttatcactt ttataagggg
      181 aaccgtaaag aggcggatga gctttatctg gaacttcggg atgtcctacc ggttctagcg
      241 catcataaag agaagcttgg tctgattcat gcgatgatgg gtgaatacga ggaagcggat
      301 gatttgcttg aacaagtggc tgacttggaa gtgactgagc gtagtaagta ttattatttc
      361 cgtgcgaaat cttcctatta tttaggggat gtggaagggg caaaaatgtt ttggcattcc
      421 tttttagagt gtgatttgta tgaagatgtt cggtttccgt gggagcaaga ggcggattta
      481 acgaatgaca cgcgactggt gcttgagatg cttcaagagg aagatgattt gactcatatg
      541 ctaggtgttt atgcattaac tatttctgga aatcgtccgg agttagtatt atttcacccg
      601 ttacttgata tgagcgattg gtcttacatg gagcatttaa tgtttactaa ttttgattat
      661 tttccggatg gggctattga acaaaatggt tatctgattg caaaagcgat gattatttta
      721 aaagaaaatg gtgttttgtt aaatgaagaa aatatggcgt tatataagca gatgttttcg
      781 ttagttttaa tagatgctgg gaaagattta atacttggtc gttatacgat agaaactgtg
      841 gctagtgcga ttgctaagct gtttttacct catttgaagc ttgaattagt agaagaattt
      901 gaatgtagta aatgtgcgcg agatattgag cgagttctga gcagataaat agaccttttt
      961 gctattccgt attaggatta atttaggcta actattgtat acacataaac gaggagggca
     1021 aaaagaatgg ctagtgaaga aaaaatttat gatgtgatta ttattggagc gggaccagct
     1081 ggaatgacag ctgctttata tacttcccgt gcagatttag atacgttaat gattgaacgc
     1141 ggagtacccg gcggacaaat ggttaacaca gctgaggttg aaaattaccc tggatttgat
     1201 agtattttag gaccagattt atccgataag atgcttagcg gtgcgaaaca atttggcgct
     1261 gagtatgctt atggggacat taaagaagtc gttgatggca aagaatttaa aactgtaacg
     1321 gctggatcga aaacctataa agctcgggcg attattattg cgactggtgc tgaacaccgg
     1381 aaacttggtg cagctggcga agaagagctt agtggacgcg gcgtttctta ttgtgctgtt
     1441 tgtgatggag ctttcttcaa aaatcgcgaa ttaatcgtgg ttggcggcgg agactctgca
     1501 gtggaagaag gaacttattt gactcgttat gcagataaag taacgatagt acaccgtcgt
     1561 gataaattgc gcgcacaaca aattttacaa gatcgtgctt tcaaagatga aaaagttgat
     1621 ttcatttgga atagtacagt agaagaaatt gttggcgatg gcaaaaaagt aactggagca
     1681 aaacttgttt ccacagtgga tggttccgaa tctattatgc cagtggatgg tgttttcatc
     1741 tatgttggac ttgttccact tacgaaagca ttcttaaatt taggtattac agatgatgaa
     1801 ggatacatcg taacggacga ggaaatgcgt acaaaccttc ctggtatttt tgcagctggt
     1861 gatgttcgtg cgaaaagctt acgccaaatt gtaacagcaa caggcgatgg cggacttgct
     1921 ggacaaaacg ctcaaaaata tgtagaagaa ttaaaagagt cgctagaagc agaggcagct
     1981 aaataacagt aaagaaaact cgaatgggtc tgagattatt tatcttagac ccatttttgc
     2041 gtgactatat agacttgagt agtgtaaaat ggaagacaaa gactattgtt aggagagaga
     2101 taataatgag tattgttgta cttggtggcg ctggctatat cggttcacat gcagtagatg
     2161 agttaattac tcgcggatat gaagtagtag ttattgataa tttaagaaca gggcacaagg
     2221 aatccattca tacaaaggca aaattttatg aaggagatat tcgagataag gcatttttaa
     2281 gttcagtttt tgaaaaagaa aaggtagatg gtgtgattca ctttgctgct agttcacttg
     2341 taggagaatc gatggaagta ccgcttgttt atttaaataa taatgtttat ggtacgcaaa
     2401 ttgtcttaga agtgatggag caatttggtg tgaagcatat tgtcttttct tctagcgctg
     2461 caacatatgg tgagccagaa cgagtaccga ttacggaaga tatgccaaca aatccggaaa
     2521 gtacttacgg cgaaacgaag ctaatcatgg aaaaaatgat gaaatggtgc gataaagcgt
     2581 atgatatgaa atatgttgca ctccggtatt ttaatgttgc tggcgccaaa gcggatggtt
     2641 caattgggga agatcacaaa ccagaatcac acttagtccc aattatttta caagttgcgc
     2701 ttggtcaacg agaaaaatta gcgatttacg gtgacgacta caatacgcct gatggtactt
     2761 gtattcgtga ttatgtacaa gtagaagatt taattgacgc gcatattaaa gcgctagaat
     2821 acttgaaaaa tggcggggaa agtaatattt tcaaccttgg tagcagtaac ggtttttcag
     2881 tgaaagaaat gcttgaagca gctcgtactg taacaggtaa agaaattcca gctgaagttg
     2941 taccacgccg tgcaggagat ccaggaacgt taattgcttc aagtgataaa gcgcgtgaaa
     3001 ttcttggttg ggagccaact tatacagacg taaaagatat tatcgccact gcttggaaat
     3061 ggcacgtatc tcatccaaat ggctattaat aacttatgaa ggaatgtgat ttttatcgaa
     3121 gtaatgaagg agcgatttgg ggagtttgag ggagaaactg tttggaagtg gacgatggta
     3181 aatgatcatg gtatgcgcat gagtgtttta aattacggag cgattgttac ttcccttgaa
     3241 acaaaagata aatttggtga ttttgcgaat attagtcttg gttttacaaa tttagatgat
     3301 tatttggcac actccccata cttcggcgcg acacttggcc ctgttgctgg acgcattaca
     3361 aatgggcaat ttagtttgga cggtaaacaa tttcaactga ttcaaaatga aggagctaac
     3421 catcgtcacg gtgggaaatt caattttagt aagaagcttt gggatgtttc agtagaaaaa
     3481 agtcttgatc aaattgtgat gacttttgaa tactgctggg cggatggaga aaatggctat
     3541 ccaggaaata ttgatgcaaa aatgacatat acgttaaata ataaaaatga atggctgctt
     3601 gattatgaag cgaaaagcga tcagccgact atatataacc cgagcaatca tatttatttt
     3661 aatctaagcg gagaagctgg ttcaacggtt ttacaacatc agctttgggt taatagtgac
     3721 agcttcctac caattgatga agagtttctc ccaattgggg aaaagcggtt agcggaaaat
     3781 actatctttg atttgcgtgc aggtcgtgaa gtagcggaga ttacacaaag tcaggaccag
     3841 caagtaaaat tagttggtgc ggggctggat catgcattca ttttaaaaca tgaaaatagt
     3901 cgtccagatg cagttttgtt tgatccaaag tcaggacggc gcttggaaat ggaaaccaaa
     3961 gctgactcgg tattaattta tacggcgaat agtttggatg gctcttttga gattggcgag
     4021 cgaactgtgc caaaatatgc tggcataaca atggaaacac agggtttagt agatgcgatt
     4081 aaccatgacg gatttggtga tattgtactt cgaccagaaa aaccttttac atctagaaca
     4141 gcttttcgtt tcacagtgga gagctgataa attttaatta aagagttcta aatgaaggag
     4201 tgtagagaat gaattggcaa gaagaatatc aaaaatgggt tgctaatgac aaattagata
     4261 gcacattaag aaaacaatta acgaatatgg aagcaaatga aaaagaactt gaggatagtt
     4321 tttatcgtaa tatggaattt ggaacggctg ggatgcgtgg tgtactaggc gctggaacaa
     4381 accgcatgaa tatctatact attcgtaagg cttctctagg tttggcgcaa tttgtggcgg
     4441 agaacgggga agaggctaaa aaacgtggga tagttattgc gtatgatcct cgtcatatgt
     4501 cgcgtgaatt tgcttttgaa tcggcggcgg tattagggca tcatggtgtg aaaagctatg
     4561 tttttgatgc gcttcgacca acaccggaac tttcctttgc agtacgtcat ttaaatgcgt
     4621 ttggtgggat tgttattaca gctagccata acccaccaga atacaatggc tacaagattt
     4681 atggtgaaga tggcggacaa atgcctccaa caggggcaag tgctgtaatt gaatacataa
     4741 acgcggtaga ggatattttt tctgtagaag tagcgaacca agagctatta attgaaaatg
     4801 gtttacttga ggtaatcagt gaaaaagtag accgtccata tttggaaaaa ttaaaagagg
     4861 ttattgtcaa taaagagctt gttcaagaac gaggggagga tttgaaaatt gttttcacgc
     4921 cccttcatgg tactggcgga attcttggcg ttcctgcgct tgaaagtgtt ggctttacga
     4981 atattgttaa ggttgacgag caatttgtga atgatcccga ttttggaacg gtaaaatcgc
     5041 ctaacccgga aaaccgcgaa gcctttttac ttgcgattga atatggtaag aagtttggtg
     5101 gcgacatttt agtcggaaca gatccggatg ctgaccgttt aggcgtggca gttcgtaatc
     5161 ttgacggcga atatgaagtg ttatctggaa accaaattgg cgcgattatt ttacattatt
     5221 tattaaaaca aaagaaagcg caaaatgaat tgccagctaa tgcagcggta ttaaaatcta
     5281 ttgtaacaag taatcttgga acagaaatcg cgaaacatta cggtgcggaa atgattgaag
     5341 tattaactgg tttcaaattt attgcagaac aaattaagca ctttgaagaa actggcaagc
     5401 atacgtttga atttggttat gaagaaagta atggttatat ggttaagccg tttacgcgtg
     5461 ataaagatgc gattcaagcg gtgcttgcga ttgcggaagt ggcgctcgtt agcaaagtag
     5521 aaggtggaag tttactagaa gatttagagc aaatttatgc tgagtttggc tattacaaag
     5581 aagatctagt ttccttaact ttaagcggta aggatggttc tcggcgcatc aaagaaatta
     5641 caagtaattt tcgcgagcaa ctaccaacaa gtatgggtgg attccccgtg gaacgtgcgg
     5701 aagattattt aagaagcgaa acaacttgga ttgctaccgg aaaaacggaa gcgattcatt
     5761 tgccaacagc agatgtcatt aaatgttatt ttgaagatgg ttcatggttc tgtttacgtc
     5821 catccggcac agaaccgaaa atcaaattct actttagtat tcgtggtgaa agtaaagaag
     5881 aaagtgcaac aaaattagaa aaagtgaaag ctgatttgat gcaacatatc gaagcttaaa
     5941 aagaaaaatc ccggaaactc gctttagaga cttttccggg attttctagt gagaagtgtg
     6001 ctaaaatgga agatagatat tatttgtgcg aaaggatgag gcagatatgg cttctaaaca
     6061 attaaaatta gtaatcatta ctgggatgtc tggagcagga aaaacagtcg caatgcagtc
     6121 tttagaagat ctcggttatt tttgtgtaga taatttaccg ccaagtttac ttccaaagtt
     6181 ctgggagcta atgaaagaaa gcgataaaat ggataaaatc gcgctcgtaa tggatcttcg
     6241 cggccgtgag tttttcgatt ccattgaacc agcgctagat gagctagata ataccaattt
     6301 tataacaacg aaaatcctct ttttagaggc tgatgataag gtacttgttt cgcgttataa
     6361 agaaacgcgc cgccaccatc cactggagcc taatgggtct gtgctagacg ggattaatgc
     6421 agagcgcgaa ctgcttagtg atttaaaagg ccgttcgcag ttagttatta atacatcgaa
     6481 tatggcgcca cgtgagttac gcgagcgaat taacaatgaa ttccaaaccg aagataaaga
     6541 tatattcaat gtgcaattga tgtcatttgg tttcaaatac ggcattccga ttgatgctga
     6601 tttagtgttt gatgtgcgct ttttaccgaa tccgcattac attgacaaaa tgcgtccgtt
     6661 gacaggactt gatgaagatg tgtatgaata tgtgatgaaa tggccagaaa cgcagacctt
     6721 tttagataag ttagtagatc tattaatgtt tacacttcct ttttacaaac gagaaggaaa
     6781 aacacaatta gttattgcca ttggatgtac tggaggacag catcgttcag tagctttgac
     6841 agagttcgtt ggtaaggcaa ttcaacaaaa atatgaaaca acgatttcac accgagatat
     6901 gaaacgtaga aagggccgtt aatatgaaaa aggaaatgaa acctaaagta gtagtaatcg
     6961 gtggcgggac cggtcttcca gtcattttaa aagggcttaa aaagaaggat attcatttaa
     7021 cggccattgt gaccgtagcg gacgatggtg gtagttctgg taaaattcgc gagcaaatgg
     7081 atgtgcttcc cccaggtgat atacgcaatg tcatgctagc tttatccaat gttgatccac
     7141 gggttgtcga tttatttcaa tatcgttttg cggtagatgg tgatttatcg gggcatgtta
     7201 ttggaaattt gattttaacg gctttatcgc aattgaatga tagttatgtt gatgcgatta
     7261 atgtgctagc aacggtgctg aaaatccgcg gcaaagttat tccagcaacg gatcaaccac
     7321 tcatcttaaa tgccgaaatg gaagatggtt ctattgtgca cggtgaatcg cttatcccgt
     7381 tacaaggaaa gcatattaat cgtgtgtata ttgaaccaga aaatgtaaaa ccatatccga
     7441 cagcagtcga agcagtgaaa gaggctgatt tgattgttat tggtccaggg agtttataca
     7501 caagtatttt accaaatcta ttacttacgg aattagctga tgaaattata gcaagcaagg
     7561 ctccgaaagt atacattacg aacattttaa cgcaaattgg cgaaaccgac tttttctcag
     7621 atgcggatca tattaaagtt atccatgagc atgtgggaaa atcttttata gataaaacgt
     7681 taattaatac gacgactgtt ccgaaagaac ttttattccc agaggatgtt gcgcaagtag
     7741 agcataatgc caaaggaatg gaagagcttg gcgtagaagc catttatcaa gattttcttt
     7801 ctacagagga tggccttgtg cgccatgccg ctgaaaaggt ggcggacgcg cttttagcga
     7861 tgttacctaa ccaaactatt gaaaaggagt gagtaagcca tgtcatttgc atcggaaacc
     7921 aagaaagaat taacccatat ggacgtaagt gatagcgatg caaaagtgga actcgcagct
     7981 tttattcgaa tgaatggtgc catctcgttt tcgaatcaat tagtgataat ggatgtccaa
     8041 accgagaatg cagccatagc tagacgaatg tatcaattac tgaaagactt atacgaagtg
     8101 ccaatagaac ttcttgtacg tcgcaaaatg aagttgaaaa aaaataatgt ttatatagtt
     8161 cgcttgaagt caggtacacg ggggattttg gaagatttac ggatactaga gccaccgatg
     8221 acgtttacga aatcgattga taggggattt gttaagaaga gaagcgctaa acgtgcttat
     8281 ttgcgtggag cctttttggc aagtgggtca gttaataatc cggaaacttc ttcttatcat
     8341 ttagaaattt tctctgttta tgaggagcac aatgaggcga tttgcgcttt gatgaatcaa
     8401 ttcgatctca atgcgcgaac gcttgaacgg aaaaatggtt ttattaccta tttgaaagaa
     8461 gcagaaaaaa tcacggaatt cttgagtatt atcggagcaa ctagcgcgct tcttcatttt
     8521 gaggatgttc ggattatgcg tgatatgcgg aattcggtga acaggctagt gaactgtgaa
     8581 acggcgaatc tcaacaagac aattaatgcg gctgttaggc aaatcgataa tatcaagtat
     8641 atccaatcaa ccgttgggct agaagcttta ccagaacgac tgcgtgagat tgcagcgctt
     8701 cgtatagcta atgaagatgt taccttaaaa gagctaggcg aaatgctgac aacaggtcaa
     8761 gtaagtaaat caggtattaa tcatcgtctc cggaaactag atcagattgc agagcgcctt
     8821 agaagcgggg aaacaccagc acaagtagga ctgaaaatca gtaatagtta attaaaaaga
     8881 aaaggatgcg aattagaatg tccaaattat tttcagaata taaattaaaa gatgtaacgc
     8941 taaaaaacag aattgttatg tcaccaatgt gtatgtattc agtagaaaat aaagacggga
     9001 ttgcaacaga ctttcatttt gcacactatg tctcgagagc tgctggtggt acagggcttg
     9061 tcattttaga agctacggct gttcaagaag taggccggat ttctgaattt gatttaggac
     9121 tatggaatga cgagcaagtt ccagctttga aaaaattagt agatggactt cattatcacg
     9181 gagcaaaagc aggaattcaa ttagcacacg ctggaagaaa agctgtttta ccaggtgaaa
     9241 tagtggctcc ttctgctatt gcttttgatg aaaaatcaga caaaccagta gagcttacga
     9301 aagaagcaat taaagaggtt gtggctgatt ttaaacgtgc cgcttatcgt gcaaaagaag
     9361 cgggatttga tgttattgag attcatgctg ctcatggtta tttaattcac caattcttat
     9421 caccaattac gaatcgtcgc gaagataatt acggtggacc tgctggcaat cgatataaaa
     9481 ttttaagtga tattattaaa gcagtgaagg aagtatggga cggcccgatt atcgttcgag
     9541 tatccgctac tgactatgca catggcggtt tgcaactaga agatcatatt ccttttgcaa
     9601 aatggatgaa agcagatggc gtggaactaa ttgatgtgag tacaggtggt ttagttaatg
     9661 tggctccacc agttttccca ggttatcaag tgccattcgc agatgaaatt cgtcgcgggg
     9721 cgggtattgc gactggagcg cttgggctta ttacacgagg cgaacaagcg gaagaaattt
     9781 tatgcaatga acgagcggat ttaattattg ttggtcgtga attattacga aatccttatt
     9841 ttgctaaaga tgcagccaaa caattaggcg aaacaattga aggaccaaaa caatattcac
     9901 gcgcgtggaa ataaataaaa agctggaagt tcagagtttt tgaacttcca gcttttttag
     9961 tagaaattaa ttaatagtta cattccaatc ataagagcat acgcctccag tggcataatt
    10021 gtgattatac gagatgtcta atttatactc accaggactt agagcggatg tatccactgt
    10081 tatagagttg tcctccgcat taactgtcgt cggaagttgg actatattag tcccgatata
    10141 ttctcctgta acttctgggc tgactaacat gttaatttct tccatttgga aataaatagg
    10201 taaatcaata gtacatgtat tgccctgatt aatagtttga tcaggaagct ctccattttg
    10261 actttgaaca taaatagtat ctaatacatt agaaggtagt tcagttaaaa aattataatc
    10321 taagtttaat gattctaaac taggtaagtt ggtgtagtta accatcgtac cggttaaatt
    10381 gttatgtctt aaatttaaat cagttaagtt aggtaaattt tgaaaatctg gtgtattggt
    10441 taataaattt gcatttaaat ctaaaaatg
//
LOCUS       DABQVC010000103        10394 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.103,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000103 DABQVC010000000
VERSION     DABQVC010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10394
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.103"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(208..1704)
                     /gene="lysS"
                     /locus_tag="IBJ56_001800"
     CDS             complement(208..1704)
                     /gene="lysS"
                     /locus_tag="IBJ56_001800"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HAM3418054.1"
                     /translation="MSNENHEELNDQLIVRREKVDTLREEGIDPFGEKFIRSISPEEI
                     ETKFADKSKEELEEAAIEVSVAGRIMTKRVKGKVGFTHIQDRFHQLQIYIRKDAIGED
                     AYAVFKLADLGDIIGIKGTIFRTNTGELSVKATEFTLLSKSLRPLPDKYHGLKDVEQR
                     YRQRYLDLITNEESQNRFVMRSKILKYTRDYMDNQGFLEVETPVLHTIAGGAAAKPFI
                     THHNALDMELYLRIALELHLKRLIVGGMDKVYEIGRVFRNEGTSTRHNPEFTMLESYA
                     AYEDYEDVMDLVEGLVSTVCKQVNGTTEITYGEYNVDLTPNWRRIHMADAVKEYVGVD
                     FWNVTSDEEARELAKKHNVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISP
                     LAKKNKEDDRFTDRFELFIVGREHANAFSELNDPIDQRERFEAQMKEREQGNDEAHGM
                     DADFLEALEYGLPPTGGLGIGIDRLVMLLTDAPSIRDILLFPTMKHRD"
     gene            complement(1819..2814)
                     /gene="dusB"
                     /locus_tag="IBJ56_001801"
     CDS             complement(1819..2814)
                     /gene="dusB"
                     /locus_tag="IBJ56_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HAM3418055.1"
                     /translation="MFKIGNVEIKNQVVVAPMAGISNSAFRLTVKEFGAGLVCCEMIS
                     DKGIAYRNAKTLDMLYIDEKEKPLSLQIFGGEKETLVEAAKFVAENTTADIIDINMGC
                     PVNKIIKCEAGAKWLLDPNKVYDMVAAVVDAVDKPVTVKMRIGWDEEHVFAIENALAA
                     ERAGAAAVAMHGRTRVQMYEGSANWDVLRDVKRELKIPFMANGDVRTPEDAKRILEHT
                     GADGVMIGRAALGNPWMIYRTVKFLETGELLPEPEPREKMQTAMLHLNRLVELKGENI
                     AVREFRQHAAYYLKGARGSTRAKVAANQATKQSEMEAILNEFVLQYEEKALAKQD"
     gene            complement(2890..3369)
                     /gene="folK"
                     /locus_tag="IBJ56_001802"
     CDS             complement(2890..3369)
                     /gene="folK"
                     /locus_tag="IBJ56_001802"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HAM3418056.1"
                     /translation="MAKAFLSIGTNLGERLENLNDALSGLAASDKIKITNVSSVYETD
                     AVGYEDQAAFLNIAVEIETDFPPVDLLDFCLALELELGRVRLFKWGPRLIDIDVLLYD
                     DVKIDTEKLKIPHPYMKERAFVLIPLIEISPEKSNLVDNPAILEEQGVRKIKNQVNW"
     gene            complement(3362..3736)
                     /gene="folB"
                     /locus_tag="IBJ56_001803"
     CDS             complement(3362..3736)
                     /gene="folB"
                     /locus_tag="IBJ56_001803"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HAM3418057.1"
                     /translation="MDKIYLNELVFYGYHGVLAEETKLGQTFRVSLILGLSTKKAGIS
                     DSVDDTVSYAEVYETVKEIVEGTPFKLIEALAEKIATEVLTGYPLLEEVTVKLIKPNP
                     PIPGHYDSVAVEIERKKSDLNG"
     gene            complement(3750..4565)
                     /gene="folP"
                     /locus_tag="IBJ56_001804"
     CDS             complement(3750..4565)
                     /gene="folP"
                     /locus_tag="IBJ56_001804"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HAM3418058.1"
                     /translation="MKKWKRDHLGMVMGILNVTPDSFSDGGKYMQVEEAVARALQMAE
                     DGAAIIDVGGISTRPGFSEVTPEEELNRIIPVIKAVRTKLPDIWISVDTWRAEVAEKA
                     ILAGVNMINDQWGAKKEPKIAEVAAKYNVPICLMHNRENTQYDNFLEDVKKDLLESVA
                     IAKAASVPDEHIILDPGFGFVKTPAQNLEVLRRIDEIVALGYEVLLGTSRKSTIGLVL
                     GTTPEDRMEGTGATTVYGFSKGCTITRVHDVLPIARMVRMTDAITGKLDITKL"
     gene            complement(5264..6190)
                     /gene="cysK"
                     /locus_tag="IBJ56_001805"
     CDS             complement(5264..6190)
                     /gene="cysK"
                     /locus_tag="IBJ56_001805"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HAM3418059.1"
                     /translation="MTIANSITDLIGKTPIVKLNRLPEAGSADVYVKLEFQNPGGSVK
                     DRIANAMIESAEKSGALKPGDTIIEPTSGNTGIGLAMVAAAKGYQAIFVMPETMSLER
                     RKLLQAYGAKLVLTPGPDGMKGAIAKAEELAKENNYFVPQQFHNPANPAVHEETTGPE
                     IVEAFGKDGLDAFIAGVGTGGTVTGVGHVLKKNYPDVKIYALEPEESPVLSGGSPSPH
                     KIQGIGAGFVPDTLDTKVYDGILKVSSEDALETAREVAKKEGILVGISSGATVKAALD
                     LAKELGAGKKVLAIVASNGERYLSTPLYNFED"
     gene            complement(6306..7190)
                     /gene="hslO"
                     /locus_tag="IBJ56_001806"
     CDS             complement(6306..7190)
                     /gene="hslO"
                     /locus_tag="IBJ56_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HAM3418060.1"
                     /translation="MSDYLVKALAYDGMARVYAAVTTETIKEAQRRHDTWSVSSAALG
                     RTMTGTLFLGAMQKEDQKITVKIEGDGPIGPIVADSNAQGQIRGYVTNPHVHFSELNE
                     AGKLDVRRGVGTSGMLSVVKDLGFGENFTGQTPIVSGEIGEDFTYYLATSEQINSSVG
                     VGVLVNPDDTIEAAGGFMLQLLPGATDEIIDEIEKNLTALPTVSRMIEAGETPESILA
                     KLAGGEDKLQILEKIPVSFECNCSKERFGSAIISLGKEEIRSMIEEDHGAEAECHFCR
                     NTYDFSKEELEKLYEEAK"
     gene            complement(7206..7985)
                     /locus_tag="IBJ56_001807"
     CDS             complement(7206..7985)
                     /locus_tag="IBJ56_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HAM3418061.1"
                     /translation="MILVIDVGNTNCTVGVYEKQKLLKHWRMTTDRHRTSDELGMTVL
                     NFFSYANLTPSDIQGIIISSVVPPIMHAMETMCVRYFNIRPLIVGPGIKTGLNLKVDN
                     PREIGSDRIVNAVAASEEYGTPVIVVDFGTATTFCYIDESGVYQGGAIAPGIMISTEA
                     LYNRAAKLPRVDIAESNQIIGKSTVASMQAGIFYGFVGQCEGIIAEIKKQSNASPVVV
                     ATGGLARMITEKSSAVDILDPFLTLKGLELLYRRNKPTTEK"
     gene            complement(8101..10164)
                     /locus_tag="IBJ56_001808"
     CDS             complement(8101..10164)
                     /locus_tag="IBJ56_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HAM3418062.1"
                     /translation="MNRFFRNAIFYVIIFLVIIGIVASFNSNKEAAKDISYSEFVSKL
                     EDGKVKSVEIQPDRSVYTINGEFKSSDKSSDDKKTGLGQSKTSSTAFTTYALNSDTSL
                     GDLQKTLDKEDVKTTIVPAKQNSGWVTFLTSIVPFVIIFILFFFLMSQSQGGGGGKVM
                     SFGKSKAKLYNDDKKKVRFTDVAGADEEKQELVEVVEFLKDPRKFADLGARIPKGVLL
                     VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCII
                     FIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPA
                     LLRPGRFDRQIMVDRPDVKGREAVLRVHARNKPLAKSVDLKAIAQRTPGFSGADLENL
                     LNEAALVAARSDKKEIDMSDLDEASDRVIAGPAKKNRVISEKERRTVAYHEGGHVIVG
                     MVLDEAEVVHKVTIVPRGQAGGYAVMLPKEDRFLMTKAELMDRITGLLGGRVAEEVTF
                     GEVTTGASNDFERATELARRMVTEWGMSDKIGPLQFTSGNGQVFMGRDFGSDKGYSDK
                     IAYEIDTEVQSLIRYCYDRAKTIITEHQEQHKLIAETLLKVETLDARQIRSLFDDGVM
                     PPDIDTIDVEAEYPSEKDEEVAGKSFEEEKEELKEEEKIEEPKEVTSEDAPNIEQTPN
                     DKKDE"
BASE COUNT         2739 a         2190 c         1930 g         3535 t
ORIGIN      
        1 tagtcaacaa agtcaagatg ttttttcaaa aaaatttaat ttcttgatga gcattttgcg
       61 tttgtttaac tggaacgttt ataaatatat catgttttta tagggattgc aagcatattt
      121 tgagaaaaag tttctctttg gcaaatttgt ttttttctga gaaaaaaaca aaatccagaa
      181 ccgatataat cagctctgga tttttaatta gtcgcggtgt ttcatagttg ggaataatag
      241 gatatcacga atagacgggg catctgttaa tagcattact agacgatcga tacctattcc
      301 aagtccacca gtcggcggta gaccgtattc taaagcttca aggaaatctg catccattcc
      361 gtgcgcttca tcattacctt gctcacgttc tttcatttgc gcttcaaaac gctctctttg
      421 atcaattgga tcgtttaatt ccgagaatgc atttgcatgt tcacgaccaa cgataaataa
      481 ttcaaaacgg tcagtaaaac ggtcatcttc tttgtttttc ttcgctaatg gtgaaatttc
      541 caccggatgt ccgtaaacaa aggttggttg aataagcttt tcttctacgt atgtttcaaa
      601 aaactcatta agaatgtgcc cgtatgtcat gtgctccgtt actggcacat tatgtttttt
      661 agctagttcg cgtgcttctt catcggaagt tacgttccag aaatccactc cgacatattc
      721 ttttacagca tctgccatgt ggatacggcg ccagtttgga gttagatcta cattgtattc
      781 accgtatgtt atttctgttg ttccatttac ttgtttgcat actgtagata ctaaaccttc
      841 taccaaatcc ataacatctt cgtaatcttc gtatgctgca taggattcta acattgtaaa
      901 ttctgggtta tgacgcgtgg aggttccttc attacggaaa acgcggccga tttcgtatac
      961 tttatccatc ccaccaacga ttaggcgttt taagtgtagt tctaaagcaa ttcgtaaata
     1021 taattccata tcaagtgcat tatggtgcgt aataaatggt tttgcagcag caccaccagc
     1081 aattgtatga agcactggag tttctacttc taggaatcct tgattatcca tgtaatcacg
     1141 agtgtatttc aagattttac tgcgcatcac aaaacgattt tggctttctt cgtttgtaat
     1201 taagtctaaa tagcgttgac gatagcgttg ttctacgtct tttaagccat gatatttatc
     1261 aggaagtgga cgtaatgatt tggaaagcaa agtgaattcc gttgctttaa cagaaagttc
     1321 acctgtatta gtacggaaaa tagtcccttt tataccaata atgtcaccta gatccgctaa
     1381 tttgaagact gcataagcat cttcgccaat tgcatcttta cggatataga tttgtaattg
     1441 atggaaacgg tcttgaatat gtgtgaaacc tactttacct ttcacacgtt tcgtcataat
     1501 acgacctgct acagaaactt caatagcagc ttcttcaagt tcttcttttg atttatcagc
     1561 gaattttgtt tcaatttctt ccgggctgat ggaacggatg aatttttcgc caaaaggatc
     1621 tatgccttct tcgcgcaatg tgtccacttt ttcgcgacgg acgatgagtt ggtcatttag
     1681 ttcttcatga ttctcgttac tcatataggt acactcctat tctattcatt tctacagatg
     1741 tttccattat acgctttttt ggtctggttt ttctagtata aatttaaaaa ttgccccgaa
     1801 atctcgaggc aatactaatt agtcttgttt cgctaatgct ttttcttcat attgaagaac
     1861 aaattcattt aaaattgctt ccatctctga ttgttttgtc gcttggttag cagccacttt
     1921 cgcgcgagtg cttccgcgag ctccttttag ataataagct gcgtgttgtc taaactcgcg
     1981 aactgcaatg ttttctcctt ttagctcgac taggcgatta aggtgaagca tggcagtttg
     2041 cattttttcg cgtggttctg gttctggaag aagttcgcct gtttctagga atttcaccgt
     2101 gcgataaatc atccatgggt ttccaagtgc agctcgacca atcattactc catctgctcc
     2161 agtatgttct aaaattcgtt tggcatcttc tggtgttctc acgtccccat ttgccatgaa
     2221 cgggattttc agttcgcgtt ttacgtctct aagcacatcc cagttcgcgc taccttcgta
     2281 catttgcaca cgagtacggc cgtgcattgc aacagctgca gctccggcac gttcagcagc
     2341 aagtgcattt tcgatagcaa agacatgttc ttcgtcccaa ccaatacgca tttttactgt
     2401 taccggttta tcaacagcgt ccactacagc agctaccatg tcatacactt tatttggatc
     2461 aagtagccat ttcgctccag cttcacattt gataattttg tttaccggac agcccatatt
     2521 aatatcaata atatctgccg ttgtattttc agctacgaat ttcgcagctt ctacaagcgt
     2581 ttctttctca ccaccaaaaa tttgtaagct caatggtttt tctttttcat caatatatag
     2641 catatcaagc gttttagcat tgcggtatgc gattcctttg tcgctaatca tttcacagca
     2701 aacgagacct gctccgaatt ctttgaccgt taaacggaat gcggaattgg atataccggc
     2761 cattggcgcc acaactactt ggtttttaat ttctacgtta cctattttaa acattaatgg
     2821 taaacccctt cctcttaaat tgcgctagtg atatgttatc ataatcagtt ttttctgcaa
     2881 gtgccaattt taccagttga cttgattttt tattttccga acaccttgtt cttccaaaat
     2941 ggctggatta tctacaagat tgcttttttc tggtgaaatc tctattaatg gaatcagcac
     3001 aaaagcgcgt tctttcatat aaggatgtgg gattttcagc ttttctgtat cgattttaac
     3061 atcatcatat aataaaacat cgatatcaat gagtcgcgga ccccacttaa ataatcgaac
     3121 tcgccccaat tcaagttcga gcgcaaggca aaaatctagt aaatcaactg gcggaaagtc
     3181 cgtttcaatt tctacagcga tatttaaaaa tgccgcttga tcttcgtaac ctactgcgtc
     3241 tgtttcgtat acactagata cgttggtaat tttaatttta tctgaagcag ctaaaccact
     3301 tagtgcgtca tttaaatttt ctaaacgttc gccaaggttt gtaccaattg atagaaacgc
     3361 cttagccatt caaatcactt tttttacgtt caatttccac tgcaacagaa tcataatgtc
     3421 ccggaatcgg aggatttggt ttaataagtt ttacagtcac ttcttctaat agaggataac
     3481 cagttaaaac ttccgttgca attttttcgg caagcgcctc gattaatttg aatggcgttc
     3541 cttccactat ttcttttacc gtttcataaa cttctgcata gctgactgtg tcgtctacgc
     3601 tatccgatat tcctgctttt ttagtagaaa ggccgagaat aagcgatact ctaaacgttt
     3661 gtcctagttt tgtttcttcc gccaaaactc catggtatcc gtaaaacact aattcattta
     3721 aataaatttt atccaactaa agcacctctt tataattttg taatatctaa tttgccagta
     3781 atcgcatctg tcattcgtac catgcgcgca atgggaagta catcgtgtac acgagtaatt
     3841 gtgcaacctt tcgaaaatcc gtaaactgta gttgctccag ttccttccat tctatcctct
     3901 ggagtagttc ctaagacgag accaattgtc gactttctac tcgtaccaag taaaacctcg
     3961 taaccaagcg ccactatctc atcaatgcgt cgtaacactt ctaaattctg cgcaggcgtc
     4021 ttaacaaaac cgaaacccgg atcaagaata atatgttcat ctggcacgga tgccgcttta
     4081 gcaattgcaa cactttctaa taagtctttc ttcacatctt ccagaaaatt atcgtattgc
     4141 gtgttttctc ggttgtgcat caaacaaatt ggcacgttat atttcgcagc tacttccgca
     4201 attttcggtt cttttttggc accccattga tcatttatca tattaactcc tgctaaaata
     4261 gctttttcag ccacttcggc acgccaagta tcaacagaaa tccatatatc cggaagtttt
     4321 gtcctaacag ctttaatgac aggaataatt cgattaagtt cttcctcagg cgttacctct
     4381 gaaaaaccag gccgagtaga tattccacca acgtcaataa ttgctgctcc atcttctgcc
     4441 atttgtaacg ctcgagccac agcttcttcc acttgcatat atttcccgcc atccgaaaaa
     4501 gagtctggcg taacattcag tatccccatg accataccta agtgatccct tttccacttc
     4561 ttcaagccca aacacctctt tccgagattt attatagcag aattcagtga ttttagcgca
     4621 caaaaaaacc gatgcggaaa agggagtaaa ccgcatcggt caaaaaggga gtttgggatc
     4681 ttcattctaa aaagggggga gaagaatgaa aatgttttgc ttgttgttag cttatgacta
     4741 tatattaacc aagtttttgg tggatatgct gtgatttttg ttaaagtttc atgagatttt
     4801 tcggtttttc ttttcatttt ttggtattaa aaaaccagtg tggaaaaagg gagtaaacca
     4861 cactggtcaa aaagggagtt tgggatcttc attctaaaag gggggagaag aatgaaaatg
     4921 ttttgcttgt tgttagctta tgactatata ttaaccaagt ttttggtgga tgcgctgtga
     4981 tttttgttaa agtttcatga gatttttcgg tttttttctt catttttttc catgaaaaaa
     5041 ccagtgtgga aaaagggagt aaaccacact ggtcaaaaag ggagtttggg attttcattc
     5101 taaaaagggg aaagaatgaa aatgttttgc ttgttgttag cttatgacta tatattaacc
     5161 aagaaaagaa agtttccgct gtgcgtttga ttagaaaata gtaagaaatg catttatttc
     5221 ttttcataaa aaaagaacct agaaaatcta ggctctctga ttattaatct tcaaaattat
     5281 aaagaggtgt gcttaggtag cgttcgccgt tacttgcaac gattgctagt acttttttgc
     5341 cagcaccaag ttcttttgca aggtctagag ctgctttaac agttgctccg gaagaaatac
     5401 ctactaagat accttctttt ttcgctactt cacgtgctgt ttctagagca tcttcacttg
     5461 aaacttttag aatgccgtca tacacttttg tatctaatgt atccggaacg aagcctgcac
     5521 cgataccttg gattttatga ggtgatggag aaccaccgct aagtactggg gattcttctg
     5581 gttcaagagc atagatttta acatctgggt agttcttttt aagtacgtgt cctacaccag
     5641 ttactgttcc acctgttcca actcccgcga tgaaagcatc taagccatct ttaccgaaag
     5701 cttcaacgat ttctggtcca gttgtttctt catggacagc tggatttgct gggttgtgga
     5761 attgttgtgg aacaaaatag ttattttctt ttgcaagctc ttccgcttta gcaattgcgc
     5821 ctttcatgcc gtctggacct ggtgttaaaa ctaattttgc accgtaagct tgaagtaatt
     5881 tgcgacgttc taagctcatt gtttctggca ttacgaaaat cgcttggtag ccttttgctg
     5941 ctgctaccat tgctaggccg ataccagtat tcccactagt tggctcaatg attgtatcgc
     6001 ctggttttaa tgcaccagat ttttcagcgc tttcgatcat cgcgttagca atacggtctt
     6061 ttacgctgcc acctggattt tggaattcta attttacgta tacatccgcg cttcctgctt
     6121 ctggtaaacg attaagtttc acaataggtg tctttccaat taaatcagtg attgaatttg
     6181 caattgtcat tattaaagca ctcctatcta ttttaggtct ttcatctagt ttaattaatt
     6241 ccgacctgtt ttgtcaagtt taacctcttt taaaaaggag caaccaatta ggtgctcctt
     6301 tttctttatt tagcttcttc gtatagtttt tctaattctt cttttgaaaa atcgtaagtg
     6361 ttacgacaaa aatgacattc tgcttctgcg ccgtgatcct cttctatcat ggaacgaatt
     6421 tcttcttttc caagtgaaat tattgcactg ccaaagcgtt ctttggagca gttacattca
     6481 aaggaaacgg ggattttttc taagatttgt agtttatctt cgccgcctgc aagtttagct
     6541 aaaatcgatt caggagtttc gcccgcttca atcattctag aaactgttgg tagagccgtc
     6601 agattttttt cgatttcatc aatgatttca tctgtcgcac cagggagtaa ttgcaacatg
     6661 aaaccgccag ctgcttcgat tgtatcatct gggttaacaa gtactcctac accaacggag
     6721 gaattgattt gttcagatgt tgctaggtaa tacgtaaaat cttcaccaat ttcacctgaa
     6781 acaattggcg tttgtccggt gaaattttct ccaaagccta aatcttttac aactgaaagc
     6841 attccggatg ttccaacgcc gcggcggacg tcaagttttc cagcttcatt tagttcgctg
     6901 aagtgaacgt gtggatttgt tacgtatcct ctgatttgac cttgcgcgtt actatcagct
     6961 acgattggac cgattgggcc gtcgccttcg atttttacag ttattttttg gtcttctttt
     7021 tgcattgctc caaggaaaag tgttcctgtc atcgttctac caagtgcggc ggatgagacg
     7081 gaccatgtat catgtcttct ttgtgcttct ttgattgttt cggttgttac tgctgcatat
     7141 acacgcgcca tgccatcgta ggctaacgct ttaactaaat aatcactcat tatataaaac
     7201 tccttttatt tttctgtagt tggtttgttt cttctatata gaagttctag accttttaat
     7261 gttaaaaatg gatctaaaat atctactgca gaagattttt ctgttatcat ccgagcgagc
     7321 ccgcctgttg caactactac tgggcttgcg ttggattgtt ttttgatttc tgcgataatc
     7381 ccttcgcatt ggccgacgaa accataaaag atgcccgctt gcatggatgc cacggtggat
     7441 ttgccgatga tttggtttga ttcagcaata tctacgcgtg gtagtttagc agcgcggttg
     7501 tatagagctt cggtcgaaat cataatccct ggagcgatgg cgccaccttg gtatacccct
     7561 gattcatcga tatagcaaaa tgtggtcgca gtgccaaaat cgactacgat aaccggtgtc
     7621 ccgtattctt ctgatgctgc tacggcgttt acgattcggt cagatccgat ttcgcgagga
     7681 ttatcgactt tgaggtttaa gccggttttt attcctggac caacgattaa tggtcggata
     7741 ttaaaatagc gtacgcacat tgtttccatt gcgtgcataa tcggtggaac gacggacgaa
     7801 ataataattc cttgaatatc agaaggagtt aaattcgcat aagaaaaaaa gttcaagact
     7861 gtcattccta attcatcgga tgtgcggtga cgatctgttg tcatgcgcca atgtttcaga
     7921 agtttttgtt tttcataaac tccgacagta cagttagtat ttccaacgtc tattacaagt
     7981 atcataagtt taaataccgt cctttagaag atttttctaa cgtatcataa catgttttat
     8041 aggaaaatcc gaataatata gcttcaaaaa agagactggg gaagcccagc ctctttgatt
     8101 ttattcgtct tttttatcgt ttggtgtttg ctcaatgttt ggagcatctt ccgaagttac
     8161 ttcttttggt tcttcgattt tttcttcttc ttttaactct tctttttctt cttcaaaaga
     8221 tttacctgct acttcttcgt ctttttcgga aggatattct gcttctacgt caatcgtatc
     8281 gatatctgga ggcattacac cgtcatcaaa tagggaacga atttggcgag catctaaagt
     8341 ttctactttt agtaatgttt ccgcgataag tttgtgttgt tcttggtgtt ctgtaatgat
     8401 tgttttagcg cggtcataac agtagcggat taagctctga acttctgtat caatttcgta
     8461 ggcgatttta tcggaatatc ctttgtcgct accgaaatcg cggcccataa atacttgacc
     8521 gttaccagaa gtgaattgaa gtggtccaat cttgtcactc ataccccatt cagttaccat
     8581 gcggcgagca agttcggttg cacgttcaaa gtcattactt gcaccagttg ttacttcacc
     8641 aaaagtaact tcttcggcta cgcgtccacc gagtaaacca gtgatacggt ccattaactc
     8701 agctttcgtc attaggaagc gatcttcttt tggtaacatt acggcataac caccagcttg
     8761 tccacgagga acaatggtaa ctttatgcac aacttccgct tcatcaagta ccattccgac
     8821 gataacgtga ccaccttcat gatatgcgac tgtgcggcgt tctttttcag agataactcg
     8881 atttttctta gctggtccgg caattacgcg gtcactagct tcatcgaggt cactcatatc
     8941 tatttctttc ttatcggaac gtgcggcaac gagtgctgct tcattcagta agttttctaa
     9001 atcggcacca gagaatcccg gtgtacgttg agcgattgct tttaaatcaa cacttttagc
     9061 aagtggtttg ttacgagcat gaacgcgaag tactgcttca cggcctttta cgtctggacg
     9121 atcaaccatg atttggcggt caaaacggcc tggacgaaga agtgctgggt caagtacgtc
     9181 tgcacggtta gttgctgcaa taatgatgat accttcattg ccaccgaaac catccatttc
     9241 aactagtaat tggtttaggg tttgttcacg ttcatcgtga ccgccgccca ttcctgctcc
     9301 acgttgacga cctactgcat caatttcatc aatgaaaatg atacatggtg catttttctt
     9361 cgcattttcg aataaatcac ggacacggct tgcaccgaca ccgacaaaca tttctacaaa
     9421 gtctgaacct gagatagaga agaatggcac gcctgcttca ccggcaaccg cacgagctag
     9481 caaggtttta ccagtacccg gaggacctac taaaaggaca ccttttggaa tacgagcgcc
     9541 gaggtccgca aatttacgcg gatcttttag gaattctact acttcaacaa gttcttgttt
     9601 ttcctcgtct gctccagcta catctgtgaa gcgaactttc ttcttgtcgt cgttgtaaag
     9661 tttggcttta cttttaccaa agctcattac tttaccaccg ccgccacctt gagactggct
     9721 cattaggaag aagaagagga tgaagataat tacaaaaggt acaatagaag ttaggaatgt
     9781 aacccaaccg ctgttttgtt tggcaggtac tattgttgtt ttcacgtctt ctttatcaag
     9841 cgttttttgc aaatcgccta gtgaagtatc gctgtttaaa gcgtatgttg tgaaagcagt
     9901 gctgcttgtt ttgctttgtc caagacccgt ttttttatcg tcggaacttt tatcgctaga
     9961 tttaaattcc ccattgattg tataaacact acggtctggc tgtatttcta cggatttaac
    10021 tttaccatct tctaacttac tcacaaattc tgaatagcta atatctttgg ctgcctcttt
    10081 gtttgagtta aatgaagcaa caatcccgat aataacaagg aatattatga cataaaatat
    10141 cgcatttcta aaaaacctgt tcattcctta cctcctccca cgcaagagct tggattctta
    10201 ctttttctgg acttttaccc ctttaaaagt tgtttttggc taatagcaga tttagaaaca
    10261 attttttctt cccctgatta ttaaaaaaca catccgtttc gcttttctct tacgaagtta
    10321 ttctattatt aatatagatt ttttaatatt tattgatact attttcacct tcgaaaacta
    10381 agactaatga tagc
//
LOCUS       DABQVC010000104        10355 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.104,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000104 DABQVC010000000
VERSION     DABQVC010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10355
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.104"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            646..897
                     /locus_tag="IBJ56_001809"
     CDS             646..897
                     /locus_tag="IBJ56_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418063.1"
                     /translation="MKTIANEYQEYITERIRLGDNGIKLTAYSFENGYQARVIENLDS
                     NFVSLVLVKSHDGKNSIKDILLELTNEQLIEKLEEIKNL"
     gene            1203..2015
                     /locus_tag="IBJ56_001810"
     CDS             1203..2015
                     /locus_tag="IBJ56_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HAM3418064.1"
                     /translation="MKRILNYPGSKWSLADLIIDNMPEHKSYLEPFCGSCAVFMNKQK
                     ATLETINDLDSRLVNLFKAMRDNPEKLQYLIMHTLYSREEYMLSHEISSDSLEDARRM
                     AVRLWFAVGGKTNANVGFRKNVSWNGPYNAYEWNDMYNRIGIAAARLKDAQIENVDAI
                     KLIEQHNDKDTLIYCDPPYIPTSLVSPHYQHDFSLEQHKELLKVLKNHEGKVMLSGYE
                     SELYKQELSDWPALKTMTKVGITSEKKSDRQEIIWCNFEPPMQLNLFKEEQA"
     gene            2012..2611
                     /locus_tag="IBJ56_001811"
     CDS             2012..2611
                     /locus_tag="IBJ56_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HAM3418065.1"
                     /translation="MKFRKGDKVEFIWSGKLKQGVVTEIEETKNAISYQIKYSGDMGM
                     TWLDERDLIAPAPVLKVPQFVADWMSHCKQREYDLACLLDYEDSDMSAEMNDWLCLEE
                     SNQWLLARAWMDGYEVKKEPLYYVRLPYSSCCNATEKETNYAYIIVNKINNETQPTMS
                     KPVSRYWKAELTEAQIKDMPGGDIYWRFAVLVEEAEGEA"
     gene            2771..2953
                     /locus_tag="IBJ56_001812"
                     /pseudo
     CDS             2771..2953
                     /locus_tag="IBJ56_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743918.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2953..3351
                     /locus_tag="IBJ56_001813"
     CDS             2953..3351
                     /locus_tag="IBJ56_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418066.1"
                     /translation="MRDIEYRAFVKETKKMLPVTDLCFNETESVGVSGCGDANCTLCV
                     DWYGFDDVVLMQYTGLKDKNGKKIFEGDIVDISVYDRLDWSSIKGKVVFLNGAWLVED
                     VGHFAITLQSETNEIEIIGNVHENLGLWEA"
     gene            3525..3815
                     /locus_tag="IBJ56_001814"
     CDS             3525..3815
                     /locus_tag="IBJ56_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418067.1"
                     /translation="MILYGVVTYDEATEWTTDLLTAKKWLENAKQGFYDGEVDEDYYV
                     ALIKLDVEAFLYDLYDKETDLSDQLHDEAETMEEYWLILDDDGTYMVKEVTE"
     gene            3812..4105
                     /locus_tag="IBJ56_001815"
     CDS             3812..4105
                     /locus_tag="IBJ56_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015076541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418068.1"
                     /translation="MIKRIKDLNHLKSIHTNDKRKYKMGEKAFACTTNPLFFIAKSGE
                     KVVTNEWFVNSTENELIFDIKRNRWVNMEMYEDGISTVTDDIYYFENDKEVTE"
     gene            4294..4728
                     /locus_tag="IBJ56_001816"
     CDS             4294..4728
                     /locus_tag="IBJ56_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003747266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418069.1"
                     /translation="MEEKRMVEINGIKMEIDMRTAVRVDEFKVGDNIKVLDKNYSNQK
                     IHDGVIVEFLNFKDLPTIQIAYFERDWSGSEIKFLNINSESDSYEILPASAHEFELEK
                     SAVVEKMKLEIESKKEEAARLQSKLDWFEKFYGKYFAKGEME"
     gene            4725..5000
                     /locus_tag="IBJ56_001817"
     CDS             4725..5000
                     /locus_tag="IBJ56_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418070.1"
                     /translation="MKNYHVVISANEWLIDQVFVDFTKYDVSFSDLKTAILKRVGNIC
                     SVNRVNKNKVKAKQIIKNAKSIDEMTYQINTQTDFHIVVEEATGWQQ"
     gene            4988..5374
                     /locus_tag="IBJ56_001818"
     CDS             4988..5374
                     /locus_tag="IBJ56_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418071.1"
                     /translation="MATITYQLHSEREESTYKTVEEAMLSALKLISSDDVAYIYENHL
                     GENGELEKEVLLTTMNVKQKPIAERFRVGQKVICNKILGLPGYDGAIGLIVDIVSDVA
                     EVAVNQCEEEEFSPIVFLTDLEEEIK"
     gene            5375..5797
                     /locus_tag="IBJ56_001819"
     CDS             5375..5797
                     /locus_tag="IBJ56_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009918381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418072.1"
                     /translation="MKKYRIIDVESGCPILLTGITSTRLSWAIVRPSEETVLEEKLFA
                     ERLIRFLEEQNAMYKFRVEEILEKWFVEYVNDLGIVRYLFAIDNNTQTRQLRFSWTKE
                     NDEMYTTVSLAQAEAICTLVSTCERYKNAKLTVKEVLN"
     gene            5964..6347
                     /locus_tag="IBJ56_001820"
     CDS             5964..6347
                     /locus_tag="IBJ56_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418073.1"
                     /translation="MSIIAGDKVEVQDRTGVAELCVDGEQFHVLMNNNDLLTVEDEDG
                     FSSFNIPATQVKKVKVDSDVKLINELYDQSDSVNFYIYDVDIDKAILFVSNVAKAEFN
                     EANNEKWFSATNGKITAVAFLKGDD"
     gene            6349..6828
                     /locus_tag="IBJ56_001821"
     CDS             6349..6828
                     /locus_tag="IBJ56_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siphovirus Gp157 family protein"
                     /protein_id="HAM3418074.1"
                     /translation="MSTLYSIQGKYQQLLNLAEQLDPELLKDTLESIDDELETKAENV
                     AFVIKELEGQSLILEKETKRLAERKNTINNNVKRLKQSLFDAMITANKQKIKTNLFTL
                     DIRKNPPSLIVEDESKLLNYLIEQPKKLDKTKLGDDLKKGIEVPGAKIIQTERLQIR"
     gene            6841..7530
                     /locus_tag="IBJ56_001822"
     CDS             6841..7530
                     /locus_tag="IBJ56_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAM3418075.1"
                     /translation="MEFIQSEEMKRSEYFNIMIYAKPGAGKTTTIKYLKGKTLMLDCD
                     GTSKVLSGLPDITIATLNPRNPVQDMADFYGYAKTHADEYDNVVIDNLSHYQKLWLMF
                     NGRNTKSGQPELQHYGIFDTHLIDMISVFNNLPNTNIVYTAWENTRQVQLESGQLYNQ
                     FLPDIREKVVNHVMGIVPVVARLIRNPETGQRGFILTENNGNFAKNQLDNREFALQED
                     LFKIGDIDVKA"
     gene            7594..8850
                     /locus_tag="IBJ56_001823"
     CDS             7594..8850
                     /locus_tag="IBJ56_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HAM3418076.1"
                     /translation="MRRCSLWIGAGKSVILSEIIRMTTHNKNHVLFLVHRKELIDQIR
                     NTLIMNEVDMEFVKLGMVQTIVGRLNKTSEPSLIIIDESHHVLANSYKKIIHHFSNAK
                     VVGFTATPVRINGGGLGDINDTLIEKVNVKWLIENQFLAHYKYYAPEIVQTETLNVKR
                     TGEFDMTGLDDQFNKRMIWGDVIKHYQKLADGEQAILYASSLYQSEKMAASFNSVGIS
                     SAHIDGKTPKNIRDDIIKRFREGEIKVLCNLDLIGEGFDVPDCSTVIMLRPTQSLSLY
                     IQQSMRGMRYKQGKTAIIIDHVGNVKRFGLPDMERTWSLAPRKGSNSTKAEAPVKICK
                     ECFMTVSQTAKKCEHCGYEFKVEVKPIQIDEGAELQEITEAVFKVNYSSPDECKNMKE
                     LYEYAKEHNYKNGWAFHQGKARGFIK"
     gene            8875..9357
                     /locus_tag="IBJ56_001824"
     CDS             8875..9357
                     /locus_tag="IBJ56_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011702027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF669 domain-containing protein"
                     /protein_id="HAM3418077.1"
                     /translation="MFKVDHNDIFTNGVENGTYEVVLYNANEDATKSGAEFINIDLII
                     RNDINQKFQNAHVFHRVWKSKTTNEYNPTALNTIAKAIQLPNGKDYNTVNELLQDLLT
                     KTCQVTVKNEESEYNGQIYKNLNVKAWAESKITGPLQHKFKMKETSEPLVINEDDLPF
                     "
     gene            9380..>10355
                     /locus_tag="IBJ56_001825"
     CDS             9380..>10355
                     /locus_tag="IBJ56_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAM3418078.1"
                     /translation="MYEQIPYELKKLKQWCAFQLVWDEERGKNKKIPMNANNGSYGNS
                     VDERTWADFETALASLEKFQFDGLGFYFKAPYFGVDIDGIQDEIQDYLYGNTDNIAGE
                     FIQTLASYTEYSVSGAGIHIIAKGDFPEGGRRKGNIEMYPDGRFFVMTGQVIDNYRQV
                     NEATSAIQYLHTKYIGTNEVRQTNNLHSTVDLPVSDIIHRAEQSKQGSQFKTLFDGLW
                     DGLYPSQSEADLAFANMLAFWTGCNSEKMDEIFRSSGLYRQKWDQKRGAQLYGEMVIN
                     KAITNTSEIYQPGSDLEGYSISIKKQNNTARIVYGLDDTGNAERFRDKF"
BASE COUNT         3881 a         1421 c         2230 g         2823 t
ORIGIN      
        1 gagttacaaa ataatattta aggtaattat atcacagaaa tggagatatg agaatgaaga
       61 aatttttaaa tgaacatgaa agtaagctac tagtatttat gttttgtttt caagtaggtg
      121 cattattatc agtcacatat attatcgctg aatggataaa aatatttttg aaatgaggtt
      181 ttgcaatgaa gcttttacga tttttcggac tagtcagtgt agatgaaaac ggaaatgaat
      241 atattgaaaa atcagacaga aatacattaa tttgtttagc tttgacagtg ttaattgcat
      301 tcgttgcagg aatcggcgga ttgatattaa atggctgaat taataatgat tgttgcatta
      361 atactactat taatgctgct tgcaaggagt gatagagaat gaatgtagaa aatccgatga
      421 tagttgatga ttactgggat gatggatttc gacactgagg agcgttgata gatgaatgta
      481 gaaaatacaa tcgatttatg cagattaaaa gaaatgttgt tatatcaaaa agaaaaaacg
      541 caaagaaatt gattttcaga ttgagatttt agagcgattg ataaatgaga catcaaagaa
      601 agataacaaa gaaactcaaa tatggctgag caaggagtta aacacatgaa aacaatcgca
      661 aatgagtatc aagaatacat cacagaaaga ataagactag gtgacaacgg tataaagcta
      721 actgcttata gttttgaaaa tggctatcaa gcgagagtga tagaaaacct tgactctaat
      781 tttgtatcac tcgtacttgt aaagtctcat gacggaaaaa actctataaa agatattttg
      841 cttgaattaa cgaacgaaca actgattgaa aagctagaag agataaagaa tttataaatt
      901 aagaagttag aaaggatgtt tttcttgggg aaatattatt ggcatgtgtc aaggcttggt
      961 gggaaaccga tagaaattcg acactataag cacattacaa aaatgtataa atttattttg
     1021 cgaaatcctg ctatgttcaa agacaaaact ttaacgattt atgatcacgc aaaaccagtt
     1081 acaaacatga cgtttaacga aattaagtat agagctagtt tgaatttatg tgaaacggta
     1141 gaacgaaagt atgtgttagg acttaagcaa aggcttacgg aggaacagaa ggaggctaga
     1201 aagtgaaacg aatacttaat tatccgggca gtaaatggag tttggcagat ttaatcattg
     1261 ataatatgcc ggagcataaa agttatttag aaccattctg cggatcatgc gcagtcttta
     1321 tgaacaagca aaaagctact ttagagacga taaacgattt agacagtcga ctagttaatc
     1381 tttttaaagc aatgcgtgat aatccagaaa aactgcagta tttaattatg cacacgctgt
     1441 attctcgtga agagtatatg ctttcgcatg aaatatcaag tgattcatta gaagacgcta
     1501 gacgcatggc tgtgaggctc tggtttgctg ttggtggtaa gaccaatgca aatgttggat
     1561 ttagaaaaaa cgtgtcttgg aatggtcctt acaacgcata tgaatggaat gacatgtata
     1621 accgaattgg aatagctgca gcaagactga aagacgctca aatcgaaaat gtagatgcaa
     1681 ttaaactgat tgaacagcat aacgataaag atacactgat atattgtgac ccgccatata
     1741 ttccgacatc gctagtaagt ccacattatc agcacgattt tagtttagaa caacataaag
     1801 agttactcaa agtgcttaaa aatcatgagg gcaaagtaat gttaagcggc tatgaatcag
     1861 aactatataa acaagagtta tcagactggc cagctcttaa aacaatgaca aaagtaggca
     1921 ttacatcaga aaagaaatca gataggcaag aaattatttg gtgcaatttt gagccaccta
     1981 tgcaattaaa tctttttaag gaggaacaag catgaaattt agaaaaggcg ataaagtaga
     2041 gtttatttgg tcaggtaaat tgaaacaagg tgttgtaact gaaatagaag aaactaaaaa
     2101 tgctatatcc taccaaatta aatatagtgg agacatgggc atgacttggc tggatgaaag
     2161 ggatttgatt gcgccagctc cagttctaaa agtgccacag tttgttgctg attggatgag
     2221 tcactgtaaa caaagagaat acgatttagc ttgtttgtta gactatgaag attctgatat
     2281 gtctgctgaa atgaatgact ggttgtgtct agaagaaagt aaccaatggc ttttagcgcg
     2341 agcgtggatg gacggctacg aagtcaagaa agaaccgctt tattatgtta ggctaccgta
     2401 ttcgagttgc tgtaatgcta ctgaaaaaga aacaaattac gcgtatatta tcgtaaataa
     2461 aattaataat gaaacgcaac caactatgtc gaaaccagtt agtagatatt ggaaagcaga
     2521 attgacggaa gctcaaataa aagatatgcc cggaggagac atatattggc ggtttgctgt
     2581 tcttgttgag gaagcggagg gtgaagcatg acagtagcag aattaatcga agcactgaat
     2641 agacacgaca aacacttgcc tgttttcata ggaacttcac ttttatgtga ggttgaaaag
     2701 gattcgttat gtaatgaggt cattgacgtg cccgtgttgt ttttaaaaac tgcaatagag
     2761 gtgcaatggc atgagagcga ttaaattcaa aggaaagcgc aaagacaacg gcaaatgggc
     2821 gcacggatac tttgttatcg atgactgtga ttgtgcatat attataacag ttgagaatga
     2881 tggatatagc gctattccgg taatcaagac gtgttatgag gttgatgctg aaactattag
     2941 cgaggtggag aaatgagaga cattgaatat agagcgtttg taaaagaaac taagaaaatg
     3001 cttccagtca cagatttgtg ttttaacgaa acagagtctg taggtgtaag tggttgcgga
     3061 gacgcaaatt gcacgctgtg cgtcgactgg tacggctttg atgatgtcgt gctgatgcaa
     3121 tacacaggct taaaagacaa aaacggcaag aagatttttg aaggggatat agtcgatatt
     3181 agtgtttatg atcgtcttga ttggagctca atcaaaggca aggttgtatt tttgaatggc
     3241 gcgtggctag ttgaggatgt agggcatttt gcgataactc tgcaatctga aacaaatgaa
     3301 atcgaaatta tcggtaatgt gcacgaaaat ttaggattgt gggaggcata gtaaatgact
     3361 ttaagagaag cattagagaa gcacacaaga catatcatgt tttgtggcat gtgcgagtgt
     3421 ggagaagcta aatatgattt gatcgtggac ggcgatttga cgtatccgcc tgtacatgaa
     3481 tcaactattt tggaagtaaa tccggatttg ttggaggtgg cggaatgatt ttatatggag
     3541 tagtaacata tgacgaagca acagagtgga caacggactt gctaacagct aaaaaatggt
     3601 tggaaaatgc taagcaaggt ttctatgacg gagaagttga tgaagattac tatgttgcgt
     3661 taataaagtt agacgtagaa gcattcttat acgatctata tgacaaagaa acagatttga
     3721 gtgaccagtt acatgatgaa gctgagacaa tggaagagta ttggttgata ttagatgatg
     3781 acgggaccta catggtaaaa gaggtgacgg aatgatcaag cgcataaaag atttaaacca
     3841 tttaaaatct atccatacga acgacaagcg aaagtacaaa atgggagaaa aagcgttcgc
     3901 ctgtacaaca aatccacttt tctttatcgc aaaaagtgga gagaaggtag tcactaacga
     3961 gtggtttgta aattctacag aaaacgaatt gattttcgac ataaagagaa acagatgggt
     4021 caatatggaa atgtatgaag acggtatttc tacagtaaca gatgatattt attattttga
     4081 aaatgataaa gaggtgacgg aataatggca tttgaagaag aatttaagga agaaatagca
     4141 gaagcaaagg aaatggtagc aggacggtct acagaggaac tatttgacaa tttaaaagaa
     4201 atgaatcttg tcatacgtga acatacttac ggaatacaag tgattcttga tgagcttagt
     4261 agcagagaaa aataaaataa ggaggaaaag tgaatggaag aaaaaagaat ggtagaaatc
     4321 aacggaatta agatggaaat agacatgaga acagcggtgc gggtggatga atttaaagta
     4381 ggagacaaca tcaaagtgtt agacaagaac tattctaatc aaaaaattca tgacggagta
     4441 attgtagaat ttttaaactt caaagattta cctacgattc aaattgctta ttttgaacga
     4501 gattggtcag ggtctgaaat taaatttcta aacattaatt cagaaagtga ttcttatgaa
     4561 attctaccag cttcagcaca tgagtttgag ttagaaaaaa gcgcagtggt agaaaaaatg
     4621 aaactggaaa ttgagtctaa aaaagaagaa gcggcaagac tacagagtaa attagattgg
     4681 tttgagaagt tttatggaaa gtatttcgcg aaaggtgaga tggagtgaaa aactaccatg
     4741 ttgttatttc agcaaatgaa tggcttattg accaggtatt tgttgatttc acaaaatacg
     4801 atgtatcatt ttcagattta aaaacagcta ttttaaagcg tgtaggcaat atttgttcgg
     4861 taaatcgtgt gaacaaaaat aaagtgaaag cgaaacaaat tattaaaaat gcaaagtcaa
     4921 tagacgaaat gacatatcaa attaatactc aaacagattt tcatattgtt gtagaggagg
     4981 cgactggatg gcaacaataa catatcaact acacagcgaa agagaagaat ctacttataa
     5041 aacagttgaa gaagcaatgt tatcagcttt aaaactaata tctagtgatg atgtagcgta
     5101 tatatacgaa aaccatttag gggaaaatgg ggaattggaa aaagaggtat tgttaacgac
     5161 gatgaacgta aaacaaaagc caatcgcgga gcggtttaga gttgggcaaa aggttatatg
     5221 taataaaata ctaggattac caggatacga tggcgcaata ggcttaattg tcgacatagt
     5281 gtcagatgtt gcagaagtag ctgttaatca atgcgaggaa gaagaatttt ccccaatcgt
     5341 attcttaact gatttagagg aggaaataaa gtaggtgaag aaatatagaa ttattgatgt
     5401 agagagtggg tgtcctattc tactaacagg gataacatca acaaggttat cttgggcaat
     5461 agtgagaccg tcggaggaaa cggtattaga ggaaaaacta tttgcagaac gattaatccg
     5521 atttttagaa gaacagaatg ccatgtataa atttagagta gaagaaatac tagaaaaatg
     5581 gtttgttgaa tatgtaaatg atttagggat agtacggtat ttattcgcaa tagataacaa
     5641 tacgcaaaca cgacaactaa gattctcgtg gacaaaagaa aatgatgaaa tgtacacgac
     5701 tgtatcactt gctcaagcag aagctatttg cactttagta agcacctgtg aaagatataa
     5761 aaatgcaaag ttaactgtaa aggaggttct aaattgacaa aacaaatcat catcaacgaa
     5821 gcaaacagtt tgcttcacag aaaaagcaaa gaattgagta aatcaattat taaaacacca
     5881 aagtaccttg aaagattcgc gattggtctt gataaattat cccaagatat gtgggactat
     5941 aaaaacgaat tggaggcgat taaatgagta ttatagcagg tgataaggta gaggtgcagg
     6001 atagaacggg tgtagctgaa ttgtgtgtcg acggagagca gtttcatgtt ctgatgaata
     6061 acaatgattt gcttactgtt gaagatgaag acggattttc atcctttaac ataccagcaa
     6121 ctcaagtgaa aaaagtgaaa gtggatagtg atgttaaatt aataaatgag ctatatgacc
     6181 aatctgattc tgtgaatttt tatatatatg atgttgatat agataaagct attttgtttg
     6241 tatctaacgt ggctaaagcg gaatttaatg aggcgaacaa cgaaaaatgg ttttctgcaa
     6301 caaatggaaa aataactgct gttgcatttt tgaaagggga tgattaaaat gtcaacatta
     6361 tactcaattc aaggaaaata tcaacagttg ttaaatctag cggagcagct tgatccggaa
     6421 ctattaaaag atacccttga aagtattgat gatgaactag aaacgaaagc tgaaaacgta
     6481 gcatttgtta ttaaagagct agaaggtcaa tcgctaatct tagaaaaaga aacaaagcgt
     6541 ttagctgaac ggaaaaatac tattaataat aatgtgaagc gactgaaaca atcgttattt
     6601 gatgcaatga taactgccaa taagcaaaaa attaaaacaa acttattcac attagatatc
     6661 cggaagaatc cgccaagcct cattgtagaa gacgaaagca aactgctgaa ttacctgatt
     6721 gaacaaccaa aaaaattaga taaaacaaaa ttaggcgatg atttgaagaa aggtattgag
     6781 gtaccaggtg cgaaaattat tcaaacagaa agattgcaaa taagataagg aggggtttta
     6841 ttggaattta ttcaatcgga agaaatgaag aggtcagagt attttaatat tatgatttat
     6901 gccaaaccag gtgcaggtaa aacaactaca attaaatact taaaaggtaa aacgttaatg
     6961 ttagattgcg atggcacgtc aaaagtttta agtggtttgc ctgatatcac aattgcaaca
     7021 ttaaatccgc gtaatcccgt gcaagacatg gcagattttt atggatatgc aaaaacacac
     7081 gcggatgaat acgacaatgt agtaattgat aatttgagtc attatcaaaa gttgtggtta
     7141 atgttcaatg gaagaaatac taaatcagga caaccggagc tacaacatta cggaatattt
     7201 gatacacatt taattgatat gatttccgta tttaataact taccaaacac aaatattgtt
     7261 tacactgcgt gggaaaacac acgacaagtt caattagaaa gtggtcaact ttataatcag
     7321 tttttaccgg atattagaga aaaagtagtt aatcatgtga tggggattgt tccagtagtt
     7381 gcgagattaa tacgaaatcc tgaaactgga caacgaggtt ttatactcac agagaataat
     7441 ggtaattttg caaaaaacca gttagataat agagaatttg ccttacaaga agacctattc
     7501 aaaatcggtg atattgatgt taaagcttag agaatatcaa caagaaatta taaacgatgt
     7561 aaagggggct tttttacagg gatataatag accgtgcgtc gttgctccct gtggataggt
     7621 gctggtaaat cggtcatttt atcagaaata attcgcatga caacacacaa taaaaaccat
     7681 gttcttttcc tagttcaccg aaaagagttg atagaccaaa tcagaaacac actcattatg
     7741 aatgaagtgg atatggaatt tgtcaaattg ggtatggtac aaacgatagt tggacgttta
     7801 aacaaaactt cggagccttc gttaatcata attgatgaaa gtcatcatgt gttagcaaat
     7861 agctataaaa aaataattca tcacttttct aatgcgaaag tcgttggatt tactgcaacg
     7921 ccagtgagga ttaatggagg tggtttagga gatataaacg acacattaat cgaaaaagtt
     7981 aatgtgaaat ggttaataga aaatcagttt ttagcacatt acaaatacta tgctcctgaa
     8041 attgtgcaaa cagaaacatt aaatgttaaa cgaactggtg agtttgatat gactggtctt
     8101 gatgatcaat tcaataaaag aatgatttgg ggggatgtga ttaaacatta tcagaaatta
     8161 gcagatggtg agcaggcaat actttatgcc tcttcgctat accagagcga aaaaatggca
     8221 gcgagtttta attcagtagg catttcatcc gcacatattg acggtaaaac acctaaaaac
     8281 attcgtgatg acatcataaa acgatttcga gaaggtgaaa taaaggtcct ttgtaatctt
     8341 gaccttattg gtgagggttt cgatgttccg gattgttcca cagtgattat gctaagacct
     8401 acacaatcat tatcgctgta cattcaacaa tcgatgcgag gcatgcgtta taaacaaggt
     8461 aaaacagcta tcatcattga tcacgttggt aatgtaaagc gtttcggtct tccagatatg
     8521 gaacgaacat ggtccttagc acctcgtaaa ggaagtaact caacaaaagc tgaggcacct
     8581 gtgaaaattt gcaaagagtg ttttatgaca gttagccaga cagcaaaaaa atgtgaacat
     8641 tgtggatatg aattcaaagt agaagtaaaa ccaatacaaa tcgatgaagg agcagagcta
     8701 caagaaataa ccgaagccgt ttttaaagtg aattatagta gtccagacga atgtaagaat
     8761 atgaaagaat tatatgaata tgcaaaagaa cacaattata aaaatggatg ggcattccat
     8821 caaggaaaag cacgaggatt tatcaaataa aaaagcgaaa gaaggaattt aaaaatgttt
     8881 aaagtagatc ataatgatat tttcacaaat ggagtagaaa atggtacgta tgaggttgtt
     8941 ttatataatg caaatgaaga tgcaacaaaa agcggtgccg agttcattaa tattgattta
     9001 attattcgta acgacataaa tcaaaaattt caaaatgcac atgtttttca tcgtgtgtgg
     9061 aaatcaaaaa caacgaatga atataatcca acagcactaa atacgattgc gaaagctatt
     9121 caactcccaa atggaaaaga ctataacaca gttaatgaac tgctacaaga cctgttgact
     9181 aaaacctgcc aagttacagt gaaaaatgaa gaatctgaat ataatgggca aatttataaa
     9241 aatctaaatg taaaagcatg ggctgaaagt aaaattactg gacctctaca acacaaattt
     9301 aaaatgaaag aaactagcga accattagta ataaatgaag acgatctacc attctaaaca
     9361 gtgagaggag cgcacaaacg tgtatgaaca aattccatac gaactaaaaa aattaaaaca
     9421 atggtgcgct tttcaacttg tgtgggatga agagcgcggc aagaacaaaa aaataccaat
     9481 gaacgcgaat aatggttcat atggtaatag tgtagacgag cggacttggg cagattttga
     9541 aactgccctt gcttcactcg aaaaatttca atttgatggt ttaggatttt acttcaaagc
     9601 accgtatttc ggcgtggata ttgacggcat tcaagatgaa attcaagatt atctatacgg
     9661 aaatactgac aatattgctg gagagtttat tcaaacgtta gctagctaca ctgagtacag
     9721 tgtgagtggg gcaggtattc acattatcgc aaaaggtgat ttcccggaag gtggtcggcg
     9781 caaaggtaat attgaaatgt acccggatgg tcggtttttc gttatgacgg gtcaagtaat
     9841 tgataactac agacaagtca atgaagcgac atcggcaata caatacttgc atacgaaata
     9901 tattgggact aatgaagtaa gacagacaaa taaccttcac tcgactgttg atttacctgt
     9961 aagtgatatt attcaccgcg cagaacaaag caaacagggt tcgcagttta aaactctctt
    10021 tgatggtttg tgggatggac tatatccttc acagtccgaa gcagacttag cttttgcaaa
    10081 tatgctggca ttttggacag gatgtaattc agaaaaaatg gatgaaattt tccgttcaag
    10141 tggtttgtat cgacaaaaat gggatcaaaa acgtggagcg caattatatg gagaaatggt
    10201 tataaataaa gctatcacca acacatctga aatttatcag cccggaagcg atttagaagg
    10261 atattctatt tctattaaaa aacagaataa tacagcgcgt atagtttacg gtttagatga
    10321 tactggaaat gcagaacgtt ttcgggataa atttc
//
LOCUS       DABQVC010000105        10323 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.105,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000105 DABQVC010000000
VERSION     DABQVC010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10323
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.105"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            73..1392
                     /locus_tag="IBJ56_001826"
     CDS             73..1392
                     /locus_tag="IBJ56_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3418079.1"
                     /translation="MKIRKIAIAALSVVVAGSLLTACGGGNSKSDDNGKTKVTFWAAP
                     NPTQVKYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSAIASKTAPTMSENINRS
                     FAAQLADSKAIVPLNDVKGLDDVVKERNMSETMDSWKFSDGNQYVLPVYSNPILFAWR
                     LDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRWFDFFPLYD
                     AASKGNAFVEDGKLVADDKAGTELLTFMSELQKNKLLLASKATDPFETGTSIMADNGP
                     WTFPNWDEKFPELKYNENYAITAPLVPDNMANEENVATYADSKGVVMYAQATDKEKEA
                     AMDFLKFVYNDDKNDLKFLETTNLIPARDDATENETFTAFFKENPELEVYAANVPYSI
                     PAMDDAKYNDIQQIIGEEAWNPIVRGEKKPAKAWSDMKKAEDGVLQE"
     gene            1389..2267
                     /locus_tag="IBJ56_001827"
     CDS             1389..2267
                     /locus_tag="IBJ56_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3418080.1"
                     /translation="MKRRNNKLGWSFTSPYLIFTAIFFLVPLVWSIWLSVTDWNMMSP
                     EINFVGFDNFIKAFTSPAVQAAFFVTYKFLIVFVPMALIISMIVAVLVNGLPKFKGLY
                     LVAFFLPYLSSGVVTSLIVQGLLSYNSALNVFLRGHFGWDIDWLGTPMSALVIISLMI
                     AWKMSGYYALILISGLASINHEIYEAAAMDGSGRFRTFWKVTVPMLYPALFTVIVLAV
                     GVSFGIFTEVYQLTGGGPNFATNTWQMEIFNQAFVNLNSGYASAISLMAATVTFASIG
                     VIKKMLEKWGQRNGWT"
     gene            2254..3087
                     /locus_tag="IBJ56_001828"
     CDS             2254..3087
                     /locus_tag="IBJ56_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HAM3418081.1"
                     /translation="MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDK
                     KLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTIIVSTIATGLMLLFGLMVGYALAK
                     VDFKGKKIVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
                     TNFFKAIPDTLIEAAKLDGASDLKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDML
                     VTKSDGTVTLNVLISQMFGPYATYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTL
                     K"
     gene            3103..4635
                     /locus_tag="IBJ56_001829"
     CDS             3103..4635
                     /locus_tag="IBJ56_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucohydrolase"
                     /protein_id="HAM3418082.1"
                     /translation="MEFWRRSVFYEIYMKSFQDSNGDGLGDFKGLTSRLDYLVDLGID
                     GIWLTPFYPSPQVDNGYDVSDYCDINPDYGDMTDFRVFMKAADARGIKVIIDLVLNHS
                     STEHAWFKESRSSKTNPKRDYYIWREKPNNWESFFGGSAWEMDELTGEYYYHSFAKEQ
                     ADLNWANEAVRAEMEQVLAFWLNEGVAGFRLDVINNLTLVLEFPDNPVTSGEMEHVYD
                     RNQSGLEQALEDIASFCRKERDVFLVGEISSDQLAEIARYSSKKMLDVTFNFNFGSVD
                     QLDAKSVFTTLNEMETALNEGQWPTLFFGSHDMSRFRSRLASGDIVKTQLLAFLMLTA
                     KGVPFIYYGEEVGMPDLTFSSVKEMRDIQGTAAYYQALQTGSDEKQALEIAIEKTRDK
                     ARGPMIFPDGKPFTLGEPWIKMATLPEKEARTMWRFYQGLLAFRKENDFKEMEYTFLK
                     LDGEVLSYQRGEFIFLLHFGEEEVTYPLQGNYQLVFGEAVMVGNGIRMGAHTGIALRV
                     EE"
     gene            4637..5551
                     /locus_tag="IBJ56_001830"
     CDS             4637..5551
                     /locus_tag="IBJ56_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1861 family protein"
                     /protein_id="HAM3418083.1"
                     /translation="MNTIDNLLQVYRENSAAFGTRITLNGAGDKDVYNITAPFHWLGK
                     EYIAGRVESRDSEFSEVRFFEKIETDKYQLVENTTVLALQDPFVTFVQGELIIGGVEV
                     FPKETDPTMLDWRTNLYRATSLTDFEQILAGPIGMKDLRIKELADGRILVLTRPQGEK
                     GGRGKIGAIVIDSLAELTIEKIEAAPLLKRNFSGEEWGGGNELHLLEDERIGVLGHIA
                     CFDEAGNRHYYACSFRLNEDFSQIEQEKIIAERANFAPSEPKRPDLADVVFSGGLIRN
                     SDGTATLYAGIGDSDAQKLAIPDPFKNN"
     gene            5573..6640
                     /locus_tag="IBJ56_001831"
     CDS             5573..6640
                     /locus_tag="IBJ56_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosidase"
                     /protein_id="HAM3418084.1"
                     /translation="MNIYRYEENPLITPLDVKPIHEGFEVIGAFNAGVAEYNGEVLLL
                     LRVAEKPVSEDPEVVLAPVYNAKSKELELQQFRLDDENYDFEDPRMIRSKAKLEGFSY
                     LTSLSYIRIARSKDGHQFTLDEKPFLYPFNEYQTFGIEDARVTQIGDTYHVNFSAVSE
                     FGVADALVTTKDFENLEYQGNIFAPENKDVLIFPEKINGKYYALHRPSLKSIGNLDIW
                     IASSPDLRSFGDHRHLLGIRPGEYDSGRVGGGCVPIKTEEGWLILYHGATEENRYVMG
                     AALLDLNDPTIVLKRTKTPILEPVADYEKNGFFGDVVFACGAIQEGDTLHMYYGVADT
                     SMAGCDMKISEILHQLEVENK"
     gene            6637..8310
                     /locus_tag="IBJ56_001832"
     CDS             6637..8310
                     /locus_tag="IBJ56_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HAM3418085.1"
                     /translation="MTWQQHLNAWKNADLSDEWRRELQRVEQEQERFDGYLTFGTGGM
                     RGKMGVGTKRINLFTIRRVAKGLGDYVVANGGAEMGVAIAYDSRHHSGAFAQETAKVL
                     AAQGVKVYLSDTIRPTPALSFCVREKGAFAGVVITASHNPSIYNGFKVYDKNGCQITL
                     GVAQEIAGYLENITDIFTIPVRELPNPLVMTLGKEMDDAYLKALTAVVSRPDLLADYG
                     NELQICYTPLHGAGKELVMRGLLENGFSETTMIAEQSEPDGDFPTVVSPNPEEENSFE
                     LAKKQAKEIQADIILATDPDADRLGVAVLNKQATYQILTGNQLGALLLQYILEAKTSV
                     TQADTMINTIVTGDLGGRIAHDFGINHIQTLTGFKFIGEKIAEMEGTEKNFLFGYEES
                     YGYLIAPFVRDKDAVQAALLTAEMALFYKKEGTTLLQKLTNLYEKFGYHKEHLHTITL
                     DDSDGTTKMNQVIDDLRKEPTCIPGITVLEDFLTSKRTNLSTMEMTNIELPKENVLKF
                     YLNDNAWFAIRPSGTEPKCKIYFQTIGQTEEIATKAIDELKKCVLAKWD"
     gene            8772..>10323
                     /gene="cshA"
                     /locus_tag="IBJ56_001833"
     CDS             8772..>10323
                     /gene="cshA"
                     /locus_tag="IBJ56_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase CshA"
                     /protein_id="HAM3418086.1"
                     /translation="MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIG
                     QAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVL
                     AVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMG
                     FIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQF
                     FVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQ
                     AKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRA
                     GKEGMAITFVQPREMGYLRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITE
                     ENLADYKTFANELLEKYDATDIAAAMLKMLAKEPDKTPVHITEERPLPSRGGGGYKGK
                     NGKGGKGGGYRGGSGKGGSYRDRNNSGKGRRSGGGSGSGGGGNRDRRSGGGEQRSGGN
                     KGNYSQKSK"
BASE COUNT         3236 a         1741 c         2373 g         2973 t
ORIGIN      
        1 aatgtaatgt gataatgtaa tcgtaatcaa gcgcttacaa ttacaaaaag tggaattagg
       61 aggattattg atatgaagat tagaaaaatt gctattgcag ctcttagtgt tgtggttgct
      121 gggtcattac ttactgcttg tggtggtgga aacagcaaaa gtgacgataa tggtaaaaca
      181 aaagtaacgt tttgggcagc tccaaatcca acgcaagtaa aatattggga tgaaatggca
      241 aaagcttatg aaaaagaaaa tccagatgta acgattgaag tttcccaaat gaaagaaagc
      301 ccatcttcgg aagcaactat ccaatcagct attgcctcta aaacggcacc aaccatgtct
      361 gaaaatatca atcgtagttt cgctgcacaa ttagctgaca gtaaagcgat tgtccctttg
      421 aacgatgtaa aaggacttga tgatgttgtc aaagaacgaa acatgagcga aacaatggat
      481 tcttggaaat tctctgacgg aaaccaatat gtgctaccag tttactccaa tccaattctt
      541 tttgcttggc gtttagatac actgaaagaa cttggctatg atgcaccgcc aaaaacatat
      601 agtgaagcgc ttgaagttgg taaaaaatta aaagcgaaat atccagacaa agttctttgg
      661 gcaaaaggtg atttatctga tccaactgct tggatgcgct ggtttgattt cttcccactt
      721 tatgatgcag cttctaaagg aaatgcattt gtagaagatg gcaaattagt agcagacgat
      781 aaagctggaa cagagttatt aacatttatg tccgaattgc aaaaaaacaa attacttctt
      841 gcaagtaaag caacagatcc atttgaaact ggaacaagca tcatggcaga taatggcccg
      901 tggactttcc ctaactggga tgaaaaattc ccggaactta aatataacga aaactatgca
      961 atcacagcgc cactagtacc agataacatg gcgaatgaag aaaatgttgc tacatacgct
     1021 gattcgaaag gcgttgtaat gtatgcacaa gcgacagata aagaaaaaga agcagcaatg
     1081 gatttcttga aatttgttta taacgatgac aaaaatgact tgaaattctt agaaacaact
     1141 aacttaattc ctgcgcgtga tgatgcaaca gaaaacgaaa ctttcacagc attctttaaa
     1201 gaaaatccag aactcgaagt ttatgcagct aatgtaccat atagtatccc tgcgatggat
     1261 gacgcaaaat ataatgatat tcaacaaatc attggtgaag aagcgtggaa tccgattgta
     1321 cgcggggaga aaaaacctgc taaagcttgg tcagatatga agaaagcgga ggacggggtg
     1381 cttcaagaat gaagcggcga aataacaaat tgggctggtc atttaccagc ccgtatctca
     1441 tattcactgc gatatttttc ttagtaccgc ttgtttggtc gatttggtta tctgtaactg
     1501 attggaacat gatgagtccg gaaattaatt ttgttggctt tgataatttt attaaagcgt
     1561 ttactagtcc agcagttcaa gcagcctttt ttgttactta taaatttttg attgtttttg
     1621 ttcctatggc gttaattatt tcgatgattg tcgcggtatt agtgaacggc ttgccgaaat
     1681 ttaaaggact ttatctggtt gcgtttttcc taccgtattt gtcttcaggc gttgtaactt
     1741 cgcttattgt gcaagggtta ctttcataca atagtgcgct gaatgtgttt ttacgcgggc
     1801 attttggttg ggatatcgat tggctcggga caccaatgtc ggcgctcgtt attatttcac
     1861 tgatgatagc ttggaaaatg tctggttact atgcgctcat tttaatttct ggacttgcta
     1921 gcattaatca tgaaatttat gaagctgcag caatggatgg ttctggtaga tttagaacat
     1981 tttggaaagt cactgttccg atgctatatc cagctttatt taccgtaatt gttttagcgg
     2041 taggcgttag ttttgggatt ttcaccgaag tttaccaatt gactggtggt ggaccgaact
     2101 ttgcaacaaa tacatggcaa atggaaattt ttaaccaagc attcgttaac ttgaattctg
     2161 gttatgcttc agcgatttct ctaatggctg ctactgtaac atttgcatcg attggtgtta
     2221 ttaagaaaat gcttgagaaa tggggtcaaa gaaatggttg gacataatag taaagcgggt
     2281 aaaattgttc gctatatact gacaacatta cttatgctag tcatgattta tccttttatt
     2341 tatttagtat taaactcatt tgctgcttgg gatcaggtag ataaaaagtt gattcctaca
     2401 gaattcacta ctcgttcgtg ggattggtta tttggtaatt cagttgttgc ggcaccggcg
     2461 ccgtggattc atgcgtttat taatacaatt attgtttcca ccattgcgac aggcttgatg
     2521 ttgcttttcg gcctaatggt aggctacgca ctagcaaaag tggattttaa gggcaagaaa
     2581 attgttaata atgcgatttt atttcaaatg ttttttccgg caatcatctt gctgattccg
     2641 cagtttttaa tgattacgga ctttggttta ttggatacct atgcgggaat gattatcccg
     2701 actatgctta gcttatgggc tgtatttatg tataccaact ttttcaaagc gattccagat
     2761 acattaattg aagctgccaa actggacggg gcgagtgatt tgaagatttt gtttcgggtt
     2821 gtgctgccaa tgtctaaatc aattacgacc gttattttct tattcctttt cacagacaga
     2881 tggacgaatt tactttggga tatgcttgta acgaagagtg atggaacagt cacattgaat
     2941 gtgctaatct cgcaaatgtt tggaccatat gcaacctatc ctgggccaat gtatgcggca
     3001 tctgtgttac taacacttcc acttattatc ttgtttttat tcttctcgaa gaaattccaa
     3061 gaaggaatgc aatttacttt gaaataaaag gagcgactga acttggaatt ttggcgtcgt
     3121 agtgtgtttt atgaaattta tatgaaatca tttcaagaca gtaatggcga tggtttaggt
     3181 gattttaaag gtttaacgag cagattagat tatctagtgg atttgggaat tgatggtatt
     3241 tggttgactc cattttatcc ttcaccgcaa gtggataatg gttatgatgt gtctgattac
     3301 tgcgatatta acccggatta cggcgatatg actgattttc gagtgtttat gaaagcggca
     3361 gatgctcgag gaataaaagt tattatcgac ttagtattaa atcattcgtc aacagagcat
     3421 gcttggttta aggagtcgcg tagtagtaag acgaatccta aacgagatta ttatatttgg
     3481 cgagaaaaac caaataattg ggaatcgttt tttggtggtt ctgcttggga aatggatgaa
     3541 cttactggcg agtattacta tcatagtttt gcaaaagaac aggctgactt aaactgggcg
     3601 aatgaagctg ttcgcgcaga aatggagcaa gttttagcgt tttggttgaa tgagggagtg
     3661 gcgggattca ggttagatgt tatcaataat ttaacgctcg tacttgaatt tccggataat
     3721 ccagtcacat ctggtgaaat ggagcatgtg tatgaccgta atcagagtgg cttagaacaa
     3781 gcgttagagg atatcgcttc cttttgtcga aaagagcgcg acgtgttttt agtaggcgaa
     3841 attagctcgg accaattagc tgaaattgct agatatagct cgaaaaaaat gctagatgtc
     3901 acatttaatt ttaattttgg cagtgttgat cagctagatg caaaatctgt atttacgaca
     3961 ttgaatgaga tggaaacggc attaaatgaa gggcagtggc cgacgctttt ctttggaagt
     4021 catgatatga gcaggttcag aagtcgcctc gcatctggag acatagtaaa gacccagttg
     4081 ctcgcatttt taatgttaac tgcgaaaggc gtgccgttta tatactacgg agaagaggtg
     4141 ggtatgcctg atttaacgtt ttcttccgta aaagagatgc gcgatattca agggacagcc
     4201 gcgtactatc aagctttaca aactggttca gatgaaaaac aagcactcga aatcgctatt
     4261 gaaaaaacgc gtgacaaagc acgtgggccg atgattttcc cagatggaaa gccatttact
     4321 ctaggtgaac catggattaa aatggcgact ttgccggaaa aagaagcacg aacgatgtgg
     4381 cgattttatc aaggattact cgcatttcgt aaagaaaatg attttaaaga gatggaatat
     4441 acttttttga agttggatgg agaagtactc agttatcagc gaggtgaatt tatcttttta
     4501 cttcattttg gtgaggaaga ggtaacttat ccgcttcagg ggaactatca gcttgttttt
     4561 ggagaagcag tgatggtagg aaatggcatt agaatgggcg cgcatactgg aattgcgctt
     4621 agagtggagg aatagaatga atacaatcga taatttgttg caagtttacc gggaaaatag
     4681 tgctgcgttt gggacacgta tcacgttaaa tggtgctggc gacaaagatg tatacaatat
     4741 tacggcacca tttcattggc ttgggaaaga atatattgca ggtcgagtgg agtcgcgtga
     4801 tagcgagttt tcggaagtac gcttttttga aaaaatagag acggacaaat atcaattggt
     4861 tgaaaatacg actgttttag cgctacaaga tccatttgtt acatttgttc agggtgagct
     4921 gattattggc ggggtagaag tttttccgaa agaaacggac ccgactatgt tagattggcg
     4981 tactaattta tatcgggcaa cctcgcttac tgattttgaa caaattcttg ccgggccaat
     5041 tggtatgaaa gatttacgta tcaaagaatt ggctgatgga cgtattttag tattaacaag
     5101 acctcaaggc gaaaagggcg gtcgcgggaa aatcggcgca atcgtcattg actcactggc
     5161 agaattaaca atagagaaaa tagaagctgc accacttttg aaacggaatt tttcaggaga
     5221 ggaatggggt ggcggaaatg agcttcattt gttagaagat gagagaattg gcgtgcttgg
     5281 tcatattgct tgttttgatg aagcgggcaa tcgtcattat tacgcatgtt cttttcgatt
     5341 gaatgaagat ttttcgcaaa ttgagcaaga aaaaataatt gccgaacgtg ctaattttgc
     5401 ccctagtgag ccgaaaagac ctgatttagc ggatgttgta tttagcggtg ggttaatcag
     5461 aaattcggac ggtactgcga cactttatgc agggattggc gattctgatg cacaaaaatt
     5521 agcaattcct gatccattta aaaataacta atagtaggag ttttgagtag aaatgaacat
     5581 ttatcgttat gaagaaaacc cattaattac acctttggac gtaaaaccaa tccatgaagg
     5641 ttttgaagtg attggcgctt ttaacgctgg tgttgccgaa tataacggcg aagtgctttt
     5701 acttcttcgt gtggcagaaa aaccagtcag tgaggatcca gaagtagtcc ttgcgccagt
     5761 ttataatgcg aaaagtaaag aattagaatt acaacaattc cgattagatg atgaaaatta
     5821 tgattttgaa gatccgcgaa tgattcgcag taaagcaaaa ctagaaggat tttcttattt
     5881 aacttctctt tcatatattc gaattgctcg tagtaaagat ggtcatcagt ttaccttaga
     5941 tgaaaaaccg tttttatatc cgtttaatga gtatcagaca tttgggattg aagatgctcg
     6001 tgtgacgcaa atcggggata catatcacgt gaattttagt gcggtatctg agtttggcgt
     6061 agcggatgca ttagtgacca caaaagactt tgaaaatttg gagtatcaag gaaatatctt
     6121 tgctcctgaa aataaagatg tactaatttt cccagaaaaa attaacggaa aatattatgc
     6181 cttacatcgt ccaagtttga aaagtattgg taatttagat atttggattg cttcttctcc
     6241 agatttgcgc agttttggcg atcatcgtca tttgcttgga attcgtcctg gtgaatatga
     6301 tagtggccga gttggcggcg gatgtgtgcc gattaaaaca gaagaaggtt ggttaatttt
     6361 atatcacgga gcaactgaag agaatcgtta cgtgatgggc gcggcgcttc ttgatttaaa
     6421 cgacccaacg attgtactga aaagaacgaa aacgcctatt ttagagccag ttgccgatta
     6481 tgagaaaaat ggctttttcg gtgatgttgt tttcgcatgt ggggccattc aagaaggtga
     6541 tacgctgcat atgtattacg gcgtggcgga tacttctatg gcgggctgtg acatgaaaat
     6601 cagcgaaatt ctacatcagt tagaagtgga aaacaaatga cttggcaaca acatttgaac
     6661 gcttggaaaa atgccgattt atcagatgag tggcgccgtg aattacaacg agtggaacag
     6721 gagcaggaac gatttgatgg ttatttaacc tttgggactg gcgggatgcg cggtaaaatg
     6781 ggcgttggaa cgaagcgcat caatcttttt accattagac gagtagcgaa aggtttggga
     6841 gattatgttg tcgcgaatgg aggagccgaa atgggtgttg cgattgcgta tgactcgaga
     6901 catcattcgg gtgcttttgc gcaggaaacg gcaaaggtcc tggcggcgca gggagtcaaa
     6961 gtttatttat ccgatacgat tcgcccaaca ccagcgctat ctttttgcgt tcgagaaaag
     7021 ggggcatttg cgggcgttgt gattacagca agccacaatc cttctatcta taatggtttc
     7081 aaagtatatg ataaaaatgg ctgtcaaatc acattgggtg tagcgcagga aattgctggc
     7141 tatttagaaa acataacgga tatctttacc ataccagtgc gcgaattacc caatccactc
     7201 gttatgacgc taggaaaaga aatggacgat gcttatttaa aagctttaac agcagtcgtt
     7261 tctcgccctg atttgcttgc tgactacggt aatgaactac agatttgcta cacaccgctt
     7321 catggagctg gaaaagaact tgttatgcgt gggcttttgg aaaatggatt ttcggaaacg
     7381 accatgattg ctgagcaaag tgagcctgac ggggattttc cgacagtggt ttcgcctaat
     7441 ccagaagaag aaaacagttt tgaactagcc aaaaagcagg cgaaagaaat acaagccgat
     7501 attattttgg cgacagatcc ggatgctgat aggctggggg tagctgtttt aaacaagcaa
     7561 gctacgtatc aaattttaac agggaatcag ctaggcgcat tgcttttaca gtatatttta
     7621 gaagccaaaa cgtcggtaac tcaggcggat acgatgatta atacaattgt tactggggac
     7681 ttaggtggaa gaatcgcgca tgactttgga attaatcata tccagacgct cacgggtttc
     7741 aaatttatcg gtgaaaaaat agccgaaatg gaaggcacgg aaaaaaactt tctttttgga
     7801 tacgaggaaa gttacggtta tttaatcgcg ccatttgttc gggacaagga cgccgttcag
     7861 gcagcattac ttacagcaga aatggccctt ttctataaaa aagaaggaac aacacttctt
     7921 caaaaactaa caaatttata tgaaaagttc ggctatcata aagaacactt gcacacgatt
     7981 acgctagatg atagcgatgg aacaactaaa atgaatcaag tgatagacga tttgcgcaaa
     8041 gagccaactt gtattcccgg cataacggtt ttagaagact ttctaacgag taagcgaacc
     8101 aatctttcaa cgatggaaat gacaaacata gagctaccaa aagaaaatgt tttaaaattt
     8161 tacttaaacg ataacgcctg gtttgcaata cgtccttctg gaacggaacc gaaatgcaaa
     8221 atctatttcc aaacaatcgg tcaaacagaa gaaatagcga caaaagctat agatgagttg
     8281 aaaaaatgcg ttttagccaa atgggattaa taaaaagctg gaaattgttt tcggacgatt
     8341 ttcagctttt tttaaaagat ttatctataa aaatcgctga aaaacccgga taagcgtaca
     8401 tttaaaaaga attaagtttt tttattcgat aatagcaagg aaagataagc ttttgacgtt
     8461 gaaaagaaat agttagtgtg ttatgatgat agatggaagt ttattaggtt tatatttagc
     8521 ctagtgatta atgagggctt ttttatttga tgcgttagaa ctgctataat ggcagagaaa
     8581 ttttctgatg ccgtgaatca ttttgcttgg tgcgcccagg cttttctatt gcagaaaaat
     8641 gaaaatgaaa gatagcagtt ttcataaaaa caactgcaaa tgaacagaca aacaatcgta
     8701 ataagcgtat tgtgatgaat tataaaagta gctctcctac caaactttaa acaggtaaag
     8761 gagaaatgac attgacaaaa ttttcggagt tcggactgga cgaaaaaatt gtaaaatcag
     8821 taaatcggat ggggtttgaa gaagcaacac caatccaaga aaagacaatt ccactaggac
     8881 tagcaggtaa agacttaatc gggcaagcac aaacaggtac tggtaaaaca gccgcttttg
     8941 gtcttccaat gattcacaaa attgaccaaa agagtaacaa cgtacaagct ttaattattg
     9001 ctccaacacg tgaacttgca atccaagttt ctgaagagct ttataaactt agctatgaca
     9061 aacatgtacg tgtgctagcg gtttacggtg gtagcgatat cagccgtcaa atccgttcac
     9121 ttaagaaaaa cccacaaatc gtagttggta cgccaggacg tattttggat catattaacc
     9181 gtcgcacact gaaactagac cacgtggaaa cacttgtact agatgaagca gacgaaatgc
     9241 taaacatggg cttcattgat gatatcgaaa ctattctaaa agaagtacca gcagaacgtc
     9301 aaactttact attttctgca acaatgcctg atccaattcg ccgtatcggt gaacgtttca
     9361 tgcatagccc agaacttatt cgcattaaag cgaaagaaat gactgcacta ttaattgaac
     9421 aattcttcgt aaaagtgcat gaaaaagaaa aatttgacgt attatctcgt ttattagacg
     9481 ttcaagcacc ggaactagct attgttttcg gtcgtacgaa acgtcgtgta gacgaactat
     9541 ctcgcgcgct tgatatgcgt ggttacgtgg ctgaaggtat ccacggtgac ttgacgcaag
     9601 caaaacgtat gagtgtacta cgcaaattta aagaaggaaa aattgatgtt ctagttgcaa
     9661 cagacgtagc agctcgtgga cttgatattt ccggcgtaac acatgtatat aactatgata
     9721 ttccacaaga tccagaaagc tatgttcacc gtatcggtcg tactggtcgt gctggtaaag
     9781 aaggtatggc gattactttc gtacaacctc gtgaaatggg ttatttacgt attgtggaag
     9841 aaactacgaa aaaacgtatg caaccacttc aagctcctac ttgggacgaa gcatttgcag
     9901 gccaattacg cgtagcaact gaaaaaattc aagaagcaat cacagaagaa aacttagctg
     9961 actacaaaac gtttgctaac gaacttcttg aaaaatacga tgcaactgac atcgcagcag
    10021 caatgcttaa aatgttagcg aaagagccag acaaaactcc tgtccatatt actgaagagc
    10081 gtccattacc atcccgtggt ggcggtggct acaaaggtaa aaatggtaaa ggcggcaaag
    10141 gtggcggcta tcgcggcgga agcggcaaag gcggaagcta ccgcgatcgt aacaacagcg
    10201 gcaaaggtcg tcgtagcggc ggcggaagcg gttctggcgg tggtggcaat cgtgatcgtc
    10261 gtagtggcgg cggagaacaa cgcagcggcg gcaacaaagg caactactca caaaaatcta
    10321 aat
//
LOCUS       DABQVC010000106        10272 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.106,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000106 DABQVC010000000
VERSION     DABQVC010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10272
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.106"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            226..768
                     /locus_tag="IBJ56_001834"
     CDS             226..768
                     /locus_tag="IBJ56_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3418087.1"
                     /translation="MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSI
                     ETLFAILEVLGSTPKDFFDEEEHNQKVIYGELEHTFFEDEEKGYRIKWLVPESNEKEM
                     EPVLLEIEANSCFKSFEPSLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQ
                     IINRSNEQATLILVATESYL"
     gene            784..1878
                     /locus_tag="IBJ56_001835"
     CDS             784..1878
                     /locus_tag="IBJ56_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418088.1"
                     /translation="MTETIIRFENVTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCG
                     KTTILRLIAGFLEASEGQIYLGDKVINQIPANKRPVNTVFQDYALFPHLNVYENVAFG
                     LRIKKLKKDAIDEKVKEALRFVNLKGYEKREISEMSGGQRQRVAIARAIVNEPEVILL
                     DEPLSALDLKLRTEMQYELRDLQKRLGITFIFVTHDQEEALAMSDEIFVLNKGEIQQS
                     GTPIDIYDEPINKFVADFIGESNIVNGKMIQDFEVEFVERRFECVDQGFRPNEVVEVV
                     IRPEDLEITSAEKGQLQVTVDWMLFRGVHYEVGCIDTDGNEWLVHTTRKVRVGDKIGL
                     AFEPEAIHVMRLGETEEEFDKRLDSYDEVQ"
     gene            1878..2687
                     /locus_tag="IBJ56_001836"
     CDS             1878..2687
                     /locus_tag="IBJ56_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418089.1"
                     /translation="MNRRTRTVYLVPYVLWILLFVVAPILLIVYYSFFDVDGNFTVDN
                     YIHFFTPVYLKMTASSFWYAFLITVFTLLISYPTAYLLTKLKHKQLWLLLIILPTWIN
                     LLLKAYAFIGIFGTYGAANQFLEIIGIGSKQILFTDFSFLFVSTYIFIPFMILPIFNA
                     IEEINPTLIQASRDLGASSLTTFRRVIFPLTADGVKSGCQAVFIPALSLFMITRLIAG
                     NRVITLGTAIEEHFLVTQDWGMGSTIGVFLIIAMILIMFLTGSKKKRGARK"
     gene            2684..3490
                     /locus_tag="IBJ56_001837"
     CDS             2684..3490
                     /locus_tag="IBJ56_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418090.1"
                     /translation="MKKSKWGTIYLVLVFVILYAPIFYLIFYSFNKGGTMHNFSGFTL
                     GYYKEVFQDTRLLIIVLNTFVIALLSSVIATIIGVCGALAIKFMPKPFAKNSLLSLNN
                     VLIVSPDVIIGASFLIFFTILGVKLGFISVLVSHIAFSIPIVVLMILPKLQEMSPTLM
                     DAARDLGASQWQVLSKVILPYIMPGVLAGFFMALTYSLDDFAVTFFVTGNGFSTLAVE
                     IYSRARQGISLSINALSTLIFLFTIILVIGYYFINQRNTSKNIRTGATKE"
     gene            3487..4560
                     /locus_tag="IBJ56_001838"
     CDS             3487..4560
                     /locus_tag="IBJ56_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAM3418091.1"
                     /translation="MKQLLKIFVPVIVVALLMMLLATTMNRSEGYAGSNTLTIYNWGD
                     YIDPSLITKFEKETGIKVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENL
                     LIPLDHSKLPNEKYLDPRFMDLSFDDDNKYSMPYFWGTLGIIYNKEMFPDKNFDTWNA
                     LFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVG
                     DEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVD
                     GAHKFINFMLKPENAAINAEYVGYATPNAKAVELLPKEISSDERFYPDMDELNNLEVY
                     DNLGKRMLSYYNELFLEFKMYRK"
     gene            4690..5391
                     /locus_tag="IBJ56_001839"
     CDS             4690..5391
                     /locus_tag="IBJ56_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HAM3418092.1"
                     /translation="MTKEKVLWGYDEKTGPEMWGHICSDFEIAHTGKAQSPVDIEQAD
                     VVKLKPSTMKFYYKETDYTIRRIEQSVHVFPHDKEQGLRFNGEYYPLVSFHAHIPAEH
                     LLDGYVYPIEWHFVHEKPDGTTLVMSAWMEIDNTNNVEFKDLPTYFPEVFADFETERE
                     ITLDVNEFMPEERVFYTYQGSRTTPPTVEGVTWIVLKNAKTLGQEDFTEFEKAIGNTS
                     RPVQDLNGREITFYN"
     gene            5459..6001
                     /locus_tag="IBJ56_001840"
     CDS             5459..6001
                     /locus_tag="IBJ56_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HAM3418093.1"
                     /translation="MYEKARQMMIKAHSGQVRKITGEPYFSHPLNVARILRRAGFREE
                     VVVAGLLHDAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTG
                     SLEEKALIVADKLDNLTSVKYALSSEGKSVWSYFKRGYDLQKWYNQGIKNNMEYGLNP
                     SEIPPFFGEYARLVKWIFKK"
     gene            6137..7009
                     /locus_tag="IBJ56_001841"
     CDS             6137..7009
                     /locus_tag="IBJ56_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAM3418094.1"
                     /translation="MVYGAIEAGGTKFVVAIGEKSGKIIKRESYPTTEPAETMKAVIQ
                     FFKQYEDELKAIGIGSFGPIDIRKSSATYGYITQTPKLAWRNYDIVGAMKKEFNVPIG
                     FTTDVNAAALGEVSLGAAAGLDSCIYLTIGTGIGGGAVVSGKILEGFSHPEMGHIMVR
                     RHKRDRFTGSCPSHSDCLEGLAAGGAIEKRWGQKAAELADNEEVWNLEAHYIAQALMN
                     YTLILSPERIVLGGGVMKQRQLFPLVRQKLKALVNNYVQLPDLDEYIVPPKLEDDAGI
                     TGCVLLAVDAEESN"
     gene            7094..8020
                     /locus_tag="IBJ56_001842"
     CDS             7094..8020
                     /locus_tag="IBJ56_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabK"
                     /protein_id="HAM3418095.1"
                     /translation="MSITNLLNIKYPIIQGAMAQIAKAPLVAAVSNAGGLGIIASGGM
                     TADMLREEIKKTKALTDKPFGVNLMLMMTNIAELTEVIIEEKVGIVTTGAGTPKTFMP
                     IWKEAGIIVIPVVPSVMIAKRMEKMGADAVIAEGTEAGGHVGETTTMALLPQIVDAVT
                     IPVIGAGGIADGRGIVAALALGAKGVQIGTRFLATDECPVHPDFKAAVIKASDRDTMV
                     TGRKAGAPVRSIKNKMIKEYIRLEEENADRDTLEELTLGSLRKAVQEGDTDNGSVMAG
                     QIAGLITEIKPCKDVIEEMMTDAKNVIAGLEL"
     gene            8236..8520
                     /locus_tag="IBJ56_001843"
     CDS             8236..8520
                     /locus_tag="IBJ56_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 family protein"
                     /protein_id="HAM3418096.1"
                     /translation="MREIKVNEAMFQKHASKLDSKSAGSYLPLKGGNMAYSRANSINQ
                     LRSALIDLVDVVEDFQAVTKQDAGRLKKMGMAYAKQDQAMGQKINQLEVR"
     gene            8521..8889
                     /locus_tag="IBJ56_001844"
     CDS             8521..8889
                     /locus_tag="IBJ56_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P"
                     /protein_id="HAM3418097.1"
                     /translation="MDSTHSRLEQQLQQVKKAQDVLQDNLGQTKRKQVEQEWLEEDSH
                     QLEMEKQGLLDFLRGGWQGEEANGFHRYLEEQQHEEAMAWRKDLSEKRVHLEEEARTT
                     RAEMHDIETKQASLRKEWNQ"
     gene            8886..9968
                     /locus_tag="IBJ56_001845"
                     /pseudo
     CDS             8886..9968
                     /locus_tag="IBJ56_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463867.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3356 a         1758 c         2327 g         2831 t
ORIGIN      
        1 agcgatattt tttcatgaat atctgccacc taagctgttt tattaaagaa attttagcac
       61 taaaaataaa cgttgtctat cttagagaaa ttcaaaaaaa ctattgttca tgtggaagct
      121 ttgttgtata atgtagcttg ctgtaagtaa actttgtgtt taatattagt aaacttctgt
      181 gacttgaggt ttactatcac taaacttgaa agaaaggaca ttgacatgga aattggcaaa
      241 cgcataaaaa atcttaggct cagtaagaat ttgacacaag aagaattagg cgaacgaacg
      301 gatttgacga agggatatat ttctcagcta gaacgagatt tgagttctcc ttctatcgaa
      361 acgttatttg ctattttgga agtgttaggt tctactccga aagatttctt tgatgaagaa
      421 gaacacaatc aaaaagtaat ttacggagaa ctagagcata ctttctttga agatgaagaa
      481 aaaggttaca gaattaagtg gcttgttcca gaatcgaatg aaaaagaaat ggaaccagtg
      541 ctacttgaaa tagaggcaaa tagctgtttt aaaagcttcg aaccatcact ttcagaaact
      601 tttgcctacg tgctaaaagg ggaagtgacc gtgctgcttg gtcgaaatga gtatgtagcc
      661 aaaaaagggg aagcaattta tttccacgcc gcagatgaac atcaaataat taatcgatcg
      721 aatgaacaag cgacactcat cttagtagcg acagagtcat atttataagg gaggtaaatg
      781 attgtgacag aaacaattat tcgttttgaa aacgtaacaa aacaatttga taatgatcca
      841 ccagtgcttg acaatgtcag ctttgaaata gaaaaaggga agttttatac tttacttggc
      901 ccatctggtt gcgggaaaac gaccattttg cgcttaatag ctggattttt agaagcttca
      961 gagggacaaa tttatctagg ggataaagta attaaccaaa ttcctgccaa taaacgtcct
     1021 gtaaataccg ttttccaaga ttatgcgtta tttccacatt taaatgtgta tgaaaatgtg
     1081 gcttttggtc tgcgtattaa aaagctaaaa aaagatgcaa tcgacgaaaa agtaaaagaa
     1141 gcactgcgct ttgttaactt aaaaggctac gaaaaaagag aaattagcga aatgtctggt
     1201 ggacaaagac aacgtgtcgc gattgcacgg gcaatcgtca atgaaccaga agttatttta
     1261 cttgatgagc cactatcagc gcttgattta aaactacgta cggaaatgca atatgaattg
     1321 cgcgatttgc aaaagcgtct tgggattacg tttatttttg tgacacatga tcaagaagaa
     1381 gcacttgcga tgagtgatga aatttttgtg ttaaataaag gtgaaattca acaaagtggt
     1441 acgccaattg atatttacga cgagccaatt aataaatttg tcgcagattt tatcggcgaa
     1501 tcgaacattg ttaatggcaa aatgatacaa gatttcgaag tggaatttgt ggaaagacgt
     1561 tttgaatgtg tcgaccaagg tttccgccca aatgaagtcg tggaagtagt tatccgtccg
     1621 gaagatttag agattacttc ggctgaaaaa ggtcaactgc aagtaaccgt agactggatg
     1681 cttttccgtg gtgtgcatta tgaagtaggt tgtatcgaca ctgatggaaa tgaatggctt
     1741 gttcacacaa cgagaaaagt tcgtgtgggt gataagattg gcttagcgtt tgaaccagag
     1801 gcaattcatg ttatgcgtct cggggaaacg gaggaagaat tcgataagcg gcttgatagc
     1861 tacgatgagg tgcagtgatg aatagacgca cccgtacagt ttaccttgtt ccttatgtac
     1921 tttggatttt actttttgta gtcgcgccga ttttattaat tgtttattat tctttttttg
     1981 atgtagatgg caattttacg gtagataatt atattcactt ttttacgcct gtatatttaa
     2041 aaatgacggc tagttcgttc tggtacgcat ttttaattac tgtttttacg ttgttgattt
     2101 cgtatccaac ggcttactta ttaacgaaac taaaacataa acaattgtgg ttgctactta
     2161 ttattttacc aacttggatt aatttgctgc ttaaagcgta tgcctttatt gggatttttg
     2221 ggacatacgg ggcggcgaat caatttttgg aaataattgg aattggttcg aaacagattt
     2281 tatttacgga ttttagtttc ttatttgtat cgacctatat ttttattccg tttatgatat
     2341 taccgatttt taatgcaatt gaggaaatta atccgacgtt gattcaagcg tcgcgcgatt
     2401 taggcgcatc tagtttgaca acatttagac gggtgatttt cccgctcact gctgatggcg
     2461 tgaaatcagg gtgtcaggct gtttttattc cagcactatc actctttatg attacacgat
     2521 taattgcagg aaaccgcgtc attacgctcg gaacagcgat tgaagagcat ttcctagtaa
     2581 cgcaagactg gggaatgggt tcgacaattg gcgtattttt aattattgcg atgattttaa
     2641 ttatgttcct aacaggctcg aaaaagaaaa gaggtgcgcg taaatgaaga aaagtaaatg
     2701 gggtacgatt tatttagtgc ttgtttttgt gattttatat gcgccgattt tctatttgat
     2761 tttttattcg tttaataaag gcggcacgat gcataatttt agtggcttta cgcttggtta
     2821 ttataaagaa gttttccaag atacgcgcct actaattatt gttttaaata cgtttgtaat
     2881 tgcgctgctt tcttcggtga ttgcgacaat tatcggcgtt tgcggggcgc tagcgattaa
     2941 atttatgcca aaaccattcg cgaaaaactc gcttttaagt ttgaataatg tgttgattgt
     3001 tagcccggac gttattatcg gtgctagttt cttgattttc ttcacgattt taggcgtaaa
     3061 attagggttt atttccgtcc tagtgtcgca tattgccttt agtattccga ttgtcgtatt
     3121 gatgattttg ccgaaattgc aagaaatgag cccgacgtta atggatgcgg cgcgcgactt
     3181 aggtgcaagc cagtggcaag ttctttctaa ggttattttg ccgtatatta tgccaggcgt
     3241 tttagctgga tttttcatgg cattaacgta ctcgctagat gattttgcgg tgacgttctt
     3301 tgtaactgga aatggcttct cgacattggc agtggaaatt tattcccgag ctagacaagg
     3361 gatttcgctt tctatcaatg ctttgtcgac actgattttc ttattcacga ttattctcgt
     3421 gatcggttat tactttatca accaacgtaa tacaagtaaa aatattcgga cgggggcgac
     3481 gaaagaatga agcaactgct gaaaattttt gtgccagtca ttgttgtcgc actcctaatg
     3541 atgctacttg caacaacgat gaaccgctct gagggctatg ctgggagcaa tacgctgact
     3601 atttataact ggggcgatta cattgatcca tcgctcatta ctaaatttga aaaagaaaca
     3661 ggcatcaagg tcatttacca aacatttgat tctaatgaag cgatgatgac gaaaattgag
     3721 caaggtggaa cgacctttga tattgcggtg ccaagtgatt acgcgattag caaaatgaaa
     3781 gaagaaaatt tgttgatccc acttgatcat tccaaattac caaatgaaaa ataccttgat
     3841 ccgcgtttta tggatttatc gtttgatgat gataataaat attcgatgcc ttatttctgg
     3901 ggaacgcttg gcattattta taataaagaa atgttcccgg ataaaaattt cgatacgtgg
     3961 aatgcgctat ttgatcccga attgaaaaac caaattttgc tgattgatgg ggcgcgtgaa
     4021 gtgatggggc ttgggctgaa tagtctcggt tactcactga acgatacgaa taaagctcac
     4081 ctacaagctg ccagagacaa gctagaaacg atgacaccga atgtaaaagc aattgttggc
     4141 gatgagatta aacttctcat ggcggacaat gaggcgggtg tcgcggttac tttctccgga
     4201 gaagcggcgg aaatgttaag tgaaaatgaa gatttagaat acgtaattcc aaaagacggc
     4261 tccaatttat ggttcgacaa catggtcatc ccaaaaacgg cgaaaaatgt cgatggcgcg
     4321 cataaattta ttaacttcat gctaaaacca gagaatgcgg caattaacgc tgaatatgtt
     4381 ggctatgcaa caccaaatgc aaaagctgtc gaattgttac caaaagaaat ttcgagtgat
     4441 gaacgttttt atccggatat ggatgaactg aataatttag aagtatatga taacctcggt
     4501 aaacgaatgc tgtcgtatta taatgaatta tttttggagt ttaagatgta ccggaaataa
     4561 agccaccagt atcttcacgt gagttcacac caaagtcaaa acacgaacat taagcatata
     4621 acttgtggaa tagatcagct atccgctaaa ataatgttac gcaatttttt tcgaaaagga
     4681 gaaatggtta tgactaagga gaaagtgtta tggggttacg atgaaaagac tgggccagaa
     4741 atgtgggggc atatctgctc tgactttgaa atcgcacata ctggaaaggc acaatcgcca
     4801 gtagatattg aacaagctga cgttgtgaaa ttaaaaccat caacaatgaa attttactat
     4861 aaagaaacag actatacgat tagaagaatt gaacaatcgg tgcatgtttt tccgcatgac
     4921 aaagaacaag ggttacgctt taacggcgag tattatccgc ttgtatcgtt ccatgcacat
     4981 attccggcgg agcatttgct tgacggttat gtatatccga ttgaatggca ttttgttcat
     5041 gaaaaaccag acggcacaac gcttgtaatg agtgcttgga tggaaattga taatacaaat
     5101 aatgtcgaat tcaaagattt accaacctat ttcccagaag tgttcgctga ttttgaaaca
     5161 gaacgggaaa ttactttaga cgtgaatgaa tttatgccag aagaacgtgt tttctatacg
     5221 taccaaggtt cacggacaac accaccaacc gtggaaggcg taacttggat cgtgttaaaa
     5281 aatgcgaaga cacttggcca agaagatttc actgaatttg aaaaagcaat tggtaataca
     5341 agtcgaccag tgcaagattt aaatggtcgt gaaattactt tttataatta aaaaactaga
     5401 aagcctcgct cgaatcttgt atagtataga catagattct gagtggaggc ttctttttat
     5461 gtatgaaaaa gcgagacaga tgatgatcaa agcgcatagt ggccaagttc gcaaaattac
     5521 tggcgagcct tatttttcgc atccgttgaa cgtagcgaga attttgcgcc gcgctggttt
     5581 tcgcgaagaa gttgttgttg cgggattact gcacgatgcc gttgaggata cggaaatgac
     5641 cgatgccgat attcgcgcaa catttggtga tgaagtagct gatttagtag cgtctcatac
     5701 agaaaataaa acgttatctt gggaagaacg aaaagcccat acgattgaac aagtccgcac
     5761 tggcagccta gaagaaaaag cattaatcgt ggcggataag ctagacaatt taacttccgt
     5821 caaatatgcc ttaagctcag aaggaaagtc tgtctggagc tattttaagc gcggctatga
     5881 tctgcaaaaa tggtacaacc aaggcatcaa aaataatatg gaatacggat taaatccatc
     5941 tgaaatccct ccattttttg gtgaatatgc gcgacttgtg aagtggattt ttaagaagta
     6001 aattttgtat ttaaatatct gttaaattag gtatttagaa ttaaaattat aagtttttag
     6061 aaaataagtt tctttttcca gaaatctatt gtaaaatgaa agcgttataa aacttacgag
     6121 aagggaagtt ttttgaatgg tttatggagc aattgaagca ggcggaacta agtttgttgt
     6181 agcaatcgga gaaaagtcag ggaaaattat taagcgcgag agctacccga caacggagcc
     6241 agcagaaaca atgaaagcag tcattcaatt ttttaaacag tatgaggatg aattaaaagc
     6301 aattgggatt ggctcatttg gaccgattga tattcggaaa tcaagtgcta catacggtta
     6361 tatcacgcaa acaccaaaac ttgcatggcg caattatgat atcgttggtg caatgaaaaa
     6421 agaatttaat gtacctattg gttttacgac ggatgttaat gcagccgctt taggagaggt
     6481 aagtttaggc gcggcagcag gtttggatag ttgtatttat ttaacgatcg gaacaggaat
     6541 cggtggtgga gcagttgttt caggcaaaat tcttgaaggc ttctcccacc cagaaatggg
     6601 acatattatg gtgcgccgac ataagcgcga tcgtttcaca ggaagttgcc cgagtcatag
     6661 cgactgttta gaggggcttg cagcaggtgg agcaattgaa aaacgttggg gtcaaaaagc
     6721 ggcagaactt gcggataatg aagaagtgtg gaatttagaa gcacattata tcgcgcaagc
     6781 tttaatgaat tacacgctta tcttatctcc agaaagaatc gtgttaggtg gtggcgtcat
     6841 gaaacaacgc caacttttcc cacttgtccg ccaaaaatta aaagcactcg ttaataatta
     6901 tgtgcaattg ccggatttag atgaatatat cgttcctcca aagttagaag atgacgctgg
     6961 aattactggc tgtgtcttgc tcgctgtgga tgctgaagag tccaattaat ggcgaaaaac
     7021 agctctagtt tatagggctg ttttttgata tactaaattg tgataaaaca aacaagaacg
     7081 caggaggaaa aagatgtcca ttacgaactt attaaatatt aaatatccaa ttatccaagg
     7141 tgcgatggct caaattgcca aagctccact tgtagccgct gtatctaatg caggcggttt
     7201 aggaattatc gcttctggcg gaatgactgc cgacatgcta cgcgaagaaa tcaaaaaaac
     7261 aaaagcactg acagataaac catttggcgt caacttaatg ctaatgatga ccaatattgc
     7321 cgaattaacc gaagtaatta tagaagaaaa agtgggaatc gttacaaccg gagcgggaac
     7381 gccaaaaacg ttcatgccaa tttggaaaga agctggaatt atcgtgattc ccgttgtccc
     7441 atccgtgatg attgctaaac gcatggaaaa aatgggcgca gatgcagtta tcgcagaagg
     7501 aacagaagca ggcggacacg tcggcgaaac aacaacaatg gcacttttac ctcaaatcgt
     7561 ggatgccgtt actatcccag tcattggcgc aggtggaatt gcagatggtc gcggaatcgt
     7621 cgcagcgctt gctctaggtg caaaaggtgt ccaaatcggc acacgcttcc tagcaaccga
     7681 cgaatgccca gtacacccag actttaaagc agccgtgatt aaagcttccg accgcgacac
     7741 aatggttacc ggaagaaaag ccggtgcccc tgttcgctcg attaaaaaca aaatgattaa
     7801 agaatacatc cgtttagaag aagaaaacgc cgatcgcgac acgttagaag agctaacttt
     7861 aggttcttta cgaaaagcag tacaagaagg cgacacagac aacggctccg tcatggccgg
     7921 tcaaatcgct ggcttaatta cagaaatcaa accttgtaaa gatgttattg aagagatgat
     7981 gacagatgct aagaatgtga ttgcagggtt agagttataa aataaaaaca gttattttct
     8041 gcttaataaa gtagagaata actgtttttt tgtagttgcg atgttgttta caaaggtaaa
     8101 gtcaaaaaat gcactaattt gttctgtagt tggctatatt tatacacaga ggttcacaaa
     8161 acgctcacaa aaggaaagta gttacgatgc tataatagaa gggtggaaaa ctagacatag
     8221 agaggaatca ccaagatgag agagataaaa gtcaacgaag caatgttcca aaaacatgcc
     8281 tcgaagctag acagcaaaag cgcgggaagc tatttgccgt taaaaggtgg aaatatggca
     8341 tactcacgag cgaattctat caatcagtta cggtctgcat taattgattt ggtcgatgtg
     8401 gtagaagatt tccaagccgt gacaaagcaa gatgcgggta gattaaagaa aatgggcatg
     8461 gcctatgcga aacaagatca agcgatggga cagaaaataa atcagctgga ggtgcgatag
     8521 atggacagca cgcacagccg gttagaacag caactacaac aagtgaaaaa agcgcaggat
     8581 gttttacaag ataatctggg gcagactaag cgcaaacaag tggaacaaga atggttagaa
     8641 gaagatagtc accaattaga aatggagaaa caaggattat tggacttctt gcgaggcggt
     8701 tggcaagggg aggaagcgaa tggtttccac cgctatctag aagaacaaca acacgaagaa
     8761 gcgatggcat ggcgaaaaga tttgtcggaa aaacgtgttc atttggaaga agaagcgcgg
     8821 actactagag cagaaatgca cgatatagag accaaacaag cctccttgcg aaaggagtgg
     8881 aaccaatgag tcgaatcgac attgcagaac tcaatggctt tcttcaagga ttacgaagca
     8941 gtaatgctga ggctaaaaag atgatacgcg gaattcaaca agcagcaagc aagtatgcgc
     9001 aagataaaag tttaaaaggg caagcagtat cagcttccca aagctatttt gcttccagtt
     9061 atccctctat tgcacaaagt attttagaag ctctagaaga aagtgaagaa cgtctagcac
     9121 aatacatacg cgagtttggt agccaagtcg acagctcgcc ttccgcacga attgatgcgg
     9181 aaatccttca agaagcgatg gcgaaagtgg cgagtttgaa gcgaaaagaa gaagatttac
     9241 atcgccaact cactgcaccg aatacgaaac cggatatgca acaagtctac gtagtccaag
     9301 caagaagtgc gcacacgcaa ttactgcaag ctatcgaaaa agaagatata ctagagaggt
     9361 acatcgcctt tgaacaaagt cacgcccagt tttttagtgc gttaaccgaa ctcattcact
     9421 ccacaggacg agcggtgcaa gagttgaaac aaaatgtgac cttccatgag aaaacaggca
     9481 cctatgctgt acctaaaagc gttcatgcat cgattagttt gatgagaaaa gcgatggata
     9541 aagcacgcaa agaaaacgcc aaagattcct tcccagaagc attcgaagac tatcagttat
     9601 tcgcctatac ttatgtgaat gacaaaggcg aaaccgtcac gatgtggcta ttggaacgga
     9661 atggcaaacg tgccagtaat aaagaactcc aagcttttct agaggagaac ggagccgagt
     9721 tagaccctat tctgtacaca aatctttccg gtgatgaact agagcgcaaa gtaaatgatg
     9781 catggaaaga cggcgtcaac tacttaaatg gtcaaaaagt aaccgggttt tccgaggcga
     9841 cactgaggtc ctctgcttac gtagctagcg tgaaggatgc gatggatgac gctggactaa
     9901 ccgatatggc attaggatta ggctttggta ttgcggcggc gaggaataaa aaaataatag
     9961 ctaagaaatc agaaaaagta gaagttgatc ttggaagata ttctgtagca accttaaata
    10021 gagatcaagc acgattagtg gttgaacatc ttttagaaag aggagaaata agcttaaaag
    10081 atttgggtta tataatacca aaaggaacac caaacacttt taaaactaca gataccttga
    10141 agaatggtgc taagtatgaa tttcaattag ctgatggaca aaaagcgata attaggtggc
    10201 atgaaccaga ccctattgca gctgctaaat ttcctggttc agcttctggt tcaagatgga
    10261 ctgctcaaat ta
//
LOCUS       DABQVC010000107        10218 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.107,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000107 DABQVC010000000
VERSION     DABQVC010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10218
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.107"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            140..3415
                     /locus_tag="IBJ56_001846"
     CDS             140..3415
                     /locus_tag="IBJ56_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding protein"
                     /protein_id="HAM3418098.1"
                     /translation="MKRKGKKSSLIFILTILIFSCLSGFGTNVFAMDGEYHSPYGDDD
                     LYTVQPTERSPRDPKAGEDVTLNITTWPIEDGQNVWVEWTKNGVAQENVTAAYDYNSG
                     NNTYWKADLGKFEKGDEITYTTKGSTDGGTAYESGPFTFYVTDWEYVQDVSSVVDNGD
                     SITLNMTATAGEFTPKLYLSFEDLDTLRMELSPTGKETGHAGKTGYTVDDGADKVTVT
                     TEDLRVEIQKSPYRMEVYQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFMTPSDE
                     AFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGMYVNSDFH
                     SQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGKTTLLPKWA
                     FGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNG
                     EAFSYDDFTFNGKWTDPKAMVDSVHDAGMNIVLWQVPVLKDDGTVYEQRDNDEAYMIS
                     QGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDG
                     GEMVWGRDTTFSNGEKGQEMRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSG
                     IYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDMAGFTGDYPTAELYKRATAMAAF
                     APIMQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNLLPYIYTAAKDT
                     ADNGKSMMRQMAMDYPEDINARDLDEQYMFGDDLLVAPIVQEGQTEKEVYLPEGEWVD
                     LWNGGIHPGGETISYYADVDTLPVFAKAGAIIPMNMTDGYQLGQNVGNDLKSYDNLTF
                     RVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADETTMQVFSTEPTSV
                     TIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAE
                     FAHLTNVSTASDHAGYTGTGFVAGFDAEKEAVEFDVDAVDGASDYTMEVRYSAGVEDA
                     TRTVYINGKKQQITLPKTADWDTWSTIEVPVTLQAGNNQVVFDFEADDTAGINFDHVV
                     FKK"
     gene            3476..4420
                     /locus_tag="IBJ56_001847"
     CDS             3476..4420
                     /locus_tag="IBJ56_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo2445 family class 3 internalin"
                     /protein_id="HAM3418099.1"
                     /translation="MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIA
                     EAIAGELDKDSVNDTITQADLDTMTLIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSN
                     NIGELPDLSDALPALENIEANGANITLFPDANYPNLTNADLSQNNFGFNIPKFVGMEG
                     LVSINMEDAGLSGYVAEDIWMNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQT
                     ATYPHTTIKQGENLEVFVPFIYQALDFIAPSRHDLIIIKDNGRTLYEPPYPTYDGSYM
                     YKIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE"
     gene            4435..8367
                     /locus_tag="IBJ56_001848"
     CDS             4435..8367
                     /locus_tag="IBJ56_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5110 domain-containing protein"
                     /protein_id="HAM3418100.1"
                     /translation="MKKGMKQVCVSMAVVPLVWLNLGITQPLQVEVKAEETKEKEVKQ
                     EANTGAAKQLSKEEYAKLSAEEGLGNVLEATVTDNVITLKIDNGDEAEDDYLEISPLA
                     NNLLKVNLRPRNIENSPSTPMIDPNATFTAIGATIDLESDPMIISTDECTLEIAKEPA
                     RMTFKDKNGKTLLSESADGGIFDGGVRFKRGASDHVYGAYGISFSDGDLGMERDNTAA
                     DSNKTAQAGQQGNAGGPFMWSTAGYGLLVDSDGGYPYSVSDEEKLEFYYGDTVVEGRR
                     YVKENVEMYLMSGEPEEIMSSYADVTGHTPMMPKWSLGFSNFEWGTNETEFRENINTY
                     RAKGIPIDSFAFDYDWKFYGDPTYGGDYGEFAWNTENFPSAKDTTLKSDMDALGVKMI
                     GITKPRVVTNLEDGTATQQGKDAEANGYWYPGQSAYEDYAFPVTVRSIDPYNEDERNW
                     WWSHSEDALDKGIVGWWNDETDKVSSNGADYWFGNFTTGFTSEAMYEGQRDYTNERVW
                     QTGRTFYPGAQRYSTSTWSGDIGVQWKKGEVIDWANGMQEQPSTMLSTINLGQTKWGM
                     DTGGFNANSGQVLNPDPELYSRWMEFSSLVPVFRTHGNQNQQRQPWFYGGTAEEVAKS
                     SMTWRYSMIPYMYAYERQAYDSGVGLVQPLTFDNPTDENVVNLTDEWMFGDGLLVAPV
                     LEEGAGSRDIYLPAGTWIDYNRGDVYEGNQTISYEVNDDDWTDVPMFVKQGAIMPMQQ
                     PQNYVGESAVKTIYLDTFASDKETSFTHYDDDGKSFDYEKDTYLKQKMTTSKTADTST
                     FTIGAKEGSYKADTENYIVKLHGNAAESVQVNGADSKVYDDLSALENADGSGYAVGSD
                     VYGAVTYVKVPAQADADTVITTSGSASVVQTGTYEMETGSNFADTVADKPVAEKTYVD
                     GYDKDGAGTTIYANVKDSGDYNVDLTYKNASADNQSLSIFVNGDYVKQTTLKPNTDWS
                     VQSEALPLSAGKNSISYKVVTDTGDKADQVSLDKVNIGFTPTVAKVEAEEADLAGTLK
                     VANDHWFYSGEGFVGGFGAAGDEIKFEVDVPADGEYVLNTRTANGTGMPQTLDLYTNG
                     DYNSRVTFPSEGENWNIWSDTEKAVNLKAGTNKITFLRDGETTGNVNIDRILVSAEPI
                     NSPVQSEVNLLDNGGFERDAAATTNWVESHPDGQDKAYGVDSGSGVNPPESPAFGKQS
                     AYFYLPGAYKQTLAQQIAVPVNNANYDVEAWVKVSNDDAAKAQMTVNNYDSSDGKTID
                     LVADDVWHYVTMKDVKVTTGNINTSFQMDSPGGTSIHIDNVRVMPSAE"
     gene            8418..9479
                     /locus_tag="IBJ56_001849"
     CDS             8418..9479
                     /locus_tag="IBJ56_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418101.1"
                     /translation="MKNLFRLFLVFSIVIIGVVSFKAIDASANETDVYPLPARIIDVF
                     PDENLAEDMVENFGKKDVTDVITQDDVDAVTSLGLGYFTNYLTDEDLQMLGNAYFTNV
                     NNIMIYPTQTMFTGFPDLPTLPKLDTLRAEGNLSSEVLPENITVPDYQNYPELKYLDL
                     SNRTIVGGLPNFSNIPKLETLLMSSCGLASEDVPDFTNLKNLQKVNFQTNQYRTEMTD
                     FTYLDSLVSMDLSYNYLNVLPPTIVDKVIVLGQIGTLPDQNVVFGEDTNITLPVYTQL
                     DDLGRISGFQEVWIRDSNEKEIYNVAKVDYDEVTKQIIVPTNNLDKGEYTIGIDFNGI
                     EPYIEEGEVMNYSVKITIN"
     gene            9595..9964
                     /gene="ssrA"
                     /locus_tag="IBJ56_001850"
     tmRNA           9595..9964
                     /gene="ssrA"
                     /locus_tag="IBJ56_001850"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
BASE COUNT         3404 a         1707 c         2286 g         2821 t
ORIGIN      
        1 tagtatatct gtgaaagcat tataacatta tgtgattatt tctacaatcg ccgatatgca
       61 aaaattaata attttgcgaa ataacacatc aaaagtagta tgtttttagt aaaaatatac
      121 attaagggag gaaagagaga tgaagcgaaa gggaaagaaa tctagtttaa ttttcatttt
      181 gaccatacta atatttagtt gtttaagtgg atttgggaca aacgttttcg cgatggatgg
      241 tgaatatcac tcaccatatg gagatgatga tttatatact gtccaaccaa cagaacgttc
      301 tcctagagat cccaaagctg gtgaagatgt gacattaaat attactacct ggccaattga
      361 agatggacaa aatgtttggg tagaatggac taaaaacggg gtagcacaag agaatgttac
      421 agcagcttat gattataata gcgggaacaa tacttactgg aaagcagatt taggaaaatt
      481 tgaaaaaggc gatgaaatca cttatacaac aaaaggctct actgacggag gaactgctta
      541 tgaaagtggt ccgtttacat tttacgtgac agactgggag tatgtgcaag atgttagtag
      601 cgttgtagat aatggagatt ctattacatt aaatatgaca gccactgcag gtgaatttac
      661 tccaaaatta tatctttcat ttgaggattt agatacgctt cgtatggagc tatcaccaac
      721 cggtaaagaa actggacatg ctggaaaaac tggttacaca gtagatgatg gtgcagataa
      781 agtaacagtt acaacggagg atttacgagt agaaattcaa aaatctcctt accgcatgga
      841 agtgtaccag gcagacggaa ctttacttac aagcgaatat acaactgcca acagcttagg
      901 ttggttaaca gatggaaaaa atgtcatcaa tcaatatcaa aataacttta tgacaccgag
      961 cgacgaagca ttttatggtt ttggtgaacg ttatgacacg attaaccaac gcggaaaaga
     1021 tgtagagaca tacgtataca atgagtatca agatcaagcg cagacagaaa gaacctattt
     1081 agcggtacca ttttttgtaa gtgctaataa atacgggatg tatgtcaatt ctgatttcca
     1141 ttcacagttc caaatggctt ctaaagtaga agataaatat agttttgtat tggacaatga
     1201 tggcgatatg acgaatatgc ttgattacta tgttattagc gggaaagatc aaaatgatat
     1261 cgtaaataac tacacggata taacagggaa aacgactttg ctaccaaaat gggcttttgg
     1321 actttggatg tcagcaaacg agtgggatag agaatccgat gtaagctctg cactttctaa
     1381 tgcaaaagca aatgatattc cagcaactgg ctttgtatta gaacaatgga gtgatgaaga
     1441 aacttactat atttggaaca atgcgaccta tacagcaaag aaaaacgggg aagcatttag
     1501 ctatgacgat tttactttca acgggaaatg gactgatcct aaagctatgg tggatagtgt
     1561 ccatgatgca ggtatgaata tcgttttatg gcaagttcca gtattaaaag atgacggtac
     1621 agtatatgaa caaagagata atgatgaagc atacatgata agccaagggt atagtgcgga
     1681 cgatggaaca ggggctcctt accgagttcc ggcatctcag tggtttggaa atgggatatt
     1741 actagatttc actaataaag atgctgtaga ttggtggacg tcccagcgtg agtatttatt
     1801 aacagaagta gggattgacg gatttaagac agatggcggc gagatggtgt ggggacgtga
     1861 taccaccttc tctaacgggg aaaaaggaca agaaatgaga aaccgttatc caactgacta
     1921 cgtttcaagt tattttgatt ttgcgaaaag tattaatcca gaagcagttt cgtttagtcg
     1981 ttcaggaact tctggagcac aaaaatctgg tatttactgg tcaggagatc aaacttccac
     2041 atttgactct ttccaagctt cattaaaagc tggacttagt gcttcaactt caggtgtttc
     2101 ttactgggcg tgggatatgg ctggatttac gggagactat ccaacggcag aactatataa
     2161 acgcgcaact gcgatggcag cttttgcacc gattatgcaa ttccactcgg aaaaatcaga
     2221 tccatcgcca agtgaagaac gctcaccttg gaacgcggta gctagaacag gcgatgaaac
     2281 cattttaccg acattccaaa aatatctata cacacgaatg aatttacttc cttatattta
     2341 tacagcggca aaagatacgg cggataatgg taaatcgatg atgcgccaaa tggccatgga
     2401 ttatccggaa gatatcaatg cgcgtgattt agatgaacag tatatgttcg gtgacgattt
     2461 acttgtagcg ccaatcgttc aagaaggtca aacagaaaaa gaagtttatc taccagaagg
     2521 tgaatgggtt gatctttgga acggcggaat tcatccaggt ggcgaaacca tttcgtatta
     2581 tgcagatgta gatacgcttc ctgtatttgc aaaagctgga gcgattattc cgatgaatat
     2641 gacagatggc taccaacttg gccaaaatgt cggaaacgat ttaaaatcct atgataattt
     2701 aacattccga gtttatccat ctggagatag cgaatatagt ttctatgatg atgtaaacgg
     2761 cggagaaatg cgtgacatca gtgtttctga agactttgca aatgaaaaag tttccgtaga
     2821 tcttccagca atggcggatg aaacaacgat gcaagttttc agtacagaac ctacaagtgt
     2881 aacgattgac ggggcagatg tagctaaagc ggatacgcta gatgcattta acgaagcaac
     2941 gacaggttac tactatgata cagtacaaaa cttaacatat gtaaaagcag cggcaaaaga
     3001 tgccaaacaa gcaatcgtat taaacggtgt aaatcatgca ccatacgaag cggaatttgc
     3061 tcatctgaca aatgtaagta ctgcaagtga tcacgcggga tatactggta ctggttttgt
     3121 agccggcttt gatgcagaaa aagaagcggt agagtttgat gtagacgcag tagatggtgc
     3181 ttctgattat acaatggaag ttcgttatag tgctggcgta gaagatgcaa ctagaaccgt
     3241 atatatcaac ggtaaaaaac aacaaattac tttaccgaaa acggctgatt gggatacttg
     3301 gagcacgata gaagttccag taaccttgca agctggtaat aaccaagttg tatttgattt
     3361 tgaagcagat gatacagcgg gaataaattt tgaccatgta gtatttaaga aataaatcca
     3421 ataagccacc cttttatgga tagagagggt ggctatgttg aaaggattga actgaatgaa
     3481 aaaaataatt gggctagcat ttatagcttt ttgttgcata ttatttgcac caactataaa
     3541 agcacaagcg gatacagttc ccttaccagc gcctattatt gaggcttttc ctgtggaagc
     3601 gatagcggag gcgattgcgg gagaactaga taaagattct gtaaatgaca cgattacgca
     3661 agcagatttg gatacaatga ctcttattcc tttgccctca ttgggtttaa cgggggaaga
     3721 cttaagcgta ctaaacaatg aagtatttac aaatgcgatt gaattagcga tttggagtaa
     3781 taatattgga gaactgcctg atttatctga tgcgcttcct gctttagaaa atattgaagc
     3841 aaatggggct aatattactc tttttccaga tgcaaactat cctaacttaa ccaatgctga
     3901 tttgagtcaa aataattttg gctttaatat tccaaaattt gttggaatgg aaggactagt
     3961 aagtattaat atggaggatg ctggactttc tggttatgta gcggaagata tttggatgaa
     4021 tatgcctaac ttagattcac tacttcttaa tgagaatcat ttaatttcta ttccggaaga
     4081 tatctttcta tcagaacaat taagtacaca ttcatttgct aaccagacag caacttatcc
     4141 tcacacaacg attaaacaag gagagaactt ggaagttttt gttcctttta tttaccaagc
     4201 attagatttt atcgcaccaa gcagacacga tttaattatt attaaggaca atggtagaac
     4261 gctttatgaa ccaccttatc cgacctatga tggttcatac atgtacaaga ttgaaacagc
     4321 tggcttacaa ccgggagagc atttgctaga aatttcatta ggttataact ctggagaata
     4381 tacgggttgg tatgattttc cagtaactat tacagaataa aaaggggcga gatgatgaaa
     4441 aaaggtatga aacaagtttg tgtcagtatg gctgttgtac cactagtttg gctgaattta
     4501 gggataactc agccgttaca agtggaagtg aaggcggaag aaacgaaaga aaaagaagtg
     4561 aaacaagaag cgaatacagg agccgcgaag caacttagca aagaagaata tgcgaaatta
     4621 agtgcggagg aagggcttgg aaatgtcctt gaagcaacgg tgactgataa tgtcatcacg
     4681 cttaaaattg ataacgggga tgaagcagaa gatgattact tggaaatttc cccgctagcg
     4741 aataatttgc ttaaggtgaa tttgcgacca cgcaatatcg aaaacagtcc atctacacct
     4801 atgattgatc cgaatgcaac tttcacagcg attggtgcga ccattgactt ggaatcagat
     4861 ccgatgataa tttcaacaga tgaatgtacg ctagaaattg ctaaagagcc agcacgaatg
     4921 acttttaaag ataaaaatgg gaaaacgtta ttgtctgaat cagcggacgg cgggattttt
     4981 gatggcggtg ttagatttaa gcgcggcgct tctgaccatg tttatggtgc ctatggaatt
     5041 agttttagtg acggagacct gggcatggaa cgagataata ctgctgccga tagtaataag
     5101 actgcacaag cgggtcagca aggtaatgca ggaggtccgt tcatgtggtc tacagcagga
     5161 tatggcttac ttgtagatag tgatggcggg tacccgtatt ccgtttcaga tgaagaaaaa
     5221 ttagagtttt attacggcga tacagtggtt gaaggccgtc gctacgtgaa agaaaatgta
     5281 gagatgtatt taatgtctgg tgagcccgaa gaaattatgt cttcttatgc tgatgtaaca
     5341 gggcatactc caatgatgcc aaaatggtcg cttggattct ctaactttga gtggggaaca
     5401 aatgaaacag aatttagaga aaacattaat acgtatcgtg cgaaagggat tccgattgat
     5461 tccttcgcgt ttgattatga ttggaaattc tacggagatc ctacgtatgg tggcgattat
     5521 ggcgagtttg cttggaatac agaaaacttc ccatcagcaa aagacacaac gttaaaatcc
     5581 gatatggatg cacttggtgt aaaaatgatt gggattacaa aaccgcgtgt cgtaactaat
     5641 ttagaagatg gaacagccac gcaacaaggg aaagatgcag aagcaaatgg ttactggtat
     5701 ccagggcaat ctgcgtatga agactatgca ttccctgtaa cggtaagaag tattgaccca
     5761 tacaacgaag atgaacgtaa ttggtggtgg tcacattctg aggatgccct agataaagga
     5821 attgtcggtt ggtggaatga tgaaacagac aaagtatctt ctaatggagc cgattattgg
     5881 tttggtaatt tcacaactgg atttacatca gaagctatgt atgaaggcca acgcgactat
     5941 acaaatgaac gtgtttggca aacaggaaga accttctacc caggcgcaca gcgttattct
     6001 acttctactt ggtccggcga tatcggcgtt cagtggaaaa aaggcgaagt tattgactgg
     6061 gcaaatggga tgcaagaaca acctagtaca atgctttcga caattaattt aggacagaca
     6121 aaatggggca tggatacagg tggtttcaat gccaattcgg gccaagtgtt aaacccggac
     6181 ccagaacttt atagtcgttg gatggaattt agttctctag ttccagtttt ccgtacgcat
     6241 gggaatcaaa atcaacaacg tcaaccttgg ttctatggtg gcacggcgga agaagttgct
     6301 aaaagtagca tgacttggcg ctactcaatg attccttata tgtatgctta tgaacgtcaa
     6361 gcatatgact ctggtgttgg tctagttcaa ccacttacgt ttgataatcc tactgatgaa
     6421 aatgtggtta atttaacaga tgagtggatg tttggtgatg gattacttgt ggcacctgtt
     6481 ttagaagaag gagcgggttc tcgtgatatt tatttaccag caggaacatg gattgactac
     6541 aaccgtggcg acgtatacga aggaaatcaa acaatcagtt atgaagtgaa tgatgacgac
     6601 tggacagatg tgccgatgtt tgttaaacaa ggtgccatta tgccaatgca acaaccacaa
     6661 aactatgttg gcgaatccgc agtcaaaaca atttatttag acacttttgc atcagataaa
     6721 gagacatcct ttacacatta cgatgacgac ggaaaatctt ttgattatga aaaagatacc
     6781 tatttaaaac aaaaaatgac tacttcaaaa actgctgata ctagtacttt cacgattggt
     6841 gcgaaagaag gaagttataa agcagacaca gagaattaca ttgtaaaact acacggaaat
     6901 gcggctgaaa gcgtccaagt aaatggcgca gatagcaaag tttatgacga tttatccgct
     6961 ttagaaaatg ctgatggtag cggatatgct gtaggtagcg atgtatacgg agcagtaaca
     7021 tacgtaaaag taccagctca agctgatgca gatactgtca ttacaacttc aggttctgca
     7081 agtgtcgtac aaacaggaac atacgaaatg gaaacaggat ccaattttgc tgatacagtt
     7141 gctgataaac cggttgctga aaaaacgtat gtggatggct acgataaaga cggcgccgga
     7201 actactatct atgcaaatgt aaaagactct ggtgattata atgtggacct aacttacaaa
     7261 aatgcttccg cagataacca atcattaagt atttttgtca atggtgatta tgtaaaacaa
     7321 accacgctaa aaccaaacac cgattggtca gttcagtccg aagcattacc actttcagca
     7381 gggaaaaata gtatttctta taaagtggta acggacacag gcgataaagc tgatcaagta
     7441 tcactagaca aagtaaatat tggtttcaca ccaactgtag caaaagtcga agcagaagaa
     7501 gcggaccttg ccggcacttt aaaagtggcg aacgatcact ggttctatag tggagaaggt
     7561 tttgttggtg gatttggagc agcaggagat gaaatcaagt ttgaagtgga tgtaccagct
     7621 gacggcgagt acgtactaaa cacacgaaca gcaaatggaa ctggcatgcc acaaacactc
     7681 gatttatata cgaatggtga ctacaactct cgcgtaactt tcccttccga aggtgaaaac
     7741 tggaatattt ggtcagatac agaaaaagct gtgaacttaa aagcaggaac caataaaatt
     7801 accttcctaa gagacggcga aactactggt aatgtaaata tcgatagaat tcttgtttcg
     7861 gctgagccaa tcaattcacc agtacagtcg gaagtaaatc tactcgataa cggcggattt
     7921 gagcgggatg cagcggcaac gaccaattgg gtagagtctc atcctgatgg gcaagacaaa
     7981 gcatacggcg ttgatagtgg ctcaggtgtc aatcctccag aatcaccagc atttggtaaa
     8041 cagagcgctt atttctattt acctggcgct tacaaacaaa cactcgctca acaaatcgca
     8101 gttccagtta ataatgcgaa ttacgacgtt gaagcatggg tgaaagtaag caacgatgat
     8161 gcagcaaaag cacaaatgac ggttaataat tatgatagca gcgatggtaa aacaattgac
     8221 ttagttgcag atgacgtttg gcattatgta acaatgaagg atgtcaaagt aacaacaggc
     8281 aatatcaata ctagtttcca aatggattcc ccaggaggaa cgagcattca cattgataat
     8341 gtaagagtta tgccatccgc agaataatat agaagggcgg ggaatttccc cgtcctttat
     8401 aaattggagg agataggatg aaaaatctat ttagactatt cttggtattt agcatagtta
     8461 ttatcggggt tgtttcattt aaagcgatag atgcaagtgc aaatgagaca gatgtatatc
     8521 ctctaccagc tagaataatt gatgttttcc cagatgaaaa tttagcagaa gatatggtgg
     8581 agaactttgg taaaaaagat gtgacagatg taattaccca agatgatgtg gatgcggtga
     8641 catctctagg gttgggttat tttaccaatt acctcacaga tgaagattta caaatgctag
     8701 gaaatgctta ttttaccaat gtaaataata ttatgattta tcctacacaa accatgttta
     8761 ctggctttcc tgatttacca accttgccca aattagatac tttgagagca gaaggaaatc
     8821 tatcaagcga ggtactacct gaaaacatta cagttcccga ttatcaaaac tacccagaat
     8881 taaagtatct tgatcttagt aatcgaacta ttgttggggg cttacctaac ttttctaata
     8941 ttcctaaatt agaaaccttg ttgatgagca gttgtggact agcttcggaa gacgttccag
     9001 attttacaaa cttgaaaaat ttgcagaaag taaattttca aacgaaccaa tatagaacag
     9061 aaatgacgga tttcacttat ttggacagtt tggtaagtat ggatttaagt tataattatt
     9121 taaatgtgtt gccgcctact attgtggata aagtaatcgt actaggtcaa atcggaactt
     9181 tgccagatca aaatgttgtt tttggtgagg atacaaatat cacgctacca gtttatacgc
     9241 aactagatga tttaggtaga attagtggtt ttcaagaagt ttggattcgt gattcaaatg
     9301 agaaggaaat ttacaacgtg gcaaaagtgg attacgacga agtgacgaag cagattattg
     9361 tgccaacaaa taaccttgat aaaggtgaat acactattgg aattgatttt aatggaatag
     9421 agccttatat agaagaaggc gaagttatga attactcagt aaaaataacc attaattaat
     9481 ggaaaacttg tgacatgcta aataatagtt gcgcatttgg ctatgtcaca agttttttct
     9541 gtttgtaaag cctcgttttt tcctgtataa taactactgt tagactttaa ctctggggat
     9601 gttacggatt cgacagggat agttcgagct tgagttgcga gtcgggggga tcgtcctcgt
     9661 tatcaacgtc aaagccaata ataactggca aagaaaaaca aaacctagct ttcgctgcct
     9721 aataagcagt agcatagctg atcctccgtg catcgcccat gtgctacggt aagggtctca
     9781 ctctaagtgg gctacactag ttaatctccg tctggggtta aatagaagag cttaatcaga
     9841 ctagctgaat ggaagcctgt taccgggccg atgtttatgc gaaatgctaa tacggtgact
     9901 acgctcgtag atatttaagt gccgatattt ctggacgtgg gttcgactcc caccatctcc
     9961 atattttatg gaaactgaga agtgatacaa actgcttttt taagctgttt gtatcacttt
    10021 tttatttgga tgctaaacga tggagtcaag aaaataatta cgattttaga ataatcatgt
    10081 ggattgaata aatatacata tccattcaaa tgtaattttt tctttactac taaaattaat
    10141 aaaaaatgac aaatgaatag tattaaatga atgttttatg gcgctttttg ctgtttgatt
    10201 tacaaactga ataatttt
//
LOCUS       DABQVC010000108        10186 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.108,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000108 DABQVC010000000
VERSION     DABQVC010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10186
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.108"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            92..763
                     /locus_tag="IBJ56_001851"
     CDS             92..763
                     /locus_tag="IBJ56_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3418102.1"
                     /translation="MDALFNYKEFVRLSHEGNIKYEKLKVPKHTDLVNTASQRNNHVY
                     LIVEGFVSISMNPQSSSIYTVLGKGSFVNYYSLFQGNVDDFLFTTISPCTIYKYSFKD
                     LEYFLSMFPENFGFQFFIMRDLARHAFFKSLFAETSSSDKLELSFSNMGKLHGTLYEK
                     DSVILPKEMRTSTIAAYSNLSKSSFYKQLTLLKEQGKIWKNGREWVVRNKELYDYVKA
                     RQFVD"
     gene            complement(907..1458)
                     /gene="nrdG"
                     /locus_tag="IBJ56_001852"
     CDS             complement(907..1458)
                     /gene="nrdG"
                     /locus_tag="IBJ56_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HAM3418103.1"
                     /translation="MNNPKPCEWKSNELSRGYIADYKAFNFVDGEGVRCSLYVSGCPF
                     HCEGCYNKAAQSFKYGKPYTKELEDDILKDIGHESVQGLTLLGGEPFLNTATCLSVVK
                     RIRATYGETKDIWSWTGYTWDEMMQETADKLELLSLIDVLVDGRFEQKLFDPNLAFRG
                     SSNQRIIDVQKSFATGEVVLYEL"
     gene            complement(1451..3601)
                     /gene="nrdD"
                     /locus_tag="IBJ56_001853"
     CDS             complement(1451..3601)
                     /gene="nrdD"
                     /locus_tag="IBJ56_001853"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HAM3418104.1"
                     /translation="MYVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETF
                     LEEILLEVVSELPNKADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENIT
                     DMHKSVEKLLQKDKTVVNENANKDATVFNTQRDLTAGAVAKSYALKYMLPKHVSNAHL
                     KGEIHFHDLDYSPYHAMTNCCLIDIEGMLSKGFTIGNANVESPKSIQTATAQIAQIIA
                     NVASSQYGGCSVDRIDEVLSVYARLNFEKHKKDAMEWVVPEKQEGYAAEKTRKDIYDA
                     MQSLEYEINTLYTSNGQTPFVTLGFGLGEDWFAREIQKAILKVRIGGVGKDKHTAIFP
                     KLVFSIRRGTNLNAEDPNYDIKQLALECSSKRMYPDVLNYDSLVRLTGDFKVPMGCRS
                     FLPAWENENGEHVNAGRNNLGVVTLNIPRIAIQSGGDKERFWEIFHERMKTVKDALLF
                     RLNRVRQARPENAPILYKYGAFGKRLQDGENVDQLFNKERSTISIGYIGLYEAATVFY
                     GGEWEGDKEAKNFTLDILKELKGYADNWKDEYGYWFSVYSTPSESLTDRFNRLDKEKY
                     GVIKDITDKDYYQNSFHYDVRKKITPFEKIDFEKDYPEFCSGGFIHYCEYPKMVHNTK
                     ALEAVWDYSYDRVAYLGTNTPIDKCYECNFEGEFVPTEEGFKCPSCGNTDPEKADVVK
                     RTCGYLGNPMKRPMVHGRHVEISNRVKHMENLGE"
     gene            3892..4992
                     /gene="ugpC"
                     /locus_tag="IBJ56_001854"
     CDS             3892..4992
                     /gene="ugpC"
                     /locus_tag="IBJ56_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HAM3418105.1"
                     /translation="MAQLSLEHIYKIYDNKVTAVSDFNLEIDDKEFIVFVGPSGCGKS
                     TTLRMIAGLEEISKGELSIDGKVMNNVAPKDRDIAMVFQNYALYPHMTVYDNMAFGLK
                     LRKMPKDEIKKRVEHAANILGLTEYLKRKPSALSGGQRQRVALGRAIVRDAKVFLMDE
                     PLSNLDAKLRVQMRAEITKLHQQLDTTMIYVTHDQTEAMTMATRIVIMKDGVIQQVGS
                     PKQVYDHPVNMFVAGFIGSPAMNFFKGRLEGSNFIGDDFTIEVPEGKLKLLKDRGFDG
                     KDIVFGIRPEDIHDEPIVIEANPGYTFKATTIVAELTGAEFMLHSRVGTHEFVARVDA
                     RSEHQPNEVLTLAFEMSKSHFFDPETEDNLTD"
     gene            complement(5030..6001)
                     /locus_tag="IBJ56_001855"
     CDS             complement(5030..6001)
                     /locus_tag="IBJ56_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAM3418106.1"
                     /translation="MGNLNWAILGPGSIAHEFAEGMRGMNREIYAVGARSLEKGQAFA
                     SQYGIENVYDDFDKMLADPAIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSE
                     ELNEINVLAKEKGLIVKEAMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDP
                     KNRFYNMDLAGGALLDIGTYALSFARYFLSETPDEVLTTMKKFETGVDEQSGILLKNK
                     EEELAVVSLSFRAKMPKRGVIACEEGFITVDEYPRASRATVTHTATGKVEEIEVGETS
                     KALEYEIIAMEESIATGENTTYQLTNDVITIMSDVRTQWGIKFPFEK"
     gene            6117..6938
                     /locus_tag="IBJ56_001856"
     CDS             6117..6938
                     /locus_tag="IBJ56_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3418107.1"
                     /translation="MTKKYLICSDIDGTLLRQDQTVSKKTRDLIQTLEKDGHIFSIST
                     GRMYRSAREVGFQVSNSGHVIASNGSYAAIRDEQLLKTTLEEKAIRSTYDIMSDFDLP
                     LFFFSTNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINEKGVFDENMHQFLNAIV
                     VAEDDASKLTEVRAALNEANGIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRER
                     IITFGDGENDIGMLQYAGTGVAMANASDNVKAAADHLTDTNEADGVYKFLKEFIS"
     gene            6955..7797
                     /locus_tag="IBJ56_001857"
     CDS             6955..7797
                     /locus_tag="IBJ56_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAM3418108.1"
                     /translation="MKKGILNVLLVFALIAGLSVPSSMQVEAAAPTIKVHFIDVGQGD
                     AIYIKAPSGEDILIDAGNKGKGKTVVNYLKKLKVKDIEIMIASHSDADNIGGLPEVMN
                     NIKVKSLYAPKSTNTTAAYKNFVNTAKKKKLTIKTAKAGVKLPVKGVNAQFVGPVKTY
                     GKTDRNNWSAVLHVAYKKNTFLFTGDAQTKAENDMIKAKKTLRADVLKVSTQGSKAAT
                     SKAFVNVVKPKYAIISVGKNGYGHPTSQTVNTLTKAKAKVYRTDRNKTVVVTGNGSSY
                     SIGK"
     gene            8055..8708
                     /locus_tag="IBJ56_001858"
     CDS             8055..8708
                     /locus_tag="IBJ56_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3418109.1"
                     /translation="MAYPFNHKEFVAMMEQYNLKSNSITIPEHTILNDLVTENRDCVY
                     LLKSGILAGYIDFDNDKIYSIFTSNFFMGYYTIFDNASLVLTYQTLTECELIIYKKKD
                     IEYSLSLFPENFSFQYTIMRTIAKHGYYKSLLQYRDKKDQLAFVFEMLVKILDIPVED
                     GVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVKLQWRINMEALSEKKQ"
     gene            complement(8755..9258)
                     /locus_tag="IBJ56_001859"
     CDS             complement(8755..9258)
                     /locus_tag="IBJ56_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418110.1"
                     /translation="MKRNYHVKFLNEKDVELAEAVCAASEDYYLMEQDKPASKSDALK
                     IITEIPNGKTRFDKFVLAVLDENEKPIGLVDIVSDYPRKGRWFIGLLLLTPDARHNGL
                     GKVLHQTIKEWANDGGADSLALGVLAENEKGRGFFEYLGYTKEETKQANYGGKEQEVS
                     IFTLAIK"
     gene            9394..>10186
                     /gene="yidA"
                     /locus_tag="IBJ56_001860"
     CDS             9394..>10186
                     /gene="yidA"
                     /locus_tag="IBJ56_001860"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HAM3418111.1"
                     /translation="MYKLIAIDIDGTLLTDDHKVTDEVKEAIRQAKLKGVKVVLCTGR
                     PLVGVENYLTDLELREEGDYVISFNGAFVQDTFTKEVISHLTLGIDDLKEIYQVSLDS
                     NLHMHFFDDKALYTPNREIGKYTIVEAYLTGSQLIYKEIENVPEDFIMSKAMFIEEAP
                     ELEVGIAKIPESFREKYHLVRSTPFYLEILNRDASKGNAVKELSEKLGIKQSEVICIG
                     DQENDVTMLEFAGLGIAMGNAPERIKQLADYTTASNNDSGVAKAIQ"
BASE COUNT         3122 a         1955 c         1849 g         3260 t
ORIGIN      
        1 ggcaatttgg tataattaat atagattaat tttttgttaa ttttgatatt atgtattata
       61 gttaacaaaa aaagtaaagg ggctgctaat aatggatgca ttatttaatt ataaagagtt
      121 tgttcggctt tctcatgaag gcaatattaa atatgaaaaa ttaaaagttc caaaacatac
      181 agatttagta aatactgcct cgcaaagaaa taaccatgtc tatttaattg tagaaggctt
      241 cgtgtctatt tctatgaatc cgcaatctag tagtatttat acagtcttag gtaaaggctc
      301 ttttgtaaat tactatagtt tgttccaagg aaatgtagat gactttctgt ttacaaccat
      361 ttccccgtgc actatttaca aatattcttt taaagattta gagtactttc tttcgatgtt
      421 tccagagaat tttggttttc aatttttcat tatgcgagac ttggcgcgac atgcattctt
      481 caaaagcctt ttcgccgaga ctagttcttc tgataaatta gagctttctt tttctaatat
      541 gggcaaatta cacggaacgc tttatgaaaa agatagtgtt attttaccga aagaaatgcg
      601 aactagtact atcgctgctt atagcaatct atcgaaaagc agtttttaca aacaattaac
      661 ccttttaaaa gaacaaggta agatttggaa aaatggaaga gaatgggttg ttagaaataa
      721 ggaattgtac gattatgtga aagctagaca atttgttgat taaaaaacgc cacctgagtt
      781 atgggtggcg ttttttattt ggattagtac tatcatcatt cttacattgt tgattctatg
      841 cccgcacata tattcaataa gcatccaaag caaaaagaat aagccctcca tcaaagaggg
      901 cctatttcac aactcataca aaaccacttc accagtagca aatgatttct gcacatcaat
      961 aattctttgg ttgctggaac cgcggaatgc taggttgggg tcgaatagtt tttgttcgaa
     1021 gcggccgtct accagaacat ctattaagga tagaagttct agtttgtcgg cggtttcttg
     1081 catcatttcg tcccaggtgt agccggtcca tgaccagata tcttttgttt cgccgtatgt
     1141 cgcgcggatt cgtttcacga cagataggca tgtggcggtg tttagaaatg gttctccgcc
     1201 aagtaaagtg aggccttgga cgctttcatg tccgatgtct tttaggatat cgtcttctaa
     1261 ttctttcgtg taaggtttgc cgtatttaaa tgattgcgca gccttgttgt aacagccttc
     1321 gcagtggaaa ggacatccag atacatatag actgcaccgg acgccctctc cgtcgacaaa
     1381 gttgaatgcc ttatagtcgg cgatataccc tctggataat tcattcgact tccattcaca
     1441 cggttttgga ttattcacct aagttctcca tatgtttcac gcgattgcta atttctacgt
     1501 gacgtccatg aaccattgga cgtttcattg ggttgcctaa atagccacaa gtacgtttta
     1561 caacatctgc tttttcgggg tcggtgttgc cacagcttgg gcatttgaag ccttcttctg
     1621 taggaacaaa ttcaccttca aaattacatt cgtaacattt atcgattggt gtatttgtac
     1681 caaggtaagc tacacgatca taggagtaat cccatacagc ctcaagtgct ttcgtattgt
     1741 gaaccatttt tggatattca caataatgaa tgaatccgcc agagcaaaat tctggataat
     1801 ctttttcaaa atcaattttt tcaaatgggg taattttttt acgaacatca tagtggaaag
     1861 agttttggta gtagtcttta tctgtgatgt ctttaattac accatatttt tctttgtcta
     1921 aacggttaaa acggtcagtt aagctttcac ttggagtcga atatacgcta aaccagtagc
     1981 catattcatc tttccagttg tccgcataac cttttagttc tttcaagata tcaagcgtga
     2041 agttttttgc ttctttgtcg ccttcccatt caccgccgta aaatacagtc gctgcttcat
     2101 aaagaccgat atagccgata gagatagtag aacgttcttt attgaaaagt tgatcaacat
     2161 tttcgccatc ttgtagtcgt ttgccaaatg ctccgtattt atataaaatt ggtgcatttt
     2221 ctggacgtgc ttgacgtacg cggtttaaac ggaaaagtag cgcatctttg acagttttca
     2281 tgcgttcgtg gaaaatttcc cagaaacgtt ctttgtcccc accactttgg atagcgatac
     2341 gtggaatgtt aagtgttaca acaccaagat tgtttcttcc cgcgttcacg tgttcgccgt
     2401 tttcgttttc ccaagctggc aagaacgaac gacagcccat tggtactttg aaatcgcctg
     2461 ttaagcgaac gagtgaatcg tagttgagta catctggata catccgtttc gaggaacact
     2521 ctagcgccaa ttgtttaatg tcataattag gatcttctgc atttaaatta gttccacggc
     2581 gaattgaaaa tactaatttc gggaaaatag ccgtgtgttt atctttacca accccaccaa
     2641 tacgcacttt taggatggct ttttgaattt cacgggcaaa ccaatcttca ccaagaccga
     2701 agcctagtgt tacgaaaggt gtttggccgt tacttgtata taatgtgttg atttcgtatt
     2761 ctaagctttg catcgcatcg taaatatctt tgcgtgtttt ctccgctgca taaccttctt
     2821 gtttttctgg aacgacccat tccatcgcat cttttttatg tttttcaaag ttcaaacgcg
     2881 cgtaaacgga taaaacttca tcaatacggt caaccgaaca gccgccgtac tgtgaacttg
     2941 ctacgtttgc gattatttga gcaatttgtg cggtagcagt ttggatagat ttcgggcttt
     3001 ctacgttggc attaccaatc gtaaatcctt ttgacagcat tccttcgatg tcgattaaac
     3061 aacagttggt catcgcatgg tatgggctgt aatctaaatc gtgaaaatga atttcccctt
     3121 ttaaatgagc gttggatacg tgttttggta gcatgtattt taatgcgtaa ctttttgcta
     3181 cggctcctgc tgtcaaatcg cgttgcgtat taaagacagt cgcgtctttg ttggcatttt
     3241 cgtttactac tgttttgtct ttttgtagta gcttttctac gcttttgtgc atatctgtga
     3301 tgttttcacg ctcatggtcg cgatcatggc ggtactctat gtaagccctc gctacatcag
     3361 gatacgtcga tttcattaaa gtattttcga cgcaatgctg gatttcatcg atggtcatat
     3421 ctgccttgtt aggtaattca cttacaacct caagcaaaat ctcttctaag aaagtctcgt
     3481 cctctaaatt aattgctttc atagatgctt caacggcatt acgaatttta attaaatcaa
     3541 agtttgcttt acggccgtcc ctttttatta ccatttgttc attaagttgt tccacgtaca
     3601 tgataatccc ccactaacta tatattgtgt ctgctttaat aatataacac aagatgaagt
     3661 tttattgtaa tgatatctga ggaatttccg gaattgggac taaagaatta agcgctgtga
     3721 aaaatctttc acataaaagg tcttttgtcc ctttacttct ttttattttt ttgctactta
     3781 tgcaagttgc ccaacagatg aattttttct ttgtgcaaat tgccatagtt tttgtaaagc
     3841 gttttcatat acaatgaaca caagttaaaa aatagaaaga ggcgaagaaa gttggcacaa
     3901 ttatcactag aacatattta taaaatttat gataacaaag taactgcggt atctgacttt
     3961 aatttagaaa tcgatgacaa agaattcatc gtttttgtag gtccatctgg ttgtggtaaa
     4021 tctacaactt tacgtatgat tgctggacta gaagaaattt caaaaggcga actatctatt
     4081 gatggtaaag taatgaacaa tgttgcgcca aaagaccgtg acatcgcaat ggtattccaa
     4141 aactacgcat tatatccgca tatgactgta tatgataata tggcattcgg tttaaaactt
     4201 cgtaaaatgc caaaagacga aattaaaaaa cgtgttgagc atgcagcaaa tattcttggc
     4261 ttaactgaat acttaaaacg taaaccaagt gcactttccg gtggtcaacg tcaacgtgtt
     4321 gctctaggtc gtgcaatcgt tcgtgacgca aaagtcttcc taatggatga accactttcc
     4381 aacttggatg cgaaattacg tgtgcaaatg cgtgcggaaa tcacaaaact tcaccaacaa
     4441 ttagatacta caatgattta cgttacccat gaccaaacag aagcgatgac aatggcaact
     4501 cgtatcgtta tcatgaaaga cggtgttatc caacaagttg gttcaccaaa acaagtttac
     4561 gatcacccag taaatatgtt cgtagccggc tttattggaa gcccagcaat gaacttcttc
     4621 aaagggcgtt tagaaggttc taactttatc ggtgatgatt tcactattga agttccagaa
     4681 ggcaaattaa aacttcttaa agatagaggg tttgacggta aagatatcgt tttcggtatt
     4741 cgtccagaag atattcatga tgagccaatc gttattgaag ctaatcctgg ttatacgttc
     4801 aaagcaacta ctattgttgc cgagcttact ggtgctgaat ttatgcttca tagccgcgtt
     4861 ggtacacatg aattcgtagc acgtgttgat gctcgctcgg aacaccaacc aaacgaagta
     4921 ctgactttag cattcgaaat gtctaaatct cacttcttcg acccagaaac agaagataac
     4981 ttaactgatt aatattctta gaaaaacccg ccaagctcgg cgggttttct tatttttcaa
     5041 aaggaaattt aattccccac tgcgttctaa catcgctcat aatcgtgata acatcatttg
     5101 ttaactgata agtcgtgttt tctcctgtcg cgatgctctc ttccatagct ataatttcat
     5161 attctaaagc tttacttgtt tcaccaacct caatttcttc cacttttcca gttgccgtgt
     5221 gtgtaacagt tgctcggctg gcacgcgggt attcatctac agtgataaat ccttcttcac
     5281 aagcaatgac acctcgtttt ggcattttag cacggaaaga tagcgataca accgctagtt
     5341 cctcttcttt atttttcagt aaaattccgg actgttcgtc cacacctgtt tcgaatttct
     5401 tcatcgtcgt taatacttca tccggcgttt cacttaaaaa ataccgagca aaactaaggg
     5461 catacgtacc aatatcaagt aatgctccac ccgccaaatc catattataa aaacggtttt
     5521 tcggatcttt ttctttggca cttccaaaag caacttgaat aattttcaat ttaccaattg
     5581 ctccagattc cacaatttct cgtaactttt tataaagcgg catatggaat atggtcattg
     5641 cttctttaac gattaagcct ttctctttgg ctagcacatt gatttcatta agttcttcgc
     5701 tacttacagt tatcgctttt tcagctaaaa cgtgtttgcc gttatgtaaa cttttcatga
     5761 taaattcata gtggttagag tgtggtgtag cgatataaac tacatctatc gccggatcag
     5821 caagcatttt gtcaaagtca tcgtatacat tttctattcc gtattgactt gcgaatgctt
     5881 gccccttctc taaactccgt gctcctaccg cataaatttc acggttcatt cctcgcatac
     5941 cttctgcaaa ttcgtgtgca attgaacctg gtccaagaat tgcccagttt aaatttccca
     6001 tcatggaact cctccaaaaa attattttag aactcgataa aaactattgt atcataataa
     6061 ctattccgat tcgcacatgg tatacttaag ttattaacta aaaaggatga ttttatttga
     6121 ctaaaaagta tttgatttgt tccgatatcg atggcacatt actgcgccaa gatcaaactg
     6181 tctctaaaaa aacgcgtgat ttaatccaaa ccttagaaaa agatggccat attttttcta
     6241 tttctacagg acggatgtat cgctctgccc gtgaagttgg cttccaagtg agtaattccg
     6301 gtcatgttat tgcctcaaac ggatcctacg cggctattcg cgatgaacaa ctgcttaaaa
     6361 ccactttaga agagaaggca attcgctcca cttacgatat tatgagcgac ttcgatctac
     6421 cacttttttt cttctctacc aatacacttt tctatacaaa agaaccacct gctttcttcc
     6481 aaaatcttgc tgataaaagt cgcttagata caggacacaa tagtttttcg ctcgtttcta
     6541 ttaatgaaaa aggtgttttt gatgaaaaca tgcatcaatt tttaaatgct attgtcgttg
     6601 cggaagatga tgcctcaaaa ctaaccgaag ttcgcgctgc tctaaatgaa gcgaatggta
     6661 ttagagtcct ttcttcacac cataataatt tagaaatact tcctgctaat tctgacaaaa
     6721 aaacagccgt tgaagcgctt ggaaagcatt acaatattcc acgcgaaaga attattactt
     6781 ttggtgatgg cgaaaatgat attggcatgc tacaatatgc tggaaccggt gttgcgatgg
     6841 caaatgcaag cgataatgtc aaagcagcag cagatcatct tactgacacg aatgaagcag
     6901 atggggttta caaatttcta aaagaattca tttcataaga gaagaggaaa agggatgaaa
     6961 aaagggattt taaacgtatt attagttttt gctttaattg cggggctttc cgtaccaagt
     7021 tctatgcaag ttgaagctgc tgcaccaact ataaaagtgc attttattga tgttggtcaa
     7081 ggagatgcca tttatatcaa agcacctagt ggagaagata ttttaattga tgcaggtaac
     7141 aaaggtaaag ggaaaactgt tgtaaattat ttaaaaaaat taaaagtaaa agatattgag
     7201 ataatgattg cttctcattc agatgcggat aacattggtg gattaccaga agtcatgaat
     7261 aatatcaagg taaaaagcct ttatgcacca aaatccacaa acacaacagc cgcttacaaa
     7321 aattttgtga acacggcgaa aaagaaaaaa ctaaccatta aaaccgcaaa agcaggcgta
     7381 aaactccctg tcaaaggagt aaatgcgcag tttgttggtc ctgttaaaac ttacggaaaa
     7441 acagatcgaa acaactggag tgctgttctc cacgtcgcat ataagaaaaa caccttcctt
     7501 ttcacaggag atgcgcaaac aaaagcagaa aacgatatga ttaaggcaaa gaaaacctta
     7561 cgagctgacg tgttaaaagt aagtacacaa ggttccaaag ctgcaacaag caaagcgttt
     7621 gtcaatgtcg ttaaaccaaa atacgccatt attagcgttg ggaaaaatgg atatggccac
     7681 cccacttcac aaaccgttaa cacattgaca aaagcaaaag cgaaagttta tcgaacagat
     7741 cgtaataaaa ccgtcgttgt aacaggcaac ggctccagtt attctatcgg aaaataattt
     7801 atgcttatac gaaaagccaa taataaagat acgactttat tattggcttt ttccaactat
     7861 gcgtattggt taacctttct gagttagaaa taactcaaat atgacaaaaa tattgcggtt
     7921 acattggcta aaaaagggta ttttcataaa aaagaggttt tttagaagtc tatttttagt
     7981 acttgtgcaa acttttacga tgatacaatg tatttgtatt agtacaactg aatctgaagg
     8041 agacgaagta aaaaatggcc tatccattta atcacaaaga gtttgttgca atgatggaac
     8101 aatacaattt aaaatctaac agcatcacaa tacctgaaca taccattcta aatgatctag
     8161 ttactgaaaa tcgggattgt gtgtatttac ttaaatctgg tatattggcc ggatatattg
     8221 atttcgacaa tgataaaatt tattctattt tcacatctaa ttttttcatg ggatattata
     8281 cgattttcga taatgcatcc cttgttttaa cgtatcaaac actaactgag tgcgaattga
     8341 ttatctacaa gaagaaagat atcgaatact cgctctctct cttccctgaa aactttagct
     8401 tccaatacac aattatgaga actatcgcca aacatggtta ctacaaatca cttttacaat
     8461 atcgcgataa aaaagatcaa ttggcttttg tatttgaaat gcttgtcaaa atcctcgata
     8521 tcccagtgga agacggcgtc gcagtactac caaaatctat tagtacgaca gtcattaaaa
     8581 actactgtac cctgtcgaaa gccttcttct attctcaact taaagaatta aaagaagccg
     8641 ggattatttc aaaagtaaaa ctgcaatggc gtattaacat ggaagctctt tcagaaaaaa
     8701 aacaatagca taaactaaga aaaaggatgc agttttatga gctgcatcct ttttttattt
     8761 aatcgctaaa gtgaaaatac taacttcttg ttcttttccg ccataattag cttgtttggt
     8821 ttcttctttc gtgtagccaa ggtattcaaa gaatccacgc cctttttcat tctcagctaa
     8881 aactcctaag gctaatgaat ctgccccgcc gtcattcgcc cactctttga tcgtttgatg
     8941 aagtactttt ccaaggccgt tatgacgagc atctggcgtt aaaagaagta atccgataaa
     9001 ccagcgccct tttcgcggat agtcagaaac aatatctact aagccgattg gtttttcatt
     9061 ttcatccaat acagctagta caaacttatc gaatcttgtt ttcccgtttg gaatttctgt
     9121 gataattttt aatgcatcac ttttcgatgc aggcttatct tgttccatta aataataatc
     9181 ttcggatgcc gcgcaaacag cttctgcaag ttctacatct ttttcattta aaaatttcac
     9241 atgataatta cgtttcatta tttcactctt ttctttatca agtttccaag tcaatcatgc
     9301 cataaattcc ctgttgtttc aatagatagc cagaaatcca tctgaattta tgctatacta
     9361 gaatgagttt atgatggaaa aggagctagt atattgtata aattaatcgc gattgatatt
     9421 gatggaacac tactgacaga tgatcataag gttacggacg aagtaaaaga agccattcgc
     9481 caagcaaaac taaaaggcgt aaaagtggtt ctttgtactg gacgtccgct tgttggtgta
     9541 gaaaattatc taactgacct tgaattacgt gaggaaggcg attacgttat tagttttaac
     9601 ggcgcattcg ttcaagatac gtttacaaaa gaagttattt ctcacttaac gcttggcatt
     9661 gacgatttaa aagaaattta tcaagtgagt ttagatagca atttgcacat gcatttcttt
     9721 gatgacaaag cgctttatac gccgaaccgt gaaatcggca aatacacgat tgtcgaagct
     9781 tatcttactg gtagccaact gatttataaa gaaatcgaaa acgtgccaga agattttatt
     9841 atgtcgaaag caatgtttat tgaagaagcc cctgagttag aagttggtat tgcgaaaatc
     9901 ccagaatcat tccgcgaaaa atatcatcta gttcgtagca cgcctttcta cttggaaatt
     9961 ctaaatcgtg acgctagtaa aggtaacgcg gtcaaagaac tttccgaaaa acttggcatt
    10021 aagcaaagcg aagttatctg cattggcgac caagaaaatg acgttacaat gcttgaattt
    10081 gctggtcttg gtattgcgat gggcaatgct ccagaaagaa ttaagcaatt agctgactat
    10141 acgactgcat cgaacaatga tagtggtgta gcaaaagcaa ttcaaa
//
LOCUS       DABQVC010000109         9704 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.109,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000109 DABQVC010000000
VERSION     DABQVC010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9704
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.109"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            47..424
                     /gene="dhaM"
                     /locus_tag="IBJ56_001861"
     CDS             47..424
                     /gene="dhaM"
                     /locus_tag="IBJ56_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HAM3418112.1"
                     /translation="MISIVLVSHSQKITEGLQEMIVEMVGDTVHIISSGGTGDGRLGT
                     NAIMIADNIATCTNSEHIYIFCDIGSAILSAETALELLETDLLEKTTIIDAPLVEGAF
                     TAAVQSLVNPSKEAILQELTNVH"
     gene            509..940
                     /locus_tag="IBJ56_001862"
     CDS             509..940
                     /locus_tag="IBJ56_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418113.1"
                     /translation="MKFFRGMIGFCIAGMIVMSVWTPLAENYGIFGGYLAAFIIIGPM
                     WFMNHYVGLIENDEDAAFVDMAVGIGICGIMRDVFMQGGGELVSSLPTIGLVAIGAVL
                     AGIVAAAIEKDMAKKQEAKQEKTEPGMNMKEEERLNENQLV"
     gene            956..1297
                     /locus_tag="IBJ56_001863"
     CDS             956..1297
                     /locus_tag="IBJ56_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418114.1"
                     /translation="MSIGIALATIAGGFLFPFAIRMMWGKMVDEWGAIGGWMAAAFIV
                     GTVWTINHGIPKSMIYQSGTVWVDMAVAAGIGVFTASLLTGGKFSKSVVNLAAAVVGG
                     VVGGFLLSLFL"
     gene            1319..2314
                     /locus_tag="IBJ56_001864"
     CDS             1319..2314
                     /locus_tag="IBJ56_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HAM3418115.1"
                     /translation="MRRLVNDGYEAVEEMLAGYVAAQGKYVDFAENDKRVIVSKQMSE
                     EPRVRIIVGGGSGHEPLFLGYVGKDFADAAVVGNINTSPSPEPCYNAVKAVDSGKGCL
                     YMYGNYAGDVMNFDMGAEMAADDGIRVETVLVTDDIYSAENVEDRRGVAGDLIVFKAA
                     ASAAAKGLDLDAVKQAAEKANANTFSMGVALSSSTLPVTGKAIFEMKEGEMEVGMGIH
                     GEPGIKRTSIEPADKVVDQIMGYLIEEMKLTADEEVHVLINGLGGLPVMDQYICYRRV
                     DEILKEKGVHIHNPLVGNYATSMDMIGMSITLVRLDDELKDLLDTPCDTPYFKVD"
     gene            2336..2986
                     /gene="dhaL"
                     /locus_tag="IBJ56_001865"
     CDS             2336..2986
                     /gene="dhaL"
                     /locus_tag="IBJ56_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HAM3418116.1"
                     /translation="MSELVMDSAFFGHVLQDMGALIEKERDYLTGLDSDIGDGDHGIN
                     LSIGFREVNKQLDELLTASPDIATLLKKSGMILLGKVGGASGPLYGSFFMKCGADVPG
                     KTEVNFDELCGMIINGAAAVQHRGKAELGDKTMMDAFLPGVEVLQNRDTNAAPIETFS
                     AFVDAMHAGAQSTIPLIAKKGRALRLGERAIGHLDPGSESSWMLMNVILENLKKAV"
     gene            2990..3754
                     /locus_tag="IBJ56_001866"
     CDS             2990..3754
                     /locus_tag="IBJ56_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triosephosphate isomerase"
                     /protein_id="HAM3418117.1"
                     /translation="MRKPLVGINMKNYINTRAQTSEWLEATIPLLKNFSDVDTFIFPS
                     MGTLETTANLLAGTLFGFGPQNMAPEKSGPLTGEFSVESIIDLNANYVEIGHAERKNL
                     FHEKTSEIAKKIKLALDEKITPVVCVGEEVRANDTNELKNALKKQIEALFQTINLAQW
                     ENVVLAYEPEWAIGKASSAETNYIESAHQALREIIRELGGDETLVRIIYGGSVSKENA
                     AEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG"
     gene            3761..4207
                     /gene="rpiB"
                     /locus_tag="IBJ56_001867"
     CDS             3761..4207
                     /gene="rpiB"
                     /locus_tag="IBJ56_001867"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HAM3418118.1"
                     /translation="MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFENEKVLYPS
                     IAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIRAAQIHDSYSAERARKSNDAH
                     IMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR"
     gene            4232..4996
                     /locus_tag="IBJ56_001868"
     CDS             4232..4996
                     /locus_tag="IBJ56_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-threitol dehydrogenase"
                     /protein_id="HAM3418119.1"
                     /translation="MTFKGFDKDFNITDKVAVVTGAASGIGKAMAELFSEKGAYVVLL
                     DIKEDVKDVAAKINPSRTLALQVDITKKENIEKVVAEIKKVYPKIDILANSAGVALLE
                     KAEDLPEEYWDKTMELNLKGSFLMAQIIGREMIATGGGKIVNMASQASVIALDKHVAY
                     CASKAAIVSMTQVLAMEWAPYNINVNAISPTVILTELGKKAWAGQVGEDMKKLIPAGR
                     FGYPEEVAACALFLVSDAASLITGENLIIDGGYTIK"
     gene            5043..5699
                     /gene="fsa"
                     /locus_tag="IBJ56_001869"
     CDS             5043..5699
                     /gene="fsa"
                     /locus_tag="IBJ56_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HAM3418120.1"
                     /translation="MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIK
                     EICSIVDGPVSAEVIGLEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGI
                     KTNVTLIFTVSQGLMAAKAGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEI
                     ISASIRHIGHLEQAAEAGAHIATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQKEGN
                     "
     gene            5701..7698
                     /gene="tkt"
                     /locus_tag="IBJ56_001870"
     CDS             5701..7698
                     /gene="tkt"
                     /locus_tag="IBJ56_001870"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAM3418121.1"
                     /translation="MSRIDEQMVNSIRVLSMDMIEKANSGHPGLPMGAAPMAFSLWKN
                     HLKFNPEHPTWFNRDRFVLSAGHGSAMLYSLLHLFGYDLPMSELKNFRQTGSKTPGHP
                     EFGHTVGVDATTGPLGQGFAMGVGMAMAEAHLGAKFNQPEFPVVDHNTYVLCGDGCLM
                     EGISYEAASLAGHLKLGKLVVLYDSNDISLDGDLNESFSEDIELRFRAAGWQTLRVDD
                     GNDLDALDAAIHLAKTEKSRPTLIEVKTVIGYGSPGKAGKSAAHGSPLGEKELKLAKE
                     AYDWQMPPFELPKTVENQKEFYHSKGRASESSWLRTFNAYKQKYPALAESLQQLMDDN
                     LDADWDAELPVFDENADKAVATREVSGIVLQELEKKLPNLFGGAADLASSNKTHLKAS
                     ERFAPGNYAAKNISFGVREFAMGAAVNGMTLHGGVQAFGATFFVFSDYLRSAIRSAAL
                     MGIPSTFIMTHDSIAVGEDGPTHEPIEHLASFRAMPGLHVIRPADGNETVEAYRYAFT
                     QKEQPTMLVLSRQNLPILPNSAAKAQTGLAKGAYILADSPLDKLDIILLASGSEVHLM
                     TAVRDNLAKKGFGARVVSMPSFDLFDKQSPEYKESVLPKAVKNRFAAEMGASYGWHKY
                     LGDTGQILAIDSFGMSGPGDELARRFGFTVENLTELALKQL"
     gene            complement(7818..8006)
                     /locus_tag="IBJ56_001871"
     CDS             complement(7818..8006)
                     /locus_tag="IBJ56_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418122.1"
                     /translation="MEERFEKIYTQGKLNIMEIWVDKETGVQYVYHLSGYAGGMSPLL
                     DADGKPLLADLSKLNGAE"
     gene            complement(8050..8421)
                     /locus_tag="IBJ56_001872"
     CDS             complement(8050..8421)
                     /locus_tag="IBJ56_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic pyrophosphatase"
                     /protein_id="HAM3418123.1"
                     /translation="MVSRKQLIHKTQLSKTKKQTLKVTIDRPIGYVDKFGNVYPLNYG
                     FVEGVVGGDGEEQDVYVLSREISEPIDTFQGDLIAVITRNDDVEDKWVVAAPNEDFTI
                     EEIREKVHFIEQYFDSEIKLI"
     gene            complement(8920..9537)
                     /locus_tag="IBJ56_001873"
     CDS             complement(8920..9537)
                     /locus_tag="IBJ56_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418124.1"
                     /translation="MLMSLSVLPLATYASETENTPTESYDGENFIATQTGNTLVIEDK
                     KTGETVKIEMNDEENGVITSDDGTIENVHRDEEGNVYVDNELELEAPPLDIEDGINIA
                     TQPRLLKASKWIYVQTTKYNTTTQGNMRSLALGILSFMPITGPIFGIVAIIDAARSMG
                     AKTLYVRVKQYRTSGYQFYKYDSYYYANASLTKLVKKTSQTKRMW"
BASE COUNT         2985 a         1897 c         2064 g         2758 t
ORIGIN      
        1 tataaatagc aattaaacac aattaaaaac agaaaggagc aaccaaatga taagtattgt
       61 tttagtatct cacagtcaaa aaatcacaga aggcctccaa gaaatgattg ttgaaatggt
      121 tggagataca gtacatatta tttcctctgg cggaactggc gacgggcgtc ttggcacaaa
      181 tgcaatcatg atagctgata acatcgcgac ttgcactaat tctgaacata tttatatttt
      241 ttgcgatatt ggaagcgcta tcttaagtgc cgaaacagca ctcgaattat tagaaactga
      301 cctccttgaa aaaacaacca tcatcgatgc cccacttgtt gaaggcgcat ttactgccgc
      361 tgttcaatct ctcgttaatc catccaaaga agctatccta caagaactca caaacgtgca
      421 ttaaaaacgt aataaaacgc aattttgtaa ctgggaacta tgtaaattaa tttttacatg
      481 acaatactat tttcgaaagg agtttattat gaaattcttt agaggaatga ttggtttttg
      541 tatcgcaggt atgattgtta tgagtgtttg gactccactt gccgagaatt atggtatttt
      601 tggaggttat ctggcagctt tcattattat tggtccaatg tggtttatga atcactatgt
      661 tggtttaatc gaaaatgatg aagacgcagc gtttgttgat atggctgtcg gaattgggat
      721 ttgcggaatt atgcgtgatg tctttatgca aggtggtggc gagttagtaa gttcgcttcc
      781 aacgattggt cttgttgcga ttggagcagt tctagctgga atcgtggccg cagcaattga
      841 aaaagatatg gcaaaaaaac aagaagcaaa acaagaaaaa acagaacctg gcatgaatat
      901 gaaagaagaa gagcgtttaa acgaaaatca attagtctaa aaaggagtgt aaataatgag
      961 cattggtatt gcattagcaa cgattgcagg tggcttttta ttcccttttg ctattcgaat
     1021 gatgtgggga aaaatggttg atgaatgggg cgctatcgga ggttggatgg cagcagcatt
     1081 tatcgttggt acagtttgga caattaatca tggtattcca aaatcaatga tctatcaatc
     1141 tggaacagtt tgggtagata tggcggttgc agctggtatt ggtgtattca cagcttccct
     1201 tttaacaggc ggtaaatttt ctaaatcggt agtcaatttg gcagcagctg tagttggtgg
     1261 cgtggttggc ggatttttac tatcactatt cttataaaaa tatgaaggag gaagaaaaat
     1321 gagacgttta gtgaatgatg ggtatgaagc agtagaagaa atgttagctg gttatgttgc
     1381 ggcacaaggg aaatacgtag attttgcaga aaatgataag cgagtaatcg taagcaaaca
     1441 aatgagcgaa gaacctcgtg tgcggattat tgttggtggc ggttctggtc atgaaccact
     1501 tttccttggt tatgttggga aagatttcgc ggatgcggcg gtagttggga acattaatac
     1561 ttccccttct ccagaacctt gttataacgc agtaaaagcc gttgatagcg gtaaaggttg
     1621 tctatatatg tacggaaatt atgctggcga tgtgatgaac tttgatatgg gcgctgaaat
     1681 ggctgcggac gacggtattc gcgttgaaac agtgcttgta acagatgata tttactctgc
     1741 tgaaaatgta gaagatcgtc gtggtgtggc tggtgactta attgtattta aagcagcggc
     1801 atctgcagca gcaaaaggac ttgacctaga tgcggtgaaa caagctgctg aaaaagctaa
     1861 tgcaaatacg ttctcgatgg gtgttgcgct ttcttcttct acccttcctg taactggtaa
     1921 agctattttc gaaatgaaag aaggcgaaat ggaagttggt atgggaatcc acggtgaacc
     1981 aggaatcaaa cgcacttcca tcgaaccagc tgataaagtg gttgatcaaa ttatgggcta
     2041 tcttatagaa gaaatgaaat taactgcgga tgaagaagtg catgtactta ttaatggact
     2101 tggcggttta ccagtgatgg atcaatatat ttgttatcgc cgcgtcgatg aaattttgaa
     2161 agaaaaaggc gtgcatattc ataacccact tgttgggaac tacgcgactt cgatggatat
     2221 gattggtatg tcgattacac tggttcgttt agacgatgaa ctgaaagatc ttttagatac
     2281 accgtgcgac acaccatatt tcaaagtgga ctaaattact actggaggaa taaaaatgag
     2341 cgaattagtt atggatagcg cttttttcgg ccacgtttta caggacatgg gagcgctaat
     2401 tgaaaaagaa cgtgattact taaccggact ggactcggat attggagacg gcgaccacgg
     2461 aatcaatctc agcattggct tccgtgaagt gaataaacaa ttagacgaat tactcactgc
     2521 ttctcccgat attgcaacgt tgcttaaaaa atccggaatg attctccttg gaaaagttgg
     2581 tggcgcatct ggcccgcttt atggcagttt ctttatgaaa tgtggcgctg atgttcctgg
     2641 gaaaacggag gttaacttcg acgagctttg cggcatgatt ataaatgggg ccgctgcggt
     2701 tcaacatcgc ggaaaagccg aacttggtga taaaacgatg atggacgcct tcttgcctgg
     2761 cgtggaagtg cttcaaaatc gagatacaaa tgcagctcca atcgaaactt tttccgcatt
     2821 tgtagatgct atgcatgctg gcgctcagtc cactatccca cttattgcta agaaaggtcg
     2881 cgcactaaga cttggcgaac gagcaattgg tcaccttgat cctggctctg aatcgtcttg
     2941 gatgttaatg aatgtcattt tagaaaattt aaaaaaggcg gtctgattta tgcgtaaacc
     3001 cttagttgga attaatatga aaaactatat taacactcgg gctcagacat ctgaatggtt
     3061 agaagcgaca atccctcttc ttaaaaattt ttctgatgtg gatacgttta tctttccttc
     3121 tatgggcaca ctcgaaacga ccgccaacct tttagcgggg acattatttg gctttggtcc
     3181 acaaaatatg gcgccggaga aatccggccc gctaactggt gaattttcgg tggaatctat
     3241 cattgactta aacgcgaact atgtcgaaat tggtcacgca gaacgcaaaa acctttttca
     3301 tgagaaaact agtgagatag cgaagaagat taaacttgca ttggacgaaa aaatcactcc
     3361 ggttgtctgt gtgggtgaag aagtccgtgc gaatgataca aatgaattaa aaaatgcgct
     3421 aaaaaaacaa atcgaagcgc tgtttcagac aattaattta gcacagtggg aaaatgttgt
     3481 tctggcttat gaaccggagt gggcaattgg aaaggcgtct tcagctgaga caaactacat
     3541 cgaaagcgcg catcaagcgc tgcgtgaaat tattcgcgaa ctaggcggcg atgaaacgct
     3601 cgtaagaatt atttacggtg gctcggtcag caaagaaaac gccgcagaaa ttgtccgtca
     3661 aaaaaatgtc gatggtttat tcgtcggaag atttggccat aaaccgcaaa attttgccga
     3721 cattgtttct attgttagca aaacgaaagg atgagttagt atgaaaatcg caattggttg
     3781 tgacgaaatg ggttacgaac taaaacaaac cctcatcaca cgtttaaagg agaaaaatat
     3841 tgagtttact gatttcggca gttttgaaaa cgaaaaagta ctttatccaa gtattgccga
     3901 aaaagtagca ctagaagtta aaaacaacga ttatgaccga gggatcctca tttgcggtac
     3961 aggtattgga atggccatta cagcaaacaa aattcacggc attcgcgcag cacaaattca
     4021 tgattcttat tcagcagaac gcgcaagaaa aagtaacgac gcacatatta tgaccatggg
     4081 agctctagta atcgggccat cccttgccgt atctctactt gatacatggc tggatagcga
     4141 cttttcgggc ggacgctccc aagcaaaagt agatttaatg gaagaaatcg accaaaaaaa
     4201 tagataaaaa atttattgga ggtaatgaaa aatgactttt aaaggttttg ataaagattt
     4261 taacattaca gacaaagtag ccgtggtaac tggggcagca agcgggattg gtaaagcaat
     4321 ggcagaactt ttttccgaaa aaggagctta tgttgtcttg cttgatatta aagaagatgt
     4381 aaaagatgtc gcagcaaaaa tcaatccatc aagaacgcta gcacttcaag tcgatattac
     4441 gaagaaagaa aacatcgaaa aagtcgttgc cgaaatcaaa aaagtctatc caaaaatcga
     4501 tattttagcc aattcagctg gtgtcgcact tctcgaaaaa gcagaagatt taccagaaga
     4561 gtactgggat aaaacaatgg aactgaactt aaaaggttcg ttcctaatgg cgcaaattat
     4621 cggtcgcgaa atgattgcaa ctggcggcgg taaaatcgtt aatatggcct ctcaagcttc
     4681 tgttattgca cttgataaac acgttgccta ctgcgctagt aaagcagcga ttgtttctat
     4741 gacgcaagtg ctagcaatgg aatgggcgcc ttacaacatt aatgtcaatg cgatttcccc
     4801 aaccgttatc ttgacggaac ttggcaaaaa agcttgggca ggtcaagtcg gcgaagacat
     4861 gaaaaaatta attccagccg gtagatttgg ttatccagaa gaagttgccg catgcgccct
     4921 ctttttagta agtgacgcag cgagccttat tactggggaa aacctaatta tcgacggtgg
     4981 ttatacgatt aaataaagta ttcagcttta aagttcagct gagagaatgg agcgagtaaa
     5041 taatgaaatt tttcttggac acagcaagcg tatcggaaat aaaacgaatt agcgaacttg
     5101 gtttagtgga cggtgtgaca accaatccaa ccatcatcgc aaaagaaggg cgaccatttg
     5161 aagaagtaat caaagaaatt tgttctatcg tagacggtcc agttagcgca gaagttatcg
     5221 gcctcgaagc agacaaaatg gtagaagaag ctcgaattct agcaaaatgg gcgccaaatg
     5281 tagtagtaaa aattcctatg acggaagaag gtttaaaagc agtccatacc ctcacagctg
     5341 aaggcattaa aacaaatgtt acgcttattt tcactgtttc ccaaggatta atggctgcaa
     5401 aagctggcgc gacttatatt agcccgttct taggaagact agatgatatt ggtacagacg
     5461 gaatgatttt aattaaaaac ttgaaaaaag tgcttgataa ttatggtcta aaagcagaaa
     5521 tcatttcagc aagtatccgc catatcgggc atttagaaca agccgctgaa gccggagcac
     5581 atatcgcgac tatcccagga agccttttcc cgaaactttg gtctcatcct ttgactgata
     5641 aaggtattga aggattttta aaagattggg aagcgttcag tcagaaagaa ggcaattaat
     5701 atgagcagaa ttgatgaaca aatggttaac tcgattcgcg tattatcaat ggatatgatt
     5761 gaaaaagcga actccggaca tcccggtttg ccgatgggag ccgcaccaat ggctttctcg
     5821 ctttggaaaa atcatttaaa attcaatcca gaacacccaa cttggtttaa ccgcgatcgc
     5881 ttcgttttgt cagctggtca cggttcggca atgctttata gtttgctaca tttatttggt
     5941 tatgatttac caatgagcga gctgaaaaac ttccgccaaa ctggtagtaa aacgcccggt
     6001 catcctgaat tcggtcatac ggttggtgtc gatgcaacta ccggtccact tggtcaaggt
     6061 ttcgcaatgg gagttgggat ggcgatggcc gaggctcacc ttggcgccaa atttaaccaa
     6121 cctgaattcc cggttgttga ccataatacc tacgtgctat gcggagacgg ctgtttgatg
     6181 gaaggcattt cctacgaagc cgcatccctt gctggtcatt taaaactggg aaaattagtt
     6241 gttttatatg attcgaatga tatctcactg gatggcgatt taaacgagtc tttttcagaa
     6301 gacatcgaac tcagattccg agcagccggt tggcaaacgc tacgtgtgga cgacggaaat
     6361 gacttagatg cgcttgatgc agcaatccat ctcgcaaaaa ccgagaaatc ccgccctact
     6421 ttaatcgaag tgaaaacggt catcggttac ggtagccctg gtaaagccgg aaaatcggcg
     6481 gcacacggct ccccacttgg cgaaaaagaa ctcaaacttg caaaagaagc ttacgattgg
     6541 caaatgccac cttttgaatt accaaaaact gtcgaaaatc agaaagaatt ttatcattct
     6601 aaaggtcgcg cgagtgaaag cagctggctc cggacattca atgcttacaa acaaaaatat
     6661 ccagcactcg cagaaagttt gcaacaatta atggatgata atttggatgc ggattgggat
     6721 gcagaacttc ctgtcttcga tgaaaatgcg gataaagccg ttgcaacccg tgaagtatca
     6781 ggaattgttc tacaagaatt ggagaaaaaa ctgcctaacc tatttggtgg cgcggccgat
     6841 ttggcctcct ccaataaaac ccatttaaaa gctagcgaac ggtttgctcc aggtaactat
     6901 gccgccaaaa atatctcatt cggcgtccgc gagttcgcaa tgggagcagc agtcaacgga
     6961 atgacgcttc acggcggtgt tcaagctttc ggcgcaacct tcttcgtatt ctcggattat
     7021 ctacgttccg cgattcgttc agcagcttta atgggcattc catccacttt catcatgacc
     7081 catgattcca tcgcagtcgg tgaagacggt ccaacgcacg aaccaatcga gcatctcgca
     7141 tccttccgcg ccatgccggg acttcacgtc atccgaccag ctgacggcaa cgaaaccgtc
     7201 gaagcatacc gctatgcctt tactcaaaaa gaacaaccaa ccatgctcgt tcttagccgc
     7261 caaaacctgc caattttacc aaatagtgca gcaaaagcgc aaaccggact tgcaaaaggt
     7321 gcttacatct tagccgattc cccgcttgat aaactagata ttatcttact cgcttctgga
     7381 tccgaagtac acctaatgac agctgtcaga gataatctcg ctaaaaaagg cttcggagca
     7441 cgcgtagtca gcatgccaag ctttgattta ttcgacaaac aaagccctga atataaagag
     7501 tccgttttac caaaagcagt gaaaaatcgc ttcgccgcag aaatgggcgc atcatacggc
     7561 tggcacaaat acctcggcga cacaggccaa atcctcgcga ttgattcgtt tggtatgtct
     7621 ggcccgggag atgagctagc aagacgattt ggctttactg tagagaactt gacggagctt
     7681 gcgttgaagc agttgtaggt atggaataaa ctttttaaca gtaaccaatc aagtactcgg
     7741 gcataaaaaa gcaggcattc tctatttaga aagaagagaa tgcctgtatt tatttgacta
     7801 gaaatcaatt tcccacttta ctcagcgcca ttaagcttag ataaatcagc aagtagcggt
     7861 ttcccatctg catccaaaag tggtgacatt ccacccgcat aaccagacaa atggtaaaca
     7921 tattgcacac cggtttcttt atcaacccaa atttccataa tgttgagttt tccttgggta
     7981 taaatttttt caaatctttc ttccattgtt ttccgcctcc tgttttaagg ttgcacgctt
     8041 tattccaccc taaatcaatt taatttccga atcaaaatat tgctcaataa aatgtacttt
     8101 ctctctaatt tcctctatgg tgaaatcctc attcggggct gcgaccaccc atttatcttc
     8161 cacgtcatca tttcgggtaa tcaccgcaat taaatctcct tgaaacgtat caattggctc
     8221 agagatctct ctcgataaaa catacacatc ctgttcttcc ccgtcaccac caacgacacc
     8281 ttccacaaac ccataattca gcggatagac attgccgaat ttgtcgacat aacctatagg
     8341 gcgatctatg gttactttta gagtctgttt ttttgtttta gaaagttgag ttttatggat
     8401 taattgttta cgtgaaacca tatgattttc tcctttctaa gttttttatt tcaaaatttg
     8461 aatgaagtct ctttttatat gccttctttc ccctgctcca aacgattttg caaaacttta
     8521 tctagcctac gctcgaaaag aagatgctat ataatcagtt atatttacat tcaatttctt
     8581 ctgttattgg gattggtata actcaactct tcaaagctat cctgttttaa ttataattca
     8641 agctaaagct tctaaagaac gagtcacttc ttctctaatt tgcttttcac tgtagtaaac
     8701 attaggtaat ttcaaatctt attcactatc agagaatcta gctgccatat cagacacatt
     8761 ccctaaaatt gtgtattctt ccatagaaga aactcgtcta aaatacggaa taacatttcc
     8821 ataaaacaga aaaagagaag actttttctt ccccagtcta agaccttgct aatctttgag
     8881 caaggtcttt tagtttatac tagttttttt aataatgccc taccacattc gtttagtctg
     8941 ggatgttttt ttaactagct tagttaaact agcattggca taataataag aatcatactt
     9001 ataaaattga taaccactag tacgatattg tttcactcta acatataatg ttttcgcccc
     9061 cattgatcga gcagcatcaa taattgcaac tattccaaag attggacctg taattggcat
     9121 gaatgataga atccccaatg caagacttct catattgcct tgtgtggttg tattatactt
     9181 agttgtttga acatatatcc atttagaagc tttcagtaac cgaggctgag tggcgatatt
     9241 tatgccatct tcaatgtcta aaggaggtgc ttctagttca agctcattat ctacataaac
     9301 gttaccttct tcatccctat gtacattttc tattgtacca tcatcagatg taattacccc
     9361 gttttcttcg tcattcattt caatttttac agtttcgccc gtcttcttat cttcaataac
     9421 taaagtatta cctgtttggg ttgctataaa attttctccg tcatatgatt cagtaggagt
     9481 gttctctgtt tctgatgcat aagttgccag tggcagaacc gaaagagaca ttaacataac
     9541 tgatgctagt actataatga ttttttcatg gttatctcgc tcccttatta tgttttttta
     9601 gacagatact tattatacaa aaaccaattg aataatgtac ctaacaacaa aagtatccct
     9661 gcaacccata taaagctttg attcatatag acatatgaaa cata
//
LOCUS       DABQVC010000110         9519 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.110,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000110 DABQVC010000000
VERSION     DABQVC010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9519
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.110"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            36..605
                     /locus_tag="IBJ56_001874"
     CDS             36..605
                     /locus_tag="IBJ56_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HAM3418125.1"
                     /translation="MIEQDLQKRLVDQEILQGSDLLDEIHEVKQNNEQLIIELNTKYH
                     SKKEVIKYLSDITGKPVDPSVDVSLPFYSDFGKHITFGKNIFINLNVTFVDLGGITIE
                     DNVLIGPGARLVTVNHLVSPKKRRGLRVAPICVKKNAWIGANATILSGVTIGENAIVA
                     ADATVTRDVPANVIVAGSPAKQIRKIIEE"
     gene            619..1365
                     /locus_tag="IBJ56_001875"
     CDS             619..1365
                     /locus_tag="IBJ56_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3418126.1"
                     /translation="MTIKNKVIIITGASSGIGEATALLLAEKGAKVVLAARRVEKLEK
                     IVQTIKASSGEAIFAKTDVTKREDNKKLVELAIETYGKVDAIFLNAGIMPNSPLSALK
                     EDEWEQMVDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWA
                     VRDLMEVLRMESAQEGTNIRTATIYPAAINTELLETITDKETEQGMTSLYKQYGITPD
                     RIASIVAYAIDQPEDVNVNEFTVGPTSQPW"
     gene            1561..1986
                     /locus_tag="IBJ56_001876"
     CDS             1561..1986
                     /locus_tag="IBJ56_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418127.1"
                     /translation="MGYIRVIFDSFIILEKYHTRVGFDGFALVANEAIFKVQQDTQYL
                     KPYQNLNRPQEQIPELSEEGDTLLNFLEWTKKNNKLVEIMTVWDELIIGTIETIEANL
                     VMINTLAPEEFASDGKCFIECDNIVDICIDTARLKFITA"
     gene            2242..8829
                     /locus_tag="IBJ56_001877"
     CDS             2242..8829
                     /locus_tag="IBJ56_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014654186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNRLRE domain-containing protein"
                     /protein_id="HAM3418128.1"
                     /translation="MKIHAKAKKILVSLIAIMLFLSLIPGYAPMAEETSTGVEVPEKK
                     AGEQAPTEVKEERTENEVVFNNHDGSFTKQIFADSINMEVDGEMKRIDANVEKEADSD
                     MIVPKQTPLELGFLDKMEDGAYQKLTKAGAEVTFRLKGARTGENEQAVTDQPATYKEN
                     EVTYENVFPKTDLRHLTFPQSVKEDIVLHEPNQVDTYVYQIETKLGLELAKNGDVLFK
                     NKSGETMYTLPKPVMTDSNVGAETGEAALSENVSFEVKQLTKTVYELQLKVDTAWLND
                     VAREYPVYIDPSVRLDEVYNANINSAKPTETNIGSKLWDSGQNAYTLKLGKWDNSTGN
                     NAAYLKMDTSTLNKATISKATLKVYNIWHMSPTVKNDLWYYESNANWSPWQVTWNTAP
                     ATTRIGSVNVGRGEWANLDVTKTVQAWASGVRPNNGFRLATNIDQNYWKKLVASENNK
                     NYPYLEVNYTYAQPEKPTVKTNSNGVGTGTGYMDLSWKAVPGATSYNIVISNGYNYEY
                     INTKSTATTWSTKGKKISPTNDEIANGEFEFHHDGKGTEFALDPRAQYENAFQAGSTF
                     GLRNLTRYLFRVQAVFPGGESPNSDLVFAYMPIEKPQPPAAKAYSNLAHKETGYVELN
                     WEKSPMADGYKVLVFNGKAYEEYDVGAETKWTTQNKGIWPTKEEIAEGKFALHHDGKG
                     DELAKDPSPVYTNSGGNYKERTNYWFRIVAYQKAGNNATSIQSEPATPSLPEVVNKQL
                     GMVDYWTSVPVRGGEVNATNGNFLFHETDFNLEGRGPSINVDRTFNSQDDATGIFGKG
                     WTSTLEEKLIEEENGNIVWVESDKKVHRFTKKGDKYVAPPGIYSEITKNADGYLKIEE
                     DKSETRFLADGRLKSEKDTKGNELTYEYTDGKLTNMRDASGRTVTLAYEGELVKELVG
                     PEDRKISYTYNDKQELISSSTARGKIYCYGYTDGLLTSIYDPKHTEEKPYETTFAYEE
                     EKLTEITDPVGKKTTLSYDMEEQQTTLTNEKKKKTIYSYNDAGNPKKEIVDADGLKLT
                     TTYTYESNNLVKEVNPKGQEETYSYDADGNITQATDAYGTESYTYNGNNDVTSATDTE
                     GRKTTVTYDGADAVSETLATESQVSSVTQYDAYGNPIRGSGELSSAGNLLQNSGFEKG
                     AGVSNWTLIQSDAKGSMTFDSTQSAPGTLGGSGSVKLTSEANSTVKGYSSVTQRVDVE
                     PETTYTFSAWIKTSGMTNADALLIGRLQDANAKDITDAGVWQSNRATSIKKNGDWVKR
                     QLTFKTSKNTRQVLLYLDNEQPAPHKGKGTIWYDNVQFEKGSVASSYNPVVNSSFEEH
                     NGTLPTGWMRTGNTALTQAKVVDNESHSGDSAVYFERKATSEAYTHIVQDVPVNQKEA
                     KALTISALSKSEDAKANGSVATMSNDYSIWGTIYYQDGTTSSVQGQFPLGTNDWNRSA
                     VVVKPTKPVKMIKVYTMFRNGLTGKAWFDDVRVIEGEVLTKNEYDASGNYVTASYDEE
                     GRKISFTYDIYGNTTSETDEKGNKKTLTYDADNALIDTKLANGTSVAYKYDDNGNTTE
                     KNVTASGKTQKNIYEYDVDNKITAFTDALNRTIKYEYDAAGNETKAIMPNGRVTESTY
                     DSADRLDGIKWNDKLAFKFQYDPNGNQTKVTDEINSIVTDKTYDDANRITKVAERGGD
                     VSYTYKDKPTKDNKGKTDKVGEVAINHGDYTAKTSYTYNDLDRNTRVNDGSKNAYFEF
                     DEFGNINVYTAGNGTAANYTYDSTQKVTNAAISSASGTQILDENYTYDAASNRTSIDN
                     KQDGKTTYEYDAVNQLTKETLPDGTVKAYTYDGFGNRTQVAISGSETKTIAASYNDGN
                     QLVSWNGEALTYDANGNRTSDGKYTYTWDTGDRLSSITKKGESKPFTSYTYDDDNRRL
                     SKTVDGVTTNYHYDGDSIDVLYETDGDGKVVRQYVYSDDNVRLAMKMNGKTLYYHYNA
                     HGDVIALTDEAGKIVAEYAYDAWGNVLKNTASTEEAKANPYGYAGYTYDKEIEQYYLM
                     ARYYEPEQGVFTAYDPDPGDEDDPQTMNGYNYANNNPVMMVDPDGNWAWLIPAAMAAG
                     KFIYKFRKPIAKYGKKGAKWVGKTAKKGAKWVGKTAKKGAKWARSRYNSKKKEFTVTK
                     NWKVGLPKKSQGGRIFAIINRKKGRLFALDYGKVGGNQKKYLHVHWNYKPKHYIIYPR
                     KGRGK"
     gene            8829..9311
                     /locus_tag="IBJ56_001878"
     CDS             8829..9311
                     /locus_tag="IBJ56_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418129.1"
                     /translation="MLDKQQLYIVENKDIPNYEVDSGITGAEQNYIYNFKNPIPISEQ
                     ELQDICDTFGEFMVSAYFLVDIFGPYEELPGDKKNGYKKVVLADESMEIKKKMFHLFL
                     EGDAYPDANKIFLFKEKKELNARKNMEIEDGMIVISPVLDVTAIGIFSKGIDLAQFFK
                     "
BASE COUNT         3508 a         1792 c         1995 g         2224 t
ORIGIN      
        1 attaaatagt aaaaggtttt cgagggggaa agcgcatgat agaacaagat ttacagaaaa
       61 gactagtcga ccaagaaatt ctccaagggt cggatttgtt agatgaaatt cacgaagtaa
      121 aacaaaacaa tgaacaactt atcatcgaac taaacaccaa gtaccactca aaaaaagaag
      181 tgattaaata tctcagtgac atcactggaa aaccagtcga tccatcagtc gatgtctcac
      241 ttccttttta tagcgacttc gggaaacata ttacttttgg gaaaaatatc tttatcaatt
      301 taaatgtaac tttcgtggat ttgggtggga ttacaattga agataatgtt ttaattggcc
      361 caggagcaag acttgtgacc gtcaaccatt tagttagccc gaaaaaaaga cgtggcttaa
      421 gagtagcccc aatttgtgtg aagaaaaacg cctggattgg cgcaaacgca acgatattat
      481 caggcgtaac aatcggcgaa aatgctatcg ttgctgcgga tgctaccgtc acaagagatg
      541 tcccagcaaa cgttatcgtc gccggaagcc cagccaaaca aattcgtaaa attatcgagg
      601 aataaggaga gatagcaaat gacaatcaaa aataaagtaa ttattataac cggagcatca
      661 tccggaattg gtgaagcaac agccttactt ttagctgaaa aaggggcgaa agtggttctt
      721 gctgctcgtc gcgtagaaaa gctggaaaaa attgttcaaa cgattaaagc gagttcaggc
      781 gaagcaattt ttgccaaaac ggatgtgaca aaacgcgaag acaataagaa attagtagaa
      841 ttagcgattg aaacatacgg aaaagtagat gcaatctttt taaatgcggg aatcatgccg
      901 aattcgccat tatctgcttt aaaagaagac gaatgggagc aaatggttga tatcaatatt
      961 aaaggcgtac tgaatggaat tgccgcagtt ttgccttctt tcatcgctca aaaatcagga
     1021 catatcatcg ccacttcttc tgtagcagga ttaaaagcat atcccggcgg cgcagtatat
     1081 ggcgcgacta aatgggcagt ccgtgactta atggaagtat tacggatgga gtcagcgcaa
     1141 gaaggaacca atatccgcac agcgaccatt tatccagcag ctatcaatac ggaattacta
     1201 gaaacaatca cggataaaga aaccgaacaa ggaatgacga gcttatacaa acaatacggc
     1261 atcacacctg atcgtatcgc gagcattgtt gcgtatgcta tcgatcaacc cgaagacgtc
     1321 aacgtaaatg aattcacagt aggtccaacc agccaaccgt ggtaaatgga aaagccttga
     1381 acggattgat tattcgttca aggctttttt tgtattgcag gagaggatta aacatggtat
     1441 cttaaattga aagcgcttaa aaaagaggtg aaccaatgaa atcgtaaaca attagaacaa
     1501 ctaaaccaaa agtgccttta tgaagtatat gatgatgagc aacaaacaaa tgattttcgt
     1561 gtgggatata tcagagttat ttttgattcg ttcattatat tggaaaaata ccatactaga
     1621 gtgggatttg atggttttgc actcgtagca aatgaagcta tttttaaagt tcaacaagat
     1681 actcaatatc tgaagccgta tcaaaattta aaccgacctc aggaacaaat acctgaatta
     1741 agtgaggaag gcgacacact attgaatttt ctggaatgga cgaaaaagaa caacaaatta
     1801 gtggaaataa tgactgtttg ggacgagcta attatcggga caatagaaac gattgaagca
     1861 aatttagtaa tgattaatac ccttgcacca gaagaatttg catctgatgg gaaatgcttt
     1921 atagaatgcg acaatattgt tgatatttgt attgatacag cgcgactgaa atttattact
     1981 gcttaactat ttaacactaa ttataattaa taaaattaat aattcaaaca aaaagtaaaa
     2041 attttacatt ttgcataact ttttggaatg aaaacatgct ataataattt tgtaatatta
     2101 ggaaaaggac cagttttatc tcaattaaaa ctggtccttt tttagaaaga gagggcagtg
     2161 aagttgttag cggcaagtta aaaaaagaga aattagcaag gcatcgaatg aaattacatt
     2221 gaaaaaggga gagcttgaca catgaaaata catgcaaaag caaaaaaaat cttagtgagc
     2281 ctgatagcta ttatgttatt cctttcacta atacctggtt atgcaccaat ggcggaggag
     2341 acgtcaactg gggtagaagt accagaaaag aaagcgggag aacaagcacc aacagaagtg
     2401 aaagaagaaa gaacagaaaa tgaagtggtt tttaataacc acgacgggag ctttacaaaa
     2461 caaatctttg cggattctat caatatggaa gttgatggcg agatgaaacg catcgatgcg
     2521 aatgtggaga aagaagcaga ttctgacatg attgttccaa aacaaactcc attagaacta
     2581 ggcttcttag acaaaatgga agacggcgca tatcagaaac taacaaaagc tggcgcagaa
     2641 gttacttttc gcttaaaagg agcacgtaca ggcgaaaatg aacaagcagt tacagaccaa
     2701 ccagcgacct acaaagaaaa tgaagttact tatgaaaatg tatttcctaa aacagattta
     2761 cgtcatttaa cttttccaca atcagtaaaa gaagacatcg tactacatga acctaatcaa
     2821 gtagatacgt atgtttatca aatagaaaca aaacttggtt tagagctggc aaagaatggt
     2881 gatgtgctat tcaaaaataa atccggtgaa acaatgtata cgcttccgaa accagttatg
     2941 acagattcca atgtcggcgc tgagaccggg gaagcagcgt tatccgagaa tgtttccttt
     3001 gaagtgaaac aactcaccaa aacagtctat gagttacaat taaaagtaga tacagcatgg
     3061 ctaaatgatg tcgcgcgcga atatcctgtc tatattgatc catctgtccg gttagatgaa
     3121 gtgtataatg ccaacatcaa ttcagcaaaa ccaaccgaaa ccaatatcgg aagcaaactt
     3181 tgggattctg gccaaaatgc ttacacgtta aaacttggta aatgggacaa ttcaacagga
     3241 aataatgccg cctatttaaa aatggacacg tctactttaa ataaagcgac gatttctaaa
     3301 gcaacgctaa aagtgtataa catttggcat atgtccccaa cagttaaaaa tgatctttgg
     3361 tactatgaat ctaatgcgaa ctggtcccca tggcaagtga catggaatac agctcctgca
     3421 acgacacgga ttggaagcgt caatgtcggc cgaggtgagt gggcgaattt agatgtcact
     3481 aaaacagttc aagcatgggc aagtggcgtg cgaccaaata acggtttccg tctagctacg
     3541 aacatcgatc aaaactattg gaaaaaatta gtagcaagtg aaaataataa aaactatcct
     3601 tatctagaag taaattatac gtatgctcaa ccggaaaaac ctactgttaa aacgaattca
     3661 aatggagtag gaactggaac aggttacatg gatttatctt ggaaggctgt tcctggtgca
     3721 acgagttata atatcgttat ttctaatgga tataactacg aatatattaa tacaaaaagc
     3781 accgcaacca cttggagcac taaagggaag aaaatttccc caacaaatga cgaaatcgct
     3841 aatggagaat tcgaattcca ccatgatggc aaaggaaccg aattcgctct tgatccgcga
     3901 gcgcaatatg aaaatgcgtt tcaagctgga agtacttttg gactgcgcaa tttaacgcgc
     3961 tatttattca gagtgcaagc cgttttcccg ggtggagaaa gcccgaattc cgacttagta
     4021 tttgcctata tgccaatcga aaaaccacaa ccccctgctg cgaaagcata ttctaactta
     4081 gctcataaag aaacaggata cgtggaactt aactgggaaa agagcccaat ggcggatggc
     4141 tataaagtac ttgtcttcaa tgggaaagcc tacgaagaat acgatgttgg cgcagaaaca
     4201 aagtggacca cccaaaataa agggatttgg ccaaccaaag aagaaattgc agaaggtaaa
     4261 ttcgctcttc atcatgacgg aaaaggcgat gaactagcaa aagatccttc tccagtttat
     4321 accaattctg gcggtaatta taaagaacga acaaactact ggttccgaat tgttgcgtac
     4381 caaaaagcgg gaaataacgc cacaagtatt caatccgaac cagcgacacc atcccttcca
     4441 gaagtagtaa ataaacagct aggaatggta gattactgga caagtgtgcc ggtacgtggc
     4501 ggcgaagtaa acgctacaaa tggaaacttt ttattccatg aaacagattt taacttagaa
     4561 ggccgcggcc cgagtatcaa tgtcgaccgt acttttaaca gccaagatga cgcaacaggc
     4621 atttttggta aaggctggac aagtacgctt gaagagaaac ttattgaaga agaaaacgga
     4681 aatatcgtat gggtggaatc ggacaagaaa gtccatcgtt tcactaaaaa aggcgataaa
     4741 tacgtggcac caccaggcat ttactccgag attactaaaa acgcagatgg ctatttgaaa
     4801 atagaagaag ataagtcaga aacgcgcttt ttagctgatg gacgattaaa atccgaaaaa
     4861 gatacaaaag gcaacgaatt aacttacgaa tatactgacg gcaaactaac aaacatgcgc
     4921 gacgcttccg gacgtaccgt gactttagcg tatgaaggcg agctcgtaaa agaacttgtc
     4981 ggaccagaag accgtaaaat cagctacacg tataatgaca aacaagagct aatcagttca
     5041 tccactgccc gcggtaaaat atactgctat ggctacacag atggcttatt aacatcgatt
     5101 tacgatccaa aacatacaga agaaaaacca tacgaaacaa cctttgctta tgaagaagag
     5161 aaattaacag aaataaccga tccggtcggc aaaaaaacaa cactttctta tgacatggaa
     5221 gagcaacaaa caactttaac aaacgagaaa aagaagaaaa ccatttattc ctacaatgat
     5281 gctggaaatc caaagaaaga aattgtggat gcagatggtc tcaaactcac aacgacctac
     5341 acgtatgaat caaataacct agtaaaagaa gtgaatccta agggacaaga agaaacatat
     5401 tcttacgatg cagatggtaa tatcacgcaa gcgacagatg cttacggtac agaatcatat
     5461 acctacaatg gaaataacga tgtaacgagc gcaactgaca cagaaggacg caaaacgacg
     5521 gttacttatg acggagcaga tgcggtgtca gaaacacttg cgacagaatc ccaagtatcc
     5581 tctgtaacgc agtatgacgc ctatggaaat ccaattcgag gtagtggtga actttcttca
     5641 gcaggtaact tacttcaaaa cagcggcttt gaaaaaggag caggagtttc caactggaca
     5701 ctgattcaat ctgatgcaaa aggaagcatg acattcgata gcactcagtc agctccagga
     5761 acactcggcg gcagcggttc cgttaaacta acgagtgaag caaattctac cgtaaaaggc
     5821 tattcatccg ttactcaacg cgttgatgta gaaccagaaa caacgtatac atttagcgcc
     5881 tggattaaaa catccggaat gacaaacgcc gatgcacttc tcattggacg tttacaagat
     5941 gcaaatgcaa aagatattac cgatgccggc gtatggcaat ccaaccgcgc cacatcgatc
     6001 aaaaagaacg gtgactgggt aaaacgccaa ctaactttta aaacatctaa aaacacacgc
     6061 caagtcttgc tttatttgga caatgaacaa ccagctccgc ataaaggaaa aggcacaatt
     6121 tggtacgaca atgttcagtt tgaaaaaggt agtgttgctt ccagttacaa cccggtagtc
     6181 aacagcagtt ttgaagagca caatggaaca cttccgactg gctggatgcg cacaggtaat
     6241 accgcgctga cacaagcaaa agtagtcgat aatgaaagcc atagcggtga tagcgctgtt
     6301 tacttcgagc gaaaagcaac aagtgaagcc tacacgcata ttgtccaaga tgtaccagta
     6361 aatcaaaaag aagccaaagc attaacaatt tccgcactat ccaaatcaga agacgccaaa
     6421 gcaaacggtt ctgttgcaac gatgtcgaac gattattcga tatggggaac aatatattat
     6481 caagatggca caacttcttc cgtacaaggt caattcccac tcggaacgaa cgactggaac
     6541 cgaagtgccg tagttgttaa accgactaag ccagtcaaaa tgattaaagt ttacaccatg
     6601 ttccgcaatg gtttaaccgg aaaagcttgg tttgacgatg tacgtgtcat agaaggcgaa
     6661 gtattaacaa aaaatgaata cgacgcttcc ggcaattatg taacagctag ctatgacgaa
     6721 gaaggccgca aaatcagctt cacttacgat atttacggta acactacatc cgaaacagac
     6781 gaaaaaggca acaaaaaaac tttaacctat gatgcagaca acgcacttat agacacaaaa
     6841 ctagcgaacg gcacatccgt agcctataag tacgacgaca atggcaacac caccgaaaaa
     6901 aatgtcaccg catctggcaa aacgcaaaaa aatatctatg aatatgacgt agataacaaa
     6961 attaccgcat ttaccgatgc acttaatcgc acaatcaagt atgaatacga tgcagccggt
     7021 aatgaaacaa aagcaatcat gccaaatggt cgcgtaaccg aaagcacata cgattccgct
     7081 gaccgcttgg acgggattaa atggaatgat aaactagcat ttaaattcca atacgatcca
     7141 aacggcaacc aaacaaaagt aaccgacgaa attaacagca tcgttaccga caaaacctac
     7201 gacgatgcca accgaatcac caaagtagcc gaacgaggtg gtgacgtaag ctacacttac
     7261 aaagataaac caacaaaaga caacaaagga aaaacagaca aagtcggaga agtagccatt
     7321 aaccacggcg actacacagc aaaaacaagc tacacataca acgacttaga ccggaatacc
     7381 cgcgtaaacg acggaagcaa aaacgcctat ttcgagtttg acgaatttgg aaacattaac
     7441 gtctacacag caggaaacgg caccgcagcc aactacacct acgatagcac ccaaaaagtc
     7501 accaacgcag ctattagtag cgcaagcggc acccaaattt tagacgaaaa ctacacctat
     7561 gatgcagcaa gcaaccgtac aagcatcgac aacaaacaag acggaaaaac aacctacgaa
     7621 tacgatgcag tcaatcaact aaccaaagaa acactaccag acggcaccgt aaaagcatac
     7681 acctacgatg gcttcggaaa ccgcacacaa gtagcaatca gcggaagcga gacaaaaaca
     7741 attgccgcaa gttataatga tggtaatcaa ctggtttcgt ggaacggaga agcgctgacg
     7801 tatgacgcca atggtaaccg tacaagcgat ggcaagtaca cgtatacatg ggataccggc
     7861 gaccgtttaa gcagcattac gaaaaaaggc gagagcaagc cgtttacgag ttatacgtac
     7921 gatgatgata accgccgctt gtcgaaaaca gtcgatggcg tgacgacgaa ttatcattat
     7981 gatggcgata gtattgatgt tctgtatgag actgatggtg atggaaaagt agttcgtcag
     8041 tatgtttatt cggatgataa tgttcgttta gcgatgaaga tgaacggcaa aaccctctat
     8101 tatcactata atgcgcatgg cgacgtaatt gcgctcacag atgaagcagg taagattgtc
     8161 gcagaatatg cgtatgatgc ttggggaaat gtgctgaaaa acactgcctc tacagaagaa
     8221 gccaaagcca atccgtatgg ttatgcagga tacacatatg acaaggaaat cgaacaatat
     8281 tacttgatgg cgcgttatta cgaaccagag caaggcgtgt ttaccgcata tgatccagac
     8341 ccgggcgatg aagacgaccc gcagacgatg aatgggtata attatgcgaa taataatccg
     8401 gtgatgatgg ttgaccctga tggaaattgg gcatggctta tcccagctgc tatggctgcc
     8461 ggtaagttta tttataagtt tagaaagcct attgcaaaat atggtaaaaa aggtgccaaa
     8521 tgggtaggga agactgctaa aaagggcgct aaatgggtag ggaagactgc taaaaaaggt
     8581 gctaagtggg cgcgatcgag atataattct aagaaaaaag aatttacagt tactaagaat
     8641 tggaaggtag ggcttcctaa gaaaagccaa ggaggaagga tttttgctat aattaaccgt
     8701 aaaaaaggga ggctattcgc tttagattac ggaaaagttg gtggaaatca aaaaaaatat
     8761 ttacatgtcc actggaacta caaaccaaag cactatataa tctatccaag aaaaggaagg
     8821 ggaaaataat gcttgacaaa caacaactat atattgtaga aaacaaagac atacctaatt
     8881 atgaagttga ctctggaatt actggagcag aacaaaatta tatttataat tttaaaaatc
     8941 caatccctat ttctgaacaa gaattacaag acatttgtga tacttttggt gagtttatgg
     9001 tttctgctta ttttttagtg gatatatttg ggccgtatga ggaattacct ggagacaaaa
     9061 agaatggcta taaaaaagtt gttcttgcag atgaatctat ggagataaag aaaaagatgt
     9121 ttcatttgtt tttagaaggt gatgcttatc cagacgcaaa caaaatattt ttgttcaagg
     9181 agaaaaaaga attaaatgct agaaaaaaca tggaaataga agatggaatg atagtgattt
     9241 ctcctgtttt agatgttact gctataggca tattttcaaa aggaatagat ttggcgcagt
     9301 ttttcaagta atcagagtgg atggtatgac tgcgagaata ttgcctaaaa cattaaagat
     9361 gctttgaata aagctcaatt gctaaaataa tatatctaaa ttagaaatat aagttactgg
     9421 aatattattt ctatagttta atcgtgtaga aacaatttga aattgctgct gattatgtat
     9481 accaaagtaa agagataatc tttattgaca tcataggcg
//
LOCUS       DABQVC010000111         9474 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.111,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000111 DABQVC010000000
VERSION     DABQVC010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9474
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.111"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            31..792
                     /locus_tag="IBJ56_001879"
     CDS             31..792
                     /locus_tag="IBJ56_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAM3418130.1"
                     /translation="MNQKERIVEELKLLENKKTISQEELMQIFSISKDTARRDILKLV
                     ESGLAERYPGGVSLPVLKPQIESYTSRLVKQSEQKKKIAYAAGKVIKDHMTIYLDVST
                     TVHFLASNLEQHDLVVVTNSMDNAIAASQKEANKVYLLGGFFNFHSRVLSGEPVLGQL
                     QQFNFDVAFIGGAGLTEDGIFYSELTDVYMKQEIIRNSEKVFLLIDSTKVNKKTASKI
                     DFSGIDAVITDQPLPKDLMQCLISKEVEVISLKGL"
     gene            798..1931
                     /gene="nagA"
                     /locus_tag="IBJ56_001880"
     CDS             798..1931
                     /gene="nagA"
                     /locus_tag="IBJ56_001880"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HAM3418131.1"
                     /translation="MAVIKNVKIYKENELIDAAVITEGNLIKEVCSTTPEKYSDEPTF
                     DGNGQLLIPGMIDVHIHGANNYDMMDGSTESIQAVSMACAETGCTSFLVTSVSSSFED
                     LIQMIKQTKKVIGKEKGAKIAGIHLEGPYLNIEKKGMQNPAYLRHPDLKEMKKIFDEA
                     DGLIKMVTIAPELPRGIELIDFLKKRGVVVAIAHSNATYEEAQNAFEQGATHITHCFN
                     AMPAIHHRAPGLVTAALENDSVSVQTIVDGVHLHPGIVRLIHKIKGPDKMVLTTDALQ
                     AMGVGDGEYIFGGHQVTVKEGIARLKDGTLASSTVTMNKSLKLSNEFGIHLQDAIQMA
                     ASTPADILGMNNFGRIEKGYVADLVLLDKNFEVLTTWIDGEIY"
     gene            1973..2782
                     /locus_tag="IBJ56_001881"
     CDS             1973..2782
                     /locus_tag="IBJ56_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3418132.1"
                     /translation="MPLFKHEGTYFNYEIQGEGIPFLFLHGLGDNLKFAYETFDKDEK
                     IQLISLDQRGHGKSGNDSRKLSYDRLAKDALALMDYLGIQHFFVGGLSMGAGVAVNLA
                     VQAADKVLGLIILRSSATDEPMKKEVIAWFSTVSKYLPKKDGALLLEQDPIFPSIKET
                     YPKAIDTFKRYFEDDAAVTHYKKFSDIPKDRPIKNKSELTNLTIPTLILANNYDVIHP
                     IEYSLFYKRNIENASYYELTPKTIDAEKHKLEITTYINTFIINTSKKTNYK"
     gene            complement(2888..3844)
                     /gene="manA"
                     /locus_tag="IBJ56_001882"
     CDS             complement(2888..3844)
                     /gene="manA"
                     /locus_tag="IBJ56_001882"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HAM3418133.1"
                     /translation="MTEALFLNPVFQDRIWGGTKLHDYFGYDIPSDTTGEDWAISAHP
                     NGPSVIKNGEYKGKTLAELWQENPALFGNPKEAVFPLLTKILDANTDLSVQVHPNDEY
                     AKVHENGELGKTECWYIIDCAPGAELIYGHKAASKEEFATWAKNGEWDKLLRKVAIKP
                     GEFYYVPSGTIHALGTGTLVLETQQSSDTTYRVYDYDRKDAEGNLRELHLDKAIDVTT
                     APHVDAKLDIKTETRGGLTETTFVSNDFFSVYKWEVDGAAEFMAKAPYTLVSVLDGEA
                     VLTIDGTKQSIKKGDHFVLPNDVKSWEIDGKMTAIVSNPPVK"
     gene            complement(3924..4655)
                     /locus_tag="IBJ56_001883"
     CDS             complement(3924..4655)
                     /locus_tag="IBJ56_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HAM3418134.1"
                     /translation="MNDVLTLLRNHRSFRKYKKGVEIPEENLDAIIRAAQAAPSWING
                     QHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRVKVASDMHGKSFQIAG
                     EEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAEFLNLPEFVMPVVG
                     LCIGVPDVEAPVKPRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSEREGFVSYTERL
                     AKFYDRPYYPNLTEQIKERGFLGGK"
     gene            4778..5008
                     /locus_tag="IBJ56_001884"
     CDS             4778..5008
                     /locus_tag="IBJ56_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3418135.1"
                     /translation="MRQQQIDFKWLEENFLTANEAATYLGISKQALLSLAKRDVLPFT
                     KKGNMVLFHRMDIELRLENQQSLREKYRPFET"
     gene            5092..5847
                     /locus_tag="IBJ56_001885"
     CDS             5092..5847
                     /locus_tag="IBJ56_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-dependent peroxidase"
                     /protein_id="HAM3418136.1"
                     /translation="MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFL
                     SDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTY
                     SYISVVELSNYLASHMAGGEDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWY
                     MLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTE
                     MRFDEASARYAEFGSFFIGNLLPSEQLSKLFTI"
     gene            6043..6810
                     /locus_tag="IBJ56_001886"
     CDS             6043..6810
                     /locus_tag="IBJ56_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418137.1"
                     /translation="METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSG
                     AGKSTLLNVLSTIDKPTSGQIVISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLT
                     IRENIILPLALAKRPVKEMEEKLAIISEKFGITEILDKYPSEISGGQKQRTAASRAII
                     TAPSLIFADEPTGALDSKSATNLLESLRDLNEQDKSTIMMVTHDAFAASFCKRILFIK
                     DGELYTEIYRGTKTRKEFFQKILDVLAKLGGDSDDVI"
     gene            6797..8737
                     /locus_tag="IBJ56_001887"
     CDS             6797..8737
                     /locus_tag="IBJ56_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418138.1"
                     /translation="MTLFDLAKKNIRHNFVHYFLYFASMIFSIMIYFTFLVLSKDPSV
                     VARIDQSAKLSTAFSSSSVILLIFVAIFILYSNNFFTRKRKKEIGLYSLLGLRKKEIG
                     RMLFYENFIMGLGALIIGIIAGTLLSKLFVTILLNLINLDSIGGFAFSWAAVIQTSIV
                     FIIITLFTSFTGYRIIYRTTLLDLFHSESKREKSPKPSFILALLSILLIGLGYFIAGQ
                     PLDSKGSIWAQLGFSIGALVILASVIIGTALFITFFLPYLLTKLRNNKRIFYKGSNII
                     STSQLAFRISSNAKTLIIISILSATTLSAIGTISSVYYQANTSASTSAPSSFEYEIPK
                     DSETNNKIIKTAESDPDHPVEFKQKSTYYIVKAEGARPDFVEYDINEGFPVISESDYN
                     SLVKKQGTPEKTANLKENEAQMVLTITYDEDAQKEMIGEKFTLNSPDKPNIKIKSVVQ
                     NSPISSIPGLLVLPDSQVAKIAADSSIAAHGVESISVKDAKQAQALDKKMRAVIPKDT
                     NFVSYTKMYQEIITVTGVLLFIGMFIGFVFLAATGSIIYFKQLTEAYNDIGTFDILKK
                     IGLTRRDIRKVLAKQLLVVFLIPLIIGIAHSSFALLGLSHMLALDLTLPVVISTGVYT
                     LMYIVYYFVTLNSYTNIVFGKK"
     gene            complement(8775..>9474)
                     /locus_tag="IBJ56_001888"
     CDS             complement(8775..>9474)
                     /locus_tag="IBJ56_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418139.1"
                     /translation="WNYWMLLFFGVGLFIIGFVFMRKESFRLASIIGVICFVLFQGFS
                     VYYYQLRILSKLEYAQPFEWSGTLLCILGLLVLIALLIGPKFQAKEIQADQAWKTKWR
                     YAAGVFSLLGAVTSVFAAVTIFRQLHSDNIKEGYLFTTVLDGYFACFMAVIFLLVVIF
                     SWRKVSYLLVGILMGAAFILLTNYLSVTNWIDFAKENLSITFGSNEREVFGMQFLMGA
                     SAFLSSIFGYIAKK"
BASE COUNT         3148 a         1769 c         1683 g         2874 t
ORIGIN      
        1 taagataaat tatctaaggt ggcgaaaatg atgaaccaaa aagaacgaat agtggaggaa
       61 ctgaagctgc tagagaacaa gaaaactatc tctcaggaag aactcatgca gattttttcc
      121 atttcaaaag atacagcaag gcgcgatatt ttaaaattag tcgaaagcgg actcgcagaa
      181 cgctatccag gtggcgtgtc actaccagtt ttaaaacctc aaatagaaag ctatacaagt
      241 agattagtaa aacaaagtga acagaaaaag aaaattgctt atgcagcagg taaagtgata
      301 aaagatcata tgacaatcta tttagatgtt tcgaccactg ttcatttttt ggcttcaaac
      361 cttgagcaac atgatttagt agtagtaacg aattcgatgg ataatgccat agctgcatct
      421 cagaaagaag cgaacaaagt atatttgctc ggtggttttt tcaacttcca ttcgcgtgta
      481 ttatccggtg agcccgtttt aggtcaactt cagcaattta acttcgatgt tgcttttatt
      541 ggcggggctg gactaacgga agatggcatc ttttattcag aacttacaga tgtttacatg
      601 aaacaagaga ttatcaggaa ttccgaaaaa gtatttttac taattgatag tacaaaagta
      661 aataaaaaga cagcttccaa aattgatttt tctggaattg atgccgtaat aacagatcag
      721 cctttaccaa aagatttaat gcagtgcctt atttctaaag aagtagaagt tatatctttg
      781 aaaggattgt gaaaataatg gccgttatca aaaatgtgaa aatttacaaa gaaaatgaat
      841 taattgatgc agcagttatt acagaaggaa atttgataaa agaagtttgc tcaactactc
      901 ctgaaaagta ttcagatgag ccaacttttg atggaaatgg acagttgcta attcccggaa
      961 tgatcgacgt tcatattcat ggggcaaata attatgatat gatggatggc tcaacagaaa
     1021 gcatccaagc tgtttcgatg gcttgtgcgg aaaccggatg tactagtttc ttagtcacct
     1081 cggttagttc ttcttttgaa gacttgatcc aaatgattaa gcaaactaaa aaagtcattg
     1141 gaaaagagaa aggtgccaaa attgcaggaa ttcatttaga aggcccctac cttaatatag
     1201 aaaaaaaagg aatgcaaaat ccagcctatt taagacaccc cgatttaaaa gaaatgaaaa
     1261 agatcttcga tgaagcagat ggtctgataa aaatggtcac aattgctcca gaattgccta
     1321 ggggtatcga actcattgac ttcttgaaaa aaagaggagt tgtggtcgcc attgcacatt
     1381 ccaatgcaac ttatgaagag gcgcaaaatg ctttcgaaca aggagcaacc cacatcacac
     1441 attgcttcaa tgctatgcca gccattcatc accgggcacc aggacttgtt acagcagcct
     1501 tggaaaatga ttcggtaagc gttcaaacca ttgtagacgg tgtccatctc catcccggaa
     1561 tcgtgcgcct tattcacaaa attaaaggac cagataaaat ggttctcaca accgatgccc
     1621 ttcaagcaat gggagttggc gacggggagt atatttttgg cggtcaccaa gtaacggtta
     1681 aggaaggcat agctcgttta aaagacggga cattagcttc aagtaccgtg acgatgaata
     1741 aatccttaaa gttaagtaat gaatttggga ttcacttaca agacgctatt caaatggcag
     1801 caagtacgcc ggcagacatt ttaggaatga acaattttgg tcgaatcgaa aaaggctatg
     1861 tcgctgattt agttttactt gataaaaatt ttgaagttct aactacatgg attgatggtg
     1921 aaatatatta aatcgactgg ataaatactt tcagaggagt ggattataaa atatgccatt
     1981 atttaaacac gagggaactt actttaacta tgaaatccaa ggtgaaggca taccattttt
     2041 atttcttcat ggattaggtg ataatttaaa atttgcttat gaaacatttg ataaagacga
     2101 gaaaatccaa ttaatttcat tggatcaaag aggccatgga aaaagcggaa acgattccag
     2161 aaaacttagc tacgacaggt tggccaagga cgcattagcg ttaatggatt atttaggaat
     2221 acagcatttt tttgtcggag gattatctat gggggctggc gttgccgtga atttggccgt
     2281 ccaagcagcc gataaagtgc tgggccttat aatacttagg agttctgcaa cagatgaacc
     2341 gatgaaaaaa gaagtgatag catggtttag taccgtaagt aagtatttgc ctaaaaaaga
     2401 tggtgcccta ttattggagc aagatccgat ttttccatcg ataaaagaga cctatcctaa
     2461 agcaattgat acgtttaagc gctattttga agatgacgcc gctgttaccc actataaaaa
     2521 gtttagcgac atacctaaag atagaccaat aaaaaacaaa agtgagttga ctaatttaac
     2581 aatccctact cttatactcg caaataacta tgatgtaatt catccaatcg aatacagttt
     2641 gttttataaa cgtaatattg aaaatgcaag ttattatgaa ctaacaccta aaaccattga
     2701 tgcagaaaaa cataaactgg aaataacgac ttatataaat acatttatca ttaatacatc
     2761 aaaaaaaaca aattataagt aatccaaaat gatattttag ttgtcatttc ataaagcaat
     2821 aaagaagcag aaatcttgta tattccattt tcaaaatggc ttttatacaa tgatttctgc
     2881 ttatttgtta tttcacaggc ggattcgaaa caatcgccgt catttttcca tcaatttccc
     2941 aagattttac atcattcggc aatacaaaat gatcgccttt tttaatcgat tgttttgttc
     3001 catcaatcgt aagtaccgct tctccgtcta aaacactcac taacgtataa ggagctttag
     3061 ccatgaattc agccgcgccg tccacttccc atttgtatac gctaaagaaa tcattcgata
     3121 caaaagtagt ttcagtcaac ccaccacgtg tttctgtttt aatatctaac ttcgcatcca
     3181 catgcggtgc agtcgtaacg tcaatagctt tatccaaatg aagttcgcgc aagtttcctt
     3241 ctgcgtcttt acggtcatag tcatatacac gataagtagt atcagagctt tgttgtgttt
     3301 caagcactaa cgtccccgtg cctaacgcat gaattgtacc acttggaaca taataaaatt
     3361 cacctggttt aatcgccact ttacgaagca atttatccca ttcgccgttt tttgcccaag
     3421 tagcgaattc ttctttgcta gctgctttgt gtccatatat taattccgca ccaggagcgc
     3481 agtcaataat ataccagcat tctgttttgc caagttcccc gttttcatgc actttcgcat
     3541 attcgtcatt tggatgaact tgtacagaaa ggtccgtatt cgcatccaga attttcgtta
     3601 atagtgggaa aacggcttct ttcggattac caaaaagtgc aggattttct tgccataatt
     3661 cagctaatgt tttgccttta tattcgccgt ttttgattac cgaaggaccg ttcggatgag
     3721 cggaaatcgc ccagtcttct ccagtagtat cagacgggat atcgtaacca aaataatcat
     3781 gtaatttcgt tccaccccaa attcggtctt gaaaaacagg gtttaaaaat aatgcttctg
     3841 tcattataaa attacctcca ttccagcgtt tttgctgggt tttgtcaatt aaaagtatat
     3901 actaataatg gcgaagatgc tagttatttc ccgcctaaaa agcctctttc ttttatttgt
     3961 tctgttaaat ttggataata aggtctgtca taaaatttgg ctaaccgttc ggtataagaa
     4021 acaaagcctt ctcgctctga aaacggaata atctcttggt catatgcttc tagtaaaggc
     4081 atgacatcag tttggtacgt ctcttcaaaa taaactgctt ctttcggcaa acgtggtttt
     4141 acaggtgctt cgacatctgg aacgccaata caaagtccga caacgggcat gacgaattct
     4201 ggtaaattta ggaattcagc ggttgccgtg atatttcgtc gcaaaccacc aatacaaatc
     4261 gtcccgtaat caagcgactc agcagctgtt aaagcatttt gcatacaaag tccgatgtct
     4321 gttgccgcaa ccattagtaa atcttcttcc ccggcaattt ggaaactttt gccgtgcatg
     4381 tcactcgcta cttttacgcg gtgaaaatct gccacaaaac aaagaaaaac ggaacattct
     4441 gctatgtaag gttgatttcc gcaaagttcg gccattttat ttttacgttc ttgatcttta
     4501 atcgcaataa tcgaatagtg ttgaccatta atccacgacg gggctgcttg agctgctcgg
     4561 ataatcgcat ctagattttc ttccggaatc tcaacccctt ttttatattt acgaaaagag
     4621 cgatgatttc ttagcaaagt taatacgtca ttcatattta tgcctcctag atttatcatt
     4681 tagttaaagt atagcttgtt tttaggcaat tgttaatgtt ttctcttgta tttctgccag
     4741 atattttcta cacttaaaga aaaagaggtg aaaagatgtg cgccaacaac aaatagattt
     4801 taaatggctt gaagaaaact tcctgactgc gaatgaagcc gcgacttact taggcatatc
     4861 taagcaagca ctcctttcct tagccaaacg cgatgtactc ccctttacga aaaaaggaaa
     4921 tatggttctt ttccaccgaa tggacattga acttcggctt gaaaaccaac aaagcttacg
     4981 tgaaaaatac cgtccttttg aaacgtaaat ttcacaaaca gcgaaacgga cgaactactt
     5041 cccgtatgtt acactttagt tagtgatatt ctaaacaagg agtgatacat aatgaatgaa
     5101 gcagtaaaaa ctttagatgg atggttttgt ctacatgatt ttcgttcgat tgactgggct
     5161 gcgtggcgtg aactaaatcc aggtaatcag gaacttatgt taaatgaact cagccacttt
     5221 ttaagcgata tggaaattac taaaaatatc ggtgaaggtg aacataccat ttacagtatt
     5281 cttggtcaaa aagcagattt agtattcttc actttgcgtg attcccttga agcgctgaat
     5341 gaagtcgaaa atcgttttaa taaattagcg attgccgact acttgttgcc gacttattcc
     5401 tatatatctg tggtggaatt aagtaactat ctagcgtctc acatggcggg cggcgaagat
     5461 ccttaccaaa acaaaggtgt tcgcgcgaga ctctatccag cactcccacc taaaaagcat
     5521 atttgtttct acccaatgag taaaaaacgg gacggcgctg ataattggta tatgcttcca
     5581 atggaagaac gccaacaact tattcgcgac catggcttga ttggtagaag ctatgcgggc
     5641 aaagtacaac aaatcattgg tggctccatt ggatttgatg attatgaatg gggcgtcact
     5701 ttattttccg atgatgcact ggagttcaaa cgcatcgtaa cggaaatgcg ctttgatgaa
     5761 gcaagcgctc gatatgctga atttggttct ttctttattg gaaacctgtt accatccgag
     5821 caactttcta aattatttac tatttaatat aagtaaaaac tggaattcaa tctaacaaat
     5881 gactgatttt gttagctgga ttccagtttt tttatttcac taaactaaca attttgtaag
     5941 gatatctacc gtaaatgtca tttgatacga tggaacgagt cctatataca cgatagaatg
     6001 atacatatac taaccgaatc tagtttttaa ggagagaaaa taatggagac agttttacaa
     6061 gcaaaaaatg tgagaaaaat atacggtagc aaaggaaatg tctacactgc actagaaaat
     6121 atcagtattg atattaaaga aggtgaattt actggaatta tgggaccatc tggggctggt
     6181 aaatccacgt tactaaatgt cttatctact attgataaac cgacttctgg tcagattgtg
     6241 atttccggac aagaactcga aaacatgaat gaacaacaaa tgtccacttt ccgacgtgac
     6301 aaactaggtt ttatattcca agattacaac ttactagaca cattaactat ccgtgaaaat
     6361 attatccttc ccctcgcact agcgaaacgc ccagtaaaag aaatggaaga aaaattagca
     6421 attatcagtg aaaaattcgg cattacagaa atccttgata aatatccaag cgagatttca
     6481 ggtggtcaaa agcaacgtac tgcagcttca agagcaatta ttactgcacc aagtttaatt
     6541 tttgccgatg agccaaccgg tgcgcttgat tctaaatcag caaccaactt acttgaaagc
     6601 ttacgtgact taaatgaaca agataaatca acaatcatga tggtaacaca tgatgcgttt
     6661 gcagcaagtt tttgcaaacg aattttattt attaaagacg gagaattata cacagaaatc
     6721 tatcgtggaa ctaaaacacg taaggagttc ttccaaaaaa ttctagacgt ccttgcaaaa
     6781 ctggggggcg actcagatga cgttatttga tttagctaag aaaaatattc gacataattt
     6841 tgtccattac tttttatatt ttgcatcgat gattttcagc attatgattt attttacatt
     6901 ccttgttctt tcgaaagatc catctgttgt agctagaatt gaccaatcgg ctaaattatc
     6961 gacagcattt tcaagctcct cagtcattct acttattttt gtagcgattt ttatccttta
     7021 ttccaataat ttctttaccc gaaaaagaaa aaaagaaatt ggactttact ctttactcgg
     7081 ccttcgtaaa aaagaaattg gtcgcatgtt gttttatgaa aattttatta tgggacttgg
     7141 cgcattaatc atcggtatta ttgccggtac attactttcc aagctttttg taaccatttt
     7201 acttaactta attaatcttg atagtattgg tggttttgcc ttttcttggg cagcagtaat
     7261 acaaacgagt attgtcttta ttatcatcac gttatttaca tcatttactg gttaccgtat
     7321 tatttaccgc accactttac ttgatttgtt ccactcagaa tcaaaacgcg aaaaaagtcc
     7381 aaaaccttca ttcatcttag ccttactttc gattttatta attggtttag gctattttat
     7441 cgctggacaa ccacttgatt ctaaaggttc tatttgggca caacttggct tttctattgg
     7501 ggcattagtt attttagctt cggtaatcat tggtactgca cttttcatta cctttttctt
     7561 accgtattta cttacaaaac ttagaaataa caaacgtatt ttctataaag gtagtaacat
     7621 tatctcgacc tcgcaattag cctttagaat atcatccaat gcgaaaacct tgattattat
     7681 ttctatttta agtgcaacaa ccctttctgc tatagggaca ataagcagtg tgtattatca
     7741 agcaaatacg tccgcaagca cgtccgctcc atctagcttt gaatatgaaa tacctaaaga
     7801 tagtgaaaca aacaataaaa taattaaaac tgcggaaagt gaccctgatc atccagtaga
     7861 gtttaaacaa aaaagcactt actatatcgt taaagcagag ggagctcgtc cagactttgt
     7921 agaatatgat ataaatgagg gttttccagt tatttccgaa tctgattata attctctcgt
     7981 aaaaaaacaa ggaacacctg aaaaaacagc taatctcaaa gaaaacgaag cacaaatggt
     8041 actaactatt acttatgacg aagatgctca aaaagaaatg attggtgaga aattcacact
     8101 taattcgccg gataaaccaa atattaagat taaatctgtc gttcaaaact caccaataag
     8161 tagtattcca ggcttgctcg tacttccaga cagccaagta gctaagatag cagcagattc
     8221 ttcaattgct gctcacggtg tcgaatccat ttcagttaaa gatgcaaaac aagcacaagc
     8281 attagataag aagatgcgtg ctgttattcc aaaagatacg aatttcgttt cttatacgaa
     8341 gatgtaccaa gagattatta cagtcactgg tgttcttctc tttatcggaa tgttcatcgg
     8401 ttttgtgttc ttagcagcaa caggaagcat catctacttc aaacagctaa cagaagcgta
     8461 taacgatatt ggtacttttg atatcttgaa aaaaattggt cttacacgta gagacattcg
     8521 taaagtcctt gctaaacagt tactagttgt attcttaatt ccactaatca ttggtattgc
     8581 acatagtagt tttgcacttc tcggactttc acatatgtta gcacttgatt taactttgcc
     8641 agttgttatt tctactggag tttatacatt aatgtatatt gtttactatt ttgttacctt
     8701 aaatagctac acaaatatcg ttttcggcaa aaaataaaaa aagaagccct ctaatcttaa
     8761 ttagagggct tccattattt tttcgcaata taaccaaaga tactagatag aaaagcagaa
     8821 gctcccatga ggaactgcat accaaacact tctcgttcat tactaccaaa tgtaatagat
     8881 aaattttctt tggcaaaatc aatccaattt gtcacagata aataatttgt cagtaaaata
     8941 aaggctgcac ccattaaaat accaactaaa agatacgaaa ctttacgcca ggaaaagatt
     9001 accactagaa gaaatataac agccataaag catgcaaagt aaccatctaa taccgttgta
     9061 aataaataac cttctttaat attatccgaa tgtaattgtc taaaaatagt tactgcagca
     9121 aaaaccgatg tcactgctcc aaggagtgag aaaacacctg ctgcataacg ccatttcgtt
     9181 ttccaagctt gatctgcttg tatttctttt gcttgaaatt ttggtccaat aagtaatgcg
     9241 attaatacta aaagtcccaa aatacataat aaagttcccg accattcaaa tggctgtgca
     9301 tactctaatt ttgaaagaat tcggagctga taataataca ccgaaaaccc ttggaataaa
     9361 acgaaacaga taacgccaat aatacttgca aggcgaaaac tttcttttct cataaaaaca
     9421 aaaccaataa taaaaagtcc tacaccaaaa aataatagca tccaataatt ccat
//
LOCUS       DABQVC010000112         9114 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.112,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000112 DABQVC010000000
VERSION     DABQVC010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9114
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.112"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..2511
                     /locus_tag="IBJ56_001889"
     CDS             <1..2511
                     /locus_tag="IBJ56_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAM3418140.1"
                     /translation="FASYSFDGQMSVIERYLDIRPENKARVEKLIQDRRLFVGPWYTQ
                     TDSLLVKTEAVIRNLLYGYKMGEEFGHSMSIGYSPDIFGQHAYLPAIYKSFNMEHSIF
                     QRGVYNDQVQDDLNFHWTSPDNKSIPTNNIFFGYGPGKFLSSEKSYVETRLLPILDRL
                     AEMNTHTDVLLLPAGGDQVLVRENFPEIVAELNEMDLGYTFILSDYEAFMNDAWTSTF
                     PNEITGELLACQKSRIHHTCRSERYDIKRLNYLVENRLVNILEPLATMANKFGIKYPK
                     PWLDIIWKKLFDSHAHNGIGASNSDDANHDIVVRLTSALRMTDGLINLLKKQITKAVS
                     QEMGDENIALLFNTNPVAEERTAKLTLFTPEKSFQLFSGDAEVTFSVVHQEKLDGGRK
                     VIVTAKGEKEVAVPDYYRTEIYLKSGLIPALGYKTLQVKAVTTEMDQLISISKQTIEN
                     EKIIVQFENGKINLLNKEQQSIINDLIRFENVADAGDSFDFSPLEGDQAIYIETSELL
                     TVEKNHLYSKMMLKHTALVPKDLEARAQKTSTETFEILTEIELFDGEEFVRVRHTIDN
                     KVKDHRIRALIKTNVAEPKYSYADQGYSLMKRSVINPYLANWREDKFVEAPVPIFPVE
                     NIVAVSEEDATLALLVGGIKEYEILPKTAEIALTLFRSNGLLGKDDLMWRPGRASGIN
                     NKVVPTPDGQMLEEMIFEYAVYVQPEKLNEQTLYAQSNIFEGHTETYHLQNLNTFEER
                     LERFEVDYPIDRLPAQNSIFELDNPNVFMSTCKKSWDGTGTIIRLFNPSDKEETVRWT
                     TNASSFEVSLAEEKIAELKENTICIPKKGFATILLEGE"
     gene            2513..4195
                     /locus_tag="IBJ56_001890"
     CDS             2513..4195
                     /locus_tag="IBJ56_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HAM3418141.1"
                     /translation="MQTELVNQIEVKLRKIYQAAYQPAYLEKMLACAENYSNNARGSI
                     DTISEKNVYLIAYGDSIFEKNKHPLQTLNEFLQEYAQDVITDVHLLPIFPSTSDDGFS
                     VTDYKQIDEQLGDWDDVQKMSENFRVMLDFVANHMSKSSDWFKRFSDNEAPYNQFFIE
                     KDSQFDYKNVTRPRTSPLFHKYENGKELWTTFSEDQLDLNVRNIDCLVALTDVLLFYA
                     SKQATSIRLDAIGFLWKTSGTTCMHLPETHEIITLWRLLIDELYPNLQIITETNVPHE
                     ENISYFGDGENEANMVYQFPLPPLVLHTFTCHDTTKLSKWAKSISQVSSTATYFNFLA
                     SHDGIGMRPATGILSDEEINSLVQKAVQNGGQVSYKDNADGTQSVYELNINYGEALQN
                     PGEDTTEELVTKKIIAAHSILLTLQGVPAIYYHSLLGSKNDLVGYEESGINRRINREK
                     LEKNQLVHELETDTYRQTIFTSLKKLVQIRRNHTAFSPFATQEILDLGPDVFAIKRES
                     EEECIYGIINVTSHNIRKTLAFSGTNLLTNQPVTSELDLTAYEVVWIKKAVQ"
     gene            4192..5325
                     /locus_tag="IBJ56_001891"
     CDS             4192..5325
                     /locus_tag="IBJ56_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HAM3418142.1"
                     /translation="MKIVIAPDSFKESATAVEVANAIKKGWTKARPADQISLAPVSDG
                     GEGFLTVLSESSEVELFQAEVTNLNGHKITASYGILASQETAIIESANTIGLDLIPAV
                     DRNPAYASSKGVGELILAALNHNVKKIIIGLGGSGTNDGGAGLIQALGVALLDKNKQP
                     IPPGGIHLQELAYIDASNLNPKLKNIQFQIACDVTNPLLGENGATFVFGAQKGATPEM
                     LVQLERAMQNYGAKLDQFSSQKITTKKGAGAAGGIVAGLMTFLNADVLSGSALVMELS
                     NMKDKMKDADIVIVGEGRMDKQSMMGKIPVQIAQEAKKQGCFVLAIVGSLALENNIAQ
                     QHGIDAFFPNIPEITDLPTLFENTTKNLERTAENIAKLTLIGK"
     gene            complement(5330..6286)
                     /locus_tag="IBJ56_001892"
     CDS             complement(5330..6286)
                     /locus_tag="IBJ56_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAM3418143.1"
                     /translation="MPNIKEIAKLAGVSVTTVSRVLNNHPYVAEEKRARVQAVIDELD
                     YSPNRSAMDLARGKTNTVGVIIPYNDHPWFDKIVNGILEVAFKNRYSVTLFPTGYDPK
                     EEEKYLMRLKTKQVDGLIITSRANNWDVILPYLAYGPIIACEYVESKEVSCSYIDRVK
                     AYRAGFQFLEDEGYKKVAFTAGRASRESTSTYGKINAYEQVFGSVGDNRFLSECYTLE
                     DGLKAGEHFFAEGKDWPDAIYANGDEVAAGVMYHVKKLGLRVPEDVAILGQENLPIGK
                     VLEITTLDHNLKKLGENAFTIFEQGKLQRIKVEHELIRRKTV"
     gene            complement(6354..7688)
                     /locus_tag="IBJ56_001893"
     CDS             complement(6354..7688)
                     /locus_tag="IBJ56_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAM3418144.1"
                     /translation="MNPDPESQQIILQLILIVVLTMLNAFFASAEMALVSLNKNRVKS
                     QAETGDKKAVMLAKLVDDPSKFLATIQVGITLAGFFSSASAATSIATRLESVFGGSSF
                     AKELSIIVVTIVLSYITLVFGELYPKRLALQKSEKIARVSVRPIMAVGVVLRPFVKFL
                     SFSTDILVKLTRMEKNTDNEKMTREEMQLLIETGRRDGVIEVEELQMLRGVFEMDNKY
                     AREVMVPRTDAFMIDAETESEELCDALLSENFSRVPVFTGDQDSVLGILHMKDFFAEA
                     RKSGFENIDVKALVKDAYFAQETMFIDDLLKNMQRTRNQMAILMDEYGGVAGIVTVED
                     LLEEIVGEIDDENDVFSDEVKKIDETTFIVEGRMPLDDFNEMFHVELPSRGVDTVAGF
                     VLTLTGTIPEEDDKVVVEYGTLRFTVEEMNDARLVSVRVEKDIRTSELEQMA"
     gene            complement(7806..8495)
                     /locus_tag="IBJ56_001894"
     CDS             complement(7806..8495)
                     /locus_tag="IBJ56_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HAM3418145.1"
                     /translation="MNKLNEALKKAEHIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSP
                     EYMLSHTCLVREPEKFYQFVTENMYYPDAEPNAIHTKMAEIEAEKDVTIITQNIDGLH
                     EKAGSKKVVNFHGSLYHCYCQKCGMSVTAEEYLKSDIHSGCGGVIRPDVVLYEEAIPE
                     SAIDQSLAAIRQADLIVIVGTSFRVSPFCNLTDYRNKKARIFAVNKEQISLPYPFEMM
                     ESDAVKVFAEI"
     gene            complement(8488..8778)
                     /locus_tag="IBJ56_001895"
     CDS             complement(8488..8778)
                     /locus_tag="IBJ56_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mitomycin resistance protein mcrB"
                     /protein_id="HAM3418146.1"
                     /translation="MPTELIKLPGIGKKMVLMLNEIGVEEVADLKGKNPLELYEDTCD
                     KRGERMDPCVLYTYRCAVYVAETDEAEQDVDLRKWWNWKDKQHINERNLKNE"
     gene            complement(8768..>9114)
                     /gene="lde"
                     /locus_tag="IBJ56_001896"
     CDS             complement(8768..>9114)
                     /gene="lde"
                     /locus_tag="IBJ56_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Lde"
                     /protein_id="HAM3418147.1"
                     /translation="GSMLLQIPMAFAQNPLQLGILRFLLGLTDGALLPAVQSLLTKNT
                     PREVSGRIFGYNQSFQYIGNVIGPLVGSSVAAHFGYGDVFLVVAGFIFINVLISFYFN
                     RKMHGEKGNHAN"
BASE COUNT         2857 a         2077 c         1612 g         2568 t
ORIGIN      
        1 tttgcaagtt attcctttga tggtcaaatg tctgtcattg agcgttactt agatattcgt
       61 ccagaaaata aagcgcgcgt tgaaaaactt atccaagatc gtcgtctgtt cgtcggtccg
      121 tggtatacac aaaccgatag cttgttagtt aaaacagaag ctgtgattcg caacttactt
      181 tatggttata aaatgggcga agaattcggc catagcatga gtatcggtta ttccccagat
      241 atttttgggc aacatgctta tctgccagct atttataaat catttaatat ggagcatagc
      301 attttccagc gtggtgttta taacgatcaa gtgcaagatg accttaactt ccactggaca
      361 tctccagaca acaagtccat cccaaccaac aatattttct tcggttatgg acccggcaaa
      421 tttttaagca gtgaaaaaag ctatgtagaa actcgtcttc tgccaatttt agatcgactt
      481 gctgaaatga acacacatac agatgtcctt cttttaccag caggcggcga ccaagtactt
      541 gtgcgcgaaa acttcccaga aattgtcgcg gaattgaacg agatggactt aggttatacc
      601 ttcattctgt ccgattacga agcatttatg aatgatgctt ggacttctac tttcccgaac
      661 gaaatcactg gtgaactgct tgcttgccaa aaatcacgaa tccaccatac atgtcgttca
      721 gaacgctacg atattaaacg tcttaattac ttagtagaaa atagattagt caacattcta
      781 gaaccacttg caacaatggc caataaattc ggaatcaaat atcctaaacc ttggttagat
      841 attatttgga aaaaattatt tgatagccac gctcataacg gtattggtgc ttcgaattca
      901 gatgacgcaa accatgacat cgtagttcgg ctaactagcg cacttcggat gacagatggc
      961 ttaattaacc ttttgaaaaa acaaattacg aaggccgtta gtcaggaaat gggcgacgaa
     1021 aatattgcgc tattattcaa tactaaccca gtggcagaag aaagaactgc aaaactaaca
     1081 ttattcactc ctgaaaaatc attccaactg ttctcaggtg atgcggaagt gactttcagc
     1141 gttgtacatc aagaaaaatt agacggtgga cggaaagtaa tcgtaactgc aaaaggcgaa
     1201 aaagaagttg ctgttcctga ttattatcgt acagaaatct acttgaaaag cggcctaatc
     1261 cctgcacttg gttacaaaac attgcaagtg aaagccgtta ctacagaaat ggaccaatta
     1321 ataagcattt ccaaacaaac aattgaaaat gaaaaaatca ttgttcaatt cgaaaacggg
     1381 aaaatcaatc ttttaaataa agaacaacaa agcattataa atgaccttat tcgcttcgaa
     1441 aatgtggctg acgctgggga ttcctttgac ttctcaccac ttgaaggcga ccaagccatc
     1501 tatatcgaaa caagcgaatt actaaccgtt gaaaaaaatc atctatatag caaaatgatg
     1561 ttaaaacata ctgctttagt tccgaaagat ttagaagccc gcgcacaaaa aacaagtaca
     1621 gaaacatttg aaattttaac agaaatcgaa ctttttgacg gtgaagaatt cgtccgggtt
     1681 cgccatacta ttgacaataa agtaaaagac caccgcatta gagcattgat taaaacaaat
     1741 gtagcagaac ctaaatattc ttacgcagac caaggttata gcctcatgaa acgcagcgtc
     1801 ataaaccctt accttgcaaa ttggcgcgag gacaaattcg tggaagcacc tgtgccgatt
     1861 ttcccagtgg aaaatatcgt cgctgtttct gaagaagacg caacacttgc cttgttagtt
     1921 ggcggtatca aagaatatga aatcttaccg aaaactgctg aaatcgcatt aactcttttc
     1981 agaagtaatg gtttgcttgg aaaagatgat ctcatgtggc gtccaggtcg tgcttccggt
     2041 attaataaca aagtcgttcc tacaccagac ggtcaaatgc tcgaagaaat gatttttgaa
     2101 tatgctgtgt acgtacaacc tgagaaacta aatgaacaaa cgctctacgc gcaatctaac
     2161 atttttgaag gtcatacaga aacctatcac ttacaaaacc taaatacatt tgaagagcgc
     2221 ctagaacgtt ttgaagtaga ttatccaatc gaccgtttac cagctcaaaa ttctatcttt
     2281 gaattagata acccgaacgt attcatgagc acttgcaaaa aatcgtggga tggcactggc
     2341 acaattatcc gcctatttaa cccatcagac aaagaagaaa ccgttcgctg gacaaccaac
     2401 gcttccagtt ttgaagtttc actagcggag gaaaaaatcg cagaactaaa agaaaacact
     2461 atctgtattc ctaaaaaagg atttgcaact attttgttgg aaggagaata atatgcaaac
     2521 cgaactggtt aatcaaatag aagtaaaact aagaaaaatt tatcaagctg cataccaacc
     2581 cgcatacttg gaaaaaatgc tcgcatgcgc cgaaaactat tctaataatg cgcgtggttc
     2641 gattgatact atttccgaaa aaaacgtcta tcttattgcc tatggcgaca gcattttcga
     2701 aaaaaacaag catccgttac aaacattgaa tgaattccta caagaatatg cgcaagatgt
     2761 tattacagat gtccacttgc tgccgatttt ccctagtacg tcagatgatg gcttctctgt
     2821 cacagactac aagcaaattg acgaacagct tggcgactgg gatgacgttc aaaaaatgtc
     2881 tgagaacttc cgagtgatgc ttgatttcgt agccaatcat atgtcgaaat caagtgattg
     2941 gtttaagcga ttctccgata acgaagcgcc gtacaatcaa tttttcatcg agaaggacag
     3001 ccaatttgat tataaaaacg tcacacgtcc gcggacttct ccgctgttcc acaaatacga
     3061 aaacggtaaa gaactttgga ctacttttag cgaagatcag ttagacttaa atgtccgtaa
     3121 tatcgattgc cttgtagcct taacagatgt actgcttttc tatgcatcca aacaagcgac
     3181 aagcattcga cttgatgcca ttggattttt atggaaaact tctggcacta cttgtatgca
     3241 cctgccagaa acccatgaga tcatcacgct ttggcgtctg ctgattgatg aactatatcc
     3301 aaatctgcaa attatcacag aaacaaacgt ccctcatgaa gaaaacatta gttattttgg
     3361 cgatggtgaa aatgaagcaa atatggttta tcagttcccg cttccgccac ttgtgctcca
     3421 taccttcact tgccatgata caacgaaact ttcgaagtgg gcgaaatcca tttcacaagt
     3481 ttctagcaca gcgacttatt ttaacttctt agcaagtcat gacggaattg gtatgcgccc
     3541 tgcgaccgga attctttccg acgaagaaat caattctctc gtccaaaaag cggtccaaaa
     3601 cggtggccaa gtttcctata aagacaacgc agatggcacg cagtcggtat acgaacttaa
     3661 tattaactac ggtgaagccc tgcaaaaccc gggcgaagac acaactgaag aactcgtaac
     3721 gaaaaaaatt atcgctgctc atagtatttt gctaacactt caaggcgtcc cagcgattta
     3781 ctatcattcc cttctaggtt ctaaaaacga ccttgttggt tacgaagaat ccggtattaa
     3841 tcgccgcatc aatcgtgaaa aactggaaaa aaatcaattg gttcatgaac ttgaaacaga
     3901 cacttatcgc caaaccattt tcacatcgct gaaaaaattg gtgcaaatca gacgaaatca
     3961 caccgctttt tcaccatttg caacccaaga aattttagat ttaggaccag atgtttttgc
     4021 gataaaacgg gaatctgagg aagaatgtat ttacggaatt atcaacgtca cttctcataa
     4081 tatccgcaaa acgctcgctt tctctggcac gaatctatta accaatcaac ccgttacgag
     4141 tgaacttgat ttaactgcgt atgaagttgt ctggattaag aaggcggtcc aatgaaaatc
     4201 gtcatcgcac ctgattcatt caaagagagc gccactgctg ttgaagtagc aaatgctata
     4261 aaaaaaggct ggactaaagc acgtccagcc gatcaaatta gccttgcccc tgtttctgac
     4321 gggggtgagg gttttcttac tgttttaagt gagtcttccg aggtggaatt gtttcaagca
     4381 gaagtaacca acctaaatgg tcacaaaata acggcctcct acggtattct cgctagccaa
     4441 gaaactgcga ttatcgagtc cgccaacacg attggattag atttaatccc agccgtagac
     4501 cgtaatccag cttacgcgag ctctaaaggc gtcggtgaac taattttggc ggcactgaat
     4561 cacaacgtca aaaaaatcat tatcggcctt ggtggaagtg gcacaaacga tggcggcgct
     4621 gggctaatcc aagctttggg cgttgcacta cttgataaaa acaaacagcc tattccgccc
     4681 ggtggcattc atttgcaaga actagcttac attgatgcca gcaaccttaa tccaaagctg
     4741 aaaaacattc aattccaaat agcctgcgac gtcacgaatc cacttcttgg agaaaacggc
     4801 gctaccttcg ttttcggtgc tcaaaaaggc gcaactcccg aaatgctcgt tcaactagag
     4861 cgcgccatgc agaactacgg agcaaaactc gatcaatttt catctcaaaa aatcactaca
     4921 aaaaaaggag ccggagccgc tggtggtatc gttgccggac taatgacttt cctaaatgca
     4981 gacgtgttaa gcggttcagc tctagttatg gaactttcta atatgaagga taaaatgaaa
     5041 gatgcggata tcgttattgt tggtgaagga cgaatggaca agcaatcgat gatggggaaa
     5101 atccctgttc aaattgctca agaagctaaa aaacaaggtt gtttcgtcct agcaatcgtc
     5161 ggtagccttg cactcgaaaa caatatcgcc caacaacacg gtatcgatgc gtttttccca
     5221 aacatcccag aaataacaga tttacccact cttttcgaaa atacaacaaa gaacctcgaa
     5281 cgcacggcgg aaaacattgc caaactaact ttaattggca aataattttt taaactgttt
     5341 tccttctaat caattcatgc tccactttaa ttctttgcaa tttaccttgt tcaaaaatag
     5401 taaaagcatt ttctcccaat ttttttaggt tatgatcaag cgttgtgatt tctaaaacct
     5461 taccaattgg gagattttct tgccctaaaa tagcgacatc ttccggaaca cgcaagccga
     5521 gttttttcac gtgatacata acccctgccg caacctcgtc accattcgca taaatcgcat
     5581 caggccagtc tttcccctct gcaaaaaaat gctccccagc cttcaaacca tcttcaagcg
     5641 tataacattc acttagaaac cgattatcac ccactgaacc aaaaacttgc tcataagcat
     5701 tgatttttcc atatgtactc gtactttcac gcgatgctct ccccgctgta aaagccactt
     5761 ttttataacc ttcatcttcc aaaaactgaa atccagcccg gtatgctttc acgcggtcaa
     5821 tataagagca cgatacctct tttgattcca catactcgca cgcaataatc ggtccatacg
     5881 ctaggtacgg caaaatcacg tcccaattat tggcacgcga agtaataatc aggccatcca
     5941 cctgtttcgt tttaagacgc atcaagtact tttcttcttc tttcggatca tatcctgttg
     6001 gaaaaagtgt caccgaataa cggtttttaa aagctacttc caaaatacca tttacaattt
     6061 tgtcaaacca cgggtgatca ttataaggta taatcacgcc aaccgtattt gttttcccac
     6121 gcgctaaatc catggcacta cggttaggtg aataatctaa ttcatcaata acagcttgca
     6181 cacgggctct tttctcctcc gcaacatacg gatgattatt gagcacacgt gatactgtcg
     6241 tcactgaaac tcccgctaat ttggctattt ctttaatatt tggcatttta aaaacctcat
     6301 tcctaagaaa aaagtgcgga cagatttctc ataccgcact cctattttta tcattaagcc
     6361 atctgttcaa gttcgcttgt tcggatgtct ttttcgacac gaaccgaaac cagtctggca
     6421 tcattcattt cttctactgt aaatcgaagt gtaccgtatt ctactactac tttatcatct
     6481 tcttctggaa ttgtcccagt taaagtaagc acaaatccag ccacagtatc tacgccacgt
     6541 gatggaagtt ccacgtgaaa catttcattg aaatcatcaa gcggcatgcg accttctacg
     6601 ataaatgtcg tctcatcaat tttcttcact tcatccgaaa acacatcatt ttcatcgtca
     6661 atctcgccaa caatttcttc taataaatct tctacagtga caataccagc aacaccaccg
     6721 tattcatcca ttaaaatagc catttgattt ctagttcttt gcatattttt aagtagatcg
     6781 tcaataaaca tcgtctcttg cgcaaaatac gcgtctttaa cgagcgcctt cacatcaatg
     6841 ttttcaaaac ctgactttct cgcttccgca aaaaaatctt tcatatgcag aatacctagc
     6901 accgagtcct gatcgcctgt aaaaacggga acccttgaaa aattctcact taataatgcg
     6961 tcacaaagtt cttccgactc tgtttcggca tcaatcataa acgcatctgt tcgtggcacc
     7021 atcacttcac gcgcatattt attatccatt tcaaatacac cacgaagcat ttgtaattct
     7081 tctacctcaa ttacaccgtc acgtcgaccg gtttcaatca gtagctgcat ttcctctcgc
     7141 gtcatttttt cattatccgt atttttctcc attctcgtta atttcacaag aatatcggtt
     7201 gaaaaagaca ggaatttcac gaacggacga agcacaacac caactgccat gattggtcgt
     7261 acagaaacac gggcaatttt ttctgatttt tgaagtgcta aacgttttgg ataaagttca
     7321 ccgaaaacta acgtgatata tgataacaca atagttacga cgataatgga taactctttc
     7381 gcaaaactac ttcctccaaa aacagattca agtctagtcg caatactagt ggcagctgac
     7441 gcactggaga agaatcccgc aagcgtaata ccaacttgaa tagtagctag aaatttactt
     7501 ggatcatcta cgagtttagc tagcataacc gcttttttat caccggtttc tgcctggctt
     7561 tttacacgat ttttgttcag tgatacaagg gccatctctg ctgaggcaaa gaatgcgttg
     7621 agcatcgtca acaccacaat aagaattaac tgcaagataa tctgctgact ctcggggtca
     7681 gggttcatat ggaactctcc actccttatt ttcatcaaga aaacgaccat gcattttctc
     7741 taaatattcc ggacaatttg ccggttaaga aaattttatc acgccacccc tattactgca
     7801 aggtttcaaa tctccgcgaa aactttcaca gcgtcacttt ccatcatttc aaatggataa
     7861 ggaagcgaaa tctgttcttt atttactgca aaaatccgcg cttttttatt tcgataatcc
     7921 gttaaattac aaaacggact cacgcggaaa gatgtcccta ctatcactat caaatccgct
     7981 tgtcttatag ctgcaagaga ttggtctatc gcactctctg gaatcgcttc ttcataaagc
     8041 accacatccg gacgaatgac gccaccacaa cccgaatgga tatccgattt caagtactcc
     8101 tcagcggtaa cagacattcc gcatttttgg caataacaat gatataaact accgtgaaaa
     8161 tttacgactt tttttgaacc tgctttttca tgcaaaccat caatattttg cgtaataatc
     8221 gtgacatctt tttccgcttc gatttcagcc atttttgtat gaatcgcatt tggctctgca
     8281 tccggatagt acatgttttc tgtaacaaat tgataaaact tctccggttc acgcacaaga
     8341 cacgtatggc tcaacatata ttccgggcta ctcatcccag catataagcc gtttttcgag
     8401 cgataatccg gaattcctga agggacagaa acacccgccc cagttagaaa aacgatgtgt
     8461 tcagcttttt tgagtgcttc attcaactta ttcattcttt aaattccttt catttatatg
     8521 ttgtttatct ttccagttcc accattttcg caaatcaaca tcttgctccg cttcatccgt
     8581 ttccgcaaca tagactgcgc agcgatacgt ataaagtaca catggatcca ttctctcgcc
     8641 tcgcttatcg caagtatcct catataactc aagcggattc ttccctttta aatcagcaac
     8701 ctcttcaacc ccaatttcat ttaacattaa caccattttt ttacctattc ctggtaattt
     8761 tattagttca gttggcatga tttcccttct ctccgtgcat ttttcggttg aaataaaaac
     8821 tgattagtac attgataaaa ataaagcctg caactacgag gaagacatct ccgtaaccaa
     8881 aatgggcggc aacacttgac ccaacaagcg gtccgataac attcccaatg tattgaaacg
     8941 attgattata accaaaaatc cgacctgaaa cctcgcgcgg tgtatttttt gtaagcaatg
     9001 attgaaccgc tggaagcaag gcgccgtctg taagccctaa taagaaacgt aaaatcccaa
     9061 gttgtagtgg gttttgtgcg aaagccattg gaatttggag taacattgaa ccta
//
LOCUS       DABQVC010000113         8906 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.113,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000113 DABQVC010000000
VERSION     DABQVC010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8906
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.113"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            158..1510
                     /locus_tag="IBJ56_001897"
     CDS             158..1510
                     /locus_tag="IBJ56_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HAM3418148.1"
                     /translation="MKKLRIFTLMLAFALFLLGGGIVAQAAEEAPIDEKIVGETVTND
                     GEEFIVDEISDLEDVNSTTGTLDTSDEVEVDLSGLTIENEEAVLTPGLKTIFGGDGRK
                     LVTNTTQYPYSTSAYLVMEFPNGKTYIGSGQLIGEDSVLTAAHCLYGKKDGGWAKKVT
                     VYPGYNGTKAPFGTAKARKMYVPKEWTKKEPSTEDYGVIKLDKNIGTKTGTMGLTTNT
                     SGAITISGYHGDKKGKLYTQTGNISQVTANNVFYRLDTTGGSSGSGVYNSKKQILAVN
                     AYEYLNGTGDNFGTRITKEKLNNIYTWAFDNNLSVSKQKGINYELHVQSKGWMGNVAN
                     SMTSGTVGLGLRAEAMKISLSGMPYSGDIQYRSHVQGSGWQGWLKNGEISGTRGQSKR
                     LEAFQVKLTGNMAKNYSVQYRAHVQNKGWQSWVKDGATAGTTGESLRIEAVQMRLVAK
                     "
     gene            1647..2270
                     /locus_tag="IBJ56_001898"
     CDS             1647..2270
                     /locus_tag="IBJ56_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAM3418149.1"
                     /translation="METWITSIMADFGYIGIFVLIMVENLFPPIPSEIILTFGGFMTT
                     VTSLNVVMVIIVATLGSVVGAILLYKVASYFGKERLTKIVLKYGRILRLKESDIERAE
                     SFFLKYGSWAVFLCRMIPLIRSLISIPAGMTKMKMSRFLILTTAGSLLWNTVLIGLGA
                     VLGESWNEIVVFMDSFSTIIYSVIAILVVVGLGYFFRARFKKTLDEE"
     gene            2364..3347
                     /locus_tag="IBJ56_001899"
     CDS             2364..3347
                     /locus_tag="IBJ56_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HAM3418150.1"
                     /translation="MRIGMRTVKTAIAATLAIILAEWLHLEYAVSAGIIAILSVQNTK
                     KGSLQLAIQRVYSTVLALSIAAVFFMLIGYNAVSFGLYLLIFIPLAVRLHVADGIVVS
                     SVLVSHILLEQSLSFFWFKNELLLMAVGAGIAIILNLYMPKMEDELKRSQQKIEAIMR
                     QILTEMTQGLRNQSEYHDEFGLLNQLKGTLDYAQEKAARNLDNQFFASSHYYSQYVDM
                     RLVQYRILTQMKRHLVAFDHSSEQSMALAEITEKTAQTLDEHNTAEDLVAEITKMVHE
                     FRSSKLPETRAEFENRAILFQFMNDLRYLLEMKRDFYAEFGLKEKEMTRGR"
     gene            3351..3728
                     /locus_tag="IBJ56_001900"
     CDS             3351..3728
                     /locus_tag="IBJ56_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAM3418151.1"
                     /translation="MVEKIGQVMLYVENQAAVRDFWVEKLDFVVVSEEVVNGEIQWIE
                     IAPTKGVETTFVLQNKKKVAEMNPEMNLGTPSILLFGNNVAELYEEYKDKGITVGDLV
                     DLPMGRVFNFSDNEGNYFAICEK"
     gene            complement(3778..6417)
                     /gene="ppdK"
                     /locus_tag="IBJ56_001901"
     CDS             complement(3778..6417)
                     /gene="ppdK"
                     /locus_tag="IBJ56_001901"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HAM3418152.1"
                     /translation="MRKFVYQFSEGSKEMKNILGGKGANLAEMTNIGLPVPPGFIIST
                     DACNDYTANNKHLSEAIFEEVKIHLAELEKQTGKIFGFAENPLLVSVRSGAPFSMPGM
                     MDTVLNLGLNDQAAEGLANLTGDARSAYDSYRRFIQMFGDVVFEIPSYQFEQALSRIK
                     KANNYRLDTELTATDLSNLIDAYKLIFSQATGIDFPQDPLEQLRLAIIAVFDSWMNPR
                     AVIYRRLHDIDASFGTAVNIQAMVFGNTGETSGTGITFTRNPSTGEKKVFGEFLLNAQ
                     GEDVVAGIRTPEPISALEERMPTVYKELLQTCELLENHYLDMQDIEFTIEKGKLYVLQ
                     TRSGKRTAKAAIQAAIDFVHEGKITRQEAIMRVETKQLNQLLHPTFLESALKNGQVIA
                     TGLPASPGAATGQIFFEAKEAVQAAERGIPVILVRNETSPEDIEGMARSNAILTAHGG
                     MTSHAAVVARGMGKCCIAGCAELTINEKDKTIILPTGDTLHEGDALSLDGSSGKVYLG
                     EIALREAKIGGHFDELMAWADAEKRLMIRVNADTPADFKKALLFGAEGIGLCRTEHMF
                     FDEKRIPYVRQMILAESLNERESVLAILKEMQKADFNELFRIADGRSVNIRLLDPPLH
                     EFLPTMKQEIEQLAGAMNRTVPQITNRINGLREANPMLGHRGCRLAITFPEIYRMQAE
                     AIIESAIIVHNEGIDVHPEIMIPLIATKNELSYIKKELQQAVQAIFDREQVVIPYDIG
                     TMIEIPRACVTADEIAEEAAFFSFGTNDLTQLTYGFSRDDATKFLADYYEKDILPKDP
                     FVSIDKNGVGALVEMAVTRGRMTSEHLKMGVCGEHGGDPESIQFFHQLGLSYVSCSPY
                     RVPIARLAAAQAALAEKQLVPTI"
     gene            complement(6436..7248)
                     /locus_tag="IBJ56_001902"
     CDS             complement(6436..7248)
                     /locus_tag="IBJ56_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HAM3418153.1"
                     /translation="MENPVIIYVISDAIGETAQHIIRAVTAQFSLNKPADIRRHAFIR
                     DESTLLETLEEAKAADGIVVQTLVQAKLAEYATNFCVQNNIPNVDLLHTLTAAVEAKT
                     GLKSKQDPGNMRRLDSNYFDRIAAIEFAVKYDDCKDPRGLLDADIVLVGVSRTSKTPL
                     SSFLANQNWKVANVPLVPEIPIPAELFQIPAERIIGLTTTPEKLAQIRKVRLKSIGLD
                     EASSYSSEKRILEELEYGYDTFKKLGCQVIHVEDKAIEETAALITEIITSYH"
     gene            complement(7261..7878)
                     /locus_tag="IBJ56_001903"
     CDS             complement(7261..7878)
                     /locus_tag="IBJ56_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3418154.1"
                     /translation="MIPIELSPRQHQIVAYVRANEPATGDSIAAHLKLTRATIRADLS
                     ILTMTGILDARPKVGYFYSGLETNPIHFDEIRQLKVADIMTQPFFAKKETSVYDAIVM
                     LFMEDIGSLYVVDEDLLVGLVSRKDLLKGALADADTKATPIATIMTRMPNLVTVTKND
                     TVLHAAEQLVFHQIDSLPVLENTKVVGKISKTRITALFVDTIKKV"
     gene            complement(8000..8632)
                     /locus_tag="IBJ56_001904"
     CDS             complement(8000..8632)
                     /locus_tag="IBJ56_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HAM3418155.1"
                     /translation="MNVTSYNWKEEVANAITHGIGFILSIPALVLLIIFAAGKDNPLY
                     LTSFLIYGISLMLLYICSTLLHSFKPCKARTVFNIMDHAAIYVLIAGSYTPFVLITIQ
                     GTLGWTLFGVIWGLAIAGIIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYAGLTPT
                     GFWLLATGGIMFTVGAVFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV"
     gene            8811..>8906
                     /locus_tag="IBJ56_001905"
     CDS             8811..>8906
                     /locus_tag="IBJ56_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HAM3418156.1"
                     /translation="MRKIKIITDSTAGLTLEEAAKWNIDVLYLTVE"
BASE COUNT         2788 a         1561 c         1883 g         2674 t
ORIGIN      
        1 tatagttata cagtaaataa atatgtcaaa aatagctact aagaaaattg acttatattg
       61 ggaagtttta aactaattta agtttcaaca atgcgataca atcaagtgat tttttgatat
      121 atttatttgc taatagacaa aaaaaggaga tgcaactatg aaaaagctta gaatatttac
      181 tttgatgctt gcttttgctc tatttttatt aggtggagga attgttgcac aagcagcaga
      241 ggaagcccca atcgatgaaa agatagttgg ggaaacggta acaaatgacg gagaagagtt
      301 tatagtcgat gagattagtg atttagaaga tgttaattca acaacgggga cgttagatac
      361 atctgatgaa gttgaggttg atttatcagg attaactatt gaaaatgagg aagccgttct
      421 aaccccaggt ttaaaaacga tttttggcgg agatggtaga aaacttgtaa caaatacaac
      481 tcaatatcca tattcaacga gcgcttacct tgtaatggaa tttccaaatg gaaaaactta
      541 tataggtagt ggacaattga ttggtgaaga ttctgtactt acagccgctc attgtttata
      601 tggtaaaaaa gatggtggat gggcaaaaaa agtgactgta tatcctggat ataatggcac
      661 gaaagctcct tttggaacag caaaagcaag aaaaatgtat gttccaaaag aatggacaaa
      721 aaaagaacct tctacagaag attatggtgt tattaaatta gataaaaata ttgggacaaa
      781 aactggaaca atggggttaa caactaatac atctggtgca attactatta gtggttatca
      841 tggtgacaaa aaagggaaat tgtacactca aactggaaat atctctcaag tcactgcaaa
      901 taatgttttt tatagattag atacaacagg tggtagtagt ggtagtggtg tttataattc
      961 taaaaaacag attttagcag taaacgcata tgaatattta aatggtaccg gggacaactt
     1021 tggtacaaga ataacaaaag aaaaactaaa taatatttat acttgggcgt ttgacaataa
     1081 tctttctgta agcaaacaaa aagggataaa ttacgagctc cacgtccaaa gtaagggatg
     1141 gatgggaaac gttgctaata gtatgacttc gggcacagtt ggccttggct tacgagcaga
     1201 agcaatgaaa attagtttat cagggatgcc gtattctgga gatattcaat atcgctcaca
     1261 tgtacaaggt agtggatggc aaggttggtt gaaaaatggg gaaatttctg gaactcgtgg
     1321 acagtcaaaa cgtctggaag ctttccaagt gaaattaact ggaaatatgg ctaaaaatta
     1381 tagtgtgcag tatagagcgc atgtccaaaa taaaggttgg caaagttggg ttaaagatgg
     1441 agcaacagca ggaacaacag gagaaagttt aagaatagaa gctgtacaaa tgcgactagt
     1501 tgcaaaataa atttaaaaga atttggtgtg taaaatgcca aattcttttt cttttaccaa
     1561 attgattgaa aaagtagagc tagtatagta gaattgaaaa gcaagcactt actttaaaag
     1621 ggaaataaag tacaggagtg tgttttttgg aaacttggat tacaagtatt atggctgatt
     1681 ttggctatat aggtattttt gttttgatta tggttgaaaa cttgtttcca cctattccct
     1741 ctgagattat cttaactttt ggtggattta tgacgacagt tacatcattg aatgtcgtga
     1801 tggtgattat tgtagcaaca ctaggttctg ttgtgggcgc aattttactg tataaagtcg
     1861 cttcttattt tggtaaagaa cgactcacga aaattgtatt aaaatacggc cggattttgc
     1921 ggctgaagga atctgatatt gaacgcgcag aaagtttctt tttgaaatat ggaagttggg
     1981 ctgtattttt atgtagaatg attccactaa tacgaagcct gatttcgatt ccagctggga
     2041 tgaccaagat gaaaatgtcg aggtttctaa ttttgacgac cgcgggaagc ttactttgga
     2101 atacagtttt aattggactt ggagctgtgc ttggggagtc atggaatgaa attgttgttt
     2161 ttatggatag cttttcaaca ataatttata gcgtcattgc gatacttgtt gtggtcggtt
     2221 taggatactt tttccgagca cgtttcaaaa aaacactaga tgaagaataa tgtaggacct
     2281 tgaggaatga tcttcaaggt ttttcttttg cgattttcgc tttcgtgcta tgataggttg
     2341 gacatagaaa ggggagtgga catatgcgga ttggaatgcg aacggtgaaa accgcgattg
     2401 cagcgacact ggcgataatt ttggcggaat ggctacactt ggaatatgca gtttcggcag
     2461 ggattatcgc aattttaagt gtacaaaata cgaaaaaagg gtctttacaa ctagcgattc
     2521 agcgggttta ttcgaccgtt ttggcactat ctattgctgc cgtatttttc atgctcattg
     2581 gttataacgc ggtgagtttt ggactttatt tactgatttt tattccgctt gctgtaagac
     2641 tgcatgttgc tgacggaatt gttgtgagct cggtactcgt atcgcatatt ttactcgaac
     2701 aatcattatc ctttttctgg tttaaaaatg aactgttact tatggcagtt ggcgctggca
     2761 tagcgattat tttaaattta tatatgccaa aaatggaaga cgaattaaaa cgcagccaac
     2821 aaaaaataga agcaattatg cggcaaattt tgacggaaat gacgcaaggg cttcggaatc
     2881 agtcggagta tcatgatgag tttggcttat taaatcaatt aaagggtaca ttagactatg
     2941 cacaggaaaa agcagcaaga aatttagaca atcagttttt tgcttcttcc cactattatt
     3001 cgcagtacgt cgatatgcgg cttgtgcaat atcgaatttt aacacagatg aaacggcatt
     3061 tagtcgcgtt tgatcattct tctgagcaaa gtatggcgct ggcagaaatt acagaaaaaa
     3121 cagcacagac gttagatgag cataatacag cagaggattt agtggcggaa attactaaga
     3181 tggtgcatga gtttcgaagt agtaagctcc cagagacacg agcagaattt gaaaatagag
     3241 cgattttatt ccaatttatg aatgatttgc gctatttatt agaaatgaag cgtgactttt
     3301 atgcggagtt tggactaaaa gaaaaagaaa tgacgagggg acgatgaacg atggttgaaa
     3361 aaattggtca agtgatgtta tatgtagaaa atcaagctgc agtgagagat ttttgggtag
     3421 aaaaattaga ttttgtcgta gtttcagaag aagtggtaaa tggcgaaatt cagtggattg
     3481 agatagcgcc aacaaaaggt gtagaaacta cttttgttct tcaaaacaaa aagaaagtgg
     3541 cggaaatgaa cccagaaatg aatcttggga caccatctat tttactattt ggaaataatg
     3601 tcgcagaact ttatgaagaa tataaagata aaggcattac ggttggtgat ttggtcgatt
     3661 taccaatggg ccgggtgttc aatttttcgg ataacgaagg aaattacttt gcgatttgtg
     3721 aaaaataata ggagaaaaag ccagatgaca gtctatttga ttgtcatctg gcttttttta
     3781 gatagttgga actaattgtt tctcagctaa tgctgcttga gctgctgcaa ggcgggcaat
     3841 gggaacgcgg tacggggaac aagaaacata gctaagtcct aattgatgga agaactggat
     3901 agattccgga tcgccaccat gttcgccgca aacccccatt tttaaatgtt ccgaagtcat
     3961 tcgtccacgt gtaactgcca tttcaactag tgcgccgaca ccatttttat caatcgaaac
     4021 aaatggatct ttaggtaaaa tatctttttc ataataatcg gctaggaact tggtcgcatc
     4081 atcacgtgaa aaaccataag tgagctgtgt taaatcattg gttccaaagc taaagaacgc
     4141 tgcttcctcg gcgatttcgt ctgcagttac acacgctcgc ggaatttcaa tcattgttcc
     4201 gatatcatag ggaatcacca cttgttctct atcaaaaata gcttggactg cttgttgcag
     4261 ttcttttttt atatagctaa gttcgttttt cgtagcgatg agtggaatca tgatttccgg
     4321 gtgaacatct attccttcat tatgaacgat aattgcactt tcgataattg cttccgcctg
     4381 catccggtaa atttctggga acgtaatagc aagccggcaa ccacgatgtc cgagcatggg
     4441 attggcttct cttagtccgt tgattcggtt tgtaatttga ggaacggttc gattcatcgc
     4501 gccagccaat tgttctattt cttgcttcat tgttggtaaa aattcatgta aaggtggatc
     4561 aagcaagcga atgtttaccg aacgaccgtc tgcaatacgg aataattcat tgaaatcggc
     4621 tttttgcatt tcttttaaaa ttgctaaaac agattcgcgc tcgtttaatg attctgctaa
     4681 aatcatttgg cgtacataag gaattcgttt ttcatcaaaa aacatatgct cggtacggca
     4741 gagaccaata ccttccgcac caaataaaag cgctttttta aagtctgctg gggtatctgc
     4801 atttactcga atcattaatc ttttctccgc atcagcccag gccatcagct catcaaaatg
     4861 gccaccaatt ttcgcttctc tgagggcaat ttctccaagg taaactttgc cggaactacc
     4921 atcaagggag agcgcatcac cttcatgcag tgtgtcgcca gtaggaagaa tgatcgtttt
     4981 atctttttca ttaatagtaa gttcggcaca tccagcgata cagcattttc ccattccgcg
     5041 ggcaacgacg gcagcgtgag aagtcatacc accatgagcg gttaaaatag cgttactccg
     5101 tgccatgcct tcgatatcct caggagaagt ctcattacga actaaaatga caggaatgcc
     5161 acgttcggct gcttggacag cttcttttgc ttcaaagaaa atttgccccg ttgcagcacc
     5221 agggcttgca ggtaaaccag ttgcgatgac ttgaccattt ttaagagcgc tttcaagaaa
     5281 agttggatga agtaattggt ttagttgttt tgtttccaca cgcataatgg cttcttgacg
     5341 agtgattttt ccttcatgga caaaatcaat ggccgcttga atagctgctt tggctgttcg
     5401 cttgccactt ctagtttgta agacatagag tttgcctttt tcgatggtaa attcaatatc
     5461 ttgcatgtct aaataatgat tttcgagaag ttcacaagtc tggaggagtt ccttgtaaac
     5521 agtgggcatt ctttcttcca gcgcacttat cggctcaggg gtgcgaattc ctgcaaccac
     5581 atcttcacct tgcgcattca gtaaaaattc cccgaacacc ttcttttcac cggtggaagg
     5641 attgcgggta aaggtaatgc cagttccact cgtttctcca gtgtttccaa aaaccatcgc
     5701 ttgaatatta acggctgtac caaaacttgc atcaatatca tgtaatctgc ggtaaataac
     5761 agcgcgagga ttcatccagg aatcaaaaac agcgattatc gcaagccgca gttgttccag
     5821 tggatcttgt ggaaagtcta taccagttgc ttggctaaaa attagtttgt aagcatcgat
     5881 gagattgctt aaatcagtcg cagttaattc tgtatctaag cggtagttgt ttgctttttt
     5941 gatgcgacta agagcctgtt caaattggta gcttggaatt tcaaaaacaa cgtcaccgaa
     6001 catttgaata aaacggcggt atgaatcata agccgaacga gcatcaccag ttaagttggc
     6061 gagcccttct gcggcttggt catttaaacc gagattgagc acggtatcca tcataccggg
     6121 catcgaaaaa ggggcacccg aacgaacgga aacgagtaga gggttttctg caaatccgaa
     6181 aattttcccg gtttgttttt ccagttctgc taaatgaatt tttacttctt caaatatagc
     6241 ttcggaaagg tgtttattgt ttgccgtgta atcgttacag gcatcggtcg agataataaa
     6301 accaggaggc acaggcaaac cgatattcgt catttcggcc aaattagcac cttttcctcc
     6361 taaaatattt ttcatttctt tagaaccttc actgaactga tagacaaatt ttctcacatt
     6421 attcacctct tcaaattagt ggtaactcgt gataatttcc gtgattaggg cagcggtttc
     6481 ctcaatggct ttatcttcta catgaatgac ttggcagcca agctttttga atgtgtcata
     6541 accatattct agttcctcta aaatgcgttt ttcactggaa taactgcttg cttcgtctaa
     6601 accaatggat tttaaacgga ctttgcgaat ttgcgctagt ttttctgggg tggttgtaag
     6661 gccgataata cgttccgctg ggatttggaa aagttcagct ggaatcggaa tttcgggaac
     6721 aagtggtaca ttagcaactt tccaattttg attggcaaga aagctactca gaggggtttt
     6781 gctcgttctt gataccccaa caagaacaat atctgcatct aataggccac gtggatcttt
     6841 acaatcatca tattttactg caaattcaat ggcagcaata cgatcaaaat aattgctatc
     6901 aagacgacgc atatttcctg ggtcttgttt agattttaag ccagtttttg cttcgaccgc
     6961 agcggttagt gtatgtaaca aatctacgtt tggaatattg ttttgcacac aaaaattagt
     7021 ggcatactca gctaatttag cttgtacgag cgtttgaacg acgataccat ctgccgcttt
     7081 ggcttcttct aacgtttcaa gtaaagtgct ctcatcacga ataaaagcat ggcggcgaat
     7141 gtccgcaggc ttattaagcg aaaactgagc tgttaccgcg cgaataatat gttgagcagt
     7201 ttctccgata gcatctgaaa taacgtatat aataaccgga ttttccatat tttcctccta
     7261 ctaaaccttt ttaattgtat ctacaaatag cgcagtaata cgggtttttg aaatttttcc
     7321 gacgactttg gtgttttcta gaacaggaag cgaatcgatt tggtggaata cgagttgttc
     7381 tgcggcatgt aacacagtgt cgtttttcgt aacggtaacg aggtttggca tccgcgtcat
     7441 aattgtcgca atcggcgtcg cttttgtatc tgcatcagca agggcgcctt ttagcaagtc
     7501 ttttctagag acaagcccaa ccaaaagatc ctcatcaacg acgtataaac taccaatatc
     7561 ttccataaag agcataacaa tcgcatcata cacactcgtt tctttttttg cgaaaaatgg
     7621 ttgcgtcata atatcggcta cttttaactg acgaatttca tcaaagtgaa ttggattcgt
     7681 ttctaaacca gagtaaaagt aaccaacttt tggacgagca tctaaaatgc cagtcatggt
     7741 taaaattgac aagtcagctc gaatggtggc tcgtgttagt tttaaatgcg cagcgataga
     7801 gtcacctgta gcaggctcat tcgcgcgaac ataggcaaca atttgatgtt gtctaggaga
     7861 aagttcgatg ggaatcacat ccttttattg tgttatgcta atcattatat agtatgacat
     7921 aattaaaaac aagtctcaat tgtgacatac tatataaaaa gaccttctcg cattggagaa
     7981 ggcctttgca ttgcgttatt taaacataaa ataaaataca gaaatacata aaagcggttc
     8041 ccgcgataac aaataaatgc caaatcgcgt gcatatacgg gacacgaggg atactgtaaa
     8101 aaacagcacc tactgtaaac ataatcccac cagttgcaag taaccaaaac ccagttggag
     8161 tcagcccggc ataaagcggt ttaatggcaa acataaccat ccaacccata agtaagtaaa
     8221 cacttgtcga caaaagtttt aatttgccag tcatgaatat cttataaata atcccagcaa
     8281 ttgcgaggcc ccaaatgaca ccaaatagtg tccagccgag tgtcccttga atcgtaatca
     8341 aaacaaatgg cgtataactg ccagcaatta atacataaat cgctgcgtgg tccataatgt
     8401 taaaaaccgt ccgcgccttg caaggtttaa aactatgaag cagggtggaa caaatataaa
     8461 gcaacatgag ggaaattcca taaattaaaa aacttgttaa ataaagagga ttatcttttc
     8521 cggcggcgaa tattataagt aagacgagcg cgggaatact aaggataaac ccaataccat
     8581 gcgttatagc attggctact tcttctttcc aattgtaaga agtgacattc attttatcac
     8641 catacttttc tacaaatttt gtgtgtttta tatatctatc atacgctaaa aaatacagaa
     8701 tagaaagaca aataccattt ctttctcttt tcttaaaact agtttatagg ttgtgtatac
     8761 tgccggggat gttataataa gataaaataa gcaaaactgg atgtggctat atgagaaaaa
     8821 taaaaattat cacagattca actgctggac taacattaga agaagcagca aaatggaata
     8881 ttgatgtttt atatttaacc gtagaa
//
LOCUS       DABQVC010000114         8903 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.114,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000114 DABQVC010000000
VERSION     DABQVC010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8903
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.114"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..377
                     /locus_tag="IBJ56_001906"
     CDS             <1..377
                     /locus_tag="IBJ56_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418157.1"
                     /translation="KINNQLIYGRDKTWLESLHQNTNQLIITVEIDFEDESTLQKMVF
                     NGLIFYSSTELDTYEKSKWSSSWLQSQSNFEIIEQSNLINERVKIRSDYNIQDFKHYR
                     ISTYDYIIDVIAKNYQLKEAHK"
     gene            complement(419..1780)
                     /locus_tag="IBJ56_001907"
     CDS             complement(419..1780)
                     /locus_tag="IBJ56_001907"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HAM3418158.1"
                     /translation="MKVIKFGGSSLASGIQLNKVFQLVAEDPDRKIVVVSAPGKRFKE
                     DTKVTDLLIDCAAKALLGEDTSELFESVIARYAGIALDTGMSDEIINQIRADLQATIS
                     SDKSDPDKFLDRMKASGEDNNAKLIAAYFKFKGLNANYINPKDAGLLVTDEHASAQVL
                     PESYDRLFALREREGIIVFPGFFGYTKDGEISTFSRSGSDITGAIVANGAQAELYENF
                     TDVDAVYAVNPAIVKNPKKVLELTYREMRELSYAGFSVFHDEALIPAFHAGIPVHIKN
                     TNNPDSCGTRVVHERENNNGPVVGIASDDGFCSIYISKYLMNREIGFGRKVLQILEDA
                     GLNYEHMPSGIDDLTIIIRENQFGEDTEQTIMSRLKEELNADQVIMQHGISLIMVVGE
                     TMRHNVGITSRASKALSDAKVNIEMINQGSSEVSIMFGVKEEQENTAVRSLYNEFFSE
                     VFV"
     gene            2025..2339
                     /locus_tag="IBJ56_001908"
     CDS             2025..2339
                     /locus_tag="IBJ56_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3418159.1"
                     /translation="MKNIVLVCAAGMSTSLLVTKMRKAAEERGETCEIEAYSIAEVSN
                     LIDDADVVLLGPQVRYQKKTVDELAAGKIPVDVIDMAAYGTMNGEKVLGQALDLINGF
                     QK"
     gene            complement(2382..3062)
                     /locus_tag="IBJ56_001909"
     CDS             complement(2382..3062)
                     /locus_tag="IBJ56_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418160.1"
                     /translation="METLLSFDKVYKDYPSGPSIIHALKETNFEAKKGELIAIVGPSG
                     SGKSTLLSLAGALLTPTGGTISINGKSVGNLSSKEQTALRLEEIGFIFQAAHLVPYLH
                     VKDQISFIGKMAGKSAAELEKDTASLLSQLGISDRANFYPKDLSGGQKQRVAIARALI
                     NQPSVILADEPTASLDTERSREVVELIRNEVVQTSRTAIMVTHDERMLDLVNHVYRME
                     DGILTQES"
     gene            complement(3062..4165)
                     /locus_tag="IBJ56_001910"
     CDS             complement(3062..4165)
                     /locus_tag="IBJ56_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418161.1"
                     /translation="MFLGLRELVYSKLRYILVTGIMVLIMLLSLILSGLANGLAYDNA
                     SSVADNGVPYYVLSKDAQDKLSRSQFPESKLADVKKDANVKDAAVLGQSMQTLKRESD
                     DKKFSVALFGIQPDSFLAPKISDGANIQVTKPDEIVVDSSLKSDGIKIGDVLMDDILN
                     RELTVVGFTENQKYSHAPVVYINIATWQEINPVLYHQKIPQTSTIAIKTENPDKGVTL
                     SDKDLTTIDHKGFLNQIPGYSAEQMTLNMMIFFLIIIGGFILTAFFYVMTLQKTTQFG
                     ILKALGTKTSYLVKSIITQVVIISIISILISVGVTLLLPSIMPAAMPFRLSPMTIALY
                     SGLFFLVALFGALLSLRRIAKVDALDAIRGGDE"
     gene            complement(4304..5470)
                     /locus_tag="IBJ56_001911"
     CDS             complement(4304..5470)
                     /locus_tag="IBJ56_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HAM3418162.1"
                     /translation="MSQFDEVIPRIGTNSEKWDGAEELFGRKNIIPMWVADMDFRAPQ
                     PVLDAFQRQIDHGIFGYSTKSAALVEAIIDWNKEQHQFEIDPSALFFNGAVVPTISLA
                     IRSLTNEGDAVLMVSPIYPPFFNVTKATERKVVMSPLIYENRQYRMDFNDLEKRMKEE
                     KVKLFLLCNPQNPGGRCFTKEELVELAKLCEKYQIPIVSDEIHADLVMKNHKHVPMMV
                     AAPFYQDQIITLMAATKTFNLAAIKASYYIITNKDYQAKFAAEQKYATTNGLNVFGIV
                     GTEAAYRHGVPWLKELKEYIYSNYEYVKAALEKEVPEVGVTDLEATYLMWLDCRALPK
                     DEKTIYADLIEAGVGVQMGSGFGHSGKGFVRFNIACPKETLEKAVKLLIQGLKK"
     gene            5624..5977
                     /gene="yugI"
                     /locus_tag="IBJ56_001912"
     CDS             5624..5977
                     /gene="yugI"
                     /locus_tag="IBJ56_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein 13"
                     /protein_id="HAM3418163.1"
                     /translation="MSTFKVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFV
                     KDIHDFLEVGQEVKVKILDIDEEKNKISLSIRATEEAPKEQPTKKKQVSSSENDEGFN
                     TLRDKLEEWIKKADK"
     gene            6125..6532
                     /locus_tag="IBJ56_001913"
     CDS             6125..6532
                     /locus_tag="IBJ56_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HAM3418164.1"
                     /translation="MKRSIHVQAFVYNEKKDEILVVRDRNLTWAFPGGHVETNQTMEE
                     ALASKVKEQTNIDIEIESILHCKERRATWEHVCTFVFRAKPVGNALLASNDDNVFRVK
                     WIPIPLADDLLAVDQLSLNELVRSEGVLYENYT"
     gene            6634..7986
                     /locus_tag="IBJ56_001914"
     CDS             6634..7986
                     /locus_tag="IBJ56_001914"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HAM3418165.1"
                     /translation="MTHIKFDYSKALRFFEERELDYLEPAVKAAHDSLHNGTGAGNDA
                     LGWINLPTDYDKEEFARIKKATEKIHSDSDVLIVIGIGGSYLGARAAIETLNHSFYNV
                     LEKGARKTPQVFFAGNSISSSYLHDLIEVVGDRDFSVNVISKSGTTTEPAIAFRVFKE
                     LLIKKYGEEGAKKRIYATTDKAKGALKTLADNEGYETFVVPDDVGGRFSVLTAVGLLP
                     IAVSGVDIDALMNGAAAASKDFDKPELKNNIAYQYAAARNVLYRKGKVTELLISYEPG
                     LQYFNEWWKQLFGESEGKDKKGIYPSSANFSTDLHSIGQYIQDGRRNLFETVIKVDKP
                     RHNLTINKEEVDLDGLNYLAGETVDFVNTKAFEGTLLAHTDGEVPNFVVEVPELDAYT
                     FGYLVYFFEKAVAISGYLNGVNPFDQPGVEAYKANMFALLGKPGFEDKKAELEKRLND
                     "
     gene            8091..8849
                     /locus_tag="IBJ56_001915"
     CDS             8091..8849
                     /locus_tag="IBJ56_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAM3418166.1"
                     /translation="MLSIERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLE
                     KDKKLKRTHGGVMIEEKVVSEPNWKKRSEVRYEEKQRIATLAATMVKDGDTIILDAGT
                     TTGHIATALKDRSKLTVITNDINVASIMRFSPSKVIVTGGVIYPETFILNGMITSGTL
                     QSIHVHKAFVTTPALDIDKGLMHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYK
                     YAALDEISSIITGKEIDPVLKEQFEEKGMQIYTT"
BASE COUNT         2925 a         1799 c         1623 g         2556 t
ORIGIN      
        1 taaaaatcaa caaccaacta atttacggca gagacaaaac atggcttgaa agcttacacc
       61 aaaacaccaa ccaacttata ataacggttg aaattgattt tgaagatgaa agcacgctcc
      121 aaaaaatggt ttttaacgga cttattttct attcatccac cgaactcgac acctacgaaa
      181 aaagtaaatg gagttctagt tggttacaaa gccaaagcaa tttcgaaata atcgagcagt
      241 caaatttaat aaacgagcga gtgaaaataa gaagtgacta caacatccaa gatttcaagc
      301 attaccggat tagtacgtat gactacatta ttgatgtaat agcaaaaaac tatcaattaa
      361 aggaagctca taaataaaac aagtttctcg tcagttaaga tgagaaactt gttttatttt
      421 aaacgaatac ttctgaaaag aattcattat atagtgagcg aaccgcagta ttttcctgct
      481 cttccttcac gccaaacatt atgctcacct cagaagaacc ttggttaatc atttcaatat
      541 ttactttcgc atcggataaa gcttttgaag cacgagacgt aatcccgaca ttatggcgca
      601 tggtctcacc aacaaccata atcagcgaaa tcccgtgttg cataatcact tgatctgcgt
      661 tcaattcttc tttcaaacga gacataattg tctgctcggt atcttcgcca aactgatttt
      721 cgcgaataat aatcgttaaa tcatcaatcc cagacggcat atgttcatag ttcaacccag
      781 catcttccag aatttgcaac actttccgtc cgaagccgat ttctcggttc atcaaatatt
      841 tactaatata aatgctacaa aagccgtcat cactagcaat tccaacgact ggaccattgt
      901 tattttcgcg ttcatgaacg acacgcgtac cacaagaatc aggattgttc gtatttttaa
      961 tatgcaccgg aatacctgca tggaaagccg gaattaaagc ttcatcatga aaaacagaga
     1021 agccggcata tgaaagttca cgcatttccc ggtaagttag ttcaagaact ttcttcggat
     1081 ttttcacgat agcgggattg actgcgtaga ctgcatccac atccgtaaag ttctcgtata
     1141 actcggcttg ggcgccgttt gccacaatcg ctccagtaat atcagagcca cttctagaaa
     1201 acgtgctaat ttcgccgtct ttcgtataac cgaaaaatcc tgggaaaaca ataatgcctt
     1261 ctctttctcg aagtgcaaac aaacgatcat aggattctgg taaaacttgc gcgctagcat
     1321 gttcatctgt cacaagtaaa ccggcatctt ttggatttat ataattggcg tttaagcctt
     1381 taaatttaaa gtaagcggcg attaattttg cgttattatc ttcgccacta gctttcattc
     1441 gatctaaaaa tttatcagga tcgcttttgt ccgatgagat agttgcttgt aaatctgcgc
     1501 gaatttgatt gataatttcg tcgctcatcc ctgtatctag cgctatccct gcatatcttg
     1561 caatgacaga ttcaaacaat tcacttgtat cttccccgag aagtgccttt gccgcgcaat
     1621 caataagtag gtcagtcact tttgtatctt ccttgaaacg tttacctggt gcagaaacaa
     1681 caacgatttt cctatcagga tcctccgcta caagttggaa aaccttattt aattggatcc
     1741 ccgatgctaa agagcttccg ccaaatttaa ttactttcat gcaacacact cctgatctga
     1801 attttttatc tcccgaaagt gttgtttttg gatgatgcga aattttctga cctttcggat
     1861 aaagttattg tctattatcg ctctttttcc gtgaaatcgc aatgtttttt cgtgttttta
     1921 attattttct ctcgacttcg gtagtttact tgtttaaaaa gctaaaggta gttataataa
     1981 gagtgtacaa aaaaagcagc cttaatctga aaggaaagat tacgatgaaa aatattgttt
     2041 tagtatgtgc ggcagggatg tcaacaagcc ttttagtaac aaaaatgcgt aaagcagcag
     2101 aagaacgcgg agaaacttgt gaaattgaag cgtactccat tgctgaagta agtaacttaa
     2161 ttgacgatgc agatgttgta cttttaggac cacaagtgcg ttaccagaaa aaaacagttg
     2221 atgaactagc tgctgggaaa attccagtag atgtaatcga catggcagct tacggtacga
     2281 tgaacggtga aaaagtacta ggtcaagcat tagacttaat caacggtttc caaaaataaa
     2341 caataaaaaa acctgtgtgg cacttaagcc acgcaggttt tttagctttc ttgggtaagt
     2401 attccgtctt ccatacgata cacatggttg actaaatcta gcatacgctc atcatgtgtt
     2461 accatgattg ctgttcggct tgtttgcaca acttcattcc gtataagctc gacaacttca
     2521 cgacttcttt cagtatcaag actcgcagtt ggttcgtcgg ctaaaataac ggaaggttga
     2581 ttaataagcg cacgagcaat agcgacacgt tgcttttgac cgccagataa atcttttgga
     2641 tagaaatttg cgcgatcact aatgccaagt tggcttagaa gtgaagctgt atctttttca
     2701 agctccgccg cacttttccc agccattttt ccaataaagc tgatttgatc ttttacgtgt
     2761 aaataaggaa ctaagtgagc tgcttggaaa ataaagccaa tttcttctaa acgaagagca
     2821 gtttgttctt tggaagataa attcccgact gattttccgt taatagaaat cgttccacca
     2881 gtcggtgtta atagcgctcc agccagagaa aggagcgtac ttttaccaga accactcgga
     2941 ccaacaatcg cgattagttc acctttttta gcttcaaagt ttgtttcctt cagtgcatga
     3001 ataattgaag gaccggacgg gtagtcttta tacactttat caaaagatag tagagtttcc
     3061 attattcatc acctcctcga atggcatcta acgcatctac tttagcaatt cgtctaagtg
     3121 atagaagggc gccgaacaga gcaactaaaa agaataaacc actataaagc gcaatcgtca
     3181 tcggacttaa tctaaacggc atcgctgctg gcataatact tggaagcagg agcgttacac
     3241 cgacactaat taaaatacta ataatcgaaa taatcaccac ttgagtaata atgctcttaa
     3301 ctaagtaact tgttttcgta cccagtgctt tcaaaatacc aaattgtgtt gttttttgaa
     3361 gcgtcatgac atagaagaat gcagttaaaa taaatccgcc aataatgatt aagaagaaaa
     3421 tcatcatgtt aagcgtcatt tgttccgcgg aataacctgg aatttgattt aagaaacctt
     3481 tatgatcaat cgttgttaaa tctttatctg aaagggttac gcctttatca ggattttctg
     3541 ttttaatcgc aatagtactt gtttgcggga ttttttggtg atataaaaca ggattgattt
     3601 cttgccaagt cgcgatatta atataaacaa cgggagcatg gctatacttt tgattttctg
     3661 taaagccgac aaccgttaat tctctattta aaatatcatc catcaaaaca tcgccaattt
     3721 tgattccgtc tgatttcaaa gaagaatcga cgacaatttc gtcaggtttt gtcacttgta
     3781 tgttagctcc atcagaaatt ttaggagcga gaaagctatc tggttgaata ccgaaaagtg
     3841 cgacgctaaa ctttttatcg tcactttccc gttttaacgt ttgcatagat tgaccgagaa
     3901 ccgcagcatc ttttacattc gcatcttttt tcacatcagc gagtttggat tctgggaact
     3961 gagatcgaga taatttgtct tgggcgtctt tgctgagaac ataatatgga accccgttat
     4021 ctgctacaga tgaagcatta tcgtaagcca gcccgtttgc caaccctgat aaaataagtg
     4081 atagtaacat aattaagacc atgatgcctg ttactaaaat atagcgcaac ttagaataaa
     4141 ctaattcacg aagccctaaa aacatcgatt ataccaactc ctttaaattt atgtaaacgg
     4201 aaaatgaaca ctatttcact ttccaaagaa tagtatacca aagctatatt caatttccta
     4261 aagaaagaaa ctaagtgttt gctacttagt ttctcaaaat aagctatttt tttaagcctt
     4321 gaatcagaag tttcacagct ttttctaaag tttcttttgg acaggcgatg ttaaaacgga
     4381 caaagccttt cccggaatgt ccaaatccag aacccatttg aacaccaaca ccagcttcga
     4441 ttaaatcagc ataaatcgtt ttttcgtctt ttggaagagc gcgacaatca agccacatca
     4501 agtaggttgc ttctaagtcg gtcacaccaa cttcgggtac ttctttttcg agtgctgctt
     4561 tgacatattc atagttgcta taaatatatt ctttcaactc ttttagccaa ggcacgccgt
     4621 ggcgatacgc tgcttctgta ccaacaatcc caaagacatt gagcccatta gttgtggcgt
     4681 acttttgctc cgcagcgaat ttggcctgat aatctttatt cgtaataata tagtaggaag
     4741 ctttaatcgc cgccaagtta aatgttttcg tagccgccat taaagtaata atttgatctt
     4801 gataaaacgg tgctgcgacc atcattggca catgtttatg atttttcatc actaagtcag
     4861 catgaatttc atccgaaaca atcggaattt ggtatttctc acatagtttc gctaattcca
     4921 caagttcttc cttggtaaaa caacgaccac caggattttg cggattacat agaaggaata
     4981 attttacctt ttcttctttc atccgttttt ccaaatcatt aaaatccatt cgatattgac
     5041 ggttctcata tataagtggc gacataacca cttttctctc agtggctttc gttacattga
     5101 aaaatggtgg gtaaatcggc gaaaccatta gaactgcatc gccttcattt gtgagagagc
     5161 gaatcgctaa cgaaattgtc ggaacaaccg ctccattaaa aaataacgcg ctcggatcga
     5221 tttcaaactg atgctgctct ttgttccaat cgataatagc ttcgacaagt gccgctgact
     5281 tggtcgaata accaaaaatc ccatgatcga tttgacgctg aaatgcatca aggacaggct
     5341 gcggcgcacg gaaatccata tccgctaccc acatcggaat aatatttttt ctgccaaata
     5401 attcttctgc cccatcccac ttctctgaat tagttccaat acgcggaatg acttcatcaa
     5461 attgactcaa atatgtcacg ctccttctct ttcattcgcc tcaattatag cataaattcc
     5521 accctaaaag ctcaccggag aaggatttag aataattgtt aaagtttcgc ctaagtgtta
     5581 taatttataa aatattgtaa ggttgaaagt aggtggaatg aggatgagta cattcaaagt
     5641 aggagatgta gtttctggga aagtcgcagg aattcaaagc tacggagcat ttgtagcgct
     5701 agataattcg acacaaggct tagttcatat ttcagaaatt acgcatggtt ttgtcaaaga
     5761 tatccatgat tttttagaag ttggccaaga agtcaaagtc aaaattctgg atattgacga
     5821 agaaaaaaat aaaatcagtc tttctattag agcgacagag gaagcaccaa aagaacaacc
     5881 aactaaaaag aaacaagttt catctagcga aaacgacgaa ggttttaaca ctttacgcga
     5941 taaactagaa gaatggatta aaaaagcaga caaataaaag tcccaatcag cttggtaata
     6001 tacccatttt gggataaatt gctaagctgg taaatttaat tgactaaaat tttagaaaaa
     6061 gggaatagtt agtagtaatt ttctatttat tcaatattat aaaatagtca aaagggggat
     6121 ttacgtgaaa agatctattc atgtgcaggc atttgtatat aacgaaaaga aagacgagat
     6181 actagtggtg agagatcgca atttgacatg ggcatttcca gggggacatg tggaaacaaa
     6241 ccaaacaatg gaagaagcac ttgcaagcaa agtgaaagag cagacaaata tcgatataga
     6301 aatagagtct atcctacact gcaaagagcg ccgtgctaca tgggagcatg tttgtacatt
     6361 cgtttttcga gcaaaacctg ttggtaatgc acttcttgct tccaatgatg acaatgtgtt
     6421 tcgagtgaag tggataccta tcccgctcgc agatgattta ttagctgtag accaattatc
     6481 attaaatgaa ctagtaagaa gcgaaggcgt cttgtatgaa aactatacct aaatttcaaa
     6541 aaggctcaaa tttcacaagg tcaagccttg ctaaaaagca ctgattgata taaagttaat
     6601 aaagaaactt ttttaaaatt tggagggaaa acaatgacac atattaaatt tgattattcc
     6661 aaagcgctcc gtttttttga agaacgcgaa cttgattatc ttgaaccagc agtaaaagca
     6721 gctcatgatt cattacataa tggtacaggt gctggtaatg atgcacttgg ttggattaac
     6781 ttaccaacag attacgacaa agaagaattt gctcgtatca aaaaagcaac agaaaaaatc
     6841 cacagcgact ccgacgtatt aatcgttatc ggtatcggtg gttcttatct tggggcacgt
     6901 gctgcaatcg aaactttaaa tcattccttc tataatgtac ttgaaaaagg tgctcgtaaa
     6961 acacctcaag tattctttgc aggaaatagc attagttcct cttacttaca tgacttaatt
     7021 gaagtagttg gcgaccgtga cttctctgtt aacgttattt ctaaatccgg aacaacaaca
     7081 gagccagcaa tcgctttccg tgttttcaaa gaacttttaa tcaaaaaata tggcgaagaa
     7141 ggcgcgaaaa aacgcattta cgctacaact gataaagcaa aaggcgctct aaaaacatta
     7201 gctgacaatg aaggctacga aacatttgtt gttccagatg acgttggcgg acgtttctct
     7261 gttttaactg cagtaggttt acttccaatc gcagttagtg gtgttgatat cgatgctctt
     7321 atgaatggag cagcagcagc aagcaaagat ttcgacaaac ctgaactaaa aaataacatt
     7381 gcataccaat acgcagcagc tcgtaacgtt ctttaccgta aaggcaaagt aacagaactt
     7441 ctaatcagct atgaaccagg cttacaatac tttaacgagt ggtggaaaca attattcggc
     7501 gaaagtgaag gtaaagacaa aaaaggtatt tacccatcca gcgcaaactt ctccactgac
     7561 ttgcactcta tcggtcaata tatccaagac ggccgtcgta acctttttga aacagttatc
     7621 aaagtggata aaccacgcca caacttaact atcaataaag aagaggtaga tctagatggc
     7681 ttaaattatc ttgctggcga aacagttgat ttcgttaaca caaaagcatt cgaaggaaca
     7741 cttctagcac atacagacgg cgaagttcca aactttgttg tagaagttcc agaactagat
     7801 gcatacactt tcggttacct agtatacttc tttgaaaaag cagtagctat cagcggctac
     7861 ctaaatggcg taaatccatt tgaccaacca ggcgtagaag catacaaagc caacatgttc
     7921 gcattacttg gcaaaccagg cttcgaagac aaaaaagcag aattagaaaa acgcttaaac
     7981 gattaatttt catttccaaa ccttggggcc aatcgctcca aggttttttg tttgtttgcg
     8041 attttcttcc attggagtta ccatatagtt aaacaaaagg aggggaagaa gtgctatcta
     8101 tcgaacgaaa acgcgccatc gtccaatatg tcaaaagccg aaaaatagca acagttagcg
     8161 aattagctaa acattttgaa gtccacgaag caaccattcg ccgcgattta acctctttag
     8221 aaaaagacaa aaagctaaaa agaacccacg gcggagttat gatagaagaa aaagtagttt
     8281 ccgaaccaaa ttggaaaaaa cgaagcgaag tgcgctacga agaaaaacaa cgcatcgcca
     8341 cattagcagc gacaatggtc aaagacggcg atacaatcat tcttgacgct ggaacaacaa
     8401 ccggacacat cgcaaccgca ttaaaagacc gatccaaact aaccgtcata acaaacgata
     8461 tcaacgtagc ttccattatg cgcttttccc cgtctaaagt aattgtgaca ggtggcgtca
     8521 tctacccaga aactttcatc cttaacggta tgattacgag cggaaccttg cagagcattc
     8581 acgtacataa agcatttgta accacaccgg cactcgatat cgacaaaggc ttaatgcact
     8641 acgacgaata cctaatccca gctaagcaac aaatgctcca ctcagccgat gaagtcatct
     8701 tagtaacaga ccacaccaag tttggccgca tttcacttta caaatacgca gccctagacg
     8761 aaatctcttc tattatcact ggaaaagaaa tagacccagt attaaaagaa caatttgaag
     8821 aaaaaggaat gcaaatttat acaacataat gttttaaaaa ctccatttaa tcaccaattt
     8881 atgcaccaaa ttcatctttt ttc
//
LOCUS       DABQVC010000115         8675 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.115,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000115 DABQVC010000000
VERSION     DABQVC010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8675
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.115"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(55..1563)
                     /locus_tag="IBJ56_001916"
     CDS             complement(55..1563)
                     /locus_tag="IBJ56_001916"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HAM3418167.1"
                     /translation="MAFYFEEPSRTFSEFLLVPGYSSAECVPTNVSLKTPIVKFKKGE
                     ESAITMNIPLVSAIMQAVSDDNMGIALATEGGVSFIFGSQSIESEAAMVSRVKNHKAG
                     FVISDSNISPDKTLQDILNLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRVTRMSPD
                     EKVADFMTPFEKLVTANKSTTLKEANNIIWDNKLNALPLVDDNEHLVHMVFRKDYDSN
                     KENKLELLDSSKRYVVGAGINTRDYEERVPALVEAGADILCIDSSEGYSEWQKRTLDY
                     VRGKYGDTVKVGAGNVVDRDGFRYLAEAGADFVKVGVGGGSICITREQKGIGRGQATA
                     LIDVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFSRFDESPT
                     NKVNLNGTYMKEYWGEGANRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAIS
                     LSKVRSTMCNCGALNIPELQQKAKITLVSSTSIVEGGAHDVVVKDASNNLIK"
     gene            1730..1963
                     /locus_tag="IBJ56_001917"
     CDS             1730..1963
                     /locus_tag="IBJ56_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418168.1"
                     /translation="MDEETLLERGYRKYRGAEVDIYFNTNICEHSGNCVKGNAELFNL
                     DRKPWIMPDNVSKEEAKRVIHTCPSGALQYIEK"
     gene            1975..2253
                     /locus_tag="IBJ56_001918"
     CDS             1975..2253
                     /locus_tag="IBJ56_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAM3418169.1"
                     /translation="MEYKNGENRIYAVNDEGVEVGEVTFVPTGEDMFIIDHTGVDDAA
                     RGQGIAQELVKRAVEKAKTEGKKIVPLCPFAKAEFAKKPEYQEVQAAK"
     regulatory      2390..2492
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            2579..4153
                     /locus_tag="IBJ56_001919"
     CDS             2579..4153
                     /locus_tag="IBJ56_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAM3418170.1"
                     /translation="MKKFLLVAVISVFALVLTACGGSGASSDKANGSGKAKDGGSLII
                     GVTGDPEVINPNYASDRVTLTIQQAVYAPLFWEVDGKPALAKSLDISDDNLTYTVKLK
                     DGLTWHDGKPLTADDVVFTVNSILDTKQNSPNRGNFVFDDKPVKVEAVDDTTVKFTLP
                     TVAPAFENTIKTFFPIPKHIFEGVENIEKSDKNKNPIGSGPYKFVEYKTGEYVSLERF
                     NDYFDGKPKLDKVTFRITKDQNAANLALQNGEINLKSIQPSDRNKVEKASAVNIITYP
                     ENRLSYATFNENQPALKSKELRQALSYALDREEIIDAAYGSDEYAKPASSFLTENTKY
                     FTDKVETYDQDIAKAKKLVKESGFDTSQKLTVYYLNNSKSQESIALYLQQQYKEIGVT
                     LDLKPTDPNALSNITLDRKNADYSIALNGYIMGNDPDAYKSLYLSDAPYNYSNYHNKD
                     LDALWEKGAVTADDKERQEIYEKIQNTIADDAVIYPISYDNAVLALDSRYGGQKAATP
                     QPVTMFRDLSKLYLTE"
     gene            4255..5205
                     /locus_tag="IBJ56_001920"
     CDS             4255..5205
                     /locus_tag="IBJ56_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418171.1"
                     /translation="MLKTIIKRVLQIIPMLFIISIISFALIKLAPGDPVNSFVTPDMN
                     PDDVERIRQSLGLDQPIYVQYFIWLGNLLQGNLGYSIVNSQPVLQQILERIPATLGLV
                     GTSLVLTLLLSIPLGLVAANYENTWIDKVLNGISYIGISIPIFWFGMILIDVFSIQLG
                     WLPSLGMRTIGVDSFWDMAEHAILPVITLTFQGCAAYYRYVRSNTINQLKEEYVLFGY
                     AKGLSKVQIMGHHVLKNSLLPVITLLGMSLPQVITGAFITESIFSWPGMGSLGINAIF
                     QLDYPVIMAITLFSALLLIIGNLLADLAYMIVDPRIREMG"
     gene            5216..6109
                     /locus_tag="IBJ56_001921"
     CDS             5216..6109
                     /locus_tag="IBJ56_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418172.1"
                     /translation="MRLDFSKKTMQDFERDAEVVHATRERSFWRFMLADRRAVFATSV
                     LILITVACIFAFLSPYDPNALSVQDKLMPPNSSHWFGTDDHGRDYLTRVLYGGRVSLL
                     VGVFAMMIAVVVGTLAGTVSGYFGGFIDNMVMRFLDIFMSIPSFFLLMILNAYLKPGI
                     SNIIIIIGLLSWMEVARIVRAETLTLKEREFILYSKSSGGGFFHIMFKHIIPNAMPSI
                     VVAASLNVATAILTESALSFLGLGVQQPNASWGSMLNNAQGYVGEATYLALFPGLLIL
                     MTILSFNVLGDVLRKGLSRRY"
     gene            6310..6594
                     /locus_tag="IBJ56_001922"
     CDS             6310..6594
                     /locus_tag="IBJ56_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 family protein"
                     /protein_id="HAM3418173.1"
                     /translation="MSEIKVKEATLKKHATKLESKGKSTEYLPMKGGNMAYSQANSIN
                     HFRTALFDLVDAVDNFQGVVGTDAKRLKELGVSFTRKDQELERGMGLGGK"
     gene            6595..6963
                     /locus_tag="IBJ56_001923"
     CDS             6595..6963
                     /locus_tag="IBJ56_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair Rad50 ATPase"
                     /protein_id="HAM3418174.1"
                     /translation="MDAKSQQMETQLQLLKKEQSAAEDFLQDLQRQQNEQEWLAEDFA
                     RVHQEERESLELLREVWQGAESRSFGYYLADLQEEEKQKWHKKIQANQEEHQQKITAC
                     QNNIYQLENQQQDLQKELLQ"
     gene            6960..8264
                     /locus_tag="IBJ56_001924"
     CDS             6960..8264
                     /locus_tag="IBJ56_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418175.1"
                     /translation="MSRIDIGEIQTFAHQLHTANEAGRKSIKDIKKAVKNYTEDGSLK
                     GKAIDASKNYYQMTYFPLCDAIIEAMNESEERLAQYIADFHAQVDGSADARIDADGLY
                     ELGKMIDRIEAKKEALAQRMNTGTEGQMQSYRSQLSIAYKQENILEKYLAFEQSHGGF
                     FDNLTDLVQGIQQTIRELQSNIQFNSKTGTYDMSKLNFTTVTRMQNALGKALKNNETT
                     FNFDEYQKTYRGQMWVLMKNGIVDVEATNAYNAAVLNGKLPHESNEAQEEAELLQAVI
                     QSVKEGIDPVTGQEISKAQGFGIISGLVFRYTAGGYKGKKFKVSKDWLHRRKKNNGVE
                     VGTDFGKIGKLVNHPNIKINWSEHSEHGMSRLKQRGLSKSQVDDFVERGKALSQNGGE
                     KFAFITENGVAIVSKDGKLVTAWGKKDFDEGMEKIIEKLYGK"
     gene            8274..8516
                     /locus_tag="IBJ56_001925"
     CDS             8274..8516
                     /locus_tag="IBJ56_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1871 family protein"
                     /protein_id="HAM3418176.1"
                     /translation="MYEKVEKIINDWDPIELFPLAPKDEYSQEINKIISIVQENHNID
                     MNVLAKGIRKIFIDSFGENLIFKNNEDEIAEKILAL"
BASE COUNT         2831 a         1559 c         1857 g         2428 t
ORIGIN      
        1 aattggttgg tgtgagaatg gtaatttacc aaattcacac caaccaattt tattttattt
       61 gattaaatta tttgaagcat cttttacaac cacgtcatgc gcgccgcctt ctacgataga
      121 agtggacgaa acaagggtga tttttgcttt ttgttgtaat tcagggatat tgagcgcgcc
      181 gcagttacac atagtagagc gtactttgct aaggctgatg gcaacattgt ctttcaaaga
      241 tccagcgtaa ggaacataag aatctacgcc ttcttcaaaa gataatttct tgtcgccgcc
      301 aaggtcataa cgttgccagt tgcgcgcgcg gttagctcct tcaccccaat attctttcat
      361 atacgtgccg tttaaattca ctttattagt aggactttcg tcaaaacgag agaaataacg
      421 accaagcatg ataaagtcag cgcccattgc tagagctagc gtcatgtggt agtcataaac
      481 aattccacca tcagaacaaa tcggaatata tacacctgtt tcttcaaaat attcatcgcg
      541 tgctttagcc acatcaatta gtgcagttgc ttgcccgcgt ccgatacctt tttgttcacg
      601 cgtgatacaa atggaaccac caccaacgcc aactttaacg aaatctgcgc cagcttctgc
      661 aagataacgg aaaccatcgc ggtcaacaac attccctgcg ccaactttga ccgtatcgcc
      721 gtatttaccg cgaacgtagt caagtgtgcg tttttgccat tcggagtaac cctcagagga
      781 atcgatacac agaatatctg cgccagcttc aactagagcg gggacacgtt cttcgtagtc
      841 gcgcgtgtta ataccagctc caacaacgta acgtttggag gaatcaagta gttctaattt
      901 attttcttta ttagagtcat agtctttgcg gaataccata tggactaggt gctcgttatc
      961 gtctacaagt ggtagggcat ttaatttgtt gtcccaaata atgttgttag cttcttttaa
     1021 agtggtcgat ttgttagcag taactaattt ttcgaaagga gtcatgaaat ctgctacttt
     1081 ttcatcaggg ctcatgcgcg ttacgcggta gtcgcgactt gtcacgattc caagtaattt
     1141 accgtgcgct gtgccgtctt ctgtaactgc tactgtagaa tgacccgttt tttcttttaa
     1201 attaaggatg tcttgaagtg ttttgtcagg gctgatgttg gaatcactaa taacgaaacc
     1261 agctttatga tttttcacgc gagaaaccat tgccgcttca ctttcgatgg actgggagcc
     1321 gaagatgaat gatacgccac cttctgtcgc aagcgcaatc cccatattat catcagaaac
     1381 agcttgcata attgcggaaa caagcggaat gttcattgtg atagcagatt cttccccttt
     1441 tttaaatttt acgattggtg tttttaagct aacatttgtt ggaacacatt cagcggatga
     1501 gtagcctggg acaagtaaaa attcactaaa tgtgcgggac ggttcttcaa aataaaatgc
     1561 cattatttcc actccttctt ctatttttaa atgaatttat aaaatatctt tattatttca
     1621 ataactggat ggaaagtcaa tgattggggg agctttttcg gacgttttct tttgggggaa
     1681 gagtggaata gatgaaaggt agagaaactt tggcgaagga ggtaatcaga tggacgaaga
     1741 aacattgcta gaacgtggct accggaagta tcgcggggcg gaggtagata tttattttaa
     1801 tacaaatatt tgcgagcatt cgggtaattg tgtaaaaggt aacgcagaac tttttaattt
     1861 ggatagaaaa ccatggatta tgccggataa tgtatcgaaa gaagaagcga aacgggtgat
     1921 tcatacttgc ccgagtggag cgcttcaata tatcgaaaaa taggaggata tcagatggaa
     1981 tataaaaacg gtgaaaatag aatttatgcg gtaaatgatg aaggagtcga ggttggtgaa
     2041 gtgacttttg tgccaactgg ggaagatatg tttattattg accatacagg cgttgatgat
     2101 gcggctcgag gtcaggggat agcgcaagaa cttgtgaaac gtgcggtcga aaaagcgaaa
     2161 acagaaggaa agaaaattgt tccgctttgt ccgtttgcga aagcagaatt tgctaagaag
     2221 ccggaatatc aagaagtaca agctgcaaaa taagaagtgt agactaggtt ttatgcctag
     2281 tctattttta taaaaaattt tagaattccg gttttctctt cttgacatct gctttgtttc
     2341 agtgtatctt taattcacag taaacttata ggaataatag tattacgttt tcttatcaag
     2401 agcggtggag ggaatcggcc cagtgaagcc cagcagcgga gcgcaagttc tatgctaatt
     2461 ccgatcagaa gtaatattct ggcagataag tagtagcttt taatgaggcg cttcgattct
     2521 gaccaaaaaa cagaggaagc gttatttttt agcgcttaaa gaggggagtt tttgttagat
     2581 gaagaaattt ttattagtag cggttatctc ggtttttgcc ttggtgttaa cagcttgcgg
     2641 aggctctggc gctagttcag acaaagcaaa tggttcaggc aaagcgaaag acggcggctc
     2701 tctaattatc ggcgttactg gggatccaga agttatcaat ccgaactacg cttctgaccg
     2761 tgtaacatta acgattcaac aagctgtata cgcaccgcta ttttgggaag ttgacgggaa
     2821 accggcactt gcaaaaagct tagatatttc agatgacaac ttaacttaca ctgtgaaact
     2881 aaaagatggt ttaacttggc acgacggcaa acctttaact gcagacgatg tagtatttac
     2941 tgtaaattct attttagata caaaacaaaa cagcccgaac cgcggcaact ttgtttttga
     3001 cgataaacct gtaaaagtag aagcagtaga cgacacaacg gtgaaattca ctttaccaac
     3061 tgttgctcca gcctttgaaa atacaattaa aactttcttc ccaattccaa aacacatttt
     3121 tgaaggggta gaaaacatcg agaaaagtga taaaaacaaa aatccaatcg gctcaggtcc
     3181 gtacaaattt gttgaataca aaacaggcga atatgtttcc ctagaaagat tcaacgacta
     3241 ttttgacggc aaaccaaaat tggataaagt tactttccga atcacaaaag accaaaacgc
     3301 agctaattta gcactgcaaa atggcgaaat caacctaaaa tccattcaac cttctgatag
     3361 aaacaaagta gaaaaagcga gcgcggtaaa cattatcact tacccggaaa atcgcttaag
     3421 ctatgcgaca ttcaacgaaa accaaccagc acttaaatca aaagaacttc gccaagccct
     3481 ttcttatgcg cttgatcgtg aagaaatcat tgatgcggct tacggttcag atgaatacgc
     3541 aaaaccagct tcctcgttcc taacagaaaa cacaaaatat ttcacggata aagtagaaac
     3601 atacgaccaa gacattgcca aagcgaaaaa attagtaaaa gaaagtggtt ttgatacaag
     3661 tcaaaaacta actgtttact atttaaacaa cagtaaatca caagaaagta tcgcgcttta
     3721 cttgcaacaa caatacaaag aaatcggtgt gacgcttgac ttgaaaccaa cagatccaaa
     3781 tgcactaagc aacatcacac ttgaccgcaa aaacgcagac tactctatcg cactaaatgg
     3841 ttatatcatg gggaacgatc ctgatgcgta taaatcccta tacctaagcg atgcgccata
     3901 taactattcg aactaccaca acaaagatct agatgcactt tgggaaaaag gtgctgtaac
     3961 tgcagacgat aaagaacgtc aagaaatcta tgaaaaaatc caaaacacca ttgctgatga
     4021 cgctgtaatt tatccaattt cttatgataa tgcagtgcta gctcttgata gccgttacgg
     4081 tggtcaaaaa gctgccacac cacaaccagt aaccatgttc cgtgatcttt ctaaactata
     4141 tttaacggaa taataattaa aaatcattcg taaaaaatct ggcctgccat gcttgttttt
     4201 ggcaggttca ggtttttact tgtcattttt agtgttttag ataggagata aattatgcta
     4261 aaaacaatca taaaacgcgt attgcaaatt attccgatgc tatttattat ctcgattatt
     4321 tcgtttgcac ttataaaatt agcgcccggg gatcccgtga attcttttgt tacgcctgat
     4381 atgaatcctg acgatgtgga acgaattaga caaagtttag gacttgatca accaatttat
     4441 gtgcagtact ttatttggct tggaaacttg ttgcaaggaa accttggtta ttcgattgtg
     4501 aatagccagc cagttttgca acaaatttta gagagaattc cggcgacact tggtttggtg
     4561 ggaacttcgc tcgttctgac tctattatta tcgattccac ttggtttagt tgcagcaaat
     4621 tatgaaaaca cgtggattga taaagtatta aacgggattt catatattgg gatttcgatt
     4681 ccgatttttt ggtttgggat gattttaata gatgtatttt cgattcagct aggttggctt
     4741 ccaagtctag ggatgcgaac gattggggtc gactcttttt gggatatggc ggagcatgcg
     4801 attttaccag ttataacgct gactttccaa gggtgtgcgg catattatcg ttacgtacgc
     4861 tcgaatacca tcaaccaatt aaaagaagaa tatgttttgt ttggttatgc gaaaggtcta
     4921 tccaaagtgc aaattatggg gcatcatgtc ttgaaaaatt ccttgctacc agttataaca
     4981 ctacttggga tgtcacttcc gcaagtcatt acaggcgctt ttattaccga aagtattttt
     5041 tcatggccgg gcatgggctc gcttggaatt aacgcgattt tccaattaga ttatccagtt
     5101 attatggcga ttacgctatt ttcagcgctg ttattaatta tcggaaactt gctggccgat
     5161 ttagcttata tgattgtcga tccgcggatt agggaaatgg ggtgaggagt tcatgatgcg
     5221 attagatttt tcgaaaaaaa caatgcaaga tttcgagcgg gatgcagaag ttgttcacgc
     5281 aacacgagag cgtagttttt ggcgttttat gcttgctgac cgccgagctg tttttgcgac
     5341 gagtgtgcta atacttatta cggtggcttg tattttcgcg ttcctttcgc cttatgaccc
     5401 taatgctctt tccgttcagg acaaactgat gccgccaaat tcgtcgcact ggtttgggac
     5461 ggatgaccat ggtcgggatt acttgacgcg tgtcttgtac ggtggccggg tttcactact
     5521 tgtcggtgta tttgcgatga tgattgccgt tgtcgttgga acgcttgctg ggacagttag
     5581 tggctacttt ggtggattca ttgacaatat ggtgatgcgt tttcttgata ttttcatgtc
     5641 gattccgtca tttttcctac taatgatttt aaatgcatac ttaaaaccgg gaatttcgaa
     5701 cattattatc attatcggat tgctttcttg gatggaagtg gcgcggatag ttcgagcgga
     5761 gacgttaaca ttaaaagaac gtgaattcat tttatactcc aagtcatcag gtggcggatt
     5821 tttccacatc atgttcaagc acattattcc aaatgcgatg ccatccatcg tcgttgcagc
     5881 ttcattaaac gtcgctacag ccattttaac cgagtcagca ctaagtttcc ttggcttagg
     5941 cgttcaacag cctaacgctt cgtggggcag catgctgaac aatgcgcaag gttacgtcgg
     6001 cgaagcaaca tacttggcgc ttttccctgg attactaatt ttaatgacca tcctttcatt
     6061 caacgtcctt ggcgatgtac tgagaaaagg gttatcacgt agatattaaa tgtaaaaaca
     6121 ctttgatttt ttcagtcaaa gtgttttttt gttttttaaa gaaaaggtac ttaaaataga
     6181 aacgtaaaaa acgtgtttta gccaatttcc aaggcataaa ttcacaaaac gctcacaaaa
     6241 cgagaatgcg tgcggtgcta taattaaaag ataaggtttc attattatag acagagatga
     6301 ggcgcagaaa tgagtgaaat aaaagttaaa gaagcaacat tgaaaaaaca cgcgacaaag
     6361 ttagaatcta aaggtaaatc aactgaatat ttaccgatga aaggtggcaa tatggcctat
     6421 agtcaagcca attccatcaa ccattttcga acagcattgt ttgacttggt agacgcggtg
     6481 gacaattttc aaggtgtggt aggaacggat gccaaaagat tgaaagaatt aggcgtatca
     6541 tttactcgca aagaccaaga gcttgaacga ggcatgggat tgggaggtaa ataaatggat
     6601 gcaaagagcc agcaaatgga gacacaactg caactgctga aaaaagaaca atccgcggcc
     6661 gaagattttt tgcaagattt acaacgacaa caaaatgaac aagagtggtt agcagaagat
     6721 tttgcacgtg tccatcaaga agaacgggag tcgctggagc ttctgcgcga agtttggcaa
     6781 ggcgcagaat caagaagttt cggctactat ttggcagatc tacaggaaga agaaaaacag
     6841 aagtggcata aaaaaatcca agcgaaccaa gaagaacacc aacaaaaaat caccgcttgc
     6901 caaaataaca tctaccaatt agaaaatcaa caacaagatt tacaaaagga gttgttacag
     6961 tgagccgaat tgacatcgga gaaatacaaa cctttgcgca ccaactacat acagccaatg
     7021 aagccggaag aaaaagcatt aaagacatca aaaaagccgt gaaaaactat accgaagacg
     7081 gcagtttaaa aggaaaagcg attgatgcat cgaaaaatta ctatcaaatg acctattttc
     7141 cattatgtga tgcgataatc gaagcaatga acgaaagcga agaacgatta gcgcaatata
     7201 tagctgattt ccacgcccaa gtggacggtt ctgctgatgc gagaattgat gcggacggct
     7261 tatacgaact cgggaaaatg attgatcgca tcgaagcgaa aaaagaagca ctagcccagc
     7321 gaatgaatac tggaacagaa gggcaaatgc aaagttaccg ttcccagctg agtatcgcct
     7381 acaaacaaga aaatatctta gaaaaatact tggcttttga acaaagtcat ggcggttttt
     7441 ttgataattt aaccgattta gtccaaggaa ttcagcaaac cattcgcgaa ctccagtcga
     7501 atattcagtt taacagtaaa acgggcacct atgatatgag caaattgaat ttcaccaccg
     7561 tgacccggat gcaaaacgcc ttaggaaaag cgctaaaaaa caacgaaaca acattcaatt
     7621 ttgacgaata tcaaaaaacg taccgcggtc aaatgtgggt gttaatgaaa aatggtatag
     7681 tagacgtaga agcaacgaac gcgtacaatg ccgccgtgct taacgggaaa ttaccacatg
     7741 aaagcaatga agcacaggaa gaagccgagt tgttgcaggc agtaattcaa tcggtgaaag
     7801 aaggaataga cccggttact gggcaagaga taagtaaagc gcaagggttt ggtattataa
     7861 gtggtcttgt tttccgctat actgctggag gttataaagg gaagaagttc aaggtttcta
     7921 aagattggtt acacagaaga aagaaaaata atggcgttga agttggaacg gactttggga
     7981 aaataggtaa attagttaat catcctaata ttaaaataaa ttggtctgaa cactccgaac
     8041 atggaatgtc tagattgaaa caacgtggtc tttctaagag tcaagttgac gattttgtgg
     8101 agcgtggaaa agctttatcc cagaatgggg gagaaaaatt tgcttttata actgaaaatg
     8161 gtgttgcaat tgtcagcaaa gatggcaaat tagttactgc ttggggtaaa aaagattttg
     8221 atgaaggaat ggaaaaaata atagaaaaat tgtatggaaa gtagggtgtc attatgtatg
     8281 aaaaagtaga aaaaataata aatgattggg atccaataga gctgtttccc ttagctccaa
     8341 aagatgaata tagtcaagaa atcaacaaaa taattagtat tgttcaagaa aatcataaca
     8401 ttgatatgaa tgtattagct aaaggtataa gaaaaatttt catagattcg tttggagaaa
     8461 atttaatatt taaaaataac gaagatgaaa tagctgaaaa aattttagcg ctataattaa
     8521 tgagggaaat aataagatgg aagaacaaga gataattgga aaaatagaaa gcttaccaaa
     8581 taattttagt gaaaatgaca gtatttatat atcacaagaa aacattaaaa atttggtttt
     8641 attttcaaaa gaaaatcaaa cagttttaga attgt
//
LOCUS       DABQVC010000116         8675 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.116,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000116 DABQVC010000000
VERSION     DABQVC010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8675
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.116"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..3381
                     /locus_tag="IBJ56_001926"
     CDS             <1..3381
                     /locus_tag="IBJ56_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418177.1"
                     /translation="WANSQERDGTDVEEITTKEKVTQETTSNETTSEPLKETTVNEAI
                     NTKSFPTGNYSGDFSINSQKDVIESGQTVNYNIYLKITGPNTTYQNAKLVINLPKNGE
                     FNQSLNELKIAGETPSYNKTTRQLVYTYQTLNSGVVDKVILKLTTKNGYTPNGTKLVV
                     TGELSADNLLGKVTEQAETTVNATATTALSNDFTRVENSINNNPSQGDIGIWSFNLNI
                     PKKSTGSLFMEEGKKIVIEYILADKLDYLGVAGDTPEPTKVEGQKLTWEIAAPTYLEQ
                     EKANSLLNKTFQIRTFFQTTIPNFATVENKAVATTNFVTLADSIVDTSKASVSVSASD
                     PATIPPTIGSVYAPAHRGPVDANWGIATVTGNPDIKAYDTAKLGFSLMLNSAMNDSPS
                     YDFLYYDAYYNIDDNLNLDYFQSGDFYFKPNVNYPGWAQLKKSPKYNLLVKYDGDSDW
                     TTLKEDVELSKMYSRKDLGIPDDKHVSKVWLHFTYAPAGMYAANLSFFTTVKEGYVGE
                     VRNSTQINMYGADSQGYIHYYDDTNPWPEAWKNYAGDRTAQIIPQPTGKNKFVQGSVA
                     FDDTDGNLINIGDNSISVNLESNKASISRLKGPFEAVVLLPSGVKMKKTEQNDFNVTV
                     LNENYQNAGRQLLKVKWDKKTLLPAEKLTAKINVSVAKDTPSNMTVEMFGFLQETDFN
                     VPEVTGTPTISDTKMEIDSDDINQNGNSEESRITSGNHYILNTSNHLKISKKAKGNRD
                     KEYSGLANATTNSIVSYQLSLENDSDEKIANMVLMDVLPSENDLGITDNSERGSKFNL
                     ELTKAVAIPNEWKDKVDVKYSTAKNPKRAGVLDKHTIYPTGSEPLVDNAEATEADWLT
                     ASEVQDWSKIYSFKMELKEGIEWIPGKSMKIQFDLKTPKKNQIDKGFLNQQTKKEDRA
                     AWNSFAVAVNNSQVIEPAQVGVALDDSVAPVTVQYVDQNHKQIASPETLTGAYGEKFT
                     AKQKKITNYTLVKTPANVSGTFNEKAQTVTFVYQKVTAGNIIVDYVDKNGEKLADSIV
                     LTGKLNSSYRTSAKKISGYKLYQTPKNASGKFLNSSQKVTYVYEKTSALSVSSNERAG
                     NVKKSEKLPQTGDSKKTNLWFILGMLLLSSAFVLAKKR"
     gene            3562..>8675
                     /locus_tag="IBJ56_001927"
     CDS             3562..>8675
                     /locus_tag="IBJ56_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418178.1"
                     /translation="MKNIRHWKKLVIAMVIGLLVFQNVSPVLATMTDDETAKTTLKIT
                     KEDKDTKEKINGSTFEIKNKETGETNDLTISANGEATMDSLSPGDYLVKEKVAPKGYT
                     LDEKEYSVTLAEKEEVITSVSAKVQEETTKEATTPTPVKKATQNANLKAAITDNIFNK
                     VTLKDGNGDEINTSDRIQNGSGVVLNMNFAFSGKNYKAGDTFTTVLPDAFNFGNKNLS
                     GNFLPSTEAEWTLDVTTRELTITFLKDGIQEGDYDVNISTAFKVFTSTEETIQEVVFK
                     TAGKDTVYQIEVVPVVNYPTTVGITANPGVVNPTKGQVDAKFNLTKEKDAKGELKLND
                     YASGGTTTIDKDTIKVYSSDVSAGGTFIGTKKLLVEGTDYTLTYSATSLTVTLNGGLA
                     GKGYQVTYDRTINKPSDSLSYMSTQAYTVGDSGTLSSNSAYVYLTMTNYKHIEKKATY
                     NGSTQSIDWKINFNFDQDEISPSTVLTDVLADNDVEYVADSLKIKRVTFNATNGSPIV
                     GGDASSDWTTSAISANGNFNLTYKNTNTNAYEITYSTKITDFSDRKIKNEITDENGVS
                     ADATIAIQPDLLKKEAGTIDYFNNTMTWKITANSDRIKMGNLNITDEFSTGVKALKSY
                     TVRAYTDNINSVLLTEGKDYTIDKDVTPAGFYIQLIGDYATTDKKIVVDFVTEIDLSD
                     VTKTIDNKASISYYDGGIIKYVDDVKASMTPDPAMMTNGGKYGSYNSTTGNIDWIVSV
                     NAMAKNYDNLIFDDAIPTGLTYVEGSLQYRNVASTSEMMNLYIPLNSVGTVAKTGDKN
                     YPTKVDTTGNKLHLEFANLENSRVFIKYSTKPNENWYFYSYVQNTAKVSDNGVGEKSY
                     SYQAYASKLYNAMTKTATIDPSFDNKVNWVVTLNNISADRPINNPTITDTMKTGTTGA
                     QVVKSSFKVINETTGEDIDSKYYDITYTDNNFTIQFKDYKATAPIKVTYSTISLMSGL
                     VSNTATTASPDYGSLPMTYKSRTTSISPAFTIGSGSGTATIGSLEITKVDKKDNTKKL
                     AGAKFQLYTLEGDKAGQEATTDTDGKIVMDGLQSGKYKLVETEAPTGYTISDEYKDGK
                     EITVTADAVTNVTIENTEQTGSAVLLKEDSVTKDAIAGAEFELQNADGTKVAENLVSN
                     ADGKIEVTDLAPGDYQFVETKAPTGYVLDATPSEFTIEFNQEAAVIVTKENTAKTGSV
                     VLTKEDSVTKATIAGAEFDLQKADGTKVSENLVTDADGKIEANDLAPGDYQFVETKAA
                     AGYVLDATPSEFTIEFNQDKAAVVTKENTAKSGSVVLTKQDSATKAALSDAEFELQTA
                     TGTKVKDNLTTNASGEIEVADLAPGDYKFIETKAPTGYELDATPVTFTIEFNQSTAVK
                     VTKENVAKTGSVVLTKLDSKSRSNLAGAEFELQTKLGVSLKDKVVTEANGQLQIDNLA
                     PGDYQLVETKAPTGYELDATPVEFTIEFNQKDAVQVTKTNKMSTGSVVLTKTDGQTKA
                     PLADATFKLVDADNNVTENLTTDASGKLEITNLAPGDYQLIETKAPKGYELDTVPVDV
                     KISFNQNQVLQVTKTNIKTVVSGKVIAEFVDTKGNVLAEQEIHAGLVGEKYVTKAKSI
                     AGYKLTKDPTNKVGIYKEADQKVTFVYEKNKSPLVVDPTKPIKPSKPTKPSANPSKQA
                     TVKKAQSLPSTGDNSLANLIITGLFASTLGLFLLRKS"
BASE COUNT         3306 a         1497 c         1676 g         2196 t
ORIGIN      
        1 tgggcaaata gtcaagaaag ggatggaacg gacgtagaag aaataactac gaaagaaaag
       61 gttacgcagg aaacgacttc aaatgaaact acttcagagc ctttaaaaga gaccacagtc
      121 aatgaagcaa taaacacaaa atcatttcca actgggaatt attcagggga ctttagtatt
      181 aattctcaaa aagatgtgat tgaatctggt cagacggtaa actataacat ttatttaaaa
      241 attactggac caaacacaac ataccaaaat gctaaattag taatcaattt accaaaaaac
      301 ggggaattta atcaatcatt aaatgaactt aagattgcgg gagaaacgcc aagttataac
      361 aaaacaactc gtcagctcgt ttacacatat caaacactga acagtggtgt tgttgataaa
      421 gtgattctta agctgactac gaaaaatggc tacacaccaa atggaacgaa attagtagta
      481 acaggtgaat taagtgcaga taatttactt ggaaaagtaa ccgaacaggc tgaaacaact
      541 gtcaacgcaa cagccacaac agctttatca aatgatttta ctagggtaga aaatagcatc
      601 aataataatc cgagtcaagg tgatatcggg atttggtctt tcaacctaaa tattccgaaa
      661 aagtctacag gaagcctttt tatggaagaa ggtaagaaga ttgttattga gtatatattg
      721 gcagataagc tagattactt aggtgtagca ggagatacac cagaaccaac gaaggtcgaa
      781 ggacaaaaac taacttggga aattgcagca cctacatatt tggaacaaga aaaagcaaac
      841 agtttactta acaagacttt ccaaattaga acgttcttcc aaactactat accaaatttt
      901 gcaacggtgg aaaataaagc tgttgcaaca acgaactttg ttactttggc tgatagcatt
      961 gtagatacat ccaaagcatc tgtttcagtt tcagcaagtg acccagcgac aatcccgcca
     1021 actattggaa gtgtttatgc tccagcacac agaggcccgg tggatgcgaa ttggggaatc
     1081 gctactgtga ccggaaatcc tgatataaaa gcatatgata ctgctaaatt aggctttagt
     1141 ttgatgttaa attcggcgat gaatgattca ccttcgtacg acttccttta ttatgatgct
     1201 tactacaata tagatgataa tttaaatttg gattacttcc agagcggcga tttttacttt
     1261 aaaccaaatg ttaattaccc tggttgggcg caactaaaga aatcacctaa gtataattta
     1321 ctcgtgaaat atgatggtga tagcgactgg acgacactaa aagaagatgt agaactgagc
     1381 aaaatgtatt cgagaaaaga tcttgggatt ccagatgata agcacgtgag taaagtatgg
     1441 cttcatttca cgtatgctcc agctggaatg tatgctgcta atctatcttt ctttacaaca
     1501 gtcaaagaag gttatgtagg tgaggttaga aatagtacac aaatcaacat gtacggagcg
     1561 gatagtcaag gctatatcca ttattatgac gatacaaatc cttggccgga agcttggaaa
     1621 aattatgcag gagaccgaac agcgcaaata attccgcaac ctactggtaa aaataaattt
     1681 gtacaaggat cagttgcgtt tgatgatacc gatgggaatt taatcaacat aggtgataat
     1741 tctatttctg ttaatttaga aagcaataaa gcttctattt cacgattaaa aggtcctttt
     1801 gaagcagtgg ttttgttacc ttcaggggtc aaaatgaaaa aaacggagca aaatgacttt
     1861 aatgtaacag tgttgaacga gaattaccaa aacgcagggc gtcaattact aaaagtcaaa
     1921 tgggataaaa agacgctttt accagcagaa aaattaacgg caaaaattaa tgtgagtgtt
     1981 gcaaaagaca cacctagtaa tatgactgtt gagatgtttg gtttcttgca ggagacagat
     2041 tttaatgtgc cggaagtgac tggaactcca accatttctg atacaaaaat ggaaattgac
     2101 tcagatgaca ttaatcaaaa tgggaattcg gaagagtcta gaatcacatc gggaaaccat
     2161 tacattttaa atacgagtaa tcatttgaaa attagtaaaa aagctaaggg taatcgcgat
     2221 aaagaataca gcggattggc aaatgccaca acaaattcca ttgtttcata tcaattgtca
     2281 ctggaaaatg attcagatga aaaaatagct aatatggttt taatggatgt tttaccaagt
     2341 gaaaatgatt taggaattac agataacagc gaacgtggta gtaaattcaa cttggagcta
     2401 acgaaagcag tggcaattcc aaatgaatgg aaagataagg ttgacgtaaa atatagtact
     2461 gccaaaaacc ctaaacgtgc gggcgttctt gataagcaca cgatttatcc aactggttca
     2521 gagcctctag ttgataacgc agaagcaacg gaagcagatt ggttaaccgc atcagaagta
     2581 caagattggt ccaaaattta ctcttttaaa atggaattaa aagaaggtat tgagtggatt
     2641 cctgggaaat ccatgaaaat tcaatttgat ttaaaaacac caaagaaaaa ccaaatagat
     2701 aagggatttt taaatcagca aacaaaaaaa gaagaccgag cagcatggaa ttcatttgct
     2761 gtggctgtaa ataattctca agtaattgag ccggcccaag taggagtggc tttagatgat
     2821 agtgttgcgc cagttacggt gcaatatgtt gatcaaaacc ataaacaaat tgccagccca
     2881 gaaacattaa caggagctta cggagaaaaa ttcactgcaa aacagaaaaa aattactaac
     2941 tacacccttg taaaaacacc cgcgaatgta agtggaacat ttaacgaaaa agcacagaca
     3001 gttacttttg tttatcaaaa agtgacagcc ggaaacatca ttgtcgatta tgtcgataag
     3061 aatggtgaaa aattagctga ttcgattgtt ttaacaggaa aattaaattc aagttatcga
     3121 acttcggcca aaaaaatctc gggatataaa ttgtatcaaa cacctaaaaa tgcatcgggg
     3181 aaatttttga atagctcaca aaaagtaact tatgtgtatg aaaaaactag cgctttatca
     3241 gtttcttcta atgaaagagc tggaaatgtg aaaaaatcgg aaaaactgcc acaaacggga
     3301 gattctaaga aaactaattt atggtttatt cttggaatgc tcttactttc aagtgctttt
     3361 gtacttgcaa agaaaagatg atattaaaag tattttaaaa ggtgtttaaa gtgtttccaa
     3421 ttcattttgc ttattaaaaa gacacatatt actttggatt tcgcaaaaag taattattgg
     3481 gtgcatttat ttgtcaaaac tcaacaaatc ttttagggat ttaacaacag ttagaaatag
     3541 attataggag gacaaaacaa agtgaaaaat atcagacact ggaagaagct agttattgca
     3601 atggttatcg gattactagt attccaaaac gtttcacctg tactagctac aatgacagac
     3661 gatgaaacgg caaaaacaac attaaaaatc accaaagaag ataaagatac aaaagaaaaa
     3721 atcaatggtt ctacctttga gataaagaat aaagaaacgg gcgaaacaaa cgatttaaca
     3781 atcagcgcga atggtgaagc gactatggat tcactttcac ctggtgacta tcttgttaaa
     3841 gaaaaagttg cgccaaaagg ttacacacta gatgaaaaag aatatagtgt aactttagca
     3901 gaaaaagaag aagtgattac ttcggtttca gcaaaagtgc aagaagaaac aacaaaagaa
     3961 gcaacaacac caacaccggt taaaaaagca acacaaaatg caaatctaaa agctgctatt
     4021 acagacaata tttttaacaa agtaacgcta aaagatggta atggcgatga aatcaacact
     4081 tcagaccgaa ttcaaaatgg tagcggtgtt gtgcttaaca tgaactttgc gttttctggg
     4141 aaaaattata aagcgggaga tacgtttaca actgttttac cagatgcttt caactttggg
     4201 aacaaaaatt taagtggtaa cttcttacca tctacagaag cagaatggac gcttgacgtt
     4261 acaacgcgtg aacttacgat tactttctta aaagatggca ttcaagaagg cgattatgat
     4321 gtgaatatca gtacagcctt caaagtgttt acctcaacag aagaaacgat acaggaagtt
     4381 gttttcaaga cagctgggaa agatactgtt tatcaaatcg aagttgtacc agtagttaac
     4441 tacccaacaa ctgtaggaat tacggcgaat ccaggggtag taaatccgac aaaaggtcaa
     4501 gtagatgcca agttcaactt aacaaaagaa aaagatgcta agggtgagct gaaacttaat
     4561 gattatgctt ccggtggaac aacaactatt gataaagata ccatcaaagt atattcgagt
     4621 gatgttagtg ctgggggaac cttcataggt acgaaaaaat tacttgtaga aggcacagat
     4681 tatacgctaa cttattccgc aacttctcta actgttacgt taaacggtgg gcttgctggg
     4741 aaaggctacc aagtaacata tgaccgcaca atcaataaac caagtgattc actttcttat
     4801 atgtctacac aagcttatac agtaggcgat tcaggaacat tatcaagcaa ctccgcttat
     4861 gtttacctga caatgacaaa ttataagcat atcgagaaaa aagctactta caacggctca
     4921 acacaaagta ttgattggaa aattaacttt aactttgatc aagacgaaat atctccttca
     4981 acagtgctta ccgatgtttt agcggataat gatgtcgaat atgtagcaga ttcacttaaa
     5041 attaaacgag taacttttaa cgcaacgaat ggatcgccaa tcgttggagg tgacgcttca
     5101 agtgattgga caacttcagc aatctcggca aatgggaatt ttaatttaac gtataaaaac
     5161 acaaacacaa acgcatatga aatcacttat tccacgaaaa tcacggactt tagtgatcgt
     5221 aaaattaaaa atgaaattac agatgaaaat ggtgtttccg ctgacgcaac gatcgcgatt
     5281 caaccagatt tactgaaaaa agaagctgga acaattgact attttaataa cacgatgaca
     5341 tggaaaatca ctgccaactc tgacagaatt aagatgggga atcttaatat cacagatgaa
     5401 ttttctactg gtgtaaaagc ccttaagagc tacactgttc gtgcctatac agataatatc
     5461 aatagcgtct tattaacaga aggcaaagat tatacgattg ataaagatgt gacaccagct
     5521 ggtttttata tccaacttat cggcgattat gctacaacag acaaaaaaat tgtagttgat
     5581 ttcgtcacag aaattgacct ttctgatgta acaaaaacga ttgataataa agcatccatt
     5641 tcttattacg atggcggaat tatcaagtat gttgatgatg taaaagcttc catgacacca
     5701 gacccagcta tgatgacaaa tggtggtaaa tacggatcgt acaactctac tacggggaat
     5761 atcgattgga ttgtatctgt aaatgctatg gcgaaaaact atgacaactt aatttttgat
     5821 gatgctattc caactggatt aacatacgta gaaggctcac tacaatatcg taatgtagct
     5881 tccacaagtg agatgatgaa tttatacatc ccgcttaact ctgttggaac agtagctaaa
     5941 acaggtgata aaaactaccc aacaaaagtc gatactactg ggaataaact acatttagaa
     6001 ttcgctaact tggagaattc acgcgtattt attaaataca gtaccaaacc aaacgaaaac
     6061 tggtatttct actcctacgt acaaaacact gcgaaggtga gcgataatgg agtaggcgaa
     6121 aaatcttaca gttaccaagc atacgcaagc aaactttata atgcgatgac aaaaacggct
     6181 actattgatc catcttttga taataaagtt aactgggttg ttacactgaa caatatctct
     6241 gcagatcgtc ctattaacaa tccaacaatt acagacacaa tgaaaacagg aacaacagga
     6301 gcgcaagtag taaaaagtag ctttaaagta atcaatgaaa cgacgggtga agatattgac
     6361 tcaaaatatt atgacatcac ttacacagac aataatttca ctatccagtt caaagactat
     6421 aaagcaactg caccaattaa agtaacctat agtacaatca gcttgatgtc tgggcttgtt
     6481 agtaacacag cgacaactgc ttctcctgac tacggtagtt taccaatgac atataaatca
     6541 agaacaacaa gcatatcgcc agccttcact attggtagtg gtagcgggac ggcaacaatt
     6601 ggttcacttg aaattaccaa agtggataaa aaggataata cgaaaaaact agcaggagct
     6661 aaattccaac tttatacgct tgaaggtgat aaagcgggac aagaggctac cactgataca
     6721 gatggtaaaa tcgtgatgga tggccttcaa tctgggaaat ataaactagt tgagacagaa
     6781 gcgccaacag gttacacaat tagtgatgaa tataaagacg gtaaagaaat cacggttacg
     6841 gccgatgcag ttacaaacgt tacaattgaa aacacagagc aaactggtag cgcggttctt
     6901 ttaaaagaag atagtgtaac gaaagacgct atcgcaggag cagaattcga attacaaaat
     6961 gcagacggta caaaagtcgc tgaaaactta gtgtctaatg cagatggtaa aatcgaagta
     7021 actgacttag cgccaggcga ttaccaattt gtagaaacaa aagcgccaac tggctatgta
     7081 ttagatgcaa cgccaagcga attcacgatt gaatttaacc aagaagccgc tgtaattgtt
     7141 acaaaagaaa acacagcgaa aactggtagt gtggttctaa cgaaagaaga tagtgtaacg
     7201 aaagctacga tagccggagc ggaattcgat ttacaaaaag cagacggaac aaaagtatcc
     7261 gaaaacttag taacagacgc agacggtaaa atcgaagcaa acgatttagc accaggagac
     7321 taccaatttg tagaaacgaa agctgcggct ggctatgtat tagatgcaac gccaagcgaa
     7381 ttcacgattg aatttaacca agacaaagca gctgtcgtaa caaaagaaaa cacagcaaaa
     7441 tctggcagcg tagttctaac aaaacaagat agtgcaacaa aagctgcgtt atctgatgcg
     7501 gaatttgaac tacaaactgc cactggaact aaagtaaaag ataatttaac aacgaatgca
     7561 agtggtgaga tagaagtagc tgatttagca ccaggcgatt acaagttcat tgaaaccaaa
     7621 gcaccaacag gctacgaatt agatgccaca ccggttactt ttaccatcga atttaaccaa
     7681 tcgactgcag tcaaagtaac aaaagaaaat gttgcgaaaa ctggtagtgt ggtcttaact
     7741 aagctagata gtaaatcaag aagtaattta gctggtgcag agttcgaatt acaaacaaaa
     7801 cttggtgtca gtttgaaaga taaagtagtg acagaagcaa acggtcaact gcaaattgat
     7861 aacttagcac caggcgacta ccaattagta gaaacgaaag ctccaacagg ttatgagctt
     7921 gatgcaacac cagttgaatt caccattgaa tttaaccaaa aagatgcagt tcaagtgact
     7981 aaaacaaata aaatgtctac tggatctgtt gtgttaacta agactgatgg gcaaacaaaa
     8041 gcccctcttg cagatgcaac gtttaaatta gtagacgcag ataataacgt cacagaaaat
     8101 ctaacaacag atgcttctgg taaactggaa ataactaatc tagcccctgg tgattatcaa
     8161 ttaattgaaa cgaaagcacc aaaaggttat gaattagata ccgttccagt cgatgtgaaa
     8221 atcagtttta atcaaaatca agtgcttcaa gtaactaaaa caaatattaa aacagttgta
     8281 agcggcaagg taatagctga atttgttgat acaaaaggaa atgtattagc agaacaagag
     8341 attcatgcag gtttagtcgg ggagaaatat gtaactaaag cgaaatctat cgcgggttat
     8401 aaactaacga aagaccctac gaataaagtc ggcatataca aagaagcaga tcaaaaagta
     8461 acctttgtat atgagaaaaa taaatcacca ctcgttgtcg accctactaa accaattaaa
     8521 ccttctaaac caacaaaacc atcagcaaac ccttcaaaac aagccacagt gaaaaaagca
     8581 caaagtcttc cttcaacagg agataattcc ctagctaatc taatcattac cggattattc
     8641 gctagtacac taggactttt cttactaaga aaatc
//
LOCUS       DABQVC010000117         8647 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.117,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000117 DABQVC010000000
VERSION     DABQVC010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8647
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.117"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..851
                     /gene="pfkB"
                     /locus_tag="IBJ56_001928"
     CDS             <1..851
                     /gene="pfkB"
                     /locus_tag="IBJ56_001928"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HAM3418179.1"
                     /translation="NRMKQDYKLPGGKGINVSRVLNQLNVPSLATGFLGGFTGNFIKD
                     WLQNEGVKTGFVTVKDDTRINIKLKHGEETEINGLGPAISEKEINGFLKVMDKVTAND
                     IVILSGSVPPSLGNDFYNKIIQICKEKKAEFMIDTTGQELLDALPNHPILIKPNHHEL
                     ADLFGVKLGSVEELIPYGKKCLELGAQHVIVSMAGDGALLFTGEDVYFADALKGELKN
                     SVGAGDSMIAGFVGTFDKTRDPVKAFAAGVATGGATAFSTDLAQKELIDELLPQVKIT
                     KITGRN"
     gene            853..2751
                     /locus_tag="IBJ56_001929"
     CDS             853..2751
                     /locus_tag="IBJ56_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIA"
                     /protein_id="HAM3418180.1"
                     /translation="MRITDLLSKDVMIMSLQATTKEAAIDEMIASLKSNGKINDEVLF
                     KEAIMNREAQSSTGVGEGIAMPHAKTKAVNEPTVVFAKSEKGLDYDALDGQPAHLFFM
                     IAAPDGANATHLETLAALSRLLVHPAFVQSLRDAKTPEEVINLFNNEQEDAEETVVAP
                     TSTNETGKSVVAVTACPTGIAHTYMAAEKLQETANKLGVRIKVETNGSRGVENRLTDK
                     EIAEADGVIIAADVQVDMPRFDGKHLIAKPVAAGIHKPEELIKEAISGNAPIYKAEEG
                     SQATESADGLSIGQQIYKHLMSGVSHMLPFVIGGGIAIAIAFMLDQMLGVPQDQLAKL
                     GSYNEIPALLKQIGDVAFGFMLPVFAGYIAYSISDRPGLVAGFVAGGVASVGGAGFLG
                     ALVGGFLAGYAVELIKLALKKLPKTLDGIKVVLFYPVLSVLIVGLLMLLLNVPMSALN
                     TWLNDFLNSLSGTNAVILGLLLGAMMAADLGGPINKAAYIFATGTLAASVATGGSAIM
                     AATMAAGMVPPLATFVATLIFRNKFTAQERDAGLTNSILGASFITEGAIPFAAADPLR
                     MIPSFIAGSAITGAVVMFLNIKVLAPHGGVFVIFLVSQPWFYIIAIIIGTLISAGLIG
                     VLRKKPTV"
     gene            2857..3204
                     /locus_tag="IBJ56_001930"
     CDS             2857..3204
                     /locus_tag="IBJ56_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3418181.1"
                     /translation="MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPI
                     FILAKLAEILGTTTDFLLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSEDELL
                     MLKRIADAIENKK"
     gene            complement(3259..3867)
                     /locus_tag="IBJ56_001931"
     CDS             complement(3259..3867)
                     /locus_tag="IBJ56_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein"
                     /protein_id="HAM3418182.1"
                     /translation="MKKEQISTQFYEVNPHTMIIFPKKSGSIVYSEIYEVDSHYTSKF
                     TPFELIKTSCNFFGSSYEGRKEGTKHLIGVTHKPPIIIDPVTSTYVFPTVAPSSTECI
                     WIFPQHIKDYHAIGFNHTLITFSNMETFEIDMSLASFNNQIARTSMLHMKFSQKMRIM
                     ESNFPSMNRFFPPTTLAAEPRRYYSTMLPNNEDPNEPQDPEQ"
     gene            3998..4354
                     /locus_tag="IBJ56_001932"
     CDS             3998..4354
                     /locus_tag="IBJ56_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465793.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IDEAL domain-containing protein"
                     /protein_id="HAM3418183.1"
                     /translation="MVICKSLDFGKVVFSSCFLFFLSILQFFKIVINMSEGVVVVEMR
                     DFSNSLMNQVGVLKGEKELTNVFIECFLTMLLEERKLEQLRAEIDKALDNRNKAEFMK
                     LTEKMNKIQQEMLAFD"
     gene            4504..7977
                     /gene="addB"
                     /locus_tag="IBJ56_001933"
     CDS             4504..7977
                     /gene="addB"
                     /locus_tag="IBJ56_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddB"
                     /protein_id="HAM3418184.1"
                     /translation="MTLQIIAGRSGTGKTTYLMDEVSVKIKQNSKTYIFIVPDQMTFQ
                     METSFLNKENLEGMLGTQIFSFSRLAWKILQETGGLSKTFLSQTGIEMVIRKAALDQR
                     DKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVKSATNLSTSVNNKIHDISIIY
                     QKYEELLADKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIGALMRK
                     CDKVTVSLALNVPEIKHGLDEYSMFKASTEAYYALLELAKLNGINVEEDKFFLENKRA
                     KTESLAFLANAWGHNKFMAFKEEPHNLSVHQANNRRAEIEGVAREIRQLTLNGYRYQD
                     MAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKHPFIEFIRSSLDAILFNWKYEP
                     IFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST
                     NVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGMEFALALYHFLEQVNAVE
                     RLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEETLDLNSFVEIIATGLD
                     ALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQKDNGILSDQDRDAL
                     RAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKG
                     QFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPLSSVWWDAYN
                     SYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKFFSCEFQH
                     FAQYGLKLEERGHFQLQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQECRQMAKLA
                     MTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLK
                     GDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYYGLA
                     LQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSKM
                     KGLILSDPVAVSLMDTTLEKGKSSNIVPAEIKQNGELSARSKTATREEFDKMRHFVRH
                     KYQEAGNKILDGAVSINPYKLKERTPCQFCGFRSFCGFDPSLASNQYRHLTNEKTETI
                     LAKMDIEGGEQ"
     gene            7979..>8647
                     /locus_tag="IBJ56_001934"
     CDS             7979..>8647
                     /locus_tag="IBJ56_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HAM3418185.1"
                     /translation="MGLNIPPKPESSLWTDDQWKAIQAEGNNVLVAAAAGSGKTAVLV
                     TRIIEKLINESANLNVDELLIVTFTNASAAEMKFRIGKGLEEALAQNPDSTHLKRQVA
                     LLNYASISTLHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIE
                     NNEPFFHLVESFTGDRSDAELHALISKLYDFSRANPDPNIWLEEMVDFYNTEETTSIT
                     ELPYF"
BASE COUNT         2996 a         1305 c         1777 g         2569 t
ORIGIN      
        1 ttaatcgcat gaagcaagat tataaactac ctggtggcaa aggaattaat gtcagcagag
       61 ttttaaatca attaaatgta ccaagtcttg ctacaggatt tttaggtgga tttacaggca
      121 attttatcaa agactggcta caaaacgaag gtgtgaaaac tggctttgta acagtgaaag
      181 atgacactcg tattaatatc aaactaaaac acggagaaga aacagaaatt aatggtctag
      241 ggccagctat ttctgaaaaa gaaatcaatg gatttttgaa agtgatggat aaagtaactg
      301 ctaacgatat tgttatttta tctggtagtg tgcctccttc acttggaaat gatttttaca
      361 ataaaataat tcaaatttgc aaagaaaaaa aagctgaatt tatgattgat acaactggtc
      421 aagaactgct agatgcatta ccaaaccacc cgattctaat taaaccaaat caccacgaac
      481 tagcagacct atttggcgtg aaacttggta gcgtagaaga acttatccca tacgggaaaa
      541 aatgtttaga attaggcgcg caacatgtaa tcgtgtccat ggctggtgac ggagcgcttc
      601 tatttacagg agaagatgtt tacttcgccg atgcattaaa aggggaactg aaaaattccg
      661 taggtgctgg agactcaatg attgcaggct ttgttgggac ttttgataaa acgagagatc
      721 ccgttaaagc ttttgctgca ggagttgcaa caggtggagc tactgcattt tcaacagatt
      781 tagcccaaaa agaactaata gatgaactat taccgcaagt gaagataacc aaaataacag
      841 ggaggaacta aaatgagaat cactgattta ttaagcaaag atgttatgat tatgtcatta
      901 caggcaacga caaaagaagc tgccatcgat gaaatgattg cttcgttaaa gagcaacggg
      961 aaaattaatg atgaggtgct gtttaaagaa gctataatga accgtgaagc acagagttct
     1021 actggtgtag gtgaaggaat tgcaatgcct cacgcgaaaa caaaagcagt aaatgaacca
     1081 actgttgttt ttgctaagag tgaaaaagga ttggattatg atgctttaga tggtcagcca
     1141 gcacacttat tctttatgat tgctgctcca gatggcgcta atgcaactca tttagaaact
     1201 ttagcagctc tttctagatt attggttcat ccagcgtttg tgcaatcgtt aagagatgct
     1261 aaaactccag aggaagtaat caatttattc aacaatgaac aagaagacgc agaagaaaca
     1321 gtcgttgctc caacctcaac caatgaaact ggtaaatcag tcgtagcagt tacagcatgt
     1381 ccaacaggaa ttgcacatac ttatatggct gcagaaaaat tacaagaaac tgctaataaa
     1441 ttaggtgtac gaatcaaagt tgagacaaat ggctctagag gcgttgaaaa ccgtttaaca
     1501 gataaagaaa ttgcagaagc tgatggagtt attattgcag ctgacgtaca agtagatatg
     1561 cctcgttttg acgggaagca tttaattgct aaaccagttg cagcgggaat tcataaacca
     1621 gaagaactaa ttaaagaagc aatttcaggc aatgctccaa tttataaagc agaggaaggt
     1681 agtcaagcta cggagagcgc agacggactt tctatcggtc aacaaattta taaacattta
     1741 atgagcggtg tttctcacat gttgccgttt gtaattggtg gaggtatcgc tatcgccatc
     1801 gcgtttatgc ttgatcaaat gttaggtgtt cctcaagatc aactcgcaaa acttggttca
     1861 tataacgaaa tcccagcact attaaaacaa atcggtgatg ttgcattcgg cttcatgctt
     1921 ccagtattcg ctggatatat tgcctacagt atatcggata gaccaggact tgtagcaggt
     1981 tttgttgcag gtggagtagc atctgttggt ggtgcaggct tccttggagc acttgttggt
     2041 ggtttccttg caggttatgc agtagagtta attaaactag cacttaaaaa gttaccaaaa
     2101 acattagacg gtatcaaagt agttttattc tatccagttt tatcggtgtt aattgtcgga
     2161 cttttaatgt tgctattaaa tgtaccaatg agcgcattga acacttggtt gaatgacttc
     2221 ttgaatagtt taagtggaac gaacgcagtt attttaggat tactgttagg tgcaatgatg
     2281 gcagcggatt taggtggacc aattaataaa gctgcttata tatttgcaac gggtacactc
     2341 gcagctagtg tagcaacagg cggtagcgca atcatggcag caacaatggc tgctggcatg
     2401 gtaccaccac tagcaacgtt tgtagcaact cttattttta gaaataaatt tacagctcaa
     2461 gaacgtgatg caggcttaac taactctatt ttgggtgctt cattcattac tgaaggagct
     2521 attccatttg cagcggccga tccacttcga atgattccga gttttattgc cggaagtgct
     2581 atcacaggtg cggtagtaat gttcttaaac attaaagtat tagcacctca cggaggagtt
     2641 tttgttatct tccttgtatc ccaaccttgg ttctatatta ttgcaattat tattggaaca
     2701 ttaatcagcg caggattaat tggtgttcta cgtaagaaac caactgtata aaatatggaa
     2761 atcgtctttt gaaactaaaa aggcgatttc tttttagtaa tttctcgaat tatttccgaa
     2821 aaattgctat actggaagtg aagtgaggtg ggcgtattgg aatttggaga aaaattaatt
     2881 catttaagaa agaaaaatag gttaacacaa aaacaactgg ctgcgaaaat cgggacaact
     2941 gcatccacaa taagcaagta tgaaaatgat aaccaccgac cgccaatttt tattttggct
     3001 aaattagcag aaattcttgg aacaacaacc gattttttat tagatgatgt agctggtttg
     3061 cgagaaaaga attcggtaaa cgcctttcct ttaattggaa atccggaact cgagaaatgg
     3121 tatttagaat taccttatac atactcagag gatgagttat taatgttaaa acgaattgca
     3181 gatgcgattg aaaataaaaa ataattttaa ggagaagcca gctactatta tgtaactggc
     3241 ttttatttgg ttttaaagtt actgctcagg atcttgaggc tcattaggat cttcgttatt
     3301 tggaagcatg gtgctgtaat aacgtctagg ttcagcagca agagtggttg gtgggaaaaa
     3361 cctattcatt gaaggaaaat tactctccat tatacgcatt ttttgagaaa atttcatatg
     3421 taacatggag gttctagcaa tctgattatt aaaagatgct aaagacatat caatctcaaa
     3481 ggtttccata ttagaaaatg ttattaaagt gtggttaaat ccaattgcat gataatcttt
     3541 aatatgttgt gggaaaatcc aaatacattc tgttgaacta ggtgctacag ttggaaatac
     3601 ataagtagaa gtgactgggt caatgataat gggtggctta tgggtaacac caattaagtg
     3661 tttagttccc tctttgcgtc cctcatagct tgatccgaaa aagttacagc tggttttaat
     3721 tagttcaaac ggggtaaatt tagaagtata atgggaatca acttcataaa tttctgaata
     3781 gactatactt ccagattttt ttggaaaaat aatcattgtg tgcgggttta cttcataaaa
     3841 ctgagtactg atttgttctt ttttcatttc attcaactcc tctatgtttg tatttatgtc
     3901 taagaagaaa cctagagtta ttgcctaata agcaaaactt ctaagtaacg actaagcatc
     3961 aaagttagtt atgagttatt ttttgtcatt atagcacatg gtaatttgca agtcattaga
     4021 ttttggtaaa gttgtatttt caagctgttt tctgtttttt cttagtatat tacaattttt
     4081 caaaattgta ataaatatga gtgaaggagt ggtagtcgtg gaaatgcgtg atttttctaa
     4141 ttcgttgatg aatcaggtgg gtgtccttaa gggtgaaaaa gaattaacaa acgtttttat
     4201 cgaatgcttc ctgacgatgc tcctagaaga gagaaaatta gaacaactta gagctgaaat
     4261 tgataaagct ctcgataata ggaacaaagc ggaatttatg aaacttacag aaaaaatgaa
     4321 taaaattcaa caggaaatgc tagcttttga ctagaatata tgaaaaacta agatagtaag
     4381 agctatctta gtttttttga gctgttttat aaattttcaa gcaaaaaatg cttcgaaaaa
     4441 agttctggac agattgctca aatatggtaa actaaataaa aacatatgtt cggtggtgag
     4501 ggtatgacac ttcaaataat tgcaggtaga tcaggcacag gtaaaacaac ttatttaatg
     4561 gacgaagtta gcgtaaaaat taaacaaaat tctaagacat acatctttat tgttccggat
     4621 caaatgacgt ttcaaatgga gacaagcttt ttaaacaaag aaaatttaga aggaatgctc
     4681 gggactcaaa tatttagttt tagtcgttta gcatggaaaa tacttcaaga aacgggtggg
     4741 ttatctaaaa cttttctgag tcaaactgga atcgaaatgg ttattagaaa agctgcactc
     4801 gatcaaagag acaaactaaa aatcttttct agagctacgt ctagaaaagg tttctatgca
     4861 gagttagcga atttatttaa agaaatgaaa caagaagaag tttctataga agatatggtg
     4921 aaaagcgcta ctaacctgtc tacaagtgtg aacaataaaa tccacgatat atcaataatc
     4981 tatcaaaagt atgaagaatt attggcagat aaattcctcg aaaatgaaga ttacttgaga
     5041 ttacttgcgg aaaaaattac agaaagtgat tatttaaatc agacggaaat agtcattgat
     5101 ggctttactt ctttctcgca acaagagctg acagtcattg gtgcattaat gcgaaaatgt
     5161 gataaagtaa cagtttcttt agctttaaat gtgcccgaaa tcaagcatgg attagatgaa
     5221 tacagcatgt ttaaagcaag tacggaggct tactatgctt tattagagct ggcaaaatta
     5281 aatggtatta atgtagaaga agataagttt ttcttagaga ataaacgggc aaaaacagaa
     5341 tcattagcat ttttagcaaa tgcttggggt cacaataaat ttatggcttt taaagaagaa
     5401 cctcataact taagtgttca tcaagcgaac aacagacgtg ctgaaataga aggggttgct
     5461 cgtgaaattc gtcaactcac attaaatgga tacagatatc aagatatggc tattttgaca
     5521 agaaatctcg gagattatga cgttttatgt gaaacagtga tggagtcata taatattccc
     5581 atctttattg ataaaaaaag agctatgtcg aaacacccat ttattgagtt tatccgttct
     5641 agcttagatg ctattttgtt taattggaag tatgaaccaa tctttcaagc agttaagaca
     5701 gagtttttct ttggtgttgc cgaaaaatca agtgttctta gacgtaaagc ggatattcta
     5761 gagaactatg tattagaaaa tggcattcaa aataaatgga aatgggaaaa agaaggcgat
     5821 tggatttatc ggaagattcg tgggctatca actaatgtgt tacctcaaac agatgaagaa
     5881 attcaaacgc aatcaattat taacgaaatg agaagtctta tagtaaaccc actttcaact
     5941 ttagagttaa atctaaagaa agcaaaaaca gggatggaat ttgctttagc tctttatcat
     6001 tttttagaac aagtaaatgc tgtagaacga ttggaatcat ggagacaaag agcagaggag
     6061 cagggttatc tagaacttgc acgtgagcac gagcaagcat ggagcgctat ttcggcgctt
     6121 ttggatgaat ttgtagaagt tttaggtgaa gaaactttag acttaaatag ttttgtagaa
     6181 attattgcca ctgggctaga tgcccttgaa ttttcacttt tgccaccttc cttagatcaa
     6241 gtagttttat ctgatatgga gaatgcgaaa ttactagata tgaaagtgat ttttgcaatt
     6301 ggaatgaacg atggtgttat gccgcttcgc caaaaggata acgggattct ttcggatcaa
     6361 gatagggatg ccttgcgtgc tgaggttagt aatttgaagc catctgctaa aaataatatt
     6421 ggagaagaag atttattggc gtataaaata ataagtttgc ctagtgataa actatttctt
     6481 agttaccctg ctgcggatga agaaggtaaa gtgctaagtg aatccaatta tttaaggaaa
     6541 ataaaaggcc agtttaaaaa attaagcgaa tcggtttatt taacagaccc aggtttatta
     6601 agtgatgcgg aacaaagtag ttatattcgt tctaagcaag caacattagg tttgttgacg
     6661 agtcaattac aaatgtacaa acgaggttat ccactatcta gtgtatggtg ggatgcctat
     6721 aatagttatt ttgaaaatgg aaaagaatct agaatggcta aacaagtgtt atctagtttg
     6781 tattacgaaa ataaaacaaa accactacaa gaaaaaactg ccaaaaactt atttggagaa
     6841 acaatccatg cgagtgtctc gagaatggag aaatttttca gttgcgaatt tcaacatttt
     6901 gctcaatatg gtttaaaatt agaagaacga ggtcattttc agctacaagc tgtagatatg
     6961 ggagaaattt tccatggagc aatggaatgg atttcagcag aattaaaaag aaataatctg
     7021 gattggggca gtttaacaga ccaagaatgt agacaaatgg cgaaattagc aatgactttc
     7081 ctagcgccta aaattcagca tgagatacta cttagctcca aaagaatgga atatattcag
     7141 tataaattgc ttcaaatcat aacgagggca acgacagtac taaatgaaca agcaaaaagt
     7201 agtgcatttc gtccagtcgg cttagaagtt gattttggct taaaaggaga cattccgcca
     7261 ttaaaaattt cgctccaagc gaatagtgaa cttcttttac aaggtcgaat tgataggatt
     7321 gatatggcag aacaagaaga tcggacattc ctacgcatta tagattataa atcgagttca
     7381 catgatttgg ctcttacgga agtttattat ggcttagcgc ttcaaatgct gacgtatttg
     7441 gatattgtag ttacaaatgc acaaaaaatg attggcaaaa cggcagaacc agctggagta
     7501 ctatatttcc atatgcataa tcaatatgta caagcggaga aagagttaag tgatgaggct
     7561 atcgcaaaag aattacaaaa aaattctaaa atgaaaggat taattttatc tgatcctgtg
     7621 gctgtatcat tgatggatac gacacttgaa aaaggtaaat catctaatat tgttccagca
     7681 gaaataaaac aaaatggtga attaagtgcg aggtcaaaaa ctgcgacaag agaagaattt
     7741 gataaaatgc gtcactttgt acgtcataaa taccaagaag ctgggaacaa aatacttgat
     7801 ggagcagttt ccattaaccc atataaacta aaagaaagaa caccttgcca attttgtggt
     7861 tttcgttcat tttgtggatt tgatccatct ctagcaagca atcaatatag acatttaacc
     7921 aatgaaaaaa cagaaacaat tttagcaaaa atggatatcg aaggggggga acagtagcat
     7981 gggattaaat ataccgccaa aaccagaaag ttctttatgg acagatgacc agtggaaagc
     8041 tatccaagct gaagggaaca atgtgcttgt agctgctgct gctggttcag ggaagacagc
     8101 tgtattagta accagaatta ttgagaagtt aataaatgag tcagcgaact taaatgttga
     8161 cgagttgcta atcgtaactt ttactaatgc atctgctgct gaaatgaagt ttagaattgg
     8221 gaaaggcttg gaagaagctc tagctcaaaa tccagattct acccatttaa aaaggcaagt
     8281 ggctttactt aactatgctt ctatttccac tctccactct ttttgcttag aaattattag
     8341 aaaatattat tttgatgcag atattgatcc aaattttcgc ttaattgagc caatcgaaag
     8401 tagtatgatt cgtgatgagg ttctagaaaa tttgcttgaa caagaataca gtattgaaaa
     8461 caatgagccg ttttttcact tggtagagtc ttttactgga gataggtcgg atgcagagct
     8521 tcacgcgtta atatctaagc tatatgattt ctcaagagca aatccagatc cgaatatatg
     8581 gttagaagaa atggtggact tttataatac agaagagact acttcgatta cagaattacc
     8641 ttatttt
//
LOCUS       DABQVC010000118         8608 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.118,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000118 DABQVC010000000
VERSION     DABQVC010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8608
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.118"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            71..622
                     /locus_tag="IBJ56_001935"
     CDS             71..622
                     /locus_tag="IBJ56_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3418186.1"
                     /translation="MEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLE
                     TVEVLDVLSDYYSAHEKQKQPRKETTSVNKTGKEHKEIKQAIRYIKKNIHRSITLEEV
                     ANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRA
                     SYFCKVFKKEFDMTPKEYRDSLK"
     gene            complement(664..1107)
                     /locus_tag="IBJ56_001936"
     CDS             complement(664..1107)
                     /locus_tag="IBJ56_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF861 domain-containing protein"
                     /protein_id="HAM3418187.1"
                     /translation="MADISKELIEQLVKQVVLEKMGQSSKHVDPSGILSVKLPVVKVS
                     EEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEMKDTTFDWFLDYDEVDYIIEGRLD
                     VVIDGRTVSAGPGEIIFIPKGSQIKFSVTGEARFIYVTYPADWQS"
     gene            complement(1100..2221)
                     /gene="eutH"
                     /locus_tag="IBJ56_001937"
     CDS             complement(1100..2221)
                     /gene="eutH"
                     /locus_tag="IBJ56_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutH"
                     /protein_id="HAM3418188.1"
                     /translation="MSINEIIIYLMVIFMILGAIDKIIGNKFGLGAQFEEGIMAMGSL
                     TLAMVGIITLAPVLAKILSPIVVPIYTALGADPAMFATTLLANDMGGFALAQELALTP
                     DAGLFAGAILGSMMGPTIVFTIPVALGIIKKEDHKYLATGVLSGIITIPIGCLIGGLV
                     AGFSPIMIFKNLVPIILVAALIMLGLWFKPEGMIKGFTIFGKGVVIVATIGLVAGAIQ
                     QLTGLTIIPGIAPIGEGIEIVGGIALVLAGAFCLVFVITKVFNKPLMKMGKLLGMNEV
                     AAAGMVATLANSIPMFQMLKDMDERGKIINVAFAVSAAFVLGDHLGFTAGVAQDMIFP
                     MIVGKLVGGVTAVAVGIYMANRMMKKNKAKEQTAVKDNG"
     gene            complement(2237..2782)
                     /locus_tag="IBJ56_001938"
     CDS             complement(2237..2782)
                     /locus_tag="IBJ56_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HAM3418189.1"
                     /translation="MAEQSLGILELRSISKGYEMADVFLKAGNVTLFTFRPTCPGKFL
                     IILQGASGELTSAMQDAKEEAGKFHVSSYILHMAHEELLAFLNNKHPKVEVDAVGIIE
                     ISQLGAGLNAVNEALKKSAIHLKRMTLGASIGGKFVAVFTGEVSAIQEGMRILIETAE
                     PKKVIHHTVIPSPDELLKRYL"
     gene            complement(2775..3044)
                     /locus_tag="IBJ56_001939"
     CDS             complement(2775..3044)
                     /locus_tag="IBJ56_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HAM3418190.1"
                     /translation="MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAA
                     DNAGAGNGDLVLVTTGSAARASTGDNTIPVDACIVGIIDSVERYG"
     gene            complement(3059..3631)
                     /locus_tag="IBJ56_001940"
     CDS             complement(3059..3631)
                     /locus_tag="IBJ56_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein"
                     /protein_id="HAM3418191.1"
                     /translation="MSMELDALIKAVTEEVMRRLQLPEKKMIIMGQDSEHTLRQCYLK
                     EYQVSLYDRSERACDILLLEELDIAELARISLFAPMNKKEQFITDHLLAGRPTWIMKS
                     GIKAHAYKRSAKYGIRQLFQEYEEKLSRFGVEFIESPVKETKESKVITEQDVEKLTKN
                     KSEFILPKGSFLTPLAKDYLQEKRISIKES"
     gene            complement(3628..4269)
                     /gene="pduL"
                     /locus_tag="IBJ56_001941"
     CDS             complement(3628..4269)
                     /gene="pduL"
                     /locus_tag="IBJ56_001941"
                     /EC_number="2.3.1.222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate propanoyltransferase"
                     /protein_id="HAM3418192.1"
                     /translation="MNNELITSLIEEVTRRALLETGVEVEASGRHVHLDRETVDALFG
                     PGYELTHFRDLSQPGQYVCKERISIVGPKSVIHNVVILGPIRKKTQVEISSTDGTALG
                     IKAPVRESGDIAGTPGILLLSAKNSVQLSEGLIVAKRHIHMTPADAEKQQVSQSEIVQ
                     VKINGDRPLIFDDVVVRISPDFATYMHIDYDEANACGFKKGIRGQIIKKTKAK"
     gene            complement(4282..5037)
                     /locus_tag="IBJ56_001942"
     CDS             complement(4282..5037)
                     /locus_tag="IBJ56_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin adenosyltransferase"
                     /protein_id="HAM3418193.1"
                     /translation="MAILTEDELRKAYLHTDLKTTKKLDIKKGTIITPSAKSFLSEKK
                     IDLHYIDEIAETKVVVEPVKKETTRAKFQTIYGGALDEKPEHMTHLRGNLLVFKDHPQ
                     IAFRGKLDTLEAEILETQCSVAAEFKDLAEDLQEILTFVRNIVRSEVLNEQIESVHLL
                     GMDEKELRERSHNPKKYYQMTHFMPDYTMGNAVIRLNKIRTMVRETELAAFLAFKEAD
                     YSIKRPDIIQALNRLSSLFWILMFRVRTGEYKK"
     gene            complement(5203..5487)
                     /locus_tag="IBJ56_001943"
     CDS             complement(5203..5487)
                     /locus_tag="IBJ56_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HAM3418194.1"
                     /translation="MANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLV
                     TVMVRGDVGAVKAATDAGAAAAERVGELLSVHVIPRPHSEVDAILPKSAE"
     gene            complement(5519..6979)
                     /locus_tag="IBJ56_001944"
     CDS             complement(5519..6979)
                     /locus_tag="IBJ56_001944"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetaldehyde dehydrogenase (acetylating)"
                     /protein_id="HAM3418195.1"
                     /translation="MALEDKDLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIA
                     DAGYGAREKLAKMAHEETGFGIWQDKVIKNVFASKHVYNYIKDMKTIGMLKEDNEKKV
                     MEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETVRIISE
                     AAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAYSSGTPAIGVG
                     PGNGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGA
                     HFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIANLAGLTVPADARVLIAEETKVGA
                     KIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKK
                     PVSRLLVNTPGALGGIGATTNLVPALTLGCGAVGGSSSSDNIGPENLFNIRRIATGVL
                     ELEDIRKEENQATSELPVDADALIQSLVEKVLAELK"
     gene            complement(6979..7500)
                     /locus_tag="IBJ56_001945"
     CDS             complement(6979..7500)
                     /locus_tag="IBJ56_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HAM3418196.1"
                     /translation="MPNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVIRGGLTT
                     VELTGDVGAVNAAIEAGKAATEDLGCLVSSHVIARMSEDTKALFVPQEEVKTQPKEVE
                     QEEPKEVIQQVVEVNTNTKSAEKKLRAMKVIDLRKLAYTLNNVPIPKSKIKYANKDKL
                     VHALKDIYGRSEN"
     gene            complement(7515..8168)
                     /gene="eutL"
                     /locus_tag="IBJ56_001946"
     CDS             complement(7515..8168)
                     /gene="eutL"
                     /locus_tag="IBJ56_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HAM3418197.1"
                     /translation="MKNDKLPASVLSVKVVSNVDNGLFKQLDLKPHQRSLGIITSDCD
                     DVTYTALDEATKAAEVDVVYAKSMYAGAGNASTKFAGEVIGIIAGPSPAEVKSGLSVA
                     VDFIENGASFVSANEDDSVPYFAHCVSRTGTFLSKEANVAEGEAIAYLIAPPLEAMYA
                     LDAALKAADVTIGAFYGPPSETNFGGALLTGSQSACKAACDAFKMAVENVAENPLQY"
     gene            complement(8191..>8608)
                     /locus_tag="IBJ56_001947"
     CDS             complement(8191..>8608)
                     /locus_tag="IBJ56_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase"
                     /protein_id="HAM3418198.1"
                     /translation="TKNAKFQIVVGDGLSSAAIEANIKDILPSIKQGLKMYNLDFDNI
                     IFVKHCRVPSMDQIGEITGADVVCLLVGERPGLVTAESMSAYIAYKPTIGMPEARRTV
                     ISNIHSGGTPPVEAGAYIAELIHNMLEKKCSGIDLK"
BASE COUNT         2435 a         1820 c         1518 g         2835 t
ORIGIN      
        1 aggattaaac gttatttaaa gcgattttat ggtataatta gtgcagaaat aaaacaggga
       61 gggaaggact ttggagaaag aaaaagttgt aaatattcaa cctttgatgg atagtcaagt
      121 agagagccaa ttcacccaac aaattcaaga agatttcaac aaaaaaaatc cagatcactc
      181 tgccctactt cattcacttg aaaccgttga agtgcttgat gttttaagcg attattactc
      241 tgcacatgaa aaacaaaaac aaccaagaaa agaaaccact agcgtaaaca aaactggtaa
      301 agagcataaa gaaatcaagc aagctattcg ttacattaaa aaaaacattc accgctccat
      361 cacattagaa gaagttgcta attatgtcta tctaagcccg ttttatttaa gtaaattatt
      421 taaaaacgaa ttaaatatta attttattaa ttacgtcaac gaacaaaaaa tgctctatgc
      481 gaaagaacaa ctagaaaaaa gtgactgggc ggtccataca attgctaaaa atttaggttt
      541 ttcaagggca agctattttt gcaaagtctt taaaaaagaa ttcgatatga caccaaaaga
      601 atatcgcgac tccttaaaat aaaaaacgat ttcagccaaa gccgaaatcg ttttttatta
      661 ttattatgac tgccaatcag ccggataagt aacataaata aatcttgctt caccagttac
      721 ggaaaacttg atttggctac cttttggaat gaaaataatt tctcctggac ctgctgaaac
      781 agttcgacca tcaatgacaa catctagtct gccttcgata atgtagtcta cttcatcata
      841 atccaagaac caatcgaaag ttgtatcttt catttccatt aaaccaaaac ctagacgttt
      901 actttcttct agtgttacta agtcttttgt ataaacaaca tcgctaggat ttcctgtgtc
      961 taatcgatct tcctctgaaa cttttactac aggaagtttc accgatagaa taccacttgg
     1021 atcaacgtgt ttggaacttt ggcccatttt ttctaggaca acttgtttta ctagttgctc
     1081 aattaattct ttactaatat cagccattat ctttcaccgc cgtttgttct tttgctttat
     1141 ttttcttcat cattcggtta gccatataga taccgacagc tacggcagtt actcctccga
     1201 caagttttcc gacaatcatc gggaaaatca tatcttgggc aaccccagct gtgaaaccta
     1261 gatgatcccc taaaacaaag gccgcagata cggcaaaagc aacgttaata attttaccgc
     1321 gctcatccat atcttttagc atttggaaca ttgggatact atttgcaagt gtcgcaacca
     1381 taccagccgc tgcaacttca ttcataccta gcaatttacc cattttcata agtggtttat
     1441 tgaacacttt tgtaataaca aaaactaaac agaaagctcc tgctagaact agtgcgatac
     1501 caccaacgat ttcgatacct tcgccaattg gtgcaattcc tggaataata gttaatccag
     1561 taagttgttg aatagctcca gcaactagcc caatagtagc aacgattact accccttttc
     1621 caaaaatcgt gaagccttta atcatgcctt ctggtttgaa ccaaaggcct aacataataa
     1681 gggcagctac aagaataatt ggtactaagt ttttgaaaat catgattgga gagaatccag
     1741 ctacaagtcc accgattaaa caaccaattg gaatcgtaat aataccagat aatacgccag
     1801 ttgctaaata tttgtgatct tcttttttta taattccaag cgcaactgga attgtgaaaa
     1861 caatagtagg tcccatcatg gatcctagaa tagctcctgc aaaaagacca gcgtcgggag
     1921 ttagcgcaag ttcttgagct agcgcaaaac cacccatgtc attcgcaagt aacgttgttg
     1981 caaacattgc cgggtcagcc ccaagcgccg tataaattgg tacaacaatc gggcttaaaa
     2041 tttttgctaa aactggcgct aatgtaatga taccgaccat tgctagcgtt agcgatccca
     2101 ttgccataat accttcttca aattgtgcac ctaagccaaa tttgttgccg ataattttgt
     2161 caatagctcc tagaatcata aagattacca ttaaataaat aataatttca ttaatgctca
     2221 aaagtgttcc tccattctat agatagcgtt ttaaaagttc atcaggagaa ggaatgaccg
     2281 tatgatgtat cacctttttt ggttcggcgg tttcgattag aatccgcatc ccttcttgaa
     2341 tagcactaac ttcccctgta aaaacagcca caaatttccc accaatcgaa gcaccgagcg
     2401 tcatgcgttt caaatgaata gccgattttt tcagcgcttc atttactgca tttagtccag
     2461 cgcccaactg actgatttcg ataattccta ctgcgtcaac ttccacttta gggtgtttat
     2521 tgtttagaaa agcaagtaat tcttcgtgcg ccatatgcaa aatataagaa gaaacatgaa
     2581 atttgccagc ttcttctttt gcatcttgca tcgcactagt aagttcaccg gaagcacctt
     2641 gcaaaataat caaaaattta ccaggacatg tcggacgaaa agtaaataaa gttacattgc
     2701 ctgctttcaa gaaaacatcg gccatttcgt accctttact tatactcctg agttcaagaa
     2761 tacctaagga ctgttcagcc ataacgttct accgagtcga taatgccgac gatacatgcg
     2821 tccactggga tcgtgttgtc cccagtggat gctcgtgctg cgctaccagt tgtaacgagc
     2881 acaagatcgc cgtttcctgc tccggcatta tcagctgcca ctatggaatg tcttacatct
     2941 tccgtttcat cggtacaaat ctctactagt agtagtttta aaccattcag tttttcgtct
     3001 tttcttgttg cccataaact cccggtaact tttccaattt gcatgccgct cttccttcct
     3061 aactttcttt aatgctaatt cgtttttcct gtaagtaatc ttttgcaagt ggtgttaaga
     3121 aacttccttt aggcaaaatg aattcgcttt tgttcttagt aagtttttca acatcctgtt
     3181 cggtgatgac tttactttct ttggtctctt ttaccggact ttcgataaat tcgacaccaa
     3241 atcggctcag tttctcctca tattcttgaa aaagttgtct gataccatat ttagcggaac
     3301 gtttataagc atgcgctttg ataccactct tcattatcca agttggccgc cctgctaaaa
     3361 gatgatctgt aataaattgt tcttttttat tcatcggagc aaacaaactg attcgagcta
     3421 attcagcgat atccaattct tccagtagta aaatgtcaca agcgcgttcc gaacgatcat
     3481 aaagcgaaac ttgatattct tttagataac actgtctgag agtgtgttct gaatcttgtc
     3541 ccatgataat catttttttc tctggaagtt gtaatcgtct catgacttcc tcagtgacag
     3601 cttttatgag tgcgtctagt tccatactca tttagccttt gttttcttga ttatttgacc
     3661 tcgaattccc tttttaaaac cacatgcgtt ggcttcgtca taatcaatgt gcatatatgt
     3721 agcaaaatca gggctaatcc gaacaacaac atcatcaaaa attagtggtc tgtcaccgtt
     3781 aattttcact tgaacaattt cactttggga tacttgttgt ttttctgcat cagcaggcgt
     3841 catatgaata tggcgttttg caacaataag tccttctgat aattgaacac tgttttttgc
     3901 ggataatagt aaaattcctg gtgtccctgc tatgtctcca ctttcacgaa ccggtgcttt
     3961 aattccaagc gccgtaccat ctgtggagct tatttctact tgtgtttttt tacgaattgg
     4021 gcctaaaatt acaacgttat gaataacgct ttttggtcca acaatgctaa ttctttcttt
     4081 acaaacatat tgacctggtt gagataggtc acggaaatga gtaagttcat acccaggtcc
     4141 aaatagtgca tcgactgttt cacgatctaa atgaacgtgg cggccggatg cttctacttc
     4201 tacgccagtt tcaagtaacg cacggcgagt gacttcttca ataaggcttg ttattaactc
     4261 attattcatg aataagcctc cttacttttt atattcacct gttctcacgc ggaacatcag
     4321 tatccagaat aaactagaca atcggttaag cgcttgaatg atgtctggtc gcttaatgga
     4381 ataatcggct tccttaaatg ctaaaaaggc agctaattcc gtttcgcgga ccatcgttct
     4441 tattttgttt aatcgaatga ccgcattccc catcgtgtaa tcaggcataa aatgtgtcat
     4501 ttgatagtat tttttcggat tatgactacg ttcccgcagt tctttttcat ccattccaag
     4561 caaatgaact gattcgattt gctcgtttaa aacttccgat cgtacaatat ttcttacaaa
     4621 ggtgaggatt tcttgtaaat cttccgcaag atctttaaac tcagctgcaa cggaacattg
     4681 ggtttccaga atttcagctt ccagtgtatc taattttccg cggaaagcga tttgtggatg
     4741 gtctttaaac acaagcaggt taccacgcaa atgcgtcata tgttcaggct tctcatctaa
     4801 tgctccacca taaatcgttt ggaattttgc tctagtagtt tcttttttca ctggctccac
     4861 tactactttt gtttctgcaa tttcatcaat ataatgaagg tcaattttct tttcagacaa
     4921 gaaactctta gctgaaggtg tgataattgt gccttttttt atatcaagtt ttttggttgt
     4981 ttttaaatcg gtgtgtaaat aggcttttcg taactcatct tctgtcaaaa tagccaaaga
     5041 accacatcct tttgtcccat ttacaattgg tgttagtaat gttgggaagc tttgtattgc
     5101 ttaaatctgg taaaaagcga aagtttcggg caatttccga gtctgatgga acccttttgc
     5161 cttacgctca cgctttttcc tgatttatgt taaaagttag tcttattcag cgctttttgg
     5221 tagaattgcg tctacttcgc tgtgtggacg tgggattacg tgtacagata gtaattcacc
     5281 aacgcgttct gctgctgctg cgcctgcatc tgttgctgct ttaactgcgc caacatcgcc
     5341 gcgaaccata actgttacta gaccgccacc aacttgttct ttacccataa gtgttacgtt
     5401 agctgctttc accattgcgt ctgctgcttc tactgctcct actaaacctt tagtttcgat
     5461 catacctaat gcgtttgcgt ttgccatttt aaaattcctc caattagtgt tttatttttt
     5521 attttaattc tgctaaaact ttttcgacta aactttggat gagtgcgtct gcatcaaccg
     5581 gaagttcaga tgttgcttgg ttttcttctt tacgaatatc ttctaactct aaaacgccag
     5641 tagcgatgcg acgaatgttg aaaagatttt caggtccgat attatcagat gatgaacttc
     5701 ctccaactgc cccacaacca agtgttaaag caggtacaag atttgttgtt gcgccaattc
     5761 caccaagtgc tcctggtgta ttaactaaga gacgggaaac tggttttttc agtgcgaatt
     5821 cgcgaatgat ttctttatct tcagagtgga tgattaaagt atgtccagct ccttcatgat
     5881 aaagaatatc catgctaagt tcacaagctt cttgccaagt ttcggctgta tagaacgcca
     5941 agattggagc taatttttct cttgaataag ggattttagc gccaactttt gtttcttcag
     6001 cgataagtac tcttgcgtca gctggaacag ttagaccagc aaggttagcg atatgttgca
     6061 cgcttttacc tacgattgct ggattcatcg aaccatttgg acgtaagatg aatttaccaa
     6121 gttgaacagc ttctgcatcg gataagaagt gtgctccttg ttttctaaat tcagcaatga
     6181 cagcttcttt attcacacgt tccacaacga cagattgctc agatgcgcaa attgttccgt
     6241 tatcgaatgt tttggaatca agaatatgtt tcactgcgcg aggaatgtta gcactgcgtt
     6301 cgataaatgc tgggccatta cctggaccaa ctccaattgc tggagtacca gatgaataag
     6361 ccgcttttac cattgcagat ccacctgttg caaggataac tgctgtatct ttgtgtttca
     6421 tcagttgatc tgttccttgg atggttggaa cagtcataca gctgatagcg ccttttggac
     6481 aaccagcttt ttctgctgct tcactaatga ttcttactgt ttcaagaatt gcttttaatg
     6541 cgtttggatg tggagaaaat acgatactat ttccggcttt aatcgaaata agtgttttgt
     6601 aaataacagt ggatgtaggg tttgtagaag gaattaatcc tgctactacg ccaagtggaa
     6661 ctgcaacctc cattactttc ttttcgttat cttcttttaa cataccaatg gttttcatat
     6721 ctttgatgta attgtaaaca tgtttcgacg caaagacgtt tttgattact ttgtcttgcc
     6781 aaattccgaa accagtttct tcatgggcca ttttcgcaag tttttcgcga gcaccataac
     6841 cggcatcagc tattgctttt acaattgtat caatttgttg ttggctcatt gcagcaagtt
     6901 ctttttgtgc tttgttagct gattcaatga ggttacgaac ttcttggatt gagcgtaaat
     6961 ctttatcttc tagtgccact agttttcact ccttccataa atatctttta gtgcgtgaac
     7021 aagtttatcc ttgttcgcat atttaatctt gctttttggg ataggcacat tatttaatgt
     7081 gtaagcaagt ttccttagat caataacttt cattgcgcga agttttttct ctgcactttt
     7141 cgtgtttgtg ttcacttcta cgacttgttg aataacttct tttggttctt cttgttcgac
     7201 ttcttttggt tgtgttttaa cttcttcttg aggaacaaaa agtgcttttg tatcttcgct
     7261 cattcttgcg ataacatggc ttgatactaa acaacctaag tcttctgttg cagctttccc
     7321 tgcttcgata gctgcattta ctgcacctac atcaccagtt aattcaaccg tagttaaacc
     7381 accacgaatg acttcacatt gaatcagttc gacatttgct gcttttaaac aagtatcggc
     7441 agcaacaaca gcaccaagaa aacctgtgac ttcaattaaa ccaagcgctt catttggcat
     7501 tttttagcac caccttaata ttgaagtgga ttttcagcca cattttctac tgccattttg
     7561 aacgcatcac aagctgcttt acatgcagat tggctaccag tcaaaagtgc tccgccgaag
     7621 tttgtttcgg atggtgggcc atagaaagct ccgattgtta cgtctgctgc ttttagtgct
     7681 gcatctaacg catacatagc ttcaagtgga ggggcgatta agtaagcaat cgcttcacct
     7741 tctgcaacat tcgcttcttt tgaaaggaat gtaccagttc ttgaaacaca atgcgcgaag
     7801 taaggaacac tatcatcttc atttgcacta acaaagctag cgccattttc gatgaaatct
     7861 actgctacag aaagaccact ttttacttcc gcagggcttg gtccggcgat aataccgata
     7921 acttcaccag cgaattttgt ggatgcattt ccagcaccag catacatact tttcgcataa
     7981 acaacatcta cttctgctgc ttttgttgct tcgtcaagcg ctgtataagt tacatcatca
     8041 caatcagatg taataatacc aaggcttctt tgatgcggtt ttaagtctaa ttgtttaaat
     8101 agaccattat ctacgttaga tacaactttg acacttaaaa cggatgcagg taatttatca
     8161 tttttcatga agtttcctcc tctaactagc ttattttaaa tcaataccag aacatttttt
     8221 ctcaagcata ttgtgaatta attcagcaat gtatgctcct gcttcaactg gtggagttcc
     8281 gccgctatgg atgttagaaa taacagtacg acgagcttct ggcataccaa ttgttggttt
     8341 gtaagcaata taggcactca tggattcagc agtgactagg cctggacgtt cacctacaag
     8401 taagcaaact acgtcagcgc cagtgatttc accgatttgg tccatagaag gtacacgaca
     8461 atgtttaacg aaaataatgt tatcaaaatc taagttatac attttcaaac cttgtttaat
     8521 ggatggcaag atatctttga tgttagcttc aattgccgct gagctaagtc catcaccaac
     8581 aacgatttga aatttggcgt tttttgtc
//
LOCUS       DABQVC010000119         8550 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.119,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000119 DABQVC010000000
VERSION     DABQVC010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8550
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.119"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            191..2599
                     /locus_tag="IBJ56_001948"
     CDS             191..2599
                     /locus_tag="IBJ56_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit A"
                     /protein_id="HAM3418199.1"
                     /translation="MSFLHLAIVLPFIVALLIPLFYRWTKQVHTGWLVLPIPVILFIY
                     FLTFIPKTMDGATIVSMPWIPRLGINFTVVVDGLSLLFALLITGIGSLVTFYSIYYLG
                     KKKERLSNFYTFLFIFMTAMLGVVLSDNLIVLYLFWELTSISSFLLIGYWYHRERSRY
                     GARKSMMITVFGGLMMLGGFILLHIMSDSFSIREIISNADVISNNSLFIPAMILILLG
                     AFTKSAQVPFHIWLPDAMEAPTPVSAYLHSATMVKAGIYIVARFTPLFASSGVWFWTV
                     SLVGITTLFWGSLNATKKNDLKAILAYSTISQLGLIMALLGVGAASLHFDTLSDDIYV
                     MAIVAAVFHLFNHATFKGSLFMMVGIVDHETGTRDIRRLGGLMRIMPITATIAFIGTF
                     AMAGIPPFNGFLSKEMFFESMVNITQLQLFDASTWGVLLPVVAWVASVFTFVYSMIIF
                     FKTFTGKVKPYLLPKKPHEAPFGLLLPPIILSIFVVGIGLFPNLIAEPILEPAVRAIV
                     PGLSTDFSIHISLWHGFTPALLMTFGVVAVGIVLFLTHKYWKPWITTKVPKALRIGKT
                     YDNGMYYLEQGSYRMTMFIMTGWLRTYLNYMLSAFILMMASVMIFTQALDFNFSSMTK
                     VTVVDFVLAAVILVTLVGIVFSKSRITSIILLGAMGYTISIFFVISRAPDLALTQLII
                     ETISVVLYLLVFYHLPQFSNIEEKPKWLSMKTFLSIGVGVIITLVSLSAYNTTFYDSI
                     SKYYVDNAYVEAAGRNIVNVILVDFRGFDTMFETAVLSIAAIGIYAMIKLRLTKRGEN
                     DENE"
     gene            2583..3008
                     /locus_tag="IBJ56_001949"
     CDS             2583..3008
                     /locus_tag="IBJ56_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit B"
                     /protein_id="HAM3418200.1"
                     /translation="MMKTNDVLLRNVTKVVAFIIFLFSLHLFFAGHYNPGGGFVAGLT
                     TAGAITLTLLAYDTKTVASMLNINTIMLTGVGLVFALGTGMIGIFTGDPFLTHKFGHV
                     DLPILGDTALHTATLFDLGVYLVVVGVTLTIIQTIGESD"
     gene            3008..3355
                     /locus_tag="IBJ56_001950"
     CDS             3008..3355
                     /locus_tag="IBJ56_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit C"
                     /protein_id="HAM3418201.1"
                     /translation="MELLMSILIGLIFAAAVYLILSKSLLRIIIGTAVLSHGVNLLVL
                     TMGGLKKGRVPILGTPGAGTYNDPLPQALILTAIVISFGVTAFFLVLAYRAYQELDSE
                     SVSKTRGHEADDE"
     gene            3348..4832
                     /locus_tag="IBJ56_001951"
     CDS             3348..4832
                     /locus_tag="IBJ56_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit D"
                     /protein_id="HAM3418202.1"
                     /translation="MNNIILMPILIPFLGAITLMLLPKKVIIQRVFALIFSGILVVAT
                     LGLVFYIRENGITTVNIGNWAAPFGITMVGDMLAVLLTATTSIVLFCVILYSFYTIGK
                     PREKFLYYPAILFMIVGVNGSFLTGDIFNMFVFFEVMLMASYVLLVIGGTQVQLKATI
                     KYLLINVVGSGFFVVAIALLYSMIGTLNMADISQKITDLNGANTGMISVVAVLFLFVF
                     GLKAGLFPLYFWLPGSYFAPPIPVLALFGGLLTKVGVYAIIRTYTLFFSSLTDFVVPL
                     LGILAIVTIVLGVIGAISYYDMKTIVIYNIMIAIGVILFSVSIMTRESMTGAVFYLIH
                     DMIIKAALFLIVGIVMAITGYSSVKKFSGLMSVKPSLGWIFFIATLGLAGIPPLSGFI
                     GKLLIVEGAFSAGQIVGGIIILLSSLFVLMSLIKVFTKGFWGEKKGVFNLQIPYKKML
                     VPVVILLAISIGYGVFSNAIYPFIEQAVDPLVDPSVYIHAVIKE"
     gene            4839..5318
                     /locus_tag="IBJ56_001952"
     CDS             4839..5318
                     /locus_tag="IBJ56_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit E"
                     /protein_id="HAM3418203.1"
                     /translation="MAFQLILNIILACLWMFLESSFSFATFIIGFIIGIFLLFFMRRF
                     LGSRFYLFRLFALVKLVFRFLHDLIVSTVHVSRIVLKKDMNIRPGIFRYDTTLETDWE
                     VTMLALLITLTPGTLSIDISDDYKAIYVHSLHVPNIEEEIATIRKSYEGAIMEVFHG"
     gene            5315..5602
                     /locus_tag="IBJ56_001953"
     CDS             5315..5602
                     /locus_tag="IBJ56_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit F1"
                     /protein_id="HAM3418204.1"
                     /translation="MIIQIALSIGLLLYSISTFLYLYRILKGPTTSDKVVALDSIGMN
                     LVAIVALLSMFYDTHAFLDVILLIALLAFIGTVSFAKFIEKGKVIDRERDN"
     gene            5586..6179
                     /locus_tag="IBJ56_001954"
     CDS             5586..6179
                     /locus_tag="IBJ56_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit G"
                     /protein_id="HAM3418205.1"
                     /translation="MNVIIEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISN
                     TFGVSLLLFATVGYFFHSGEGFNARVLLAVLFIFLTTPVASHLINRAAYDTGVPLAIR
                     IRDQLRSVKKDDIKKKKNLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQ
                     EREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK"
     gene            complement(6224..6595)
                     /locus_tag="IBJ56_001955"
     CDS             complement(6224..6595)
                     /locus_tag="IBJ56_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HAM3418206.1"
                     /translation="MGLQETIGIEIVSVEKGKAVVQLEVTEKVHQPFGYLHGGVSVVL
                     AEHAASIGAAKSIEPDEIVFGLEINANHLASKQEGLVTATAEAIHIGKSTQVWEIKIT
                     DETEKLLCISRCTIAVKKKRK"
     gene            6723..7196
                     /locus_tag="IBJ56_001956"
     CDS             6723..7196
                     /locus_tag="IBJ56_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent PAP2 family protein"
                     /protein_id="HAM3418207.1"
                     /translation="MSIFTNTPLIASIIAIVFAQVVKVPIHILVYRKFNLGLMFSTGG
                     MPSSHSAAVTALMTTLAIEYGLDSPYFAIAVVFGIIVMFDATGVRRQAGEQAVVLNKL
                     VTDFQDFVEHAKGLAAPEQEEKTKHLKELLGHKPMEVFFGALTGIAIGFILEMFM"
     gene            7308..8528
                     /locus_tag="IBJ56_001957"
     CDS             7308..8528
                     /locus_tag="IBJ56_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HAM3418208.1"
                     /translation="MKKVTLIFGIYTFILGIIVGIIAALFLAMVHFATTFLWDYLPNQ
                     FDFSWYYPLLIGLIGSFFVGMVQLKFGDYPRSMHDNVAEAKKTGRMEYRKVLFPTILS
                     AWIILTFGASVGPEAALIGIVGGATTWIIDHLKLSMAHKEELVSLSVGAIISSIFHAP
                     FSGLAEEIDESSQAKKIPKNSKLVLSLLISFSALGSFLWLKSFLKMPASIFAIRLPDM
                     GWSWWFILLFIPMIILGWLFSVYFQQLQVYIAKAASVIKNKMVAAVIGGLSIGLFGII
                     SSFMLFSGEHQLIELTTTVQNYSIPFLLIIALLKPVLVAICLATGWNGGAIFPAIFTS
                     TIMGYIATFWMDGSTGFLITIFVTASCTKIIGKPVLTASILLFIFPLQFFPFILLTAF
                     IVNRNWLVNFKKTA"
BASE COUNT         2178 a         1466 c         1846 g         3060 t
ORIGIN      
        1 gtttatttag gtacttcgtg aatagtaagg ttgttgaaat ttgatgagtt agcacggttt
       61 tctaaaattt tagttataac tatgtttcat taaatgtaag tacttgctta aaaaataatg
      121 atttcctgtt tttattttca catttccagg atgagtttcc gtataaaaat tcttcgagga
      181 ggagccgatt ttgtcatttc ttcatctagc aattgttctg ccatttattg tggcactgct
      241 aattccactt ttttaccggt ggaccaaaca agttcatact ggctggttag tacttccaat
      301 tccagtgatt ttgtttattt acttcttaac atttatccca aaaacgatgg acggggcaac
      361 gattgtttca atgccttgga ttccgcgact tgggattaat tttacggtag tagtagatgg
      421 gcttagtttg ctgtttgcgc tacttattac ggggattggt tcactcgtta ccttttactc
      481 tatttattat ttagggaaaa agaaagaacg acttagcaat ttctatacat ttttatttat
      541 ttttatgacg gcaatgctcg gggttgtctt gagtgataac ttgattgtgt tgtatctttt
      601 ctgggagctt acttccatta gttcgttctt attgattggg tattggtatc atcgtgagcg
      661 ttcacggtac ggggctcgta aatcgatgat gattacagtc ttcggcggac tgatgatgct
      721 tggcggattt attttgcttc atattatgag cgattctttt tccattcggg agattattag
      781 taacgcggat gtaattagta ataatagttt attcattcct gcgatgattc ttatcttgct
      841 cggggcattt acgaaatctg cgcaagttcc attccatatt tggttgccag atgcgatgga
      901 agctcctact ccggtcagtg cctacctcca ctctgctacg atggtaaaag ctgggattta
      961 tattgtcgct cggttcacgc cactatttgc aagttcgggt gtatggtttt ggacggtatc
     1021 actcgttggg attacgaccc ttttctgggg ttcacttaat gccacgaaga aaaatgattt
     1081 aaaagcaatt ttggcttatt cgacgataag tcagcttggt ctcattatgg cgcttcttgg
     1141 tgtcggtgct gcctcccttc actttgacac gcttagtgat gatatttatg tgatggcgat
     1201 tgtcgcagct gtattccatc tatttaatca cgcgacattt aaaggtagtt tgtttatgat
     1261 ggttgggatt gtcgatcatg aaacagggac gcgggatatt aggcgacttg gtggcttaat
     1321 gcgaattatg ccgattacgg cgacgattgc gtttatcgga actttcgcaa tggccggtat
     1381 tccaccgttt aatggatttc taagtaaaga gatgtttttt gaaagcatgg taaatattac
     1441 gcaattgcaa ttgtttgatg caagtacttg gggcgttctg ctccctgttg tagcttgggt
     1501 tgctagtgtg tttacgtttg tttatagtat gattattttc tttaaaacat ttactggaaa
     1561 agtgaaaccg tacttacttc cgaaaaaacc gcatgaagcg ccattcggac tacttttacc
     1621 accgattatt ttatcgattt tcgtggttgg tattggtctc ttccctaatt taattgcgga
     1681 gccgattttg gagcctgctg taagagcaat tgttcctggg ctttctacgg atttctcgat
     1741 tcatattagt ttgtggcacg gctttacgcc tgctctgtta atgacgttcg gtgttgttgc
     1801 agtggggatt gtcttgtttc ttacacataa atactggaaa ccttggatta cgactaaggt
     1861 tccaaaagca cttcgaattg ggaaaacgta tgataatggg atgtattatt tagaacaagg
     1921 ctcgtatcgt atgacaatgt ttattatgac tggttggctt cggacttact tgaattacat
     1981 gttatcggct tttattttaa tgatggcttc ggtcatgatt ttcacacaag cacttgattt
     2041 caatttctca agtatgacga aagtgacagt tgttgatttt gttttagcgg cagtgatttt
     2101 agtgacgttg gttgggattg tcttttccaa atcgcggatt acttcgatta ttttacttgg
     2161 agcaatggga tacacgatta gtattttctt tgttatctct agagcaccag accttgcttt
     2221 aacacagctt attattgaaa ctatttccgt tgtgctttat ctacttgtgt tttatcatct
     2281 tcctcagttt agtaatattg aggaaaagcc gaaatggtta tcaatgaaga catttttgag
     2341 tatcggggtt ggtgtaatta tcacccttgt ctctctttca gcgtataata caacatttta
     2401 tgattcgatt tcgaagtact atgtggacaa tgcttatgtg gaagcggcgg gacgaaatat
     2461 tgtaaatgtt atcttagttg acttccgtgg ttttgatacg atgtttgaga cagctgtgct
     2521 ttcgattgcg gcgattggta tttacgcgat gattaaatta cgactgacga aacgaggtga
     2581 gaatgatgaa aacgaatgat gttctactga gaaatgtaac gaaagtagtt gctttcatta
     2641 ttttcttatt ctcactccat ttattctttg caggacatta taatcctggt ggcgggtttg
     2701 tggccgggct tacaacggct ggcgcaatta cattaacgct acttgcttat gatacaaaaa
     2761 cggtggctag tatgcttaat atcaatacga ttatgcttac tggggttgga cttgtatttg
     2821 cccttggtac tggaatgatt gggattttta caggagatcc tttcttaacg cataaatttg
     2881 gtcatgttga tttgcccatt ttaggagata ctgcgttaca cacggcgact ttgtttgacc
     2941 ttggggttta cttagttgtt gtcggtgtaa cacttacgat aattcaaacg attggggaga
     3001 gtgactgatg gaactattaa tgtctatatt aatcggcttg atttttgcag ctgctgtcta
     3061 cttaattctc tctaaaagtt tgctacggat tattattgga acggctgtcc taagccacgg
     3121 tgtcaatttg cttgtactta cgatgggtgg actgaaaaaa ggtcgcgtgc caattcttgg
     3181 tacaccggga gcaggaacgt ataatgatcc ccttccacaa gcacttattt tgactgcgat
     3241 tgttataagc tttggtgtaa ctgccttttt ccttgttctt gcttatagag cttatcagga
     3301 gcttgatagc gagagtgtat ccaagacgag aggacatgaa gccgatgatg aataatataa
     3361 ttttaatgcc gattttgata cctttccttg gagcaattac gttaatgttg cttccgaaaa
     3421 aagtaatcat tcaacgggta ttcgccctta tttttagtgg tattttggtt gtagcgacac
     3481 ttggacttgt attttatatt cgagaaaacg ggattacaac tgtgaatatt ggtaactggg
     3541 cggctccttt tgggattacg atggttggcg atatgcttgc tgtcttgctt acggcaacga
     3601 cgagtattgt tttattctgc gtgattcttt attcttttta tacgattggg aaaccacgag
     3661 agaaatttct ttattatcca gcgattctct ttatgattgt tggggttaat ggttcgtttt
     3721 taactggcga tatttttaat atgttcgtat tctttgaagt tatgttgatg gcgtcttatg
     3781 tactacttgt cattggtggg actcaagttc agctcaaagc gacgattaaa tacttgttga
     3841 ttaatgtggt tggttccgga tttttcgttg tagcaattgc gctactttat tcgatgattg
     3901 gaacgctcaa catggcagat atttcgcaaa aaatcacgga cttaaatggt gcaaatacag
     3961 gaatgattag cgttgtcgcg gttctgttct tgtttgtatt cggactaaaa gccggactat
     4021 tcccgcttta cttctggcta ccaggatctt actttgctcc accaattccg gtgcttgctt
     4081 tgttcggtgg acttctgaca aaagttgggg tttatgcaat tatccggaca tacacactat
     4141 ttttcagttc gttaacagat tttgttgttc cgctacttgg aattctcgcg attgtgacga
     4201 ttgttcttgg ggttattggg gcaattagtt actatgatat gaaaacgatt gtgatttata
     4261 atattatgat tgcgattggt gttattctgt ttagcgtttc gattatgaca cgcgaatcaa
     4321 tgactggtgc tgtcttttac ttgattcacg atatgattat taaagccgcg ctgttcctta
     4381 ttgtcgggat tgtgatggcg attactggtt attctagtgt aaaaaaattc agtgggttga
     4441 tgagcgtgaa gccttcgctc ggttggattt tcttcattgc tactcttggc cttgcaggaa
     4501 ttccacctct tagcggcttc attggaaaat tattgattgt ggaaggtgct ttctctgctg
     4561 gtcaaatagt tggcggaatc atcatcttat tatccagctt attcgtcctt atgtctttaa
     4621 tcaaagtctt tacaaaaggc ttctggggcg agaaaaaagg cgtattcaat ttacaaattc
     4681 cgtataaaaa aatgcttgtg ccagtagtta ttctacttgc gatttcgatt ggttatggtg
     4741 tgtttagtaa tgcaatttat ccgtttattg aacaggcggt tgaccctctt gttgaccctt
     4801 ctgtttatat ccatgcggtg ataaaggagt gataaaagat ggcttttcaa cttattctta
     4861 atataatact tgcttgtttg tggatgtttc ttgagtcatc atttagtttt gcaacattta
     4921 tcattggctt tatcatcggg attttcttgc tattctttat gcgacgtttc cttggatcaa
     4981 gattttacct tttccggtta ttcgcccttg tcaaactggt tttccgcttt ttgcatgatt
     5041 taattgtttc tacagttcat gtaagtcgga ttgttttaaa gaaagacatg aacattcgac
     5101 cggggatttt cagatatgat acgacgcttg agacagactg ggaagtgacg atgctcgcac
     5161 tactgattac gttaacgccc gggacacttt cgattgatat ttcggatgat tataaagcaa
     5221 tctatgtaca ctcgcttcac gtccctaata ttgaagaaga aattgcaaca attcgtaagt
     5281 cttatgaagg cgcgattatg gaggtgttcc acggatgatt attcaaatcg ctttatccat
     5341 tggtttactt ctctattcga tttcaacttt cttatatctt taccgtattt taaaaggacc
     5401 aactacttct gacaaagtgg tggcgctgga ttctattgga atgaacttag tggccattgt
     5461 agcgctactt tcgatgtttt atgatacgca tgcctttttg gatgttattt tacttattgc
     5521 gcttcttgca tttatcggaa cggtttcctt tgccaaattt attgagaaag ggaaggtgat
     5581 tgatcgtgaa cgtgataatt gagattatta tttctattat gattttaatt ggcggtttgc
     5641 ttagtattct tgccgcaatc ggggttatca gattgcctga cgtgtacact agaacgcatg
     5701 ctgccgggat tagtaataca tttggcgtta gcttacttct gtttgcaacg gttggttact
     5761 ttttccactc aggcgaaggt tttaatgctc gagtacttct ggccgtattg tttattttct
     5821 taactacacc agtggcttct caccttatta accgggctgc ttatgatacc ggtgttccgc
     5881 tagctattcg aattcgtgac caattgcgtt cggtgaaaaa agacgatatt aagaaaaaga
     5941 aaaatcttat tatccgtcaa gaacaaattg aaaaagcacg acaagaacgg gaagaattgg
     6001 aagaacgaat ggaatgggaa cgacgcgaag aaaaaatcga tgagcgtgaa gatcaagaag
     6061 aacaagaacg ggaacgcgag gaacaaacga ttgaagaaca gtcggatgat tccgagcatg
     6121 aaatcatcga gcaagatgaa agtgaaactg aatcagacga tgataaaaca gagaaataaa
     6181 aaaagcatgg cgcgagttca tcaattgacc tctgccatgc tttttatttt cgtttctttt
     6241 taactgcaat ggtacatcta ctgatacaaa gtaacttctc ggtttcatca gtaatcttta
     6301 tttcccaaac ttgggtactt ttaccaatat ggattgcttc tgcagtcgct gttactaatc
     6361 cttcttgttt tgatgccaag tgattggcat taatttctaa accaaagacg atttcatcgg
     6421 gttcgattga tttagcagca ccaatacttg ctgcatgttc cgctaaaaca acagaaaccc
     6481 ctccatgcaa atagccaaac ggttgatgga ctttttctgt cacttctaat tgaacaacgg
     6541 cttttccttt ttctactgaa acaatttcaa tgccaatagt ttcttgaagt cccatatgtt
     6601 cccttctttc cgaatttgat ttatacttta ttatataaga gttggtagaa aaactctaga
     6661 aaaggttttt aataagctca ttgtggtaaa ataagaatag actttttgac aggagagatt
     6721 tgatgtcgat atttacgaat acaccattaa ttgcatctat tattgcgatt gtgtttgccc
     6781 aagtggtcaa agttccgatt catattttag tataccgaaa gtttaacctc ggactaatgt
     6841 tttccactgg tggtatgcct agctctcact cggctgcggt tactgcgcta atgacaacac
     6901 tcgcaattga atacgggctc gattcacctt atttcgcgat tgctgttgta tttggtatta
     6961 tcgtgatgtt cgatgcgact ggcgttagaa gacaagccgg tgaacaagca gttgttttaa
     7021 acaaattagt aacggatttc caagacttcg tggaacatgc aaaagggctc gcggcacctg
     7081 aacaagaaga aaaaacgaag catttaaaag aattacttgg ccataaaccg atggaagttt
     7141 tcttcggagc acttaccggg attgcgattg gattcatttt agaaatgttt atgtaaatga
     7201 aaagttgact ccttgtagtc aacttttttt gtttgtcgtt agtttacagc tttatgttag
     7261 agggaaaatc atgatatcaa cagattttac aaaaggggcg agtttcagtg aaaaaggtaa
     7321 cacttatttt tggcatttat acttttatcc tcggaatcat agtgggaata attgccgctt
     7381 tatttttagc aatggttcat tttgccacga cttttttatg ggattatctt cctaatcagt
     7441 ttgatttttc atggtattat cctctactaa tcggtttgat tgggagtttt tttgtaggaa
     7501 tggttcagct gaaatttggt gactatccgc ggtcgatgca tgacaatgtt gctgaggcga
     7561 agaaaacagg acggatggaa tatcgcaaag ttctgtttcc tacgatactt agcgcttgga
     7621 ttattttaac atttggggcg agcgttggtc cggaagctgc tttgattggt attgttggtg
     7681 gtgccacgac ttggattatt gatcatctaa aactatctat ggcgcataaa gaagaacttg
     7741 ttagtttgag tgttggcgcg attatttcca gtattttcca cgctccgttt agcggactag
     7801 ccgaggaaat tgatgaaagt agtcaagcga agaaaattcc caaaaactct aaattagtgt
     7861 tatcgcttct tatttctttt agcgcgctcg gatctttcct ttggctgaaa tcctttttaa
     7921 aaatgccagc gagtattttt gcgattcggc tacctgacat gggttggtct tggtggttta
     7981 ttttactttt tattcctatg attattcttg gatggctctt tagtgtttat ttccagcaat
     8041 tgcaagtcta tatcgcgaag gcagcttctg tcattaaaaa taaaatggtc gcggcggtta
     8101 ttggcggttt gagcattggt ttatttggga taatttcttc cttcatgtta ttttctggtg
     8161 agcatcagct gattgaattg acaacaactg tccaaaatta ttcgattccc tttttactta
     8221 ttatcgcctt gttaaaacct gttttggtcg ctatttgttt agcaactggc tggaatggcg
     8281 gtgcaatttt cccggcgatt tttactagta cgattatggg gtacatagca acattttgga
     8341 tggatggatc gactggtttc ttaatcacta tttttgttac tgcaagttgt acaaaaatca
     8401 taggaaaacc ggttctaact gcctctattt tattatttat attcccactt caattctttc
     8461 catttatttt attaactgca tttatagtga atagaaattg gttagttaac ttcaaaaaaa
     8521 cagcataaaa actaaggaga aatccttagt
//
LOCUS       DABQVC010000120         8497 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.120,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000120 DABQVC010000000
VERSION     DABQVC010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8497
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.120"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            87..965
                     /locus_tag="IBJ56_001958"
     CDS             87..965
                     /locus_tag="IBJ56_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAM3418209.1"
                     /translation="MSEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGS
                     LNLGVNDMPIQLKEGEIQVINGGDVHYFLASPSSERIVIQFDLSLFQEEMQMDGQMQT
                     LREMLTEMAHLSREWPEETVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYR
                     EIPQIKTQPDSVISEDAVLKSQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYY
                     FTKFFKRNTGMTFVTFLNDYRLNKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRA
                     MGVAPLKYRKTIYGNN"
     gene            1040..2116
                     /locus_tag="IBJ56_001959"
     CDS             1040..2116
                     /locus_tag="IBJ56_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAM3418210.1"
                     /translation="MTLKVGIIGCGGIANGKHMPSLLKAEKAEMVAFCDIVLEKAEAA
                     AKEFGSENASVYTSYIELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAK
                     TTEEAKSMIEAANRTGKKLTIGYQNRFRKDSDYLHQVCENGELGDIYYAKAKAIRRRA
                     VPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNYKPKYVVGNSYHKLAKKENAANA
                     WGSWDPNKFTVEDSAFGFITMENGATIVLEASWALNTLDVGEARTSLSGTEGGADMED
                     GLRINGEAHSQMYEKKIQLEAGGVDFYDGTGDDPALIEAEQWLEAIEKNTDPVVKPEQ
                     ALVVTQILEAIYESSKTGQPVYFN"
     gene            2132..2872
                     /locus_tag="IBJ56_001960"
     CDS             2132..2872
                     /locus_tag="IBJ56_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HAM3418211.1"
                     /translation="MKAKIALQLWSVKEACEDDFFGTLEKVAEMGYDGVEFAGYYGKS
                     ASEIKAKLAELGLEVAGSHISKEQLEADLENVILFERELGNEYIICPYADFKTKQEWL
                     EFGGRLREITTTIQQAGMHFGYHNHAHELDKLDDEIILDSLLKNVPEMVAELDTYWIE
                     YAGIGVIPFIEKYRNRVPLIHIKDKSRANKESTIIGEGVLDVPGFVKTALQSGTTWLI
                     IEQEAFTQDQLTSVAKGYTYLANVLEEN"
     gene            2874..3596
                     /locus_tag="IBJ56_001961"
     CDS             2874..3596
                     /locus_tag="IBJ56_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose utilization protein ThuA"
                     /protein_id="HAM3418212.1"
                     /translation="MTRVTVWNEFLHEKEDDAVLAIYPDGIHGQIASFLEKAGIEAGT
                     ATLEEPEHGLTEEVLANTDVLIWWGHMGHDRVEDRIVDRVQKRVLEGMGLVVLHSGHM
                     SKIFMRLMGTSCDLKWREANERERLWVVDPTHPIAKGIGEFIELDEEEMYGEHFDIPT
                     PDELIFLGWFEGGEVFRSGITYKRGNGRIFYFQPGHESYPTYHHPDIQQVIINGVHWC
                     AEGRKNYPAYGNHQPLEKIGRK"
     gene            3599..4567
                     /locus_tag="IBJ56_001962"
     CDS             3599..4567
                     /locus_tag="IBJ56_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HAM3418213.1"
                     /translation="MKLGVFTPLFANLSLDEMLDKVKAAGLDAVEIGTGGNPGNHHCP
                     TDELLASEAARKEYLEKFTSRGLTISAFSCHDNPISPNKEEAAASDEILRKSIKLASL
                     MNVPVVNTFSGTAGDSDDAKAPNWPVIPWPTVYSDIKTWQWETKLIPYWKEIGELAAA
                     SGVKIGIELHGGFLCHTPYTILKLREETNDAIGVNLDPSHLWWQGIDPVGAIKILGKA
                     GAIHHFHAKDTYLDQDNINMYGLTDMQPYGDVQTRSWTFRSVGCGHSLTEWSDIMSAL
                     RTYGYDYVVSIEHEDPLMSIDEGFDRAVTNLQSILIKDKPLDMWWA"
     gene            4590..5639
                     /locus_tag="IBJ56_001963"
     CDS             4590..5639
                     /locus_tag="IBJ56_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAM3418214.1"
                     /translation="MKKYQLVIIGYGGMGSYHVTLASAANNLEVHGVFDILAEKREAA
                     AQKGLKIYESFEAVLADEKVDAVLIATPNDSHKELAITALEAGKHVVCEKPVTMTSED
                     LLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGD
                     WRHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFEN
                     GITAQIEVGTTNFIKLPRWYVKGTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQ
                     GLTKTMAPPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSEPIVQNEEVYQVLKLIE
                     AIFEAAETNRTIHSI"
     gene            5733..5918
                     /locus_tag="IBJ56_001964"
     CDS             5733..5918
                     /locus_tag="IBJ56_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HAM3418215.1"
                     /translation="MSEDKGMKDKAKGLKDKVVGDAKDKFGKATDDKGKQVEGKAQKA
                     KGEVEDKTGDAKKKLSE"
     gene            6049..7950
                     /locus_tag="IBJ56_001965"
     CDS             6049..7950
                     /locus_tag="IBJ56_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAM3418216.1"
                     /translation="MTKKVLPKEASEFTKKVNEKVKKALPFENTKDFEDAKKGFIGTW
                     DHVKVDTEDGHAVWDLDDYKFIEGEAPDSVNPSLWRIAQLNMTNGLFKVTDRVYQVRG
                     FDMSNTTIMEGDTGLVITDTLMSVETARAALELYFEHRPKKPIKAIIYTHSHADHYGG
                     VAGLISKEDVTSGKVALIGPEGFMEAAVSENIFAGNAMIRRAEFMYGSRLSRGELGQV
                     DAGLGKTASKGHMSLLAPNDTITFDHEKRVVDGIEVEFLMAPNTEAPSEHMMYFPQFK
                     LLNIAEDAVHNLHNILTLRGAQIRDAYEWWKDIDKAIRAFGDKYEVCIGQHHWPTWGN
                     EEINDMLIHQRDAYKYMHDQTLHFINKGLTAIEVAEAVKFPPELEEKWYLRGYYGTLN
                     HDVKAIYQFYLGWYNGNPADLYPLPPEDVAKKYVEFMGGVDEVVKKARVSYEAGEYRW
                     VAEVVKHAVFADGENGEARALLADALEQLGYQSESGPWRNVFLAGADELRNSVPDEVI
                     SGVTLDIVEGMPFNLILDYMGIRLNGERSIGKRISMNWKLTDVDENYHLLVNNSVLIY
                     REGEVDDKADLTLTTTRDTFNHIFGGVKSFEAAFADQTAKLEGDAKKFGEFASLLDEF
                     NPVFNIVTP"
     gene            complement(8004..8345)
                     /locus_tag="IBJ56_001966"
     CDS             complement(8004..8345)
                     /locus_tag="IBJ56_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HAM3418217.1"
                     /translation="MFTKKRGLILLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGK
                     PVQKNQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIKN
                     VPDKIKYLAEK"
BASE COUNT         2816 a         1384 c         1908 g         2389 t
ORIGIN      
        1 aatcattaat tttataaact taagaagata gtttaacggc tgtcttcttt tttatgctaa
       61 aatgaaagaa aaaaaggagt ttcactatga gcgaatactt ggaaattcca gaattaaata
      121 aagcttttcc ttttcgttcg tttattaatg aaggggaagt tcttgtttat ccacactggc
      181 acaaagagat tgaaattatt tatgcgctaa aaggtagcct taatcttggc gttaatgata
      241 tgccaattca attaaaagaa ggagaaattc aagtaataaa tggcggagat gtgcattatt
      301 ttttagcttc gccgagtagt gagcgcatcg ttatccaatt tgatttaagt ttatttcaag
      361 aagaaatgca aatggatggc caaatgcaaa cgttgcgcga aatgcttaca gaaatggcac
      421 atttgagcag ggaatggcca gaagagacgg ttgctaaaat gcaatcttta attatgaata
      481 tccattctga gtcaagcggg gaaaagcctg ggaagcatta tattctaaaa gcagacctac
      541 tagcgattat cggcttgata taccgggaaa ttcctcaaat caaaactcaa cccgatagtg
      601 tgatttcaga agatgcagtc ttaaaatctc aagaaacatt acataaatta gatcaaattt
      661 tttcctatgt cgagaaacac tatcaagaac cggtcagctt acaagaagta gctgattaca
      721 ctggatttag cacgtactat ttcacaaaat ttttcaagcg aaatactggt atgacgtttg
      781 tgactttttt aaatgattac cgcctgaata aagcaaaatg gatgttgtta aatgaagctt
      841 tccctgttac agaagtggcc gaactagcag gatttagcag tgtaaaaacc tttcatcatg
      901 cctttaaacg agcaatgggt gtagcaccat taaaatacag aaagacaata tacgggaata
      961 attaagcaat aaaataggaa gatttacctc tagtagtttt gtatgatgta actatcaaaa
     1021 ctattggagg ttttttatta tgacattaaa agttggaatt ataggttgtg gaggcattgc
     1081 aaacgggaag catatgccaa gtttattaaa agctgagaaa gcagaaatgg ttgctttttg
     1141 cgatatcgtt ttagaaaaag cggaagccgc agcaaaagaa tttggtagtg aaaatgcaag
     1201 cgtatacaca agctatatag aattactcca agataaatcc atcgatgtca tccatgtttg
     1261 tacaccaaat atttctcatg cagaaatttc tattgcggct atggaagctg gaaagcatgt
     1321 tatgtgcgag aaaccaatgg caaaaacaac cgaagaagcg aaaagcatga ttgaagctgc
     1381 taatcgtaca ggaaaaaaac taacaattgg ttaccaaaat agattccgca aagactcgga
     1441 ttacttgcac caagtgtgcg agaacggcga actaggcgat atctattatg caaaagcaaa
     1501 agcgattcgt cgccgagctg taccaacttg gggtgtgttt ttagatgaag aagcgcaggg
     1561 tggcggacca cttattgata ttggaacaca tgcgcttgat ttaacgcttt ggatgatgga
     1621 caattataaa ccgaaatatg tagtaggaaa cagttatcat aaacttgcca aaaaagaaaa
     1681 tgcagcaaat gcatggggct catgggatcc aaataaattt actgtagaag attccgcgtt
     1741 tggttttatc acaatggaaa acggcgcgac gatagtatta gaagcaagtt gggcgcttaa
     1801 cacactcgat gtcggtgaag caagaacgtc tctatcggga acagaaggcg gcgcagatat
     1861 ggaagacggt ttacgaatta acggcgaagc gcacagccaa atgtatgaaa agaaaattca
     1921 attagaagca ggcggcgttg atttttatga tggaactggt gatgacccag cgttaatcga
     1981 agcagaacaa tggttagaag caattgaaaa aaatacagat cctgttgtaa aaccagaaca
     2041 agcacttgtt gtaacacaaa tcttagaagc tatttatgaa tcatcgaaaa caggacaacc
     2101 agtttatttt aattaaggag gaagtgcctt tatgaaagca aaaattgcgt tacagttgtg
     2161 gagtgttaag gaagcttgtg aagatgattt ctttggaacg ttagaaaaag tggcggaaat
     2221 gggttatgac ggtgtggagt ttgctggtta ttacggtaaa tccgctagtg aaattaaagc
     2281 gaaattggct gaactcggac tagaagtagc aggatctcat attagtaaag aacagcttga
     2341 agcagactta gaaaatgtca ttttgttcga acgcgaattg ggaaatgaat atattatttg
     2401 cccatatgca gattttaaaa cgaagcaaga atggcttgaa ttcggcggca gacttcgtga
     2461 aattacaaca actattcaac aagctgggat gcattttggt tatcataatc atgctcacga
     2521 attagataaa ttagatgacg aaattatttt ggacagttta cttaaaaatg taccagagat
     2581 ggttgcagaa ttagacactt actggattga gtatgcggga attggggtta ttccttttat
     2641 cgaaaaatat cgtaaccggg taccactaat tcatattaaa gataaatcga gagcaaacaa
     2701 ggaaagcact attatcggtg aaggtgtttt ggatgtgcct ggttttgtta aaacggcgct
     2761 tcaatctgga acaacctggc tgattattga acaagaagca tttacgcaag atcagctaac
     2821 aagtgtggcc aaaggttata cgtatttagc gaatgtattg gaggagaact aatatgacac
     2881 gtgtaacagt atggaatgaa tttttacatg aaaaagaaga tgatgctgtg ttggctattt
     2941 atccggatgg aattcatggg caaatcgcta gctttctaga aaaagcaggc attgaggcag
     3001 gcacagctac tttagaagaa ccagaacatg gccttactga agaagtatta gcgaatacgg
     3061 atgtactgat ttggtgggga cacatggggc atgaccgcgt agaagataga attgtcgatc
     3121 gtgtgcaaaa acgcgtgtta gaaggcatgg gacttgtcgt actacattct ggtcatatgt
     3181 cgaaaatctt tatgcgccta atgggaacaa gctgtgattt aaaatggcgt gaagcaaatg
     3241 aaagagagcg cctttgggta gttgacccga cgcatccgat tgcaaaaggg attggtgaat
     3301 ttatcgagtt ggacgaggaa gaaatgtacg gcgagcattt tgatatcccg acacctgatg
     3361 aactaatttt cttaggttgg tttgaaggcg gcgaagtttt ccgaagcggg attacctaca
     3421 aacgaggaaa tggtcggatt ttctacttcc aaccaggcca tgaatcctat ccaacctatc
     3481 accatccgga tattcagcaa gtaattatta acggcgtaca ttggtgcgcg gaaggtcgga
     3541 agaattatcc ggcatacgga aatcaccaac cacttgaaaa aatagggagg aaataaacat
     3601 gaaattaggc gtatttacac cattatttgc aaatttatca ttggatgaaa tgttagataa
     3661 agtaaaggcg gcaggacttg atgctgtcga aatcgggacg ggcgggaacc ctggaaatca
     3721 tcactgtcca accgatgaac ttttagcgag tgaagccgcg cggaaggaat atttagaaaa
     3781 atttactagt cgaggattaa caattagtgc ttttagttgc cacgataacc cgatttctcc
     3841 taataaagag gaagcggctg catctgatga aattttgcgc aaatcaatca aactagcctc
     3901 tttaatgaat gttccggttg ttaatacatt ttcgggaaca gcgggagata gtgacgatgc
     3961 caaagcgccg aactggccgg ttattccttg gccaactgtt tatagcgata ttaaaacttg
     4021 gcaatgggaa acaaaattaa tcccttactg gaaagaaatt ggcgaacttg cagcagccag
     4081 tggcgttaaa attggtattg aactgcatgg tggtttctta tgccatacgc catataccat
     4141 tttaaaactg cgggaagaaa caaatgatgc tatcggggtt aatttagacc caagtcattt
     4201 gtggtggcaa ggaattgacc cagttggcgc tatcaaaatc ttaggaaaag ctggagcgat
     4261 tcatcatttc catgctaaag atacgtattt agatcaagat aatattaata tgtacggttt
     4321 aacggatatg caaccatatg gtgatgtaca aacgagaagt tggacattcc gttcggttgg
     4381 ttgtgggcac agtttgacag aatggtcgga cattatgagc gcgcttagaa catatggtta
     4441 tgattatgta gtcagcatcg agcacgaaga tccattaatg tcgattgatg aaggattcga
     4501 ccgtgctgtt acaaacttac aatcgatttt aattaaagat aaaccactgg atatgtggtg
     4561 ggcttaacga taagaaaggg tgtcttagga tgaaaaaata tcaattagta attattggtt
     4621 acggcgggat gggaagctat catgtaacgc ttgcatcggc tgctaataat ttggaagttc
     4681 acggtgtatt cgacattcta gcagaaaaac gtgaagccgc tgcccaaaaa ggtttgaaaa
     4741 tctatgaaag ttttgaagcg gttttagcgg atgaaaaagt agatgcagtt cttatcgcga
     4801 caccgaatga tagccataaa gaactggcga ttactgcact tgaagcaggc aagcatgttg
     4861 tttgcgagaa accagtgaca atgacaagcg aagatttact agcaattatg gacgtggcta
     4921 aaagagtaaa taaacatttt atggtgcatc aaaatagacg ttgggacgaa gatttcctga
     4981 ttattaaaga aatgtttgaa caaaaaacga tcggtgaaat gttccactta gaatcacgtg
     5041 tccacggagc aaatggtatt ccaggagatt ggcgtcattt gaaagcacat ggcggcggga
     5101 tggtacttga ttggggtgtg catctacttg accaattgtt attcctagta gatagtaacg
     5161 tgaaatctgt atctgctaat ctaagttttg cgcttgggga tgaagtcgat gatggcttcg
     5221 tcacgttcat tactttcgaa aatggcatta ccgctcaaat tgaggtaggc acaacgaact
     5281 tcattaaatt acctcgctgg tatgtcaaag gtacagaagg aactggaatt atccacgact
     5341 gggatttaag cggggaaatc gtcaaaccaa ccgcactcgc taaaacgtct gagccaacgc
     5401 caattaaagc agggcaaggg cttacaaaaa caatggcacc accaagcgaa gaagcaacca
     5461 atacattatc gcttccagca cctgccaaat tagctccatc tttttataat aattttgtcg
     5521 atgttttaaa taatacgagt gaaccaatcg ttcaaaatga agaagtttat caagttttaa
     5581 aattgattga agccatattt gaagcggctg agacaaatcg aactatccat tctatttaaa
     5641 aaagatgttt tagcttccta aactgtggaa aacactacta tggagataaa gaattcttca
     5701 ttagaaaata ttctaattag gaggcaatat caatgagcga agataaaggc atgaaagaca
     5761 aagcaaaagg acttaaagac aaagtagtag gtgacgcaaa agacaagttc ggtaaagcaa
     5821 cagatgataa aggcaaacaa gtagaaggta aagctcaaaa agctaaaggc gaagtagaag
     5881 ataaaactgg cgacgctaaa aagaaattat ccgaataagt taaaaagagc ggcttgaatt
     5941 tttcaagccg ctcttttttt ggtccaataa tagcaaaagg ttttgaataa ttttacggag
     6001 gtataaaaag aaagtatgtg aaaataaacg tgcaggagga aaccgataat gacaaaaaaa
     6061 gtcttaccaa aagaagcgtc tgaatttaca aagaaagtga atgagaaagt aaaaaaagct
     6121 ttaccatttg agaacacgaa agattttgaa gatgcaaaga aaggctttat tggcacttgg
     6181 gatcatgtaa aagttgatac ggaagatggc catgcagttt gggatttgga tgattataag
     6241 tttatcgaag gagaagcacc tgattctgtt aacccaagtt tgtggcgtat cgctcaactt
     6301 aatatgacaa atggtttatt caaagtaacg gaccgggttt atcaagtacg cggctttgat
     6361 atgtcgaata cgacgattat ggaaggcgat actggccttg tcattacaga tacattaatg
     6421 tcggttgaaa ctgcccgtgc ggcgcttgaa ttatactttg agcatcgtcc gaaaaaacct
     6481 attaaggcga ttatttatac gcattcccat gccgatcatt acggcggtgt agcgggtcta
     6541 attagcaaag aagatgtaac ctctggaaaa gtggcactta ttggacctga aggctttatg
     6601 gaagcggcgg tcagcgaaaa tatttttgct ggaaatgcaa tgattcgtcg tgcggaattt
     6661 atgtatggta gccgtttgtc acgcggggaa ttaggtcaag tggatgcagg acttggtaaa
     6721 acagcgtcca aaggccacat gtccttactt gctccaaatg atactattac gtttgatcat
     6781 gaaaaacgcg tggttgatgg gattgaagtg gaattcttaa tggcgccgaa tacagaagct
     6841 ccatcagaac atatgatgta tttcccgcaa tttaaactac ttaatattgc agaagatgct
     6901 gttcataact tgcataacat tttaacatta cgtggtgcgc aaattcgtga cgcttacgag
     6961 tggtggaaag atattgacaa agcgattcgt gcgtttggtg ataaatatga agtttgtatc
     7021 ggtcaacatc actggccaac gtggggtaat gaagagatta atgacatgct tattcaccaa
     7081 cgtgacgctt ataaatatat gcatgaccaa acgcttcatt ttattaataa aggattaact
     7141 gccattgaag tggctgaagc tgtgaaattc cctcctgaac tagaagaaaa atggtattta
     7201 cgaggatact acggcacgct taaccatgat gttaaagcga tttatcaatt ttatcttggt
     7261 tggtataacg gaaatcctgc tgacctttat ccgctacctc cagaagatgt ggcgaaaaaa
     7321 tacgtcgagt tcatgggtgg cgttgatgaa gtagtgaaaa aagcgcgtgt atcctatgaa
     7381 gcgggtgaat atcgctgggt tgcggaagtt gtcaaacatg cggttttcgc agacggagaa
     7441 aacggagaag caagagctct tcttgcagat gcgttagaac aacttggcta tcaatctgag
     7501 tccggaccat ggcgtaatgt atttttagcc ggagcagacg aactgagaaa ttctgtccca
     7561 gatgaagtta tttctggtgt tacactggat attgtagaag gtatgccgtt taacttgatt
     7621 ttagattaca tgggtattcg tttaaatggg gaaagatcca tcggtaaacg tatctccatg
     7681 aactggaaat taacagatgt tgatgagaat tatcatttac ttgtaaataa ttccgtactt
     7741 atttatcgtg aaggtgaagt agacgataaa gctgatttaa ctttaactac tactcgtgat
     7801 acatttaatc atattttcgg tggtgtgaaa agctttgaag cagcatttgc tgaccaaaca
     7861 gctaaattag aaggagacgc gaagaaattt ggggagtttg cttccttgtt agatgaattt
     7921 aatcctgtct tcaatattgt tacaccttaa taaaaacaaa aaacgctttg tttagccttt
     7981 tatcaggcta taacaaagcg tttttatttt tcagctaaat atttaatttt atctggtacg
     8041 tttttgattt ttttataatt aacaaccatt ttgttctcgc caacaagtac tttgaattgc
     8101 tcgttcttag ttaattcttt ttctgagtag aaagttagtt gtttttgttt tcctttgtca
     8161 tcataaacat tcgatacata tttgaaccct ttgaattgat ttttttgaac gggttttcct
     8221 gcgtcttcta cttttacgta ataggatttc actgcggcgt cagttggcat cgcatactcc
     8281 caaatcgcgc aaacagttag aagaactgca gctaataata ttaaacctct ttttttagta
     8341 aacatttctc cttcatcctt tcttgatttg ttttattaca ttaagtttac aatggaatga
     8401 caaaattatc ccgtttgtta actaacaaaa tccagcgtta atcttacatt tttgtcagaa
     8461 aggtaacaaa agtgagttta aaagattgtg aagttac
//
LOCUS       DABQVC010000121         8496 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.121,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000121 DABQVC010000000
VERSION     DABQVC010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8496
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.121"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..335)
                     /locus_tag="IBJ56_001967"
     CDS             complement(<1..335)
                     /locus_tag="IBJ56_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418218.1"
                     /translation="MKNTVHDSEILSYHADFENSQLIMFVKDEENRKYKVIFEGLLTF
                     CFEHQMSNSIILDIVKGEVSSFISEKSILLSEGKNYFWPLDYESEDELLNYLNEKKLN
                     YYELQASYG"
     gene            complement(348..1649)
                     /locus_tag="IBJ56_001968"
     CDS             complement(348..1649)
                     /locus_tag="IBJ56_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418219.1"
                     /translation="MSRIDIGEIQDFAFQLRAANQTGRKIIQGVKTTVTNYVEDGSLK
                     GKAVEASKNYFQMTYIPLCDTIIEAMNESEERLKRYIQDFHDQVDLSPNAKIDADGLY
                     ELGQMIDRIESKKEALYQRMNSSTEGQMQTYRSQLATAYKQENILEKYLAFEQSHGAF
                     FDHLTDLVQGIQQTVRELQSNIQFNSQTGSYDLSKLNFATVNRMRKTLGKASATDTTV
                     YNFASYSKVKQGVMWILSKDGKVDIKATEAYNTASFNGELPKESNQATEEGELLKATL
                     ESLKQNKDPITGQEISKAQSFGILTSLVFGYTTKGYQGKKLTISKNTLIKLRQADKTV
                     IERIKKTSRIDYEEIVKKGSKMPKHIIVENKQSLPGKAMPSSSADLLNPDGSVKQRRY
                     YDEKGRAKEDIDFNHSDDGTHEFPHRHEWDWDRKPPRKPSK"
     gene            complement(1646..2014)
                     /locus_tag="IBJ56_001969"
                     /pseudo
     CDS             complement(1646..2014)
                     /locus_tag="IBJ56_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765477.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair Rad50 ATPase"
     gene            complement(2141..2506)
                     /gene="isdG"
                     /locus_tag="IBJ56_001970"
     CDS             complement(2141..2506)
                     /gene="isdG"
                     /locus_tag="IBJ56_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme oxygenase IsdG"
                     /protein_id="HAM3418220.1"
                     /translation="MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGF
                     ELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVG
                     NAIARFEVVHVQNPVIVEK"
     gene            complement(2664..3143)
                     /locus_tag="IBJ56_001971"
     CDS             complement(2664..3143)
                     /locus_tag="IBJ56_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAM3418221.1"
                     /translation="MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDA
                     ERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSV
                     GPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE"
     gene            complement(3233..4336)
                     /gene="rlmN"
                     /locus_tag="IBJ56_001972"
     CDS             complement(3233..4336)
                     /gene="rlmN"
                     /locus_tag="IBJ56_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HAM3418222.1"
                     /translation="MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFE
                     EMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGL
                     SVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVV
                     MGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAI
                     SLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEAL
                     ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHG
                     TDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE"
     gene            complement(4487..6187)
                     /locus_tag="IBJ56_001973"
     CDS             complement(4487..6187)
                     /locus_tag="IBJ56_001973"
                     /EC_number="4.2.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oleate hydratase"
                     /protein_id="HAM3418223.1"
                     /translation="MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKAR
                     YYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFV
                     CRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNI
                     LDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWFMWQTTFAFQKW
                     SSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTV
                     EDIDFKDAPGITATALHLSDGSTIKLGPDDDVIMTNACMTDSATLGDMNTPAPKPEEK
                     PISGELWYKVAQKKPNLGNPEPFFGHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGS
                     GALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEE
                     ILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAM
                     ISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
                     "
     gene            complement(6297..6857)
                     /locus_tag="IBJ56_001974"
     CDS             complement(6297..6857)
                     /locus_tag="IBJ56_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HAM3418224.1"
                     /translation="MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFY
                     YHFTDKYDLLTWTYENDFFHCLADGITLENWDKHVLKMLESIKENDDFYKNTVSADAS
                     ILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEA
                     PETIANQLFRLAKDTEFLANSMYREN"
     gene            complement(7183..7542)
                     /locus_tag="IBJ56_001975"
     CDS             complement(7183..7542)
                     /locus_tag="IBJ56_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3139 domain-containing protein"
                     /protein_id="HAM3418225.1"
                     /translation="MKKYKKWWITIGLVLIICIIGYIYWFAIPKHTANEAVDDYLAAQ
                     KINSTQVKTRDIQKDWTRGGYYVTIVFKDDPNLVYEYNYNSKRNTPYHINLLVFKDGS
                     SQEDDQVKHPPLQEQKD"
     gene            complement(7570..8397)
                     /locus_tag="IBJ56_001976"
     CDS             complement(7570..8397)
                     /locus_tag="IBJ56_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418226.1"
                     /translation="MKKRLIGIITALLLVSGILLSPQMAQAETKVDYDALYQQGVSEG
                     IINKADVSLETWIKENESEYNQVYQDGLKDGVYDASLSYEEWIKLNNYGQPPVVDENW
                     EEVPQKPMLKGVYKGYNIKKGDILITNGTSSSGLLGHAAIANGNEYILDIPGAGKTTR
                     QVPTSKWMSDYDPEGWVKVYRLKDSSVANAAANWADKNYYSTKGTSKQNIFPKYGMTG
                     SRYSKNPTYCSKIVLQAYYFGTGNKPVVQVFPSLVTVYDLPNYFSKAYKPQQVKYFK"
BASE COUNT         2231 a         1835 c         1429 g         3001 t
ORIGIN      
        1 aacccatatg aagcttgtaa ctcataataa tttaattttt tctcgtttaa ataatttagt
       61 agttcgtcct cactttcata atctagtggc caaaaatagt ttttgccttc agaaagtaaa
      121 attgacttct cacttataaa gctgctaacc tctcctttta ctatgtctaa aatgatacta
      181 ttagacattt ggtgttcaaa gcagaaagtt aaaagcccct caaatatgac tttatatttt
      241 ctgttttctt catccttaac aaacatgatt aattgagaat tctcaaaatc tgcatgataa
      301 gacaatattt cgctatcatg aactgtattt ttcataatta acactcctta tttagatggc
      361 tttcttggcg gttttctatc ccaatcccac tcatgtctat gtggaaattc gtgagttccg
      421 tcgtctgaat ggttaaaatc tatatcttct ttagctctgc ccttttcatc ataatatctt
      481 ctttgtttta cacttccatc aggatttaac aaatcagccg aggaactggg catagctttt
      541 cccggaagac tttgtttgtt ttccacgatg atgtgtttag gcattttact acctttttta
      601 acaatttctt catagtcaat tctgctagtt ttcttaatcc tttctataac cgttttatca
      661 gcttgtctca attttatcaa tgtatttttc gatattgtca gtttcttccc ttgataccct
      721 ttcgtcgtgt agccaaaaac aagtgaggtt aaaatcccaa aactttgagc tttgcttatt
      781 tcttgaccag ttatcggatc tttattttgc ttcagtgatt ctagtgtggc ttttaacaac
      841 tcgccttctt ccgtggcttg gttactttct tttggtagct caccgttaaa actggctgta
      901 ttataagcct ccgttgcttt aatatccact ttcccatctt ttgaaagaat ccacataacg
      961 ccttgtttta ctttgctata actcgcaaaa ttatagactg tcgtatcagt ggcactcgct
     1021 tttcctagcg tttttcgcat tcggttcaca gtggcaaaat ttaatttact taaatcatag
     1081 ctgcccgttt gactattaaa ctggatattt gattgtaact ctcgaacagt ttgctggata
     1141 ccttgcacta aatccgtcaa atggtcgaaa aaagccccat gactttgttc aaaagccaga
     1201 tatttctcta aaatattttc ttgcttatat gcggttgcta actgggaacg ataggtttgc
     1261 atttggcctt ctgtactgct gttcattcgt tggtacagtg cttctttttt gctttcaatg
     1321 cggtcaatca tttggccgag ttcatataaa ccatctgcat caattttagc attaggagaa
     1381 aggtctactt ggtcgtgaaa gtcttggata taccgcttca acctttcctc actctcattc
     1441 attgcctcga ttatcgtgtc gcagagtgga atgtatgtca tttgaaagta atttttggac
     1501 gcttccacgg ccttcccttt taaactacca tcttctacgt agtttgtcac ggtggttttg
     1561 acgccttgga tgatttttct tcctgtttgg ttggctgcgc gtagttggaa tgcaaaatct
     1621 tgtatttctc cgatgtcgat tcggctcact ggaacaactc cttttgtata tcttgttgtt
     1681 tactttccaa ttggtagatg tttttttggt atgtatttat tttttcttgg cgtttttctt
     1741 cctcagcttg aaaggtttgg caccatttat ttttctcgtc tgcttggagg tcttctaaat
     1801 agtagccgaa attgcgagct tgatcgcctt gccagacttc tctcatcaac tccaaagact
     1861 cgcgttcttc gtaacaaatc cgctcaaaat cttcttctag ccaaattcgc tcattttgtt
     1921 catgtttgag catatctaag gattattccg catctttttg ttgtttttgg agggtttgta
     1981 gttgttgttt caatttctcg ttgtttgaat ccacttaaat ccatccctgc ttttttattc
     2041 ttaatatacc gcataagata taaaaattca ataattatct gaaaattcga gcgcgcaaaa
     2101 aaacaagcca tctacctcga aacggcttgt tcattcactc ttatttttca acaatcacag
     2161 ggttttgcac gtgaaccact tcaaaacgag cgattgcatt tcctacgatg cctttgcggt
     2221 cttctctttg ttctctagtg tcttttgttc tgccgtgtgc ttttttgaag gaatcgcttt
     2281 tcacccaatt gcgttgggct tcttcgcttt cccatttgct tgttacgact acttcttcat
     2341 agtctttgtc ttctggtttg ctgtgccata gttcgaagcc taggaaacct tctacttctg
     2401 cgatatcttt tgttggatgt ccgtcgccat ttgcgcctgt gaactgacgg ataacgtgct
     2461 ctgctgcgcc tttttctacc ttaatcgtat tagttacaat aatcattctt aaatccccct
     2521 tggataattg tattgtatgt ataataggct agttccttcc attatattga taatgattct
     2581 caatgtcaat tttagggaat gggcttggag tgggatttaa aaagaacaaa tttcacaatc
     2641 aatgaaattt gttctttagt ttgctattct ttttcaacca ccggaatcca aacttccgaa
     2701 taataatcag cggcagttgt gtcaccttct gtgtagactt ctagttctgg agcgtttccg
     2761 tgcgcgtagt tgcttgtttg gaaccattcg ccgtaaatgt attcccacac tttttggatt
     2821 gcgcttggta gtgggccgac tgatttgaag atggcccatt tacttgctgg gatgattagt
     2881 ttttccatgt ctgctggtgg agtgagttcg gattcaatcg cgatataata gtccattttg
     2941 tcgccgttca ttttacaaac gcctaaaata ccatcaattg ttgcaaattc agctaattcg
     3001 ttgattcgtt cggcatcacc atttgtgttt gcttcttgcc aaaattggct gattttttct
     3061 ttttgcgcat cgttttcaac cgaaaaagtt cgttttttcc ccacagctgt aaaagcattt
     3121 cgttcgacaa tttctacttc catgattttt gtcctccttc aattgctttc ggtactttaa
     3181 gtataaacaa aaactatcca atctccaaat ggaaaccaga tagtttgaat tattattctt
     3241 ccgctgctgc ttgtttttgt ttcatccgtt cgcgcacgcc aactcgtttg atttgtttac
     3301 tacgaagttg cccacacgca gcatcaatat ctgtcccgtg ttcgcggcga ataacacaat
     3361 taataccatt tttcttcaat gtatcataga aagcgagtac gtcttctttt gtgctacgtt
     3421 cataatcgat atgctcatcc accgggttgt aaggaatcaa gttaacataa gctaaatggc
     3481 gatgttctcc gagaagtgcc gccagttcga gcgcttcttt tttgtggtcg tttacacctt
     3541 ttagcataat gtattcaaat gtgattcggc ggttagtttt gttaacgtaa taatggattg
     3601 cttccatcaa tttctcaatt gaataggtct tgttaatacg cataatactc gtccgcagtt
     3661 cattgttcgg cgcatggagg gaaatcgcta agttaacttg gaaatcctca ttggcaaaat
     3721 caataatgcg cggtgcaaga ccacttgtcg aaacagtgat atggcgcgcg ccgattgcga
     3781 ggcctttgtc atgattaatc acacgcaaga aatccatcac attatcgtaa ttatcaaacg
     3841 gttccccgat tcccattaca accacgtgac tcacgcgttc ttccaaatta cgtccatcca
     3901 aataatgctg cacattcata atttgttcca caatttcgcc agcggttaag tcgcgacttt
     3961 ttttcaaaag cccactcgca caaaaagtac agccgatatt acagccaact tgggtcgtta
     4021 cacaaaccga caagccatat tcttgcttca tcatcacggt ttcaattaag ttcccgtcac
     4081 tcagcttaaa taaatatttc gtcgtgccgt ctgtcgattc ttgtaccact tgttcttcta
     4141 aagtgttcat cacaaaattc gctgttaaaa gttcaattgt ttcttttgga acgttactca
     4201 tttcttcaaa agttttgaca cgttttctat aaagccagtc ccacacttgt gttgcgcgga
     4261 atttcttttg accgtgtgct tctagccatt ctgttaattt tgtccatgtt aatccataaa
     4321 tggagctttt ttccattgtt cagcctcttt tcaggtcttg ttttcgtcta taaagattat
     4381 agctgtttta tggttcacaa gcaatgctat ttcgtaaata tcagccgttt gtcctgtctc
     4441 gcacaaaaaa agtagctatt ctgtcacaaa tagctacttt ctcactttat ctaaacatgg
     4501 tttgggttgc tttcgctagc acttttggat cacgattatg tggtgttact gggcagattt
     4561 ttttgtcaat atcaagtaac gtatacacgg cgattctagc agcacgaacg gaatattctt
     4621 cggtgaaaac catatctttt ggaatttcca caaattggct aatcatcgca aagtttgtac
     4681 taccttctgg aacaacggcc ggacgatcac tcattgcccg tggttcaaat tgcgcatcga
     4741 tgtatggcat gtagcacgga attacattga taatatccgc tttaatttct tcaaaatcgt
     4801 cttgccagtt caaatgacac attaattcat ataaaatttc ttccccggta cattctttca
     4861 tcggtttttt cacgaaatca cccacgcggt ctggatataa tccgtaaccc cagaaaatcg
     4921 tagtgtttgc atcttgcgct ttaaaatgag gttgtgcggc aacaacagta ctcattaacc
     4981 aattagagtc tttgaaagtc atgagcgcac cacttcctgg aatgttccct gtgaagcgtt
     5041 caatgcgttt taataattta tcaccatgac aagtgacggt aaaactttgc cagtttgttt
     5101 cttcttcatg accaaaaaat ggctctggat tgcctaaatt tggtttcttt tgagcgactt
     5161 tgtaccaaag ctcaccagaa attggttttt cttcaggttt tggtgccggc gtattcatat
     5221 caccaagagt cgcgctatct gtcatacaag cattcgtcat aatcacatca tcatctgggc
     5281 caagtttgat agtggatcca tccgataaat gaagtgctgt cgctgtaatt ccaggcgcat
     5341 ctttgaaatc aatatcttcc accgtttgat taattgtaaa atcaacatgg tgtttatcta
     5401 aaaatgtttt taaaggtaaa atcaagcttt cgtattggtt tagaggggtt cttgttacac
     5461 cttccagcgt atcaatccga ctaaattcta acatcatccg attcatataa cgtctaaatt
     5521 caaacaagct gctccatttt tggaaagcaa aagtggtttg ccacataaac caaaaattcg
     5581 tttcaaaaaa gtgttcgtca aaccaatcac gtatcgttaa attatccagt ttttcttccg
     5641 gagtagcgag cagtttcgtc atcaacatcc ggtcattatt attaaatccc atcgaatgcg
     5701 catcgaggat attgcgatct ttatcaacta atctcgcttg cgcatgggtt ggatgtaaat
     5761 ggtcaaaatt caaaatctct tcagtaacac taaagttcgg catatcaagc gacggaatac
     5821 tactaaataa atcccagaaa ttttcataag tttcttcatt taacatccga ccaccgcgac
     5881 aaacaaagcc atgttccacg cttccggctc cgtcattact tccgcctaaa atatgcatac
     5941 cttcaataat atgaatattt ttcccatcaa aattggcatc acgaattaaa taaacagccc
     6001 ccgccaaact agcaatcccg ccaccgacga aatacacttg tttgtcgccg taatagcgcg
     6061 ccttaattgc ttcatccact gcccgttctt tttcagcggc cttttgttca gaaattttct
     6121 ttgcggcaat acctgttcca attgcagccc cagttagagc gactagcgta cgttttttat
     6181 ttttcatcac tatctcctcc aatttcttga tacagatagt atacctcgcc tcgttcgctt
     6241 ttaatctggg caaaagaacg cttatgtctg gtttttagac aaattagcca tattgtctag
     6301 ttttcgcggt acatgctgtt tgccaaaaat tccgtatcct tcgcaagtcg aaatagctgg
     6361 ttcgcaatcg tttccggtgc ctctttaaaa ccgcgcgtaa tccatttaat cagtacaccc
     6421 gagcatccgt aagaaaagaa ttccgcataa aatacccgat ctgcctcgtt caccgctcca
     6481 ttcgtatcaa ttttttcaaa taaatccata aacagcgaat tcgttaattt agaaaagcaa
     6541 aaagaaagga tactcgcatc cgccgaaacc gtgtttttat agaaatcatc attttcttta
     6601 atcgattcca gcattttcag cacatgctta tcccaatttt caagcgtaat cccatccgcc
     6661 aaacaatgga aaaagtcatt ttcatacgtc caagtaagca aatcgtattt atctgtaaaa
     6721 tgatagtaaa aagtttgccg attaagtcca caaatattcg taatatccgc aatactaatc
     6781 ttttcaaacc gcttatgctg acaaagctcc atcagcccac cagcaatcgc ttttttagta
     6841 atgagtgatt ccgccatggc atccgccccg tttcgtttgt ttgggttaat tgtatctcag
     6901 gtggggttgg aattgctagg gaaagcatgg gagaggttgg tgctttatta tctccttgaa
     6961 tgaaaatgat agattttagt tgaactaatc caaagctttt tggcttcccg gctagctcgc
     7021 gtgcattaag gtgtctcaag ttatttagta aattcacttt gggaccttag ccggcttgat
     7081 tattcgatcg gcgtgatact ttttatgtgg agcttatata aaagtaatac aaaaaagtaa
     7141 gcagtagtag cactgcttac ttaaaatgct tgggtttctg ctttaatcct tttgctcttg
     7201 tagtggtgga tgcttcactt ggtcatcttc ttgactcgag ccatctttaa aaacaagtag
     7261 attaatatgg taaggcgtat tccttttact attgtagttg tattcataca ctaaattagg
     7321 gtcatcctta aacactatcg tgacatagta tcctcctcta gtccaatctt tttgaatatc
     7381 cctcgtttta acttgcgttg aatttatctt ttgcgctgct aagtaatcat ctactgcttc
     7441 atttgctgta tgtttaggga ttgcaaacca ataaatatat ccgataatgc aaataattaa
     7501 cactaatcca atcgttatcc accacttttt atactttttc attcagcgac acttcctaat
     7561 acatgagatt tatttaaagt atttcacttg ttgtggctta tatgcttttg aaaaatagtt
     7621 tggtaaatca tacacagtaa ctaaggacgg aaatacttgc acaacaggct tatttcctgt
     7681 tccgaaataa taggcttgaa gtacaatttt agaacaataa gtagggttct tactatatcg
     7741 acttcctgtc ataccgtatt ttgggaaaat attttgtttg gatgtgcctt tggtggaata
     7801 atagtttttg tccgcccaat tggctgcggc attagcaaca gaactatcct tcaggcgata
     7861 aacttttacc catccttctg gatcataatc actcatccat ttacttgtag gtacttgcct
     7921 tgtcgttttt ccagccccag gaatatctaa tatatactca ttcccattcg caatagcagc
     7981 atgtcccaat aatccggaag aagatgttcc atttgtaatc agaatgtccc cttttttaat
     8041 attataacct ttatacacac ctttaagcat tggcttctgt ggaacttctt cccaattttc
     8101 atctactaca ggaggttgtc catagttgtt taactttatc cattcttcat acgacaatga
     8161 tgcatcatag acaccatctt ttaaaccatc ttgatagact tgattatact cactttcatt
     8221 ctcttttatc catgtttcta agcttacatc tgctttatta ataatccctt cagatactcc
     8281 ctgttgatac aatgcgtcat aatccacttt tgtttccgcc tgagccatct gcggagatag
     8341 caaaatccca cttactaaca ataatgctgt aataatacct attaaccttt ttttcattat
     8401 gctccctctt ttctatgcat taatcaaata gttgttccta ctaaaaccat agcatagaaa
     8461 atgaatgtat aaccaaaaat gtaatgaaat gtccga
//
LOCUS       DABQVC010000122         8473 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.122,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000122 DABQVC010000000
VERSION     DABQVC010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8473
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.122"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..5547
                     /locus_tag="IBJ56_001977"
     CDS             <1..5547
                     /locus_tag="IBJ56_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5011 domain-containing protein"
                     /protein_id="HAM3418227.1"
                     /translation="SGNDATVTLNIPAYDGTAWANGDIKDVNVTVDFSNSTSTSKEVE
                     FTLPDGMRFVSIPVPSSFQVPTGVDSGVINRLSAGDPIGTAITSVTIPNKETTYDKAT
                     FGTVNYKLTPGTEKVSFNFSVRVDANKYYGATDLKAPIKVEAFVGDNKMAIASEEKAI
                     RAEGNKVVGYANQTHVSTMFRNWYKSFRTPDVLASTDDEDSYAYTKSYSVVNGMNQVD
                     ERGTNIFSPKNVSTTLYYPEGMEYVGVVNEKYALLNENANTTITHYPEENKVVFDFKQ
                     QNFKGVTDTVYAIKYKIPKGTPAGTYTAPKVPHAVITTYDDKVFESDALTNNSTDLTT
                     KATLDACRVVDSTENKMALIVGNKNINPDNETWAGNVRINNKDTAGTKTNQVFQIEFD
                     SNWEASIVNIPFDGNRKDNDITNIQYKTNFDDTYQTYNGNLPKNSMKNIAILEADAVG
                     LQPGEYFTEVKANVGDFSTGYTSYSESGGFGEESTNSYGIVKPGISSVQFKVSIWDEA
                     DEVNTKVSGTSVYSVADNITTAANGTANFYNEQGQVIKTAGAGDKFTTKATLVLFNYP
                     YGTRTVLNDPEVYLRQLDGTKILPSSIKLTDQDGEEIEFSIKIETAKNGEKVYVLKTK
                     DATVGRYVGYPSKHKFLNISYDTTIDVTLDKSLHTDIQQLLAWGGPNVKVATAANTFM
                     DTGLDVNQNGIENERLLSANSSTLSVPKQDAVTVETFLNLAGEGAKASYVEGDDSTVS
                     YFTPGTEADYTVRVTNTSTGIASAFELYIPIPKTGQNFGSKFQTETFKWDMKLNDAVQ
                     LTDEQKAQFDISYATEANKNNYESESVYSAVPSDYGKVNMVRIKVKTKIDPGETQTIK
                     VPLKVDETFNSATEGNKISERDVYNPYYRVTTNAYSGTLPGTKVGAELIILEASGFLF
                     QDKDANGLYEKAQGDTALANETVELYKWNENTSNYEPFLKNGEPVSVKTNADGKYTFN
                     YNLNLSYGKYAVKFPERAGNQFTLKQVGQDNTINSTVSNKGTDKGWVKEIDPAQPVSQ
                     NINAGYMEYAPDNDLKVNLSAKIVQAGKSLKVTLPKVRATSGEAVEDTIEPSFFHNIQ
                     AITDGYKWTSNDTTLATTQTANDGSGIIVGISAGNKAIATTDIGITIKDIFDTEKKST
                     APVYITEPSATIDQKEGLILGAMNFSLEYKDSNKLTETEAITLAKTASFEEVKTGVLS
                     TAQDCTSSVKVDAKQLKAIQEGSNQGGTYPLTYQVAKNGKTAEVVIQVKVEKDLTTVN
                     VHDSILYLGDTWTATDNFDSALNKVGETVPFGDIQVEGSVDTNTAGIYSVTYTYKGVS
                     KKAKIEVKENLTEINAHDSTIYTGDTWRAGDNFDSGLDKDGNALSLKDLTVIGTVNTN
                     LAGVYTITYKYEDTVSSITVTVKENKKGINGHDSSIYVGEAWTAADNFDNAVDKDGKP
                     VSFADIKVKEEPKVDVNKAGRYQITYNYDGASTTVTLTVKEIKTAINAHDSILYIDDN
                     WSAKDNFDSARDKDGNIVSFNDVQVLGTVDTSQAGTYPITYVYAGITKTIQVIVKHPK
                     TAVRAHDSVIYVGDNWKAQDNWDNTLDKAGQKVKWKDITVKENPAVDVTKPGVYEVTY
                     SYDGISATINVTVKPRKTTVKIHDSSFYAGNSWNAKDNFDYATNKAGEKVAFKDITVA
                     GKVDSKTPGTYEISYVYDGVKAVAKVTVLKNHSILMVKDRVIKVGEKWNAKDSFIQAT
                     RRDGKNIPFSQVKVQGKVNLNKAGKYQVIYSVDPNEGTEDAGKQMLSVTATIQVENRG
                     DAGLQDNEPRSVKDNNQRAANSNDIKLIPKTGDQTNQWVLWAGLCLTGLAMLLWGFAL
                     RRRKVK"
     gene            complement(5611..5835)
                     /locus_tag="IBJ56_001978"
     CDS             complement(5611..5835)
                     /locus_tag="IBJ56_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HAM3418228.1"
                     /translation="MKYCLVEKDTCIACGACSIHAPDVFDYDTEGLAFNILDNNTGTK
                     VIPEDLVETVIDAEFACPSLSIKVSDSSFH"
     gene            5990..6997
                     /locus_tag="IBJ56_001979"
     CDS             5990..6997
                     /locus_tag="IBJ56_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418229.1"
                     /translation="MDKLDNYIMTILEKSITPRKLPFLHTVLAGRRTGQAVQDIHLFQ
                     MQHLFGLVPNLKASYLEKRISELVHQGSILSTENGYVTQGQLVAMFENDYPNFQGFTF
                     QGQAFAFFAHLRLAVQVVSNIHHHESYYLPVIRDKKVQQFIKHWVKHRDKSNLANQLY
                     GELVAWMNKLAVARPAFLVERFSGGELMGYTTEQIASKYQVEKWDVYFEVLHEVHRLL
                     IAMKKTPEEWPILASLVPDELNGLTSSAMQTYVLWQNGADLEAIERIRNLKKSTIHDH
                     FVEIRATLKEANVPYLPEETIIQTIITKKWNLLREIKAEFPDLDYYQIRLAVVSREGK
                     Q"
     gene            6994..8397
                     /locus_tag="IBJ56_001980"
     CDS             6994..8397
                     /locus_tag="IBJ56_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HAM3418230.1"
                     /translation="MNLEKELKEYLGFDEFRPGQKEVIETALAKRNCFAMLPTGTGKT
                     ICYQLAGHLMDGLVLIVSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQVLANI
                     HLYKFIFLSPEMLNNETVKNLLLKQRISLFVIDEAHCISQWGHDFRPDYLMLGKFIQE
                     AEFPVTMVLTATATKKVRADILTQLHLTDCVQIVYSVNRPNISLQVEKFSNQHVKKDR
                     LYALVRKLQTPGIIYFSSKKLAESIAHELSEIADLRVAYYHGDMDTEDRIIIQQQFVY
                     GQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAGRDGENSVAILLYAN
                     GDEFIQMQLADQDIPDANLMNLTNEQRKTLPETEQRFIEYYQRSGLSTKELTDKMDYR
                     KKWKRANLQQFIGYLHTTDCRRNYILRYFEETPLEVTPENCCDLDGAEIIDFEKRPIT
                     QQKEIPTWEAYLAYLLQ"
BASE COUNT         3032 a         1334 c         1712 g         2395 t
ORIGIN      
        1 tcaggtaatg atgctactgt cacattaaat attcctgctt atgatggtac tgcttgggca
       61 aatggcgata tcaaagatgt taatgttaca gtagacttta gtaatagtac atctactagt
      121 aaagaggtgg aattcacact gccagacggt atgagatttg tatcaattcc cgttcccagc
      181 agttttcaag taccaacagg tgtggactct ggggtgataa atcgtttaag tgcgggggac
      241 ccgattggta ctgcaataac atccgttact attccaaaca aagaaacaac ctacgataaa
      301 gctactttcg ggacagttaa ttataaactt actccaggaa ctgaaaaagt aagttttaac
      361 ttttctgttc gtgtagatgc taataaatac tatggtgcaa ctgatctaaa agcccctatt
      421 aaagtagaag cttttgtggg agataataaa atggcgattg cttcagaaga aaaagcaatt
      481 cgtgcagaag gaaataaagt ggttggttat gctaatcaaa cacatgtaag tactatgttc
      541 agaaattggt ataaatcttt tagaacacct gatgtattag cgagtacaga tgatgaagat
      601 tcttatgcat atacaaaaag ttactctgtt gtaaatggaa tgaatcaagt agatgaaaga
      661 ggaactaata tcttttcacc taagaatgtc tcgactaccc tttattatcc agaaggtatg
      721 gaatatgtcg gggtagtaaa tgaaaaatat gcacttttaa atgagaatgc taatactacg
      781 attactcatt atccggaaga gaataaagtg gtgttcgatt ttaaacaaca gaactttaaa
      841 ggagtaacag atacggtata tgcgataaaa tataaaatac caaaaggaac gccagcagga
      901 acatataccg ctcctaaagt gccacatgca gtcatcacga catatgacga taaagtattt
      961 gaatctgatg cattaacaaa caattctaca gatttaacaa ctaaggcaac gttagatgct
     1021 tgccgagttg tagattcgac cgaaaataaa atggcactaa tcgtgggaaa caaaaatatt
     1081 aatccagata atgaaacttg ggcagggaat gttcgaatta ataataaaga tactgccggg
     1141 acaaaaacta atcaagtctt ccaaattgaa tttgattcaa actgggaagc ttcaattgtt
     1201 aacatcccat ttgatgggaa tagaaaagat aatgatatca ctaatattca atacaaaact
     1261 aattttgatg atacttatca aacatacaat gggaatcttc ctaagaatag tatgaaaaat
     1321 attgctatct tagaagctga tgcagtcgga cttcaaccag gagaatactt tactgaggtg
     1381 aaagcgaatg taggcgattt ttctacagga tatacaagct actcagaatc tggtggtttt
     1441 ggtgaggaat caacaaactc ctatggtatt gttaaaccag gcatttcttc tgttcaattt
     1501 aaagtatcca tttgggatga ggcagatgaa gtaaatacga aagtctcggg tacttctgtt
     1561 tatagtgttg ccgataatat tacgacagcg gcgaacggaa cagctaattt ttataatgaa
     1621 caaggacaag taatcaaaac tgctggagct ggagataaat ttactacaaa agctacattg
     1681 gtattattta actatccata cgggacacgt acagtcctta atgatcctga agtgtatctt
     1741 cgtcaattgg atggtactaa aattcttccg tcttctatta agttaacgga tcaagatgga
     1801 gaagagattg agttctctat taaaatagaa accgccaaga atggagagaa agtgtatgtt
     1861 ttaaaaacaa aagatgcaac agttggtagg tatgttggtt atccttctaa acataaattt
     1921 ttaaatataa gttatgatac tacgattgat gtaacattag ataaaagtct tcatactgac
     1981 atccaacaac ttcttgcttg gggaggccca aatgtaaaag ttgctacagc tgcgaatact
     2041 ttcatggata caggtcttga tgtcaatcaa aatggaatag aaaatgaacg tctgctttct
     2101 gcgaatagca gtactttaag tgttccaaag caagatgcag tcacagtaga aacattctta
     2161 aatttggctg gagaaggagc aaaagcatct tatgtagaag gtgacgatag tacagtttcc
     2221 tattttacac caggaacgga agcggattat acagtccgtg ttacaaatac atctactggt
     2281 atagcaagtg cttttgaact ctatattcca attccaaaga ccggacaaaa ttttggttct
     2341 aaattccaaa cggagacatt taagtgggat atgaaactaa atgatgctgt gcaattaaca
     2401 gatgaacaaa aagcacaatt tgatattagt tatgcaacag aagcaaataa aaataactat
     2461 gaatcagaaa gtgtctatag cgctgttccc tctgattatg ggaaagtcaa catggttcgt
     2521 atcaaagtga agacaaagat tgatcccggt gaaacacaaa caatcaaagt tccactaaaa
     2581 gtagatgaaa cttttaattc tgctacagag ggaaataaaa taagtgaacg cgatgtatat
     2641 aacccttact atcgtgtaac tacgaatgct tattctggaa cattaccagg aactaaagtt
     2701 ggagcagaat taattatttt agaagcaagc ggttttcttt tccaagataa agatgcaaat
     2761 ggtttgtatg aaaaagctca aggagataca gcactcgcaa acgaaactgt tgaactttat
     2821 aaatggaatg aaaatacctc taactatgag ccgttcttga aaaatggtga gccagtcagc
     2881 gttaaaacta atgctgatgg aaaatacacc tttaattaca atttgaattt atcttacggg
     2941 aaatatgcag tgaagtttcc agaaagagct ggaaatcagt ttactttgaa acaagtgggg
     3001 caagataata cgataaatag tactgtatcc aataagggta cagacaaagg ttgggtaaaa
     3061 gaaattgatc cagctcaacc ggtatcacaa aacattaatg ctggttacat ggaatacgcg
     3121 ccggataatg atcttaaagt taatcttagc gccaaaatcg tacaagctgg taaaagttta
     3181 aaagtaacat tgccgaaagt aagagcaact agtggagaag cggtagaaga tacgattgaa
     3241 ccgtcgttct ttcacaatat tcaagcgatt acagatggtt acaaatggac tagcaatgat
     3301 acgactttag caactacaca aactgctaat gatggttctg gaataattgt tggtatttct
     3361 gccggaaaca aagcaatcgc aacaactgat attggtatta caatcaaaga tatttttgat
     3421 acagagaaaa aatctactgc acctgtatat ataactgagc caagtgctac gatagaccaa
     3481 aaagagggac ttatccttgg cgcaatgaat tttagtttag aatacaaaga ttcaaataag
     3541 ctaactgaaa cggaagcaat tactttagca aaaacagcta gttttgaaga agtgaagaca
     3601 ggtgtacttt ctactgcaca agattgtact agttccgtaa aagtggatgc caagcaatta
     3661 aaagctatcc aagaaggctc taaccaaggt ggaacttacc cgttgaccta tcaagttgct
     3721 aaaaatggga aaacagcgga agtagttatt caagtgaaag ttgaaaaaga tttaacaact
     3781 gtcaatgtac atgattctat tttgtatttg ggtgatacat ggacggcaac tgataacttt
     3841 gatagtgcgc taaacaaagt aggtgaaaca gttccatttg gagacatcca agtagaagga
     3901 tctgttgata ctaatacagc aggaatctat tcagtcacat atacgtacaa aggagtgtct
     3961 aaaaaagcta aaattgaagt taaagaaaat ttgacagaaa ttaatgcaca cgactcgaca
     4021 atttatactg gcgacacttg gcgagcaggt gataattttg acagtggact tgataaagat
     4081 ggcaatgcct tgagtctaaa agatttgacg gttattggaa cagtaaacac aaacctagca
     4141 ggcgtatata cgattacgta taagtatgaa gatactgtaa gttcaattac tgttactgta
     4201 aaagaaaata aaaaaggaat taatgggcat gactcgtcaa tctatgtagg agaagcatgg
     4261 acagcggcgg ataattttga taatgcagtt gataaagacg ggaagccagt ttcttttgct
     4321 gatataaaag tgaaagaaga gcctaaagta gatgtcaaca aagcaggcag atatcaaatc
     4381 acctataatt atgatggtgc ctcgactact gttactttaa ctgtgaaaga aatcaaaaca
     4441 gctattaatg cacatgattc tattctgtat attgatgata attggtcagc aaaagataat
     4501 tttgatagcg ctagggataa ggatggaaat atagtatcct ttaatgacgt acaagtcttg
     4561 ggaactgttg atacaagtca agcaggaaca tacccgatca catatgttta tgctggaatt
     4621 accaaaacca ttcaagtaat tgttaaacat cccaaaacag ctgtgcgagc ccatgattca
     4681 gtgatttatg ttggagataa ttggaaagct caagataatt gggacaatac gctcgataaa
     4741 gctggtcaaa aagtgaaatg gaaagatatt actgtcaaag aaaatcctgc cgtggatgta
     4801 acaaagccag gcgtctatga agttacctac agttatgacg gtatttctgc cacgattaat
     4861 gtaaccgtga aaccaagaaa aacgactgta aaaattcatg atagtagttt ttatgctgga
     4921 aatagttgga atgcgaaaga taattttgac tatgcaacga ataaagcagg tgaaaaagta
     4981 gcattcaaag atattactgt cgcaggtaaa gttgatagca aaacaccggg aacatatgaa
     5041 attagctatg tatacgatgg tgtgaaagct gttgctaagg tcactgtttt gaaaaaccat
     5101 tctattttga tggtgaaaga tcgtgtcata aaagtaggcg agaaatggaa cgcgaaagat
     5161 agctttattc aagcaactag acgtgatgga aaaaatattc cattttcaca agtaaaagtg
     5221 caaggaaaag taaatctgaa caaagcaggc aaataccaag ttatatattc agtagatcca
     5281 aatgaaggaa ctgaagacgc agggaaacaa atgttgtcag taactgctac tattcaggtt
     5341 gaaaatagag gagatgcggg gttacaagat aatgaaccac gaagcgtaaa agataacaat
     5401 caacgcgctg ctaactccaa cgatatcaaa ctcattccta aaacaggaga tcaaacaaat
     5461 cagtgggttt tatgggctgg cctttgtttg actggtttag caatgcttct atggggattt
     5521 gctctaagga gacgaaaagt gaaataatat ttattaaaaa taaaaaagga aggtttccaa
     5581 acagcggaaa ccttcctttt tcgtgtatta ttaatgaaat gaactatcgg aaactttgat
     5641 agaaagcgaa ggacaggcaa attctgcgtc aataaccgtt tcaaccaagt cttcggggat
     5701 tacttttgtt ccagtgttat tatctaatat attaaaggca agaccttctg tatcataatc
     5761 aaaaacatca ggtgcatgaa tggaacaagc gccacaagca atacaagtgt ctttttcgac
     5821 aagacaatac ttcaattttc tacgcttcct ttctaaaata actatttgca gccagatttt
     5881 ttctttttct attgtaccat attttgaaaa agtttttttc ggaaaaatta atgtagaaca
     5941 agtgtttctg tgttatgatt atggtacaaa aaaaggtggt ggacatgtct tggataagct
     6001 agataactat attatgacaa ttttagaaaa aagtatcaca cctagaaaat taccattttt
     6061 acatactgtt ttagctggaa gaagaactgg acaagctgtt caagatatcc atctttttca
     6121 aatgcaacat ttatttggac tagtgccaaa tttaaaagca agctatttag aaaaacgaat
     6181 ttcggaatta gtgcaccaag gtagcattct ttctactgaa aatggttatg tgacacaagg
     6241 gcaactagta gctatgtttg aaaatgatta cccaaacttc caaggtttta catttcaagg
     6301 gcaagctttt gctttttttg cccatttgcg actcgcagtt caagttgtta gtaacattca
     6361 tcatcatgaa agctattatt taccagttat tcgtgataag aaagtccaac aatttattaa
     6421 gcattgggtg aagcaccgag ataaatctaa tttagcgaat cagttatacg gtgaactcgt
     6481 tgcatggatg aataaattag cagttgctcg accagcgttt ttagtggaac gtttttctgg
     6541 gggcgaatta atgggctata ctacagaaca aattgcctca aaatatcaag tggagaagtg
     6601 ggacgtttat tttgaggtgc tccatgaggt tcaccgtttg cttatagcga tgaaaaaaac
     6661 ccccgaagaa tggccgattc tagctagtct tgtaccggat gagctcaatg ggttaactag
     6721 ttctgccatg caaacctatg tattatggca aaatggagct gatttagaag caatcgagcg
     6781 aattcggaat ttgaaaaaga gtaccatcca tgatcacttt gtagaaatcc gagctacttt
     6841 gaaagaagcg aatgttcctt atttaccaga agagacaatc atccaaacga ttattacaaa
     6901 gaaatggaat ttactgcgtg aaataaaagc ggagtttcct gatttggatt attatcaaat
     6961 tcggttagca gttgttagta gggagggtaa gcagtgaact tagaaaagga attaaaagaa
     7021 tatcttggtt ttgatgagtt ccgccctggc caaaaagaag taattgaaac agctttagca
     7081 aagcgaaatt gttttgctat gttacctact ggaacaggaa aaaccatttg ttatcaatta
     7141 gcgggtcatt tgatggatgg attagtattg attgtttctc cacttctctc ccttatgcaa
     7201 gatcaaatgg agcgaatgcg tgctcacgga gaaaagcgag tagcagcgct taatagcttt
     7261 ttaaaacgag aagaaaaagg gcaagtcctt gcaaacattc atttatataa atttattttt
     7321 ttatcaccag aaatgctaaa taatgaaacg gtgaaaaact tactattaaa acaaagaatc
     7381 agcttatttg tcatagatga agcgcattgc atttcgcagt ggggacatga ttttcgccct
     7441 gattatttga tgttaggtaa gttcattcaa gaagccgaat ttcctgtgac tatggtgctg
     7501 acagctacgg caaccaagaa agttagagca gatattttaa cgcaattaca tctaacggat
     7561 tgtgtgcaaa ttgtttattc tgttaatcga ccgaatattt ctttacaagt ggagaaattt
     7621 tctaaccagc atgtaaaaaa agaccgttta tatgcgcttg ttcgcaaact acaaacaccc
     7681 ggaattattt atttttctag taaaaaatta gcggaaagca ttgcgcatga attaagcgaa
     7741 attgctgatt taagagtagc ttattatcac ggggatatgg atacagaaga tagaattatt
     7801 attcagcaac aatttgttta cgggcagctg gatgttattt gcgccactag cgcatttgga
     7861 atggggatag ataaagctga cattcgctat gttattcatt atcatatgcc tgcagatttg
     7921 gaagcatatt tgcaagaaat tggtcgagca ggtcgtgatg gcgaaaacag tgtggcgatt
     7981 ctcttatacg cgaatggaga tgaattcatt caaatgcaat tagccgatca agatatccca
     8041 gatgccaact taatgaatct gacgaatgaa caacgcaaaa cgttacctga aacagagcaa
     8101 cgttttattg aatactacca aagaagtggt ttaagtacga aagaattaac cgacaaaatg
     8161 gattatcgaa aaaaatggaa gcgggctaat ttacaacaat ttattgggta tctgcataca
     8221 acggattgtc gccgtaatta tattctacga tactttgaag aaacgccgtt agaagtcacc
     8281 ccagaaaact gttgtgattt ggatggagca gaaataatcg attttgaaaa aagaccaata
     8341 acacagcaaa aagaaattcc aacatgggaa gcttatttag cttatttatt gcaatagttt
     8401 tgctgttacg aaatttgaca aaaactatat agtttcatat tttttgtgaa aaaaagactt
     8461 gtttaaaagt aaa
//
LOCUS       DABQVC010000123         8422 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.123,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000123 DABQVC010000000
VERSION     DABQVC010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8422
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.123"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..791
                     /locus_tag="IBJ56_001981"
     CDS             <1..791
                     /locus_tag="IBJ56_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418231.1"
                     /translation="NFEEWFRSGFWNDKYVCYSYIDNNEVISNVSINKMNLIYQGENY
                     SALQIGTVMTHPNYRGQGLAKNLLNHVIAKYEDQYDFLYLFANDTVLDFYPKFGFERI
                     EESSFTVDACNLKKKASKLKKLNPDNKTDFQLISRIVSKRASLSNILDVKESEDLLMF
                     YVLIALKNELYYLEELDVIVLMEQEGTDLYVLDILSTKKLDVVEVLSYLSTKKIETIH
                     LLFTPEKSKYIDAAYIIETEDMLFVRPNVLTSENYFLFPATSHA"
     gene            complement(782..1132)
                     /locus_tag="IBJ56_001982"
     CDS             complement(782..1132)
                     /locus_tag="IBJ56_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HAM3418232.1"
                     /translation="MEIQVEEAVVKLILHGGNTRKEAYKAIDFAEKYQFDEADKHLQI
                     AQDQFQEGHIWQTKLVSIRDSETVAHPSFLLIHGQDHLMTAQAELQLAKRIIKQYKHQ
                     QRIEERLTKLENQA"
     gene            1283..1474
                     /locus_tag="IBJ56_001983"
     CDS             1283..1474
                     /locus_tag="IBJ56_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418233.1"
                     /translation="MEERLYELEDKVQDLELEVHDLRDRIQLLEDKPAARSSLLGHNV
                     WVLIPLVAIISWMVVEIFS"
     gene            1471..1815
                     /locus_tag="IBJ56_001984"
     CDS             1471..1815
                     /locus_tag="IBJ56_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418234.1"
                     /translation="MKGTFNGFLFICNIVIFIQKITIKVSQFSSFLSLSQKIYIYLLA
                     FFKNNSKISYRIEFYLDESFIFINVIFMGIRPYHGYNDFWCIHLPIEWQLVRHLFRHQ
                     NHYLFSFISLAV"
     gene            1979..2500
                     /locus_tag="IBJ56_001985"
     CDS             1979..2500
                     /locus_tag="IBJ56_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HAM3418235.1"
                     /translation="MTLKGKKVIALVSEDFEDLELWYPVLRLREAGASVHLVAEEAKK
                     VYHGKYGVPVTSDYDFDSVRAEDYDGILVPGGWSPDKLRRFDSVLNLVRAFDKAKKPI
                     GQICHAGWVLVSAGILEGVNVTSTPGIKDDMTNAGAIWHNEPVVTDGHIISSRRPPDL
                     PEYLPAFISALED"
     gene            complement(2543..2809)
                     /locus_tag="IBJ56_001986"
     CDS             complement(2543..2809)
                     /locus_tag="IBJ56_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418236.1"
                     /translation="MFLKSLLAGVALAVVVFLASFLMPDYTVSTLYSIVTTIIVFASI
                     ILSAFVSFGGRSGNPSRKSQLRWSILLLVAAIPSFIGFIVTFYF"
     gene            complement(2922..4214)
                     /locus_tag="IBJ56_001987"
     CDS             complement(2922..4214)
                     /locus_tag="IBJ56_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAM3418237.1"
                     /translation="MFQLKANGTDVKTEVISGFTTFLTMVYIVVVNPAILSAAGVPFN
                     TVFMATIISAVIGTLWMAIFANYPIAIAPGLGMNAYFVTVVTTQKLDYSVAFAAVFVA
                     GIIFLLLSLTPLREKIIEAIPHNLKAGITAGIGLFIAFLGFRMTGIIVSNDSNLVGLG
                     DLHSKEAILAIVGLLITLILLALNVKGALFIGMIATGIIAFITGELKFTEGIVKLPPM
                     PEFVFTNPIHAFGDVMSYGLYAVVLSFLLITIFDTTGTMIGVAKKAGLMKGESLPNAK
                     QALMADAVATSVGSMFGTTPTSAYIESSAGVATGGRTGLTTLTVAILFMVSAFFAPLV
                     GAVSGISAITAPALIVVGSMMIGAVKEIDWDTLDEAFPAFLVILAMPLTSSIAIGLAF
                     GFISYPVLKVFTGKWRELNWFLIVIAVLFFILVAFLPH"
     gene            4387..5016
                     /locus_tag="IBJ56_001988"
     CDS             4387..5016
                     /locus_tag="IBJ56_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HAM3418238.1"
                     /translation="MKAVVFDFDGTMLDTENLWYTETMNYLKETYDIDLPDEIYQQII
                     GTSEEPIIRYMMEATNGAFDKEAFLTTVAEACHLGQQSLGFRDGFKEFFEQVKANDFK
                     IGLATSSGFDWIGPTLDRLGILADFETIQTADHVDEIKPHPALYLQAVEALGVKPEEA
                     IAIEDSKNGALSAMQAGLKVYIVPNEATKNITFPKEATVVSSFAEINLK"
     gene            complement(5060..6208)
                     /locus_tag="IBJ56_001989"
     CDS             complement(5060..6208)
                     /locus_tag="IBJ56_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HAM3418239.1"
                     /translation="MNNSKIAKKHQQMPVNILADIGTLAKTMPDILDLSIGDPDLITD
                     ESIINAAFEDVRAGHTKYTESGGDVELIDAIRGYFSRNYDLSFERSQIRATVGALHGM
                     YLTLQTILDDGDEVIIHEPYFSPYKDQVLNSGGTPIIIPTYEKDDFAINVDILEAAIT
                     DKTKALILNSPNNPTGAVFSPETFEKIANLAKKYDFFILSDEVYDGFSFYEDFVPMAK
                     FAPDHTITFGSMSKNFAMTGWRLGYMIAPTYLNEAAKIINEGITYSAPTPSQRAAIYA
                     LNHSETLIPLVTETFQKRLEYIAKRVEEIPYLSLHPLKGSIYAFINISKTNMDSVSFT
                     EYVLKETQVLVIPGLAFGESGDNYVRLAATQDISVLEEAFNRLAKLTF"
     gene            complement(6284..7009)
                     /locus_tag="IBJ56_001990"
     CDS             complement(6284..7009)
                     /locus_tag="IBJ56_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HAM3418240.1"
                     /translation="MIDIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFL
                     RCLNLLEQPTTGTILFENKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAP
                     MKVKNEDSAAAKKHALSLLEKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLF
                     DEPTSALDPEMVGEVLSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQG
                     TPEEVFGNPQNDRTKDFLGKVLA"
     gene            complement(7002..>8422)
                     /locus_tag="IBJ56_001991"
     CDS             complement(7002..>8422)
                     /locus_tag="IBJ56_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465774.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAM3418241.1"
                     /translation="VFIVVFSGFTTVFAADTEDQTLAKIQEKGVLTVGLSADYPPYEF
                     HQTIDGKDKVVGFDVSIAEKIAKDLDVKLEIKEMNFDSLLGSLKTGKIDMIISGMSPT
                     PERQKEVDFSDPYMFVQQRVVIRKTDKDKFTSVNDFSGVKVGAQKQTTQEELAQNELV
                     GSEVVSLQKVPDLILNLKSNKVDAVVLEGPVAEAYISQDKTLAMADIKFANGSKETAI
                     AMPKGSTALQEKVNASIKDIQDTGLLKKYQKEANKLMFQDGSFYEKYGNYFITGTLIT
                     IALAAIGVLCGAILGSLLALMKLAKTRWLRWPAACYIEFVRGTPLLIQIFIVFFGTQI
                     IGMDVSAFVSGCIALSLNSAAYVAEIIRAGISAVNKGQMEAARSLGMTQGASMRYIIL
                     PQAVKNILPALGNEFVTVIKESSIVSVIGVTELMFMTGVVQGASFKPFIPLIITSLIY
                     FVLTFSLSRLLGVAERRMRTSD"
BASE COUNT         2621 a         1483 c         1687 g         2631 t
ORIGIN      
        1 ttaattttga agaatggttt agaagcggtt tttggaatga caagtatgtt tgttattctt
       61 atatagataa taatgaagtt atctcgaacg tctccattaa caaaatgaat ttaatttatc
      121 aaggggaaaa ttatagtgcg ttacaaattg gaacagtaat gacgcatccg aattaccgtg
      181 gacagggtct tgctaagaat ttattaaatc atgtgatagc taagtatgaa gaccagtatg
      241 attttcttta tttatttgca aatgatactg tattggattt ttacccgaaa tttgggtttg
      301 aacgtataga ggaaagtagt tttactgtag atgcttgcaa tttgaaaaaa aaagctagta
      361 aattaaaaaa gctgaatccc gataataaaa cggattttca gctaattagt cgtattgtat
      421 ccaaaagagc atcactttct aacatattag atgtcaaaga aagtgaagat ttactgatgt
      481 tttatgtatt aattgcgtta aaaaacgagc tttattattt ggaagaatta gatgtaattg
      541 ttctgatgga acaggaaggt actgatctat atgtactgga tattcttagt acaaaaaaac
      601 tagatgtggt ggaagttcta agttatcttt ctaccaaaaa aatcgaaaca atccatcttc
      661 tttttacgcc agaaaaaagc aaatacattg atgcggctta tatcattgaa acggaagata
      721 tgttgtttgt gcgtccaaat gtgcttacaa gtgaaaatta cttcttattt ccagcgacct
      781 ctcacgcttg attttcaagt ttagtaagtc gttcttcgat acgttgttga tgtttgtatt
      841 gtttaatgat tcttttggca agttgcaatt ccgcttgtgc cgtcattaag tgatcctgcc
      901 catgaataag taaaaaggaa ggatgagcta ccgtttctga gtcgcgaatg gatactaatt
      961 ttgtttgcca aatatgacct tcttggaatt gatcctgtgc gatttgcaga tgtttatcgg
     1021 cttcatcaaa ttgatacttt tccgcaaaat caattgcttt gtatgcttct tttcgtgtgt
     1081 ttccgccatg caaaatgagt tttacaacag cttcttctac ttgaatttcc atttttccac
     1141 cccaacagtt gatagttttc tttcattgta gcaaatgcct gaacggtatg acaataaatt
     1201 agcaataaat cagcctatgg aacgatgtgt ttcatggagc ttagcgtata ataggcaata
     1261 gaaaaggtgt ggagggattc aaatggaaga acgtttatac gaacttgaag ataaagtaca
     1321 agaccttgag cttgaagtgc atgatttgcg tgatagaatt caactgctcg aagacaaacc
     1381 agctgctcgc tctagcttac ttggtcataa tgtatgggtc ttaattccat tagtcgctat
     1441 tatttcttgg atggttgtag aaatttttag ttgaagggga cctttaatgg tttccttttt
     1501 atttgtaata tagtaatttt tatacagaaa ataacaataa aagtaagcca gttctcatct
     1561 ttcttatctt tgtcacaaaa aatctatatt tatttacttg cttttttcaa gaacaatagt
     1621 aaaataagtt ataggataga gttttacctt gatgaaagtt tcatttttat taatgtgatt
     1681 ttcatgggga taagacccta tcatggttat aatgactttt ggtgtatcca tcttccaata
     1741 gaatggcaac tagtcagaca tctgtttaga caccaaaatc attatttgtt ttcattcatc
     1801 tcattggccg tgtagttcat gtctatgcct catcccgtta tgcatagacg cccgaacatg
     1861 atggcaacgc tggaaatgtt tatttcgagc gtcttttttt gtcttctttt ataggcggaa
     1921 taatttaata acaatctagt tattgttata ctgtagaaga ggataggagg agatttatat
     1981 gactttaaaa ggtaaaaaag ttattgcact tgtcagtgaa gactttgagg atttagagct
     2041 ttggtatcca gtgcttagat tgcgcgaggc aggagcttcg gtgcatctag tggctgagga
     2101 agcaaagaaa gtttatcacg gtaagtacgg agttcctgtt acttctgact atgattttga
     2161 ttctgttcgc gcagaagatt atgatgggat tttagttcca ggtggctggt ccccagacaa
     2221 attacgccgt tttgatagcg tactaaattt ggttcgtgcg tttgataagg cgaaaaaacc
     2281 aattggacaa atttgccatg ctggatgggt acttgtttcg gctggtattt tagaaggcgt
     2341 gaatgtaaca agtacaccgg gaattaaaga tgatatgacg aatgcgggag ctatttggca
     2401 taacgagcct gttgtaacag acggccatat tatttcgagt cgtcgcccac cagaccttcc
     2461 agaatattta ccagcattta tttccgcttt agaagattaa aaaaagaagc atttccatat
     2521 tttgggaatg cttcttttta gtttaaaagt aaaaagttac gataaagccg ataaaactag
     2581 gaattgctgc aactaaaagc aggatactcc agcgtaattg gctttttcga cttgggtttc
     2641 cactacggcc accaaaggat acgaatgcgg atagaataat ggatgcaaag acaatgatag
     2701 tcgttacaat ggaatataaa gtggatacag tgtagtcagg catcaaaaag cttgctagaa
     2761 aaacaacaac agcaagtgcg acaccagcga gcagtgattt taaaaacacg acaagttcaa
     2821 ctcatttcta attagtttct ctcttcttta tagcaaacga gcgggttttt gtccaataaa
     2881 aaagcgccta gctgagttca gtagacgctt ttattcattg attaatgtgg taaaaatgct
     2941 acgagaatga agaataatac ggcgataacg attaggaacc agttaagttc acgccattta
     3001 ccagtgaata cttttaatac tgggtaagaa ataaatccga atgctaagcc gattgcgatg
     3061 cttgaagtaa gtggcatagc tagaataact aagaaagcag ggaatgcttc atctaatgta
     3121 tcccagtcga tttctttaac agcaccaatc atcatactac caacaactat aagtgctggt
     3181 gcagtaatag cagaaattcc agagacagca ccaacaagtg gagcgaagaa tgctgatacc
     3241 atgaacagga tagcaactgt aagtgtagta agaccagtac gtccaccagt tgcaactcca
     3301 gcagaagatt caatgtaagc acttgttggc gttgtaccaa acatcgaacc aacacttgtt
     3361 gcaaccgcat cagccattaa ggcttgtttc gcatttggta atgactcacc tttcattagg
     3421 ccagcttttt ttgcaacccc gatcattgtt ccggttgtat caaaaatcgt tataagtaag
     3481 aaggacagga cgacagcata gagcccgtaa ctcatcacat caccaaaagc gtgaatagga
     3541 ttagtgaaga cgaattctgg cattggcgga agtttaacga taccttctgt aaatttcagt
     3601 tcaccagtga taaaagcaat gataccagtt gcaatcatcc caataaataa agcgcctttt
     3661 acgtttaaag caagcaagat taaagtgatt aaaagaccaa caatagctaa aatagcttct
     3721 ttggaatgta agtcacctaa acctactaag ttagaatcgt tagaaacaat aatgcctgtc
     3781 atacggaagc caaggaaagc gataaataaa ccaataccag cagtaatccc agcttttaaa
     3841 ttatgtggaa tagcttcaat gattttttca cgaagcggtg ttaaagataa taataagaaa
     3901 ataatacctg ctacaaagac cgcagcgaat gcgaccgaat aatctagttt ttgagttgta
     3961 actactgtga cgaagtaagc gttcatacca agtcctggcg caatcgcgat tggatagtta
     4021 gcgaaaattg ccatccataa tgtaccgatt actgctgaaa tgattgttgc catgaatacg
     4081 gtattgaatg gaacacctgc tgcggaaaga atggctgggt taactactac gatataaacc
     4141 atcgttagga atgtagtaaa accagagata acttccgttt taacatctgt accgtttgct
     4201 tttaattgaa acatgcgtgt gtttcactcc ttttttaaaa tcatgcttaa tggtaaataa
     4261 cgaacattaa aaaccacaaa tacaatatta ttcgtttttt actaaaaaag caaccctttt
     4321 tcgaagattt cttaaatagt ttatctatgt tacaatgaaa atatcactta tactaggagg
     4381 atgcatgtga aggcagttgt ttttgatttt gatggaacta tgcttgatac ggaaaattta
     4441 tggtatacag agacaatgaa ctatttgaaa gagacgtacg atattgattt accagatgaa
     4501 atttatcagc aaattatcgg tacaagtgaa gaaccaatta ttcgctatat gatggaagca
     4561 acgaacgggg cttttgataa agaagctttt ttaactactg tggcggaagc ttgtcatctt
     4621 ggtcaacaat cacttggctt tcgtgatggt tttaaagaat tttttgaaca agtaaaagcg
     4681 aatgatttta aaataggcct tgcaacgagt tcgggatttg actggattgg gcctacgctg
     4741 gatcgtctgg gcattttagc tgattttgag acgatacaaa cggcagacca tgtggatgaa
     4801 attaagccac atccggcact ttacttacaa gcagtagaag cgcttggggt taaaccagaa
     4861 gaagcaattg ctatagaaga ttccaaaaat ggtgcgctat cagcaatgca ggctgggtta
     4921 aaggtgtata tcgtaccgaa tgaagctaca aaaaacatca cttttccaaa agaggcgacg
     4981 gttgtttctt cttttgcaga aatcaattta aaatagaaaa aagagcaaac ttgcctatga
     5041 agcgagtttg ctctttttgt taaaaggtta atttggctag acggttaaat gcttcttcta
     5101 gcacgctaat gtcttgggtt gcagctaggc gaacataatt atcaccagat tcaccaaaag
     5161 ctagcccagg aatgacgagg acttgtgttt cttttaagac atattctgta aatgaaacgg
     5221 aatccatatt tgttttagaa atattaataa aggcgtaaat cgaaccttta agtggatgta
     5281 aagaaagata tgggatttct tccacccgtt ttgcgatgta ttctaggcgt ttttggaaag
     5341 tttctgttac taaaggaatt agtgtctcag aatgatttaa tgcgtaaata gcagctcttt
     5401 gggacggtgt aggagctgaa taagtaattc cttcattaat aatctttgca gcttcgttta
     5461 aataagtagg agcaatcata tatcctaagc gccaaccggt cattgcgaag tttttagaca
     5521 tactaccaaa tgtaatcgtg tgatctggcg cgaatttggc cattggtacg aagtcttcat
     5581 aaaaactaaa accatcatat acttcatccg acaaaataaa aaagtcatat tttttcgcta
     5641 gattagcaat tttttcaaag gtttccggtg aaaaaacagc accggtggga ttattaggtg
     5701 aatttaaaat taaagctttc gttttatcag taatggcagc ttctaaaata tcgacattaa
     5761 tcgcaaaatc gtctttctca taggttggaa taatgatagg agtaccaccg gaatttaaca
     5821 cttgatcttt atacggggag aagtagggtt cgtgaataat gacttcatcg ccgtcgtcga
     5881 gaatggtttg caaggttagg tacataccat gaagcgcgcc aactgtagcg cggatttggc
     5941 tgcgttcaaa agacaaatca taattacggc taaaataacc acgaatagca tcgatgagtt
     6001 ctacatctcc accagattct gtgtattttg tatggcctgc ccgtacgtct tcaaaagcgg
     6061 cattaataat cgattcatcc gtaattaaat caggatcacc aatggataaa tcgagaatat
     6121 caggcattgt tttggcaagt gtgccaatat cagcaagaat gttcacaggc atttgttgat
     6181 gttttttagc aatttttgag ttattcatca tgtataatta gctccttttt tctataagtg
     6241 cagataaacg cctcacctaa aataggcgag acgtaatctt tggttatgct aaaacttttc
     6301 ctaaaaagtc ttttgtacga tcgttttgcg ggttcccgaa tacttcttcg ggcgtgcctt
     6361 gttcttgaat cacgccagca tccatgaaga caacgcggtc ggcaacttct cttgcgaatc
     6421 ccatttcgtg cgttacgaca accatcgtca taccttcttt agcaagcgac ttcataacgc
     6481 ttaatacttc accgaccatt tcggggtcaa gtgcggaagt tggttcatcg aatagcatta
     6541 cgtcaggatt cattgcgagt gctcgggcaa tggctacccg ttgttgttgt ccaccagaaa
     6601 gttgggaagg gtagctagtt gctttatcag ctagaccgac tttttccagt agagaaagcg
     6661 cgtgtttttt cgcagctgca ctatcttcat tctttacttt cataggcgct aacattaggt
     6721 tttcaagaac atttttatgt gggaataagt tgaagttttg gaaaaccatg cccatttttt
     6781 gacgaagttc gttgacattg gtttgttttg ccattaggtc tttgttttcg aaaagaatcg
     6841 tgccggttgt tggttgttct aataagttca ggcaacgtaa gaaagtactt tttccgcttc
     6901 cggaagggcc gataactacg accacttctc cagatgcgat ttcaagatca atacctttta
     6961 agacttctaa tttgccaaaa tgtttgtgta aatttttaat atcaatcact tgttctcatt
     7021 ctcctttcag caacacctag tagtcttgat aagctaaatg ttagtacaaa gtaaattaac
     7081 gatgtaatga ttagcggaat aaatggcttg aagcttgcgc cttggactac gccggtcata
     7141 aacattagtt ctgttacacc aataacggat acgatggaag attctttaat aacagtgacg
     7201 aattcattcc caagagcagg aagaatattt ttcacggctt gcggtaagat gatgtaacgc
     7261 atgctagcgc cttgtgtcat accaagggaa cgagctgctt ccatttgacc tttgttgaca
     7321 gcagaaatac ctgcgcggat aatttcagca acataagcgg cactgtttag cgatagggcg
     7381 atacaaccag aaacaaaggc ggatacgtcc ataccgataa tttgagttcc gaaaaagacg
     7441 atgaaaattt gaattagaag tggcgtacca cggacaaatt caatataaca tgctgctggc
     7501 cagcgtaacc atcttgtttt cgccagtttc atgagcgcta gtaatgagcc gagaatggca
     7561 ccacataata caccgatagc ggcaagggca atagtgatta atgtaccagt gataaagtaa
     7621 ttaccatatt tctcgtaaaa gctaccatct tggaacatta atttattggc ttctttttga
     7681 tattttttca gtaagccggt atcttgtata tctttaatag aagcgttgac tttttcttgt
     7741 aaagctgtag aaccttttgg cattgcgatg gcggtttctt tgctaccatt agcaaatttg
     7801 atatccgcca tagcgagtgt cttatcttga ctaatataag cttcagcaac tggaccttct
     7861 aaaacaaccg catcgacttt gttgctttta aggttaagaa taaggtccgg tactttttga
     7921 agggaaacta cttctgaacc aactagctca ttttgagcta attcttcttg tgtcgtttgt
     7981 ttttgggcac caactttcac gccactaaaa tcattcacac ttgtaaattt atctttatct
     8041 gtctttctaa tcacaacacg ttgctgaacg aacatgtatg gatcagagaa atccacttct
     8101 ttttgacgtt cgggtgtagg tgacatcccg gaaataatca tatcaatctt gccagttttt
     8161 agtgagccaa gcaagctgtc gaaattcatt tctttaattt ctaatttaac atctaaatct
     8221 ttggcaattt tttccgcaat acttacatca aaaccaacga ctttatcttt accgtcgatt
     8281 gtttgatgaa attcatacgg tggatagtca gcggaaaggc cgaccgttaa aacacctttt
     8341 tcttgaattt tagctaaagt ttgatcttct gtatcagcgg cgaacacagt tgtgaagcca
     8401 gaaaatacaa ctataaaaac aa
//
LOCUS       DABQVC010000124         8401 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.124,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000124 DABQVC010000000
VERSION     DABQVC010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8401
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.124"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            58..2634
                     /locus_tag="IBJ56_001992"
     CDS             58..2634
                     /locus_tag="IBJ56_001992"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010631103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HAM3418242.1"
                     /translation="MITSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKT
                     LETYKSIAGEGQLSEAELVEKYAKARAVHGENLDKMIQSVLGYFVLPEYLYQTWLKDI
                     AIGEFEVQKVIDSLNNFERTIAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIK
                     ALIELFQDLNMVALQKSDVLGDAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAAK
                     TSNITSIYDPTVGSGSLLLTVKKHLKEDVQKDLNYYGQEKNTATYNLTRMNLLLHGVR
                     PEKMSVKNGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDPRFEIA
                     GVLPPDSKGDFAFLLHGLYHLGQTGTMAIVLPHGVLFRGGTEGEIRKRLLNKNYIDTI
                     IGLPGNLFTNTGIPVCVLILKKNRAISEPVLVIDASRNFIKVGKQNELQEKDIARIVD
                     TYVERAEKAGYSHLASREEIVENDYNMNIPRYVESIDKEIPHDVDAHLYGGIPQANID
                     ELKTLQTTVKNVLDSALKPIRDGYVQLEKTIDELTNEVLTDKNITTKSDIIREKSEAF
                     IELYWKKLHEINNIVDVNPLMEEMLVNIKELLSSFDGIDVYDGYQVIAEVWKNSLTHD
                     AELIAGGGFYTIGRTREPNMVTKGSGNKKREEQDGWVGAIVPNELIAKRFYSEELQII
                     EDKKARLTAVEAELSELVEVAKIEDSEENIVLFESIKKNAEGEPQDSFESKTVKAELK
                     RVTKESSSYELLKKADGLIAEKSSLGKEIKAKENELKEAVYERILVLTDEEIDELVFE
                     KWFGTMVDDLVKLIELPLKKELDIIKQLHERYAETLDDIDEESKKLENELEKLMSELV
                     VR"
     gene            2635..3849
                     /locus_tag="IBJ56_001993"
     CDS             2635..3849
                     /locus_tag="IBJ56_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HAM3418243.1"
                     /translation="MSHINKRVPKRRFMEFNNAVAWEQRKLGEIANSFEYGLNASSKT
                     YDGENKYIRITDIDESSHVFNQDNLTSPDISLDNLNHYLLEEGDILLARTGASTGKSY
                     CYNKIDGKVFFAGFLIRAKIKHEYNVSFIFQSTLTERYNNFIQVTSQRSGQPGINAQE
                     YARFALYIPKLKEQQKIGDFFKQLDNTIALHQRKLEKIKALKTAYLSEMFPAEGETKP
                     KRRFGGFTDDWEQRKFIEIINRLSKTSNSSILPKVEYEDIIAEEGRLNKDISNKFDSR
                     KGILFQPKNILYGKLRPYLKNWLYPDFKGVAVGDFWVFEAIEATPRFIYNLIQSDSYQ
                     KVANDTAGTKMPRSDWTKVSNSSFFIPKESSEQKRIGTFFKQLDDTIALHQRKLQKLQ
                     NIKKAYLNEMFI"
     gene            3865..6972
                     /locus_tag="IBJ56_001994"
     CDS             3865..6972
                     /locus_tag="IBJ56_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HAM3418244.1"
                     /translation="MGNTIKKASEKAFQDNFVKELQNYQWDAPDFLDGNKQKVTVNDL
                     INHWREELNRLNADQLEGVPLTDGEFSQVMTKVRKINNSYEAAKLLAIEDGKGKIDGI
                     YRDDNPKVTRKQITLTIFKKAEVRGGESSYKIAREVEAPMTDEKGKASRFDIVLLING
                     LPLINVEQKRADKPLDEAFEQFKRYYRNGEYTNNFMAFSQMMVMTTEIETRYFATPKS
                     IKDFNQSFVFHWSDKNNKPMNNWKQIVANFLMIPMAHQMVGDYLIIDEAKEEENKRHM
                     LMRPYQVYALQAVEGAAFGWDQEDKIPHGGFVWHTTGSGKTITSFKTALFLSTRAGFD
                     KVVFLVDRRELDSRTSANFKAYAAFESVSVDDTKHTYHLKKELKSSKAGIIVTTTFKL
                     NSLIKELEETHDSSLADKKIVFIIDEAHRTTMGQMMGDIKKHFKKKGLFYGFTGTPLF
                     DENEVRGKVNHKSEVINTTEKLFGRELHKYTIDEAIADGNVLGFNVDYINTGEFENYD
                     ALRDKLIERLLLEKPELGVKETTKLVYRYSELEVEKIAANKGLLAYNDDTHMPRVVEE
                     ILANWDMQSQEKTFNAILTVAYKKRVIDYYNEFKKQLQSSGQKLNIAMTFSFGNENDP
                     ENVAPEIIKGMFSDYAAFTGIEFVAGDKKHGETAYFEDIVERATRGGSGRNEKNIDLI
                     IVADQLLTGYDSKYLNTLYVDRYLKLQGLIQAYSRTNRVLDKRKEFGSIVNFQYPRMT
                     EDDVNNALKLYGSGGKSSLAIVDLYDTAVKKLRIKIDEMVLTLPDPTAWASLENDDLE
                     RIEFIKAFKDTAVQWRTVEQYYEYTWNEETFGMDEHTWLLYVGAYNNLLNEEQIVYEE
                     SISTPLPGKTKLSRNQRIDAAHILSLIDSKVDSSGAMQFADKETLRLIYEDIQELSNR
                     GEHIQAMLLKDFVEQELVPGKITSNITFDDAFEAWKKEQEQVVIQAFAKEWGIVDQDD
                     ILAKSVSAYSEMQPDVIPYFEDVIGSVEYEIAENKAAGNQLEHKMKLREKMPEWIAET
                     RQRYN"
     gene            7027..7986
                     /locus_tag="IBJ56_001995"
     CDS             7027..7986
                     /locus_tag="IBJ56_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009924159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HAM3418245.1"
                     /translation="MNKDWTKLKQSANGLPTFDSIIPYILEVLKNDEEATIHTIRNRV
                     YKHLNIPEDIKLVTYPETNDFILANRFSFALSELYKAGALCRPKRGIYQITTSGKKLL
                     KINGDKLTKKMLEEEPDYINYIKELAIRNQRKGISTSVSEDIEKENPKKEVGSIIDNM
                     NNEVSIELLDKIRNSDPYFFEQLVVDLLSRMGYSGEGGSAKVTSRSNDGGIDGIINQD
                     PLGTSTVYLQAKRYKEDNRINRSDIQSFYGALASVRADRGVFITTSSYTSGAKEFAVN
                     QGIVLIDGIQLTELMLKYKVGVEAENQYTILRIDNDYFELNNI"
     gene            8034..>8401
                     /locus_tag="IBJ56_001996"
     CDS             8034..>8401
                     /locus_tag="IBJ56_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HAM3418246.1"
                     /translation="MKTKQLKAMEIIEFWRLIEFLNQKAFPIQNMEDRKVQLSKMEEL
                     NQNKLTIFEEVTDQQTIKEKIKDNEKLNEQLPITSSDFHIVVGRMQRKIIIDTLYQEF
                     KDRETVENNTENIAMLAMKV"
BASE COUNT         3142 a         1149 c         1735 g         2375 t
ORIGIN      
        1 taaaaatcag aaaaatattt tatataaact agatattaag gtagtggggg ataaataatg
       61 attacatcag aagaaattaa acgtagactg tgggacggtg caaatgaact ccgtggttcc
      121 atggatgcga gtcgttataa agattacatg ctaggactaa tgttttacaa atttctaagt
      181 gataagacat tagaaacata taaatcaata gctggcgaag gacagttatc tgaagcagag
      241 ctagtagaaa aatatgccaa agcaagagcg gttcatggcg agaatttaga taaaatgatt
      301 caaagtgttt taggctattt tgtgttacca gaatatctat atcaaacatg gttaaaagat
      361 attgctatcg gtgaatttga ggtccaaaaa gtaattgata gcttgaataa ttttgagcga
      421 acaattgctg tatcaggcga ttctgatgat ttccaaggtt tattttccag ttctaccatt
      481 gacttaacag atactgcatt aggtagcaac ttaaatgaac gtagtaaaaa tatcaaagcg
      541 ttaattgagt tgttccaaga tttaaacatg gttgctttgc aaaaaagtga tgttctcggg
      601 gatgcttatg agtatttaat tggtcaattt gctatggaat ctgggaaaaa agctggggaa
      661 ttctatacgc ctagacaggt aagtgaagtt atggcacaaa ttgcggctaa aacttctaat
      721 attacttcca tttatgatcc aacagttggc tctggctcat tattactaac ggtgaaaaaa
      781 catttaaaag aagatgtcca aaaagattta aactattatg gacaagaaaa aaacactgct
      841 acttataact taacgcgaat gaatctgtta cttcatggtg tacgccctga gaaaatgagc
      901 gttaagaatg gtgacacgtt atcagaagac tggcctgaag atccaagtcg tccggctgag
      961 ggagtgctat ttgatgcagt tgtaatgaat ccgccctatt cactagcaaa ctggaataaa
     1021 tctaatttaa aagtaagtga ccctcgtttt gaaatagcag gtgtattacc accagattca
     1081 aagggagact ttgcttttct tttgcatggt ttatatcatt taggtcaaac tggaacgatg
     1141 gcaattgtgt tgcctcatgg tgtgttattc cgcggcggaa ctgagggcga aattcgcaaa
     1201 cgactattga acaaaaatta tattgataca attattgggc tacccgggaa tttatttaca
     1261 aatacaggaa ttccagtatg tgttttgatt ttgaaaaaga atcgagcaat tagtgagcca
     1321 gttcttgtta ttgatgcttc gcggaatttt attaaagtag gcaaacaaaa tgaactacaa
     1381 gaaaaagata ttgcgagaat tgtagatact tatgtggaac gagctgaaaa ggctgggtat
     1441 agtcatttag ctagtagaga agaaattgtg gaaaacgatt ataatatgaa tattcccaga
     1501 tatgtggagt caattgataa agaaattcct catgatgtag atgctcatct ttatggcggc
     1561 attccgcaag caaacatcga cgaactaaaa acattacaga caacggtaaa aaatgtgttg
     1621 gatagtgcgc ttaagccgat tcgtgacgga tatgttcaat tggaaaaaac tattgatgaa
     1681 ctaacgaatg aagtactaac tgataaaaat attactacta aatcagatat tatccgagaa
     1741 aaatctgaag cttttattga actatattgg aagaaattac atgaaattaa taatattgta
     1801 gatgtaaatc cattgatgga agaaatgctc gttaatatta aagaattact ttcctctttc
     1861 gacggaatag atgtgtatga tggctatcaa gttattgcgg aagtctggaa aaatagttta
     1921 acacatgatg ctgagctaat agcaggtggt ggtttctata caattggtcg gacacgtgaa
     1981 ccaaatatgg tgactaaagg tagcggaaat aagaagcgcg aagaacaaga tggatgggtt
     2041 ggcgcgattg ttcctaatga attaattgca aaacgtttct atagtgaaga acttcaaata
     2101 attgaggata aaaaagctcg tctgactgcc gtggaagcgg aacttagtga actagtagaa
     2161 gtggctaaaa ttgaagatag tgaagagaat atcgtactat ttgaatcaat aaagaaaaat
     2221 gcagaaggtg aaccacaaga ttcatttgaa agtaagacag tgaaagcaga actaaagaga
     2281 gtaacaaaag aaagctcttc ttatgagttg ttgaaaaaag cagatggatt aatagctgaa
     2341 aagtcttcgc taggtaaaga aattaaagct aaagagaatg aactcaaaga agctgtttat
     2401 gagcggattc ttgttttaac tgatgaagaa attgatgagt tagtattcga gaaatggttt
     2461 ggcacaatgg tggatgattt agtgaagctt attgaattac cgcttaagaa ggaactagat
     2521 attataaaac agttgcatga acgctatgcc gaaacacttg atgatataga tgaagagagt
     2581 aaaaagttag aaaatgaatt agaaaaattg atgagtgaac tggtggtgag ataggtgtca
     2641 catattaaca agagagttcc taaaagaaga tttatggaat tcaataatgc tgtcgcttgg
     2701 gaacagcgta agttaggtga aattgcgaat tccttcgaat atgggcttaa tgcaagttct
     2761 aaaacatatg atggagaaaa taaatatatt cgaattacag atattgatga aagttctcat
     2821 gtatttaatc aagataatct aacctcccca gatataagtt tagataacct aaatcattac
     2881 ttattagaag agggtgatat tctcttagcg agaacaggag caagtactgg aaaatcttat
     2941 tgttacaata aaatagatgg caaagtattt tttgctgggt ttctaataag agcaaaaatc
     3001 aaacatgaat ataatgtcag ttttatcttt caaagcactt taacagaaag gtataataat
     3061 tttattcagg ttacttctca gagatcaggc caaccaggaa ttaatgctca agagtatgct
     3121 agatttgctt tatatattcc taaattaaaa gaacaacaaa aaataggtga ctttttcaaa
     3181 caactagaca acactatcgc tcttcatcaa cgtaagctag aaaaaataaa agcattaaaa
     3241 actgcctatc tctcagaaat gtttccagca gaaggagaaa ccaaaccaaa acgccgattt
     3301 ggaggattta ctgatgattg ggaacagcgt aagtttatag aaattattaa tcgtttaagt
     3361 aaaacctcta attcgagtat ccttcctaaa gtagaatatg aagatataat tgcagaagaa
     3421 ggtcgattga ataaagatat ctctaacaaa tttgatagta gaaaaggcat tttgtttcaa
     3481 cctaagaata ttctatatgg aaagttacgt ccatatctaa aaaattggtt atatcctgat
     3541 tttaaaggtg ttgctgtagg ggacttttgg gtatttgaag ctatagaagc tacccctcgt
     3601 tttatctata atttaattca atcagatagt tatcagaaag tagctaatga tactgcggga
     3661 acgaagatgc ctagatcaga ttggacaaaa gtatctaata gcagcttttt cattccaaaa
     3721 gaaagctctg aacaaaaaag aataggtacc tttttcaaac aactcgacga cactatcgct
     3781 cttcaccaac gcaaactaca aaaactacaa aacatcaaaa aagcatactt aaacgaaatg
     3841 ttcatttaga acgggggatg aatcatgggg aacacaataa aaaaagcgtc cgaaaaagct
     3901 tttcaagata attttgtgaa agaactccaa aattatcaat gggatgcacc agatttttta
     3961 gatggaaaca aacaaaaagt aaccgtgaat gatttaatta accactggag agaagaactt
     4021 aaccgactta acgcagatca gctagaagga gttcctctaa cagatggtga atttagccaa
     4081 gtaatgacaa aagtaaggaa gataaataat agttacgagg cggcaaaact cttagcgatt
     4141 gaagatggta aaggaaaaat tgatggaatt tatcgagatg ataatccgaa agttacaagg
     4201 aaacaaataa ccctgaccat cttcaaaaaa gcagaggttc gtggtggaga atctagttat
     4261 aaaattgcgc gtgaagtaga agcgccgatg acagatgaaa aagggaaggc aagtagattt
     4321 gatattgtct tactcattaa tggcttacct ttaattaatg tagaacaaaa acgtgccgat
     4381 aagcctttag atgaagcgtt tgaacaattt aaacgttatt atcgtaatgg tgaatataca
     4441 aataatttta tggcgttttc tcagatgatg gtaatgacaa cggagattga aacgcgctat
     4501 tttgctactc caaaatcaat aaaagatttt aatcagagtt ttgtttttca ttggtcagat
     4561 aaaaataata aaccgatgaa taactggaag caaattgttg ctaattttct tatgattcct
     4621 atggcgcacc aaatggttgg ggattatttg attattgatg aagcaaaaga agaagaaaat
     4681 aaacgacaca tgcttatgcg gccgtaccaa gtgtatgcgc ttcaagcagt tgagggcgcg
     4741 gcatttggct gggatcaaga agataaaatc ccacatggcg ggtttgtttg gcatacaacg
     4801 ggttctggaa aaacaattac tagttttaaa acagcgctat ttctgtccac tcgcgctggt
     4861 tttgataaag ttgtcttttt agttgataga cgcgagctag atagtaggac aagcgcaaat
     4921 tttaaagctt atgcagcttt tgagtctgtt tcagtagatg atacgaaaca cacctatcat
     4981 ttaaaaaaag aacttaagtc ctctaaagct ggtattatcg tgactacaac gtttaagtta
     5041 aatagcttaa taaaggaatt agaagagaca catgattcta gtttagcgga taagaaaatc
     5101 gtatttatta tcgatgaagc tcaccggaca acaatggggc agatgatggg tgatataaaa
     5161 aaacacttta agaaaaaagg cttgttttat ggctttacag ggacaccact ttttgatgaa
     5221 aatgaagtta gaggaaaagt taatcataaa agtgaagtaa ttaacacgac ggaaaaatta
     5281 tttggaagag aattacataa atatacgatt gatgaagcga ttgctgatgg gaatgtatta
     5341 ggattcaacg tcgattatat taatacgggt gagtttgaaa attacgatgc gttacgagat
     5401 aaacttattg aacgattact cttagaaaaa ccagaattag gtgtcaaaga aactactaaa
     5461 ttagtatata gatactcgga attagaagta gaaaaaatag cagcaaataa aggtctgcta
     5521 gcttataacg atgatacgca tatgccgaga gttgttgaag aaatacttgc taattgggat
     5581 atgcaatctc aagagaagac atttaatgca atactcacag ttgcatataa aaaacgagtg
     5641 attgactatt ataatgaatt caaaaagcaa ctacaatcaa gcgggcaaaa attaaatata
     5701 gcgatgactt tcagttttgg taatgaaaat gatcctgaga atgttgctcc agaaattatc
     5761 aagggaatgt ttagcgatta tgctgctttt acaggtattg agtttgtagc aggtgataaa
     5821 aaacatgggg aaacggctta ttttgaagat attgtagaac gagcaactcg cggcggtagt
     5881 ggtcgaaacg agaaaaatat tgatttaatc atagtcgcag atcagttgtt aactggttat
     5941 gactctaaat atcttaatac attgtatgtg gatcgatatt taaaacttca aggtttaatc
     6001 caagcttatt cacgtactaa tagagttctt gataaaagaa aagagtttgg aagtattgtc
     6061 aatttccaat accctagaat gacagaggac gatgtaaata atgctttgaa attatacgga
     6121 agtggcggga aaagtagttt agccattgtg gatttatatg atacggctgt taaaaagttg
     6181 aggataaaaa tcgatgaaat ggttctcaca ttaccagacc caactgcgtg ggcaagcctt
     6241 gagaatgatg atttggagcg aatcgagttt atcaaagcgt ttaaggatac cgcagttcag
     6301 tggagaaccg tagagcaata ttatgagtat acttggaatg aagagacgtt tggtatggat
     6361 gaacatacat ggttacttta tgttggtgct tataataact tactgaatga agagcaaatc
     6421 gtatatgaag aatctattag tactccgctt cctggaaaaa cgaaattatc tcgtaaccaa
     6481 agaattgacg cagcgcatat tttaagttta atcgattcga aagttgattc aagtggagca
     6541 atgcagtttg ctgataaaga aacattacgc cttatttatg aagatattca ggagcttagt
     6601 aatagagggg aacacattca ggcaatgcta ttaaaagatt ttgtcgaaca agagctagtg
     6661 ccaggtaaaa taactagtaa tatcactttt gatgatgctt tcgaagcttg gaaaaaagaa
     6721 caagagcagg tggttatcca agcttttgct aaagaatggg gtattgtaga tcaagatgat
     6781 atattagcta aatctgttag tgcttattct gaaatgcaac cagatgttat cccttatttt
     6841 gaggatgtaa taggtagcgt tgaatatgaa attgcagaaa ataaggctgc gggaaaccaa
     6901 ttagagcata agatgaagct acgggaaaaa atgcctgaat ggattgcgga gactaggcag
     6961 aggtataatt gatttgaaat gtggttacaa taactaacaa caaaaataga gaaagcggga
     7021 cctcatatga ataaagactg gacaaaatta aaacaatcag caaacgggct acctacattt
     7081 gactccatca ttccatatat tttagaagtg ctaaaaaatg atgaagaggc aacaattcat
     7141 actattagaa atagagtata taaacattta aatattccag aagatattaa attggtcact
     7201 tatccagaaa caaatgattt tatccttgct aatcgcttta gttttgcgtt aagcgaacta
     7261 tataaagcag gggcattatg tcgtcccaaa agagggatat accaaataac cacatctggc
     7321 aaaaaattat taaaaataaa cggagataaa ctcacaaaaa aaatgttaga agaagagcca
     7381 gattatatta attacatcaa agaattagct atccgaaacc agcgcaaagg aatttcgaca
     7441 agtgttagtg aagatattga aaaagaaaat cctaaaaaag aagttggcag cattattgat
     7501 aatatgaata atgaagtttc tattgaatta ttagataaaa ttcgaaatag tgatccatat
     7561 tttttcgagc aacttgttgt tgatttactt agcagaatgg gatatagcgg agaaggtgga
     7621 agtgccaaag taactagtcg atccaatgac ggggggattg atggtattat taatcaggac
     7681 ccacttggca cgagtacagt atatctccaa gctaaaagat acaaagaaga taatagaata
     7741 aatcgatcgg atatacaatc attttatggt gcattagcaa gtgtgcgagc tgatagagga
     7801 gtttttatta cgacctctag ttatacaagt ggagcaaaag aatttgctgt taatcagggt
     7861 attgtgttaa ttgacgggat tcaattaaca gaattgatgt tgaagtacaa agttggagtg
     7921 gaagctgaaa atcagtatac gatactccgg attgataatg attattttga gttgaataat
     7981 atataaaaag aaattttcgt gagatgaaga catagcataa ggcgggggca gttatgaaaa
     8041 caaaacaact aaaagccatg gaaattattg aattttggcg attaatagaa tttttgaacc
     8101 aaaaagcgtt tccaatacaa aacatggaag atagaaaagt acagttatca aaaatggaag
     8161 agctaaatca aaacaaacta actatttttg aggaagtaac agatcaacaa accattaaag
     8221 agaagattaa agataatgaa aaacttaatg aacaattacc aattactagt agtgattttc
     8281 atattgtagt tggtcggatg caaaggaaaa ttattattga tacactttat caggaattca
     8341 aagatagaga gacagttgaa aataatacag aaaacatcgc tatgcttgcc atgaaagtca
     8401 a
//
LOCUS       DABQVC010000125         8277 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.125,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000125 DABQVC010000000
VERSION     DABQVC010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8277
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.125"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..663
                     /locus_tag="IBJ56_001997"
     CDS             <1..663
                     /locus_tag="IBJ56_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HAM3418247.1"
                     /translation="AAVNKYKKLNSRKIIVKLKAMFGQTPEAEEKLRLMLSERMKKFL
                     AEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAKGDTVG
                     LSEQVNSFLMFSINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIASS
                     MDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAPLGENEEDLKGGDINENKG
                     DS"
     gene            641..1387
                     /locus_tag="IBJ56_001998"
     CDS             641..1387
                     /locus_tag="IBJ56_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HAM3418248.1"
                     /translation="MKIKEIPKIESRLEFKNSSENPEIADLYLYGSIGSGWFDDITSS
                     EVQNFLKTSSVSQINVHVNSGGGDVFESIAIHNLLKAHPAKISIYIDALAGSGASVIA
                     MAGDEIIMPSNAMMMIHKAWTIAAGNADEFRKVANDMDKIDHAVTESYTERFVGEREE
                     LVTLLTNEEWLTAEECVTLGFCDSIGEIELNEEEQVTENSNEAVTVASIVDKYKVVAS
                     TENKAIQTKNNIFKSIANRSDAFLLGGNDK"
     gene            1384..2556
                     /locus_tag="IBJ56_001999"
     CDS             1384..2556
                     /locus_tag="IBJ56_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HAM3418249.1"
                     /translation="MNNLDKKDSETLNISTAFLNAIKEGATEAEQVTAFTNMAEQIQN
                     NIIAQARKEVNREMNDNNVLASRGANALTSDESKYYNEVIAGNGFAGVTALLPPTVFE
                     RVFEDLTVEHPLLSKINFVNTTATTEWIISVGDVATAWWGPLCAEIKEVLDNGFDKIQ
                     TGMYKLSAYIPVCNAMLDLGPSWLDQYVRTILGEAMALGLEAGIVNGSGKDQPIGMMR
                     DLNNVTAGEHPVKTATPLTDLTPATLATKVMLPLTDNGKKSVSDAILVINPADYWSKI
                     YAATSYMTPQGVWVTGILPVPLEIVQSVAVPVGKAVAGRAKDYFMGIGSEQVIRTSTE
                     YRLLDDETLYYAKQYANGRPKDNSSFLVFDITGLEGSPAIDVNVVNNATPSETPAE"
     gene            2579..2698
                     /locus_tag="IBJ56_002000"
     CDS             2579..2698
                     /locus_tag="IBJ56_002000"
                     /inference="COORDINATES: protein motif:HMM:NF020688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418250.1"
                     /translation="MKVVELKEELDKRGITYNTSDLKSDLILKLEEDDLNAGV"
     gene            2685..2978
                     /locus_tag="IBJ56_002001"
     CDS             2685..2978
                     /locus_tag="IBJ56_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418251.1"
                     /translation="MQVSDELLQEVKDYLHITWSDETEDKRIRKIIERVSARISQLTG
                     VSFTFEKEDAAKQLLFDGVRYVNNNSYEYFQQNFICEIQSLQFDVAVNINAEG"
     gene            2965..3303
                     /locus_tag="IBJ56_002002"
     CDS             2965..3303
                     /locus_tag="IBJ56_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HAM3418252.1"
                     /translation="MQKVNHDTFNDGVLFYGISETLRDSNRKRIGTNFVSKGKLFYEE
                     VSMRDQDVMRINAMGKDLNLKIKTHYRKEATSYQKIQIEGVQYEVSYIDKDRNVRLFW
                     YLTRSGDENE"
     gene            3296..3706
                     /locus_tag="IBJ56_002003"
     CDS             3296..3706
                     /locus_tag="IBJ56_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418253.1"
                     /translation="MNEATKERITKLNEYLITKLSENTGLNVYQDNVSETELNEEMNG
                     VYDYIIFSTGGFSKSDTSQFTLIQEVTVQVATENTSDLDGLQIDIITSLEGTGGAGPY
                     YFLNSTKGQVQKGQQDGYVDALELIFTRSFKYVC"
     gene            3696..4118
                     /locus_tag="IBJ56_002004"
     CDS             3696..4118
                     /locus_tag="IBJ56_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418254.1"
                     /translation="MCAKWSLEFSDVERLSNLISQIPNKSEAIINKTLETKAVPLVKL
                     NIEKRINLSKNWKGQLLNKNHAQSSGPFNVKMGNLGFELLTKPKFNYLIFPDQGIGKH
                     NKTKQDFMQLGVEESSQEIVEMLEQAVFKEINDTLGGK"
     gene            4120..4698
                     /locus_tag="IBJ56_002005"
     CDS             4120..4698
                     /locus_tag="IBJ56_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAM3418255.1"
                     /translation="MATIVEDFDATRVTNVGTKFTGDTASIAFGCLGSIEGETELLEL
                     VKKCEGVETKKKTTPQKMTLTLTGHVKVDVLRDIFGLSNEGLKVGVYSYGADSLSKPF
                     ILTADVLDEFEAQTKLIAFSNCVAATGLKVTVENGADEVAEIELEFTAMIDDNRKCYY
                     EAIVSELDATGRDAFVKQWHTNFTPEMVVATP"
     gene            4819..5181
                     /locus_tag="IBJ56_002006"
     CDS             4819..5181
                     /locus_tag="IBJ56_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418256.1"
                     /translation="MEFTIDFLDGTKAQLDSNVTMLTLYRLQNEGEGAVDGKFLKGFM
                     QKEADLDPISIAQAMYAAYRQATDKKKAKNFEEFMENYQMDLEIDMQIYFAIVTKRAR
                     DEFAKQFKKKTGSSKGKK"
     gene            5364..>8277
                     /locus_tag="IBJ56_002007"
     CDS             5364..>8277
                     /locus_tag="IBJ56_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail tape measure protein"
                     /protein_id="HAM3418257.1"
                     /translation="MANNQAKVTFKVFNQDFNRAMAEMNADSKKLRQELKLEQEQLKN
                     TGSETDKLAADLNGLQKQYDVASQKTKETAQQLEKVKTKFGENSTEASRMESALKSAQ
                     ITEQQLANKIELTTDALEKAKSAETGRVASLNKLQSEQSNLEAQSEKLASEYKLESAA
                     MEGTATEAEKLARAEKYLADQTNVAEQKIKNMEQQLELVKQEYGENSTEALKMETSLN
                     EAKMSVSKLGNELTEFKNDSNNAGQGMDELNNKMSGAVMMEAAEHIAAVGEKLKEIGQ
                     YALEAFREVDEGLDTIITKTGATGKAGEDLSNVFDNIAGNSKFEFQQIGDAVGELNTQ
                     FGFTGKELEKNSMKLLKFSDINGSDVTNSTMKAKQALEAYGLENKDLSMVLDSVTYVA
                     QGTGQSVDDIFDKAVKGAPQIEALGLSFADGAQLMGNLDKAGVDSSATLSSLTKASVV
                     YAKENKTLAQGLSELEGKILGAKTETEKINLAAEVFGSKGAPRMVKAIEDGRLSLDGL
                     AGTAEMASGTVSKTFEATLDPIDRQDVALNNVKMAMADLGNSIAEVLAPILDALSSVL
                     QKVSEWFNGLPAPVRQVTVVIGLLLIGFTALLPVITAIVAMIGILGTAMLGVVGIIAA
                     IVAGIAILVVGFKWLWDNCEGFRNFWIGLWEWIVAAFKAAWEYIQPGLQSIGDALKKF
                     WEEYGPTIIGALQAVWDFIVGFVAWLEPLWTFLWEGLKSTLKFAWDAILAIVQFALDY
                     LGGLIDFWAGIFTGDWDRVWKGIQEMTSAALEAIKGIFFALVRWIDNILKSLGIDMGA
                     IWKSITDATKTAWKWISDYIVNPIRDANNRAKLILAAFKAAFKIAFDVIRDNIANTWS
                     KVEDKIIKPVKNAYDKVKNIVDDIKDTFKNLKIKFPKIEMPPMPHFSLKGKFSLKEMT
                     VPKLDVSWHKNGGFFNSASVIGIGEAGPEAAVPLVGKRMDPFADAVSNRMLSSLPSM"
BASE COUNT         2948 a         1161 c         1824 g         2344 t
ORIGIN      
        1 gctgcggtta ataaatataa aaaattaaac tctagaaaaa taatagtaaa actaaaagcg
       61 atgtttggac aaactccaga ggcagaagaa aaattgagac ttatgctatc tgagagaatg
      121 aagaagtttt tagcagaagg tgactctgct ttacctgtcg aagatggaat ggaaatagac
      181 gaacttgcgg gagattctaa aatagcagaa tcaagagata taaaaaaaat gattgatgat
      241 gtttttgaaa tggttgcaaa tagttttaac attccacttg gtttagcaaa aggagacaca
      301 gtgggcttaa gtgaacaggt taattcattc ttaatgttta gtataaatcc tatcgctgag
      361 atgtttaccg atgaaggaaa cagaaagttt tatggtaggg attcggtttt agaaagaacc
      421 tatatgaaat tagatactac aagaattaag gttcaagata ttcaagaaat tgcgagttca
      481 atggatgtgc tgttccatat cggtgtaaat acaatagatg ataatttaag aatgattgga
      541 cgtgaacctg tgatgagtcc agaaactcaa gagcgttttg ttacaaaaaa ttatgcacct
      601 ttaggtgaga atgaagaaga tttgaaaggg ggtgacataa atgaaaataa aggagattcc
      661 taaaatagaa agtcgattag agtttaaaaa cagctctgaa aacccagaaa tcgcggactt
      721 gtatttatac ggatcaatag gtagtggctg gtttgatgat attacgtcta gtgaagtaca
      781 gaatttttta aaaacatcta gcgtctctca aataaatgta catgtcaata gcggtggtgg
      841 agatgttttt gaatccattg ctattcataa tctattaaaa gcacacccag ctaaaatcag
      901 tatttatatt gatgctcttg ctggaagtgg tgcatctgta attgcaatgg caggtgatga
      961 aattattatg ccaagcaatg caatgatgat gattcataaa gcctggacaa tagcagctgg
     1021 taatgcagat gaatttagaa aagttgcgaa tgacatggac aagattgacc atgcagtgac
     1081 ggaaagttat acagaacgct ttgttgggga gcgtgaagag ttagtaacat tacttactaa
     1141 cgaggaatgg ttaacagctg aagaatgtgt gacacttggt ttttgcgatt ctattggtga
     1201 aattgaatta aatgaagagg aacaagttac tgagaattca aatgaagcag taacagtagc
     1261 aagtatagtt gataaatata aagtagttgc atcaactgaa aacaaagcaa ttcaaacaaa
     1321 aaataatatt tttaaaagta tcgcaaatag aagcgatgct tttttattag gaggaaatga
     1381 caaatgaata accttgataa aaaagattca gaaacattga acatcagcac agcattttta
     1441 aacgcaatta aagaaggcgc gacagaagcg gagcaagtaa cagcgtttac aaacatggct
     1501 gaacaaattc aaaacaatat tatcgctcaa gctcgtaaag aagtaaatag agaaatgaat
     1561 gataataatg tactcgctag ccgtggtgcc aacgctttaa caagtgatga aagcaaatac
     1621 tataatgaag tcattgcagg aaacggtttt gctggagtta ctgcattact tccacctacc
     1681 gtttttgagc gtgtgtttga agatttaacg gtggaacatc ctctattaag taaaattaat
     1741 tttgttaata ctactgcaac aacggaatgg attattagtg ttggtgatgt cgcaactgct
     1801 tggtggggtc ctttatgtgc cgagattaaa gaagttttag acaatggttt tgataaaatt
     1861 caaactggaa tgtataaatt atctgcttat attccggttt gtaatgcaat gctcgattta
     1921 ggaccgtcgt ggttagatca atatgttcgt actattttag gtgaagcaat ggcgcttggt
     1981 cttgaggctg gtattgttaa tggttccggg aaagaccaac caatcggaat gatgcgcgat
     2041 ttgaataatg ttacggctgg ggaacaccca gttaaaaccg caacacccct gaccgatttg
     2101 acaccagcta cactagcaac aaaagtaatg ttacctctga cagacaacgg aaagaaatct
     2161 gtcagtgatg cgattcttgt tataaatcca gctgattact ggagcaaaat ctatgcggca
     2221 actagttaca tgacgcccca aggagtttgg gtgacaggta tcttaccagt tccacttgag
     2281 attgttcaat cggttgcagt gcctgtcggt aaagcagtag ccggtcgtgc taaggattac
     2341 tttatgggaa ttggttcaga gcaagttatt cgcacatcaa ctgaatatcg tttattagac
     2401 gatgaaacac tctactatgc taagcaatat gcgaatggtc gacctaaaga caattcttct
     2461 ttcttagtat tcgatattac aggtctagaa ggttcgcctg ctattgatgt gaatgtagtg
     2521 aataacgcga caccctccga aacccctgct gaataaagcg gggaataact attctactat
     2581 gaaagttgta gagttaaaag aagaactaga taagcgagga atcacatata acacttcgga
     2641 tttaaaatct gacttaatat taaagttaga ggaggatgat ttaaatgcag gtgtctgatg
     2701 aattattaca agaagtaaaa gactacttgc atattacttg gtctgatgaa acagaagaca
     2761 aacgtataag aaaaatcatt gaaagagtat cggcacgcat tagtcaactg actggcgtgt
     2821 cttttacttt tgaaaaagaa gatgctgcga aacaattgct tttcgatggt gtgagatatg
     2881 taaataataa ttcttatgaa tactttcaac aaaactttat ttgtgaaatt caaagcttgc
     2941 aatttgatgt ggcggtgaat attaatgcag aaggttaatc atgacacttt taacgatggt
     3001 gtcttgtttt atggaatatc ggagacactt cgcgactcta acaggaaacg aataggaaca
     3061 aattttgtca gtaagggcaa gttgttttat gaagaggtat ctatgcgtga tcaagatgtt
     3121 atgagaatca atgcaatggg aaaagattta aatttaaaaa ttaaaactca ttatcgaaaa
     3181 gaggcaacat cttatcaaaa aatccaaatt gaaggtgttc aatatgaagt aagttatata
     3241 gataaagaca gaaatgtgcg tttattttgg tatttaacta ggtcaggtga tgaaaatgaa
     3301 tgaggcgaca aaagagagaa ttacaaaatt aaacgagtat ttaatcacga aacttagtga
     3361 aaacacaggt ttaaatgttt atcaagataa cgttagcgaa acagaattaa atgaggaaat
     3421 gaatggtgtt tacgattata tcattttttc cactggtgga ttttcaaaaa gtgacacctc
     3481 acaattcaca ttgatacaag aagtaacagt tcaagtagca acagagaata ctagtgattt
     3541 ggatggattg caaattgaca taattactag tttagaagga accggtggag ctggtcctta
     3601 ttattttttg aactctacta aaggtcaagt tcaaaagggg caacaagatg gctatgtaga
     3661 cgcactggaa ttaatcttta caaggtcatt taaatatgtg tgctaaatgg tctttagagt
     3721 tttcggatgt tgaaagattg tcaaatttga ttagtcaaat tccaaacaaa tctgaagcta
     3781 ttattaataa aacacttgag acaaaagcag ttccacttgt gaagttaaac atagaaaaaa
     3841 gaataaatct ttctaaaaat tggaaaggtc aattgcttaa taaaaatcat gcgcaatcgt
     3901 ctggaccttt taatgtgaaa atgggaaatt tggggtttga attattaaca aaacctaaat
     3961 tcaactattt aatttttcca gatcaaggga ttggaaaaca caataaaaca aaacaagact
     4021 ttatgcaatt aggtgtagaa gaatcatctc aagaaatagt agagatgtta gaacaagcag
     4081 tatttaaaga aataaatgat accttaggag gtaaataaaa tggcaacaat tgttgaagat
     4141 tttgatgcaa caagagtaac aaatgtaggt acgaaattca ctggtgatac tgcaagtatt
     4201 gcatttgggt gtctaggttc tattgaaggt gaaacagagt tactcgaatt agtaaaaaaa
     4261 tgtgaaggtg ttgaaacgaa gaaaaaaaca acgccccaaa aaatgacact gacgttgaca
     4321 ggtcatgtaa aagtagacgt gttacgagat atttttggtt tatcaaatga aggtttgaag
     4381 gtaggagttt actcgtatgg tgctgacagt ttaagtaaac catttatttt aacagcggat
     4441 gtgttagatg aatttgaagc gcaaacaaaa ttaattgcat tctcaaattg tgtggcggca
     4501 acaggattaa aagtaacagt agaaaatggt gcagatgaag tagctgaaat tgaattagaa
     4561 ttcactgcta tgattgatga taatagaaaa tgttattatg aagcaattgt atcagagctt
     4621 gatgctactg gtcgcgatgc atttgtaaag caatggcaca caaatttcac accagaaatg
     4681 gttgttgcca caccctgaaa ctccccttga attgcctttg gaaaatgaat ctggcatagg
     4741 ggacgactca gaagaaacaa ctcaagatta gacggggtaa attatcccgt cttttttatt
     4801 tgcataggag gaattttaat ggaatttaca atagattttt tagatggaac taaagcgcaa
     4861 ttagactcaa atgtcacaat gttaacttta tatcgattgc aaaacgaagg tgaaggtgct
     4921 gtcgatggga aatttttaaa aggttttatg caaaaagaag cagatttaga ccctatttca
     4981 attgcacaag caatgtatgc ggcgtataga caagctacag acaaaaaaaa agcaaagaat
     5041 tttgaagagt ttatggaaaa ttatcaaatg gatttggaaa ttgatatgca aatttatttc
     5101 gcaattgtta cgaagcgagc tagagatgag tttgcaaaac aattcaaaaa gaaaacaggt
     5161 agttcaaaag gaaaaaaata aaactgccgg acatcattat tgaatgtgta gaggatttgt
     5221 acactttata tctctatgtg tttgaactaa atcgtgatga tatctggcaa ctgcccttaa
     5281 catccgttca gatgatagca gagaaaaaga ctgcaattga aaactggaca aattatgaga
     5341 acgaaaaggc aggtgggaaa taaatggcaa acaatcaagc gaaagttaca tttaaagttt
     5401 ttaatcagga cttcaataga gccatggcag aaatgaacgc tgatagtaaa aaattgagac
     5461 aagaattaaa acttgaacaa gaacagttaa aaaacactgg atcagaaact gataaattag
     5521 cagctgattt aaatggtcta caaaagcaat atgatgtagc tagtcaaaaa acaaaagaaa
     5581 cagcgcaaca gctagaaaag gtaaaaacaa aatttggaga aaacagcaca gaagcaagtc
     5641 ggatggagtc agctcttaag agcgcgcaaa taacagaaca acaacttgct aacaaaattg
     5701 agcttactac tgatgcttta gagaaggcaa aatcagcaga aactggtaga gttgcttctt
     5761 tgaataaatt gcaatcagaa caatctaatt tagaagctca atcggaaaaa ttggcaagcg
     5821 agtataaatt agagtcggct gcgatggaag gtactgctac agaagctgaa aagcttgcta
     5881 gagctgaaaa gtatcttgct gatcaaacaa atgtagctga acaaaaaatt aagaatatgg
     5941 aacaacagct agaattagtt aaacaagaat atggtgaaaa tagtacagaa gctttgaaga
     6001 tggaaacatc attaaatgaa gcaaagatgt ctgtgtcgaa actaggcaat gagttgactg
     6061 aattcaagaa tgactctaac aatgccgggc aagggatgga tgaattaaat aataaaatgt
     6121 ctggtgcggt tatgatggaa gcggcagagc atatcgcagc tgtaggagaa aaactcaagg
     6181 aaattggtca atatgcactt gaagcttttc gtgaagtaga tgaaggtctg gacacaatca
     6241 ttacaaaaac aggtgcgacc ggaaaagccg gagaagattt atcaaatgta tttgataaca
     6301 ttgcaggcaa ttctaagttt gagtttcaac aaattggtga tgctgtgggt gagctcaaca
     6361 ctcaatttgg atttacaggt aaggaattag aaaaaaattc tatgaaactg ttgaagttct
     6421 ctgatataaa tggttctgat gttactaaca gtactatgaa ggcgaaacag gcacttgaag
     6481 cttatggatt ggaaaataaa gatttatcca tggttcttga ttcggtgact tatgttgcgc
     6541 aagggacagg tcaaagtgtc gatgacatat ttgataaggc tgtcaagggt gcaccacaga
     6601 ttgaagcatt gggtctatca tttgcggatg gtgcacaatt aatgggtaat ttggacaaag
     6661 ctggtgtcga ttcaagtgcc acattatcta gtttgacaaa ggctagtgtt gtgtacgcaa
     6721 aagaaaataa aactcttgcg caaggtttat ctgaattaga aggtaaaatt ttgggagcta
     6781 aaacagagac tgaaaaaatt aatctagctg cggaagtttt tggttcaaag ggtgcgccac
     6841 gaatggtaaa agctatagag gacggtcgtt taagtttaga cggtcttgca ggaacggcgg
     6901 aaatggcttc aggaacagtg tctaaaacat ttgaagcaac tcttgaccct atagaccgac
     6961 aagatgtcgc tttgaataat gtgaaaatgg caatggctga tttggggaac tctattgcag
     7021 aggtacttgc gccaattcta gacgcgcttt catctgtctt acaaaaggtg tcagagtggt
     7081 tcaatggact acctgcccct gtccgacaag tgacagttgt aattggactg ttgctaatag
     7141 gttttaccgc attgctccca gtcataactg cgatagttgc tatgattggc attttaggaa
     7201 cagcgatgtt aggcgtggta ggcattatag cagcgatagt tgctggaatt gctatattag
     7261 tcgttggatt caaatggttg tgggataatt gcgaaggttt tcggaatttc tggataggat
     7321 tgtgggaatg gattgttgcg gctttcaaag cagcttggga atatattcaa ccaggtttac
     7381 aatctattgg agatgcactt aaaaagttct gggaagaata tggtccgaca attattggag
     7441 cgttgcaagc tgtttgggac tttattgtag gctttgttgc ttggttagaa ccattgtgga
     7501 catttttatg ggaaggttta aaaagtacac ttaaatttgc atgggatgca attttagcta
     7561 ttgttcaatt tgctttagat tatcttggtg gtttgattga cttttgggca gggattttca
     7621 caggtgactg ggatagagtt tggaaaggta ttcaagaaat gactagtgct gctttggaag
     7681 ctatcaaagg tatattcttt gcactggtta ggtggataga taatattcta aagtctttag
     7741 gaatagacat gggtgctatt tggaaaagca tcactgatgc tacaaaaaca gcatggaagt
     7801 ggattagtga ttacattgtt aatcctatta gagatgcaaa caatagagcc aaacttattt
     7861 tagctgcctt taaagccgcc tttaagattg cttttgatgt aatacgagat aatatagcaa
     7921 acacgtggtc aaaagtagag gataaaatta taaaaccagt gaaaaatgca tatgataaag
     7981 ttaaaaacat tgttgacgat attaaagata catttaaaaa tctaaaaata aaatttccta
     8041 aaattgaaat gcctccaatg ccacatttta gtttgaaagg taaatttagt ttaaaagaga
     8101 tgacagttcc taaattggat gtaagctggc ataaaaatgg aggtttcttt aactcagcat
     8161 ctgtcattgg gattggagaa gctggtccgg aagccgctgt gcctcttgtt gggaaaagga
     8221 tggacccttt tgctgacgct gtatcaaata gaatgctttc atcgctacct agtatgg
//
LOCUS       DABQVC010000126         8237 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.126,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000126 DABQVC010000000
VERSION     DABQVC010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8237
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.126"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            6..1271
                     /locus_tag="IBJ56_002008"
     CDS             6..1271
                     /locus_tag="IBJ56_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HAM3418258.1"
                     /translation="MFNKKKTIASLIVLSSLASQIALTPISALADTHDTNNIALLQNT
                     NENVPYKYTSTLTFPTLTNQTQEDYKLEIKLALPTGMNYTGLQVSVGGEDITNQVGTT
                     SFDNSTNTVTFKFDKVTSWDSLSKAKVKFDWKTSYSGEGGEAKIDSLVATATATSEDK
                     AGNKSTSTGSLKPKDISAPVVKADKTEVTYNLGSNVTEEQFLTDINASVTDNYDSTIS
                     LTSNFTSIVNLAVSGDYSVNVQATDKAGNVSNTVNVTVHVATPAPVAGANITVNYLDS
                     DGNKLAESDTLTGTIDSNYQSTSKKISGYTLETTPKNATGTFTDTPQTVDYIYKKDTV
                     TPTPIVDPVNPVDPVDPVNPVDPVDPVVNKPVIVTPNTDQVTTSNSVEKTTYNSLPKT
                     GDTDQSTATTIFGALLLLISAPLLLFKKK"
     gene            complement(1419..2687)
                     /locus_tag="IBJ56_002009"
     CDS             complement(1419..2687)
                     /locus_tag="IBJ56_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HAM3418259.1"
                     /translation="MIMNANLEVNAEVVKESYVYLLSRYLVLRQENFDTKEDKIPYNT
                     LKHNSISPADANFVNPNFDVVYSEAWIAVDDENAVILEVPEIKNRYYTVQLLDGWGEV
                     VTNINERNYPEHPHGKFAFVKKGTNPSVPSDAVKIELPSEKVKVLLRVEQKDDPEGAV
                     KLQKAFKFDAPDNIKIKEPLEIPHFTNAEFLLEEIYSNLEELLATYPDKMPRATEFQD
                     KARQVAAYIELGDEQKAEVRNLIVKEAIPYFTNGAKGFGTQKGGWSVTYVAGAFENDI
                     LARAIINYGGIWANSIQEALYFIGQKGTDNELLTGDKVYKIYFPADELPSELADAFWS
                     VTLYSVPDYHVIPNKLNKFCINNYSGPKLSEDGSLTLYIASEKPADVDPGNWLPSKAG
                     KEFSLNFRLYVPKKEVLEGKVFLPPLEVIK"
     gene            complement(2749..3606)
                     /locus_tag="IBJ56_002010"
     CDS             complement(2749..3606)
                     /locus_tag="IBJ56_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose transporter GlcU"
                     /protein_id="HAM3418260.1"
                     /translation="MNIVIALIPAVMWGIMPLVVSKIGGKPRQQIIGTTFGALAFAIG
                     VFIFTNPEYTATIIIASFISGAFWSLGQMNQFRAFTQVGVSKTMPLSTGMQLVGTSLF
                     GVFAFHEWGTTSKLVLGFSALALIIIGIFLTSYQQHKDENSGQNMKKGIITLLISSVG
                     YVGYVVITRWFDISGWDAILPQAIGMVVAGLLFSIKSEEKRFTKQTWLNMIPGVMWAT
                     GNLALLFSNKLVGIATGFSLSQMGVVISTIGGILFLGEKKTKKELILVIIGVVLVIIG
                     GTMIGIAKS"
     gene            3720..4004
                     /locus_tag="IBJ56_002011"
     CDS             3720..4004
                     /locus_tag="IBJ56_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HAM3418261.1"
                     /translation="MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIV
                     LKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAAELMEEIKRRFGDTL"
     gene            complement(4049..4930)
                     /gene="rsmI"
                     /locus_tag="IBJ56_002012"
     CDS             complement(4049..4930)
                     /gene="rsmI"
                     /locus_tag="IBJ56_002012"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HAM3418262.1"
                     /translation="MIKSQKSFSGASQGALYLVPTPIGNLEDMTFRAIRMLKEADIIA
                     AEDTRNTVKLLNHFEITTRMTSYHQFTKENKEDNIIQRMLDGEVVALVSDAGMPSISD
                     PGYELVQSALNANIPVIPLPGANAALTALIASGLAPQPFYFYGFLPRQNKERTQAIEK
                     LAAREETWILYESPHRLKETLKAIIKITGNDRKIVLCRELTKRFEEFLRGTVEDALNW
                     AMDEEVRGEFCLIIEGNANPPLAEEQLWWQELDIKTHVSTVMEQENVSSKDAIKTVMK
                     ARNLPKREVYSAYHEIK"
     gene            complement(4927..5196)
                     /locus_tag="IBJ56_002013"
     CDS             complement(4927..5196)
                     /locus_tag="IBJ56_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HAM3418263.1"
                     /translation="MAKASEHFFYVLKCSDNSYYGGYTTDVIRREAEHNAGIRCKYTK
                     TRRPVKVIHFEKFETRSEATKAEAAFKKLSRKNKDAYLIQREESE"
     gene            complement(5180..5932)
                     /locus_tag="IBJ56_002014"
     CDS             complement(5180..5932)
                     /locus_tag="IBJ56_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HAM3418264.1"
                     /translation="MEKLELIGDERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYL
                     PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEII
                     EYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVA
                     ASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKDG
                     KPGVKYVPPVIVYDELGEYTPVIKEILYGESE"
     gene            complement(5990..6379)
                     /gene="yabA"
                     /locus_tag="IBJ56_002015"
     CDS             complement(5990..6379)
                     /gene="yabA"
                     /locus_tag="IBJ56_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HAM3418265.1"
                     /translation="MDKKAIFDSVSNMEEQIGELYQQLGDLKTNLGEMLEENNRLNLE
                     NEHLRRRLSLTDEATPEPKAEIEAEHGVMAPNRKEAMQQMIELGEGYDNLVQLYKEGF
                     HVCNVHFGSPRGNDEDCLFCLSLLNKK"
     gene            complement(6390..7223)
                     /locus_tag="IBJ56_002016"
     CDS             complement(6390..7223)
                     /locus_tag="IBJ56_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage 0 sporulation family protein"
                     /protein_id="HAM3418266.1"
                     /translation="MLKIVGVRFKDVGKIYYFSPGELEITENQGVIVENAQGIEFGKT
                     VIEPRYVDEEDVVLPLKKVLRIATEADYKCVAENGDSCQKAFLLCDEKIRERELEMSL
                     VDVDYTFDRNKIIFYFTAEGRVDFRELVKDLASVFRTRIELRQIGVRDEAKLLGGIGP
                     CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYEQAKRE
                     MPDVGVKVKTPEGIEARVSGINLLSRILQVSLPEEETVIEYELDELRPYNEFLKQPAK
                     S"
     gene            complement(7229..8221)
                     /gene="holB"
                     /locus_tag="IBJ56_002017"
     CDS             complement(7229..8221)
                     /gene="holB"
                     /locus_tag="IBJ56_002017"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HAM3418267.1"
                     /translation="MGLQDELTVMQPVVMKIFSKSVRENRLSHGYLFEGARGTGKKRT
                     ALWLAQSLFCLESTETELACGKCANCTRIASHNHPDVHLLEPDGASIKIDQVRALKQE
                     LSKRGMESDQKVVIIYDAEKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQS
                     RLQPVTFKSLTFDSLLASLTAAGISEQKARIYASITGSVEEAKAFEESEWFSEARNVV
                     IKLYEGIHHQGTSPLIIIQESWMPLFKEKDKMALGLELLLLLYRDRLHLTLDENYEPI
                     CTAQKEMLGQDALRKSLSETTGEIEKILAAKSKLDSNMNTQLLMEQLVLEIQGR"
BASE COUNT         2411 a         1736 c         1429 g         2661 t
ORIGIN      
        1 aaataatgtt taataagaaa aaaactatcg ctagccttat agttttaagt tctctagcta
       61 gtcaaatagc acttacacct atttctgcac ttgctgatac tcacgataca aataatattg
      121 cattactaca aaataccaat gagaatgtcc catataaata cacatccact cttacatttc
      181 caactttaac gaatcaaacc caggaagact ataaactgga aataaaatta gccctaccaa
      241 ctggcatgaa ctatacgggc ttgcaggttt ctgttggtgg ggaagacatt acaaaccaag
      301 ttgggacaac tagctttgac aattccacta acactgttac ttttaaattc gacaaagtaa
      361 caagttggga tagtttatcc aaagcaaaag taaagttcga ctggaaaact tcttattcag
      421 gtgaaggcgg ggaagcaaaa atcgattctt tagttgcgac cgcaacagct acaagcgaag
      481 acaaagctgg taacaaatct acctctactg gctctttaaa accaaaagat attagcgcac
      541 cagttgtcaa agcagataaa acagaggtta cgtataatct tggaagcaac gttaccgaag
      601 agcaattttt aacagacatt aatgctagcg ttactgataa ttatgactcc actattagtc
      661 ttacaagcaa ttttacttcc atagttaatt tagcagtgag tggtgattac tcggtcaatg
      721 ttcaagcaac cgataaagct ggcaacgtct caaatactgt aaatgtcacc gttcatgtag
      781 caactccggc acctgtagcc ggagcgaaca taacggtcaa ctatcttgat agcgatggaa
      841 ataaactcgc agaatcagac acattgacgg gaactatcga tagtaattac caatctacaa
      901 gtaaaaaaat tagcgggtac actctagaaa ccacaccaaa aaatgcaact ggtactttca
      961 ctgatacccc gcaaaccgtt gattatattt ataaaaaaga taccgttacc ccaacaccta
     1021 tagttgatcc ggtcaatcca gttgacccgg ttgacccagt aaatccggtt gatccagttg
     1081 accctgtagt aaataaacca gtcattgtga caccaaatac ggatcaagtt actactagta
     1141 attcagtaga aaaaacaact tataattctt taccgaaaac gggtgataca gatcaaagta
     1201 cagcaacaac tattttcgga gcattgcttc ttttaatcag cgccccatta cttttattta
     1261 aaaagaaata actaaaatca cctcgtaaaa tttttacgag gtgatttaaa aatagtccta
     1321 ttacaataca aaaagtgtaa gtgtttttat ttttatatac aagaaagcta agtatgttac
     1381 cacccaaaat tggtaattgc atacttagct ttttaggttt attttataac ttccagcggt
     1441 ggtaagaata ctttcccttc caacacttct tttttcggaa catatagtcg gaaatttagt
     1501 gaaaactctt ttccagcctt gcttggtagc cagtttcccg gatctacatc agctggtttt
     1561 tctgacgcaa tgtagagcgt caagctgcca tcttcactta gttttggacc tgagtaatta
     1621 ttgatgcaga atttgtttaa tttatttggg ataacgtggt aatctggaac actgtataag
     1681 gtaacggacc aaaaagcatc tgccagttct gatggaagtt catctgccgg aaaatagatt
     1741 ttataaactt tatcgccagt taataactca ttatccgtac ctttttgacc gatgaagtat
     1801 agtgcttctt gaatagaatt cgcccaaata ccgccgtaat taatgattgc tcgcgctaaa
     1861 atatcatttt cgaacgcgcc agctacgtaa gtaacagacc atccgccttt ttgtgtacca
     1921 aatccttttg caccatttgt aaaatatgga atggcttctt tcacaattaa gtttcttact
     1981 tcagcttttt gctcatcacc aagctcgata taggctgcca cttgtcttgc tttatcttgg
     2041 aattcagttg ctcttggcat tttatctgga taagttgcta gtagttcttc caaattggaa
     2101 taaatttctt ctaataagaa ctctgcatta gtgaaatgtg gaatctcaag tggttctttg
     2161 atttttatat tgtctggtgc atcgaatttg aatgcttttt gaagttttac tgcaccttca
     2221 ggatcgtctt tttgttctac gcgaagaagt acttttactt tctctgatgg taattcgatt
     2281 tttacagcgt cacttggaac ggaaggattt gttccttttt taacgaaagc aaattttcca
     2341 tgtggatgct ctggatagtt acgttcattg atatttgtta ccacttcgcc ccagccgtct
     2401 aaaagttgca cagtatagta gcgattttta atttctggta cttctaaaat aacggcattt
     2461 tcgtcatcta cagctatcca agcttctgaa taaaccacat caaagttcgg atttacaaaa
     2521 tttgcatctg ctggtgaaat cgaattgtgc ttaagtgtgt tatatggaat tttatcttct
     2581 tttgtatcaa aattttcttg gcgtaaaacg agatatcgcg ataataaata aacataggat
     2641 tcttttacaa cctcagcatt tacttctaaa ttcgcattca ttatcagtat aaccaccttt
     2701 aatttagatt aatttaagta tagcattgta tcctctcgaa agctgttctt agctttttgc
     2761 aattccaatc atcgtaccac cgataattac taagacaacc ccgataatga ccagaataag
     2821 ttctttcttg gttttcttct ctcctaggaa aaggattcca ccaatggtcg aaatgacaac
     2881 acccatttgt gagagcgaaa aacctgtagc gattccaact aatttatttg agaatagtag
     2941 agccaagtta ccagtagccc acatcacccc tggaatcata tttaaccagg tttgctttgt
     3001 aaaacgtttt tcttcagact taatagaaaa taataatcct gcgactacca tcccaattgc
     3061 ttgaggtaaa atcgcgtccc acccactaat atcaaaccaa cgagtgataa cgacatatcc
     3121 tacataacct acggatgaaa taagtaaagt gataattcct tttttcatat tttggccgga
     3181 attttcgtct ttatgttgtt gataacttgt taagaaaatc ccgataataa ttaatgctaa
     3241 tgcggaaaat cctaatacta atttggaagt tgtaccccat tcatgaaaag caaatacacc
     3301 aaaaagcgat gtacctacta actgcattcc tgtcgaaagt ggcattgttt ttgatacgcc
     3361 tacttgtgta aatgcccgga actgattcat ttgacctaag ctccaaaatg cccctgaaat
     3421 aaaactagca ataataatgg ttgctgtata ttctggattt gtaaaaataa aaactccgat
     3481 tgcgaaagct agtgcgccga atgttgtacc aatgatttgc tgcctcggtt taccgccaat
     3541 ttttgaaaca actaatggca taatccccca catcactgcc ggaattaatg cgataactat
     3601 gttcattttt attcccccta attcttctgc ttatggtcta tacccttttc ctcatgaaat
     3661 cattcctatt cccgtaatta tctgttaaaa tgaattaaaa ttatcaagaa ggtgagaaaa
     3721 tgaaatcaac tggaatggta agaaaaatcg acgaacttgg tcgtgtggtt ataccgattg
     3781 aaataagaag aacgatgaac ctaaatgtaa aagacccttt agaaatattt acagatgaag
     3841 atgcgattgt attgaaaaag tattccgctg gcttggtttg tgacgttacc ggagaatttt
     3901 ctgttgataa caagaaattt gtggacggta aattgacact cagtaaagaa ggcgctgcgg
     3961 aattaatgga agaaattaaa cgccgctttg gtgatacatt ataaaaaaaa tcatgcgcga
     4021 gttcccatta aaggattcgc gcatgatttt attttatttc atgataagca gagtaaactt
     4081 ctcgttttgg taaatttctc gctttcataa ccgttttaat tgcatcttta gaactaacat
     4141 tttcctgttc cattacggtg cttacgtgcg ttttaatatc gagttcttgc caccagagtt
     4201 gctcttctgc aagcggtgga ttggcatttc cttcaataat caagcaaaat tctccgcgaa
     4261 cttcttcgtc cattgcccag tttaacgcat cttcaaccgt tccacgtaaa aattcttcaa
     4321 atctttttgt gagctctcga cacaagacaa ttttccgatc atttccagtg attttgatga
     4381 ttgcttttag tgtttctttt aaacgatgtg gtgattcata taaaatccac gtttcttcgc
     4441 gcgccgctaa tttttcaatc gcttgagtac gttctttatt ttggcgtgga agaaatccgt
     4501 aaaagtaaaa cggctgcggg gcaagaccag atgcaatcag tgcagttaat gcagcattgg
     4561 ctcctggtag agggatgaca ggaatattag catttagcgc actttgaaca agttcgtatc
     4621 ccgggtcaga aatagatggc atccccgcat cactaacaag cgccaccact tcaccgtcta
     4681 acatccgctg aataatatta tcttctttat tttccttcgt aaactgatgg tagctcgtca
     4741 ttcgggttgt aatttcaaaa tgatttaaaa gtttcacggt gttccgcgta tcttccgctg
     4801 caataatatc cgcttcttta agcatgcgaa ttgcacgaaa agtcatatct tctaaattac
     4861 caatcggcgt tggcactaaa tataatgctc cttggctggc tccactgaaa ctcttttggc
     4921 tttttatcat tcggactcct cccgttgtat taaataggcg tctttatttt tacgtgataa
     4981 ttttttgaac gcagcttctg cttttgtagc ttcacttctt gtttcgaatt tttcaaaatg
     5041 aatgactttt accgggcgac gtgtttttgt atatttacat ctaattcccg cattatgttc
     5101 cgcttctcgg cgaataacat ctgttgtata gccaccataa taggaattgt cactacattt
     5161 tagcacataa aagaaatgtt cactcgcttt cgccatataa aatctcctta attactggtg
     5221 tatattcccc tagctcatca tatacgataa caggtggtac atatttcaca ccaggttttc
     5281 cgtctttgat tccttctaca agcaccgtat tcgcttctct atctgagcgc gggtgcacga
     5341 attgaatgcg tttcggttcc aagcgatatt ttctcattat atcaatgatg tctagtaatc
     5401 gttccggacg atgaacaaaa ttcgcttttc caccttgttt taaaaggctt gcggctacac
     5461 gaatagtatc ctctagcgta cacataactt catggcgagc aatccgaaaa tgttcattgg
     5521 tatttttcaa acttgtatcc ggggttgcaa aataaggtgg attacaggta acaatgtccg
     5581 cgcgctcttt tggaataaga tctgtaattt ttttcaaatc atattcgatt atttcgattt
     5641 ggtcttccag ttgattataa gcaacacttc ttttcgccat atctgccaga cgttcttgaa
     5701 tttcaacacc aactattttc gcttttgttc gcgtactaag tagtaaagga ataatcccat
     5761 ttccgctaca caaatcaatt attttccctt tacggattgg taaataacta aatttagcga
     5821 ggagaaccgc gtctatcgag aaagaaaata ccgatgggct ttgaataatc cgcaaatttt
     5881 ctgctagtaa ataatctagt ctttcatcac caattaattc gagtttttcc aaatgattca
     5941 ccttttctag caaaaagccc ttctcttgaa ttgagaaagg cccgtcatgt tattttttat
     6001 tgagcaagga taagcaaaat aaacaatctt catcattacc acgcgggctg ccgaaatgta
     6061 cattgcaaac atgaaatcct tccttgtaaa gttggacaag attgtcataa ccttccccaa
     6121 gttcaatcat ttgctgcatt gcttccttac gattaggcgc catcacaccg tgttccgcct
     6181 ctatttcggc tttaggttct ggtgtcgctt catccgtcaa agaaagtctg cgtcgcaaat
     6241 gttcgttttc aaggtttaat cggttatttt cttccaacat ttcgcctaag tttgtcttta
     6301 gatctccaag ttgctgatac aattcgccaa tttgctcctc catattactg actgagtcaa
     6361 aaatagcttt tttatccaat tttttcacct caagactttg ccggttgttt tagaaattcg
     6421 ttatatggac gtaactcatc caattcgtat tctataaccg tctcttcttc gggcaaactc
     6481 acttgtagga ttctagacag caagttgatt cccgaaacac gtgcttctat gccttctgga
     6541 gtttttactt ttacaccaac atctggcatt tcacgtttag cttgctcata ttcatcgttc
     6601 tcatatttca agcaacacat taatcgtcca cataaaccag aaattttcgt tgggttaagg
     6661 gacaggtttt ggtctttcgc cattttgatg gaaactggtt cgaaatcacc taagaaagtg
     6721 gagcagcaga gcatacgacc gcatgggcca atcccaccga gcaatttcgc ttcatcacgt
     6781 acaccaattt ggcgaagttc gatgcgagtc cgaaaaacag atgctaaatc tttcacgagc
     6841 tcccggaaat cgacgcgacc ttctgcggtg aaataaaaaa tgattttatt acggtcaaat
     6901 gtgtaatcaa catcaactaa actcatttca agttcgcgct cgcggatctt ttcatcacaa
     6961 agtaaaaagg ctttctgaca cgagtcgcca ttctcagcaa cgcatttata atccgcttct
     7021 gttgcgatac gcagtacttt cttaagtggt aaaacgacat cttcttcgtc cacgtagcgc
     7081 ggttcaatga ctgttttacc aaattcaatt ccttgtgcat tttcaacaat aacaccttgg
     7141 ttttctgtga tttccagttc gccaggtgag aaataatata ttttaccaac gtctttaaaa
     7201 cggacgccta caattttaag catagcgatt acctcccttg gatttccaga actaactgct
     7261 ccattagaag ttgcgtgttc atattggaat ccagttttga tttcgcagcg agaatcttct
     7321 cgatttcccc tgtggtttcg gacagtgatt tacgcagcgc atcttgtccg agcatttctt
     7381 tttgcgcagt acaaataggt tcgtagttct cgtcaagtgt aaggtgtagc cggtcgcggt
     7441 acagcagtaa caataattcg agcccaagcg ccatcttatc tttctcttta aaaagtggca
     7501 tccatgattc ttgaatgata attaatgggc tggttccttg atggtgaatt ccttcatata
     7561 acttgatgac aacatttctt gcctcactaa accactcact ctcttcaaaa gccttcgctt
     7621 cttccacact cccagtaatg ctagcataaa tccgcgcttt ttgttcggaa atgcctgctg
     7681 ctgttagtga tgcgagtaaa ctatcaaaag tcagtgattt gaatgtgaca ggttgcagtc
     7741 ttgattgaat cgttggcaaa atttgcccgg ggtttgttgt taaaaataat aataacaaac
     7801 cgccttctgg ttcttctata aatttcagca gactattggc tgattgaaca gtcatttttt
     7861 ctgcatcgta aatgataact actttttgat ccgattccat tccgcgttta ctaagttctt
     7921 gcttcagcgc gcgaacctga tcaatcttaa tactagctcc atctggctct agcaaatgaa
     7981 catccggatg attatgactt gctattctcg tgcaattggc acacttccca caagcaagct
     8041 cggtttcagt gctttctaaa caaaaaagac tctgagctaa ccaaagtgct gtgcgtttct
     8101 tgcctgtacc tcttgctcct tcgaataaat agccgtgaga taatcgattt tcgcggacac
     8161 tttttgaaaa aatcttcatg accactggtt gcatcactgt aagttcatcc tgtaatccca
     8221 caaaaaactt cctttct
//
LOCUS       DABQVC010000127         8039 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.127,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000127 DABQVC010000000
VERSION     DABQVC010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8039
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.127"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..428
                     /locus_tag="IBJ56_002018"
     CDS             <1..428
                     /locus_tag="IBJ56_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HAM3418268.1"
                     /translation="RTGEVIVQSYNPEHYSIEFAKKHDFIGFYNHEMQLRKMGSYPPF
                     YYLTMINVSDENEMKAIRTIQEMAQFLRGKLGPDAVILGPVPSTITRIKNKYRYQCII
                     KYKIEPNLKKELKTLITHYQKDQQKGLTITIDVQPYVLM"
     gene            442..1380
                     /locus_tag="IBJ56_002019"
     CDS             442..1380
                     /locus_tag="IBJ56_002019"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HAM3418269.1"
                     /translation="MTKIIFMGTPEFSVPVLTQLASTYDVVAVVTQPDRPVGRKRVLT
                     PPPVKKAALELAIPVYQPEKLRTSSELEELIALEADLLVTAAYGQILPNSLLESPKHG
                     AINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKLDAGDMISQRKIPITDEDN
                     TGTMFDKLSKLGAELLMDTLPDFLAGKITAIPQDPEKVTFARNISREQEKIDWTKPGR
                     TIFNQIRGLSPWPVAYTTLEEKPFKIWEATYEETKEGGEPGAILADKTTLKIVAGDGT
                     LIVPTVIQPAGKPKMDVHSFMTGAGRNLSKTTRFGE"
     gene            1381..2715
                     /gene="rsmB"
                     /locus_tag="IBJ56_002020"
     CDS             1381..2715
                     /gene="rsmB"
                     /locus_tag="IBJ56_002020"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HAM3418270.1"
                     /translation="MKKQKTVRAIALELIIKIENNQSYSHLLINDALKKQKLNPLDKG
                     LLTELVYGTTQRKITLDYYLAPFLNKEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEA
                     GDIAKDLGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQ
                     YGIEKLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEK
                     GSVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTG
                     MVHALDIHEKKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGF
                     GVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL
                     RAFLEKHPEFTLEPVVLPEKLAQIKKDDFIQLLPTDIGSDGFFVSSLRKVKS"
     gene            2738..3496
                     /locus_tag="IBJ56_002021"
     CDS             2738..3496
                     /locus_tag="IBJ56_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HAM3418271.1"
                     /translation="MHAEFRTDRGRIRHHNEDNGGVFENKDNQPIVIVADGMGGHRAG
                     DVASEMAVRLLSDAWKETTALLTAEEIETWLQKTIQEVNKEIVLYSESEMDLNGMGTT
                     LVAAIMAQSQVVIANVGDSRGYLLQNHVLRQLTEDHSLVHELLRTGEISKEDAMNHPR
                     KNILLRALGVEGKVEVDTFVVPFQTSDTLLLCSDGLTNMVPETEMEEILKSKRTLSEK
                     ADVFITKANSYGGEDNITVLLVERDLTQKGRDAS"
     gene            3493..5460
                     /gene="pknB"
                     /locus_tag="IBJ56_002022"
     CDS             3493..5460
                     /gene="pknB"
                     /locus_tag="IBJ56_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HAM3418272.1"
                     /translation="MMIGKRLSDRYKILHAIGGGGMANVYLAHDIILDRDVAVKILRI
                     DLADESNLIRRFQREAQSATSLVHPNIVSVYDVGEENDLHYIVMEHVDGMDLKQYIHE
                     NHPISYDKAVDIMLQIVSAVAIAHQHHIIHRDLKPQNILIDHDGVVKITDFGIAMALS
                     ETSITQTNSLLGSVHYLSPEQARGGMATQKSDIYSLGIVLYELLTGKVPFDGESAVSI
                     AIKHLQADIPSARAQNPEIPQSLENIIIKATAKDPFLRYQNAEEMEKDLQTCLNQDRL
                     NEPKYIFPTDDGDTKAIPIIATKDTMQNLDKTIVPEGKVAAAEVAPEENKGKKKKKMS
                     KKKKIALIVSSVIIIFIIGILLLWLLGKSPDEVAVPDVSGKTEDQAVALLQKEGFVIG
                     KTAEKNSDEVAEGKVINTDPEAGEMKEKGTKINLFVSIGSKKITMDDYTGRSYTDTKA
                     LLEEQGFNNISSEEAYSSEVEKGLIISQTPTQGTDVVAKSTDVKFVVSKGAEPISLKD
                     LRGYTKTAVEDYASPLGLKVSSKEENSNTVEKGQVISQSPSAGTAMNPGDTIEIVISA
                     GPKEKQVKEVTKTFNIPYTPSDEENPQPQKIQIYIQDKDHSMTSAYREMSITQNTSVE
                     ITFQIEEGSSAGYKIISDDKVIDEGTVPYPN"
     gene            5479..6354
                     /gene="rsgA"
                     /locus_tag="IBJ56_002023"
     CDS             5479..6354
                     /gene="rsgA"
                     /locus_tag="IBJ56_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HAM3418273.1"
                     /translation="MLEGQIIKALSGFYYVFSEGKVYQCRARGNFRKRNISPLVGDDV
                     EFQIENKTDGYILDVMSRENALVRPPVANIDIAILVFSAVEPDFSTNLADRFLVAIEK
                     EDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVTNDEPDKEAIKDYISGKTA
                     VIAGQSGVGKSTLLNSLNSDLTLKTAEISNALGRGKHTTRHVELMPIGDGFVADTPGF
                     SSIEWDDLQPETLQFCFPEMEDRRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKH
                     YIQILQELKNRKPRY"
     gene            6357..7013
                     /locus_tag="IBJ56_002024"
     CDS             6357..7013
                     /locus_tag="IBJ56_002024"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HAM3418274.1"
                     /translation="MGKIAPSILSADFANLARDIKEVENCGADYIHIDVMDGHFVPNI
                     TFGPAVVQAIRPETKLPLDVHLMIENPDTYIPEFAKAGADYITVHVEACTHLHRTLQL
                     IRSYGVKAGAVLNPATPIDVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKK
                     IVDEKGLDIEIEVDGGVDHETAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE
                     "
     gene            7077..7721
                     /locus_tag="IBJ56_002025"
     CDS             7077..7721
                     /locus_tag="IBJ56_002025"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HAM3418275.1"
                     /translation="MKIINIMVGGPASEIPDLAQYTSAEISWVGVDRGAKRLLDHGIV
                     PTVAMGDFDSLSKEELAHLKTKVADVHEFPAEKDETDTEIGLSWAMEQNPDKIRIFGA
                     TGGRLDHLLANLMMLTKPKFLSAVPVVEMIDRHNYIKMYMPGSYTIEKLPDKKYVAFT
                     TMKDVTGLTLKGFAYPLENATYPVGSALSSNEFVGQMGEFSFKSGMILLTQSND"
     gene            complement(7818..8006)
                     /locus_tag="IBJ56_002026"
     CDS             complement(7818..8006)
                     /locus_tag="IBJ56_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HAM3418276.1"
                     /translation="MAKECVITGRKSRSGNKRSHAMNSSKRTWKANLQKVRILVNGKP
                     KKVWVSARALKSGKVERV"
BASE COUNT         2818 a         1466 c         1667 g         2088 t
ORIGIN      
        1 agcggacagg agaagtcatc gttcaaagct ataacccaga acattacagt attgaattcg
       61 ccaaaaaaca tgatttcatc ggtttttata accacgaaat gcagctacga aaaatgggtt
      121 cctacccgcc attttattac ttaaccatga ttaatgtcag cgatgaaaat gaaatgaaag
      181 cgattcgaac cattcaagaa atggctcagt ttttacgagg aaagctcggt ccagatgccg
      241 tgattcttgg ccctgttcct agcaccatca cgagaattaa aaacaaatat cgctaccagt
      301 gcattattaa atataaaatc gaaccaaact taaaaaaaga actaaaaaca ctaattaccc
      361 attatcaaaa agaccaacaa aaaggtttaa caataactat tgacgtacag ccttacgtac
      421 taatgtaaaa ggagcaaacc aatgactaaa attattttta tgggaacacc ggaattttct
      481 gttccggttt taacgcaatt agccagcaca tatgatgtag ttgcagttgt gacacagcca
      541 gatcgcccag ttggacgcaa acgagttttg acaccaccgc cagtaaaaaa agctgcttta
      601 gaactagcta ttccagttta tcaaccagaa aaattacgga catctagcga attagaagaa
      661 ctaattgctc tagaagccga cctacttgta acagcagctt acggacaaat tttaccaaat
      721 agtttgcttg aatcaccaaa gcatggtgcg attaatgtgc atgcatctct tttaccagag
      781 tatcgcggag gtgctcctgt acactacgca ctgcttgacg ggaaaacgga gacaggcgtt
      841 acgattatgt atatggtaga gaaattggat gctggggata tgattagcca gcgtaaaatt
      901 cccatcacag atgaagataa tactggcacc atgtttgata aattgagcaa attaggcgca
      961 gaattattaa tggacacatt acccgacttt ttagctggaa aaataacggc aatcccacaa
     1021 gaccctgaaa aggtaacctt tgcacgcaat atttctagag aacaagaaaa aatcgactgg
     1081 acaaaaccag gacgtactat ctttaatcaa attcgaggat tgtctccttg gccagtggct
     1141 tatacaacac tggaagaaaa accatttaaa atctgggaag caacttatga agaaacaaaa
     1201 gagggcggcg aaccgggtgc cattttagca gataaaacaa cgcttaaaat cgtagcaggc
     1261 gacggcacgc tcatcgtacc aacagtaatc caaccagcag gaaaaccgaa gatggatgtt
     1321 cactcattca tgaccggagc tggcagaaat ttaagcaaga cgacaaggtt tggtgaataa
     1381 atgaaaaaac aaaaaacagt tcgtgcgatt gcattagaac tcatcattaa aatcgaaaat
     1441 aatcaatcat acagccactt attaattaat gacgcattaa aaaaacaaaa gttaaatccg
     1501 cttgataaag ggcttttgac tgaattagta tatggtacaa cacaacgcaa aattacactt
     1561 gattactatt tagcaccgtt tctcaataaa gaacccgaca attgggtgaa aaacttacta
     1621 agaatgtccg tttatcaatt aaccttttta gataaagttc ctgagcatgc gattttaaat
     1681 gaagctggtg acatcgcgaa agatttagga caccaaggtg taactaagtt cgtcaacggc
     1741 gtattgcgta atgttattcg aaaaggcgta ccaagtattg atgccatcaa agaccctgtg
     1801 caaaaaatcg ctgttgaaac aagtctgcca gaatggttag caaaaaggtg ggcagatcaa
     1861 tatggtatcg aaaaactgcg tgaaatcggt ttagcattcc ttgtcgcgcc acaccaaagt
     1921 atccgcgtca accaaacaga aattcctact gaacaattaa tcaaagaact aaatgaccaa
     1981 ggaatcaccg tgacacgtaa tgaatttatc gaggaagcgt tacttgttga aaaaggatct
     2041 gtagcagaaa caaaagcata caaagacggt aaatgtagca ttcaagacga aagctcaatg
     2101 ctcgcagcct atgcgcttca actagaagac aatttgacgg tattagatgc ttgtgcggca
     2161 ccaggcggga aaacaaccca tatcgcggaa aaaatgcacg gcacgggaat ggttcatgca
     2221 ctcgatatcc acgaaaagaa aaccaagcta attgatcaag ccgccaaacg attgcaacta
     2281 cttaatattc gtacggcgca tttagacgca agaaccgcaa gtaccatgtt tgaaccagaa
     2341 acatttgacc gtattttagt ggatgctccg tgctctggct ttggcgttct tcgcagaaaa
     2401 ccagacatta aatacgcaaa aacagaaaaa gatatccaca aattagcaga aattcaatta
     2461 gcgattttag atgatgttag ccaattagta aaagaaaatg gtatattagt ttatagtact
     2521 tgtaccattg acaaggaaga aaatgaaacg gttcttcgcg ctttcttaga aaaacatcca
     2581 gaattcacac tagaacctgt agtactccct gaaaaattgg cgcaaatcaa gaaggacgat
     2641 tttattcaac ttttaccaac agatattgga agcgatggtt tcttcgtttc tagccttaga
     2701 aaagtgaagt cctgaaaaat agtgaggtgc ttttaaaatg catgcagaat ttagaacaga
     2761 tagaggcaga ataagacatc ataatgaaga caacggcggg gtttttgaaa ataaagataa
     2821 ccagccgatt gtcattgttg cagacggcat gggtggtcac cgggcaggag acgtggcaag
     2881 cgaaatggct gtgcgtctac taagcgatgc atggaaagaa acgaccgcac ttttgaccgc
     2941 agaagaaatt gaaacttggc tacaaaaaac aattcaagaa gtcaataaag aaattgttct
     3001 ttattcggaa agtgaaatgg atttaaatgg tatgggaaca acacttgttg cagcaattat
     3061 ggcgcagtca caagtcgtta ttgccaacgt aggagatagc agaggttatt tacttcaaaa
     3121 tcatgtctta cgtcaactaa ccgaagatca ttcactagta catgaactcc ttcgaacagg
     3181 cgaaatcagc aaagaagatg ccatgaatca tccgcggaaa aatattcttt tacgcgcact
     3241 tggtgtagaa ggaaaagtag aagtggacac atttgttgtc ccttttcaaa cgagcgatac
     3301 gttactactt tgttccgatg gtttaacgaa tatggttcca gaaacagaaa tggaagaaat
     3361 tttaaaaagt aaaagaactc tttctgaaaa agcagatgta tttattacaa aagctaattc
     3421 ttatggggga gaagataata taactgtgct gttagtcgaa cgagatctga cgcagaaagg
     3481 gagggatgct tcatgatgat tggtaagcga ttaagtgatc gatataaaat tttacatgca
     3541 ataggcggcg gcggaatggc caatgtgtat ttggcgcatg atattattct tgatagagat
     3601 gttgcagtaa aaattttacg aatcgattta gctgatgaaa gcaaccttat tcgtcggttt
     3661 caacgggaag ctcaatcagc aacgagcctt gttcacccta atattgttag tgtttacgat
     3721 gttggtgaag aaaatgattt acattatatt gtaatggaac atgtggatgg aatggattta
     3781 aaacagtata ttcacgaaaa tcacccaatc agttacgata aagctgtaga tattatgctt
     3841 caaatcgttt ctgcggtggc aattgcccat caacatcaca ttattcatcg tgatttaaaa
     3901 ccacagaata ttttaatcga tcatgatggc gtagtgaaaa ttactgattt tgggattgcg
     3961 atggcacttt cagaaacatc catcacacaa acaaattctt tgttaggttc ggtgcattac
     4021 ttatcaccag aacaagcacg tggtggaatg gctactcaaa aatcagacat ctattcacta
     4081 ggaatcgtgc tatatgaact attaactgga aaagttcctt tcgacggtga gtctgcagtt
     4141 tctattgcta ttaagcattt gcaagcggat attccatcag caagagcgca aaatccagaa
     4201 attcctcaaa gcttagaaaa tattatcatt aaagcaacgg caaaagatcc atttttacgt
     4261 tatcaaaacg cggaagaaat ggaaaaagac ttgcaaactt gtttaaatca agaccgttta
     4321 aatgagccta aatatatttt cccaacagat gatggtgata caaaagcaat tccaatcatc
     4381 gcaacgaaag acacgatgca aaaccttgac aaaacgattg tcccagaagg aaaagtagca
     4441 gcggctgaag ttgctcccga agagaacaaa ggtaagaaaa agaaaaaaat gagtaagaaa
     4501 aagaaaattg ctctcattgt ttcttctgtc attatcattt ttatcatcgg tattttacta
     4561 ctgtggcttt taggcaagag ccctgatgaa gtcgctgtgc cggatgtttc tggtaaaacg
     4621 gaagaccaag cagtagcgct actccaaaaa gaaggctttg tcataggtaa aacggcagaa
     4681 aaaaatagtg atgaagtagc ggaagggaaa gtaattaata ccgacccaga agctggagaa
     4741 atgaaagaaa aaggaacaaa aatcaattta ttcgtaagca ttggttctaa aaaaataact
     4801 atggacgact atacaggaag aagctacaca gatacaaaag cgttacttga agaacaaggg
     4861 tttaataata tttcttcgga ggaagcatat agttctgaag ttgaaaaagg cttaattata
     4921 agccaaacac cgactcaagg aacggacgta gtcgctaaat ctaccgatgt gaaatttgtc
     4981 gtaagtaaag gtgcagaacc aatttcgctt aaagatttac gcggctatac caaaacagct
     5041 gtagaagatt atgcctcacc acttggactc aaagtttcaa gtaaggaaga aaattcaaat
     5101 acagttgaaa aaggacaagt tatttcgcag tccccatcag ctggaactgc aatgaatcct
     5161 ggtgatacaa tcgagattgt catttctgca ggaccaaaag aaaaacaagt caaagaagta
     5221 actaaaacat ttaacatccc atatacacca agtgatgaag aaaacccaca accacagaaa
     5281 attcaaatct acattcaaga taaagaccat agcatgacta gcgcttaccg agaaatgagc
     5341 attacacaaa atacctcggt agaaataact ttccaaattg aagaaggttc tagcgcaggc
     5401 tacaaaatta tcagtgatga taaagtaatc gatgaaggta cagtccctta tccaaattaa
     5461 aaatagaacg gaggaaatgt gctggaagga caaattatca aagcgttgag cggattttac
     5521 tatgtatttt cggaaggaaa agtatatcaa tgtcgagcaa gagggaattt tagaaaacga
     5581 aatatttctc cacttgtagg cgatgatgta gaatttcaaa tagaaaataa aacagatggt
     5641 tacattttag atgtaatgtc ccgggagaat gcccttgtgc ggcctcccgt ggcaaacatt
     5701 gatattgcaa ttttggtgtt ttcggcagta gagccggatt tttccacgaa tcttgcggat
     5761 cgttttttag tagctattga gaaggaagat atcaagccag ttatttgcat tagtaaaatg
     5821 gacttggcat cagaatctga aaaagaacag attgctgttt acaaagacat ttacgaagcg
     5881 attggttatg atgtttttgt taccaatgat gaaccggata aagaagccat taaagactat
     5941 attagtggga aaactgcagt tatcgctggg caatctggtg taggaaagtc gactctccta
     6001 aatagcttaa atagtgattt aactttaaaa acagcagaaa tttcgaacgc actcggtcgc
     6061 ggaaaacata caacgagaca cgtcgaacta atgccgattg gcgatggatt tgtcgctgat
     6121 acgcctggct ttagttcaat cgaatgggat gacttgcaac ctgaaacatt acaattttgt
     6181 tttccggaaa tggaagatcg tcgtagtggc tgtaaattcc gaggttgcat gcatgacaat
     6241 gagccgaatt gcgctgtaaa aacagctgtt gaagcaaatg aaatagcaga atttcgctac
     6301 aaacactata tccaaatttt acaagaatta aaaaacagaa agccgaggta ttaagaatgg
     6361 gaaaaatagc tccttcgatt ttaagtgcag actttgcaaa tcttgcaaga gatattaaag
     6421 aagtagaaaa ttgcggtgca gactacattc atattgacgt tatggacgga catttcgttc
     6481 caaatattac atttggtcct gctgttgttc aagccattcg cccagaaaca aaactaccac
     6541 ttgatgttca tttaatgatt gaaaacccgg atacatacat tccagaattt gcaaaagcgg
     6601 gagcagacta cattacggtg catgtcgaag cttgtacgca tcttcatcgc acattacaat
     6661 taatccgttc ttacggtgtg aaagctggcg cagtgcttaa tccagccaca ccaatcgatg
     6721 ttttacaaca cgttttaaat gaactggata tggttctatt tatgacagta aatcctggtt
     6781 ttggcggaca aaaattcatt ccagaagtac tagaaaaaat tagtgctttc aagaaaatag
     6841 tggatgaaaa aggcttagat atcgaaattg aagtagatgg cggcgtggat catgaaacag
     6901 cgaaattatg ccgtgatgct ggcgcaaatg tctttgtagc tggtagttac atttatggaa
     6961 ataaaaatcg tcaaacacca attgataaat tacgtgccat tgtaggcgag taaactaata
     7021 gtagggctgg gacctctgtt ccagtcttat ttgttagggg agaaggggac tcaagtatga
     7081 aaataattaa tatcatggtt ggtggacctg cgtccgaaat tcctgattta gcacaatata
     7141 cgagcgcaga gattagttgg gttggcgtgg accgcggagc aaaacgtttg ttagaccatg
     7201 gaattgtacc gaccgttgcg atgggagatt ttgattcact ctctaaagaa gaactggctc
     7261 atttgaaaac caaagtagca gatgtacacg aatttcctgc agaaaaagat gaaacagata
     7321 cggaaattgg attaagttgg gcgatggagc aaaatccaga taagatacgc atttttggtg
     7381 caacaggagg ccgcttagac catctacttg cgaatctaat gatgttgacc aagccgaaat
     7441 ttttaagcgc tgtgccagtt gtagaaatga ttgaccgtca taactacatc aaaatgtata
     7501 tgccaggtag ctacactatt gaaaaactac ctgataagaa atatgtcgca tttacaacga
     7561 tgaaagacgt gacaggactg acactaaaag gattcgccta cccgctcgaa aatgccactt
     7621 acccagtagg ttcagctcta tcaagtaatg agtttgtggg acaaatgggg gaattttcct
     7681 ttaaaagtgg aatgatttta ttaacacaaa gtaatgatta actagaaata caggtgcact
     7741 cggcctgtat ttttttattt taaggcaaag aaaaaatgca ccgacataat tgtcgctgca
     7801 cttgatttct ccttcaatta aacgcgttcc actttaccag atttaagcgc acgagcagat
     7861 acccaaactt ttttaggttt gccgttaacc agaatccgta ctttttgcaa gttagctttc
     7921 caagtacgtt tgctggagtt cattgcgtgg gaacgtttgt taccggaacg tgatttgcgg
     7981 cctgtaataa cacattcttt agccatagtt tacccctcct tacagagctc ttcggataa
//
LOCUS       DABQVC010000128         7970 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.128,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000128 DABQVC010000000
VERSION     DABQVC010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7970
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.128"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(225..1241)
                     /locus_tag="IBJ56_002027"
     CDS             complement(225..1241)
                     /locus_tag="IBJ56_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAM3418277.1"
                     /translation="MLKMGFIGNGKSTNRYHLPFILERDNIEVKTIYNRNPKTATWDK
                     IEGVHYTTDLDELLKDPEIQLITISTTQSSHFDYAKMVLENGKNVLVEKPFMMTYAEA
                     KEIFELAKERGLLVQCYQNRRFDSDFLTAQKVIESGKLGDLLEVEMHYDYFRPEIPES
                     VHEFKFYDSYLYGHGCHTIDQVLSYFGKPDNIHYDVRQLLGEGRMNDYFDLDLYYGVT
                     KVSVKSSYFRIKARPSFVLYGKKGMFTKETKDRQEEHLKLFYMPSNPDFGIDLPEHYG
                     TLTYVDDAGVWHEEKVISEVGDYGRVYDGLYDAIINGKPKQVTDEETLLQMEILEKGV
                     EACK"
     gene            complement(1445..2965)
                     /locus_tag="IBJ56_002028"
     CDS             complement(1445..2965)
                     /locus_tag="IBJ56_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavocytochrome c"
                     /protein_id="HAM3418278.1"
                     /translation="MKKRLATTFIMLLSLALIIAGCGSNNTSKSDTEKTKEKEKTEVT
                     SGASKTSYTDPSELKDKYDIVIVGAGGAGMSAALEAKAKGMNPVILEKMPLAGGNTMK
                     ASSGMNASETKFQKEEGINDSNDKFYEETLKGGHGTNDKAMLRFFVDNSASAIDWLDS
                     MDIKLNNLTITGGMSEKRTHRPEDGSAVGKYLVDGLLKNVQEQKIPVFVNADVKEITQ
                     KDGKVTGVKVKLNNKDEKTISSDAVVVTTGGYGANKDMIEKERPDLKGYVTTNQEGST
                     GDGIKMIEKLGGTTVDMDQIQVHPTVQQDKSYLIGEAVRGEGAILVSQEGKRFGNELD
                     TRDNVTASINKLPEKSAYLVFDSGVKDRVKAIAQYEEMGFVEEGKTIDELAGKINVPK
                     EELTKTLDTWNASVKNKKDEAFGRTTAMDNDLSKAPYYAIKIGPGIHYTMGGVKINTN
                     TEVLDKDGKPITGLFAAGEVTGGLHGENRIGGNSVAEIIIFGRQAGDKSAEFVKAQ"
     gene            3202..4728
                     /locus_tag="IBJ56_002029"
     CDS             3202..4728
                     /locus_tag="IBJ56_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HAM3418279.1"
                     /translation="MTIKKYEPLNLYTNFKKSAERYPEMPIHFDEELVTFPELGLHTT
                     YKKCEEAIIQKAAHLHKFGVRKEEKVIVYKSAKFDSYILAVAISYIGAVPIMVSPHLP
                     ASTIDIFVNRLDQPWLLFDSETSEKSHQLNNLPDSRLINAEQLFKAPLDGYTCEQEEL
                     PKDMIAYMTHTSGTTGVPKLIAHSANSMGWRTKYQRRILNFIKPRGLVAFHISPVHSR
                     FNIGVSSLMSLGFPLLPIANPTKANVEKVLREYKPYVLETHPNHFVQWASLAREKPDV
                     FQSIKFYHSTFDAINKETMAVFLRTSEYKKPIFLQIYGQSECGPMILRGHTLQSIETL
                     NARDMGIGVPGLTEVRIVDQDGNPVPAGVSGNIQMLSKGRALTYYKEEARFEENVYGP
                     WWDSGDYGMKDEQGRLFLQDRQVDLVETIDSTLAIEDKLLDTLTFLDEVVIIRGENGS
                     PQPIIAVHDDKEMNWDAWWDAVSDLPHMNEPIVMKYDEIPRTATMKVQRLQMERELKK
                     "
     gene            complement(4769..6538)
                     /locus_tag="IBJ56_002030"
     CDS             complement(4769..6538)
                     /locus_tag="IBJ56_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418280.1"
                     /translation="MKSKGRLFLYVVLALSIVIGTNVFIKIDAHAAAAPPAAISQIFP
                     DDALATEIQTTLGKSSTAEVVTQTDLDTINSLTLTSKGISSLEGMNYLTNLGTLILTG
                     NQVSDISPLKGLTNLTMLQLSGNPISDISALSNLKNLQALDINDAQVTDITPLSGLTN
                     LKGLGLYNNQLENLSGVNSLHQLRSLNVSNNKLTNLDELQALSNLSVLYANENQINNL
                     QGLSNLNNLFLLDLSANQIVDTTPLAGLTKVQTLYVSNNQISDVTGLSSLINLDWLDI
                     SQNKISNIRPLNSLTKLTIIQMTNQLIVNEPISFESTVTIPNLIKNIAEQTIDPDTIS
                     DNGVYANEAVTWNLPSYIPKVSYTFIERDTIGNATGNFSGTVEQPLVQYFKATFNIDG
                     QETTENVETGTLLQEPPTPVKEGYTFNGWYDAETGGTKWDFTADTMPANDITLYAQFS
                     INSYTATFDVDGVISTQAVEYQGLLEEPPAPTKDGYTFKGWYDAKTGGTKWDFTNNQM
                     PANDITLYAQFSKDASSGGDGGGTDEGGGNSENSTEGAPNTSDIDTINHIVLPATGDD
                     HVLFPIFIGTFLTSLALLTLRRK"
     gene            complement(6636..7046)
                     /locus_tag="IBJ56_002031"
     CDS             complement(6636..7046)
                     /locus_tag="IBJ56_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418281.1"
                     /translation="MDYIITTDLPNAEEFVKLRVDAGLSFRSIEVSRQALLKSVYFVG
                     LRSKEDNALIGMGRLVGDGIMFIVSDIAVLPEFQGNGYGKLIMTHIKNYIDSNLDKTA
                     CVTLLADVPADGLYKQFGFRESAPASIGMIYQMK"
     gene            complement(7112..7876)
                     /locus_tag="IBJ56_002032"
     CDS             complement(7112..7876)
                     /locus_tag="IBJ56_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAM3418282.1"
                     /translation="MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLE
                     ESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKEAIAKEAATLVKNNQTIILDASS
                     TALALAKELHGFSRLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
                     IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTA
                     SITAAENIDLLITDNKINKALYKKFQDAGLPVKIAE"
BASE COUNT         2227 a         1598 c         1393 g         2752 t
ORIGIN      
        1 attaattaaa ttcgatatat tcataatcca catcctctct caacaaagta agcgcttcac
       61 ttgttgatta cactatatca cgctgaacga cttcattcaa tattatgggt gtattatgca
      121 aaaagttcat ttttagagct attttggttg tttatatgaa cgaaatcaat catttttatc
      181 caaaaaaaat tgcccgcaag cttgctcccg cggacaattt ttcattattt acaagcttcg
      241 acgccttttt ctaaaatctc catttgtagc aaggtttctt cgtcagttac ttgttttggt
      301 ttcccgttaa taattgcatc atacaaacca tcataaacgc ggccgtagtc gccaacctca
      361 gagattactt tctcctcatg ccaaactccg gcatcatcaa catacgtaag cgttccgtaa
      421 tgctctggta aatcgattcc aaagtctgga ttacttggca tgtaaaatag ttttaaatgt
      481 tcttcttggc ggtcttttgt ttcttttgta aacatacctt ttttgccgta aaggacaaag
      541 cttggacgag cttttatacg gaaatagctt gattttacgg atacttttgt tacgccataa
      601 tataaatcaa ggtcgaaata atcgttcatt cgtccttcgc cgagcagttg gcgcacgtca
      661 taatggatgt tgtccggttt gccgaagtaa gaaagtactt ggtcgattgt atggcagccg
      721 tgaccgtata aataactgtc gtagaattta aattcatgaa ccgactctgg gatttctgga
      781 cggaaatagt cataatgcat ttctacttcc aataaatcgc ctaattttcc actttcaatt
      841 actttttgtg ctgtaaggaa atcggaatcg aaacgacgat tttggtagca ttgaacgagt
      901 aaaccacgtt ctttagctag ttcgaaaatt tctttcgctt cagcgtatgt catcataaat
      961 ggtttttcaa caagcacatt tttgccgttt tctaacacca ttttggcata gtcgaagtga
     1021 gagctttgtg ttgtagagat ggtaattaac tggatttctg ggtcttttaa cagctcgtct
     1081 aagtcggttg tatagtgaac cccttcaatt ttgtcccatg tggctgtttt gggatttcga
     1141 ttataaatcg tcttcacttc aatattatcc cgctctaaaa taaatggtaa atgatatcta
     1201 ttcgtacttt ttccgtttcc gataaaaccc attttcaaca tactatttcc tccttatttt
     1261 aacaaactaa caaatttagc ttaaacgctg ctaatttatc agtgtatata tctcagttgt
     1321 tacccatcca tagtactaca ctaacgcgct atttagccaa taaaaaactt gctaaaacgt
     1381 ctgtttaagg cgtcctaaca agtttttatt ttctattaat cacatcacta tggtgtatgg
     1441 gttcttattg tgcttttaca aattctgctg atttgtcgcc agcttgacgt ccgaaaataa
     1501 tgatttcagc gacagagttt ccgccaatac ggttttcccc gtgcaagcca ccagttactt
     1561 ctcccgcagc aaataggcct gtgattggtt taccgtcttt gtctaaaact tctgtatttg
     1621 tattgatttt tacgccaccc attgtgtaat gaattcctgg tccgattttg attgcgtaat
     1681 atggtgcttt agataaatca ttatccattg cggttgttct gccgaatgct tcgtcttttt
     1741 tgtttttcac acttgcattc caagtatcta atgttttagt tagctcttct tttggtacat
     1801 tgattttgcc ggctaattca tcaattgttt taccttcttc cacaaagccc atttcttcat
     1861 attgcgcgat agctttgacg cggtctttca cgcctgaatc aaatactagg tacgcggatt
     1921 tttctggtaa tttgttgatg gaagctgtaa cgttatcacg tgtgtctaat tcgtttccga
     1981 aacgtttacc ttcttgagag actaaaatcg caccttcacc tcgaacggct tcaccgatga
     2041 ggtaagattt atcttgttga acagttgggt gaacttgaat ttgatccata tccactgttg
     2101 ttccaccaag tttttcgatc attttaatac cgtcgccagt acttccttct tggttcgttg
     2161 ttacatatcc ttttaagtct ggacgttctt tttcaatcat atctttatta gctccgtagc
     2221 caccagttgt gacaactact gcatccgaac taattgtttt ttcgtcttta ttgtttaatt
     2281 ttactttcac gccagttact tttccgtctt tttgtgtaat ttcttttacg tctgcgttaa
     2341 cgaaaactgg gattttttgt tcttgaacat tttttagtaa accgtctact aagtatttac
     2401 caacagccga gccatcttca ggacggtgcg tacgtttttc gctcattccg cctgtgatag
     2461 ttaagttgtt taatttaatg tccatggaat ccaaccagtc aatggcgctg gcggaattgt
     2521 ctacgaaaaa acgaagcatt gctttatcgt ttgttccgtg accacctttt aatgtttctt
     2581 cgtaaaattt gtcgttgcta tcattaattc cttcttcttt ttggaattta gtttcagagg
     2641 cgttcatacc agaagaggct ttcattgtgt ttccgcctgc tagtggcatt ttttcaagga
     2701 ttactgggtt catgcctttc gcttttgctt ctagtgctgc ggacattcct gcaccacctg
     2761 caccaacaat aacgatatca tatttatctt ttaattcgga tggatctgtg tagctagttt
     2821 ttgacgctcc cgatgtaact tctgtttttt ctttttcttt tgttttctcc gtgtcacttt
     2881 tgcttgtgtt attgctgcca caacctgcga taattaatgc aagcgatagt agcatgatga
     2941 aagttgtagc taaccttttt ttcattttcg tacctccact tttttgaaaa ttttccccta
     3001 gaccaatagt ttgtgattat attaacatat tatatcacta attgagatat ctttacaggt
     3061 catcaggcga attttccaaa ataagaaaaa aagcaattta cagatttttt tacaatgatg
     3121 taaatgtttt ctattactac tcctcattat ttccacaaag tgatataata gcaacatcaa
     3181 atattaaagg agcatcgcca tatgacgata aaaaagtacg aaccacttaa cctctatacc
     3241 aatttcaaaa aatctgctga acgctatcca gaaatgccca tccattttga tgaagagctt
     3301 gttacttttc ctgaattagg ccttcacact acttacaaaa aatgtgaaga ggctattatc
     3361 caaaaagcag ctcatctaca taaattcggt gtacgcaaag aagaaaaagt aatcgtatat
     3421 aaatctgcca aattcgattc ttatatttta gcagttgcga tttcttatat tggtgccgtg
     3481 ccaatcatgg tttccccgca tcttccagcg tctactattg atatttttgt taatcgcctt
     3541 gaccaacctt ggttactttt tgattctgag acttctgaga aaagtcatca gttaaacaat
     3601 ttaccagaca gtagattgat caatgctgaa caattgttta aagcgccact agatggctac
     3661 acatgcgaac aagaagaatt accaaaagat atgattgctt atatgactca cacttctgga
     3721 acaactggtg tgccaaaatt aatcgctcac tctgcgaatt cgatgggttg gagaacgaaa
     3781 taccaacgac gtattcttaa tttcatcaaa ccaagagggc ttgtagcttt ccatatctca
     3841 ccagtacatt ctcgttttaa tattggtgtt tcatccttga tgtcgctcgg tttcccgctt
     3901 ctgccaattg ccaatccgac taaagcgaac gtcgaaaaag tgctacgcga atacaaaccg
     3961 tacgtactcg aaacgcatcc aaatcatttt gttcaatggg cgtcacttgc tcgtgaaaaa
     4021 ccagacgttt tccaaagtat caaattttat cattctactt ttgatgcgat taataaagaa
     4081 acaatggcgg ttttccttcg tacttccgaa tataaaaaac caattttctt acaaatttat
     4141 ggacaaagtg aatgtggtcc gatgatttta cgtggtcata cgcttcaatc cattgaaacg
     4201 ctaaatgcgc gcgatatggg aattggtgtt cctggtttaa cagaagttcg gattgttgac
     4261 caagatggta atcctgttcc agctggggtt agtggtaata ttcaaatgct ttccaaaggt
     4321 cgcgcgctta cttattacaa agaagaagct cgttttgaag agaatgtgta cggaccttgg
     4381 tgggatagcg gcgattatgg tatgaaagat gaacaaggcc ggttattctt gcaagatcgt
     4441 caagtcgatt tagtagaaac aattgatagt acactcgcaa ttgaagataa actgcttgat
     4501 acgctgactt tcttagatga agttgtcatt atccgtggtg aaaatggcag cccgcaacca
     4561 attatcgcag ttcatgatga taaagaaatg aattgggatg catggtggga cgcagtttct
     4621 gacctaccac atatgaatga gccaattgtc atgaaatatg atgaaatccc tcgtactgca
     4681 acaatgaaag tacaacgttt gcagatggaa cgagaattga aaaaataagt ttcaaaaaag
     4741 cagctgcgtt atgcagctgc tttttccttt attttcttct aagtgtaagt aatgctaaac
     4801 tcgtaagaaa tgttccaata aagattggaa aaagcacatg gtcatctcct gttgctggta
     4861 gtacgatgtg gtttatagta tctatatcac tcgtattagg agctccctct gtactatttt
     4921 cagagttacc tccaccttca tcggttcctc caccgtcccc accagaagat gcatctttac
     4981 taaactgggc atacaaggtt atatcatttg ctggcatttg attgtttgtg aagtcccatt
     5041 ttgttccacc agttttggca tcataccaac ctttaaatgt ataaccatcc ttagttggcg
     5101 ctggtggctc ttccagtaaa ccttgatact ctaccgcttg agtagaaatg acgccatcta
     5161 catcaaaagt tgcggtataa ctattaatac taaactgggc atacaacgtt atatcatttg
     5221 ctggcatcgt atcggctgta aagtcccatt ttgttccacc tgtttcagca tcataccatc
     5281 cgttaaatgt ataaccctct ttgactgggg ttggtggttc ttgtaaaagt gtccctgttt
     5341 cgacattttc cgttgtttct tgcccgtcaa tattgaaagt tgctttaaaa tattgtacta
     5401 atggttgttc tacagtccca ctgaaatttc cagttgcatt accaatcgta tcacgttcaa
     5461 taaaggtgta gctgacttta ggaatataac taggtaaatt ccatgtaaca gcttcattcg
     5521 catacacacc gttatcgcta attgtatcgg gatcaatcgt ttgttccgca atgtttttta
     5581 ttaaattagg aatcgttaca gtgctttcga aacttatcgg ttcgtttacg attaattgat
     5641 tagtcatttg aataattgtt agcttcgtta aactgtttaa aggtctaatg ttactaattt
     5701 tattttggct tatatcgagc caatctagat ttattaaact cgaaagacca gttacatcac
     5761 taatttgatt gtttgatacg tataatgttt gtaccttagt taagccagcg agtggagtag
     5821 tatccacaat ttggttcgct gataaatcaa gcaagaaaag gttatttaaa ttacttagcc
     5881 cctgaagatt gttaatttgg ttttcatttg catatagaac gcttaaattg cttagcgctt
     5941 gtagctcatc taggttcgta agcttattat tactaacatt taaggagcgg agttgatgta
     6001 aactatttac tccactaagg ttctccaatt gattattata taagcctaaa ccctttagat
     6061 ttgttaaacc gctcagtggc gtgatgtcag taacttgcgc gtcgttaata tctagagctt
     6121 gtaagttttt caagttacta agtgcgctaa tgtcgctaat cggatttcca ctcagctgaa
     6181 gcatggtcaa gttagttaag cctttaagtg gcgaaatatc gcttacttga ttaccagtta
     6241 aaattaaagt tcctaaattg gtcaagtagt tcataccttc tagggagctg atacctttag
     6301 aagtaagggt taatgaatta atagtatcta aatctgtttg agtgacaacc tctgctgtac
     6361 tagactttcc gagtgtagtt tgaatttctg tcgctaaagc atcatcggga aaaatctggc
     6421 tgattgcagc tggtggtgca gcggctgcat gtgcgtctat ttttataaat acattcgtcc
     6481 caataacaat cgacaacgcc aaaacaacgt acaaaaacag tctccctttg gatttcatct
     6541 tgctccccct gacaaaaagt ttaatagtat cttgttccca ttttcttatc accagaaaca
     6601 taaaaaaaca gcttgagggc gtccccgagc tgttttcatt tcatttggta aatcattccg
     6661 attgaagctg gtgcggactc tcgaaaacca aattgtttgt ataaaccatc tgctggtaca
     6721 tcggcaagta atgtaacaca agcagtttta tctaaattcg aatctatata gtttttaata
     6781 tgggtcataa ttagttttcc ataaccatta ccttgaaatt ccggaagcac tgctatatca
     6841 gaaacgatga acataattcc atcaccaacg agccgcccca tgccaataag tgcattgtcc
     6901 tccttcgaac gtagccccac aaaatacaca ctcttcaaca gagcctgacg tgaaacttca
     6961 atagatcgga aactaagacc agcatctact cgaagtttaa caaattcctc cgcatttggt
     7021 aaatcagttg taataatata atccattttc aatctcctat caaaaaaatc tctttgaacc
     7081 aattgtcgcc caaagagttt caatttctat tttattccgc aattttgaca ggaagtcctg
     7141 catcttggaa ttttttatat aatgctttat ttattttgtt atctgtaatt agtaaatcga
     7201 tgttttctgc tgctgtaatg ctcgcggtgg agattacgcc catttttgta tgatctaaaa
     7261 gtgcgatcaa tttgttagta cgtttagcaa gaagtcgttt tagttcagtt tcataaatgt
     7321 tgaaatcagt taagccttct tccattgtaa aaccttttgc tgacataaaa cataaatcgg
     7381 catggatgtt ttcaattaaa ttcgcgccaa gaatcccttc cagtgtaaaa gagttcgtcg
     7441 tcacaatccc gccagttaaa ataacgctga tattcgggtt gtcttttagt tcgattgctg
     7501 tgtagagtcc acttgtaatg acagtcagcc ttgaaaaacc atgtaactct tttgcaagcg
     7561 ccagtgcagt cgagctggca tcaagaataa tcgtttgatt gttttttact aaagtcgccg
     7621 cttctttcgc aatcgcttct ttttcttcga tgttgcgaat aatccggtca ttaaaattag
     7681 taaatttctc ttcactcttt aaaagtaccg cacccccgtg tactttttta atcatcccgc
     7741 tttcttctaa tgaagataaa tcatttcgga tggtactaat cgagacatcc aagatacgac
     7801 ttaattctgg tacagttatt ttgctatttt ggtctagtag atgaattatt ttgttttgtc
     7861 tttcaaatgg aaacatccgc tcgccctcct tttacctatc aatgatttct ttatgtatat
     7921 acatattacc caaaaaaata acaaaacaca aatatatttt ataaaacaca
//
LOCUS       DABQVC010000129         7946 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.129,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000129 DABQVC010000000
VERSION     DABQVC010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7946
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.129"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            210..1613
                     /locus_tag="IBJ56_002033"
     CDS             210..1613
                     /locus_tag="IBJ56_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fucose isomerase"
                     /protein_id="HAM3418283.1"
                     /translation="MEAVKIGFAPTRRSIFSAPDAVKYANLTRDKLNELNIEFVDIAE
                     FNEDGLLYDDADVMKIAAKFKKAGIQGLFLPHTNFGTEYVCARLAKELDVPVLLWGPR
                     DERPDENGVRLRDTQCGLFATGKILRRFQVPFTYMTNCRLSDPEFERGIRDFIAVCNT
                     VKTFQNMRILQIGPRPFDFWTTMCNEGELLEKFNIQLAPIPLPELIKEIRSVSSEQIE
                     EVDGTVEYCHGCAIVKIKEVDLRMVAALKVAMKNLATKYGCSAIAIQCWTALQDEIGI
                     MPCAANAMLIDEGIPVVCETDIHGAISCLLIEAANLGRNKSFFADWTVRHPDNENGEL
                     LQHCGLFPFSVAKDKPAIGYPLAFDSPGAVEAEAKGGELTLCRFDGDNGEYSLLLGKA
                     RGIEGPYTKGTYLWIEVDNLKRLEEKIVSGPYIHHVSGIHADVVPILYEACKYIGIKP
                     DLYDPIEEDIKAYLRGE"
     gene            1629..2453
                     /locus_tag="IBJ56_002034"
     CDS             1629..2453
                     /locus_tag="IBJ56_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAM3418284.1"
                     /translation="MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALYYGV
                     LNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRLIGHPNN
                     KVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAAN
                     YKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEVDGNDPDKLQAIFKT
                     VNVTGKPRLIIAKTIKGYGVKMAENAAKWHHYVPSSEEYEIAMKDLEERMEACRHE"
     gene            2446..3393
                     /locus_tag="IBJ56_002035"
     CDS             2446..3393
                     /locus_tag="IBJ56_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HAM3418285.1"
                     /translation="MNKIANRQVMCEVLMKEATRNDSNLVVLTSDSRGSASLGAFAEK
                     FPERLVETGIAEQNIVGIAAGLAHSGKRAFVASPACFLSMRSIEQVKVDVAYSDTNVK
                     LIGISGGVSYGALGMSHHSLQDIAVTRAIPNLEVILPADRLETEAVFDYLLQSNRPAY
                     VRLGRNAVEDCYAEKPVFQIGKAGTLRKGNDVSILATGEMVRVALDAREELKLKGISA
                     RVLNFSTIKPFDQGAVEAALAETKLLISIEEHSIYGGLGAAVSEVVSSSPTSIRHLIL
                     GIPDEPAIAGTSQEIFDYYGLSATGIVATVMKNLGDERR"
     gene            3390..4853
                     /locus_tag="IBJ56_002036"
     CDS             3390..4853
                     /locus_tag="IBJ56_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase"
                     /protein_id="HAM3418286.1"
                     /translation="MKKHYQIAIDQSTSGTKVLLFKAGELVDRLDKKHRQLYPKKGWV
                     EHNPIEICQNVRTLIADILAKHDLIPADIERLALTNQRETIVAWDKQTGKPLYNAIVW
                     QCNRTKELCETLKKAGYEKRIKQLTGLKIDSYFSASKMKWLLENSSAVRDAASRNQLA
                     FGTMDAWLLFSLTDDSNYFTDRTNASRTLLYDIEKNDWSDELLELFGVKRAYLPEVKQ
                     SAGSFGSYQEIPIHSVMADSEAALYGQGCDAFGAVKATLGTGCSVMMQIGENRLPEND
                     AILTTLAWDVAGVNQFALEGIIRSCGDTLVFLSEQLELFNDYDTACKRAFQLPCNEGV
                     VLIPGQLGLGSPYWNTDIRAEILGLTREHTKWHIIRAGFTSIAFQIKAVIDQMELMTG
                     QNIKRLQVDGGLTKQHELMQYLADVLKAEVAVSPAEELSAIGAIEIADNKLQNKRTIA
                     KLYQPNITHTHALEDFQEWEKQVKSSILKLQKVRNFK"
     gene            4850..6706
                     /locus_tag="IBJ56_002037"
     CDS             4850..6706
                     /locus_tag="IBJ56_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS beta-glucoside transporter subunit IIBCA"
                     /protein_id="HAM3418287.1"
                     /translation="MNNSDLAKEVVKLVGGKENILSVIHCVTRLRFKLRDENLAETEK
                     IKALKGVMTVVKSGGQYQVVIGDHVSYVYDEVIRVLGIKPDDAPQDNPEQEHKSIFNK
                     FVELISGIFMPVLGLLAASGILKGFLTAAVTMGLINTSAGVYEVLYAASDALFYFMPI
                     ILGFSAGKVFKTNQYLSAAVGAALVYPTLVDMYSSGAHLTFLHIPVILMNYTMSVIPV
                     ILAIYFMSKLEKVLVKFIPKSLQLIFVPLLLLLIVVPVSLIIIGPVSTYASQLLAKGA
                     LGLYSLSPMIAGFFLAGIWQVAVMFGLHWAFIPIFINNISVLGYDPINAMLYCTVFAQ
                     TGAVLAVMLKTRNQELRSLSITATISGFLGITEPAIYGVNLPYKKPFIMACVGSAFGG
                     AIAGMSAAKMFGGFASGGIFGIPMFINPDGIGWDFWGFLISLVVAFSVALILTYFFGF
                     KDKVEEVVIQTGEKATLDETIYSPLQGEIIALNDVKDEVFSAGIMGAGVAILPASGEI
                     RAPFDGTVLSVFQTKHAIGLISKQGVELLIHVGLDTVNLNGQFFDIEVSESEEIKKGD
                     LLGRFELDAIKKAGYDITTPIIVTNSATLADVITVNLGKSVDNNQKILEAKA"
     gene            6726..>7946
                     /locus_tag="IBJ56_002038"
     CDS             6726..>7946
                     /locus_tag="IBJ56_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4038 domain-containing protein"
                     /protein_id="HAM3418288.1"
                     /translation="MLKQSADKRRIEKNDKPFFYLADTVWSAFTNIDLTDWAYYLKVR
                     KEQGFNVLQINILPQWDRSILKKMQEPFGISEGFFDLKAKNEAYFKHAEKMLEMAVNQ
                     GFTPALVLLWCNYIPETWGAKFGTSPLFRKEDIKPYTEMMLEHFEQFEPIYIISGDTD
                     FPTETVTAYYLEALETVSKKAPHALKVLHICGRLKDIPENLQTHPALDLYFYQSGHNS
                     EHQSMAYTLAEHFSQLEPIKPVINSEPCYELMGYSRQKYGRFSREDVRKAAWQSVLSG
                     AIAGISYGAHGIWSWHEEGSTFGSALGEGFVSPFNWRQALHFEGATDYAFLKSFILAN
                     DLTTLAPINLVLNQTPEIRAAETEKVVIIYVPSNVPIYLKGQFASLDDYAIDLEQGKK
                     VSLTKILHEEKTEIQ"
BASE COUNT         2563 a         1217 c         1793 g         2373 t
ORIGIN      
        1 taaatcaaaa caaaaaatag cataccttca gtcttctaaa cctctcgttt agttctttta
       61 tataaaataa actaaaacaa tatataaaat aatctttaat tttattgact tagtttagaa
      121 atgatactat aatgcaaata aagaaagcga ttactgattg ctttttatga gaactaaaat
      181 aattactaaa ctaaaaaggt ggttagaagg tggaggcggt taaaattggg tttgcgccga
      241 caaggcgaag tatatttagt gcaccagatg cagtcaaata tgcgaatctc acacgagata
      301 aactaaacga actaaatatt gaatttgtgg acattgcaga atttaatgaa gatggattgc
      361 tttatgatga tgcagatgtg atgaaaattg cagcaaaatt taaaaaggct ggaatccaag
      421 gtttgttttt accacatact aattttggaa cggaatatgt ttgtgcgaga cttgctaaag
      481 agttagatgt accagtattg ctttggggtc cgcgtgacga acgacctgat gaaaatggtg
      541 tgagacttcg agatacgcag tgcggtttgt ttgcaactgg aaaaatctta cgtcggtttc
      601 aagtaccatt tacttatatg acaaattgcc gtctatctga tccagagttt gaacgaggaa
      661 ttcgagattt cattgcagtt tgtaatacgg taaaaacatt tcaaaacatg cggattttac
      721 aaattggacc acggccattt gatttttgga caacgatgtg taatgaagga gagttgctag
      781 aaaaattcaa tattcaatta gctccaattc cgcttccaga attaataaaa gaaattcgta
      841 gcgtatctag cgaacaaata gaggaagtgg atggaaccgt cgaatattgt cacggttgtg
      901 caatcgttaa aattaaagaa gttgacttac gaatggttgc tgctcttaaa gttgcgatga
      961 aaaatttagc aacaaaatat ggttgtagtg cgattgccat ccaatgttgg actgcacttc
     1021 aagatgaaat tggtattatg ccttgcgctg caaacgcgat gctcatagat gaaggaattc
     1081 cagttgtttg tgaaacagat attcatggag caatttcttg tttattaatc gaagcggcaa
     1141 atttgggcag aaataaaagt ttttttgcag attggactgt tagacatcca gataatgaga
     1201 atggtgaatt gctacaacat tgtggactgt ttccgttttc tgttgcaaaa gataaaccgg
     1261 caattggcta tccgttagca tttgattcac ctggtgcagt cgaagcggaa gcgaaaggtg
     1321 gcgaattaac cttatgtcgt tttgatggtg ataatggcga atattccttg ttactgggta
     1381 aagcgagagg tattgaaggt ccgtatacaa aaggaacata tctttggatt gaggtagata
     1441 atttgaaacg attagaggaa aaaatcgttt caggaccata tattcatcat gttagtggta
     1501 tccatgcaga tgtggtccct attctttatg aagcatgcaa atacattggc ataaagccag
     1561 acctctatga tccaattgaa gaagatataa aagcttattt acgcggtgaa tagagaaagg
     1621 agtaaaaaat gagtgaatta aagttaaaat cgtttgaaat tagaaaagat gttctaaaaa
     1681 tgatatatga tgcaaaaacg ggacatactg gttcagattt atcatgtgcg gatattcttg
     1741 tggcgcttta ctatggtgtg ctgaatgtta atccggaaaa tccagaagct ttagatcgtg
     1801 atcgttacgt tcaaagtaaa ggacatgctg tcgaagttct ttgggcagtt ttagcagata
     1861 aagggttttt tgcaaaagaa gaattggctg atttctccgc atttggctcg cgtttaatcg
     1921 ggcatccaaa taataaagta gctggaattg aaatgaacac aggttcgctc ggccatggtt
     1981 tatctgtttc ggtgggtatg gcattagctg ctaaaatgga tgggaaaagt tatcacacct
     2041 atacactcat gggggacggg gaacttgcag aggggtctgt ctgggaaggc gcaatggctg
     2101 cagcaaatta taaattagat aatttgactg cgattattga tcggaattcc ttacaaatct
     2161 ccggtcgaac agaagatgta atgagtgtag aacctttggc agataagtgg cgcgcatttg
     2221 gttgggatgt tatcgaagtg gatggaaatg atccggataa gctacaagcg atttttaaaa
     2281 cagttaatgt gactggaaaa cctcgtctaa ttattgcaaa aacgataaaa ggttatgggg
     2341 ttaaaatggc tgaaaatgct gctaaatggc atcattacgt accaagcagt gaggaatacg
     2401 aaatagctat gaaagattta gaggaaagaa tggaggcgtg ccgtcatgaa taaaatagcg
     2461 aaccgccaag taatgtgtga agttttaatg aaagaagcaa ctcgtaacga tagtaattta
     2521 gttgttttaa caagtgattc aagaggatcc gcttcgctgg gggcttttgc tgagaaattt
     2581 ccagagcgac tagttgaaac tgggattgcc gaacaaaata ttgttggaat tgcagcaggc
     2641 ttagcacata gtggcaagcg agcttttgtc gcttcaccag catgttttct aagtatgcgc
     2701 agtattgaac aggtaaaagt agacgtggct tactcagaca cgaatgtaaa attgattggt
     2761 atcagcggtg gtgttagtta tggtgcactt ggtatgagcc atcattcgct tcaagatatt
     2821 gctgttacta gagcgattcc taatttagaa gtcattctac cagctgatcg tctggaaacg
     2881 gaagctgttt ttgactattt gcttcaatca aatcggccgg cgtacgttcg tcttggcaga
     2941 aatgcggtag aagattgtta cgcagaaaaa ccagtatttc aaattgggaa agctggaacc
     3001 cttaggaaag gaaacgatgt gtcaatttta gcaactggtg aaatggtacg agtcgcactt
     3061 gatgcaaggg aagaattgaa gttgaaagga atcagcgcgc gtgtattgaa tttttcaaca
     3121 atcaaaccat ttgaccaggg agctgtagaa gcggcattag ctgaaacaaa actacttatt
     3181 agcatagaag aacatagtat ttatggtggc ttaggtgcag cagtgagtga agtggtaagt
     3241 agttcgccaa caagtattcg tcatttgatc ttaggaattc cagatgaacc tgctatcgct
     3301 ggaacgagcc aagaaatctt tgattattat ggcttatctg ctactggtat tgttgctaca
     3361 gttatgaaaa accttggaga cgaaagaaga tgaagaaaca ctatcaaatc gctattgatc
     3421 aaagcacatc tggaacgaaa gtattattgt ttaaagcagg tgaacttgta gatcgtttag
     3481 ataaaaagca tcgacagttg tatccgaaga aaggctgggt agagcataat ccaatcgaaa
     3541 tttgtcaaaa tgtccgtaca ttaattgcgg acatattggc aaaacatgat ttaattccag
     3601 cggatatcga gcgacttgct ttgacgaatc aacgggaaac aattgtagct tgggataaac
     3661 aaacgggcaa gccactttat aatgcgattg tatggcaatg taatcgaaca aaagaacttt
     3721 gcgaaacatt aaaaaaagct ggttatgaaa aaagaattaa acagcttacc ggattgaaaa
     3781 ttgattctta tttttctgct tctaaaatga agtggttatt ggaaaatagt tctgcggtgc
     3841 gggatgcagc aagtcgtaat caattggcat ttggcacaat ggatgcttgg ttgttatttt
     3901 cgcttacgga tgatagtaat tatttcacag accgaacaaa cgccagccgc acactccttt
     3961 atgatattga aaaaaatgat tggtcagatg agttactcga actttttgga gttaaacgtg
     4021 cttatttacc agaagtgaag caatctgctg gaagttttgg aagttatcag gagataccga
     4081 ttcatagtgt gatggctgat tcagaagcgg cactttatgg acaaggctgt gatgcatttg
     4141 gggcagtgaa ggcgacgctt gggacaggat gctctgttat gatgcaaatt ggtgagaaca
     4201 gattacctga aaacgatgct attttgacaa ctcttgcctg ggatgttgca ggcgtgaacc
     4261 agtttgcgtt agaaggaatt attcgttctt gtggagacac attggttttt ttatccgaac
     4321 aattagaact gtttaatgat tacgatacag cttgtaagcg agcatttcaa ttaccatgca
     4381 atgagggtgt tgtgctaatt cctggacaat taggtttagg ttcgccttat tggaatacag
     4441 atatacgagc agagattctt ggtctcacac gagaacatac aaaatggcat attattcgtg
     4501 ccggttttac aagtattgca tttcaaatta aggctgttat tgaccaaatg gagttaatga
     4561 caggtcaaaa tattaagcgc ttacaagtag acgggggatt aacaaagcaa catgagttga
     4621 tgcaatattt agcagatgtt ttaaaagcag aagtggcagt cagtcccgcg gaagaacttt
     4681 cggcaattgg tgctattgaa attgccgaca ataaactaca aaataagaga acgatagcaa
     4741 aattgtacca accaaatatc actcatacac atgctttgga agattttcaa gaatgggaaa
     4801 aacaagtgaa aagcagtatt ctaaaattac agaaggtgag gaattttaaa tgaataattc
     4861 ggatcttgca aaagaggttg taaagcttgt tggtggaaaa gaaaacattt taagtgtgat
     4921 tcactgtgtg acacgactac ggtttaagtt acgtgatgaa aatctagcag aaacagaaaa
     4981 aatcaaagca ttaaaaggtg ttatgacggt tgtgaaaagt ggtggacaat accaagtggt
     5041 tatcggtgat catgtgagtt atgtttatga tgaggtcatt cgagtattag ggattaaacc
     5101 agatgatgcg ccgcaagata accctgaaca agaacacaaa agtattttta ataagtttgt
     5161 tgaattaatt tctggaatat ttatgccagt actgggtcta ttggcagctt caggtatttt
     5221 gaaaggattc ctgacagcgg cagttacaat gggactaatt aatacctcag ctggtgttta
     5281 cgaagttctt tacgcagcaa gtgatgccct cttttacttt atgccaatta tacttgggtt
     5341 ttcagcaggg aaagtattta aaacgaatca atatctttct gctgcggttg gtgcagcact
     5401 tgtttacccg acgcttgttg atatgtatag cagcggagct catttaacat ttctacatat
     5461 ccctgtaatt ttaatgaatt atacaatgtc tgttattcct gttattttag ctatttactt
     5521 tatgagcaaa ctggaaaaag tattagtgaa atttattccg aaaagtttac aattgatttt
     5581 tgttcctctc ttattacttt taattgtggt gcctgtatct ctaattatta tcggacctgt
     5641 ttcaacatat gctagccaac tacttgcaaa aggagcattg ggactttatt cgcttagtcc
     5701 aatgattgca ggattcttcc tggctggtat ttggcaagtg gctgtcatgt tcggattaca
     5761 ctgggcattt atcccgattt tcattaataa tatttctgtt ttagggtacg atccaattaa
     5821 tgctatgctt tattgtactg tattcgcgca aactggtgcg gttctggcag taatgcttaa
     5881 aacccgaaac caagaattac gttccctttc tataacagca actatttcag gatttttagg
     5941 aatcacggaa ccagcgattt atggagtaaa cttgccatat aaaaaaccat ttattatggc
     6001 ttgcgtagga tcagcatttg gtggggcaat tgcagggatg agtgctgcga aaatgtttgg
     6061 aggcttcgcg tctggtggga ttttcggtat tccgatgttc attaatccag atggaatagg
     6121 atgggatttt tggggattct taatttcttt agtagtggca ttcagtgtag cgttgatttt
     6181 aacttatttc tttggattta aagataaagt tgaggaagtt gtgattcaaa caggagaaaa
     6241 agctacatta gacgaaacta tttatagccc acttcaaggg gaaataattg cattaaatga
     6301 tgtgaaagat gaagttttct ctgctggtat aatgggagca ggagtagcga ttcttccagc
     6361 gagtggcgaa attcgtgctc catttgatgg aacagtactt agtgtttttc aaaccaagca
     6421 tgcgataggg ttgatttcca aacaaggagt cgagttgtta attcatgttg gacttgatac
     6481 agttaatcta aatggtcaat tttttgacat tgaagtgagc gaatcagaag aaataaaaaa
     6541 gggcgattta ttaggaagat ttgaattaga tgcaattaaa aaagctggct atgatattac
     6601 aacgcctatt attgtaacta atagtgccac actcgccgat gttattacag tgaaccttgg
     6661 aaaaagcgta gataataacc aaaagatttt agaagcaaag gcttaatata gaaagggtga
     6721 aaaaaatgtt aaaacaaagt gcagataagc gccggataga gaaaaatgac aaaccttttt
     6781 tctaccttgc agatactgtt tggagtgcgt ttacaaatat tgatttaaca gattgggcct
     6841 actatttaaa agtccgaaaa gagcagggat ttaatgtact gcaaatcaat attttgccac
     6901 aatgggatcg aagtatacta aaaaaaatgc aagagccgtt tggtataagt gaaggttttt
     6961 tcgatttaaa agctaaaaat gaagcttact ttaaacatgc agaaaagatg ttagaaatgg
     7021 cagtgaatca aggttttact ccagcgcttg tgttattgtg gtgtaattat attccagaga
     7081 cgtggggggc aaaatttggt acttcaccac tgtttcgaaa agaagacatt aaaccctata
     7141 cagaaatgat gttggaacat ttcgagcaat tcgaaccaat ttatatcatt agtggggaca
     7201 cggattttcc aacggaaact gtaacagctt attatttgga agctttagaa accgtttcta
     7261 aaaaagcgcc acacgcactt aaagttttgc atatttgcgg tcgtttaaaa gatattccgg
     7321 aaaatctgca aacacatcca gcacttgatt tgtattttta tcaatctgga cataattcgg
     7381 agcaccaatc aatggcgtat acgttggcag aacactttag tcagttagag ccaatcaagc
     7441 cagttattaa ttcagaaccg tgttacgaat taatgggata tagtcgacaa aaatatggtc
     7501 gttttagccg agaagatgta cgaaaagcag cttggcaaag tgtcttatct ggtgctatag
     7561 ctggtatttc ttatggggca catggtattt ggagttggca tgaagaagga agtacatttg
     7621 gatcagctct aggcgaaggt tttgtttctc catttaattg gcgacaagca cttcattttg
     7681 aaggagctac agattatgca tttctaaaat cctttatttt ggcaaatgac ttaacaacac
     7741 tggcaccaat aaatttagtt ttaaatcaaa ctccagaaat tcgagcagcg gagaccgaaa
     7801 aagtagttat catttatgtg ccatcaaatg tcccgattta tttgaaaggg caatttgctt
     7861 ctttggatga ctacgcgatt gatttggagc aaggtaaaaa ggtcagcctt acaaaaatac
     7921 ttcatgaaga aaaaacagaa attcag
//
LOCUS       DABQVC010000130         7923 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.130,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000130 DABQVC010000000
VERSION     DABQVC010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7923
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.130"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            28..873
                     /locus_tag="IBJ56_002039"
     CDS             28..873
                     /locus_tag="IBJ56_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HAM3418289.1"
                     /translation="MNLLKKWFSSIDWDQFWNHIISVGIKIAILIALYFIFRVVGNKI
                     IRSFFRKYRQQQAVSVGRADTLESLISNFYGYVLFFTFAILLLQNFMDVTAIIASAGV
                     ASLAIAFGAQGLVSDVVTGFFILLERQLDVGDTITIGLVNGTVEALGLRTTQVRDFDG
                     TLHFIPNRQIMVVSNHSRGNMRVMVDIQISPHEDPEKAIKIIGEVCDVAAKENKNIVE
                     PPVVLGVQNIDATNMIIRVVGKAVNGEQYSVQRDLLKDIREALAENEIELPLNFVSTF
                     GPNNN"
     gene            complement(917..2032)
                     /locus_tag="IBJ56_002040"
     CDS             complement(917..2032)
                     /locus_tag="IBJ56_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyldiaminopimelate deacetylase"
                     /protein_id="HAM3418290.1"
                     /translation="MLNEFIAIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVK
                     KWRTGILVLVKGTNPEKTIGYRTDIDALPITEETGLPFASKHPGNMHACGHDLHMSIA
                     LGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKV
                     GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDP
                     MDSAVITIGRIHGGEIQNVIAETAYLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQC
                     EVEFHPGSDYYQVDNDPVETEAFIHFLEEQYPESYVPARSAMTGEDFGYFLSEIKGFM
                     FWLGVDSEYSLHHAKLSPKEEAIPFAIDVLIHFLESK"
     gene            complement(2096..2806)
                     /gene="dapD"
                     /locus_tag="IBJ56_002041"
     CDS             complement(2096..2806)
                     /gene="dapD"
                     /locus_tag="IBJ56_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HAM3418291.1"
                     /translation="MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFIT
                     GNAGTIFGEWAVVEPFLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRD
                     QVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEP
                     PSAQPVVVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVTKDVAPGTVVAGIPARELKK
                     LDAKTASKTEIMQELRQL"
     gene            complement(2854..3732)
                     /locus_tag="IBJ56_002042"
     CDS             complement(2854..3732)
                     /locus_tag="IBJ56_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3418292.1"
                     /translation="MIVTEYELLVCLAEELNMRKSAEKLFLSQPALSQRLQTIESRWN
                     TKIFIRTQKGLLLTPEGEAIVRHASSVIEREHTIQEKLEAMEGVVRGTLRIACASVVA
                     QMWLPRVLKAFSRTYPNVQISLVTGWSSEVTQQLAAGNVHIGIVRGSSTWKSVQKPLF
                     NDKLILVDTEITKIEEVFQTNRPFIQFRSDSNYYQVIQDYWQRNFGKMPRQAMLMDQM
                     ETSRQMALNGIGFAILPEVTMIGYTDKINKIPLTEKDGSILSRETNLLTYEQSLSLPQ
                     VKAFLEITDKFLEQVK"
     gene            complement(3729..4181)
                     /locus_tag="IBJ56_002043"
     CDS             complement(3729..4181)
                     /locus_tag="IBJ56_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HAM3418293.1"
                     /translation="MISNRFGQFIDNELADSMISAEKVAHVQLGNNLEHALLVLTKCG
                     YSVIPVLDFEFKLHGLISAAMITDAILGLERIEFERLEDLKVEDVMQTDFPVIKDFNN
                     NERIVHLLVDHPFVCVVDADHHFEGIVTRRVVLKQVNRYIHLQVEENR"
     gene            complement(4383..4616)
                     /locus_tag="IBJ56_002044"
     CDS             complement(4383..4616)
                     /locus_tag="IBJ56_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkuJ family protein"
                     /protein_id="HAM3418294.1"
                     /translation="MSQLLGIIQRLHAMQEDESAETQARRFEKNGTPVCEVKFFQASN
                     SFEVEIYGDNSKYQFDDIDMTAIEIFETLQENE"
     gene            complement(4921..5142)
                     /locus_tag="IBJ56_002045"
     CDS             complement(4921..5142)
                     /locus_tag="IBJ56_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418295.1"
                     /translation="MTKPGKYEALFFPTKDGLLKIHAYGFNPCGSWGEVFATIGDQTI
                     CVKGFNRHKTIVRATKMIISATANQKNEF"
     gene            5362..6507
                     /locus_tag="IBJ56_002046"
     CDS             5362..6507
                     /locus_tag="IBJ56_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAM3418296.1"
                     /translation="MTKSIRPELRDIQVSGIRTFNTRVTGIPDMIRLTLGEPDFPTPE
                     HVKQAAISAIEENFTNYTPNAGMPELLEAASTYFHEKYDLSYNNKEIIVTVGATEAIS
                     VALQTILEPGDEVILPDPIYPGYEPLITLNRAHPVKVDTTETNFKLTPEQLRAHITPK
                     TKALIIPYPSNPTGVTLSKKELFALAEVLNETGIFVIADEIYSELTYHEEHVSIAPLL
                     REQTIVINGLSKSHAMIGWRIGFLLAPEALTQEMLKIHQYSVTCASSISQKAALEALT
                     NGKDDAFQMRTEYKTRANFTQDRLEKMGFTVIPPDGAFYFFVKLPDEITENAFDWAVK
                     LAEEAKVAVVPGNAFSEKGDRYFRLSYATSFNNLAEALDRMAQFIAK"
     gene            complement(6544..7404)
                     /locus_tag="IBJ56_002047"
     CDS             complement(6544..7404)
                     /locus_tag="IBJ56_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HAM3418297.1"
                     /translation="MEKIGFVGTGVMGSSMAGHLLEAGYEVLVYTRTKTKAEDLLEKG
                     ALWIKTPGELANKVDILISMVGYPKDVEELYLGENGFLENLAVGTVAIDMTTSSPALA
                     KKMAEFGREKGIGVLDAPVSGGDIGAKNGTLAIMVGGSEDVFLKVKPIFDILGSSVIL
                     QGDAGAGQHTKMVNQIAIASNMIGVTEAIIYAEAAGLNPSSVLDSISGGAAGSWSLAN
                     LIPRVLKDDFSPGFFIKHFIKDMGIAISEAKQMGLELPGLTLAEKMYQTLAEQGLSEE
                     GTQALIKYYR"
     gene            complement(7417..>7923)
                     /locus_tag="IBJ56_002048"
     CDS             complement(7417..>7923)
                     /locus_tag="IBJ56_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HAM3418298.1"
                     /translation="DRVPPLLASRLNRAIKFYDKQYAKKGKRATFIVSGGQGANETIS
                     EAEAMRGYLLEKGIDENFIIMEDQSVNTLQNMKFSKAKMDAIMSNYNSLFSTNNFHLF
                     RAGIYARKAGLKSQGIGAKTALYYMPNALIREFIAITVMYKKVHMVLLGLLLLFFAFL
                     AIIGVTFR"
BASE COUNT         2357 a         1689 c         1331 g         2546 t
ORIGIN      
        1 gaactttcaa aggatgtgga ccagaagatg aatttactca aaaagtggtt cagttctatt
       61 gactgggacc aattttggaa tcatattatt tcagtaggaa taaaaattgc cattttaatt
      121 gctctttatt ttattttccg cgtggttggg aataaaatta tccgtagttt cttccgcaaa
      181 tatcggcaac aacaagcagt ttctgttggg cgcgcggaca cgttagaaag cttgatttct
      241 aatttttacg gctatgtttt attcttcact tttgcgattt tattattaca gaactttatg
      301 gatgttacag cgattattgc aagtgctggg gtggcgagtt tggctattgc ctttggtgcg
      361 caaggacttg ttagtgacgt tgtgactgga ttttttattt tacttgaacg tcaacttgat
      421 gttggtgata cgattaccat tggactagtt aatggaacag tagaagcact tggacttaga
      481 acaacacagg tacgtgattt tgatggcacg cttcatttca ttcctaacag gcaaattatg
      541 gtcgttagta atcattcgcg cggtaatatg cgtgtgatgg tggacattca aattagtcca
      601 catgaagatc cggaaaaagc aattaaaatt atcggtgagg tttgtgacgt agctgcaaaa
      661 gaaaataaaa atatcgttga gccccctgtt gtattaggtg tgcaaaacat tgacgcaaca
      721 aacatgatta tccgcgtagt cggtaaagca gtgaacggcg agcagtattc tgttcaacgt
      781 gacttactca aagatattcg cgaagcactc gcagaaaacg aaatcgagtt accacttaat
      841 tttgtcagca ccttcggacc aaataataat taaaaagacg ccaattcgct ccttttgaga
      901 acgaattgac gtctttttat ttactttcca aaaagtggat taatacatca attgcaaatg
      961 gaatagcttc ttcttttgga ctaagtttcg catgatgcaa actgtactcg gaatccacgc
     1021 ctaaccaaaa cataaaccct ttaatttcgg ataaaaagta accaaaatct tctccagtca
     1081 tcgccgaacg agctggcaca taactttctg gatattgttc ttccaaaaag tggatgaatg
     1141 cttctgtttc aactggatca ttgtccactt gataataatc cgagccagga tgaaattcaa
     1201 cttcgcattg gtaagcttct tcccagcctt tcgctagctg tttcaaacga gtccaaacaa
     1261 tctccattgt ttcaggggaa agcgttcgaa tggttccatc taaataagca gtttccgcaa
     1321 tgacattttg aatttctccg ccatgaattc ggccaatcgt aataactgca ctatccattg
     1381 gatcaatatt ccgacttata atcgtttgca tttgcccaac aaacgcactt gctgcgacaa
     1441 ccatatcatt cgccaaatga ggatacgccg cgtgtccacc ttttccttta aacgaaataa
     1501 aaagttccga tgtattcgca aaaagtaaac ctggcttaat tgcaatttct ccgactttgt
     1561 attctggtgc gatatgaagc ccataaatgc tatccggtcg ccactcggca aattcagcgc
     1621 tttccatgat gggttttgca ccacctggac cttcttcggc aggctggaaa acgaaaagca
     1681 aattatcttt ggctggttta ctcgcaaaat gcgtcaatac accaagcgcg atactcatat
     1741 gtaaatcgtg cccacaagca tgcatattgc caggatgttt tgatgcaaaa ggcagcccag
     1801 tttcttctgt aattggcaac gcatcaatat cggtacgata accaattgtt ttttctggat
     1861 tagttccttt tactaaaacc aaaatccccg tacgccattt tttcacttct aaatgttcac
     1921 tcggtaattt gctaatatag tctaataaat aggcttgggt tttaagctct ttataacctg
     1981 tttcaggaat ttggtgtaac tctcgtcgaa tggcaataaa ttcatttaac acagcgattc
     2041 tctccttcta aaaaaggact gcttcgccaa cagacgaaac agttcccttt aatttttaaa
     2101 gttgacgaag ttcttgcatg atttctgttt tagaagctgt ttttgcgtct aattttttaa
     2161 gttcacgtgc aggaatccca gccacaactg ttccaggagc tacgtctttt gtaacgattg
     2221 cgccagctgc tacgactgcg ccttctccaa tacgtacacc ttctaaaaca accacattgg
     2281 cgcctacaac aacattatct tctacgacaa ctggttgtgc ggatggtggt tccactacgc
     2341 cagcaagcac agaacctgca ccgatatggc aatttttacc aaccgttgcg cgcccgccta
     2401 gaacaacatt catatcaatc atagtaccgt caccgataac agaaccaata ttaatgcttg
     2461 ctcccatcat aattacagca ttatcaccaa tagttacttg gtcgcgaata actgcgcctg
     2521 gctcaatacg tgcgttaata tttttcatat ctaacaaagg aatagccgag ttacgacgat
     2581 cattttcgat aacataatct tcaatattcg ctttatttgc ttctaaaaat ggctcaacaa
     2641 ctgcccattc tccaaaaata gttcccgcat ttccagtaat gaaagtttta acatcactag
     2701 ggaaatcaat tttttctaag tcccctttaa ggtaaacttt tacaggtgtt gctttcttgc
     2761 tattttgaat aaaagaaata atttgatgtg catccatttg ttccatgaat ttttgtcccc
     2821 ttccgatacg ttctgttttc tattttgcca tagctattta acttgttcaa ggaatttatc
     2881 tgttatttct aaaaacgcct tcacttgtgg taaactgagt gactgttcat aggtcagcaa
     2941 gttggtttcc cggcttaaaa tcgagccatc tttttctgtt aaaggaattt tgttgatttt
     3001 atctgtgtag cctatcatcg tcacttccgg taaaattgca aaaccaatac catttaaggc
     3061 catttgtcta gaggtttcca tctgatccat aagcattgct tggcgtggca tttttccgaa
     3121 atttcgttgc cagtagtctt gaataacttg gtaataattc gaatcactgc gaaattgaat
     3181 aaatggtcga ttagtttgga aaacttcttc aattttggta atttctgtgt ctactaaaat
     3241 taatttgtca ttaaataacg gtttttgaac acttttccat gtggagcttc cacggacaat
     3301 gccgatatgg acatttccag cagcgagttg ttgcgtaact tcactgctcc agccagttac
     3361 aagtgaaatt tgcacattag ggtatgttct tgaaaatgct ttcagaaccc gaggaagcca
     3421 catttgcgcc actacgcttg cacaagcaat tcgtaatgtt ccgcggacaa cgccttccat
     3481 cgcttcgagt ttttcttgaa tagtgtgctc tcgttcaatg acactagacg catgacgaac
     3541 aatagcttct ccttctggtg taagcagtaa gcctttttgt gtacgaataa aaattttggt
     3601 attccatcta ctttcaatcg tttgtaagcg ttgcgataag gccggttgac ttaaaaatag
     3661 tttttccgca cttttacgca tattaagctc ttctgctaaa caaacaagta attcatattc
     3721 tgttacaatc atctattttc ctccacctgc aaatgaatat aacgattgac ttgttttaaa
     3781 acaacacgtc ttgttactat cccttcaaaa tggtggtcag catctacaac acatacaaaa
     3841 ggatgatcca caagtaagtg cacaattcgt tcgttattgt taaaatcttt gattactggg
     3901 aaatccgttt gcatgacatc ctctactttt aagtcttcta atcgttcaaa ttcgatacgt
     3961 tcgagtccaa gaatggcatc cgtaatcatt gctgcactta ttaatccatg gagtttaaat
     4021 tcaaagtcta gtacaggaat aactgaataa ccacatttag ttaaaacaag taatgcatgt
     4081 tctaaattat taccaagctg tacatgagca accttttcag cggaaatcat cgaatcagct
     4141 agttcattat caataaattg tccaaatcta tttgagatca tttagaatct tcctcttcct
     4201 ttattttcaa gctctacgaa gtttctttca actttttaaa ataaatcgaa acttttccat
     4261 ctcctattct accatactat ttggtctaat ttctttcatt tagtgcttga aaacaaaaaa
     4321 agctgtgaat ataaattcac agccccctaa gtaaaccacc ggcttatccg atctttacca
     4381 tgttattcgt tttcttgtag cgtttcaaaa atttcgatag cagtcatatc aatatcatcg
     4441 aattgatatt tactattgtc gccgtagatt tctacttcaa atgagttaga agcttgaaaa
     4501 aactttactt cgcacacggg cgtaccattt ttttcaaaac gtcttgcttg tgtttcagca
     4561 gactcatctt cttgcattgc atgtaaacgt tgaataattc ccaataactg agacatctta
     4621 cactctcctc tcaaatccac catctgacgt gcaaaaattg gcataccttg ctattatacg
     4681 cgcgtggcaa tgctttttta catatttcct catatctggt tttttcgcca tatcttattt
     4741 ctttcactat actaccaaat tttatcgcaa accgcacgta taacgcaagg gttctggaaa
     4801 tattcagaaa aagaaattat tttaaattaa cctaaaagac atgatttgtt ctactttgcc
     4861 gttattttat ccaaaaaaaa gactataaaa agggattaac cttcctacag tctttgataa
     4921 ttaaaattca tttttctgat tagcagtagc actgataatc atttttgtcg ctcgtacgat
     4981 ggttttgtgg cgattgaaac ctttaacgca tattgtttga tcaccaattg ttgcaaatac
     5041 ttcgccccat gaaccacagg gattaaagcc ataagcatgt atttttagca agccatcttt
     5101 tgttggaaaa aagagagctt cgtatttccc tggtttagtc atatccggtg gccccttccg
     5161 cattgaagta atcatttcta actgaaaatg attatcatta ttaaaactat cttatagtat
     5221 tctacataaa agtgcaaggt tttttaggta tattttcaga cattttgctt ttcttccttt
     5281 ttaagctata atggaatgaa atcacgaagc ttactcccac ctgattttca cgggattttc
     5341 ttataaagaa aggtgacgaa aatgacaaaa tctattcgac cagaattacg cgatattcaa
     5401 gtaagtggta tcagaacttt taatacacga gtgacgggta ttcctgatat gatccgttta
     5461 acacttggcg aacctgactt tccaacgcct gagcatgtca aacaagcggc catttcagca
     5521 atagaagaaa atttcaccaa ctatacaccc aatgccggga tgccagaatt actcgaagca
     5581 gcttccactt attttcatga aaaatatgac ttgtcctata ataataaaga aattatcgtt
     5641 acggtcggcg ctacagaggc tatctccgtt gccttgcaaa cgattttgga gcctggggat
     5701 gaagttatct taccagaccc tatttatcca ggttacgagc ctctaattac gttaaataga
     5761 gcgcacccgg ttaaagttga tacgaccgaa actaatttca aattaacacc tgaacaatta
     5821 cgagcacata tcacaccaaa aactaaagca cttatcattc cttatccatc caatccgacc
     5881 ggtgttacac tctctaaaaa agaacttttc gcattagcag aagtactaaa tgaaacaggt
     5941 atttttgtca ttgctgatga gatttacagt gaattaactt atcacgagga gcacgtgagc
     6001 attgcgcctt tactaagaga gcagacaatc gttatcaacg gtttatcaaa atctcacgca
     6061 atgattggtt ggcgaattgg ctttttactt gcaccagaag cccttacaca agaaatgttg
     6121 aaaatccatc aatattcggt tacttgcgca agttccattt cccaaaaagc agcactagaa
     6181 gctcttacta acggcaaaga cgatgctttt caaatgcgaa ctgaatacaa aacacgcgct
     6241 aatttcactc aagatcgact agaaaaaatg ggctttactg tcatcccgcc agatggtgca
     6301 ttttacttct tcgtcaaact tcccgatgaa ataaccgaaa atgctttcga ttgggctgta
     6361 aaacttgctg aagaagccaa ggttgcagtt gttcctggaa atgctttttc cgaaaaaggc
     6421 gatcgttact tccgtctttc ttatgctact tcctttaata atcttgctga agcattagat
     6481 cgaatggctc agtttatagc aaaataaaaa aacatccact aacttaaatt agtggatgtt
     6541 tttttaacga taatatttaa tgagcgcttg cgtcccttct tcactcaaac cttgttcagc
     6601 tagcgtttga tacatttttt cagctaaagt tagcccagga agttctaagc ccatttgttt
     6661 tgcttctgag attgcgattc ccatatcttt tataaaatgc ttaataaaga aacccggaga
     6721 aaaatcatcc ttaagtacac gtggaatcaa gtttgcaagc gaccaactgc ctgctgcacc
     6781 acctgaaatt gaatcgagaa cacttgatgg attaagtcca gccgcctccg cataaatgat
     6841 cgcttcagtc acaccaatca tgttggaagc aattgcaatt tgattcacca ttttggtatg
     6901 ttgtccagca cctgcatcac cttgcagaat cacactgcta ccaagaatgt caaaaattgg
     6961 tttcactttt aaaaatacgt cttcagatcc tcctaccata attgcgagcg tgccattttt
     7021 cgcgcctatg tcgccacctg aaacaggagc atcgagtaca ccgattcctt tttcacggcc
     7081 aaattcagcc atttttttag ctaatgccgg tgaggaagtt gtcatatcga ttgctactgt
     7141 gccaaccgct aaattttcta aaaagccatt ttcgcctaag taaagctctt ccacatcttt
     7201 tggataacca accattgaaa ttaatatatc cactttatta gccaattctc ctggtgtttt
     7261 tatccatagt gctccttttt caagtaaatc ttctgctttt gtttttgtgc gagtatacac
     7321 caatacttca taaccagcct ccagtaaatg ccctgccata ctcgaaccca ttacgcctgt
     7381 accaacaaat ccaattttct ccatcaggct aacctcctat ctaaaagtaa cacctataat
     7441 cgctaaaaac gcaaaaaaca atagtaataa accaagtaag accatatgta cttttttata
     7501 cattacagta atagcaataa attctcgaat taacgcatta ggcatatagt ataaagctgt
     7561 ttttgcacca atcccttgac tcttcaagcc cgcttttctt gcataaatac ctgctctaaa
     7621 taaatgaaaa ttattcgttg aaaataaact attatagttt gacataattg catccatttt
     7681 tgcctttgaa aatttcatat tttgcagtgt attaacggat tgatcttcca taataataaa
     7741 attttcatca atgccttttt ctaataaata acctcgcatc gcttctgctt ctgaaatagt
     7801 ttcattagca ccttgtccac cagatacgat aaaagtagct cgtttgcctt ttttggcgta
     7861 ttgcttgtcg tagaacttaa tagcgcgatt caaccgacta gcaagcaatg gaggcactct
     7921 atc
//
LOCUS       DABQVC010000131         7846 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.131,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000131 DABQVC010000000
VERSION     DABQVC010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7846
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.131"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..558)
                     /locus_tag="IBJ56_002049"
     CDS             complement(<1..558)
                     /locus_tag="IBJ56_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3418299.1"
                     /translation="MSSKNKQSFMNRFIAFMEKYFEPVAARIEKQRHISSIKNGMIAL
                     ISVLIIGSFSLIISAIGNMFPAGSVVKEFFVQNAAALNLPFQFTFGLLSIYAAITISY
                     SHAKQMKVPVLHSVMAAVMVTLILNTKMVDGVLNTEFLDSRGLFIAIFAALISVELIG
                     LFIRKNITIRIKGLPAGIATTFEAII"
     gene            complement(578..913)
                     /locus_tag="IBJ56_002050"
     CDS             complement(578..913)
                     /locus_tag="IBJ56_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3418300.1"
                     /translation="MEINQLHVLLVCNLGASTGVMVTKMKEIAQNSEKLTNTDVKIEA
                     HPAGELREHIEDFDVILVGPQIKHQLKHLSEIAAEYNKPIQVIDTKDYGTVNGANILK
                     DAIILKLNK"
     gene            complement(914..1243)
                     /locus_tag="IBJ56_002051"
     CDS             complement(914..1243)
                     /locus_tag="IBJ56_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HAM3418301.1"
                     /translation="MDIEKISFSLISLAGDSFSKLIEALQAAKESDSELVEQLLKEAD
                     DLMIEAHKVQTEMLIQETRGEQANFSVLLVHAQDTLMNTILASTLIREMIEMHQEIKT
                     LRKEEEK"
     gene            complement(1258..3276)
                     /locus_tag="IBJ56_002052"
     CDS             complement(1258..3276)
                     /locus_tag="IBJ56_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HAM3418302.1"
                     /translation="MKLNQQCIQILDFLMEQEDFKNIGYISNALGCSERSVRYSLEKI
                     DIFLHEQTLPALIRHTRKGVLLPEKNIVNPVVRKFKQQITPKKYRYSQEEVQQFLLLK
                     LLLSEEVLPVTYFEEVLFISRSSVLNHLRAIEGELFLNNLDLSHQPRHGFLVTGNLIT
                     KTSLFARSFLRFINIREFYQFLDSENSLSKKGELFFYNLFELEILQEVNREAHSVEEN
                     MTRAMDEQLYLTLIAILLKQHEAKPDFQFTADFMIKDELDQALATIIGSLKQYQYGRE
                     DEAVIEAFVTGICEKMGEIYQVDFVHGDTDFFTQIKAHIKLMIRRVRAGVTIENPIFN
                     EFMRDNREIFMRVKESLDALKPLLPISVSSQEISFLAIYFASEVQRNKQTVEMKPNLL
                     IICPEGVAVSKMIAIQLKRMFEFESIQTIGLRKFKRAMMADFDFVISTVDLPDMQDAK
                     VLRIHSYLQKEDMELLQKHLRMKLIKSDKQIINKFSKILAIIGENTQITNLSKLEFDL
                     LEALISDEGETPKRLIPPFQFTEEAIVMEETCPTWRQAIKLGTKCLEHLEVIEPSYHE
                     KIIHNLKAYGPYMVVAPGVVIAHAGASDGVLMDGIGVTIIEDGIMFFDRYEEPVHVIF
                     TLALKTKEAHLIVEQLMKLALDEEKMQKIKMASSKRDIYHYVKSAIFE"
     gene            complement(3484..4650)
                     /locus_tag="IBJ56_002053"
     CDS             complement(3484..4650)
                     /locus_tag="IBJ56_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3418303.1"
                     /translation="MDMKKVNPNLTLLALAISAFGIGSTEFISVGLLPLISSSMGVSI
                     STAGLTVSIYALGVMVGAPVLTTMTAKMNRKNLLLLVMLVFLIGNLVSAFAVSFGMLL
                     TGRVVAAFAHGVFMSIASVIAADVVHPSKRASAIAVMFTGLTVATVTGVPLGTFIGQL
                     FGWRMSFLFIVAIGVIAIIANFFLVPKNLSNGKSISFKAIGQLLVNKKIVMVLLMTAF
                     GYGGTFVVYTYLSPMFSGMGYSTSMIVILLIVYGVMVAIGNTIGGHFANERPAKALFV
                     MFSLQGITLLLLQFTSTNAIFGLMTIMLMGFFAFMNVSGLQLYVVQLAERYLPETVSM
                     ASALNISAFNVGIAVGAFIGGLVTEYIGLGYTPIVGFLMVFIAIILTFYMKKDK"
     gene            4778..5131
                     /locus_tag="IBJ56_002054"
     CDS             4778..5131
                     /locus_tag="IBJ56_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3418304.1"
                     /translation="MTKVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPN
                     ITQKMLTQQLRELEKSGVIVRKVYEQIPPKVEYSLSEYGESLSEILNKLCLWGENHVD
                     LLLTKNEDIVLLKRD"
     gene            complement(5164..5475)
                     /locus_tag="IBJ56_002055"
     CDS             complement(5164..5475)
                     /locus_tag="IBJ56_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2316 family protein"
                     /protein_id="HAM3418305.1"
                     /translation="MTLSKEQIKATKSEFAENLALADLTIAEVAKELNTSEVKIERIL
                     NLKQRSLNDGWILRNYLLRKVAEVGKTPVPFTALSGDYHGYWFLDGEEIDSGILSIGN
                     H"
     gene            complement(5492..6490)
                     /locus_tag="IBJ56_002056"
     CDS             complement(5492..6490)
                     /locus_tag="IBJ56_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAM3418306.1"
                     /translation="MKIITIEEHFESEVITNEINKVTGNLVSGQVSPEMFQYMQKELP
                     SAAEMQDTEKRLAFMDQHGIDIQVLSYGNSSPQNLDPKISVALCKRANDELAKVIQQN
                     PTRFAGFAVLPVGSPEDAAIELKRAVEELGFKGALVKGQFENKYFDNRFYYPIFEMAE
                     KLDVPISFHPSFIPETITEQYFASDAWSDVVTGVFSSAGFGWHMDVGIQVVRMILSGI
                     FDKLPNLKIITGHLGEMVPMFLNRMDNTLGHWTTLERKISDYYRTNVYVTPSGLLYQN
                     EWKFLLNELDENHLIYALDYPFVKPENARTFLDTLDLTDEVKAKIAHENAEKLLHL"
     gene            6592..7149
                     /locus_tag="IBJ56_002057"
     CDS             6592..7149
                     /locus_tag="IBJ56_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3418307.1"
                     /translation="MNNYVKVHQPLNVDLRTQKTQTKLYTVLERFYVEGRTFESISIK
                     DLCEQARVSRATFYRHHEEIIQVIEVQILRTMQYFSLEFDQIILTKENIQRLILRTIQ
                     KNPLLFQAIFWSRAENIFVDVVSGEILRISLLKEVSFSDSHFIPNYFARMILSLATEI
                     QQSNKDYTNGQLVELIQEAARFLQK"
     gene            complement(7181..7669)
                     /locus_tag="IBJ56_002058"
     CDS             complement(7181..7669)
                     /locus_tag="IBJ56_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueT transporter family protein"
                     /protein_id="HAM3418308.1"
                     /translation="MKMKILTVNAIIAALYVVLGMIVAPIGFMALQFRIPEIFNHLIV
                     FNKKYFWGIIVGVFITNLFFSGLGWIDLVFGVAQSAISLLLMIGISKYVKGIIPRMII
                     NTILFSLTMAIIAWELVIVFDLPFLITWATTAASEFIVMGVGIPLMYLLNKRLNFRKM
                     ID"
     regulatory      complement(7675..7722)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
BASE COUNT         2525 a         1668 c         1214 g         2439 t
ORIGIN      
        1 aataattgct tcaaaagtag tcgcaatccc cgccggtaac cctttaattc gaatcgtaat
       61 attttttcta ataaataaac cgataagttc tacagaaatc agcgctgcaa aaatggcgat
      121 aaatagccct cttgaatcca gaaattctgt attaagcacc ccgtcaacca ttttcgtatt
      181 gaggatgagc gtcaccataa cagctgccat cacactatgt aacacaggta ctttcatttg
      241 ttttgcgtgg ctataggaaa ttgttatagc cgcataaatc gatagtaatc caaacgtaaa
      301 ttgaaacggt aagttaagcg ctgctgcatt ttgaacaaag aattctttca caacagaacc
      361 tgctggaaac atatttccga ttgctgaaat aatcagcgaa aatgatccaa taattaaaac
      421 cgagatcaaa gcaatcatcc cattttttat tgaggaaata tgacgttgtt tttcaattct
      481 agctgcgaca ggttcaaaat atttctccat aaaagcaata aaacggttca taaaagattg
      541 tttgttttta ctcgacatgt tgtttccctc cactttttta tttgttcagt ttaagaataa
      601 ttgcgtcttt taaaatgttt gcgccattaa cagtgccgta atctttcgta tcgatgactt
      661 gaattggttt attatattcc gccgcaattt cacttaaatg tttaagttga tgtttgattt
      721 gaggaccgac taaaataacg tcaaagtctt caatatgctc gcgtaattct cctgctggat
      781 gcgcctcaat tttcacatct gtattcgtga gcttttcact gttttgggcg atttccttca
      841 tttttgtaac cattacccct gtagatgcgc ctaagttaca cactaaaagt acatgtaatt
      901 gattgatttc catttacttt tcctcctctt ttcttaatgt tttaatctct tgatgcattt
      961 caatcatttc tcgaattaaa gtcgatgcta agatggtatt cattaaagta tcttgcgcat
     1021 gtacgagtaa aacggaaaaa tttgcttgtt cccctcttgt ttcttgaatc agcatttccg
     1081 tttgtacttt gtgcgcttca atcattaggt catctgcttc ttttaaaagt tgttctacta
     1141 attctgaatc tgattctttt gcggcctgta atgcttcaat taatttagaa aacgaatccc
     1201 ccgccagtga aattaatgaa aacgatattt tttctatgtc cattatgaaa ccctctctca
     1261 ttcaaagata gccgacttaa cgtaatgata aatatcacgt tttgagctag ccattttaat
     1321 tttttgcatt ttttcctcgt ccagcgctaa cttcattaat tgttccacga tcaagtgtgc
     1381 ctcttttgtt tttaaagcta aggtgaaaat gacatgaacc ggctcctcgt atctatcgaa
     1441 aaacatgatg ccatcctcaa taatcgtcac tccaatgcca tccatcaaaa caccgtcact
     1501 tgcccccgca tgtgcaatga caacacctgg cgcaacgacc atatacggcc cgtatgcttt
     1561 taagttatga atgatttttt catgataact cggctcaatg acttctaaat gctccaaaca
     1621 ttttgttcca agcttaattg cctgcctcca tgttgggcat gtttcttcca taacaatcgc
     1681 ttcttctgta aattgaaacg gtggtataag cctttttggt gtttcacctt catccgatat
     1741 aagcgcttcc aataaatcga attctaattt acttaaatta gtaatttgcg tgttttcgcc
     1801 aataatcgct aaaatcttac tgaacttatt aataatctgt ttatcacttt tgatgagttt
     1861 catccgtaaa tgcttttgca gtaattccat atcctctttt tgcaaatagc tatgaatccg
     1921 gagtactttt gcgtcttgca tatctggtaa atccactgtg ctaatcacaa aatcaaaatc
     1981 agccatcatc gcgcgtttga actttctgag gccaattgtt tgaatcgatt caaactcaaa
     2041 catacgcttt aactgaatcg caatcatttt tgaaacagcg acaccttccg ggcaaataat
     2101 cagcaaattt ggcttcattt caactgtttg tttattgcgt tgtacctcag atgcaaaata
     2161 aatagctaaa aatgaaattt cttgagagct gacagaaatc ggcaataacg gcttgagtgc
     2221 atccaaactt tccttcacac gcataaaaat ttctcgatta tcgcgcataa attcattaaa
     2281 aatcggattc tcgatagtaa ctccggcgcg aacacgccta atcattaact taatgtgtgc
     2341 tttgatttgc gtgaaaaaat ccgtatcgcc atgcacaaaa tccacttgat aaatttcacc
     2401 cattttttcg caaatacctg ttacaaatgc ttcaattacc gcctcatctt cacgcccata
     2461 ttgatactgc ttcaaagacc caataattgt tgctaacgcc tgatcaagct catctttaat
     2521 cataaaatct gctgtaaact gaaaatccgg tttggcttca tgctgcttta gtaaaatcgc
     2581 aattagcgtt aagtaaagct gctcatccat cgcacgtgtc atattctcct ccaccgaatg
     2641 cgcctcacga ttcacctcct gcaaaatctc cagttcaaaa agattataaa aaaataactc
     2701 gcctttttta gataagctat tttccgaatc taaaaactga taaaattcgc ggatattaat
     2761 aaaacgcaag aaacttctag caaaaagcga tgttttcgta attaaatttc cagtcactag
     2821 aaagccatgc ctaggctgat gcgataaatc taaattattt aaaaaaagtt ctccttcaat
     2881 agcacgtaga tgatttagca cagaggatct ggaaataaac aggacttctt caaaataagt
     2941 aaccgggagc acttcttcac ttaaaagcag ttttagcagt aaaaattgct gcacttcttc
     3001 ttggctgtaa cgatattttt tcggcgtaat ttgttgttta aatttacgca caaccggatt
     3061 tacgatattc ttttccggaa gtagcacccc tttccttgta tgtctgataa gagctggtaa
     3121 tgtttgctca tggagaaaaa tatcgatttt ttccaaacta taacgaacac ttcgctccga
     3181 acaaccaagc gcgttagaaa tataaccaat atttttaaaa tcttcctgct ccataagaaa
     3241 atctaaaatt tgaatacact gctgatttag tttcatcagg tatcactcct ctttctaaat
     3301 tcaatttatc attttcatga tagggcttac aataagctat atagctattt ttgtcagata
     3361 cgtagggaca aaaaaactat ccattttact ataactggaa aaaaaccttg ccggaatagg
     3421 tcggagctac tgaaagcaca aaaaaagcct tctacattca ctgtaaaagg cctattattt
     3481 gaactattta tcttttttca tatagaaagt taaaataatt gcgatgaaaa ccattaaaaa
     3541 tccaacaatc ggtgtataac ccaaaccaat atattccgta actaatccgc caataaatgc
     3601 acctactgct atcccaacat taaaagctga aatattaagc gccgaagcca tgctcaccgt
     3661 ttctggcaaa taccgctctg ccaattgcac gacatataac tgcaaaccag acacattcat
     3721 aaaggcaaaa aatcccatca acataatagt cattaatcca aaaatcgcgt tggtcgatgt
     3781 aaattgaagt aataataacg taatcccttg caaactaaac atcacgaaca gtgccttagc
     3841 cgggcgctca ttcgcaaaat gcccaccaat cgtattccca atcgcaacca tcacaccata
     3901 cacaataagt aaaataacaa tcatgcttgt agaatagccc attccgctaa acatcggcga
     3961 caaatacgta taaaccacaa aagtaccacc atagccaaac gctgtcatga gtaacaccat
     4021 cacgattttt ttattaacta ataattgtcc aatcgcttta aatgaaatac tttttccatt
     4081 ggataagttt ttcggaacga ggaaaaaatt agcaataatc gcaatcacgc caatcgcaac
     4141 aataaacagg aatgacatcc gccaaccaaa tagttgcccg ataaacgtcc caagcggcac
     4201 ccctgtcaca gtcgccaccg tcaaccctgt aaacatcacc gcaatcgcac tagctcgttt
     4261 gctcggatga accacatcgg cagcgataac agaagcaatc gacataaaca ccccatgcgc
     4321 aaacgccgca acaacacgcc cagtaaggag cattccaaaa ctcacagcaa atgccgagac
     4381 aagattccct atcagaaaca cgagcatgac taataataac aaatttttac gattcatctt
     4441 cgccgtcata gttgttaaaa ccggcgctcc aaccatcaca ccaagcgcat aaatcgatac
     4501 agttaaacca gccgtactaa tcgacacacc catactagaa gaaatcagcg gaagcagtcc
     4561 cacactaata aattctgttg aaccaatccc aaacgcacta atcgctagcg ccaaaagtgt
     4621 caaattagga tttacttttt tcatatccac atcgttcccc cctaaaaaat tgcaaattgt
     4681 ttcgttctgt tatacagtat cttatatacc ttacagaata acaagaaggt acttaaaagt
     4741 catatagata ctaaaaagtg cctataggag gattacgatg actaaagtat ataatatcgg
     4801 cgtcgaagct acactagaag ttataggcgg aaaatggaaa ccagtcatcc tttgccattt
     4861 acgcgaaggc aaaaaacgaa ctggcgaatt aaaacgactc atccccaaca tcacacaaaa
     4921 aatgctcaca caacaattgc gcgagctgga aaaatccggg gttattgtcc gcaaagtata
     4981 tgaacaaatc ccaccaaaag tcgagtattc attgagtgaa tacggcgaat cgttgtcgga
     5041 gattttgaac aaactttgct tatggggcga gaatcatgtg gatcttttgc tcactaagaa
     5101 tgaagatatt gttttgttga aacgagatta atagaaaaat agccacctct cgggtggcta
     5161 tttttaatga ttccctatac ttaatatccc tgaatcaatt tcttctccat ctaaaaacca
     5221 atacccatga taatccccac tgagcgccgt aaacggaact ggtgtcttcc ctacttccgc
     5281 tacctttcta agtaagtaat tccgcaaaat ccaaccatca tttaaagaac gctgttttaa
     5341 attcaaaatc cgttctattt ttacttcgct tgtatttagt tctttcgcta cttcggcaat
     5401 cgttaaatcc gcaagcgcta aattctccgc aaactcactt tttgttgctt tgatttgttc
     5461 ttttgataaa gtcatttttg aattccacct tttataaatg taataatttt tcagcatttt
     5521 cgtgagcgat ttttgctttt acttcatccg ttaaatcaag cgtatctagg aaagtcctag
     5581 cattttctgg ttttacaaaa ggataatcta gcgcataaat aagatgattt tcatctaatt
     5641 catttaataa aaacttccat tcattttggt ataataagcc gcttggtgtc acatacacat
     5701 tcgtccggta gtaatcagaa attttccgtt caagcgttgt ccagtggccg agtgtattgt
     5761 ccattctgtt taaaaacatt ggcaccattt cacctaaatg acctgtgatg atttttaaat
     5821 tcggtaattt atcaaatata cctgaaagaa tcatccgcac gacttgaatg ccaacatcca
     5881 tatgccaacc aaaaccagca gatgaaaata cccctgtcac cacatcagac caagcatcac
     5941 tggcaaaata ttgttctgta atagtttctg ggataaacga tggatggaac gaaatcggta
     6001 catctagttt ctccgccatt tcgaaaatcg gataataaaa gcgattatca aaatatttgt
     6061 tttcaaactg cccttttaca agtgcacctt tgaaaccaag ttcttctacg gctcttttta
     6121 attcaatagc agcatcttct ggtgatccta ctggtaagac agcaaaaccg gcaaatcgcg
     6181 taggattttg ttgaatcacc ttcgctagtt catcattagc tcgcttacac agagctaccg
     6241 aaatttttgg atctaagttt tgcggagaac tatttccata agagagtact tggatatcaa
     6301 taccatgttg gtccataaat gctaaacgtt tttctgtatc ttgcatttcc gctgctgaag
     6361 gaagttcctt ttgcatatat tgaaacattt ccggactaac ctgtccactt actaaatttc
     6421 cagtgacttt gttgatttca ttcgtaatga cttcggattc aaaatgttct tctattgtta
     6481 taattttcat gttcattcct ccttaagtaa acaatacccc tttttaagtt gctaaaatag
     6541 ccacatttcg atacactaat aacaattatg tatcataaaa aggagagttt tatgaataac
     6601 tacgtaaaag tgcatcaacc gttgaatgtt gatttacgta cacaaaaaac acaaaccaaa
     6661 ctatatacgg ttttggagag gttttatgtg gaaggtagaa catttgaatc aatatctata
     6721 aaagatttat gcgaacaagc gcgagtatca cgagccactt tttatcgtca tcatgaggag
     6781 attattcaag tgattgaagt ccagattttg cgaaccatgc agtacttctc tttggaattc
     6841 gaccaaatta ttttaacaaa agaaaatatc caacgcttaa tcctccgaac tattcaaaaa
     6901 aatccgcttt tatttcaagc gattttttgg agccgggcag aaaatatttt tgtcgatgta
     6961 gtgtctggag aaatacttcg aattagtttg ttaaaagaag tttccttttc agatagtcac
     7021 tttattccta attattttgc taggatgatt ttaagtttag cgacagaaat tcagcaatcg
     7081 aataaagact atacgaatgg tcaattagtt gaattgatac aggaggcagc tcgcttttta
     7141 caaaaataaa aagagcctaa gttcccttag actctctcat ttaatcaatc attttacgga
     7201 aattcaaccg tttatttaat agatacatta gcggaatccc gacacccatt acgatgaatt
     7261 cacttgcggc tgttgttgcc caagtaatta ggaacggtaa gtcaaaaaca attactaact
     7321 cccaagcgat aattgccatc gttagcgaga aaagaatcgt attaataatc atccgcggaa
     7381 taattccttt aacgtattta gaaattccaa tcattagtaa aagcgagata gccgattgtg
     7441 ctacaccaaa aactaaatca atccacccta atccagaaaa aaataaattc gtaataaaca
     7501 cacctacgat aataccccaa aagtattttt tattaaagac gattagatgg ttaaagattt
     7561 ctggtattct aaattgtaat gccataaacc caattggtgc aacaatcata ccgagcacta
     7621 catacagtgc agcgataatt gcattcaccg tcaaaatttt cattttcatt atttttcctc
     7681 ctagtttttt tacgtgggat ggtatgaatg aaccacgtgt ggcaattttg ccaacatgct
     7741 attttctcat atttggaagt taatgtaaat gaattattgc acataaaaaa cggctactta
     7801 gagtatagcc gtttttttat ctgctatgtt tcccattcaa cctttt
//
LOCUS       DABQVC010000132         7671 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.132,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000132 DABQVC010000000
VERSION     DABQVC010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7671
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.132"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            109..1824
                     /locus_tag="IBJ56_002059"
     CDS             109..1824
                     /locus_tag="IBJ56_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HAM3418309.1"
                     /translation="MIDKRLFQLVEKKSLVLLILFRVLSLGLMIGLWFVFAQQLTHYL
                     EGQSVDWLWLIGTVLVVLVGKAILTKLAEKQIYQASAELRLSMRRAVMEKAFRLGNNE
                     GQLPASTLTQLAVDGIEQLEIYYSRFLPQLFYCLIASLMIFGSLVGFAWQPAIVLLIC
                     MPMIPIVIMAVMKIAKRILSGYWSDYTNLGTKFHENLSGLSILKAYEQDKYKQEEIVS
                     DAERFRKATMSLLSMQLNSITIMDIISYSGAALGIGMSLIMFTNGNISMTGMLMFLLL
                     SAEFFIPMRQLGSLFHVAMNGISACSKLFAYLELKEQVYGSEELAKPLEKMEVRHLTY
                     TYEEGKAKALQDISVNFNKGSFSALVGKSGSGKSTFVRVLLNQLPGYQGEIVWNDVPL
                     ASLSGETIRKQAVLVDNHGYLYANSIRENLLIGNPAANDSDLWNVLEQVSLADFVRKL
                     PEQLNENLEENGSNLSGGQRQRLLLARALLCQAEVYVFDEITSGVDLESEKIILLVLQ
                     KLAKEKIVLFISHRLYNVLDADQVLVFDAGKLLEVASPERLQQESNYFKNYFLEEEAL
                     LKGGA"
     gene            1826..3472
                     /locus_tag="IBJ56_002060"
     CDS             1826..3472
                     /locus_tag="IBJ56_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418310.1"
                     /translation="MSEWTIIGWLLKFVKPLRGKMVLAILLGIISNLSVIMISLIGTY
                     GIITVILQQHLNPYKWLFVMVACGVVRGLARYSEQYLNHNIAFRLLAIIRERIFATLR
                     KLGPARLSGKKSGDLVAAITTDVEALEVFFAHTISPVFIALGTTIVTVGFLASYDVGL
                     ALILLLGQILVGVVLPVISYKRNKKIGTAYQQEFVGLNQMVMESIASLQDIFQFKLGE
                     ERLSKLETQGEKLNKQYKKRIKQGSELQIFGEWVLIGTATLILVLGSLWQLPLETVLI
                     GTVLSLSSFGSVLALNALGTALLTTFASGKRLYTLTEEKPVVLFNGQLELSDFESAEL
                     DKVSFSHDGKQPLLNEISLALPKGKWLGVGGESGSGKSTLVKLLMRYWDPKGQIKLND
                     KELPEITESSLHRIEGVMEQSTFLFEDTLGNNIRLGKKDATLEEVKEAARKAAIDTWI
                     ETLPEGYDTIIGGQSRNLSDGERQRIGLARLFLHDAPLFLLDEPTSNLDYINEQAILN
                     TLRSEIQDKTVLVISHRATTLDLAEEQLFIENGALKRAAK"
     gene            complement(3509..3817)
                     /locus_tag="IBJ56_002061"
     CDS             complement(3509..3817)
                     /locus_tag="IBJ56_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HAM3418311.1"
                     /translation="MYLKENANYLYCTAVIQTTGKVSYEQLVEHLEALRAKTVKEPGC
                     VLFEIVPLESALGRFALWEIWQNQDAFYYHHEQNYTKEFFAAKLDTVEFFESSEKVNL
                     "
     gene            3885..4232
                     /locus_tag="IBJ56_002062"
     CDS             3885..4232
                     /locus_tag="IBJ56_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3418312.1"
                     /translation="MYIKDFATKTGLSIDTLRYYEEEKLLIPARNEKNYRVYTEEDYC
                     WVQLLLKMKQTGMTITNIKNFAALQKQGDMTLPNRIEILNNHMKNLYEQQKDLAETIS
                     FVAKKVDGYREKL"
     gene            4257..5396
                     /locus_tag="IBJ56_002063"
     CDS             4257..5396
                     /locus_tag="IBJ56_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014654245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418313.1"
                     /translation="MINNEIREVIGLHQINENDQKLTVENAEVIIRNHVLIKLILNQA
                     DCYKEIDYNLELTDTNELVGRKNAKPKALTTKTILKAKTKELRLKINKISHRIELKLG
                     VQHFENIYFEKRMLLTKENVQEKIAANYGSDWLSILDKAKLKVKTRQTIQQGSIFSYP
                     IGNEYGFGLVIGCFQAFRKQKIMPQDSSHYLRLMMGVPLVIRSFNYTSKQNTVDLLLL
                     KKQELLNPEFIMDDLVLRGDFPIIGRVDLEEADISFPMNFSFNGVSTTYAGYQAIGEP
                     DRDIIKKYEEEITVRFDWGFGSKTMPAKEFLKRSSGKESFLPYSGLGMTPIAGYSKKL
                     VSPKSIFSEEELKQIYAVLDINGEMSFDDFNENYNGLTAQNILSI"
     gene            5516..5986
                     /locus_tag="IBJ56_002064"
     CDS             5516..5986
                     /locus_tag="IBJ56_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418314.1"
                     /translation="MEITLQQPTSADFSFIEWLWGDLATTEVLGGPFSFPEEMRMDWL
                     KSKSQASNAYFIIKKGIESVGEVSFRDFEKGTAHLNIKVAACYRGQRIAQKALQLFLD
                     FFQTDCGGIVMLDEVRRKNEAGIGFLVKAGFEVIEEKEWTMVLKWSAQAEGGFE"
     gene            5983..6273
                     /locus_tag="IBJ56_002065"
     CDS             5983..6273
                     /locus_tag="IBJ56_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418315.1"
                     /translation="MSKERCACCNCLTIDVRGEFEICPICFWEDEGYFVFDKEEIYSR
                     YQDIFSIEDLLNIRSSANNGLTLLDARQNFKLFGACEVAMKKYVREPNAEEL"
     gene            6553..>7671
                     /locus_tag="IBJ56_002066"
     CDS             6553..>7671
                     /locus_tag="IBJ56_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HAM3418316.1"
                     /translation="MKKTIKITTSLLLSFACVFSIGDFTKPHTVEAETVYSLTDSKPI
                     NEIFPDPKLAQVVANWLKLPSATSPVTQNQLNTVKSLHFDSKGVQSLEGVEYLKNLTQ
                     VFGYGNQVSDLGPLSNLTQLEIIQMPRNQISDLTPIANLTALMSLDFEFNNLQTIEPI
                     KNLTNMLELNVSANPISDISAVKNMTQLEFLTIRDCEVSDLSPVENLSNMLMFWAGRN
                     NISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTL
                     ETLTLSFNQIIDISSLKNLTNLTRLELENQTRVLDAVEVDDPLILPAPVIDENGSRVQ
                     PTKVSHAGIYANGEITWEGLQSNYILNYEYNLPVAIGSL"
BASE COUNT         2536 a         1104 c         1655 g         2376 t
ORIGIN      
        1 gcaagcaaat gggaaaagta gtattgaaaa tggcttatac tgccgaaaaa tcaaagaaag
       61 tattaaggta tcttgaaacg aaccttaatg taactcgggg gaagtacaat gattgataag
      121 cgtttgtttc aactggttga aaagaaatct ttagtgttat taattctttt tcgtgtgctt
      181 agtttagggc tgatgattgg tctttggttt gtttttgctc aacaattaac gcattattta
      241 gagggccaaa gtgtcgattg gttatggctt attggaacgg ttttagtcgt tttagttggc
      301 aaagcgatac ttacaaaatt agcggagaaa caaatttacc aagcatcggc ggaattgcgt
      361 ttatcaatga ggcgcgctgt gatggaaaaa gcttttcggt taggcaacaa cgaaggacag
      421 ctaccggcat caactttaac gcagctcgcg gtagatggga ttgaacaatt agaaatttat
      481 tattcgcgtt ttttaccgca attattttat tgtctcatcg cttctttgat gatttttgga
      541 agtttagttg gatttgcgtg gcagccggcg attgtgctat taatttgtat gccgatgatt
      601 ccgatagtta ttatggcagt gatgaaaatt gctaaacgga ttttgagtgg ttattggtcg
      661 gattatacga atttaggaac caaatttcat gaaaatttaa gtggcttgag tattttgaag
      721 gcttatgaac aagataaata taagcaagag gaaattgttt ctgatgcgga acgtttccgt
      781 aaagctacaa tgagtttgtt atcgatgcaa ctgaattcaa ttacgattat ggatattatt
      841 tcgtatagtg gagcggcact tggtatcggt atgtcgttaa ttatgttcac aaatgggaat
      901 ataagcatga ctggcatgtt gatgttctta ctactaagcg ccgaattctt tattccaatg
      961 cgtcaactcg gatctttatt ccatgtggcg atgaatggga ttagtgcttg tagtaaatta
     1021 ttcgcttatt tagagttaaa agagcaagtt tatggctcag aagaattagc taaaccgtta
     1081 gaaaaaatgg aagttcgtca tttgacatat acatatgaag agggtaaagc taaagcactg
     1141 caagatatat cagtaaattt caataaagga agtttttcag cacttgtcgg aaagtctggt
     1201 tcaggaaaaa gtacatttgt ccgagtatta ttaaatcaat tacctggtta tcaaggggaa
     1261 attgtttgga atgatgtacc gttagctagt ttgagcgggg aaactattcg taaacaagct
     1321 gtgttagtag ataatcatgg ttatctttat gcaaatagta ttcgggaaaa tttattaatt
     1381 ggtaatccag ctgctaatga tagcgattta tggaatgttt tggagcaggt tagtttggct
     1441 gattttgttc ggaagttacc cgagcaatta aatgagaatt tagaagagaa tggaagtaat
     1501 ttatctggtg ggcaaagaca gcgattgtta ctggcgagag cattgctatg tcaagcggaa
     1561 gtctatgttt tcgatgaaat tacgtctggt gtggatttgg aaagtgaaaa aattattctt
     1621 ttggtgttgc agaaattagc taaagaaaaa atcgtgctct ttatttcgca tcgcttatat
     1681 aatgttttgg atgcggatca ggtactcgtt tttgatgcgg ggaaattgct ggaagtggcg
     1741 agcccagaac gattacagca agaatctaat tacttcaaaa actacttttt agaagaagaa
     1801 gcattgctga aagggggagc atgacatgtc agaatggaca attattggct ggttgttaaa
     1861 gtttgttaag ccattacgag gaaagatggt tttggcgatt ttacttggta ttattagtaa
     1921 tttatcggtt atcatgattt ctttaatcgg tacgtatggc attatcacgg taattttaca
     1981 gcagcatctg aatccttata aatggctctt tgtaatggtt gcttgtgggg tggttcgcgg
     2041 tttggcacga tattcggaac agtatttaaa tcataatatt gcctttcgtt tgcttgcaat
     2101 tattcgtgaa cgtatttttg cgactttgcg gaaactagga cctgctcgtt tatctggaaa
     2161 gaaaagtggt gatttagttg ctgcgattac aacagatgtc gaggccttgg aagtgttttt
     2221 cgcgcatact atttcaccag tttttatagc actaggtacg acgattgtaa ctgttggctt
     2281 tttggcaagc tatgatgttg gtttagcgct gatacttttg ttaggacaaa tcttggttgg
     2341 tgtcgttttg ccagtgatta gttataaacg aaataaaaaa atcggaacgg cttatcaaca
     2401 agaattcgtt gggctcaatc aaatggtaat ggaaagcatt gcaagtttac aagatatatt
     2461 ccagtttaaa ttgggcgaag agcgtttgag taaattagaa acacaaggtg aaaagctcaa
     2521 taagcagtat aaaaaaagaa taaaacaagg aagcgaactc caaatatttg gtgaatgggt
     2581 gctaattggt acggcgactt taattttagt gctaggtagt ctttggcaat taccgcttga
     2641 aacagtatta attggaactg tgcttagtct gagctctttt ggatcggtat tggcattaaa
     2701 tgctttagga acagctctgt taactacttt tgctagtggt aagcgattat atacattaac
     2761 agaagaaaaa cctgtggtat tatttaacgg ccagcttgaa ctatcggatt ttgaaagcgc
     2821 ggagttagat aaagtgagtt ttagtcatga tggaaaacaa ccacttttaa acgaaatttc
     2881 gctagcgctt cctaagggaa aatggcttgg cgtcggtggg gaaagtggca gcgggaaaag
     2941 taccttagta aaactactga tgcgttactg ggatccaaaa ggccagatta aattaaatga
     3001 taaagaactc cctgaaatta cagagtcttc gcttcatagg atagaaggtg taatggagca
     3061 aagtacgttt ttatttgaag acacacttgg taataatatt cgcttaggga aaaaagatgc
     3121 tactttggaa gaagttaaag aggcggcccg aaaagctgct atcgatacat ggattgagac
     3181 tttgccagaa ggttatgaca cgatcattgg cgggcaatca cgaaatttat cagacggcga
     3241 acgccagcgg attggcttag ctagactatt tctccatgat gctcccttat ttttattaga
     3301 tgaaccaaca agtaatttgg attacattaa tgaacaagcg attttaaaca cgctccgttc
     3361 agaaattcaa gataaaacgg tgctggtaat ttctcaccgg gccacaacat tagacttggc
     3421 tgaagaacaa ttatttatag aaaatggtgc attgaaacgt gcagcaaaat aataaaaaca
     3481 gcttgtataa attacaagct gtttttattt ataaatttac cttctctgag ctttcgaaaa
     3541 attcaaccgt gtcaagtttc gctgcaaaaa attcttttgt atagttctgt tcgtgatgat
     3601 agtaaaaggc atcctgattc tgccaaattt cccacaaagc aaatctgccg agtgcacttt
     3661 ctaaaggaac aatctcgaat aaaacacaac cgggttcttt caccgtttta gcgcgtaacg
     3721 cctccaaatg ttcgactagc tgttcataag aaactttccc ggtagtttga ataactgctg
     3781 tgcaatataa ataatttgcg ttttctttta aatacatttc ttctcctcct ttgactatgt
     3841 taagcttaag gtatggagta cacccgatag caaggaggaa ctagatgtat attaaggatt
     3901 ttgccactaa aacggggctt tcgattgata cgcttcgata ttatgaggaa gaaaaattat
     3961 taatacctgc tagaaatgaa aaaaattatc gtgtttatac ggaagaagat tattgctggg
     4021 tacagctttt acttaaaatg aagcaaacag ggatgacaat aacaaacatt aaaaattttg
     4081 ctgcattaca aaagcaagga gacatgacac ttccaaatcg gatagaaatt ttaaataatc
     4141 atatgaaaaa cttgtacgag caacagaaag atttggcaga aacaatttcc tttgtggcta
     4201 aaaaagtgga tggatatcga gagaagttat aaatacaaca ggaaaggcga gtagagatga
     4261 ttaataatga gatacgagaa gtgatcggat tacatcaaat taatgaaaat gatcagaaat
     4321 tgactgtgga aaatgcagaa gtaatcatca gaaatcatgt gctgataaaa ttgattctta
     4381 atcaagctga ttgctacaaa gaaatcgatt ataatctaga gcttacagat acaaatgaat
     4441 tagttggccg aaaaaatgca aaaccaaaag cattgacgac aaaaacaatt ttaaaagcta
     4501 aaaccaaaga attaaggttg aaaataaata aaatcagtca tcgaatagag ttaaaactag
     4561 gtgttcagca ttttgaaaat atctattttg agaaaaggat gcttttaacg aaagaaaatg
     4621 tacaagaaaa aattgctgca aattatggaa gtgattggtt gagcatatta gataaagcaa
     4681 agctcaaagt gaaaacgaga caaaccattc agcaaggttc cattttttct tatccaattg
     4741 gaaatgaata tggtttcggg cttgtgattg gttgttttca ggcgtttcgg aaacaaaaaa
     4801 taatgcctca agatagctcg cattacctcc gattgatgat gggagttccg cttgttattc
     4861 gtagctttaa ctatacaagt aaacaaaata cagttgattt attacttttg aaaaaacagg
     4921 agctcttaaa tccggaattt attatggatg atttagtgtt gcgtggggat tttccgatta
     4981 ttggtagggt agatttggaa gaagcggata tttcctttcc aatgaatttt tcttttaatg
     5041 gagtgtctac aacgtatgcc ggttatcaag caataggtga accagatagg gatattatta
     5101 aaaagtacga ggaggaaatt accgttagat ttgattgggg atttggaagc aaaacgatgc
     5161 ctgcgaaaga atttttgaag agaagtagtg ggaaagagtc atttctacct tattctggat
     5221 taggaatgac cccaattgct ggatattcga aaaagttagt ttctcctaaa tccatctttt
     5281 cagaagagga actaaagcaa atttatgcgg ttttagatat aaacggggaa atgtcgtttg
     5341 atgattttaa tgaaaattat aacggcctta ccgctcaaaa tattttatcg atttgatggc
     5401 tttagtggta ctaattaaaa actttcccaa tttgcaccaa atgataacat tgtaaaatgc
     5461 aatcatcaag ttcattagtg aacttttaac taccaagtaa acaaggagga atttcatgga
     5521 aatcacttta caacaaccta cctcagctga cttttccttc attgaatggt tatggggaga
     5581 tttggcaacg acagaagtac tcggtgggcc attttctttt cctgaagaaa tgcgaatgga
     5641 ctggctcaag tcaaaatctc aagcgagcaa tgcttatttt attataaaaa aaggtataga
     5701 atctgttggt gaagttagct ttcgtgattt tgaaaaaggg acagctcatt taaatattaa
     5761 agtggctgca tgttaccggg gccagcgaat cgctcaaaaa gctttgcaat tattcttgga
     5821 tttttttcaa actgattgcg gtggaatagt tatgttggat gaagttagac ggaaaaatga
     5881 agcaggcatt gggtttctcg tgaaagctgg tttcgaagtt atagaagaaa aagaatggac
     5941 gatggtgctc aaatggagtg ctcaagcaga aggaggtttt gaatgagtaa agaaagatgt
     6001 gcatgttgta actgtttaac aattgatgtt agaggcgagt ttgagatttg tccgatatgt
     6061 ttctgggaag atgaaggtta ttttgtcttt gataaggaag agatttattc tcgctatcaa
     6121 gatattttct cgatagaaga tttgttaaat attcgctcta gtgctaacaa tggtttaacg
     6181 ttattagacg cacgacaaaa tttcaaactg tttggtgctt gtgaggtggc aatgaaaaaa
     6241 tatgtaagag agccaaatgc agaggaatta taaaaaatga gcaagtaagt tagatttaaa
     6301 agcctaactt acttttttag tagttaaaaa agctgatttc ttatattggt tcatttttta
     6361 gacatatttt aatgaaaaat aaatgggtat gataagtacg gtgaaagcaa tgttaccaag
     6421 ggtgaatggg aattagcttc cgaataaaag gagggaaaat aatttcctga aacaagaaaa
     6481 attgcctcct tattctgttg atttgattat ataaacagag tattatgttg gttgacaatc
     6541 aaggaggata ctatgaaaaa aactatcaag attacaacca gtttactttt gagctttgct
     6601 tgtgtattta gtattgggga ttttactaag ccacatacag tcgaagcaga aacagtctat
     6661 tcgcttacag attcaaagcc gattaatgaa atttttcctg atccaaagct cgcgcaagtt
     6721 gtagcaaatt ggttaaagct tccctctgca actagcccag ttacgcaaaa ccaattgaat
     6781 acagttaaat ctttgcactt tgattcaaaa ggtgttcaaa gtcttgaagg agtagaatat
     6841 ttaaaaaatc tcacacaagt atttggctat ggtaaccaag tgagtgatct agggccatta
     6901 agtaatttaa cgcaactaga aatcattcag atgccaagaa atcaaataag tgatttaacc
     6961 ccaattgcga atttgacagc attaatgtca cttgattttg agtttaataa cttacaaacg
     7021 attgaaccga taaaaaattt aacgaacatg ttagaactga atgttagcgc caatcctatt
     7081 tcggatatta gtgccgttaa aaacatgaca caactggaat ttttgactat aagagactgt
     7141 gaggtaagtg atttatcgcc agtcgaaaat ctgtctaata tgctgatgtt ttgggcgggg
     7201 agaaataata ttagtgatat taccccactc aaaaatatgt ccaaactgct tggtttaagt
     7261 ttatttggga atcaaatcaa ggatgtgagt gtaattaaaa atcttactag ccttgaagac
     7321 ttcgatataa aagcgaatca ggtgagcgat attagtagtt tagcaacatc aactacactc
     7381 gagacattaa ctcttagttt caaccaaata attgatattt cgtccctgaa aaatttgacc
     7441 aatttaacta ggttagaact agagaatcaa acgcgtgtat tagatgcggt tgaggtagat
     7501 gatccattga ttttacccgc tccagtaatt gatgaaaatg gcagcagagt acaaccgaca
     7561 aaagtaagtc atgcgggtat ttatgcaaat ggcgagatta catgggaagg gttgcaaagt
     7621 aattatattc taaattacga gtataattta cccgtagcaa ttggttcgtt a
//
LOCUS       DABQVC010000133         7585 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.133,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000133 DABQVC010000000
VERSION     DABQVC010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7585
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.133"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(196..912)
                     /locus_tag="IBJ56_002067"
     CDS             complement(196..912)
                     /locus_tag="IBJ56_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3418317.1"
                     /translation="MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMA
                     LNNNYEVILLDLMMPGKDGIEVCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYI
                     VKPFSPREVVLRVKAVLRRAKQSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIG
                     LTPKEYDLLYYLARSPDKVFDRESLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSED
                     AARMIVTVWGLGYKFEVPED"
     gene            complement(1095..1829)
                     /locus_tag="IBJ56_002068"
     CDS             complement(1095..1829)
                     /locus_tag="IBJ56_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HAM3418318.1"
                     /translation="MERLQKVIANAGITSRRKAEKLIQEGKVTVNGKVVTELGVKVSG
                     TERIEVEGIQLTKEEHRYFLFYKPRGTVSAVTDDKGRTTVADYFADIPERLYPVGRLD
                     YDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVVIDGRKTA
                     PAKVKVRSSDKTKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLNLRGLN
                     AGERRELSHHEVKQLKTEARFGKNKK"
     gene            complement(1832..2428)
                     /gene="scpB"
                     /locus_tag="IBJ56_002069"
     CDS             complement(1832..2428)
                     /gene="scpB"
                     /locus_tag="IBJ56_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HAM3418319.1"
                     /translation="MNREEQLGVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLEL
                     LSDRYNGSADRGLILLELAGTFQLATKKAHAEFLRKLVDVPSNTVLSQASLETLAIIA
                     YRQPVTRMEVDEVRGVQTDGPIRTLVAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGL
                     NSLEDLPKLADPATDEPDQNEMDLFFDRFNQSKEQEEE"
     gene            complement(2425..3174)
                     /locus_tag="IBJ56_002070"
     CDS             complement(2425..3174)
                     /locus_tag="IBJ56_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HAM3418320.1"
                     /translation="MVEMNFKVDAFEGPLDLLLHLIGQLEVDIYDIPMAEITDQYMEF
                     VHTMQEMELDVASEYLVMAATLLAIKSKMLLPKQELEIDYDTLEEEEDPRDALVEKLM
                     EYKRFKEAAKELKEKEAERSFYFSKPPMDLAEYDDGTKVAELDVSLNDMLSAFNKMLR
                     RKKLNKPLHTRITTQEISIDQRMDSVLEKLNLQVNHRLRFDELFEEQTKEQLVVTFLA
                     LLELMKRKLVEVEQAESFADLYVQGKGEEIS"
     gene            complement(3190..4500)
                     /gene="lysA"
                     /locus_tag="IBJ56_002071"
     CDS             complement(3190..4500)
                     /gene="lysA"
                     /locus_tag="IBJ56_002071"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HAM3418321.1"
                     /translation="MTFERLGTMNVNAEGHLEIGGVDTLKLTEKYGTPLYVYDVALIR
                     DRARGFKKTFEELGVKAQVAYASKAFSAVAIYQLMAEEGLSLDVVSGGELYTAIKANF
                     PPERIHFHGNNKSAEEIHMALDYGIGCFVIDNYYEISLLEDILIERNEKASVLIRVTP
                     GIEAHTHDYILTGQDDSKFGFGLTNGQAEKAIKQVLHASASFDLIGLHCHIGSQIFET
                     TGFKLAARRIMDKLVEWHQTLGFDSKVLNLGGGFGVRYTAEDEPLEPSEYVRQIMDEV
                     RDVANNNDIDIPEIWIEPGRSLVGEAGTTLYKVGSRKEVPGIRNYIAVDGGMSDNIRP
                     ALYDAHYDAVLAANPEKVAEETVAIAGKCCESGDMLIWDLPLPKSNAGEVLAVFCTGA
                     YGYAMASNYNRIPRPPVVFVENGVDKLIVARETYENLVQNDLSL"
     gene            complement(4681..5499)
                     /locus_tag="IBJ56_002072"
     CDS             complement(4681..5499)
                     /locus_tag="IBJ56_002072"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HAM3418322.1"
                     /translation="MSLEKVNEAVVKIRESYNGTPKIGLILGSGLGVLADEVNNPTKL
                     SYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKEL
                     GVEVLVVTNAAGGVNELYSAGDLMLISDHINFTGTNPLIGPNDEHFGPRFPDMSEAYN
                     LALRVDARLIAQELNLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVII
                     ANHAGLRVLGISCITNMAAGILDQPLSHTEVIETTDQVRSTFLQYVKAIVAKIS"
     gene            complement(5518..6702)
                     /gene="deoB"
                     /locus_tag="IBJ56_002073"
     CDS             complement(5518..6702)
                     /gene="deoB"
                     /locus_tag="IBJ56_002073"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HAM3418323.1"
                     /translation="MPDKFKRVHVVVMDSVGIGEAPDAAKFGDFDVDTFGHIAKHVGG
                     LKMPEMGKLGLSNIREIDGIKKAEKPLAYYTKMQEASNGKDTMTGHWEIMGLYIDTPF
                     RVFPDGFPDDLINQIEEKTGRKVIGNKPASGTEIMAELGEEHVKTGALIVYTSADSVL
                     QIAAHEDVVPLEELYEICEFCRKITLDDPYMLGRIIARPFVGEPGAFVRTPNRHDYAL
                     KPFKPTVMDALKDGGKDVIAIGKISDIFDGEGVTESIRTKSNMDGMDQFIAVLDKDFN
                     GMSFLNLVDFDALFGHRRDPQGYADALVDFDGRLVEVMEKLTDDDLLIITADHGNDPT
                     YSGTDHTREFVPLLVYSPRFKNGGSELELRKTFADLGATVADNFEVKMPEYGTSFLKD
                     LK"
     gene            complement(6731..>7585)
                     /gene="xerD"
                     /locus_tag="IBJ56_002074"
     CDS             complement(6731..>7585)
                     /gene="xerD"
                     /locus_tag="IBJ56_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HAM3418324.1"
                     /translation="VERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGF
                     MAFARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLD
                     DVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGD
                     KERIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIA
                     KESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDV
                     YKQFHPRA"
BASE COUNT         2154 a         1724 c         1211 g         2496 t
ORIGIN      
        1 attgcaacta aaaatccaga aataactaaa atccctatca gtaagagaat aatggtactc
       61 caaattttcc caacaatact attccaaatc ttcatctatt ctcacctcgg tcctcgcaaa
      121 aaaataacga acaaagcacg tgcggcataa cacttgccga ttaaacgtct ttgcccgtta
      181 tcttagtctg gtttattaat cttctggaac ttcaaattta tatccaagac cccaaactgt
      241 tacaatcatt ctagcggcgt cttctgatac atcatgcaat ttttcgcgaa gccttttaac
      301 gtgtgtatca attgttcgca aatcgccaaa gaattcataa cgccatactt cttttaaaag
      361 agactcgcgg tcgaatactt tatccggaga tctcgctaaa taataaagca agtcatattc
      421 tttcggtgtc aaaccgattt cttttccgtc gacaataaca cggtgagctt cgttatcaat
      481 tttcaaatgt gggaaggtaa taatgtctcc cggtgttcct cctgctgatt cttctgagga
      541 ttgtttggca cgacgaagaa cagctttcac gcgaagcaca acttctcttg ggctaaatgg
      601 ttttacgatg taatcatctg caccaacttc aaagccttgt actcggttag cttcctctcc
      661 ttttgcagtc aacatgacaa caggtgtgga tttaaactct ctcagttcac gacaaacttc
      721 gatgccatct ttaccaggca tcattaaatc aagtaggatt acttcataat tattgttcag
      781 cgccatgctt aatgcttgat caccatcact agcttcttca atacgatagt tttctctttc
      841 aagatacatc ttaagaaggc gtcgtatccg gtcctcatca tccacaacaa gcactctaac
      901 ttgttcactc ataagtactc atcccctaac tctcatttac ataaaacgat catttacatt
      961 caatcagata aatggaatct tccgtaccca catacgaaaa aaccatacaa ttgcctatac
     1021 caaatttcct acgatttaaa ttatacatgt ttttcacaaa acacgctatt agaaagtata
     1081 ttttgtatga aaagttactt tttattttta ccaaatcttg cttctgtttt taattgtttt
     1141 acttcatgat gtgataattc tctacgctca cctgcgttta aaccgcgtaa attcaagaac
     1201 gagtattctt cccttgataa tttttgcact tcaaaaccaa cagcctcaaa cattttacgg
     1261 acttgacgat ttctaccttc atgaatcgtg atttctacaa tagctttatc tttcgtttta
     1321 tcagaagaac gtacttttac ttttgctggg gctgttttgc gaccatcaat caccacacca
     1381 cgttctaact gacgaatcac ttcacgttca ggaatacctt tgattcgtgc gatatatgtt
     1441 ttggaaactt catttttcgg atgcattagt aagttagcga aatccccatc attggtcatt
     1501 aataataaac cagatgtatc ataatcaagt cgccctactg ggtataatct ttcaggaata
     1561 tctgcaaaat aatccgctac agttgtacga cctttatcat ctgttacagc cgaaaccgtt
     1621 cctcttggct tataaaaaag gaaatagcga tgttcttctt ttgttagttg aattccctca
     1681 acttcaattc gctccgtacc actaactttc acacctaatt ctgtgactac tttcccgttc
     1741 actgttactt taccttcttg aataagcttt tctgcttttc ttcttgaagt aatacctgca
     1801 tttgcaatca ctttttgtaa acgttccatt cttattcctc ctcctgttct ttactttggt
     1861 taaaccggtc aaaaaacagg tccatttcat tctgatctgg ttcatctgtc gctggatcag
     1921 caagttttgg taaatcctct agagaattaa gtccaaaagc atctaaaaac tcacttgtag
     1981 taacgtaaag ttttgctcgt ccagctccgt cgacacgacc tttatccgtt acaagtcctt
     2041 tggctactaa agttcgaatc ggtccatctg tttgaacgcc gcgaacctcg tctacttcca
     2101 ttcttgtaac tggttggcgg taagcaataa ttgctaatgt ctctaatgat gcttgcgata
     2161 aaacggtgtt gcttggaaca tcgactaatt tacgtaaaaa ttctgcatgc gcttttttcg
     2221 tagctaattg aaatgttcca gcaagctcca aaagaattaa acctctgtca gcacttccgt
     2281 tgtatcgatc acttaaaagt tctagtaaat tgagtgcttc aatgtgcgta atttccatga
     2341 cttcagttaa ttgttccgtt gaaagccccg catctcccgc cgcaaaaagc aaactctcta
     2401 atacgcctaa ttgttcttct ctgttcacga tatttcttcc cctttacctt gcacatataa
     2461 atccgcaaaa ctttccgctt gttctacttc gaccaatttt cgcttcatta attctaacaa
     2521 agccaaaaac gtaacgacaa gttgctcttt cgtttgttct tcaaataact cgtcaaatcg
     2581 caagcgatga ttgacttgta aatttaattt ttctaaaaca gaatccattc tttgatcaat
     2641 ggagatttct tgtgttgtaa ttcttgtatg gagaggttta tttaactttt tccgacgtag
     2701 cattttgtta aaagcactta gcatatcgtt taatgatacg tccagttctg ccaccttagt
     2761 accatcatca tattctgcta aatccattgg aggtttactg aaataaaagc tccgttccgc
     2821 ctctttttct tttaattctt ttgcggcttc tttgaatcgt ttgtattcca ttagtttttc
     2881 gactaaagca tcacgaggat cctcttcctc ttctagtgta tcataatcga tttccagttc
     2941 ttgctttgga agtagcatct tacttttaat tgctagtaaa gttgctgcca tcactaaata
     3001 ttcactcgcg acatctaatt ccatttcttg cattgtatga acaaattcca tgtattggtc
     3061 cgtaatttca gccataggga tgtcataaat atcgacttct agttgtccaa ttaaatgaag
     3121 aagtaagtca agcggtcctt caaacgcgtc cactttaaaa ttcatttcta ccatatctgt
     3181 cccgccctac tataatgaaa gatcattttg cactaaattt tcatatgttt cgcgggcaac
     3241 gattaattta tcgactccgt tttccacaaa aacaactggt ggtcttggga tacggttata
     3301 attacttgcc atcgcataac cataggctcc agtacaaaat accgccaaaa cttcaccggc
     3361 gtttgatttc ggtagtggta agtcccatat taacatatca ccagactcac agcattttcc
     3421 tgcgatagcc actgtttctt ctgcgacttt ctctgggttt gccgcaagaa cagcatcgta
     3481 atgcgcatca tataacgctg gacggatatt atcagacatg ccgccgtcaa ctgcgatata
     3541 attccgaatt cccggaactt ctttacgcga tccaacttta taaagtgttg tacctgcttc
     3601 accaacaagg gaacgacctg gctcaatcca aatttctgga atatcaatat cgttattatt
     3661 agccacatcc cgcacttcat ccataatttg gcgcacatat tcgctaggtt caagaggttc
     3721 atcttctgcc gtataacgga caccgaaacc gccaccaaga ttaagtactt tggaatcaaa
     3781 tcccagcgtt tggtgccatt caactaattt atccataata cgacgagccg ctaatttaaa
     3841 acccgttgtt tcaaaaattt gcgacccaat atgacagtgt aggccaatta aatcaaagga
     3901 cgcacttgca tgaagcactt gtttaatcgc tttttcagct tgtccatttg taagtccaaa
     3961 tccaaatttc gaatcatctt ggcctgttaa aatatagtca tgtgtatgag cttctatccc
     4021 cggtgtcacg cgaattaaaa ccgatgcctt ttcatttcgt tctattaata tatcttctaa
     4081 taaactaatt tcataataat tatcgataac aaaacaaccg atgccatagt caagcgccat
     4141 atgtatttct tctgcacttt tattatttcc gtgaaaatga attctctcag gaggaaaatt
     4201 tgctttaatt gctgtataaa gttctccgcc tgaaacaaca tctagtgata aaccttcttc
     4261 ggccatcagc tgataaatcg ctactgcaga aaatgctttg ctcgcataag ccacttgtgc
     4321 ttttacgcct agttcctcga atgttttctt aaatcctctt gctcggtcac ggattagcgc
     4381 tacatcataa acgtaaagtg gcgtaccata tttttcagta agctttaaag tgtccacccc
     4441 tccaatttcg agatgtcctt ctgcatttac attcattgtt ccaagccgtt caaacgtcac
     4501 gccaatccca cctttacatt atagattttt aaaagttctt ttatatagta gcacactaag
     4561 aagccgagcg acaataacta tctgaaaata ttatcaaata cgtaaaaaac tcagcccaaa
     4621 tctattatct ccttgcttca gaaaataaca aatttggact gagattagct accaattatt
     4681 ttaagaaatt ttagcaacaa tagcttttac atattgtaaa aacgtgctac gaacttgatc
     4741 tgttgtttca ataacttccg tatgagaaag tggttgatcc agaattccgg ctgccatatt
     4801 ggtaatacaa gaaataccta gcactcgtaa tccagcatgg ttcgcaatga ttacttccgg
     4861 tacagtggac atcccaactg catctgcacc aagtgtgcgc atcatttgaa tttcagcagg
     4921 tgtttcgtaa gttggaccgc taaatccagc ataaacacct tcacggatag tcaaattaag
     4981 ttcttgagca ataagtctag catccacacg tagagctaaa ttatacgcct cggacatatc
     5041 tgggaaacgc ggtccaaaat gctcatcatt tggtccaata agcgggttcg ttccagtaaa
     5101 gttaatgtga tcagaaatca acattaagtc tccagcagaa tataattcat ttacgccacc
     5161 tgccgcattc gtcacaacaa gcacttctac accaagctct ttcatcacac gaactgggaa
     5221 agtaacatct tgcattgaat agccttcata aaagtggaaa cgtccttgca ttgcaacaac
     5281 ttctttattt tccaactcac caaaaacaaa ttggccagca tgtccttcta ctgtcgaaac
     5341 aggaaaatgt gggatttcgc tataagaaag ttttgtcgga ttgtttactt catccgcaag
     5401 cacacctaaa cctgaaccaa gaatcaaacc aatttttggt gtaccattgt aactttctct
     5461 aattttcaca actgcttcat ttactttttc taaactcatt tttgttcctc ccttttccta
     5521 tttcaagtct tttaagaaac ttgttccata ttcaggcatt ttcacttcaa aattatccgc
     5581 aactgttgcg ccgagatcgg caaatgtttt gcgtaattct aattctgaac caccattttt
     5641 gaagcgtggt gagtatacaa gtaatggtac aaactcacgt gtgtggtctg tgccagagta
     5701 tgttgggtca tttccgtgat cagctgtaat aattaataga tcatcatctg ttagtttttc
     5761 cattacttct actaaacgac cgtcaaaatc aacgagcgca tctgcataac cttgtggatc
     5821 acgacgatgt ccgaagagtg catcaaagtc tactaaattc aagaaactca taccgttaaa
     5881 atctttatct aacacagcga taaattgatc cattccgtcc atatttgatt tcgtacggat
     5941 agattccgta acaccttcac catcaaaaat atcagaaatt ttaccaatgg caatcacgtc
     6001 tttaccgcca tcttttaaag catccattac agttggttta aatggtttta gcgcatagtc
     6061 atggcgattt ggcgttctaa caaacgcacc tggttcgccg acaaatggac gagcgataat
     6121 acgaccaagc atgtacgggt catctagtgt aattttacgg cagaattcac agatttcata
     6181 taattcttcc aaaggtacga catcttcatg tgctgcaatt tgtaaaactg agtcagctga
     6241 tgtgtaaaca ataagcgcac ctgttttcac atgctcttct ccaagttcag ccataatttc
     6301 tgttccgctc gctggtttat ttccaattac tttacgtcct gttttttctt caatttggtt
     6361 gattaaatca tccggaaatc catctgggaa tacgcggaaa ggcgtgtcaa tgtataggcc
     6421 catgatttcc cagtgacccg tcattgtatc tttaccgttc gaagcttctt gcatttttgt
     6481 atagtaagca agtggttttt ctgctttttt aattccgtct atttctcgaa tattcgatag
     6541 acctaatttg cccatttcag gcatttttag tccgccgacg tgtttggcaa tatgtccaaa
     6601 tgtatctaca tcaaaatcac caaatttagc agcatctggt gcttctccaa taccaactga
     6661 atccattaca actacatgta ctcgtttaaa tttatctggc atatttactc atccttttca
     6721 actatatttt ttaagcgcgc gggtggaatt gtttgtagac atctttcaac cgcagctttg
     6781 ttacgtgtgt ataaatttgt gtagtggaga tatcggcgtg accaaggagt tcttgaaccg
     6841 accttaaatc agccccattt tcaagtaaat gagtggcaaa tgaatgacgc aaggtgtgcg
     6901 gtgtaatcgg cttttcaatg cctgattctt tcgcaatacc ttttaaaatt ttccagaaac
     6961 cttgtcttgt gagtccttgg ccgtgatgat ttaaaaacac aaaatcattt cggtatttcg
     7021 gtctacgaag ttttggtctc gcttcctcta aatacttctc taacacagtt gttgccgttt
     7081 ttccaagcgg gataattctt tctttatctc ctttaccaat cgtttgaata aaacccatat
     7141 gaagatgtaa atcgtccatt ttcaggctga caagttccgt tacacgaagc cctgtcgcat
     7201 ataaaatttc catcattgct tggtccctta atccaagtgg tgtactcgta tcagaggaac
     7261 taagtaactt ctcgacatca tcaaggttca aaacttttgg taatccctgg gcttgtttcg
     7321 gcgtttcaat ttgaatcatt gggtcatgtg acattttccc atcgtgcatt aaataatgaa
     7381 agaaagatcg cagtgaagca atatagcgcg ccacacttct tgctgatttc ccttcttgtc
     7441 ttgcaaatgc cataaaacca actatatcgc ttcgttcaag tgtattcgga tctgttaatc
     7501 ccttcgctac atccatataa gaaacaaaat agcgtaaatc tcgttcataa gctttgattg
     7561 tattcgcgga taaacctctc tctac
//
LOCUS       DABQVC010000134         7553 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.134,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000134 DABQVC010000000
VERSION     DABQVC010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7553
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.134"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..653)
                     /locus_tag="IBJ56_002075"
     CDS             complement(<1..653)
                     /locus_tag="IBJ56_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3418325.1"
                     /translation="MAYTKEEKSWIFQDWANSAYSIMITTAILPIYFKGVAASAGIAD
                     STSTAYWGYANSIGTLLISLLAPILGTIADYQFFKKRFFGIFTAIGIGFTFLLVFIPT
                     DAWLLLLGFYVLSLIGFSGANIFYDAFLIDVTTNDRMDRVSSAGYAYGYLGSCIPFII
                     FIIFQATGILPISDVALVNIGFVMTALWWLFFTIPMWKNVHQIHYIPAVKRPVRTSF"
     gene            complement(672..1940)
                     /locus_tag="IBJ56_002076"
     CDS             complement(672..1940)
                     /locus_tag="IBJ56_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HAM3418326.1"
                     /translation="MEKHLFVISLDALGALDLKDTTDLPVLRELIKTGTHIQEVETIY
                     PSLTYPAHTSIITGHYPATHGIINNTKVQPEKDSPDWYWYKKAIQVPTLYDLAKEKGM
                     TTAAFLWPVAAKSGIDYNIAEIFPNRFWLTQMMVSLHASSPLFLIDMDRKFGHLRKGI
                     NQPDLDIFLTASVVDTIKAKRPRLLLTHLVDMDSMRHAHGVDSPEAKAALKRHDERLA
                     AIIQATKEAGIYENTVFAILGDHYQINVTHAIRLNVLFAKQGWMTVVDDKITEWDVYA
                     KSCDGSSYIYTKNNQHNQEIQHLLQNMAEIEEILPKEEIALRGADPNATFMVEGRAGF
                     YFMDDLDGPVYEKVTDEMLGKPGYYKAVHGYSPKKPDYKTTIIFNGPGIKKGDKISNA
                     HLVDEAPTFAHILDLQFPNTAGSVIEAIFE"
     gene            complement(2004..3041)
                     /locus_tag="IBJ56_002077"
     CDS             complement(2004..3041)
                     /locus_tag="IBJ56_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAM3418327.1"
                     /translation="MKELSSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSY
                     LITRLENFILRRISIYRQIIVLLLYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFL
                     TTDSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSL
                     GKEHLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALW
                     ILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHAL
                     ESYVLNPKLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEE
                     IEQPKDTISHT"
     gene            complement(3058..3954)
                     /gene="murB"
                     /locus_tag="IBJ56_002078"
     CDS             complement(3058..3954)
                     /gene="murB"
                     /locus_tag="IBJ56_002078"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HAM3418328.1"
                     /translation="MNNLQTQFPHIAIKLNEPLSKYTYTKTGGAADVFVMPKTIEETQ
                     EVVAYCHQNKIPLTILGNGSNLIIKDGGIRGVILHLDLLQTIERNNTQIIAMSGAKLI
                     DTAKFALDESLSGLEFACGIPGSIGGALHMNAGAYGGEISDVLEAATVLTQTGELKKL
                     KRSELKAAYRFSTIAEKNYIVLDATFSLALEEKNLIQAKMDELTAAREAKQPLEYPSC
                     GSVFKRPPGHFAGKLIQDSGLQGHIIGGAQVSLKHAGFIVNIGGATATDYMNLIAYVQ
                     QTVREKFDVELETEVKIIGEDK"
     gene            4170..5156
                     /locus_tag="IBJ56_002079"
     CDS             4170..5156
                     /locus_tag="IBJ56_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418329.1"
                     /translation="MIRFDNVSKKYSDDKTAAVNNVTLDIKDGEFFVFIGPSGCGKTT
                     TLKMINRLIPLTTGTIYINEKRISDYDIHELRWDIGYVLQQIALFPHMTIEENIAIVP
                     ELKKWSKEKIHDRITELLDSVGLDPESYRHRKPAELSGGEQQRVGVVRALAADPGIIL
                     MDEPFSALDPISRQRLQQDISALQKKIKKTIVFVTHDMQEALALGDRICVMQGGEIVQ
                     VATPQEIMKNPENDFVKDFLASGHAFNTPILEANFTVKDLIEADLFYSYQTSDGTLGI
                     SSAEPVENLVRRIAEEQSIPVTDEAGNFIGTVSNKHVMQFLARHLESSGELV"
     gene            5153..6667
                     /locus_tag="IBJ56_002080"
     CDS             5153..6667
                     /locus_tag="IBJ56_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HAM3418330.1"
                     /translation="MNTLIDTFTVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYL
                     TRHKRLAEPIIQVAAIFQTIPSLALLGLLIPLVGIGIVPAIIALVIYALLPILRNTYT
                     GIKEVDPALVEASRAMGMNKWKRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIG
                     AGGLGDLILLGIDRNDNSLILLGAIPAALLAILFDFLLRFLEKASFKSTIITISAGIL
                     LTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNMGKTSF
                     VFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFNMSYLKPMK
                     YNNTYALAVSPEFAKENNLEKISDLGPVSDQVKAGFTLEFKDRSDGYKGIQDKYGLTF
                     SNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLFPPYQGAPLMLT
                     KTLEKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKDQGIIK"
     gene            complement(6703..7533)
                     /locus_tag="IBJ56_002081"
     CDS             complement(6703..7533)
                     /locus_tag="IBJ56_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418331.1"
                     /translation="MTDKLLKQHKRLLEQQHKLPYTINLSGEVFTIIIYTKLSKVAGV
                     TVLNSQEEPATVKEAEAVVNRIQKYNFYFEYLGKRAHVIKERDSIIAEKIEQTQLILN
                     DNTIFGEKMQPTIDELNLAMEVYKQQQRKMDVYQEDITLLNQKIKMQGEILEEDWESA
                     ENLSIAFAKAAYAQSIYLEATRKNRKQLAKWFHLHQKELPTDKQKALSKMVSVLSDTN
                     AGLVFDQIISLRPLLEEGLMLDHEQSLTQRAAEFNKEFETHCRFYKPNINKVKNLIRQ
                     "
BASE COUNT         2392 a         1384 c         1355 g         2422 t
ORIGIN      
        1 ttaaaactag ttctgactgg acgtttcacc gctggaatat agtgaatttg atgaacgttt
       61 ttccacatgg gaatcgtgaa aaatagccac caaagcgccg tcatcacaaa accaatattg
      121 acgagtgcca catcactgat tggcaagata cctgtcgctt ggaaaataat aaagataata
      181 aaaggaatac aacttcctaa ataaccatac gcatatccgg cagatgacac tctatccatc
      241 cggtcgttcg ttgttacatc aattaaaaag gcatcataaa aaatatttgc gccagaaaag
      301 ccaattaatg agagtacata gaaccccagt aacaatagcc aggcatctgt gggtatgaaa
      361 actaataaga aagtaaagcc aatcccgatg gcagtaaaaa ttccgaaaaa tcgcttttta
      421 aaaaattgat aatctgcaat ggttccgagt atcggagcta ataatgaaat aagtaatgtt
      481 ccaatcgagt tcgcgtatcc ccagtacgcg gtcgatgtac tgtcagcaat cccggcactc
      541 gctgctaccc ctttaaaata aattggtaaa atcgcagttg ttatcatgat tgagtaggcg
      601 gaattcgccc aatcttgaaa aatccaactt ttctcctctt ttgtatatgc caagtgtgtt
      661 tctccccttt tctattcaaa tatcgcttct atgacagagc cagcagtatt tggaaattgt
      721 aagtccaaaa tgtgtgcaaa tgtaggcgct tcgtcaacta aatgagcatt gctgattttg
      781 tctccttttt taatgccagg tccattaaaa ataatcgtgg ttttgtaatc tggcttttta
      841 ggagaataac cgtgaactgc tttatagtaa cctggttttc caagcatttc atcagtgact
      901 ttctcgtaaa ccggtccatc taaatcatcc ataaaataaa aaccagccct cccttcaacc
      961 ataaaagtag cattaggatc agcaccacga agtgctattt cttctttcgg caaaatttct
     1021 tctatttcag ccatgttttg aagtaaatgc tggatttctt gattatgttg attgtttttt
     1081 gtgtaaatat aactggaacc gtcacaactt ttagcgtaga catcccattc cgtaatctta
     1141 tcgtccacta cggtcatcca gccctgtttg gcaaaaagga catttaggcg tatggcgtgt
     1201 gttacattaa tttgataatg atcacctaga atagcaaaga cagtattttc ataaatgcca
     1261 gcttcttttg tagcttggat aatcgcagct aaccgctcat cgtgtcgttt taaggccgct
     1321 tttgcttcag gggaatctac tccgtgcgca tgtcgcatac tatccatatc aaccaaatgt
     1381 gttaaaagta atcttggcct tttcgcttta attgtatcaa ctacgctagc tgtcaaaaat
     1441 atatctaagt ctggttggtt gattcccttt cgcagatgac caaattttcg gtccatatct
     1501 attaaaaata atggtgagct agcatgtaat gacaccatca tttgcgttaa ccaaaagcga
     1561 tttggaaaaa tttcagcaat attataatca attccacttt ttgctgcaac cggccataaa
     1621 aaagcagcgg tcgtcatccc tttctctttg gctaaatcat aaagtgttgg tacttgaatg
     1681 gcttttttat accaatacca atcaggagaa tctttttcag gttgaacttt tgtgttatta
     1741 ataatcccat gagttgcggg ataatgcccc gtgataatac ttgtgtgcgc tggatatgtc
     1801 agtgatggat aaatggtttc aacttcttgg atgtgagttc ctgtcttaat taattcccgt
     1861 aaaacgggca aatctgtcgt atcttttaaa tcaagtgctc caagtgcgtc taatgaaatc
     1921 acaaaaagat gtttttccat tattttctcc cccttcaaaa aaacagggat tttccagaaa
     1981 atctggaaga acccccgtgt gaattacgta tgactgattg tgtcctttgg ctgttcgatt
     2041 tcttcttgat tcgtaacgcc gagcacatct aagaagaaca tcacaactgg aataccaacg
     2101 attaatcccc aaataccgaa gaaatgctct ccgaaaataa gaataatgaa agtataaaaa
     2161 actggtaaat ttgttttcgc tgacataagt tttggattaa ggacataaga ttcgagtgca
     2221 tggataataa taacaacgac taaaatgtag aaaatgtatt ccacgccgcc gatagaataa
     2281 ccaatgatag ttaacgggac aagagaaata atcacccctg ccactggaat caaaccaagc
     2341 aaaaacacca ttatggataa agtcatcaat tgcgggaaac ctaaaatcca aagtgctatc
     2401 gtcgttaaaa tggcattcac aagcgcaatg ataaattgtg cttcaataac tttaccaaaa
     2461 gtagcaacaa atttggatcc aaagaacttc acttcttcat agataaaacc aattttacta
     2521 gtagaaaatt gattcgtgaa tgaaactaaa tgttcttttc ctagtgagaa aaatagactt
     2581 aacattagtg cgataaagac gttcatcaat acagttccca cattagttaa ataagttaat
     2641 atcattgaaa caccctgttc tgtgtatttc ataatatcaa attgattcgc taaactaaca
     2701 atgtaattaa tgaagtcatt gttgctatct gtcgttaaga aagtatttcc gaatttcact
     2761 agttgattta tttgatccgc taagacagga atgtacttaa caaatacgaa gatgataact
     2821 gcggcgatta aaacataaag taacaacaca ataatttgcc gataaatgga gattctccgt
     2881 aaaataaaat tctctaaacg tgtaataagg taagaaaaaa tgaatgttag taaaataata
     2941 ttcatttggc ttcttaataa gtataaaacg aaggcaatta atataaatac gccaactcgc
     3001 cgcacactac gattttgtaa aaatgaacta agctctttca aaaatggatg ccctcctcta
     3061 tttatcttcg cctatgattt taacttctgt ttctaactct acatcaaatt tctcgcgaac
     3121 cgtttgttgg acgtaagcaa ttaaattcat gtagtcagtc gcagttgccc caccgatatt
     3181 aacgataaat ccagcatgtt ttaaagaaac ttgcgcgccg ccaataatat ggccttgcaa
     3241 gccactatct tgaattaatt tacccgcaaa gtgacctggt ggacgtttga atacactacc
     3301 acaagatgga tactctaatg gttgtttagc ttcacgtgct gcagtaagtt catccatttt
     3361 tgcttgaatt aggttttttt cttctaaggc caaagaaaaa gtagcatcta atacgatgta
     3421 atttttttct gcaatagtac taaagcgata agctgctttt agttctgaac gttttagttt
     3481 ttttaattca cctgtttgtg tcagcacggt tgcagcttct aaaacatcac taatttcgcc
     3541 tccgtatgct cctgcattca tatgtagtgc tcccccaata gatccgggaa taccacaagc
     3601 aaattcaagt ccgcttaagc tttcatctaa agcgaatttt gctgtatcaa tgagtttggc
     3661 accactcatg gcgataattt gggtattgtt tctttcaatg gtttgtagta aatcaagatg
     3721 taaaataacg ccgcgaattc cgccgtcttt aatgattaga ttggaaccat ttccgagaat
     3781 agtaagaggg attttatttt ggtgacagta ggccaccact tcttgcgtct cttctattgt
     3841 ttttggcata acgaatacgt ctgccgcgcc gcctgttttt gtataggtat acttagacaa
     3901 cggttcattt aatttaatcg ctatatgcgg aaactgtgtt tgtaagttat tcattattta
     3961 tttcaaacct ttcatggttg tagtttaaaa atcacttcct ttattttatc atggaacctc
     4021 tcttttacaa agaattccat agtttttttc ttaaattagg aatatttagg gatgatttag
     4081 ggtaattgga tgatatgttc ttgagtaata taattaaaaa tgttatgatg tagaacatac
     4141 gtttgattaa aaaggaaagg gatgaaaaaa tgattcgttt tgataatgta tccaaaaaat
     4201 acagcgatga taaaacagca gcagtaaata atgtaacttt ggacataaaa gacggcgagt
     4261 tctttgtttt catcggaccg agtggttgcg ggaaaacaac aacactaaaa atgattaatc
     4321 gcttgattcc actgacaact ggaaccattt atattaatga aaagcgaatt agtgattatg
     4381 atattcatga acttcgctgg gatatcggct atgttttaca acaaattgcg ctctttcctc
     4441 acatgactat tgaagaaaat atcgctatcg ttccggaatt aaaaaaatgg agcaaggaga
     4501 aaattcatga ccggattacg gaattattag atagtgttgg cttggatcct gaaagttatc
     4561 gtcatcgcaa accagctgaa ttatctggtg gtgaacagca acgggttggt gttgttcggg
     4621 cccttgcagc agatcctgga attattctga tggatgaacc ttttagtgca cttgatccga
     4681 tttctcgcca acgtttacag caagatattt ccgcacttca aaagaaaatc aagaaaacta
     4741 tcgtatttgt tacccatgat atgcaagagg ctttagcgct tggtgacaga atttgcgtaa
     4801 tgcaaggcgg tgaaattgtc caagtagcaa caccacaaga aattatgaaa aatccagaaa
     4861 atgacttcgt taaagatttc ttagcatctg gacatgcttt caatacgcca attttagaag
     4921 caaactttac ggtgaaggac ttaatagaag ctgacctgtt ttattcgtat caaactagtg
     4981 atggcacact tggaatttca tcagcggagc ctgtcgaaaa ccttgttcgg cgaatcgcgg
     5041 aagaacagtc aattcctgtc acagacgaag caggtaattt tatcggtaca gtttcaaata
     5101 aacatgtgat gcaattctta gcgcgtcatc tggaaagttc aggtgagctt gtatgaatac
     5161 tcttatagat acatttactg tccgtaaaga tgaactattc acagctttag tacaacatat
     5221 tcaaatttcc tttgtctctc tttttatagc ggtgttaatt gccttacctc ttgggattta
     5281 tttaactaga cataagcgtc tcgctgaacc aattattcaa gtagccgcta tttttcaaac
     5341 aattccttct ctggcactac ttggtttgtt aattccgctc gttggtattg ggatagttcc
     5401 agcgattatt gcgcttgtta tttacgccct cttacctatt ttaaggaata catatactgg
     5461 gataaaagaa gtcgacccag cccttgttga agcctcacgc gcaatgggaa tgaacaaatg
     5521 gaaaagatta tacaaagtac aacttcctct tgctatgcca gtaattatgg ctggtattcg
     5581 tacagcgatg gtattaatca tcggtacagc gacacttgct gccttaattg gtgcaggtgg
     5641 actcggggac ttgattctac tagggattga ccgcaatgat aatagtttaa ttctattagg
     5701 tgcaattcca gcagcgttac tagcgatttt gtttgatttc ttactacgtt tccttgaaaa
     5761 agcatctttt aaaagcacaa ttattacgat ttcagcaggt atcttattaa ctgccgcaat
     5821 tatcgtcgtt ccttattttg cgtctgataa aaaagaaatt acgattgcag gtaaattagg
     5881 tgcagaacca gaaattttga ttaatatgta caaactagtt attgaggacg aaacagattt
     5941 aaaagttaat gtgaagccga atatgggtaa aacgagcttc gtttttaatg cattaaaatc
     6001 aggtgatatt gatatttatc ctgaatttac aggaacagtg ctagagacat tcttaaaaga
     6061 aaatgcaaaa acacatgatc ctgaagaagt gtatacgcaa gcacgtgatg gtttggcaaa
     6121 agattttaat atgtcttatt taaaaccgat gaaatataat aacacctatg ctcttgcggt
     6181 ttcaccagaa tttgcaaaag aaaataattt agaaaaaata tctgatcttg gcccagtatc
     6241 tgaccaagta aaagctggat tcacactgga gtttaaagac cgttcggatg gttataaagg
     6301 cattcaagat aaatatggtc tcacattctc taacttgaaa acaatggagc caaaactgcg
     6361 atataatgca attaaatctg gagacatcaa tttactagat gcttactcaa cagatagtga
     6421 actcgcccaa tataaattaa aagtcctaga agacgatcag cagctcttcc ctccttatca
     6481 aggtgcaccg cttatgctga caaaaacatt agaaaaatac ccagaactga aaaaaccatt
     6541 aaataaacta gctgggaaaa ttacagatga tgaaatgcgt aaaatgaatt atgaagtgaa
     6601 tgtaaatggc aaatcagctt atacagttgc caaagactat ttgaaagatc aaggtattat
     6661 taaataaaaa agcgaagtgg tttttacgcc acttcgcttt ttttattgtc taattaagtt
     6721 tttgacttta ttaatgtttg gtttgtaaaa acgacaatgt gtttcaaatt ctttgttgaa
     6781 ttcagcagct ctttgggtta gtgattgctc gtgatcaagc atcaagcctt cttcaagtag
     6841 tggtctaagt gaaataattt gatcgaaaac aagaccggca tttgtgtcac ttagaacaga
     6901 taccatttta cttaacgctt tttgtttgtc agtaggtaat tctttttgat gaagatggaa
     6961 ccattttgct aattgtttgc gattttttcg ggttgcttct aaataaatac tttgcgcata
     7021 agctgcttta gcaaatgcaa tcgataaatt ttcagcggat tcccagtctt cttctagaat
     7081 ttcaccttgc attttgattt tttgattgag tagagtaata tcttcttgat aaacatccat
     7141 tttgcgttgt tgttgcttat aaacctccat cgctaaatta agttcatcaa tagttggctg
     7201 cattttttca ccaaaaatag tattatcatt taaaatcaat tgtgtttgct ctattttttc
     7261 agcaataatg ctatcgcgtt ctttgattac atgtgcgcgt ttgcctaagt attcaaaata
     7321 gaaattatac ttttgaatgc gattaactac tgcttctgct tctttcactg tggctggttc
     7381 ttcttgtgaa tttaatactg tcacaccagc tactttactt aatttagtat aaataataat
     7441 tgtgaaaact tctccgctca aattgattgt gtacggtagt ttatgttgct gttctaaaag
     7501 ccttttatgt tgttttaata gtttatccgt catcgttaat caacaccttt act
//
LOCUS       DABQVC010000135         7537 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.135,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000135 DABQVC010000000
VERSION     DABQVC010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7537
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.135"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..255)
                     /locus_tag="IBJ56_002082"
     CDS             complement(<1..255)
                     /locus_tag="IBJ56_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3116 domain-containing protein"
                     /protein_id="HAM3418332.1"
                     /translation="MEFEDEKLLREVLLFAGSVDTKINDMSLEVIDFGNLRDYTKNEV
                     LLTLYWLEENGFLTRNNNIAEKRYTLTLKGELLYDRFSQIE"
     gene            complement(554..2359)
                     /gene="pepF"
                     /locus_tag="IBJ56_002083"
     CDS             complement(554..2359)
                     /gene="pepF"
                     /locus_tag="IBJ56_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HAM3418333.1"
                     /translation="MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEE
                     SEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYAHLKMDQDTANAKYQGLHSRAGS
                     LVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
                     LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRRE
                     AFLGVYSVYEGLKNTLASTLNGQVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLL
                     KSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFTYEEAKELVLEALKP
                     LGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTSPYILLNWQDNINNVYTLAH
                     ELGHSVHSYYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNH
                     YLDGFKGTVFRQTQFAEFEHAIHQADQEGVALTADYLTETYFDINKKYYGEAMVYDAE
                     IGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAGSSDYPI
                     DVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK"
     gene            complement(2432..3547)
                     /locus_tag="IBJ56_002084"
     CDS             complement(2432..3547)
                     /locus_tag="IBJ56_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
                     /protein_id="HAM3418334.1"
                     /translation="MIIIFTARNNMGETFTITKMNVERIKQEERLFCKSCASPVMIKA
                     GQIKIPHFAHEKTMKCAFASEGESEEHLAAKKQIMAWYCYQSIPVEVESYFPEIKRQA
                     DIFVNGKAVIEFQRSSISISEMIQRTMDYLSIGLEVHWILGQVVKKEKGRICLSAFQQ
                     AFIQSDKKLGYHFWHYSTEREICTLYYHLTFEKGNRFFASEMKFSMKAPFSEWKKKLA
                     RIITRHAYVKRDRELERQKICFYYAKFKKHGQFMQKLFNAGYYLHYLPKEIGVDLEEQ
                     FLVITPAVEWQFDLWEKFFKGLEKGDTFSECCFFESFQSVVTQILTIWLSPNESLKLG
                     KSYLSYLIGEGVLSTIPDNRYRVKRKMVFTNTRAAHI"
     gene            complement(3673..4326)
                     /gene="mecA"
                     /locus_tag="IBJ56_002085"
     CDS             complement(3673..4326)
                     /gene="mecA"
                     /locus_tag="IBJ56_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HAM3418335.1"
                     /translation="MEIERINEDTIKFYISYLDLEERGFNQEDVWYDREKSEELFWDM
                     MDELKYEEEFSPEGPLWIQVQALKHGLEVFVTKATIGGKGEDGFDVTLSSPDELAEEK
                     IEKLLEENFNPVKKEALGDDDTLEFILEFRDFEDAISLSRATGLENLVTKLYSYQGKY
                     YLNVEFPENKYDESNIDNAVSILLEYGLESNLTGYMLAEYGKVIFDVPALKQIRKHF"
     gene            complement(4558..4953)
                     /gene="spxA"
                     /locus_tag="IBJ56_002086"
     CDS             complement(4558..4953)
                     /gene="spxA"
                     /locus_tag="IBJ56_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007474633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HAM3418336.1"
                     /translation="MVTLYTSPSCTSCRKARAWLEEHDIPYKERNIFSEPLSLDEIKE
                     ILRMTEDGTDEIISTRSKTFQKLNVDLDSLPLQQLFELIQKNPGLLRRPIIIDEKRLQ
                     VGYNEDEIRRFLPRRVRTYQLREAQKMVN"
     gene            complement(5273..6241)
                     /locus_tag="IBJ56_002087"
     CDS             complement(5273..6241)
                     /locus_tag="IBJ56_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3418337.1"
                     /translation="MTEQREKLLEIHNLKQYFNKGTASEVRAVDDISFDIYKGETLGL
                     VGESGCGKSTTGRTIIRLYDATGGEVIYNGKDVHARKSRKEMLEFRRKMQMIFQDPYA
                     SLNPRMKVKDIIAEGIRIHGLAKTPEETNKQVYDLLETVGLSKEHAGRYPHEFSGGQR
                     QRIGIARALAVQPEFIIADEPISALDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMV
                     KYISDRIGVMYFGKLVELAPANDLYHAPLHPYTESLLSAIPLPDPNYERTRVRKTYDP
                     TSHNYKDGDEIKMREIAPGHFVYCSEEEEVMYKEKHAKLTAEAAAK"
     gene            complement(6238..7314)
                     /locus_tag="IBJ56_002088"
     CDS             complement(6238..7314)
                     /locus_tag="IBJ56_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418338.1"
                     /translation="MEKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESG
                     SGKSVTTKSIMRLLPEGNSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMT
                     SLNPTMTIGKQISEPLIKHQKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGM
                     RQRVVIAISLACNPQILIADEPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGV
                     VANVADRVAVMYGGKIVEIGTVDEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTP
                     PDLLHPPKGDAFAARNKYAMQIDLEEEPPLFKVSDTHYAATWLLHPDAPEVTPPDAVL
                     RRQEQFAELHPGMQAVHAKGVEVE"
     gene            complement(7332..>7537)
                     /locus_tag="IBJ56_002089"
     CDS             complement(7332..>7537)
                     /locus_tag="IBJ56_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAM3418339.1"
                     /translation="EAFLSFIGLGLPAPAASLGVLVNDGYKTLQVLPYMILYPCIVLC
                     IIMIAFNLIADGLRDAFDPKMRD"
BASE COUNT         2329 a         1528 c         1149 g         2531 t
ORIGIN      
        1 ttctatttga gaaaagcgat catatagtaa ttcccctttt aaagttaacg tatatctttt
       61 ttctgcaata ttattatttc ttgttaaaaa gccattctct tccaaccaat aaagcgttag
      121 tagtacttca ttttttgtat agtcccgcag atttccaaaa tcaatcactt caagtgacat
      181 atcattaatc ttcgtatcta cacttcccgc aaaaagaagt acttctcgta gtaatttttc
      241 atcttcaaat tccatcttta atcctccttt aattctgagt tagtatcgta ataacgtaaa
      301 aagccgtagc aaaatgccac ggcttcttac agcgcaatca aaaggagaaa ttcacacaat
      361 caaataaagg gggtatttgt ttgtgattta tttcacggtt ataatatacc atataaacgc
      421 ttataattca atagttcaca tacctatttt tatttgtcta tcctatgaat attggcatca
      481 ctcaaacata cgaaaaaaaa gactcgcagc cattatcgct acgatgtctt tttttagcaa
      541 atttcacaat atattattta actaattttt ctagttcatc taatctttgt tcaaatactt
      601 ttagtgcatc atccaccgga ttaggagttg ccatatcaac tcctgctttt ttcaacacat
      661 cgataggata atccgaactt cccgctttca agaaatcaat ataggcagtc accgcttctt
      721 ggccttctgt taaaatcttc gcactcaatg cagatgctgc agaaaaacca gtcgcatatt
      781 ggaacacata ataattcata taaaaatgcg gaatacgaga ccattcataa ccgatttcag
      841 catcataaac catcgcttct ccgtaatatt tcttgttaat atcaaaatat gtttcggtca
      901 agtaatccgc agtcagcgcc actccttctt gatccgcttg atgaatagca tgttcaaatt
      961 cagcaaattg ggtttgacgg aatacagtac ccttgaatcc atccaaatag tgattcaaca
     1021 agtaagcacg aacttttgga tcatcatatt tcttaagaag ataatcagtt agtaaatttt
     1081 catttgttgt cgaagcaacc tccgctaaga aaatcgaata atcaccataa acaaatggtt
     1141 ggttttttct tgtataataa ctatgcacac tatgccctaa ttcatgcgca agtgtgtaaa
     1201 cattgttaat attatcctgc caattgagta aaatataagg actcgtacta tacgaaccag
     1261 aagaataggc tccactacgt tttcctttat tttccatcac atcaatccaa cgactatcaa
     1321 atgcttcttt taaaattgct tgatattcat caccaagcgg tttaagcgct tcaagcacaa
     1381 gttctttcgc ttcttcataa gtaaactcca aattaacatc atcagaaagt ggcgtataaa
     1441 gatcatacat atgcaattcc tctaagccaa gtaattcttt acgtaacttc acataacgat
     1501 gaagcaaatc tgcattcgca tttactgatt ttaacaagga atcatatact gtttcaggaa
     1561 tatggttccc agaaagagcc gcttcacgag ctgacgtgta gccacgagtg gaagcataaa
     1621 aattagactt cttcacttgt ccattcaaag tagaggctaa ggtgtttttt aggccttcat
     1681 aaacagaata cacaccaaga aacgcttcac gacgaactcg cggatcatta ctttccaaca
     1741 atttcccgaa acgaccatga gtaatttcga tatcttcccc gttctcatct ttaatggttg
     1801 gaaacttcat atctgcatta ttcaaggtat taaaagtatt agacgaactg ccaagcactt
     1861 cacctgcgtt agctagtaaa gcctcctctt tctcacttaa aatatacggt cggcttaaat
     1921 ttaactcttc tagtaaatgc gcatataatt gtaaatcttt gttctcattt aaaaattgtt
     1981 ttaaaacgct ttcgtccata gctaaaattt caggatcata ataagacagt gcagacatta
     2041 gctttgtaac taggcttcct gcgcgactat gtaaaccttg atatttcgca ttagctgtat
     2101 cttggtccat tttcaaatgc gcatatacat ataagttact aattaaatca tatgcattat
     2161 ctcgaaattg aagtgcttca tatagtgtct ggctgctttc cgataaacgc cctttaaatt
     2221 gctcgctttc ttctgtgatt ttttgcaaat ctgtaaatgc ttgttcccaa gcttcatcgt
     2281 ttggataaat cgtagttaaa tcccaagtta gattttctgg tacttcttct cttaaaggta
     2341 atgcatttgt tttactcaat attaaaaccc ccaaccatag tcattttgtt tttattatga
     2401 gccaaaataa ctaaaaaagc aaaacagatg attatatatg tgctgctcga gtattagtaa
     2461 aaaccatttt ccgtttcaca cgatatcgat tatctggtat ggtagataac accccttcac
     2521 caatcaaata agaaagatat gattttccta acttcaaact ttcatttgga gaaagccaga
     2581 tagttaaaat ttgggttaca actgattgaa aactctcaaa aaagcagcat tcgctaaaag
     2641 tatctccttt ctccagacct ttaaaaaact tttcccacaa atcaaattgc cattcaacag
     2701 caggtgtgat aactaaaaat tgttcttcta aatccacacc tatctctttc ggtaaataat
     2761 gcaaataata accggcatta aataattttt gcataaattg tccatgtttt ttaaatttag
     2821 cataataaaa acaaattttt tgtctttcga gttctctatc tcgttttaca taggcatggc
     2881 gtgtaataat tctagctaac ttcttcttcc attcactaaa aggtgccttc atagaaaatt
     2941 tcatttcact tgcgaaaaaa cgatttcctt tttcaaatgt tagatgataa taaagtgtac
     3001 aaatctctcg ctcagtagaa tagtgccaaa aatgataacc caatttctta tcagattgaa
     3061 taaaggcttg ctggaatgca gaaagacaaa tacgtccctt ctccttctta accacttgcc
     3121 cgagtatcca gtgaacttct aatccaattg ataagtagtc cattgttcgt tgaatcattt
     3181 cactaattga aatagaagaa cgttgaaatt caattactgc cttcccattc acaaaaatat
     3241 ctgcttgtcg ttttatttct ggaaaataac tttccacttc cacaggaata ctttgatagc
     3301 aataccaggc catgatttgt tttttagctg ctaaatgttc ctcgctctcc ccttcagaag
     3361 caaatgcaca cttcattgtc ttctcgtggg caaagtgcgg tatttttatc tgtcctgctt
     3421 ttatcattac tgggcttgca caagacttac aaaacagtct ttcttcttgc ttgattcgtt
     3481 ccacattcat cttagtaata gtaaaagttt ctcccatgtt atttctggct gtaaaaataa
     3541 ttatcactct cctattagct ctttaatatt attattcgcc aaggagcatc caaattcctt
     3601 tcttattttt aaaatcacaa aaaagccccg tttggctatt tttcagcaca aacggggctt
     3661 taaaatacta ttttagaaat gttttctaat ttgctttaat gcaggaacgt caaagattac
     3721 ttttccgtac tcagctagca tataaccagt taaattcgac tctaaaccgt actcaagcaa
     3781 aatactaacg gcattgtcaa tgttagattc atcatattta ttctcaggaa attctacatt
     3841 caaataatac tttccttgat acgagtatag cttagttact aaattttcta gtccagtcgc
     3901 tcgtgaaaga gaaatagcat cttcaaaatc acggaactct aaaataaact ctagtgtatc
     3961 atcgtctcca agtgcttctt tcttcactgg attaaagttt tcttcgagta gtttttcgat
     4021 tttttcttct gcaagctcat ctggcgagct aagcgtgaca tcgaagccat cttcgccttt
     4081 tccaccaatt gtagcttttg ttacgaatac ttctaagcca tgttttaagg cttggacttg
     4141 tatccagagc ggaccttccg gagagaactc ttcttcatat ttcagctcat ccatcatatc
     4201 ccagaaaagc tcttcacttt tctcgcgatc ataccaaaca tcttcttggt taaaacctcg
     4261 ctcttccaaa tccagataag agatataaaa cttgattgta tcctcattaa ttcgttcaat
     4321 ttccatcgtc acactctccc ttccttctta gtcattgaca atgaagggta aaacttaatt
     4381 ggttaaattc attgtagctc atattaggaa atagtaccac catttttcct tcgatttgct
     4441 tggtggaatc ttatcttagc tgaaaagcga aaaaaattca agaacattta cttaaactac
     4501 aaaaaaagcg ccaagaatcc aattgaatgg aatccttggc aaccactttt atcaatctta
     4561 gttaaccatt ttttgcgctt cacgtagttg atacgtacgt acacggcgcg gtaagaaacg
     4621 gcgaatttca tcttcattgt acccaacttg caaacgtttt tcatcaataa tgataggacg
     4681 tcttaataag ccaggatttt tctggattaa ttcaaatagt tgttgcaaag gaagactatc
     4741 taaatccacg ttcagttttt ggaacgtttt tgaacgagtg gaaataattt catctgtacc
     4801 atcctcagtc atacgaagaa tttctttaat ttcatccaaa ctaagtggct cagaaaaaat
     4861 gtttctttcc ttataaggga tatcatgttc ttccaaccat gcacgagctt ttcggcaaga
     4921 tgtgcaacta ggtgaagtgt ataacgttac cattagacat tcacactcct tatcgggtat
     4981 tgtttcattc atataacgaa attctagcaa tatctctatt tggaaaattc attaaagaac
     5041 ttacacttca ttatacacta attttgtgaa attccatata ctattttcaa aaattttctt
     5101 tccaaatatg taaaaccatt gttagcaagc cgttatgtat atgatacccc tactataact
     5161 tgtttaaact aaaatcacat gaaaaaaata gcttttttat gagaatttca tgagaatttt
     5221 aattttgtaa aaaaaacatc aatcaaattt tactctgatt gatgttttcc tattatttcg
     5281 cagcagcttc agcagttagc ttagcatgct tttctttata cataacttct tcttcttctg
     5341 aacaataaac aaaatgtcca ggagcaattt cgcgcatttt aatttcatcg ccatctttat
     5401 agttatgaga cgttgggtca tatgttttac gcacacgagt acgttcataa tttggatctg
     5461 gcaaaggaat cgcggataaa agtgattctg tataagggtg tagcggcgca tgatacaaat
     5521 catttgctgg cgctaactct actaatttac cgaagtacat tacgccaata cgatcactaa
     5581 tgtatttaac cattgataaa tcgtgggcaa tgaataggta agttagattt ttttctttct
     5641 gcaattgacg taataagttt actacttgcg cttggataga tacatctagt gcggaaatag
     5701 gctcatcggc aataatgaat tctggttgaa cagcaagcgc acgagcgata ccaatacgtt
     5761 gacgttgacc gccggaaaac tcatgtggat aacggccagc atgttcttta cttaatccaa
     5821 ctgtttctaa caaatcgtat acttgtttat tcgtttcttc aggtgtttta gcaaggccat
     5881 gaatacgaat accttcagca atgatatctt taactttcat acgcggattt aaagatgcgt
     5941 atggatcttg gaaaatcatt tgcattttac gacggaattc aagcatttct ttacggcttt
     6001 tacgtgcgtg cacatcttta ccgttataaa taacttctcc gccagttgca tcgtataaac
     6061 gaatgatagt acgcccagtt gtagatttac cacaaccaga ttcacctact aaaccaagtg
     6121 tttcaccttt ataaatatca aaagaaatat catcaaccgc gcgtacttca cttgcagtac
     6181 ctttgttgaa gtattgtttt agattatgaa tctctaataa tttttctctt tgttcagtca
     6241 ttctacttct acccctttcg catggacagc ttgcatgcca ggatgaagtt ccgcaaactg
     6301 ctcttggcga cgtaatacag catcaggtgg cgttacttct ggtgcatcag gatgaagcaa
     6361 ccatgtagcc gcataatgtg tatcagacac cttaaatagt ggtggctctt cttcaaggtc
     6421 aatttgcatt gcgtatttat tacgcgcagc aaatgcgtcc ccttttggag gatgaagtaa
     6481 atcaggtggc gtaccaggaa taacaaataa ttcttcatca tctgtatcca aagtaggcat
     6541 agagctaatt agtccccatg tataaggatg ttgtggatta tagaaaattt catcaactgt
     6601 tccgatttca acaattttac caccgtacat aacagctaca cggtctgcaa cgtttgctac
     6661 aacaccaagg tcatgggtaa taaagataat cgacgtatca atttttttct gtaaatcctt
     6721 cattaaatct aaaatttgcg cttggatagt tacatctagc gctgttgttg gctcatctgc
     6781 aataagaatt tgtgggttac atgcaagtga aatcgcaata acaacccgtt gacgcatccc
     6841 acctgaaaat tggtgaggat attgtttaat tctttcttct gcgtttgcaa taccaactaa
     6901 ttgaagtaaa cgaagtgctg ttttatgtgc ttcatgttta ctgatttttt ggtgcttaat
     6961 aagtggttca gaaatttgtt taccaattgt catcgtagga tttaatgatg tcattggatc
     7021 ttggaaaatc atagctatat ctttcccacg aattttttgc atttgttttt cgtgagcttt
     7081 agcgatatcc attccgttaa ataaaatttg gccactttta atttctgagt taccttctgg
     7141 aagtaaacgc ataatcgatt ttgtcgttac tgatttacca gaaccagatt cgccaacaat
     7201 cgctaaggtt tcccctttat ataagtcaaa attaactcca cgaatcgcct ttacttcacc
     7261 ggcatatgtg tggaatgaaa tatttaaatc tttaacttct aatagctttt ccatttttcc
     7321 tcacctctct tttaatcgcg cattttagga tcgaaggcat cacgcaagcc atctgcaatt
     7381 aagttaaatg caatcataat gatacaaagt acaatacatg gatacagaat catatacggt
     7441 aatacttgta atgttttata tccatcattt accaagacac caagagacgc tgctggcgct
     7501 ggaagaccaa gcccaataaa gcttaagaag gcttcaa
//
LOCUS       DABQVC010000136         7525 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.136,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000136 DABQVC010000000
VERSION     DABQVC010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7525
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.136"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            120..2264
                     /locus_tag="IBJ56_002090"
     CDS             120..2264
                     /locus_tag="IBJ56_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HAM3418340.1"
                     /translation="MDKFKQQLIKYLKLFFGFIGKWLSKGWQKFRRFWKNKHIGKIFL
                     LAGLVFLLSFIIYLVIVAKSADIDALKKGLESATIIYDKDGDKAGELSSTDATFVSID
                     KISKNLQNAVVSIEDRKFYEHKGFDLKGIARAGVNLVTSGGISGGGSTITQQLAKNAL
                     LTQEQTFTRKAKEIFMAREIEKTYSKDEIMEMYLNRSYFGNGEWGVENASLKYFGKSA
                     ADLNIPEAATIAGLLQAPSAYDPYQHIDKATNRRNMVLNAMVETGTISKAEGDKYKAT
                     KIVLNDQSKDPLANKYPWYVDAVINEAVNEADITQDEIMQKGYKIYTELDQNYQTSLE
                     NVYNNDGLFPSNANDGTLVQSGAVLMDPATGGIRALVGGRGEHVFRGFNRATQMKAQP
                     GSTMKPLAVYTPALQSGYDVDSMLKDEKITYKGNYTPTNVGGVYSGEVPMYKAVANSI
                     NAPAVWLLDQIGIDKGVKSVEKFGITVPEKDRTLGLALGGMSKGASPVEMATAYATFA
                     NNGAKPESHIITKIVDPSGNTVYENVPKTKQIISETVSNEMTSMLLDVINTGTGQSAA
                     VSGHEMAGKTGSTQVPFDDTSGTKDQWFVGYTPNLVGAVWMGYDKTDKEHYLTTTSSA
                     GVSSLAHYVMNSGLQYQKSADFSTKSAAQETAAKKEEEEKEKNSGSDFWSGVKEKADE
                     AGETIKKGADKVKEFGGKVSDGIGNLIDSIGN"
     gene            2374..2571
                     /locus_tag="IBJ56_002091"
     CDS             2374..2571
                     /locus_tag="IBJ56_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="negative regulator of sigma-Y activity"
                     /protein_id="HAM3418341.1"
                     /translation="MDKTQIALIIPVILLYLALLLTAIIDLTKNWNERKNPVIWLVVI
                     IVINIFGPIAYFIFGRKEEGN"
     gene            2571..3476
                     /locus_tag="IBJ56_002092"
     CDS             2571..3476
                     /locus_tag="IBJ56_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418342.1"
                     /translation="MKKLEIQGLKKKYNGKWVIKGIDLTINEKECVALIGPNGAGKST
                     MINMIVQILTQDEGQITLDGQNAKSVREKIGFLPQYPEFYGWMSATECLHFMGKLSNM
                     EKTDLKTRIKEVLILVGLEESANKKISTYSGGMRQRLGIAQAILHRPELLVLDEPVSA
                     LDPIGRREMMLLLDKLKKEITILFSTHILKDAEEICDRIAIIKNGELVSDKTVVQLME
                     EESSPVFDVEFSGDSEAWQTLLLQNEHVEKIERVGMVYQVYTTNQKAGSEAILKSLLQ
                     IEGEFIRVENRHQSLEEIFMEKVGK"
     gene            3473..4267
                     /locus_tag="IBJ56_002093"
     CDS             3473..4267
                     /locus_tag="IBJ56_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAM3418343.1"
                     /translation="MTHFNALLAREWLEQRRSLKIIWLPIVFALLGLTQPLMMYFLPE
                     ILKAVGTGAETEQVIALMGDQSAQEVMAQTLGSQFDQIGIIIIIVVAMACIQNDRTRG
                     MLAFIMTRPVSAAEYVLSKWVMQCMVGLSSLLIGYVLAAYYTYFLFGELAINSLTQAF
                     FVYAIWFIFVISLVVFASAVFDSNAVVAMISVFIAIVLGVISGFGGWIQMFNPAYLSK
                     NATMLIMSDKTMDYFIPTLCITILWIFAFISLTILMIKIKPLPKTE"
     gene            4337..5704
                     /gene="fumC"
                     /locus_tag="IBJ56_002094"
     CDS             4337..5704
                     /gene="fumC"
                     /locus_tag="IBJ56_002094"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HAM3418344.1"
                     /translation="MERIERDTLGEISVDATKYWGAQTERSKRNFAIGDNPMPIEIIY
                     AFAQLKKATAKVNAAEGKLSEEKAIAIGQVCDQIIQGELDEHFPLVVWQTGSGTQSNM
                     NVNEVIAHVANLTLGEGQIHPNDDVNMSQSSNDTFPTAMHIAAYGALVTKLLPEITKM
                     EAVLAEKKNKYMHLVKIGRTHLQDATPLTLGQEISGWEACLTNNKNYLETSMKAILPL
                     AIGGTAVGTGLNASRDFGDKVAEELMKQTGYPFTSDSNKYFALTSHSPINFVHGSIRS
                     LASDLMKIANDIRLLASGPRSGIGELTIPANEPGSSIMPGKVNPTQCEAMTMVAAQVM
                     GNDVTINVAASQGNFELNVYKPVIIFNFLESVKLLSDSMRSFRLHCLEGLTANEKVIE
                     TKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKQFDLWIDPL
                     KMTNL"
     gene            5808..6941
                     /locus_tag="IBJ56_002095"
     CDS             5808..6941
                     /locus_tag="IBJ56_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HAM3418345.1"
                     /translation="MSVLFTILLMAVIGGFIGAMTNYIAIRMLFRPYKAIYLFNKRLP
                     FTPGLIPKRRDELAEHIGKVVVSHLLTEDAIRARLLDENLQKEITDTITKMFHEKMQL
                     ETTPNELLHHFGYENAEIRSMTWVEKTLEKEINHFLTTKKTTKMSDLIPTMLESELTT
                     KLPHVTERITSKMTLFVSSEEGKIQIKQMLQKFFEEHGKMGSMARMFINIDSFSEKIQ
                     QEGLKLIGQEDTKNLINQLLTTEWKNFEAKELQELIPTEKQAHLAGQLTSELIQTFPH
                     EKLFNQPIQVMLRGYEAAITEKVIPFAVERMLDFVATHSAEIVERMDLAKLVETQIAT
                     FSLPEIEKLVVEISGRELKMITYLGGILGGFIGIIQGVLAMWI"
     gene            7023..7376
                     /locus_tag="IBJ56_002096"
     CDS             7023..7376
                     /locus_tag="IBJ56_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HAM3418346.1"
                     /translation="MAVNIYDLAHDLDKGIRETPEFISLQDAYREVNENADAKAKFER
                     FRDVQVTIQEKQMTGQEIDDETVDVAQQVAQEVQENELIVKLMEKEQAMSTIINDLNR
                     IIMTPLQDLYNVAND"
BASE COUNT         2635 a         1254 c         1527 g         2109 t
ORIGIN      
        1 acaaaattat tacaaaaatc ggtctaaagt tggtggcgta aagttgcttt ttaacgtaaa
       61 atacgtgtat aactgtgtgt atagtttatt taataccgtg tagaagatag gagagttaca
      121 tggacaaatt caaacagcaa ctaattaaat acttaaaatt attctttggt tttataggaa
      181 aatggcttag caaaggatgg cagaaattta gacgtttctg gaaaaacaaa catatcggaa
      241 agattttttt actagctgga cttgtatttt tattaagttt tatcatttat cttgtaatag
      301 tagcaaaatc tgccgacata gatgcactaa aaaaaggctt agagtcagcc acgattattt
      361 atgacaaaga tggcgacaag gcaggggagc tttcttccac tgatgcaaca tttgtatcca
      421 tcgataaaat atctaaaaac ttacaaaatg cagtagtttc cattgaagat agaaaatttt
      481 atgaacataa aggttttgac ttgaaaggga tagctcgggc gggtgttaat ttagtcacta
      541 gcggaggcat ttctggtggc ggtagtacga ttacacagca actcgccaaa aatgctctac
      601 tgacacaaga acaaaccttc acacgaaaag ccaaagaaat atttatggct cgtgaaatcg
      661 aaaaaaccta ctcaaaagac gaaattatgg aaatgtactt aaaccgttct tactttggta
      721 atggggaatg gggagtagaa aatgcttcct taaaatattt tggtaaatca gcggcagact
      781 taaacatacc agaagctgcg acaattgctg gattgcttca agctccaagt gcgtatgatc
      841 cataccagca tatcgacaaa gcgactaatc gccgcaacat ggtattaaat gcaatggtcg
      901 aaacaggcac aatttcaaaa gcagaaggcg ataaatacaa agctacaaaa atagttttaa
      961 atgatcaatc aaaagatcca cttgcgaata aatatccatg gtacgtcgat gcagttatta
     1021 atgaggctgt aaatgaagca gatataacgc aagatgaaat catgcaaaaa ggatataaaa
     1081 tctatacgga attagatcaa aattatcaaa cttccttaga aaatgtttac aacaatgatg
     1141 ggttattccc ttctaatgca aatgatggca cactagttca atcaggagct gttttaatgg
     1201 atccagctac tggaggcatt agagcgcttg ttggtggacg cggagaacat gtcttccgtg
     1261 gtttcaaccg ggcgacacag atgaaagcac aaccaggttc cacaatgaag ccacttgcgg
     1321 tatacacacc ggcgcttcaa tctggttatg acgtggattc aatgctaaaa gatgaaaaaa
     1381 taacctacaa aggtaactac acaccaacca atgttggcgg cgtttatagt ggagaagttc
     1441 caatgtataa agctgtagcc aactcgatta atgcccctgc cgtttggtta cttgatcaaa
     1501 ttggtattga taaaggtgta aaatctgtcg aaaaatttgg tattacagtt ccagaaaaag
     1561 atagaacgct tggacttgca ctcggtggta tgagtaaagg tgcttcgcca gtagaaatgg
     1621 caacagcgta tgcaaccttt gctaacaatg gtgccaaacc ggaatctcat attattacta
     1681 aaattgtcga tccatcaggc aatacagttt acgaaaatgt tcctaaaact aaacaaatca
     1741 tttcagaaac agtatctaat gaaatgactt ccatgctttt agatgttatc aatacaggaa
     1801 ctggtcaaag tgcagctgtt tccggtcacg aaatggctgg gaaaacaggt tccacgcaag
     1861 ttccatttga tgatacaagc ggtactaaag atcaatggtt tgttggctac acgccaaacc
     1921 tagtcggagc cgtttggatg ggatatgata aaactgacaa agagcattac ctaactacaa
     1981 ccagttctgc tggtgtttct agtttggctc actacgtaat gaatagtggt ttgcagtatc
     2041 agaaatccgc agactttagt acgaagagtg ctgcacaaga aactgcagcg aaaaaagaag
     2101 aagaagaaaa agagaagaac agtggtagcg acttttggag tggcgtgaaa gaaaaagccg
     2161 atgaagctgg agaaacaatc aaaaaaggcg cagataaagt aaaagaattc ggtggaaaag
     2221 tttctgatgg cattggaaac ttaatcgact cgataggtaa ttaaattcaa agcacatttt
     2281 actatgttaa ctctagtaaa atgtgctttt ttgtattgca ttaatattat aactgttata
     2341 caataagtat aacaaaagaa tgaggtgagt acattggata aaacgcaaat cgcattaatt
     2401 atacccgtaa ttcttctcta tttagcttta ttattaacag ctattattga cttaacaaaa
     2461 aactggaatg aacgaaaaaa tccggttatc tggctagttg ttattatcgt tatcaacatt
     2521 tttggcccaa ttgcctactt tatttttggc cgaaaagagg aaggtaacta atgaaaaaat
     2581 tagaaattca aggactaaag aaaaaatata atggcaagtg ggtcattaaa ggaattgatc
     2641 tcacaatcaa tgaaaaagaa tgcgtggcac ttatcgggcc taatggtgca gggaagtcaa
     2701 ccatgattaa tatgattgtc caaatcttaa cgcaggatga aggacaaatt actttagacg
     2761 gtcaaaatgc aaaatcagtt cgcgaaaaaa ttggtttttt accgcaatat cctgaatttt
     2821 atggttggat gagtgcgaca gaatgccttc attttatggg aaagctatct aacatggaaa
     2881 aaacagattt aaaaacacgg attaaagaag tattaatact agtaggctta gaagagagtg
     2941 caaataaaaa aattagcacg tattcaggtg gaatgcgaca acgactcggg attgctcaag
     3001 ctattttgca tcgaccagaa cttcttgtac tagatgaacc agtatccgcc cttgatccca
     3061 tcggtcgccg ggaaatgatg ttgctattag acaaactaaa aaaagagatt actatcctat
     3121 tttccacaca tatcttaaaa gatgctgaag aaatttgtga ccggattgcc atcattaaaa
     3181 atggcgaact ggtctcagat aagacagtag tccaacttat ggaagaagaa agctcccctg
     3241 tgtttgatgt cgaatttagc ggagatagtg aagcttggca aacgttactg cttcaaaatg
     3301 aacatgtgga gaaaattgaa agagttggaa tggtttatca agtttacaca actaaccaaa
     3361 aagctgggtc agaagctatt ttgaaatctt tattacaaat agaaggtgaa tttattcgtg
     3421 tcgaaaacag acaccaaagc ttagaggaaa tctttatgga gaaggtgggc aaatgacaca
     3481 ttttaatgct ttattagcaa gagaatggct ggaacaacgt cgaagtttaa aaattatttg
     3541 gcttccgatt gtattcgcac ttcttggcct cactcaacca ctaatgatgt attttttacc
     3601 agaaattcta aaagcagttg gcacgggagc ggaaacggag caagtaattg cattaatggg
     3661 ggatcaatcg gctcaggaag tgatggcaca aacactcggt tcccagtttg atcaaattgg
     3721 cattatcatt atcatcgttg ttgcgatggc ttgcattcaa aatgaccgaa ctagaggcat
     3781 gttagcgttt atcatgacaa gaccagtgag cgctgcggaa tatgttttat cgaaatgggt
     3841 aatgcaatgt atggtggggt taagttcact tttaattggc tatgtgttgg cggcttatta
     3901 tacgtacttt ttatttggag aactagcgat caattcttta acgcaggcat tttttgtgta
     3961 cgccatctgg tttattttcg taattagctt ggttgttttt gcgagcgcgg tttttgatag
     4021 taatgccgtt gttgcgatga ttagcgtgtt tatagcaatt gttttagggg taatcagtgg
     4081 ttttggcggc tggattcaaa tgtttaatcc agcatatcta agtaaaaatg caacaatgct
     4141 aattatgtct gataagacga tggattattt tattccaaca ctttgtatta ctatcttatg
     4201 gattttcgca tttataagtc taactatcct aatgataaaa ataaaaccac tcccaaaaac
     4261 ggaatagcga acatttttca tgtgttttgc gaaaacatcc gctttatact aaaatagaat
     4321 aaaaaggggt ggcgacatgg aacgaataga gcgagatacg cttggagaaa tttctgtaga
     4381 tgcgacgaaa tattggggag cgcaaacaga acgaagtaaa aggaactttg ctattggtga
     4441 taatcctatg ccgatagaaa ttatatatgc ttttgctcaa ttaaagaaag ccactgcaaa
     4501 agtaaacgca gcagaaggaa aactatccga agaaaaagcg atagcgattg gccaggtttg
     4561 tgatcaaatc attcaaggag aactagatga gcattttcct ttagtcgttt ggcaaaccgg
     4621 aagcggaacg cagagcaaca tgaatgtcaa tgaagttatc gcacatgttg ccaacttaac
     4681 tttaggcgaa ggacaaattc atccgaatga tgatgtcaac atgtcgcaaa gctcgaacga
     4741 cacatttcca acagcgatgc atatcgctgc atacggggct ttagtaacaa aacttttacc
     4801 tgaaataact aaaatggaag ctgttttggc agagaagaaa aataaataca tgcatctcgt
     4861 taaaattggc agaacacatt tgcaagacgc aaccccatta acacttggcc aagaaattag
     4921 tggctgggaa gcatgtctta caaataataa aaactatctt gaaacaagta tgaaagcaat
     4981 tttgccactt gcgattggtg ggacggcagt tggaactggc ttaaatgcct cacgtgattt
     5041 tggtgataag gttgccgaag aattgatgaa acaaacggga tatcctttta cttctgattc
     5101 caataagtat tttgctctaa ctagtcatag tccgattaat tttgttcatg gatccattcg
     5161 tagccttgct tcggatctaa tgaaaattgc taatgatatc cgtttgttag caagtggacc
     5221 acgtagcggc ataggggagt taacgatccc agctaatgaa ccaggaagct ccattatgcc
     5281 aggaaaagta aatcctactc aatgtgaagc aatgacgatg gtagcggctc aagtcatggg
     5341 aaatgatgtg acaattaatg ttgccgccag ccaaggaaac tttgaactca atgtctacaa
     5401 gccagttatc atttttaatt tcttagaatc tgtcaaactg ctttcagata gcatgcgttc
     5461 gttccgattg cattgtttgg aaggactcac tgcgaatgaa aaagttattg aaacaaaagt
     5521 aaatgactcc ctaatgcttg tgacagcatt gaatccgcat atcggctatg aaaaagctgc
     5581 caaaattgcc aagctggctt ttgatgaaaa tacgacatta aaagaagcgg caatcaaaac
     5641 cggttttgtg acagaaaaac aatttgattt atggattgat ccgttaaaaa tgactaattt
     5701 gtaatctcat actttagaat gaacttccct agaaacaatt gttgtctagg gatttttcac
     5761 gtataatgaa accactttta ctagacaaat attaggagat gcaaaacatg tcagtgttat
     5821 ttacgatact tttaatggct gtgattggcg gatttatcgg cgcaatgacg aattatatcg
     5881 ccatacgaat gctttttcgc ccttacaaag ccatttacct atttaataaa cgtttaccat
     5941 ttactccagg tttaatccct aaacgacgtg atgaactagc cgaacacatc ggaaaagtag
     6001 tagtgagtca tttgcttaca gaagacgcca ttcgtgctcg tctgctagat gagaatttac
     6061 aaaaagaaat aacagatact attacgaaaa tgttccatga aaaaatgcaa ttagaaacca
     6121 cacccaatga actcctccat catttcggtt atgaaaatgc agaaattcgt tctatgacat
     6181 gggtagaaaa aactttagag aaagaaatca accactttct aactactaaa aaaacgacaa
     6241 aaatgagcga tttaattcca actatgttag agtcagaact aacaactaaa ctaccgcatg
     6301 taacagaaag aatcacgagc aaaatgacat tgtttgtatc gagtgaagaa ggcaaaattc
     6361 aaattaaaca aatgctacaa aaattctttg aagaacacgg caaaatggga agcatggcta
     6421 gaatgtttat taatatcgat agcttttctg aaaaaattca acaagaaggc ttaaaactca
     6481 tcgggcaaga agacactaaa aatctaatta atcaacttct aacaacagaa tggaaaaatt
     6541 tcgaagcaaa agaattacaa gagcttatcc cgactgaaaa gcaagctcat ttagctggac
     6601 aacttacttc tgaacttatc caaacttttc ctcacgagaa attatttaat cagcccattc
     6661 aagtgatgct acgtggctat gaagcagcta ttacagaaaa agtaattcct tttgcagtag
     6721 agaggatgct tgattttgta gcaacacata gtgcagaaat agtagagaga atggacttgg
     6781 cgaaactcgt tgaaacacaa attgccactt tttctttacc tgaaatcgaa aaacttgttg
     6841 tagagatttc tggtagagag ttaaaaatga ttacttattt aggtgggatt ttaggtggat
     6901 ttattggaat tatccaaggt gttctcgcaa tgtggattta gttcttttat actggaataa
     6961 ccggcgactt tttgttatag tgaaacagaa gtgacaaata cagatatttg gaggatttat
     7021 caatggcagt taatatttat gatttagcac atgatttaga caaaggaatt cgtgaaacac
     7081 ctgaattcat cagcttacaa gatgcatacc gtgaagtaaa cgaaaatgca gatgcaaaag
     7141 caaaattcga acgttttcgc gatgttcaag taactatcca agaaaaacaa atgactggtc
     7201 aagaaattga cgacgaaaca gtagatgtag cacaacaagt agcgcaagaa gttcaagaaa
     7261 acgaactaat cgttaaatta atggaaaaag agcaagcgat gagtacaatt atcaatgatc
     7321 taaatcgcat tatcatgacg ccattacaag atctttataa tgtagctaat gattaatttt
     7381 cattaaacca agtggctcta ttatttgtta tttatttagc agataatagg gtcatttttt
     7441 tattggaaat gcttgtacct aacgtaatag tacgatataa taagaacgta tattcggttt
     7501 ttataggagg cgaaagtcat gaaag
//
LOCUS       DABQVC010000137         7397 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.137,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000137 DABQVC010000000
VERSION     DABQVC010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7397
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.137"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..307)
                     /locus_tag="IBJ56_002097"
     CDS             complement(<1..307)
                     /locus_tag="IBJ56_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1634 domain-containing protein"
                     /protein_id="HAM3418347.1"
                     /translation="MAEKKEEMYRVELIVSALLRIGVVLSAIIIVFGLVMLFITGESG
                     YPGETYPTSLTAIFSGLGTLKPYAIMMFGLFCLILTPVLRVVVSLFTFLKEKDYLYVG
                     "
     gene            complement(308..1147)
                     /locus_tag="IBJ56_002098"
     CDS             complement(308..1147)
                     /locus_tag="IBJ56_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HAM3418348.1"
                     /translation="MDITQTVEILLISVFAGVVGSLLGLGGGIIVTPALTLIFGIDIQ
                     YAIGASIISVIATSSGSAIAYIKDGITNLRVGMFLEIATTIGAITGAFVSGLLSATAL
                     YIIFGLLLLYSAFNMIKKVGTEFPTNVKPDPLATKLNLHDSYYDKSLRQTVDYQVANV
                     PAGFGVMYGAGIASGLLGIGSGAFKVMALDVFMKMPLKVSSATSNLMMGVTAAASATV
                     YLFQGDIQPAIAAPVAIGVLVGATLGTRIMQRLKSKVIRIIFIPVILYVAFQMILEGL
                     GWI"
     gene            1283..2671
                     /locus_tag="IBJ56_002099"
     CDS             1283..2671
                     /locus_tag="IBJ56_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009924752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HAM3418349.1"
                     /translation="MKHLTLWHTNDVHSHLEHWPRIFNFLKEKRTAADKENQSALFFD
                     IGDFLDRVHPLTEGTNGLANTDLLNQLPYDAVTFGNNEGTTLAHEDLDKLYEHAAFPV
                     VCCNFYANKECTKQSDWVKSIVYKEVEQVKIAIIGATAPFREYYEAMGWGVEEPMSAI
                     KKQIAGLDANTDVVILLSHLGLPTDERIALELPEIDIILGGHTHHLLENGKIEGNALL
                     AAAGRWGEHVGKVTIELDENNQIISKKAVTFATEKLPIPPNETAEIQAFFDKGREELS
                     EKVVAIPGKLAHNWFDDSEIAHILNEAVCEWTGAETFVMNAGIFMTDFEAGIVTEFDI
                     HQMLPHPLNAIALTMSGEELEILIDGIYRKKAELQDIPLRGFGFRGEYFGTVLMDRAG
                     FDAENQVALFDNKPIDKTREYRIATHDTFVFAPFFPIVKQIKRKEVYTPELLRDILKW
                     KLKKMYGQEEDK"
     gene            2668..2943
                     /locus_tag="IBJ56_002100"
     CDS             2668..2943
                     /locus_tag="IBJ56_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YutD family protein"
                     /protein_id="HAM3418350.1"
                     /translation="MTITIQDLNYEIITNYRDAFDEEKLNERFSDILGRYDYIVGDWG
                     YDQLRLKGFFEDDNRKAAYDNKISTLKEYIYEYCNFGCAYFVIKKVK"
     gene            2963..3730
                     /locus_tag="IBJ56_002101"
     CDS             2963..3730
                     /locus_tag="IBJ56_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HAM3418351.1"
                     /translation="MKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGIPYLFVTN
                     NSTKTPGQVAEHLTDMGIQAVSEDVFTTSQATVQFMIEQKREKSVYVIGERGIKQELT
                     DNGFEITSSNPAFVVVGLDREVNYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPG
                     NGSITSVVSVATETAPVFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINY
                     GMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWKFN"
     gene            3779..4222
                     /locus_tag="IBJ56_002102"
     CDS             3779..4222
                     /locus_tag="IBJ56_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418352.1"
                     /translation="MVSIQKLTKDNFHETAKLEVHPHQKTFVAENWYSIIEASFEETY
                     HSLVIYADNMPVGYAMYGMDTDDGEFWLVRFMTGKEHQGKGYGGDALEQIIEMVKNLP
                     EKPARLRLSYEPDNTVAEKFYAKYGFEKTGEIIDGEAVADLWFKR"
     gene            4258..5568
                     /locus_tag="IBJ56_002103"
     CDS             4258..5568
                     /locus_tag="IBJ56_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAM3418353.1"
                     /translation="MDIFNDFFVIFLIAATAFFVASEFAIVAIRKPTVLQLVASEDPR
                     AKYVKKVTSNMNDYLAACQLGNTLAALAMGWVGEATMRGWLEPLFLMLPVPESVEKPI
                     SIFVSFILITFLNVVLGELAPKTFTIQSTEKVALFIARPLVYWYRLTFPLNWLLNNSA
                     NLITRMFGVKQTVDADQMTPTELKIIFEDSYRQGLLNPQEFRYMKNIFKLGDVPAKEV
                     MIPRMSMIAIDQTATVRDLLKLTSEHTYHIFPVTEDEDKDHIIGMLRVSAVMAGLGKD
                     ETIVTQSIQPFITPVLEVFEGMILEELLVKMQQESEPFVVLTDEYGGTSGIVTLEDVM
                     EVIVGDMEEAKGPKGIRKVALNHYIIEGSEPLLEVEEALGVPIEGPGVHTLSGWMLLE
                     RFDLEAGDEIEHEGYRFIVRSMNKNSIRQVEVKLGKEKPVKLEE"
     gene            complement(5593..6093)
                     /locus_tag="IBJ56_002104"
     CDS             complement(5593..6093)
                     /locus_tag="IBJ56_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HAM3418354.1"
                     /translation="MVEKQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELD
                     ICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALS
                     IVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSY
                     HDDIVN"
     gene            complement(6206..6442)
                     /locus_tag="IBJ56_002105"
     CDS             complement(6206..6442)
                     /locus_tag="IBJ56_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HAM3418355.1"
                     /translation="MEEISYAEVDKALKKFRPFLVRDGGDYELIEVTQDGVVKIKLLG
                     ACETCPSSDMTLKMGIELTLAEKIIGFKEVVQVF"
     gene            complement(6615..7397)
                     /locus_tag="IBJ56_002106"
                     /pseudo
     CDS             complement(6615..7397)
                     /locus_tag="IBJ56_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465919.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="MucBP domain-containing protein"
BASE COUNT         2276 a         1349 c         1636 g         2136 t
ORIGIN      
        1 ttccaacgta caaataatct ttttccttca aaaaagtaaa taacgataca acaacacgaa
       61 ggactggcgt taaaattaag caaaagagac caaacatcat aatcgcatat ggtttaagcg
      121 tccctagccc actgaaaatc gccgtaagcg aagtcggata agtttcccca ggatagccac
      181 tttcaccggt gataaatagc ataacaaggc cgaaaacaat aataatcgca ctgaggacaa
      241 caccgattct tagcaacgcg ctaacaatta gctcgacacg gtacatttct tcttttttct
      301 ctgccattta gatccacccc aatccttcta aaatcatttg gaaggcaaca tataaaatga
      361 cgggaataaa aataatccga ataactttgc tttttaaacg ttgcataatg cgtgttccaa
      421 gtgttgcacc gacaagtacg ccaatcgcaa ctggagctgc aatcgcaggc tggatgtcgc
      481 cttggaaaag gtacacggtt gcactggcag ccgcagttac gcccatcatt aaattactcg
      541 ttgcgctact tacttttagc ggcattttca taaagacatc aagtgccatt actttaaatg
      601 cgccactacc gattccaagt aagccactag cgattccggc gccgtacatc acaccaaaac
      661 cagcagggac gtttgccact tgataatcaa ctgtctgccg taaagattta tcgtaatatg
      721 aatcatgtaa gtttagtttg gttgcgagtg ggtctggttt cacattggta ggaaattctg
      781 taccgacctt tttaatcatg ttgaaagcag aataaagaag taaaagtccg aagatgatgt
      841 agagtgccgt ggccgagagc agtccgctga cgaaagcccc agtgattgca ccaattgttg
      901 tggcaatttc gagaaacatc ccgacacgaa ggttcgtaat gccgtctttg atataagcaa
      961 ttgcggagcc actacttgta gcgataacgg aaataatact tgcaccaatc gcatattgaa
     1021 tatcaatccc gaaaataagt gtcaaggcag gcgtcacgat aattccgcca ccaagcccga
     1081 gcaaagagcc tactacccct gcaaaaacag agattagaag aatttcgact gtttgcgtaa
     1141 tatccaaaaa aatcacttcc ctttaaaaca atatatccta tcataacata aaatgaaaag
     1201 ggaacaattc atccagtcct agtgcgtgta aaaaaagctg ttttacgcta caatagttat
     1261 aagtagggag tgagatggat agatgaaaca tttaacttta tggcatacaa atgatgttca
     1321 tagtcacttg gaacattggc cacgcatttt taatttctta aaagagaaaa gaactgctgc
     1381 agataaagaa aatcagtcgg cgctcttttt tgatattggt gattttttgg accgggtcca
     1441 tccgcttact gaaggaacga acgggcttgc gaatacggac ttacttaacc aactgccgta
     1501 tgatgcggtg acttttggta ataatgaagg aacgactttg gcccatgaag acttggataa
     1561 attatatgaa catgcggcct tcccagtagt ttgctgtaat ttttatgcga ataaagagtg
     1621 tacaaagcag tcggactggg tgaaatcgat tgtttataaa gaagtagaac aagtgaaaat
     1681 tgctattatc ggtgcaacgg cgccgtttcg ggaatattac gaggcaatgg gctggggagt
     1741 agaagaacca atgagcgcga ttaaaaagca aattgctggc ttagacgcga atacagatgt
     1801 agttatttta ctgagtcacc ttggcttgcc gacagatgaa agaattgctt tagaattacc
     1861 agaaattgat attatattag gtgggcatac ccatcattta cttgaaaatg gaaaaataga
     1921 aggaaatgca ttactggctg ctgccggaag atggggcgag catgtaggga aagttactat
     1981 cgagctagat gaaaataatc agattatctc taaaaaagca gtaactttcg caaccgaaaa
     2041 acttccaatc ccaccaaatg aaacggcaga aattcaagct ttcttcgata aaggacgcga
     2101 ggaattatct gaaaaagtag ttgcgattcc cggaaagtta gcgcataatt ggtttgatga
     2161 ctcggaaatt gcgcacattt tgaatgaagc ggtttgtgaa tggactgggg cagaaacatt
     2221 tgtgatgaac gcaggcattt ttatgacaga ctttgaagca gggattgtga cggaatttga
     2281 tatccaccaa atgttacctc atccgctcaa cgcgattgct ttaacgatgt ctggtgagga
     2341 gcttgaaata cttattgacg gaatctaccg aaagaaagct gaactgcaag atattccgct
     2401 tcgaggtttt ggtttccgag gcgagtattt tggcaccgtt ttgatggaca gagctggttt
     2461 tgatgcggaa aatcaagtgg cactttttga taataaaccg attgataaaa cgcgggaata
     2521 ccggattgcg acgcatgata cgtttgtgtt cgcaccattt ttcccgatag taaagcaaat
     2581 taaacgaaaa gaagtatata caccggagtt actccgagat attttaaaat ggaaacttaa
     2641 aaaaatgtac ggacaggagg aagacaagtg acgattacga ttcaagattt aaactacgag
     2701 attatcacca attatcgcga cgcttttgac gaggagaagt taaatgaacg gtttagcgat
     2761 attcttgggc gatatgatta tatagtaggt gactggggtt acgatcaact ccgtctcaaa
     2821 ggcttttttg aagacgataa ccgcaaagcc gcatacgaca acaaaattag cacgttaaaa
     2881 gaatatattt acgaatactg caatttcggt tgtgcgtatt ttgttattaa aaaagtaaaa
     2941 tagtaaaaga ggtaattagg aattgaagaa ttataaagcg tatttaattg atttagatgg
     3001 cacgatgtat cgcggggcag aagttattcc tgaggcgatc atttttatcg aaaacttaaa
     3061 acgtgcggga attccgtatt tatttgtaac aaacaattca acaaaaacac ctgggcaagt
     3121 agcagaacat ttaactgaca tggggattca agctgtaagt gaggatgttt tcacgacgtc
     3181 acaagcaacc gtgcaattta tgatagaaca aaaacgcgaa aaatcggttt atgttatcgg
     3241 tgaacgtgga ataaaacaag aactaacaga taatggattt gaaataactt ctagtaatcc
     3301 agcttttgtt gtcgttgggc ttgaccggga agtcaattat gagaaatttt caaaagcagc
     3361 gcttgcggtt cgcggtggag cgatgtttat ttcgacgaat ggcgatgcgg caattccgac
     3421 agagcgtggt ttgcttccgg gaaatggttc catcacatct gtcgtttccg tagccacaga
     3481 aacagcgcca gtttttattg ggaagcctga atccattatt atggagcaag cactcgcaaa
     3541 actcggtgtc cataaagacg aggcaatcat ggtgggtgac aactacgaaa ccgatattat
     3601 ggcgggcatc aattatggca tggatacgtt aatcgtacac actggcttta catcaaaaga
     3661 agcattatta acgaaagaaa tccaacctac atacgctgta accaaactaa ctgattggaa
     3721 atttaactag aagagcggaa tttttctgct ctttttttaa taaataggag gttagaaaat
     3781 ggtctcaatt caaaagttaa cgaaagacaa ttttcacgaa acagcaaaat tagaagtgca
     3841 tccacaccaa aaaacatttg tcgcagaaaa ctggtattcc attatcgaag caagttttga
     3901 agaaacgtat cattcgcttg taatatacgc ggataatatg ccggttggct acgcaatgta
     3961 tggaatggat acagatgatg gtgagttttg gttggtacga tttatgactg ggaaagagca
     4021 tcaaggtaag ggctacggcg gagatgcgct agaacaaatt atcgagatgg tgaaaaatct
     4081 accagaaaaa ccagcacgtc tgcgtctatc ttacgaacca gataatacgg tagcagagaa
     4141 attttatgca aaatatggat ttgaaaaaac gggggagatc atcgacggcg aggcagtggc
     4201 cgacttgtgg ttcaaacgtt aaaatcgggt atagaatggg gataaggagg atgctaaatg
     4261 gacattttta atgatttctt tgtgatattt ttaattgcag cgactgcctt tttcgtggca
     4321 agtgaatttg ccattgtcgc aatccggaaa cctactgtcc tgcaactagt agcctcagag
     4381 gacccgcgag cgaaatatgt aaaaaaagtt acttcgaata tgaatgatta tttggctgcc
     4441 tgtcagttag gtaatacact tgccgcactt gctatggggt gggttggtga agcaacaatg
     4501 cgtggctggt tggagccgtt atttttaatg ttacctgtac cagaatccgt tgaaaagccg
     4561 atttcgattt ttgtttcgtt tattttaatt acattcttaa atgtggtact cggggaactt
     4621 gctccgaaaa catttacaat tcaaagcaca gaaaaagtag ctctgtttat cgcgcgcccg
     4681 cttgtgtatt ggtatcgcct gacttttcca ctcaattggc ttttaaataa ctcggcgaat
     4741 ttaatcacgc ggatgtttgg ggtaaaacaa acagttgatg cggaccaaat gacaccgacc
     4801 gaactgaaga ttatttttga agatagctat aggcaaggac ttttgaatcc acaagagttt
     4861 cgttatatga aaaatatttt caaactcggg gacgtgccag cgaaagaagt aatgataccg
     4921 cgaatgtcaa tgattgcgat tgaccaaacg gcgaccgtaa gagatttact gaaattaact
     4981 tctgaacata catatcatat ttttccagtt acggaagatg aagataaaga tcatattatc
     5041 ggaatgctac gagtcagtgc ggttatggct ggacttggaa aagatgaaac gattgtgacg
     5101 caatctattc aaccatttat tacacctgtt ttagaagtgt ttgaaggcat gattttggaa
     5161 gagttacttg tgaaaatgca gcaagaaagt gagccgtttg tcgttctcac ggatgaatac
     5221 ggcgggactt cggggattgt gacgctagaa gatgtcatgg aagtaattgt tggtgatatg
     5281 gaagaagcaa aaggtccgaa agggattcga aaagtagctt tgaatcatta tattattgaa
     5341 ggatctgagc cgcttcttga agtcgaggaa gcactggggg tcccaattga agggccgggt
     5401 gttcatacgt tatcgggatg gatgttactc gaacgttttg acttagaagc tggtgatgag
     5461 attgaacatg agggataccg ctttatcgtt cgttcaatga ataaaaactc gattcggcaa
     5521 gtagaagtaa aattagggaa agaaaaacca gtaaaattgg aggaataagc ctcttgtttt
     5581 actggttttt gtttaattaa cgatgtcgtc gtgataacta tgcgcaagcc gacttgcagc
     5641 ggccgcagcg atagcgccaa caatatcatc gagaaatgtg tgaacggcga taccatcgtg
     5701 ttcatttaat tttgcaagaa tacctggttt tactttatcg atataaccgt aattggtaaa
     5761 tccaatagat ccgtacacat tgacgatgga gagcgcaagt atctcgtcga cgccgtacag
     5821 cccctcatca gcgctaatga tattttgtag tggttggacg agttctcctt tttcagccat
     5881 cacatcaagc tgtatgcctg ttaaaacagc attttggact tctcgcttac gaagaacatg
     5941 ctccacattt tgacggcaaa tatctaattc caatccaggg tgatattttt gctgtaaaaa
     6001 taatacaagt tctgcgatat catcaatttc tacgccccgt tcgatgagcc aactgcgtgc
     6061 ttttgattct aaggcacttt gtttttctac cattttttct tacctccttc taactgtatg
     6121 tatattgtat gatagacgtt tacaggattt ctaaaccttt ttatacaaaa atagcgaccg
     6181 attgtttggt cgctaaaata tttgtttaaa aaacctgaac aacttcttta aagccgataa
     6241 ttttttctgc taaagttaat tcgataccca tttttaaagt catatcagaa ctggggcaag
     6301 tctcgcatgc accaagtagt ttaattttta cgacaccgtc ttgtgtgact tcgataagtt
     6361 catagtcccc gccatcacga actaaaaacg gacggaactt ttttaaagct ttatcaactt
     6421 cggcgtagct aatttcttcc ataggatata gttctccttt cgtgaggcat tgttatattt
     6481 tctattataa caggatatgg ggaaatttaa agaaattaaa ttgggttttc tgaggttgga
     6541 agtagtgcaa tatgaagtaa ttaccaaaca aaaactctct tatccaattg ataagagagt
     6601 tttagctatt tattttagct gtttttctta gagatagagt aaattcctaa gagaacgaaa
     6661 catgtaccaa ttaatccaaa caatatacta tcttgttgat tatcaccagt tttcggtaat
     6721 tttgtttgtt ttttgattct agttactttg cttgctgttg gtttgttttc gctgatttta
     6781 ataggtgttt tgtttttatc ctctttttta ggattgtctt cttgtttagc atatacaaag
     6841 gtgactgttt gagcatcagt tgtaaatacg ccattagcgt tggctggtgt ggctgttagc
     6901 ttccaaccac tcaagttttt agctgttgcc gcgtaagatg tatctagctt accgttcatg
     6961 tatctggagt agctaattcg ttgccgtccg cgtcgacgta tttcacggta acaggagcgc
     7021 catccgcttt ttcatacaca taagtgaccg tttggttagc gtttgtgaat acgcccgttg
     7081 cgttggcagg agtcgttttg actgtccaac cagaaagact tttagcggta gtttgataag
     7141 gagcatcaat tttgccgttc agtgtgtcgg aagtagctaa ttcgttgcca tccgcgtcga
     7201 catatttcac ggtaacagga gcgccgtctg ctttttcata gacataagtg accgtttggt
     7261 tagcgtttgt gaatacacca gttgcgttgg caggagtcgt tttgactgcc caaccagaaa
     7321 gacttttagg gttagtttga taaggagcat caattttgcc gttcagtgtg tcggaagtag
     7381 ctaattcgtt gccatcc
//
LOCUS       DABQVC010000138         7264 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.138,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000138 DABQVC010000000
VERSION     DABQVC010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7264
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.138"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(33..407)
                     /locus_tag="IBJ56_002107"
     CDS             complement(33..407)
                     /locus_tag="IBJ56_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HAM3418356.1"
                     /translation="MAKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRI
                     GTSFDAVNEAIESNEANKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATA
                     AQVQMDEKPEVIAANLKTIEIK"
     gene            complement(411..1007)
                     /gene="dhaL"
                     /locus_tag="IBJ56_002108"
     CDS             complement(411..1007)
                     /gene="dhaL"
                     /locus_tag="IBJ56_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HAM3418357.1"
                     /translation="MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMAR
                     GLGELKKAFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDSETIDA
                     EGLTKVLEAGLEGIEKRGKSHAGEKTMIDVWEPVVNALHQEDLTDDVVDAALQKTKDL
                     KATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS"
     gene            complement(1029..2018)
                     /gene="dhaK"
                     /locus_tag="IBJ56_002109"
     CDS             complement(1029..2018)
                     /gene="dhaK"
                     /locus_tag="IBJ56_002109"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HAM3418358.1"
                     /translation="MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPG
                     KVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLI
                     VKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKII
                     GAAAEAGASLDELKALGEKVIASVKTLGVALTPCTVPEVGHPGFELGDDEIELGIGIH
                     GEPGFTREKIMPSASLAKQLYERISNESKLLPGDKVVVLVNGMGATPLMEQYVFANDV
                     HELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW"
     gene            2202..3581
                     /locus_tag="IBJ56_002110"
     CDS             2202..3581
                     /locus_tag="IBJ56_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAM3418359.1"
                     /translation="MRNQSKMPLVERLDAHAKSCPISLHVPGHKSGAIYPDAWQKFLK
                     WDVTEITGMDDLHHPEDVILEAEELLAECYGSKKSYFLVNGTSGGSLAVIMATLKHGE
                     KVLVPRDAHKSILHGIELAGGEPIFLTPATNKEVGVASGVTTELLEETLHNHPDIKLC
                     IFTYPSYYGTTFNLQKCIRIAHDFGAVVFVDEAHGAHFLTSSEFPKSAVELGADVVVQ
                     SAHKTLPALTMGSYLHVVNDLPIFEKLPYYLQVFQTSSPSYLIMASLDAARKYAATYT
                     AADVEAFWKMRARWIKWLTKNKFDVILPDDPLKIIVRKTGYTGYELQAIFEESSYFPE
                     LADESQVLLILPLIKKGIDFTPISRIHSPVKKEIAKEPYEMSAPFASGLALTYEEMHA
                     RATEFVLLDEATTRVSAETISLYPPGIPAIIRGESITEKHIRELKNIRTRHYQGGEKL
                     AENYIRVFR"
     gene            3634..4260
                     /locus_tag="IBJ56_002111"
     CDS             3634..4260
                     /locus_tag="IBJ56_002111"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HAM3418360.1"
                     /translation="MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGIDFIKTREPGGSP
                     ISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKTVLCDRFMDSSL
                     AYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKE
                     DITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA"
     gene            4369..4698
                     /locus_tag="IBJ56_002112"
     CDS             4369..4698
                     /locus_tag="IBJ56_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418361.1"
                     /translation="MKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGGFLKAGNTTF
                     IIGTEDERVEDALAIIKENCKAREQMMTPSASLGVTVDTYVPYPIEVQVGGASVFVMP
                     VESFHHF"
     gene            complement(4929..6704)
                     /locus_tag="IBJ56_002113"
     CDS             complement(4929..6704)
                     /locus_tag="IBJ56_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-beta-N-acetylmuramoylhydrolase"
                     /protein_id="HAM3418362.1"
                     /translation="MQKTRKERILEALQEEKKNKKSKKFKTGATIAGVTAIATSITVP
                     GIEVIVSADETAPADEASKSAEANTTKETPATATPENTTEPTVEAKQTETKEQTKTAE
                     ENQAAAKQVEKAPAEPATVSNPDNATSSSTPATYNLLQKSALRSGATVQSFIQTIQAS
                     SSQIAAENDLYASVMIAQAILESAYGTSELGSAPNYNLFGIKGAYNGQSYTKQTLEDD
                     GKGNYYTITAKFRKYPSYHQSLEDYAQVIRNGPSWNPNYYSKVWKSNTTSYKDATKAL
                     TGTYATDTAYATKLNDLISRYNLTQYDSGKTTGGNSGSTGNTGNSSNTGNTSNAKIYT
                     VVKGDSLWRIANNHKVTVANLKAWNNLKSDFIYPGQKLKVSAGSTTSDTNTSKPSTGT
                     STSKPSTGTSTNAKVYTVVKGDSLWRIANNHKVTIANLKSWNNLKSDFIYPGQKLKVS
                     AGSTSNTNTSKPSTNTNTSKPSTNTNTNAKVYTVAKGDSLWRIANNHKVTIANLKSWN
                     NLKSDFIYPGQKLKVSAGTTTNTNTAKPSTNKPSNSTVKTYTVKKGDSLWAISRQYKT
                     TVDNIKAWNKLTSNMIHVGQKLTIK"
     gene            6866..>7264
                     /locus_tag="IBJ56_002114"
     CDS             6866..>7264
                     /locus_tag="IBJ56_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3418363.1"
                     /translation="MITNESIMDATLCMMAKHGIKGSTTRQLAEAAGINEATIFKKFK
                     SKDNLIHMTLEVQFESMKAEINQFFDKDFESAKVFLRQASQFISDIYEKYRDFMVISV
                     REMGSKDMEFIDPSIVEYLYERVNQKVKEMV"
BASE COUNT         2016 a         1438 c         1548 g         2262 t
ORIGIN      
        1 agacaaattg catctaaagg gatttttttc agttatttaa tttcaattgt tttaagattt
       61 gctgcgatga cttctggttt ttcatccatt tgaacttgag cagcagtagc gtaagcacct
      121 tctaaaattg gtgcattaaa gagaataatt tctttttcgc tgatttcttc tactgtttct
      181 atattcattt tggcgcttcc gaggtcgtag aaagtgtaga ctttattagc ttcgttactt
      241 tcaatcgctt catttacggc atcaaaactt gtgccaatgc gaccgtcttc tgttccaccg
      301 gcatgcgtga tagagacgtc tggggcaatt tctttaataa tatcatggac gccttttgcc
      361 acatctttgg aatgagaaat gataacaacg ccataaggtt tagccatggg ttagctcacc
      421 tccgtttgaa gcattgcgtg aaatagcagg gcagaagagt aagcgccagg gtcaaggtga
      481 ccaattgacc gctcaccaag ataactcgcg cgacctttag tagcttttaa atcttttgtt
      541 ttttgtaaag cggcatcaac aacatcatct gttaaatctt cctgatgaag cgcatttaca
      601 accggttccc aaacatcaat cattgttttc tcgccagcat gggatttacc gcgtttttca
      661 atcccttcaa gtcctgcttc aagcactttg gttaagcctt ccgcgtcaat tgtttctgaa
      721 tctaccgctt tactcatgtt taaaaaggct gttccataaa gtggtccaga tgcgccgccg
      781 accttgctga ccatcgtcat cccagcggtt ttaaatacat cttttaaatc agcgggttct
      841 ttttctgtga aagctttttt gagttcgccg agtccgcgag ccatattgat accgtggtct
      901 ccgtcgccaa tcgcttggtc gagatcactt aataattgtt tgttttcttg tacgcgttcg
      961 ccgaagtcat ttaaccagcg taacgcccaa tctttatcat aagtcatgat tcattcctcc
     1021 aaattttatt accatgcaat tgtgtccact gggagtttca acatatcaac ccatttttcg
     1081 tcctctaatt tcaaaatggt taaggataaa ccagccattt caagagaagt catataatct
     1141 ccaacgagtg ttttttcaac ttgaacgccg gcatttttta gaagttcatg gacatcattt
     1201 gcgaaaacat attgttccat aagtggtgtt gcgcccatgc cgttcacgag cacaaccact
     1261 ttatctccag gtaggagttt actttcattg ctaatccgtt cgtacagttg cttcgctaaa
     1321 cttgcagatg gcatgatttt ttcacgcgta aagccaggtt caccgtggat accaatgcca
     1381 agttcgattt cgtcgtcacc aagctcaaag ccaggatgtc caacctcagg aacagtacat
     1441 ggagtaagtg cgacaccaag cgttttaacc gaagcaatta ctttttcacc aagggctttc
     1501 agttcatcaa gagatgcgcc tgcttctgcg gctgccccga taattttatg cacgagaaca
     1561 gtcccggcta caccgcggcg tcccgttgta aaagtactat cctcaacagc aatatcatca
     1621 tctactacaa tttgttctac tttaatatca tcggcatctg ctaaatctgc cgccatttca
     1681 aaattcatta cgtcaccagt ataatttttt acgattaaaa gtacaccagc gccttgatct
     1741 gcggctttta taccttcata aatttggtcg ggagttgggg aagtgaaaac atcgccacat
     1801 acagccgcag agagcattcc gcgaccaaca taaccagcat gagccggctc gtgaccagaa
     1861 cctccaccgc ttacaagtcc gacttttcct ggacgtttat catttcttgc aatgacgcga
     1921 gttccttcga cacggtgaac aacatcagca tgcgatttca ctaaaccttc caccatctgt
     1981 tctactactt gatcagtacc gttaagaatc ttcttcatct gacaaaaaac ctcctttaaa
     2041 attgtcctct tacctcaatt tccctttact agaaagtcaa aacgtagttg ctgtctttat
     2101 tatacaactt ataaaatgaa aacgctttaa aactgcaaga atgtgtcata aacccagcaa
     2161 aatggtacaa tgaaggagag aatttgaaaa ggggaattgt tatgaggaat caatctaaaa
     2221 tgcctttagt ggaacggtta gatgctcatg ctaagtcttg cccaatatca ctccatgttc
     2281 ctggacacaa aagtggagcc atttatccag atgcatggca aaaatttttg aaatgggacg
     2341 taacagaaat cactggaatg gatgatttgc accacccgga agatgtgatt ttggaagcag
     2401 aagagttact tgcagaatgt tatggaagca aaaaaagcta ctttttagtt aacggaacaa
     2461 gcggaggaag cttggcggtt attatggcga cgttgaagca cggggagaaa gttttagtgc
     2521 caagagatgc gcataaatca atcttgcatg gaatcgaact ggcaggcgga gaaccgattt
     2581 tcttaacccc agcgacaaac aaagaagttg gcgtcgcgag tggcgtgaca accgaacttc
     2641 tcgaagaaac attacataat cacccagata taaaactatg tattttcact tatccgagct
     2701 attatggaac gacttttaac ttgcaaaaat gtattcgcat tgcgcatgat tttggtgcgg
     2761 ttgtgtttgt tgatgaagcg cacggagccc actttttaac aagttctgaa tttccgaaaa
     2821 gtgcagtgga gcttggtgcg gatgtggttg ttcagtcggc gcataagacg ttgccggcgc
     2881 taacgatggg ttcctattta catgtggtga atgatttacc gatttttgaa aaactacctt
     2941 attacctgca agtattccaa acgagcagcc catcttattt aattatggcg tcacttgatg
     3001 cggcgaggaa atatgcggca acttacacag cggcggacgt cgaagctttt tggaaaatgc
     3061 gtgccagatg gattaaatgg ctgacgaaga ataaatttga cgttattttg ccagatgatc
     3121 cgcttaaaat catcgtgcgc aaaacaggct acacgggcta cgaactgcaa gcaatttttg
     3181 aagaaagttc ttatttccca gagcttgccg atgagtcaca ggtattactg attttaccat
     3241 taattaaaaa agggattgat ttcacgccga ttagccggat tcattctccg gtgaaaaaag
     3301 aaatcgcgaa agaaccatat gaaatgtcag cgccttttgc gtcaggtctt gcgctaactt
     3361 acgaagaaat gcacgcacgc gcgaccgaat tcgtattact agatgaagct acgacacgcg
     3421 tttcggctga aacaatctcg ctctatccgc cgggaattcc agcaatcatc cgcggagaaa
     3481 gcatcacaga aaagcatatc cgcgaactaa aaaacattcg cacacgccac taccaaggcg
     3541 gcgaaaaact agccgagaat tacatccgtg tattccgcta atttatgcta taatcaaaca
     3601 gaaagcgacg cgaaagggaa aggaaattac taaatgaaag caatttttat tacactcgaa
     3661 ggcccagatg gctctggtaa aacaacagta ggaacactac ttaatcaaaa aatgacggaa
     3721 gctggcattg attttattaa aacgcgcgaa ccaggtggca gcccgatttc agaaaaagta
     3781 agaaatatcg tgctcggaat tggcaatgaa gaaatggacc caaaaacaga agtactactt
     3841 attgcgggag cgcgccgtca acatgtcgtt gaaacaatcc gtccagctct agcggcaggg
     3901 aaaacagtac tgtgtgaccg tttcatggat agctctcttg cgtatcaagg tgccggacgt
     3961 gacatgaata tggaacaagt tttacaagtg aatttatatg cgattgagga tacattgcct
     4021 gaccggacgt actatctcga tgtgcctgcc gaagtcggtt tagctagaat cgccgctaat
     4081 aagggccgtg aagtcaatcg cttggataaa gaagatatta cctaccacga aaaagtccaa
     4141 gctggctacg aaaaagtcat caacatgttc ccggaacgtt ttatgcgagt ggacgctaca
     4201 aagacaccag aagaaatcac agaaactatt ttagcggaca ttttacgaca attagcctaa
     4261 catctagtgg gacttcaaca ccttgccaca agtgcatatc gctctttaaa atggcgtttg
     4321 tttgctataa tagaaaaaaa gatagatttt taggaagggt tgatttcttt gaaactgata
     4381 tttgcaatcg tccaagacca agatagcaac cgtttgtctg acgcacttac aaaaggcaat
     4441 ttcggtgcga ccaagttagc tacaactggt ggatttttaa aagcaggcaa caccacattt
     4501 atcatcggta cagaagatga acgtgtagaa gatgccctag cgataatcaa ggaaaactgt
     4561 aaagcacgcg aacaaatgat gacaccatcc gcttccttag gtgtgacggt agatacgtat
     4621 gtgccttacc caatcgaagt acaagttggc ggcgcaagcg tgtttgtaat gccggtggaa
     4681 agtttccatc atttttaaaa cagagaaaaa gcaggtatgc gataagggct acctgctttt
     4741 tttatctata atgggaatta gatgctttaa actatcaatg cgagataaat gaattataac
     4801 caatagactc tgctattcag attgtcatta gaatctgttt aatttaataa aaaaaccgca
     4861 gacaaagcaa tttctcgctt tatccgcagt ttctgaccta tctcgctcat gaggtaggct
     4921 ttttacattc acttaatcgt caatttctgt ccaacatgaa tcatgttgct tgttaacttg
     4981 ttccaagctt taatattatc tacagttgtt ttatattgtc tagaaatggc ccataaagag
     5041 tcgccttttt tgacggtgta tgtttttact gtggaattac ttggtttatt tgtgcttggt
     5101 tttgcggtat ttgtgtttgt agtagttccg gcgctaactt taagtttttg tcctgggtaa
     5161 atgaaatcgg attttaagtt gttccaggat tttaggttag caatagttac tttgtggttg
     5221 ttagcgattc tccaaagtga gtcacctttt gctaccgtat aaactttagc gttcgtgttc
     5281 gtatttgtgc ttggtttgga tgtattcgtg tttgtgctcg gtttagaagt atttgtgtta
     5341 gaagtagaac cggcacttac tttaagtttt tgacctggat aaatgaaatc ggatttcaga
     5401 ttgttccagg attttaggtt agcaatagtt actttatggt tgttagcgat tctccaaagc
     5461 gagtcacctt ttacaactgt gtatacttta gcgtttgtgc tagtgcctgt acttggtttg
     5521 gatgtacttg ttcctgtgct cggtttcgat gtattcgtat ccgatgtagt ggaaccagca
     5581 cttactttaa gtttttgccc tgggtaaatg aaatcagatt taagattatt ccaagctttt
     5641 aggttcgcga cggttacttt atggttatta gcgattctcc aaagtgagtc cccttttaca
     5701 actgtgtaaa tttttgcatt ggaggtgttt ccggtgttgc tagaatttcc agtgttacca
     5761 gtacttccgg agtttccgcc agttgttttg ccactgtcat attgggttaa attatatcgg
     5821 ctaatcaagt catttaattt cgttgcatag gctgtgtctg ttgcgtacgt tccagttaag
     5881 gctttcgttg cgtctttgta ggaagtagtg ttgcttttcc aaactttgga gtagtaattt
     5941 gggttccagc ttgggccatt tcgaatgact tgtgcgtaat cttctaagga ttggtgataa
     6001 gacggatatt ttctaaattt agctgtgatt gtgtagtagt ttcctttacc atcatcttct
     6061 agtgtttgtt ttgtataaga ctggccgttg taagctcctt tgattccaaa aaggttatag
     6121 tttggagcag agcctaattc gctcgttcca taggcgcttt ctaaaatggc ttgggcgatc
     6181 atgacagatg cgtacaggtc attttctgct gcaatttggg aagaagaggc ttggattgtt
     6241 tggataaagc tttgaacagt tgctcccgaa cggagtgctg atttttgtaa taggttgtat
     6301 gtagctggtg tagaagagct tgttgcattg tcaggattgc taactgttgc gggttcagct
     6361 ggagcttttt ctacttgctt cgctgcagct tgattttctt ctgctgtctt tgtttgttct
     6421 tttgtttcag tttgcttagc ttcaacggtt ggttctgttg tgttttcagg agtggccgtt
     6481 gctggtgttt ctttagttgt gttagcttca gcgcttttag atgcttcgtc agcaggcgct
     6541 gtttcgtctg cgctaacgat tacttcgatg ccgggaacag tgatagaggt tgcgatggca
     6601 gtaaccccag caatcgttgc accagttttg aattttttac tttttttgtt tttcttttct
     6661 tcttgtaagg cttcaagaat acgttctttt ctcgtctttt gcatggtaag tcacttccga
     6721 ttctttaaat attctacatc cattattaca tacttcacat tacttatgat tgatatcgac
     6781 aaattgtaat taaattgtca aaaaggctcg tctttgttat actgaatata agcaagtgct
     6841 tacttagttg aacgggggta aaataatgat tacaaacgaa tccatcatgg atgcaacgct
     6901 ttgtatgatg gcgaaacacg gcatcaaagg ctccacaaca agacaattag cagaagccgc
     6961 tggaataaat gaagctacga tttttaaaaa atttaagagt aaagacaatc ttattcatat
     7021 gacgctggaa gtccaatttg aaagtatgaa ggcggaaatc aatcaatttt ttgataaaga
     7081 ttttgagagt gccaaggtgt ttctacgtca agcgagtcaa tttatttcgg atatttatga
     7141 aaaatatcgg gactttatgg tgatttctgt tcgagaaatg ggcagcaaag atatggaatt
     7201 tattgatcca tcgattgtgg aatatttgta tgaacgggtt aatcaaaaag taaaagaaat
     7261 ggtt
//
LOCUS       DABQVC010000139         7248 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.139,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000139 DABQVC010000000
VERSION     DABQVC010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7248
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.139"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..973
                     /locus_tag="IBJ56_002115"
     CDS             <1..973
                     /locus_tag="IBJ56_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HAM3418364.1"
                     /translation="DVAEKTGYSITTISRAINGNPNVSDKTKKKIFAAMKELNYYPNN
                     IAQQFRGQGTKMIGVVISFITNPFFAYLVDAIERYLSHRGYQVVMLQTLENPAKELQF
                     IEMLQKKQLDGLIMANLENDTEEIKSLVESGKIVLCNRYLGNENLTIINIDETKAAYQ
                     ATNYLIKCGYKRLAYCTGGIKNKNDYRFKGFMQAVTENGLSFDESLYFEKLLTIKDGE
                     ELLVNILEEKSTLPDAIFSNGDTVAAGILYAAKKYGIAVPEELGIIGFDNQPIAEVLN
                     PALTTIEQPIKELGEYSAQVLLANLQGTSVPVAPDLETKLIIRETTK"
     gene            1111..2337
                     /locus_tag="IBJ56_002116"
     CDS             1111..2337
                     /locus_tag="IBJ56_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HAM3418365.1"
                     /translation="MKKLLLSISIIVGLSLLASCGVEKEYKPDIKVNEKNVSLKVWVD
                     LNQGDFYRKVVDDFKKDHPDKNYDITVIESESGRAQEYVQKDPEAAADVFITPNDRLG
                     QLVESGAVYQLTKYTDDIKKNNTPTSIQAATYQDKMYGFPVTAEAMFMYYDKRVFSED
                     DIKTFSGITSKGKLGINLAEAGADYRETPWFIANGTYLYGENGEDPYGTTFNTPEGVQ
                     VLNWIGELKNNPNVVAVNADEISALRSGKINAVFSGVWNKDAIREVLGENMGVAVYPK
                     ADFGSGQVDMMAFQGSGIYCVNAFTKSPLDAMELADYITNADVQEKAFKELGKIPSNL
                     EARTSSTVEKDDVAKAVIDMTSGKHSVLMPKIPEMNVFWQHMNPLLVDTYKGKIKKED
                     YPEALDKLVKDITPAK"
     gene            2355..3692
                     /locus_tag="IBJ56_002117"
     CDS             2355..3692
                     /locus_tag="IBJ56_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3418366.1"
                     /translation="MMVKKNYFNIFKNGSVSTRLSYVIMGAGNLAHKQIAKGLLFLFS
                     ELAFLFFLVFYGITLIQGMATLGTVNQSWNFDKSLGIMVRTPGDNSMLMLIYGIMTVV
                     ICVLFLFLYLANIRSACQVEGFQRENKKIPTFKEDLKSLLDNKFHVTLLTIPMIGVVV
                     FTIMPLVYMISLAFTNYDHEHLPPRNLFGWVGFVNFKNVLNGDISSTFFPVLGWTLIW
                     ALLATATCFFFGVLLALLINHKGVKFKKFWRTIFVITMAVPPFVSLLVMQNLLHAAGP
                     LNTMLLNWGIIAEPIPFLTDALLAKVSVIFVNMWIGIPVTMLIATGILMNLPKDQLEA
                     ARMDGGNSFHLFRYITFPQILTVMLPSLIQQFIGNINNFNVIYLLTGGGPSNSNFYGA
                     GDTDLLVTWLYKLTVEAADYNLASVIGIVTFILSAAFSLFAYTRTNSYKEGSN"
     gene            3694..4524
                     /locus_tag="IBJ56_002118"
     CDS             3694..4524
                     /locus_tag="IBJ56_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAM3418367.1"
                     /translation="MKRATVWPNLLLIVLGCIWIFPIIWIVLTAFRAESGQFVSYIFP
                     KEYTLDHFAYLFENHENFPFMLWVKNTMIVAVCSCLLSTFITVSMAYVLSRLRFRFKK
                     TMLKTALVLNMFPAFMSMIAVYYILKAFGLTQSLTALVLIYSSTAALTFYIAKGFFDT
                     IPKSLDESAMMDGATKLSIFTKITLPMSKPIIVYTALMAFMLPWMDFIFAKVIMGDNV
                     PKYTVSIGLYSMLNQTTANTMYTTFAAGCILIAVPITILFIYLQKYYVEGITSGAVKG
                     "
     gene            4539..6236
                     /locus_tag="IBJ56_002119"
     CDS             4539..6236
                     /locus_tag="IBJ56_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HAM3418368.1"
                     /translation="MEITETKEWWKESVVYQIYPRSFQDSNGDGIGDIRGIIERLPYL
                     KDLGINVIWLCPVYKSPMDDGGYDISDYYEIDPMFGTMSDMDELIEKAEKLGIKILMD
                     LVVNHTSDEHEWFEKAIADPKSKYRDYYIFREGVNGNPPNNWRSYFGGSAWEAVPGEE
                     NMFYLHAFSKKQPDLNWENIVVRNECIQMINWWLEKGLGGFRIDAILNLKKRIEYGTF
                     PADGEDGLVFIGHWILNQPGIEEWLKEIDERTFKKHNAFTVAEADVPEERLSEFIGEN
                     GHFRMVFDFSYTDIDTPETGEWFKNSEWTVKELKEKIITNELVTQRNGWGAKYLENHD
                     QPRSINKYLPQEYQDDRSKKMLGTLFMMLHGTPFIYQGQEIGMSNTRMESIDDYNDIA
                     THDQYHRAILSGMSPEEALEGMYRRSRDNSRTPMQWNNQKNAGFSDSDEIWLKANPNY
                     LDINVEQEQIDDNSVLNFYKKLIQLRSDSSKYKEVAVYGELLPVESSDEVIAYKRKTD
                     DAELLIIVNFSDSENQLCIEGTYEQVLANVALPEMVENVLEIPAYTGAVFSRVLEVD"
     gene            6237..>7248
                     /gene="gtfA"
                     /locus_tag="IBJ56_002120"
     CDS             6237..>7248
                     /gene="gtfA"
                     /locus_tag="IBJ56_002120"
                     /EC_number="2.4.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016183710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HAM3418369.1"
                     /translation="MQIKNKAMLITYSDSLGKNMEELSKVMETYFEDAVGGIHLLPFF
                     PSTGDRGFAPSDYTTVDSDLGSWEIIEKLGEKYYLMFDFMINHISRESLFFQDFKKEH
                     LNSKYKDMFIRINDFFPPGRPNEKDLDLIYKRKDKAPFQEVEFADGGTELVWNTFGEE
                     QIDLDVTAEVTKEFIRQTIKNMAAHGCSILRLDAFAYAIKKLDTNDFFVEPEIWDLLD
                     EVKAEAAKYDMELLPEIHEHYSIQMKIANHDYYIYDFALPMVMLYSLYSGRVERLAKW
                     LEMSPMKQFTTLDTHDGIGVVDARDLLTDEELDYTSAELYKIGANVKKIYSSEKYNNL
                     DIY"
BASE COUNT         2351 a         1035 c         1572 g         2290 t
ORIGIN      
        1 agatgtagca gagaaaacgg gctattctat aactactatt tctcgagcaa ttaatggtaa
       61 tccaaatgtt tcagataaaa caaaaaagaa aatttttgct gcgatgaaag aactgaatta
      121 ttatcctaat aatattgctc aacaatttcg agggcagggg actaagatga ttggtgttgt
      181 gatttccttt ataaccaatc ctttttttgc gtaccttgtt gatgcgattg aacgctatct
      241 atctcacaga gggtatcagg ttgtcatgtt gcaaacttta gaaaatcctg caaaagaatt
      301 acaatttatc gagatgttac aaaagaaaca gctagatgga ttgattatgg ctaacttaga
      361 aaatgataca gaagaaatta aatcactcgt tgaaagtggc aaaattgttc tttgtaatcg
      421 ttatctggga aatgaaaatt tgacgattat taacattgat gaaacgaaag cggcttatca
      481 agcaacgaat tatttaataa agtgcggtta taaacgcctt gcctactgta ctggtggtat
      541 taaaaataaa aatgattacc gttttaaagg attcatgcaa gctgtaacag aaaatggact
      601 ttcttttgat gaatcattgt attttgagaa gttattaacc attaaagatg gcgaagagct
      661 tctagttaat attttagaag agaaatctac tctgccggac gcaatttttt caaatggtga
      721 tacggttgct gctgggatat tatatgctgc aaaaaaatac gggatagcag tgccagagga
      781 gctaggaatc ataggttttg ataatcaacc tatagcggaa gttctgaatc cggcgttgac
      841 aactattgaa caaccaatta aagaacttgg tgaatattcg gcgcaagttc tattggctaa
      901 tttacaagga acgagtgtgc cggtagcgcc agaccttgaa acaaaactaa taataagaga
      961 gactaccaag taaattctct cttattattt ttatgaaaac ggttgacatt ttataagata
     1021 attgatatta tttttacgat atatgaaacc gcttaaacta aaatgacaac cggttgtcat
     1081 tttaagtgaa gataaggaga atgttaaagt atgaaaaagt tacttttgtc catcagtatt
     1141 attgtcggtt taagtttgtt ggctagttgt ggtgtagaaa aggagtacaa gccagatata
     1201 aaagtaaacg agaaaaatgt ttctttaaaa gtttgggtgg atttaaatca gggagatttt
     1261 tataggaaag tagtagatga ttttaaaaaa gatcatcctg ataaaaatta tgacattacg
     1321 gttattgaat ctgaatctgg gcgagcacaa gaatatgttc agaaagatcc agaagctgcg
     1381 gcggatgtat ttataactcc gaatgaccgt ctaggacaac tggtagagtc tggtgcggtt
     1441 taccaattga caaagtatac agatgatatt aagaaaaata atacaccaac ctccattcaa
     1501 gctgctacat atcaagataa aatgtatggt ttccctgtga cggcggaagc gatgtttatg
     1561 tattatgata agcgcgtttt ttcagaggat gatattaaaa ctttttctgg aataacgtct
     1621 aaagggaagc tcggaataaa tcttgcggaa gctggcgcgg attatcgtga aacaccttgg
     1681 tttattgcaa atggtacata tctttatggt gagaacggcg aagatcctta tgggacaacc
     1741 tttaacactc cagaaggcgt ccaagtattg aactggattg gtgagctgaa aaataatcct
     1801 aatgttgtcg ctgtaaatgc agatgagatt agtgcgctta gatccggtaa aataaatgcc
     1861 gtttttagtg gggtttggaa taaagatgcg atacgagagg ttttaggtga aaatatggga
     1921 gtggcagtat atccgaaggc cgattttgga agtggtcagg tagatatgat ggctttccaa
     1981 ggaagcggga tatactgtgt gaacgcattt actaaatcgc cattagatgc gatggaacta
     2041 gctgattata ttactaatgc ggatgtgcag gaaaaagctt ttaaagagtt agggaaaatt
     2101 ccgagcaatt tagaggcacg aactagttct acagtagaaa aggacgatgt ggcgaaagca
     2161 gttattgata tgacatccgg aaagcactcc gttttaatgc cgaaaatacc tgaaatgaac
     2221 gttttttggc aacatatgaa cccgctatta gtagatactt ataaaggcaa gattaagaaa
     2281 gaagattatc cagaggcgct cgataaatta gtcaaagata ttacaccagc gaaataggaa
     2341 agtaggttaa gtatatgatg gttaagaaga attattttaa tatttttaag aatggttctg
     2401 tttctacgag attatcttat gtaattatgg gggctggtaa tttggcccat aagcaaattg
     2461 cgaagggact tctatttctt tttagtgaac ttgctttctt gtttttcctt gtgttttatg
     2521 gcattacctt aattcaaggt atggcgacat tagggacagt taaccaatcg tggaattttg
     2581 ataagagttt aggtattatg gttcgaacac cgggcgataa ttccatgctg atgctaatat
     2641 atgggattat gacagttgtt atttgtgtac tatttctctt cttgtacctt gctaatatta
     2701 gaagcgcttg ccaggtggag ggcttccagc gggaaaataa aaaaatccca acatttaagg
     2761 aagacttaaa gagtttgcta gacaataaat ttcatgtaac tttactgacg atcccgatga
     2821 ttggggttgt ggtgtttacg ataatgccac ttgtttatat gatttctttg gcttttacca
     2881 attatgatca tgaacattta ccgccaagga atttatttgg atgggtagga tttgttaact
     2941 ttaaaaatgt gctaaatggt gatatttcca gtacgttctt tccggtgctt ggatggacac
     3001 ttatttgggc gcttttagct actgctactt gtttcttttt tggcgtattg cttgcacttc
     3061 ttattaatca taagggtgtt aaattcaaaa agttttggcg cactatcttt gttataacta
     3121 tggcggtacc tccgtttgtg tcacttctcg taatgcagaa cttgttgcat gcagcaggac
     3181 cgcttaatac gatgttactt aattggggaa ttatagctga gccgatacca tttttgacag
     3241 atgctttgct agcaaaggta tccgtcatat ttgtcaatat gtggattggg attccggtaa
     3301 ctatgttaat cgccacgggg attttaatga atctaccgaa agatcaattg gaagcggcgc
     3361 gaatggatgg aggtaacagt tttcatttat ttagatacat aactttccct caaatcttaa
     3421 cggtgatgtt gccaagtctg attcaacaat ttattggcaa tataaataac tttaatgtga
     3481 tctatctctt gactggtgga ggaccttcga atagtaactt ctatggtgct ggggatacgg
     3541 atttgctcgt gacatggctt tataaattaa cagtagaagc tgcggattat aatttagctt
     3601 cggttattgg gattgtaaca ttcattctta gcgcggcatt ctcgttattt gcctacacac
     3661 gtacaaattc ttataaagaa gggagcaact gaaatgaaaa gagctacagt atggcctaac
     3721 ctattgttga tagtgctcgg gtgtatctgg atattcccga ttatctggat tgttttgaca
     3781 gcttttagag cggaaagtgg acaatttgtt tcgtatatct ttccgaaaga atatacgcta
     3841 gatcattttg cgtacctatt tgaaaatcat gaaaattttc cttttatgtt atgggttaaa
     3901 aatacaatga ttgttgcggt gtgttcctgt ttattgagca cttttataac cgtttcgatg
     3961 gcttatgtgt tatctagact tcgctttaga tttaaaaaga caatgttaaa aacagcgcta
     4021 gttttaaata tgtttcctgc ttttatgagt atgatagcag tttactatat tttaaaagca
     4081 tttggattaa cgcaatctct aacggcgctt gtgttaattt attcatctac agctgcatta
     4141 actttttata ttgcaaaagg attttttgat acaataccaa aatctttgga cgaatcggca
     4201 atgatggacg gggcgacgaa attaagtatc tttacaaaaa taactttacc aatgtctaag
     4261 cctattattg tatacacagc tttaatggca tttatgttgc cttggatgga ttttattttt
     4321 gctaaagtga ttatgggaga caatgtgcct aaatatacag tgtcgatagg tttatattcc
     4381 atgttgaatc aaacaacggc aaatacaatg tatacaacgt ttgcggctgg ctgtatattg
     4441 attgcggtac caattacaat actgtttatt tatttgcaaa aatattatgt tgaaggcatt
     4501 acaagtggtg ctgttaaagg ataggagata gattaatagt ggaaataaca gaaacgaaag
     4561 aatggtggaa agaatcggta gtgtaccaaa tctatccgcg tagttttcaa gattcaaatg
     4621 gggatggtat tggagatatt agaggaatta tagaacgact tccttatttg aaagatttag
     4681 gtattaatgt gatttggctt tgtccggtct ataaatcacc tatggatgat ggtggttatg
     4741 acatttctga ttactatgag attgatccaa tgtttggaac gatgagtgat atggatgaat
     4801 taattgagaa ggcagaaaaa ttaggaataa aaatattgat ggatttggtg gtaaaccata
     4861 catctgatga acatgaatgg tttgaaaaag caatagctga cccaaaaagt aaatatcgag
     4921 attattatat tttccgagag ggtgtaaatg gaaacccgcc taataattgg cgttcttatt
     4981 ttgggggatc tgcgtgggaa gccgtaccag gtgaggaaaa catgttttac ctacatgctt
     5041 tttctaaaaa acagccagat ttaaactggg aaaacattgt agtgcgtaat gaatgtatcc
     5101 aaatgattaa ctggtggctt gaaaaaggtt taggtggctt tagaattgat gctattttaa
     5161 atttgaagaa aagaattgag tacggtactt tcccagcgga cggggaagat ggcttggttt
     5221 tcatcggtca ttggatttta aatcagccgg gaattgaaga gtggctcaag gagattgacg
     5281 aacggacatt taaaaaacat aatgcattta ctgtggctga ggcggatgtg cctgaagaaa
     5341 gactttctga atttataggt gaaaatggtc atttccgtat ggtgtttgat tttagctata
     5401 cagatattga tactcctgaa acaggcgaat ggttcaagaa ttcagaatgg acagtaaaag
     5461 aattaaaaga gaaaataatt accaatgaac tggtgacaca gcgaaatggt tggggggcaa
     5521 aatacttaga aaatcatgat caaccgcgtt cgataaataa gtatttacct caagaatacc
     5581 aagatgatcg tagcaaaaaa atgctaggca cgttatttat gatgttgcac ggtacgccgt
     5641 tcatttatca aggacaagag attggcatga gtaatactcg gatggaaagt atagatgatt
     5701 ataacgatat tgcgacgcac gatcaatacc atcgcgcaat tctctctgga atgagtccgg
     5761 aagaagcact tgaaggaatg tatcggcgta gtagggataa ttcaagaaca ccgatgcaat
     5821 ggaataatca aaagaacgct ggtttttccg actcagatga aatttggttg aaagcaaacc
     5881 ctaattacct tgatattaac gtagagcagg aacaaatcga tgataattcc gtattgaatt
     5941 tttataagaa attaatccag ttaagaagtg attctagtaa atataaagaa gtggctgttt
     6001 atggagaatt actgccagta gaatcaagtg atgaagttat tgcttacaaa cgtaaaacag
     6061 atgacgctga gctcttaatc atcgtgaatt tttctgattc tgaaaatcaa ttatgcattg
     6121 aaggtactta tgaacaggta cttgctaatg tagcgttgcc agaaatggta gaaaatgtcc
     6181 ttgaaatacc tgcatataca ggtgccgttt tctcaagggt tttggaggta gactgattgc
     6241 aaattaaaaa taaagctatg ttaattactt attctgatag tttagggaaa aatatggaag
     6301 aattatccaa ggtgatggaa acttattttg aagatgctgt tggcgggatt cacttattgc
     6361 cgttctttcc atccactgga gatcgagggt ttgcgccaag tgattacaca acagtagata
     6421 gcgacctagg ttcttgggaa ataatcgaga aattaggcga aaagtattat ttaatgtttg
     6481 attttatgat taatcacatt tctcgcgaat cactcttctt tcaagatttt aaaaaagagc
     6541 atttaaactc aaagtataaa gatatgttta ttcgtatcaa tgatttcttt cctccgggta
     6601 gaccaaatga aaaagactta gatttaattt ataagagaaa agataaggcg ccttttcaag
     6661 aagttgaatt tgctgatggg ggaacggaat tagtttggaa tacttttggg gaagaacaaa
     6721 ttgatttaga tgtgacagcc gaagttacaa aagaatttat tcgtcaaacg ataaaaaata
     6781 tggctgcaca tggttgttct attttgcgtc ttgatgcctt tgcttatgca attaaaaaat
     6841 tagatacaaa tgattttttt gtagaaccgg aaatttggga tttactggat gaagtgaaag
     6901 cagaagcggc caaatatgac atggaattat taccagaaat tcatgaacat tattccatcc
     6961 aaatgaaaat cgcgaaccat gattattata tctatgattt tgcgttaccc atggtgatgc
     7021 tgtactcgtt atatagtggc cgagtggaac gtttagctaa atggttagaa atgagtccga
     7081 tgaagcaatt tactacttta gatacgcatg atggcattgg cgttgtggat gcacgcgatt
     7141 tattaacaga tgaggaactc gattatactt cagcagaatt atacaaaata ggagctaatg
     7201 ttaaaaagat atattcctct gaaaaatata ataacctgga tatttatc
//
LOCUS       DABQVC010000140         7204 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.140,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000140 DABQVC010000000
VERSION     DABQVC010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7204
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.140"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(163..1656)
                     /gene="glpK"
                     /locus_tag="IBJ56_002121"
     CDS             complement(163..1656)
                     /gene="glpK"
                     /locus_tag="IBJ56_002121"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HAM3418370.1"
                     /translation="MEKKYILALDQGTTSSRAMIIDEEGEVIGVAQEEFDQIFPKPGW
                     VEHNANEIWASILAVIAGVLLKTNISSKEIAGIGITNQRETTVIWDKESGNPIYNAIV
                     WQSRQTEDICKQLRKDGYEDTIRSKTGLLIDPYFAGTKARWILDHVDGAQERAEKGEL
                     LFGTIDTWLVWKLTGGRAHITDYSNASRTLLYNIYDLEWDDELLKMLNIPKAMLPEVR
                     PSSEVYADTVPYHFFGEEVPVAGIAGDQQAALFGQGCFEKGMAKNTYGTGCFLLMNTG
                     EKAVRSENGLLTTLAWGIDGKVEYALEGSIFVAGSAIQWLRDGLRMVRQSSDSENYAS
                     RIESSDGVYVVPAFVGLGAPYWDSDVRGAVFGLTRGTEKEQFIRATLESLAYQTRDVL
                     YAMEQDSGISLKTLRVDGGASANNFLMQFQSDILGVPVERPENKETTVLGAAFLAGLA
                     VGVWKDKNEIKKHWKLDKRFEVEMKDEQREDLYEGWHKAVKAAQAFK"
     gene            complement(1731..2549)
                     /locus_tag="IBJ56_002122"
     CDS             complement(1731..2549)
                     /locus_tag="IBJ56_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HAM3418371.1"
                     /translation="MIDTSLATQFLGEVIGTAILIILGAGVVAGVSLKRSKAENGGWV
                     VITLAWGLGVTMGVYVSGYMSMAHLNPAVTIGMALAGAFPWNYVLPYILAQFIGAFIG
                     ATLIWLHYYPHWKQTEDKPTKLGVFATAPAIRHFTSNFFGEALGTFILVFGLLSLGAN
                     SFSDGLNPLVVGALIVAIGMSLGGTTGYAINPARDLGPRIAHFVWPISGKGGSDWGYS
                     WVPVIGPIMGGALGALGYNAIINGELGMWFWVFAVLFVLILILTMQLDKKKDLA"
     gene            complement(2915..3205)
                     /gene="rpmA"
                     /locus_tag="IBJ56_002123"
     CDS             complement(2915..3205)
                     /gene="rpmA"
                     /locus_tag="IBJ56_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HAM3418372.1"
                     /translation="MLKFDIQHFAHKKGGGSTSNGRDSESKRLGAKRADGQFVTGGSI
                     LYRQRGTKIYPGTNVGRGGDDTLFAKTDGVVRFERMGRDKKKVSVYPEVQEA"
     gene            complement(3219..3536)
                     /locus_tag="IBJ56_002124"
     CDS             complement(3219..3536)
                     /locus_tag="IBJ56_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal-processing cysteine protease Prp"
                     /protein_id="HAM3418373.1"
                     /translation="MIQVDVMREDNQIISFTMSGHADFAEHGSDLVCAGASSIAFGMV
                     NAISEVRDFEPVIEESEGYLYYSVPADYVGDDVVQILLTGMENQLRSLAYSYPDHIKI
                     NSK"
     gene            complement(3555..3863)
                     /gene="rplU"
                     /locus_tag="IBJ56_002125"
     CDS             complement(3555..3863)
                     /gene="rplU"
                     /locus_tag="IBJ56_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HAM3418374.1"
                     /translation="MYAIIETGGKQIKVEAGQEIYVEKLAGEVGDVVTFDKVLFVGGD
                     SAKVGVPFVEGATVTAKVEKQGRAKKLTVYKYKPKKNYHKKQGHRQPYTKLTIDAINA
                     "
     gene            complement(4020..5381)
                     /locus_tag="IBJ56_002126"
     CDS             complement(4020..5381)
                     /locus_tag="IBJ56_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HAM3418375.1"
                     /translation="MKKLVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGF
                     IQKIDRKVEAAFVDLGNNNKGFIHLKDIPESYDKTQGAKIPVQIVREGSATKLPLLTG
                     ILEFSGDLLIYLYGKEYISISKRIGDKIRLKKITETMVEENEAVIIRSNAEFATKEQL
                     QQALVQARDKHQTLLKEASKRKKPGLLLSVASGILNSTKQFIQRYAPSEVITDDFEFA
                     KMLEMLWPDKQIIIKKSADLFADLGIKAQIDRLARPVVHLSNGSSLFIEKTEAMWVVD
                     VNSGKFKGTTAKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIGGMSELGYTALYE
                     ALEIKTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVCYATGHVASKETL
                     AFELERELSGIMQNEPSNIQIITTEDVLDTFLDLNTLSNAPIDWEVADERVPFYQIGR
                     VEN"
     gene            complement(5434..6234)
                     /gene="minD"
                     /locus_tag="IBJ56_002127"
     CDS             complement(5434..6234)
                     /gene="minD"
                     /locus_tag="IBJ56_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HAM3418376.1"
                     /translation="MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLR
                     NLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFLLPAAQTTDKNAVSGEQ
                     MVDLINQLRPDYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLL
                     EKEDIEPPKLIINRIRTQMMMNGDVMDIDEITTHLSIELLGIIIDDDEVIRSSNSGDP
                     VAMLPNNRASQGYRNIARRILGESIPLMSIETKKAGFFARLKQLFSGK"
     gene            complement(6237..6914)
                     /gene="minC"
                     /locus_tag="IBJ56_002128"
     CDS             complement(6237..6914)
                     /gene="minC"
                     /locus_tag="IBJ56_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HAM3418377.1"
                     /translation="MKKNVQIKGTKDGISIFLSDKASISELQQELTQLLADQKQNPYS
                     GEKLEVQVQIGNRLFSEEEEREISTIIHENSQMKISAFYSNVMSKDEAKKWKENDQIF
                     SMATIIRSGQVVQVPGDFLLIGDVNPGGQIRSNGNVFVLGNIKGIIHAGFEGNGNAIV
                     AGKFLYPSQVRIADKVYGFDSEDYKEVTETDLFSAFVNDAGEIVIDGIHKIRKIRPEI
                     SNFQGGR"
     gene            complement(7092..>7204)
                     /locus_tag="IBJ56_002129"
     CDS             complement(7092..>7204)
                     /locus_tag="IBJ56_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HAM3418378.1"
                     /translation="VFIDQRLWTTILINLAFFLVVFFPFRLFLDRLVKSE"
BASE COUNT         2183 a         1606 c         1091 g         2324 t
ORIGIN      
        1 acataatttt tatattctcc cgttccttaa aagtcttatc tttcattata acgaataaac
       61 tatacatctg tcactatatt tatttctatt tccaaatatt tatttgtttt acataacaaa
      121 aaagcgccaa atgcttttac acatttggcg catcttaaaa ttttatttaa aggcttgtgc
      181 agctttgaca gctttatgcc aaccttcata taaatcttct ctttgttcat ctttcatttc
      241 tacttcaaaa cgtttgtcta gtttccaatg ttttttaatt tcgtttttgt ctttccaaac
      301 gcctaccgca agtccagcta agaatgccgc acctagaacg gttgtttctt tgttttctgg
      361 acgttctacc ggaacgccta gaatatcgga ttggaattgc attaagaagt tattagcaga
      421 agccccgcca tccacacgta acgtttttaa gctaatacca gaatcttgtt ccattgcata
      481 aagcacgtct cttgtttgat aagcaagaga ttccaatgtc gcacggataa attgttcttt
      541 ttcggtacca cgagttaatc caaaaacagc accacgaaca tcggaatccc agtaaggtgc
      601 gcctaaacca acgaatgctg gtacaacata tacaccatca ctagattcaa tccggctcgc
      661 atagttttca gaatcgcttg attgacgaac cattcgtaac ccgtcacgta accactgaat
      721 agccgaacca gcaacgaata tactaccttc aagtgcatat tctacttttc catcaattcc
      781 ccaagctagt gttgttaata agccgttttc agaacggact gctttttccc cagtgttcat
      841 tagtaagaaa caaccagttc cataagtatt tttcgccatc cctttttcaa aacaaccttg
      901 tccgaataaa gcggcttgtt ggtcaccagc aatacctgca accggcactt cttcaccaaa
      961 gaagtgataa ggcactgtgt ccgcatacac ttcagaggaa ggacgaactt caggtaacat
     1021 tgcttttggg atattaagca tttttagaag ttcatcatcc cactctaaat cgtaaatatt
     1081 ataaagaagt gtccgagaag cattggaata atctgtaata tgagcacgac caccagttaa
     1141 tttccaaact aaccaagtat cgattgttcc gaaaagaagt tctccttttt cagcacgttc
     1201 ttgcgcacca tctacatggt cgagaatcca gcgagctttt gtacccgcaa aatacggatc
     1261 aatcaaaaga ccagttttag aacgaatggt atcttcatag ccgtctttac gtaattgttt
     1321 acaaatatct tctgtttgac gagattgcca aacaatcgca ttataaattg gatttccgct
     1381 ttctttatcc caaataacag tagtttcacg ttggtttgta ataccaatcc cagcaatttc
     1441 tttagaagaa atatttgttt tgagtaatac gcctgcaata acagctaaaa tcgaagccca
     1501 gatttcattg gcattatgtt caacccaacc tggtttagga aaaatttgat caaattcttc
     1561 ttgtgcaacg ccaattactt ctccttcttc gtcaataatc atcgctcttg aactcgttgt
     1621 tccttgatcc agtgctaaaa tatatttctt ttccatgtaa aattcctcct ctagttttaa
     1681 gtacaacgaa agcccgaaga ccttcgcttg gagctagtta ttattctagc ttatgctaaa
     1741 tcttttttct tgtcgagttg catcgttaaa ataagaatta aaacaaataa tactgcgaac
     1801 acccagaacc acattcctag ttctccgtta ataatggcat tataccctaa agcacctaat
     1861 gcaccgccca tgattggtcc aataactgga acccatgagt aaccccaatc agatccacct
     1921 ttgccagaaa tcggccaaac aaaatgcgca attctcggtc caaggtcacg agctgggttg
     1981 atggcataac cagtagttcc accaagagac atcccgatag ctacgattaa tgcgccgaca
     2041 acaagtggat ttaatccatc tgaaaaagaa tttgcaccta gtgatagtaa tccaaatact
     2101 aaaataaaag tacctaatgc ttcaccaaaa aagttagatg taaaatggcg aatagctggc
     2161 gccgttgcaa aaacacctag ttttgttggt ttgtcttctg tttgtttcca gtgaggatag
     2221 taatgtaacc atattagcgt tgccccaata aatgctccga taaactgagc aagaatatat
     2281 ggcaatacgt aattccacgg gaaagcacct gcaagcgcca taccaatagt tacagcaggg
     2341 ttaagatggg ccatactcat atatcctgaa acatatacac ccattgtaac acctagcccc
     2401 caagctaaag taataacgac ccagccgcca ttctccgctt tagatctttt cagtgaaaca
     2461 cctgctacga caccagcacc taaaataatt aggatagccg taccaataac ttcacctaga
     2521 aattgtgttg ctaaacttgt gtcaatcatc ttttccaact ccttcttctt gcttatttgt
     2581 atcaccggaa ttttaacact tactagtccc cttacattcc gattatcaat taacttcaaa
     2641 aaaagaatga caatcaaaac gtaggcacac tagtaccctt gcatcgtttc gattgtcatc
     2701 tcttctcctg acattttaat taacttgagt ctatttaatc atatcaagaa aacgctgtca
     2761 atcaaacgac ttgtcctatt tttcacaatg tctcttcatc tgcctcttta catttacccc
     2821 aattcacgag agttataacc ctttttaaaa gaaattaatt cacaaagatg aaaacacaaa
     2881 aaaaccgcca caagtggcgg ttttaaattt gtatttaagc ttcttgtact tcaggataaa
     2941 cgctaacttt tttcttgtcg cgtcccatac gttcgaaacg tacaacgccg tcagttttag
     3001 cgaataaagt atcatcgccg ccacgtccta cgttagttcc tggatagatt ttagtaccac
     3061 gttgacggta aaggatagat ccaccagtaa caaattgtcc gtccgcacgt tttgcaccta
     3121 aacgttttga ttcagagtca cgtccgttag aagtcgaacc gccacccttt ttgtgcgcaa
     3181 aatgttgaat atcaaatttt aacatgaaat tccacctcct atttggagtt aatttttata
     3241 tgatcaggat agctgtacgc taatgacctt agttgatttt ccatccctgt aagcaagatt
     3301 tgcaccacgt catctccgac ataatcagca ggcacagaat agtaaaggta accctccgac
     3361 tcttctatta caggctcaaa atcacgtact tccgaaatag cattcaccat tccaaaagca
     3421 atagaggatg ctcctgcaca taccaaatca ctgccatgtt cggcaaaatc ggcgtgtcca
     3481 ctcattgtaa aagaaattat ttggttgtct tctcgcataa catcgacttg aatcattgtt
     3541 ttcgtccttt caaattaagc attgatagca tcaatagtta attttgtgta aggttgacga
     3601 tgaccttgtt ttttgtggta gttctttttc ggtttatatt tataaactgt caatttcttc
     3661 gcacggcctt gtttttcaac tttagctgtt acagttgcgc cttccacgaa tggaacgcca
     3721 actttagcgg aatctccacc tacgaataga actttgtcaa aagtaacaac atcaccaact
     3781 tcacctgcta atttctcaac atagatctct tggcctgctt ctactttgat ttgtttccca
     3841 cctgtttcaa taattgcgta catacttgca cctcctcata tactaagact cgccatcaca
     3901 ggggatttac acgaagtaaa tacttgaccc agctctgtgc ggttgtagct tggtgcgcta
     3961 caaacataac agtaaaatga tagcataagc aagcagccta tgtcaaccaa ttgttgattt
     4021 tagttttcca cccggccaat ttgataaaac gggactcttt catccgccac ttcccaatca
     4081 attggcgcat tacttagcgt attcaaatct aaaaaagtat ctaaaacatc ttctgtcgta
     4141 ataatttgga tattgcttgg ctcattttgc ataatccctg aaagctctcg ttctaattcg
     4201 aaagcaagcg tctctttgga agccacatgg cccgtcgcat aacaaactgg acaaggcatc
     4261 gttgtcgttt ctaaaaagga ttgctgtttt ttgcgtctcg tcagttgtaa tagccctgac
     4321 tgcgataaag cagcaacttg tgttgtaata tattcttcgc gagttttgat ctctaacgct
     4381 tcataaagcg ctgtgtagcc caattctgac attcctccaa taaaatccac taatatcatc
     4441 ccactcatat tacgtaacct aatttgtcga aggatttcag gaactgcttt gagatttact
     4501 gattctactg ttttttcttt tgctgtggta cctttaaatt tacctgagtt tacatcaaca
     4561 acccacatcg cttctgtttt ttcaataaat aaagaagaac cattacttaa atgaaccact
     4621 ggtcgtgcga gcctatctat ttgagctttg atacctaggt ccgcaaataa atcagcgctt
     4681 ttctttatga tgatttgctt atccggccat agcatttcta gcattttagc aaactcaaaa
     4741 tcatccgtaa ttacttctga tggtgcgtat cgttgaatga actgtttcgt actatttaaa
     4801 attcccgaag ccactgataa tagtaagcca ggttttttcc gcttgctagc ttcttttaat
     4861 aatgtttgat gtttatctct cgcttgaacc aaggcttgtt gcaattgctc tttcgtcgca
     4921 aattctgcat tagatcgaat aattaccgct tcattttctt ccaccatggt ttccgttatt
     4981 ttctttaatc tgattttgtc tcctattctt ttagaaatag aaatatattc ttttccatac
     5041 aaataaataa gcaagtcacc agaaaattcc agtataccag ttaataacgg aagtttcgtc
     5101 gcgctgcctt cccgcacaat ttgaactgga attttagcac cttgcgtttt atcatagctt
     5161 tccggaatat cttttaaatg gatgaaacct ttgttattat tacctaaatc aacaaaagct
     5221 gcttccactt ttcgatcgat tttttgaata aatccataat aaatatcacc aacttgaact
     5281 ttttcagaag gtcgtacaat ttcaatatct attaacaaat catcttccat tgctgctatt
     5341 cgtttttcta taggagccgc acttactact agctttttca tacaatcacc ttttataaag
     5401 acccttcatc ttaaagataa agggtctaat tttttatttc ccgctaaaaa gttgctttaa
     5461 gcgagcgaaa aatcccgctt tttttgtttc aatcgacatt aaagggatag attctccaag
     5521 aatacgtcga gcaatattac gataaccttg tgaagcacgg ttatttggta acatagcgac
     5581 aggatcccca ctgttcgaag agcgaataac ttcatcatca tcaatgataa taccaagtaa
     5641 ttcaattgat aaatgtgtgg taatttcatc aatatccatt acatcaccat tcatcatcat
     5701 ttgtgtacga atacggttaa taattaattt tggtggctca atatcttctt tttccagtaa
     5761 accgataatt ctatctgcat cacgaactgc tgatatttct ggcgttgtaa ctacaattgc
     5821 tttgtctgca ccagcaacgg catttttata gccagtttca attcctgcag gacaatcaat
     5881 taaaataaaa tcatagtctg ggcggagttg attaattaaa tccaccattt gttcacccga
     5941 aacagcattt ttatcagtag tttgcgccgc tggaagcaag aaaagtaaat catcaaaacg
     6001 tttatcttta atcattgctt gatgaatttt acagcgacct tctaccacat ctactaaatc
     6061 ataaataatt cgattttcaa gacctaaaac aacatctaaa ttgcgaaggc cgatatccat
     6121 atcaatcaag cacactttct taccttgaag agcaagtgcc gttcccaagt tagcagttga
     6181 agtagttttt cctactccac ctttcccaga agtaatgact atagcttctc ccatgtttaa
     6241 cgccctcctt gaaaattaga aatttcaggt ctaatttttc ttatcttatg tattccatca
     6301 attactatct cacctgcatc atttacaaat gcagaaaaca aatctgtttc agtgacctct
     6361 ttataatcct cactatcaaa tccgtatacc ttatcggcaa ttctaacttg tgagggataa
     6421 agaaattttc ctgctacaat agcatttccg ttgccttcaa agccagcatg aataattcct
     6481 ttaatattcc ctagaacaaa tacattgcca tttgaacgga tttgtccccc aggattaaca
     6541 tcgccaatta gcaaaaaatc ccctggaacc tgaacaactt gtccagaacg aataatcgtt
     6601 gccatagaaa aaatttgatc attttctttc cattttttgg cctcgtcttt agacatcaca
     6661 ttactataaa atgcactaat tttcatttgg ctattctcat gaataatagt tgatatttca
     6721 cgttcttctt cctctgaaaa cagacggtta ccaatttgaa cttgcacctc taatttttca
     6781 ccagagtatg ggttttgttt ctgatctgca agcaattgag ttagttcttg ttgcaattca
     6841 gatatactcg ctttatcact aagaaaaata ctaatgccat cttttgtgcc tttaatttga
     6901 acattcttct tcatatacca tttcaccccg caacatttat actctagcct ttagtataca
     6961 ctaactcaaa ttaaatgata ataaaaaaat actttttttg aaaaaacagc ttgaaatcgc
     7021 aaactgtgga tattctccac agtcatactt tttcaagtaa tagcgacttc aaactgttaa
     7081 aattacgata gttattctga tttaaccaaa cgatcaagaa acaatcggaa tgggaaaaag
     7141 acaactaaaa agaatgctaa attaatcaaa atggttgtcc ataaacgctg atcaataaaa
     7201 actg
//
LOCUS       DABQVC010000141         7188 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.141,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000141 DABQVC010000000
VERSION     DABQVC010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7188
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.141"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(85..1740)
                     /locus_tag="IBJ56_002130"
     CDS             complement(85..1740)
                     /locus_tag="IBJ56_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3418379.1"
                     /translation="MHFLKKTLPIFAILTVLLLTACGNDNEKSTTKTSPDKIKFLETS
                     ELLTLNTTAEEDFASFTAQNQVFEGLYTLDQKDNFVPGVAGGMPEISADQTKYTIKLK
                     KNAKWSDGSQVTADDFVYAWRRAVDPKTAPGYSALFKDSIKNATEINEGKLPVTDLGV
                     VATDPTTLEITLKKPVPYFISLLSFETFFPQKESFVKKQGDKYGTDSAHTLYNGPFVM
                     KDWGGNITNKWTYAKNDQYWDKDNVKVNEIDVQVAKDINAGVNLYNTNEADRVPLSGD
                     FAKQYKDKKDFQTEKDALISYLRMNQKRDGKATPLANNSLRHALNLAVDKKQLTDRIL
                     GDGSFPANGLLPKDFVQNPTTGADFRTDSGDHLVYNKEEALKYWKQAQKELGTDKVTI
                     ELLGDDQETTKTIFAYLKAQFEDNLPGVTIKVKNMPSKSATQLTSDGNYDLSLAAWMP
                     DFKDPWTYSSLFLSDYFNNHMSYNSPAYDRLVKSTDTTLATKPEERWNAFVASEKVLL
                     DDDAAILPLYQHQTAVLQRTDITGVQKHAFGSPYSYKFIRVEK"
     gene            1963..2904
                     /locus_tag="IBJ56_002131"
     CDS             1963..2904
                     /locus_tag="IBJ56_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HAM3418380.1"
                     /translation="MKKWSFLVVTVLAFVLVLAGCGASNNKVSGDKDKLKVVTTFYPM
                     YDFTKNVAGDNASIEMLIDAGTEPHDYEPSAKDIAKIEAADVFVYNSEDMETWVPSVL
                     KSLDSKKLTVIDASKGIELVEGTEEEDHDHEHEEGHHHEHDPHVWLSPVLAEQEVTNI
                     QNGLTKADKTNADTYKKNAETYKEKLKTLDNKFKTAFEGAKQRDFVTQHAAFQYLAKE
                     YDLHQVAIAGLSPDQEPSPARLAELQKYVKENNISTIYFEEVASPKVAETLANETGAK
                     LEVLSPIEGITDKEQKKGMDYIAYMEQNLQALQKTIK"
     gene            2917..3621
                     /locus_tag="IBJ56_002132"
     CDS             2917..3621
                     /locus_tag="IBJ56_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HAM3418381.1"
                     /translation="MKYIDIANIGFKYESEPVLENISFQVSAGEFIILTGENGAAKST
                     LLRIILGILQPDKGSVTFAKKNADGGRLLTGYVPQQIASFNAGFPSTVLELVRSGRFP
                     NGKWFKRLTTKDHAHVEKALKSVEMWDYRHKRIGELSGGQKQRICLARMFATDPDILI
                     LDEPQTAMDKQSKIRFYDLLRHEAQVHGKAILMVTHDSEEMEDFVDKHIRLIRKEDVS
                     WKCFSMDLCKEPSKHQ"
     gene            3570..4376
                     /locus_tag="IBJ56_002133"
     CDS             3570..4376
                     /locus_tag="IBJ56_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HAM3418382.1"
                     /translation="MEMFLYGFMQRAFQASMIIAIIAPLLGVFLIIRRQSLMADTLSH
                     VSLAGVAFGLVLNVNPSVTTLIVVVIAALGIEYLRGVYATYSELSIAILMAGGLAVAL
                     VLMSLDQGGITTSVQQYLFGSIVTISKAQVQLLVILGIAIVVLFLVFKRFMFVLTFSE
                     DVAVAEGVPVRLISLLFSVVTGIAIAVIMPIAGALLVSALIILPAAIGMRISKGFLMC
                     VISAILIGLVGMFSGLVSSYQLGTPPGATITLMFIILFIISTVVLKMARK"
     gene            complement(4380..5060)
                     /locus_tag="IBJ56_002134"
     CDS             complement(4380..5060)
                     /locus_tag="IBJ56_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3418383.1"
                     /translation="MPKNLYNYQEFIRLSHEGKIAFEQIDVPKNASLLTEKIDIDNHI
                     YLVVDGYIALILNDGSQNPKIYSIQGKGTFLNYFTLLDRSNNHFNFKTLSGCSLYKYS
                     KADMEYFLSMFPENFGFQFFIMKNQTTHIYFKSLMASSPASEKLKTTFSNMALLHGVL
                     SDDDTVILPQAIKTSHLLSYSNLSKSCFYKDLQHLKTTNQIEKKEKSWIIHDQELYAM
                     IQNGQTSF"
     gene            5338..>7188
                     /locus_tag="IBJ56_002135"
     CDS             5338..>7188
                     /locus_tag="IBJ56_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HAM3418384.1"
                     /translation="MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKE
                     AGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRMIDEIKTTETPMDEITEDFRPLH
                     WAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQRVMSREELSVFVDDLLSQYA
                     IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGK
                     TMSTLFPGIKAMGEGKTDKLFYFTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKI
                     CFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEGYARKYTLCPFELSL
                     DVALFCDVIVCEYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKK
                     STVMQVKRGLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVL
                     KFTFVAKEWLPQNTQSELQVDVLDLYFESLRYTAIAEFYDERYVTQVTRNHRDLEIKQ
                     LCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFKQKNMHL
                     LVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDL"
BASE COUNT         2238 a         1236 c         1507 g         2207 t
ORIGIN      
        1 atacacgctt acttgcaaag atagaattta taaatcaaaa agccagcaat ttttaaaatt
       61 gctggctttt tccaaactgg cgaattactt ctccacccga ataaacttat aactataagg
      121 cgaaccaaaa gcatgtttct gaacaccggt aatatccgta cgttgcaaca ctgctgtttg
      181 atgttgataa agtggtaaga tcgccgcgtc atcatcaagc agaactttct cagaagctac
      241 gaacgcattc caacgttctt caggcttcgt cgcaagtgtt gtatcagttg attttacaag
      301 tctatcataa gcaggactgt tataactcat atggttatta aagtaatcgg ataagaacaa
      361 actgctatat gtccacggat ctttaaaatc aggcatccaa gcagccagtg acaagtcata
      421 attaccatca gaagttagct gtgtcgcgct cttcgaaggc atatttttca ctttaatcgt
      481 cacaccaggc aaattatctt caaactgcgc tttcaaataa gcgaaaatgg ttttcgttgt
      541 ttcttggtca tcgccgagaa gttcgattgt tactttgtca gtgccaagtt ctttttgtgc
      601 ttgtttccaa tattttaaag cttcttcttt gttataaact aaatggtcgc cgctatctgt
      661 gcggaaatca gcgcccgttg ttgggttttg gacgaaatct tttggaagca gtccattcgc
      721 cgggaatgag ccgtccccga gaatccgatc cgttagttgt ttcttatcga cagctaaatt
      781 aagcgcgtga cgcaaggaat tattcgcaag tggagtcgct ttaccgtcgc gtttttgatt
      841 catgcgcaaa taactaatca gcgcatcttt ttccgtttgg aaatctttct tgtctttgta
      901 ttgtttcgca aaatcgcctg aaagtggcac gcggtcagct tcgtttgtat tataaaggtt
      961 cacgccggcg ttaatatctt tcgcgacttg cacatcaatt tcatttactt tgacattatc
     1021 tttgtcccaa tattggtcgt ttttcgcgta agtccattta ttcgtaatgt tgccgcccca
     1081 atccttcata acaaaaggac cattgtataa agtgtgcgca ctatctgtcc cgtatttgtc
     1141 gccttgtttt ttcacaaagc tttctttttg tgggaaaaat gtttcaaaag aaagaagtga
     1201 gatgaagtaa ggaactggtt ttttaagtgt gatttcaagc gttgttgggt cagttgcaac
     1261 gacaccaagg tcagttacag gtagtttgcc ttcattgatt tcagtggcgt ttttaatcga
     1321 atctttgaag agcgcggagt acccaggtgc agtttttgga tcaacggcac ggcgccacgc
     1381 gtagacgaaa tcatcagcgg ttacttgaga accatcggac catttcgcat ttttctttaa
     1441 tttaatggtg tatttcgttt ggtcagcgct gatttctggc attccaccag caaccccagg
     1501 aacaaagtta tctttttgat caagtgtgta taatccctcg aagacttggt tttgcgcggt
     1561 gaagctagca aagtcttcct cagctgtcgt atttaaagtc agtaattcac tggtttcaag
     1621 aaatttaatt ttgtccgggg aagtttttgt cgtagatttt tcattgtcat ttccgcaagc
     1681 tgtaagtaaa agtactgtca aaatggcaaa aataggcaat gttttcttta aaaaatgcat
     1741 ggttttctcc ccttctatct gtgtatttat cgttattata agtattccga taagataagt
     1801 caagttaatg atttggcaaa aaaactgctt gacgcaaaaa taatcccgtg ataagatatt
     1861 ttgtgcaaat aagaatgatt acgttttgcg atacgcaatc ataatttaca tagtgtaact
     1921 ttaagtttta aatcgtaatc attacgaaaa aggagaggta atatgaaaaa atggtcattt
     1981 ttagttgtaa cagtgttggc gttcgtttta gttttggccg gatgcggtgc tagcaacaat
     2041 aaagtaagtg gagataagga caagctcaag gtagtgacaa ctttttatcc aatgtacgat
     2101 tttacgaaaa atgttgcggg agataatgct tccattgaaa tgttgattga tgcggggaca
     2161 gaaccgcatg attacgagcc aagcgcaaag gatattgcca aaatcgaagc ggctgatgtt
     2221 ttcgtttata acagtgaaga catggaaact tgggtgccga gcgtacttaa aagcttagat
     2281 tcgaaaaaat taaccgtgat tgacgcgagt aaaggaatcg agctagtaga aggaaccgaa
     2341 gaagaagacc atgatcatga gcacgaagaa ggacaccacc atgaacatga tcctcacgta
     2401 tggctaagcc cagtccttgc cgaacaagaa gtgactaata tccagaacgg tcttacaaaa
     2461 gcagataaaa caaatgcaga tacatacaaa aagaacgcag aaacatataa agagaaatta
     2521 aaaacactcg acaacaaatt taaaacagct tttgaaggag caaaacaacg cgatttcgta
     2581 acccaacatg cagccttcca atatttagca aaagagtatg acttgcatca agtggcaatc
     2641 gccggccttt cacctgacca agaaccaagc ccagcacgat tagcggaatt acaaaaatac
     2701 gtgaaagaaa ataatatcag caccatttat tttgaagaag tagcttcacc aaaagttgca
     2761 gaaacacttg caaacgaaac gggagcaaaa ctagaagtac taagccctat cgaaggaatt
     2821 acggataaag aacagaaaaa aggcatggat tatattgctt atatggaaca aaacttacaa
     2881 gccttgcaaa aaacaataaa ataaggaagc gatcaaatga aatacatcga tatagccaat
     2941 attggtttta aatacgaatc cgaaccagtg cttgaaaaca tttcttttca agtgagtgcg
     3001 ggagaattta ttatactaac aggagaaaac ggagcagcta aatcaacact gctccgtatt
     3061 attttgggca ttttacaacc cgataaaggt tccgttactt tcgccaaaaa gaacgcagat
     3121 ggcgggcgac ttttgacagg ttatgtacca caacaaatag catcatttaa tgcgggtttt
     3181 ccaagtacag ttctcgaact agtacggtca ggtcgttttc caaatggtaa atggttcaaa
     3241 cggctgacta caaaagatca tgcgcatgtt gaaaaagcat tgaaatctgt agaaatgtgg
     3301 gattatcggc ataaacgtat cggtgagcta tcaggtggtc aaaaacaacg gatttgcctg
     3361 gcccgaatgt ttgcaaccga cccagatata ttaattttgg atgaaccgca aacggcaatg
     3421 gataaacaaa gtaaaatccg tttttatgat ttattaaggc atgaagcaca agtacatggt
     3481 aaagcgattt taatggtaac gcacgatagt gaagaaatgg aagattttgt cgataagcat
     3541 attcgcctta ttagaaagga ggatgtgtca tggaaatgtt tctctatgga tttatgcaaa
     3601 gagccttcca agcatcaatg ataattgcta taattgctcc tcttttagga gttttcttga
     3661 ttattcgaag acagtcactt atggcggata cgctttcgca tgtgtcgctt gcaggtgtgg
     3721 cctttgggtt ggttttaaat gtgaatccca gtgtgacaac gcttattgta gtagttattg
     3781 cggcgctcgg gattgagtat ttgcgcgggg tttatgcaac ttattcagag ttgtccattg
     3841 cgatactaat ggctggtgga cttgctgtgg cgttagtgtt gatgagtttg gatcagggtg
     3901 gaattacaac aagcgtgcag caatacttat ttggttcgat tgtaacaatc agtaaggcgc
     3961 aagtgcagct gttggtaatt ttaggaatag ctatcgtagt attgttctta gtgtttaaaa
     4021 ggtttatgtt tgtacttact tttagtgaag atgttgcagt tgcagaagga gtccctgtgc
     4081 gtttgatttc gcttttattc agtgtggtta ctgggattgc gattgctgtt attatgccaa
     4141 tagccggagc gttactcgtt tcagcactta ttatattacc agctgcaatc ggtatgcgaa
     4201 tttcaaaagg gttcctgatg tgtgttatta gtgcaattct gattggctta gtcggaatgt
     4261 tttccggcct tgtgtcttcc taccaactag gaaccccacc tggcgcaaca attaccttaa
     4321 tgtttatcat tcttttcatt atttcgaccg ttgttttaaa aatggcacgg aaatgatttt
     4381 tagaacgatg tttgaccatt ttgtatcatt gcataaagct cttggtcatg aataatccaa
     4441 cttttttctt tcttttcaat ctgattggtt gttttgagat gctgcaaatc tttgtaaaaa
     4501 cagcttttcg aaagattact ataagaaagt agatgacttg ttttaattgc ttgaggaaga
     4561 attactgtgt catcatcact cagaaccccg tgtaacaaag ccatattcga aaaggtcgtt
     4621 ttaagttttt cagaagccgg actacttgcc attaagcttt taaagtaaat gtgagtagtc
     4681 tggtttttca ttatgaaaaa ttggaatccg aaattttcgg gaaacattga aagaaaatac
     4741 tccatatctg ctttcgaata cttatataat gaacatccag agagagtctt aaaattgaaa
     4801 tgattattac ttcggtcgag taatgtaaaa tagttcaaaa atgttccttt accttgaata
     4861 gaatagattt tgggattttg gctaccatca tttaaaatca aagcaatata tccatcaact
     4921 acaagataaa tatggttatc tatatcgatt ttttctgtta ataggctggc gttttttggt
     4981 acatcaattt gttcaaaagc tatttttcct tcatgggata aacgaataaa ttcttgataa
     5041 ttatataaat tttttggcat gacgttttct ccaatcttct tttgtaaaca taattgtatc
     5101 agaatgcaaa agaacagtta tacgcagtct aatagtattt cacgtgtaaa tgtttctaaa
     5161 atgtgaaata tttaaatcat taaaagtctt tttttagtga aaagtgctgt atagtcgctc
     5221 ttgtgcgcga gtttagaatg tcttatcata aaagtccaaa attagtattt tttattgaat
     5281 tgttacgaac gtaggttctg tgttataatt caactggatt gtaaaggagg actattgatg
     5341 aggagagtgc gtatttcagt taggcgttta gtagagtttg tgcggagaag cggtagtatt
     5401 gataaccgga tgacaaattc agaccgcgcc ttagaaggaa caaaaattca tcaattactc
     5461 caaaaagaag ctggggaaga atatgccgca gaagtacggc taaacctaga acgaatagtg
     5521 gacggaattg ctttttcgct tgatggacgc gcagatggca tcataaatag tcggatgatt
     5581 gatgaaatta aaacaacaga gacgccaatg gatgaaatta ccgaagattt tcgacctctt
     5641 cactgggcgc aacttatttg ttatggattt atgcttgcag aaaagtccga tttggcagaa
     5701 gttactctgc aattaacgta ttatcaagta gttgacaaag aagtaaaaca atttcaacgt
     5761 gtaatgagtc gcgaggaact gagtgttttt gtggacgatt tactttccca atatgctatt
     5821 tgggcaaagg catctgccgc ttgggaaatg aaacgaaata aaacaattca agaattaacg
     5881 tttccatacg acaactatcg aagtgggcaa agagagctcg ccattgcggt gtaccgaaca
     5941 atatcttcag aagaaagttt gttttgtgaa gcacccacag gtatcggcaa aacaatgtcg
     6001 accttgtttc ccggtattaa agctatgggt gaagggaaaa cggataaatt attttacttt
     6061 actgcaaaaa caatcacgcg acaagttgcc gaagatgcac tagatgagat gcgtcgtaaa
     6121 ggactggctg caaggagtgt tacaataact gcgaaggata agatatgttt tttagacgag
     6181 cggaaatgtg aaccagatca ttgccaattt gcgcgtggtt attatgatcg tttgaacgaa
     6241 gcgttgtttg atatgttgca atccgaagaa gcgattaccc gtcaagttgt tgagggttat
     6301 gcccgaaaat acacactttg tccatttgaa ttatcgctgg atgtggctct tttttgtgat
     6361 gtaatagttt gtgagtataa ttatttattc gacccagtag tttacttaaa acgctttttt
     6421 gcagaaggac cgggaaaata tacttttctt gtagatgaag tgcataattt agtagaccgt
     6481 gcgcgctcga tgtattcggc gacattaaaa aaatcaacag ttatgcaagt caaacgggga
     6541 ctagattcaa aaaagaacaa acgattgcta aatgcaataa atgtgatgaa taaagaaatg
     6601 attgtgctta acaaaaaact aaaggactta gaaaaaacga cttatgtcca aaaaagtgaa
     6661 ctcgttgatt ggaatgcagc tgtgttaaaa ttcacctttg tagcgaagga atggttgccg
     6721 caaaatactc agtcagaatt acaagtggat gtgttggacc tttattttga aagtttaaga
     6781 tatactgcca ttgcggagtt ttatgatgag cgttacgtca cacaagttac gagaaatcac
     6841 agggatttag aaataaaaca actatgtttg gatccggcgt tcttattatc agagaggcta
     6901 aaactcggaa gcagttcggt gcttttttca gcaacgcttc gaccaataga ttactataca
     6961 aatgtacttg gtggtcaaga agacactagt agaatgatct tttcttcgcc atttaaacaa
     7021 aaaaacatgc atttactagt agcggattat attagtacga aataccaaat gcgtgaaaat
     7081 agtatggaag ctgtcgtaga tgctctctat gctctcgtct ctgggaaaaa cggcaactat
     7141 atatttttct ttccatcatt tctatattta caaaaggtat atgattta
//
LOCUS       DABQVC010000142         7183 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.142,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000142 DABQVC010000000
VERSION     DABQVC010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7183
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.142"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            1..283
                     /locus_tag="IBJ56_002136"
                     /pseudo
     CDS             1..283
                     /locus_tag="IBJ56_002136"
                     /inference="COORDINATES: protein motif:HMM:NF019798.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
     gene            317..1652
                     /locus_tag="IBJ56_002137"
                     /pseudo
     CDS             317..1652
                     /locus_tag="IBJ56_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726041.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
     gene            1775..3133
                     /locus_tag="IBJ56_002138"
     CDS             1775..3133
                     /locus_tag="IBJ56_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HAM3418385.1"
                     /translation="MKKMLPESKVEAIRKEGFLNRAVEAYRFFYPTVSNVSNFKALND
                     LGITENHDFIIQLTTPDLNVLTQNSDTPYCLGTGNTENGPVVIELPQGAIVGVADDIN
                     FKFITNMGLTGDEQGKGAKYLYLPPNYDGDIPEGYIVRKPSSYRFLICLRAMVHQASD
                     YEKAFELLKKVKFYPLEEKDNNPTSTFHDFSHRKAISTPYYVEGKFDYWEVIKWALDN
                     DETDPEYYQMYGLLKAIGLAPNKEFNPDPDKKALLIEAAEKADKMMFVNSFNTDDPAA
                     IVWPGKNWEWAVYGENNDFYEKTYLNLPVRERWFYQATLETHMMFMHKVGFGSVYMLG
                     VKDKEGNYLDGGKSYTLKVPTPVPTSIFWSVTVYEMDTRSEIVTEQFMPALNSIKDTF
                     EVDADGNTTLYFGPNPPEDESLPWIQTVPDANWFTYFRIYGPTEPAFDSSWQLDDFEE
                     VK"
     gene            complement(3176..3769)
                     /locus_tag="IBJ56_002139"
     CDS             complement(3176..3769)
                     /locus_tag="IBJ56_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418386.1"
                     /translation="MAKTELNPKVDAFLSKPSTWQAEFKALREIAITFELEEEFKWGK
                     PCYAINGSNVFLIHGFKNYCALLFMKGALLRDPENILVQQTENVQAARQIRFTNLQEI
                     LDQKEFLKAYIQNAIEVEKAGLEVELKPREETPIPEELLAKFEEMRALQTAFEALTPG
                     RQKAYLLYFAAPKQSKTRVSRIEKYEATILDGLGLND"
     gene            complement(3906..4313)
                     /locus_tag="IBJ56_002140"
     CDS             complement(3906..4313)
                     /locus_tag="IBJ56_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HAM3418387.1"
                     /translation="MTLNVYLNFRTQSRDAIAFYEEIFGTKCTDLMTYGEIESREEPI
                     EDSLKDLVMNASLVMDGVKVMFSDVPKSMPLTFGDNITLVIDTSDEIKLTKQFHQLAE
                     GGNIVMPLGKTFWSEKYGQVTDKFGVGWQLNLS"
     gene            4478..5077
                     /locus_tag="IBJ56_002141"
     CDS             4478..5077
                     /locus_tag="IBJ56_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HAM3418388.1"
                     /translation="MKKTLYLIRHGQTLFNQRKKIQGFCDAPLTELGIKQAKIAGSYF
                     KENNITFDQAYSSTSERASDTLELITDKSYQRLKGLKEWNFGTFEGESEDLNPPLPYG
                     DFFAAYGGEREVDFRDRLVATMERIMSQDNHDTVLAVSHGAACAQFARYWEKTSKIGK
                     VTGLKNCCILKFEYENGRFTLVNFINHDFENGTHMESAK"
     gene            complement(5109..5369)
                     /locus_tag="IBJ56_002142"
     CDS             complement(5109..5369)
                     /locus_tag="IBJ56_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418389.1"
                     /translation="MNLDDLKNKVTESLPLENLGTLTEEATNKASELGEQASNVTENL
                     QNEATNLTENLQDKTSGLTENLQDTANELTGGFLDKIKNLFQ"
     gene            5493..6905
                     /locus_tag="IBJ56_002143"
     CDS             5493..6905
                     /locus_tag="IBJ56_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HAM3418390.1"
                     /translation="MNNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQ
                     TGSGKTAAFAIPIAEQIEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIY
                     GQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFID
                     QVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTD
                     NKEKTLKDVLITENPDSAIIFCNTKNQVDELTDLLDVKVSKIHGGLRQEDRFRAMDDF
                     KSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFV
                     KTNENPLLRDIEEMLDVTIEKKRKPTVIEVKANEEAFRKKQQKRPTIKKARGEKLNKN
                     IMKLYFNGGKKKKIRAVDFVGTISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLE
                     MMRSRKVKGRRLKVNEARKR"
     gene            6930..>7183
                     /locus_tag="IBJ56_002144"
     CDS             6930..>7183
                     /locus_tag="IBJ56_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3116 domain-containing protein"
                     /protein_id="HAM3418391.1"
                     /translation="MERPDNQLILMVLEVVKNPLYNIKSLTINFLQGDIVGNSTRNEL
                     LYCTYWLEFHGFILRDEKGDNQKYYSMTKQGDFLLQKIKN"
BASE COUNT         2535 a         1214 c         1387 g         2047 t
ORIGIN      
        1 aaaaataact tggtcgtctg aaagaattaa aaatttaaca gaggttagtt ttaagttttc
       61 tgagctaatt aatgtgactg gtatagatgg aactttttca ggaaaagtaa cacaaccatt
      121 taaaaaatca actacaccag taattaatgc agattccgaa attcattatc cgcaagggac
      181 aaaaaaaaca gaagcagagt ttttaaagga tattcaagcg caaacaacgg atgatttatc
      241 cattaaaagc gattttgaaa taatggtgaa tctcaagaaa gtaggaaaat acacagtaat
      301 attaaacgta gagaatatgg atggaattaa agctaatcca aaagaagtga ctgtttatat
      361 tgatgctgta caaggtgcaa atataactgt gaaatatgaa gacaaatcag ggaataaact
      421 tgcagaaaat agcatattaa ctggaaatgt cggtgaagaa tatagttcaa gtgaaaaaga
      481 aattttaggt tatacactaa ctgaaattcc aacaaaatca caaggagaat ttagtttaga
      541 agaacagact gtgacatata tctattcgaa aaatcccgtt ccagctaaag acatcacggt
      601 acaatatacc gatgaagatg gaatagaact agcaccaacc gaaacattat caggtaatgt
      661 tgatgaaaat tatgttacaa cagcgaagac ttttacagga tacgaattaa ttgaaactcc
      721 gagcaatgca gaaggaaagt ttagcgaaaa tgcacaaaca gtgacctatg tgtatcgcgc
      781 gattaaagca gatccaattt tagcaaaaga agttacggtg aactaccagg acgaattagg
      841 agctaaaatt agtgaaacgg aagtattaac tggtgaaatt ggtgaaacat acacaacagt
      901 ggctaaaaca atagatggct ataccttaat taagagccct attaacgcta gcgggatttt
      961 taacgaaaat cctcaaacgg ttacctatgt gtatcaatta caaaacaacc caataacagc
     1021 aaatatcact gttaaacact tggatgaaaa caacaatgct agcaccgagt gaggtactaa
     1081 gtggaattgt cgatgaagca tatacaacta atccaaaaga aataaaagac tattcgctag
     1141 taaaagtacc aactaatgct agcggaaaat tcacgacaga agcacaaacg gtgatttatc
     1201 actataaaaa aaacagtata cagacatcat cttatattac tgtaaaatat gtagatgaaa
     1261 cagggaaaga gctggccata agcgaggtat taaacggaaa cattaatgat tcctacgcaa
     1321 ctacagctaa ggaaattaaa ggctacacgc tagtggaaaa gcccgctaat gcaactggta
     1381 aatttacaga tcaggatcaa actataaaat atgtatatcg tgctaataca gatgaagtaa
     1441 atctagaccc agatgtacca gcgagaaatc ccaatggaga tattcaacca atgaatggtg
     1501 cccaaccacc aattgaggtt ccaaaatccc tgcctaaaac aggtagccag ccggcaaatt
     1561 tgatctttgg attaggagtt ttactagtgt ttcttagtac ccaatggcta catcgagata
     1621 aaagaaaaaa agataaattt cataactgct gataacattt cttgacaaaa ctctccttat
     1681 cctaaggaga gttttttact ttacgcttga acattcaaaa acaagggtat tagttaagtg
     1741 ttctaaaaaa agctaattga aggaggattt ttacatgaaa aaaatgctac ctgagagtaa
     1801 agtagaggca attagaaaag aaggattttt aaatcgagct gttgaggcat atcgattttt
     1861 ctatccaact gtgtccaatg tgtctaattt taaagcattg aatgacttag ggattacaga
     1921 aaatcacgat ttcattattc aactcacaac gcctgattta aatgtattga cgcaaaactc
     1981 agatacacca tattgccttg gaacgggaaa caccgagaat ggtccagttg ttatcgagtt
     2041 gccacaaggc gctatcgttg gtgtggctga cgatattaat tttaaattta ttacgaatat
     2101 gggattaaca ggggacgagc aagggaaagg tgcgaaatat ttatacttac cacctaatta
     2161 tgatggagat atcccagaag gctacatagt acgcaaacct tcaagctatc gtttcctcat
     2221 ttgtttacga gcgatggttc accaagcaag tgattatgaa aaagcatttg aactcctgaa
     2281 aaaagtgaaa ttctatccat tagaagaaaa agataataat ccaaccagta cattccatga
     2341 tttttcgcat cgaaaagcga tttcgacacc atattatgtc gaaggaaaat ttgactattg
     2401 ggaagtaatt aaatgggcgc tggataatga tgaaacagat ccagaatatt accaaatgta
     2461 tggcttacta aaagcaattg gtttagctcc aaataaagaa tttaatcctg atccagataa
     2521 aaaagcttta ttaatagaag ctgccgagaa agcagacaaa atgatgtttg tgaattcctt
     2581 taatacagat gatccagctg ctattgtttg gccaggaaag aactgggaat gggctgtcta
     2641 tggtgagaat aatgacttct atgaaaaaac gtatttaaat cttccggtaa gagagcgttg
     2701 gttctatcaa gcgacactcg aaacacatat gatgtttatg cataaagtcg gatttggttc
     2761 cgtttatatg cttggagtga aagataaaga aggaaactat ctggatgggg gcaaaagtta
     2821 tacattaaaa gtgccaacac cagtgccaac gagtattttc tggtcggtaa cggtttatga
     2881 gatggatact cgttcggaaa ttgtcacaga gcaatttatg cctgcgctta actccatcaa
     2941 agatacgttt gaagtagatg ctgacggtaa tacaacactt tactttgggc caaatcctcc
     3001 agaagatgag tcgcttccat ggattcaaac tgttccagat gccaattggt tcacgtattt
     3061 ccgtatttac ggaccaaccg aaccagcctt tgatagcagt tggcaattag atgattttga
     3121 agaagtaaaa taaataaaaa agcgcaacct tcacgcaggg tgcgcttttt ttcgattaat
     3181 cgtttaatcc taatccatct aaaatcgttg cttcgtattt ttcaatgcgc gaaacacgcg
     3241 tttttgattg ctttggagcc gcaaaataga gcaagtaagc tttttgacga ccaggagtta
     3301 aggcttcaaa agctgtttgt agcgcacgca tttcttcaaa tttagcgagt aattcttctg
     3361 gaataggcgt ttcttccctt ggtttaagtt ccacttctaa cccagctttt tctacttcaa
     3421 ttgcattttg aatatacgcc tttagaaatt ctttttgatc aagaatttcc tgtaaatttg
     3481 tgaagcggat ttgtctggca gcttgcacat tttctgtttg ctgaactaaa atgttttccg
     3541 gatcacggag tagtgcgcct ttcataaaga gtagtgcaca gtagttttta aaaccatgaa
     3601 ttaagaaaac gttgctgcca ttaatagcgt aacaaggttt cccccatttg aattcttctt
     3661 ctagttcaaa cgtgattgct atttctctta atgctttgaa ttcagcttgc caagtggatg
     3721 gtttacttag aaacgcatct actttaggat ttaattcggt ttttgccata aagaattcct
     3781 cttttccaca ctttttcttt gatacgtgtt attttaactt aatatgaaag gccttgcaaa
     3841 tttggtcggc ctactaaaaa tggacttaaa gaaagaacct gagttttatc ccagattctc
     3901 ttaatttaag ataaattaag ctgccaaccg acgccgaatt tatccgtcac ttgcccatat
     3961 ttttccgacc agaatgtttt gccaagtggc atgacaatat tgccaccttc tgcaagctga
     4021 tggaattgtt tggttaattt tatttcgtca gatgtatcaa ttactagtgt tatattgtct
     4081 ccgaatgtga gcggcataga ctttggaaca tctgaaaaca taacctttac tccgtccatt
     4141 actaaactag cattcatcac taaatctttg agcgaatctt ctataggttc ttctctggac
     4201 tcgatttccc catatgtcat caaatctgta cactttgttc caaaaatttc ttcataaaac
     4261 gcgatagcat ctctggattg tgttctaaaa ttcaagtaaa cattcaacgt catttgaatt
     4321 cctcctcgat ttttattcgc taaagttcta ttcattttgg tgtttttatt atagcagata
     4381 ctgcgtgaaa gaggaaaaat taagaagata aatacttgac ttggagctac tccagggtga
     4441 taaactaagg agaagatata gattcggagg aatttagatg aaaaagacat tgtatttaat
     4501 acgccatggt caaacattat ttaatcaacg taaaaaaatt caaggttttt gcgatgcacc
     4561 acttaccgaa ctcgggatta aacaagcaaa aatcgctggt agttacttta aagaaaacaa
     4621 tataacattc gatcaagctt acagttccac atcagagcgc gcatctgaca cgttagagct
     4681 gattacggac aaaagctatc aacggttgaa aggtttgaaa gaatggaatt ttggtacttt
     4741 tgaaggcgag agcgaagacc taaatccacc gctaccatat ggagattttt ttgctgcgta
     4801 tgggggagag cgagaagtgg atttcagaga tcgtttagta gcaacaatgg aacgtatcat
     4861 gagccaagat aatcatgata ctgtccttgc cgtttctcac ggagctgcct gtgcccaatt
     4921 tgctagatat tgggaaaaaa caagcaaaat tggcaaagta acaggactga agaattgctg
     4981 tattttaaag tttgaatatg aaaatggcag atttacttta gttaatttta ttaatcatga
     5041 ttttgagaat ggaacgcata tggaaagcgc taaataaaaa agcactcgtt aatgagtgct
     5101 ttttcgcttc attgaaacaa attctttatt ttatccaaaa atccaccagt taactcattc
     5161 gcagtatctt gcaagttttc cgtaagtcca cttgttttat cttgtagatt ttctgttagg
     5221 ttcgtcgctt cattctgtaa attttctgtg acattacttg cttgttcacc aagctcagat
     5281 gctttgtttg ttgcctcttc tgtcagtgtt cctaggtttt ccaggggcag ggactcggta
     5341 actttattct tcaaatcatc taaattcatc ttttcctcct tattttgggg gcttagagtt
     5401 cattctaaag gaaggaggga taaagtacaa acaattcgtt ccatcatttg tgaaaaaata
     5461 tggtatgatg atatgaggaa atgaggactg acatgaataa tttaaaatta agtgaagaaa
     5521 ttaaaagagc gattaatgaa ctaggatata cagaagcaac acccgttcaa aaagcggtaa
     5581 ttccagttgc cttaacagga gaagatattg ttgctaaatc acaaactggt agtgggaaaa
     5641 cagcagcatt cgctattccc attgcagaac agattgaatg ggaagaaaat aagccacaag
     5701 cactaatcat cgttccaaca cgagaacttg caatgcaagt caagacagaa tgtacgaata
     5761 ttggacgatt taaacgtgtc aaagctgcag caatatacgg acaatcacca tttgcgaaac
     5821 aaaaattaga actaagccaa aaaaatcata tcgtcgttgg tacgccaggt cgcctactgg
     5881 accatattga aaaaggatca ctgaatgtcg acaaggttgc ccatttagtt ttagatgaag
     5941 tagatgaaat gttaagcatg ggatttattg atcaagtcga agatattctt agccgtttac
     6001 caaaacagcg ccaaaatcta tttttctcag caactatgcc agaagaaatg caagatttga
     6061 ttaaacgcta ccaagatgat ccaatggtaa tcgaaatggc atcggaaaaa acaaacccta
     6121 tcttccacgt ggagatgcaa acagataata aagaaaaaac gctaaaagat gttttgatta
     6181 cagaaaatcc ggatagcgca ataatatttt gcaatacgaa aaatcaagtc gatgaactca
     6241 ccgatttact tgatgtaaaa gttagtaaaa ttcatggggg tttaagacaa gaagaccgtt
     6301 tccgagcaat ggatgatttt aaaagtggca aatcccgttt cttaattgcg acagatgtgg
     6361 cagggcgcgg aatagatgtg gataatgtat cgttagtcat taactacgat ttaccaattg
     6421 aaaaagaaaa ttatgtacat cgtatcggtc gtactggtcg cgctggcaaa agtggtaaag
     6481 ctattagttt cgtgaaaaca aatgaaaatc cacttttgcg tgacatagaa gaaatgctcg
     6541 atgttacaat cgaaaaaaaa cgtaaaccga cagtgataga agtgaaagct aacgaagaag
     6601 ctttccgcaa aaaacaacaa aagcgcccaa caatcaaaaa agctcgtggg gaaaaattaa
     6661 ataaaaacat tatgaaactg tattttaatg gtggaaaaaa gaaaaaaatt cgtgcagtag
     6721 attttgttgg aactatttct aaattagaag gaattacggc cgaagatatc ggaattatta
     6781 cgattgaaga ccatgtttct tttgttgaaa ttttaaatgg aaaaggtccg gcagtactgg
     6841 aaatgatgcg ctctcgtaaa gtaaaaggta gacgcctgaa agtaaacgag gccagaaaac
     6901 gataaattaa agaaaagaag gtccaaacaa tggaaaggcc agataatcaa cttattttaa
     6961 tggtgttaga agttgttaaa aatccacttt acaatataaa atcactaaca attaattttc
     7021 tgcaaggtga catcgttggg aattcaacaa gaaatgagtt gttatactgc acttactggc
     7081 ttgaatttca tggctttatt cttcgtgacg aaaaagggga taaccaaaaa tactatagca
     7141 tgaccaaaca aggagatttt ctacttcaaa aaattaagaa tga
//
LOCUS       DABQVC010000143         7161 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.143,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000143 DABQVC010000000
VERSION     DABQVC010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7161
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.143"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1027
                     /locus_tag="IBJ56_002145"
     CDS             <1..1027
                     /locus_tag="IBJ56_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HAM3418392.1"
                     /translation="LLERAEKILLIPDYIGYVLTGVKVAETTNSSTTQMLNLREQLFD
                     KDLLSHLNIDVEKFAPLTDAGTYLGKVKEEWLEEYDIPNCDVVTVATHDTASAVVGTP
                     AEGENWAFLSSGTWSLIGMELSAPINNEAAFKENYTNEWGAYGTYRFLKNIMGLWIVQ
                     EIARMDDYKHSFAEMAEEASNYPYFKQIINVNDARFNNPENMVDEIKLYCQETGQTIP
                     ETIGELTNCVYGSLALYYALELEKMTEITGKKIEKLYIVGGGSNVAMLNQLTAKLAGI
                     EVFAGPSEATAIGNLVVQMINQGEIESMRAGRKIIRNSFEIGEFSCGDVRFEEIKERF
                     TKVLEFN"
     gene            1040..2302
                     /gene="rhaA"
                     /locus_tag="IBJ56_002146"
     CDS             1040..2302
                     /gene="rhaA"
                     /locus_tag="IBJ56_002146"
                     /EC_number="5.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose isomerase"
                     /protein_id="HAM3418393.1"
                     /translation="MGQETEISKRYQVAKERYQAIGVDTEKALKTLKDIKISMHCWQG
                     DDVKGFLNPDGELTGGIMATGNYPGAAHTPKQLRQDLEKAYSLIPGKHKLNLHAIYVD
                     TDEKVDLNEIEPKHFTPWVEWAKEQGLGLDFNPTFFSHPMFKDNYTLASPDKEVRDFW
                     IEHGKRSRKISEYFGKELGQTSINNFWVPDGIKDCPIDRYTPRKRLMEALDEVFAEKL
                     DEKYTQEAVESKLFGLGAEAYTVGSHEFYMGYGITRDKLICLDAGHFHPTEVISNKLS
                     SLALFSKGVMLHVSRPVRWDSDHVVIMDDELIEIGRELVRNDLLGITNIGLDFFDATI
                     NRIAAWVVGTRNTQKSLLKALLEPTADLKKMELENDFTSRMAITEELKDFPFGDVWNY
                     FCEINGVPVGLDWLKEVKAYEEDVLLKR"
     gene            2315..3136
                     /gene="rhaD"
                     /locus_tag="IBJ56_002147"
     CDS             2315..3136
                     /gene="rhaD"
                     /locus_tag="IBJ56_002147"
                     /EC_number="4.1.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulose-1-phosphate aldolase"
                     /protein_id="HAM3418394.1"
                     /translation="MTKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVV
                     EYLDVKQIIRTIPMDFDGKKLAGKYFLVTGSGKYFKNVEEAPAVNLGVIQVSEDGKAV
                     HLLWGYTDGGLPTSELPAHFMSHIARLSVDPENRVVMHCHATHLLAMTFTHELTEREF
                     TRTLWQMCTECLVVFPEGVGIIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGK
                     SMDETFGLIETAEKAAEVYTIVMSQGGIKQAITDEQLKALGERFGVEAKAGYLNN"
     gene            3149..3463
                     /gene="rhaM"
                     /locus_tag="IBJ56_002148"
     CDS             3149..3463
                     /gene="rhaM"
                     /locus_tag="IBJ56_002148"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HAM3418395.1"
                     /translation="MERVASIMYLYPGNQEEYKKRHDALWPEMKEALKAHGAANYSIF
                     LDEKTDTLFAYVEVEDKAIYDKIAETEICQKWWKYMAPIMKSNPNNSPVALDLKEVFY
                     LA"
     gene            complement(3504..4916)
                     /locus_tag="IBJ56_002149"
     CDS             complement(3504..4916)
                     /locus_tag="IBJ56_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3418396.1"
                     /translation="MEQTNKRNTLALISIMLGAFISLLDTTIVNVALPDITTALHATS
                     ETIEWVISGYALAFGLVLILAGRLGDKFGRKNIYIIGITLFLIMSVTAGFADSENSLI
                     ISRVIQGLAAGLFFPQINATIMDMYSGKSLGKIFGILGSVIGVGTAIGPLTGGLLIEL
                     FGTTNGWRAVFFVNVPFVLVTLVLAMLYLPKRTVSTKKISFDLPGVGLLTIALLLLLF
                     PLISNGANDFKPIDYLLMALSIPLFIILYKWSVYQEKKGNQPLIAPNLLKNNQFVSGM
                     LLSLVYFAAFTSIFFVLSLTWQTGFNRSAILSGLAISPFALGSVLAASNSYRLIPILG
                     RKLLMLGVALVIIGLGTVSIVFHLNDGAFSAWLLFLPLFIAGIGSGLTIAPLNSFTLS
                     TVTGVDRGGASGMFNTAQRIGSSFGIAVVGSVFFRTLGNTAATSKASAFSDSLQMSMY
                     VNIVLLVFCFLLVFRLPKNI"
     gene            5072..5614
                     /locus_tag="IBJ56_002150"
     CDS             5072..5614
                     /locus_tag="IBJ56_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418397.1"
                     /translation="MENRKQMIKTERLFLSEMTLADTEILFGYWSDDSVTRYMNIEPF
                     QSLQPVEEMIRMLRQLEIEGKALRCVIILQVTGEIIGTCGFNYIDHENHRAEIAYDLG
                     TRFWKRGYATEAVRALMEWGKESFELHRIEAKVDPRNSASIALLEKLGFSKEGLLRDY
                     EKIGETYQDVQLFSWIDEIQ"
     gene            5747..>7161
                     /locus_tag="IBJ56_002151"
     CDS             5747..>7161
                     /locus_tag="IBJ56_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HAM3418398.1"
                     /translation="MTKEYYFIKPELSSPETKQENIDSWLKTQDKTFYDAQIAQERDY
                     CFWCNIVETAKPNSRTSYTSMAYTLNEPNMLNSAGKTSFILSEEEVLYIHTLSVVRDG
                     KVIDKLDDINVKVLDYVRDENQASFNDEKKVTVLIRDLHLNDIFIVETTIERKYEESS
                     IRNDFFRWIYSAPNSYWAYGKYRFELKNETEKKLEANFHYFRDEAGAILEKDKVMVEH
                     NESYTIEKEDYIGEDAKELEITPFVDFVTEQSYPQITKTISDIYQKFYQVNLAEFAAD
                     IVAELDELPTLDHKIKHAIDFVQKEVYYLYNETEMDGHEPQAAEVTYKTKQGDCKAKT
                     VLLKVILDYLDVNSELILVNYGSDVFLPVYTPSPFNFNHAILKITHNNQVYFIDATMS
                     SDQGFLANRQKNSFMYYLEIKPGAELQKQEPFQDEIPSVEEVVYCDVKDNAAEITFER
                     KLRGGMANGSREMFKNDSNKD"
BASE COUNT         2472 a         1100 c         1569 g         2020 t
ORIGIN      
        1 tttactagaa cgagcggaga aaattttgtt gattcctgac tatattggtt atgttctcac
       61 gggggttaag gtggcagaaa caacaaattc atcgactaca caaatgctta acttgcgaga
      121 acaattattt gataaggatt tactttcgca tttgaacatt gatgtggaaa aatttgcgcc
      181 actgacggat gcaggtacgt atttaggtaa agtaaaagag gagtggctag aggagtatga
      241 tattcctaat tgtgatgtag tgacagtggc aacacatgat acagcttcgg cagtggtggg
      301 aactccggca gaaggagaaa attgggcatt cttgagtagt gggacttggt cgctaatagg
      361 gatggagcta agtgcgccaa ttaataacga agcagctttt aaagaaaatt acacgaatga
      421 atggggcgca tatggaactt atcgcttttt aaaaaatatt atggggcttt ggattgttca
      481 agaaattgcg cgcatggacg actacaagca tagttttgct gagatggctg aggaagcgag
      541 taattatcct tatttcaagc aaattattaa tgtcaatgat gccaggttta ataacccgga
      601 aaacatggtg gatgagatta aattgtattg ccaagaaact ggacaaacta taccggagac
      661 gattggagaa ctgacaaatt gtgtgtatgg aagtctggca ctctattatg cactagaatt
      721 ggagaaaatg actgaaatta ctggtaagaa aatcgaaaaa ctttatattg ttggtggagg
      781 aagtaatgta gctatgctaa atcaattaac agctaaactt gcagggatag aagtatttgc
      841 gggaccttct gaagcaacgg cgattggaaa tttagttgta caaatgatta atcaaggtga
      901 aatcgaatct atgcgtgcgg gaagaaaaat tattcgaaat tcatttgaaa ttggcgaatt
      961 ttcttgtggt gatgtgagat ttgaggaaat aaaagaaaga tttactaagg tacttgaatt
     1021 taattaggag gcttttagaa tgggacaaga aacagaaatt agtaaacgat accaagtggc
     1081 gaaagaacgt tatcaagcaa ttggagttga tacggaaaaa gcgcttaaaa cactgaaaga
     1141 cattaaaatt tcgatgcact gctggcaagg cgatgatgtt aaaggtttct taaatccaga
     1201 tggcgaactt acaggcggaa tcatggcgac cgggaattat ccgggtgcgg ctcatactcc
     1261 taagcaatta cgccaagatt tggaaaaagc ttattcactt attcctggaa aacataaact
     1321 taacttacat gcaatttacg tagatacaga tgaaaaagta gatttaaatg aaattgaacc
     1381 taagcatttc actccatggg tagagtgggc gaaagagcag ggtttgggtc tggatttcaa
     1441 cccaactttc ttttcacatc caatgtttaa agataattat actttagctt caccagataa
     1501 agaagtacgc gatttttgga tagagcacgg gaaacgctcg cgcaaaattt ctgagtactt
     1561 tgggaaagaa cttggtcaaa caagtattaa taatttctgg gtgccggatg gtataaaaga
     1621 ttgcccgatt gatcgctaca ccccgagaaa acgtttgatg gaagctttag atgaagtttt
     1681 tgcagaaaaa ttagatgaaa aatataccca agaagctgta gaaagtaagt tgtttggttt
     1741 aggcgcagag gcttatactg tcggttcgca tgaattttat atgggttacg gaattacgcg
     1801 ggataaattg atttgcttgg atgcgggaca tttccatcca actgaagtca tttctaataa
     1861 attatcttct ttggcacttt tcagtaaagg cgtaatgtta catgtgagtc gtccagtccg
     1921 ctgggatagt gaccatgtgg tgattatgga tgatgaatta attgaaattg gtcgcgaatt
     1981 ggtgcgcaat gatttacttg ggattacaaa tatcggtctt gatttcttcg acgcaacaat
     2041 caatcggatt gctgcatggg ttgttggaac tagaaatacg caaaaatcat tacttaaagc
     2101 ccttttagaa cctacagctg atttgaaaaa aatggaactg gaaaatgact ttacatctcg
     2161 tatggcaatt acagaagaac taaaagactt cccatttggc gatgtatgga actacttctg
     2221 tgaaattaat ggtgtcccag ttggtcttga ctggttgaaa gaagtaaaag cttatgaaga
     2281 agatgtatta ctaaaaagat aggagatagt gacgatgaca aaggatataa tggatgctgt
     2341 ttttattaag gaaatggcga aaactacttc aaatttatac cggttaggct gggatgaaag
     2401 aaacggtggc aatatcactt atttgttgga tgaaaaagaa gttgtggaat atttagatgt
     2461 aaagcaaatc attcgcacaa ttccaatgga ctttgacggt aaaaagcttg ctggcaagta
     2521 tttcttagta actggttcgg gtaaatattt taaaaatgtt gaagaagctc cagctgtgaa
     2581 tttaggtgta attcaagtga gtgaagacgg gaaagcagtt catttgttgt ggggctatac
     2641 agacggcgga ctaccaacga gtgaacttcc agcgcatttt atgagtcaca ttgcaagact
     2701 ttctgtggat ccggaaaacc gcgttgttat gcattgtcac gctactcatt tgctcgcgat
     2761 gacatttaca catgagctaa cggaacgaga atttacaaga actttatggc aaatgtgtac
     2821 ggaatgttta gtcgtttttc cagaaggtgt tgggattatt ccttggctgg ttcctggtac
     2881 gaatgaaatt ggagaagcta catctgaaaa aatgaaggaa aatcgtttaa tcgtttggcc
     2941 acatcacggg atttatggtg cgggaaaatc aatggatgaa acatttggat taattgaaac
     3001 cgcggagaaa gcagcagaag tttatactat tgtgatgtca caaggcggta ttaaacaagc
     3061 gattacagat gaacaattga aagcactggg tgaaagattt ggcgttgaag caaaggcagg
     3121 ttatttaaat aattaggagg taacaataat ggaacgagtg gcatctatta tgtatttata
     3181 tcctggtaat caagaagaat ataaaaaaag acacgacgca ctttggccag aaatgaaaga
     3241 ggctttaaaa gcacatggag cagctaacta ttcgatattt ctagatgaaa agacggatac
     3301 attgtttgct tatgtggaag tcgaggataa agccatttat gacaaaatag cagaaacaga
     3361 aatttgtcaa aagtggtgga aatatatggc tccaattatg aaatcaaatc ctaataacag
     3421 cccggttgca ttagatttaa aagaagtttt ctatttagca taagaaaaga gacatgactt
     3481 taacgcaaag tcatgtctct tttttaaata tttttcggta accggaatac aagtaggaaa
     3541 caaaaaacga gcagaacaat attgacgtac atactcattt gcaaactgtc ggaaaaggcg
     3601 cttgcttttg aagtagcggc agtatttcca agtgtgcgga agaagactga gccaacaaca
     3661 gcaatcccaa aggacgatcc aattcgctgc gctgtattaa acataccact agctccgccg
     3721 cgatccacac cagttactgt ggaaagggtg aaactattca atggtgcaat agtcaaacca
     3781 ctgccgatac cagcgatgaa aagaggtaag aataagagcc aagcagaaaa agcgccgtcg
     3841 ttcaaatgga aaacaataga cacggtgcca agcccgatga taacaagcgc aactccaagc
     3901 attaagagct ttctacctaa tatagggatt agtcggtaac tattagaggc agctaacaca
     3961 ctacctaacg caaaaggact aattgcaagc ccggataaaa tagccgaacg attgaaacca
     4021 gtttgccaag ttagcgatag gacgaagaaa atactagtaa aagcggcaaa gtatacaagc
     4081 gataaaagca tacctgaaac aaattgatta tttttaagta ggttgggagc aattaatggc
     4141 tgatttcctt tcttttcttg gtagacgctc catttgtaaa gaatgataaa gagtggaata
     4201 gatagcgcca ttaaaagata gtctatcggt ttgaagtcat ttgcgccgtt tgagataagt
     4261 ggaaaaagta atagtaaaag tgcaatggtt agtagcccaa ctccaggcaa atcgaagcta
     4321 atttttttcg tggagacagt tcttttggga agataaagca ttgctaggac tagcgttact
     4381 aacacaaaag gtacgttaac gaaaaaaact gcacgccaac catttgtagt tccgaaaagt
     4441 tcaattaaaa gacctcctgt aagaggtccg atggcagttc ccacaccaat aacagatcca
     4501 agaattccga agattttccc aaggcttttt ccagaataca tatccataat tgtggcattg
     4561 atttgcggga aaaataatcc ggcagcaagt ccctgtatta cccgggaaat aattagacta
     4621 ttttcggaat ctgcaaaacc agctgtcaca ctcataatta gaaatagcgt aatcccgata
     4681 atgtagatat tttttcggcc aaatttatcc ccgagtcgac cagctaaaat aagtacaagt
     4741 ccaaaagcaa gcgcatagcc tgaaattacc cattcgatgg tttcactcgt ggcatgtaga
     4801 gcagttgtga tatcaggtaa ggcaacgttg acaattgttg tatctaataa tgaaataaaa
     4861 gctccaagca taattgaaat aagtgctaaa gtattacgtt tattcgtctg ttccatgaat
     4921 cattctcctt ttttgaagct ttttgagata ttttccatta taaacctaaa aactctgatg
     4981 ataaagaagg agcgaatgtt tcacgtgaaa cattttactt tgcgagtaag atttgataag
     5041 cttcttttat taaaagggcg ggggttaacg tatggaaaat cggaagcaaa tgataaaaac
     5101 ggaacgactt tttttaagcg aaatgacgtt agctgatact gaaatattgt ttggttactg
     5161 gtcagatgat tctgttacta gatacatgaa tattgaacct ttccaaagtt tgcaaccggt
     5221 tgaagaaatg attcggatgc tacgacaact agaaattgaa ggaaaggcac ttcgttgtgt
     5281 gattattttg caagtaacag gagaaatcat tggtacatgc ggatttaatt atattgatca
     5341 tgaaaaccat cgggcagaaa ttgcctatga tctaggtaca cgcttttgga aacggggtta
     5401 tgcgacggaa gcagtgagag cgttgatgga atggggaaaa gaatcatttg aattgcaccg
     5461 aatcgaagca aaagtagacc caagaaatag tgcttctatt gcattgttag aaaagcttgg
     5521 tttttcgaag gaaggtttac tgcgggatta tgaaaaaatt ggtgagacat accaagatgt
     5581 gcaattgttt tcgtggatag atgaaattca gtagtaaatg tgtcgatttt tttactaaat
     5641 agtgtagata aaccaaaagt tattatatca taaagatttt gccttgtttg ttctatttat
     5701 ttattgctag aataaggtta tctaaaacac ttaaggagat tacacaatga caaaagaata
     5761 ttattttata aaaccagagt taagttctcc tgaaacaaaa caagaaaaca ttgattcttg
     5821 gttaaagaca caagataaaa ctttttacga tgcacaaatt gcgcaagaac gtgattactg
     5881 cttctggtgt aatattgtag aaacggctaa accaaattca cgcacgagtt atacttcgat
     5941 ggcatataca ttaaatgaac ccaacatgct caattcagcc ggcaagacga gttttatttt
     6001 atcagaagaa gaggtattat acattcacac tttatctgtt gttcgtgatg gtaaagtgat
     6061 tgataaattg gatgacatta atgtaaaagt acttgactat gttcgtgatg aaaatcaagc
     6121 gagttttaat gatgagaaaa aagtgacagt acttattcgt gacttacatt taaatgatat
     6181 ctttattgtg gagacgacaa ttgagcgtaa atatgaagaa agcagcattc gcaatgactt
     6241 tttccgctgg atttattccg cgccaaattc ctactgggct tatggaaaat accgttttga
     6301 attaaaaaat gaaacggaga aaaaattaga agcgaatttc cattatttcc gagatgaagc
     6361 aggcgccatc ttagaaaaag acaaagttat ggttgaacat aacgaatctt atacaatcga
     6421 aaaagaagat tatattggag aagacgcaaa agaacttgaa attacaccgt ttgttgattt
     6481 tgttacggag cagtcgtatc cgcaaattac aaaaacaatc agtgacattt atcaaaaatt
     6541 ctatcaagta aaccttgctg aatttgcggc tgatatagtg gctgaactag atgagttacc
     6601 gacattagac cataaaatta agcatgccat cgattttgtt caaaaagaag tatactattt
     6661 atataatgaa acagagatgg atggtcatga acctcaagct gctgaagtga cttataaaac
     6721 gaaacaaggc gattgtaagg cgaaaacagt tcttttgaaa gtgattttag attatttaga
     6781 cgtgaattca gagcttattt tggttaacta tggtagtgat gtattcctac cagtttatac
     6841 accgtcacca ttcaacttta accatgcgat tttaaaaata acgcataata atcaagtcta
     6901 ttttattgat gctacaatga gtagtgatca aggatttttg gctaatcgtc aaaaaaatag
     6961 ttttatgtat tatttggaaa ttaaaccagg ggcggaattg caaaaacaag agccatttca
     7021 agatgaaatt ccatctgtgg aagaagtggt ttactgcgat gttaaagata atgcggctga
     7081 aattactttt gaaagaaaat tacgcggtgg aatggcaaac gggtcacgag aaatgtttaa
     7141 aaatgattcc aataaagaca t
//
LOCUS       DABQVC010000144         7144 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.144,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000144 DABQVC010000000
VERSION     DABQVC010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7144
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.144"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            24..1064
                     /locus_tag="IBJ56_002152"
     CDS             24..1064
                     /locus_tag="IBJ56_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HAM3418399.1"
                     /translation="MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEQ
                     FIARVIPKNKFLAVIVGSFIGVFFPSCECGIVPIVRNLLAKGVPLHAGIAFMLTAPII
                     NPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGLKERFLKYEAASE
                     KVAVPATNLALAGGPSESTTTNFQVLTSDGALTEDAHKGHAHHHHGEEHAHTKMTLSQ
                     KIWHTVQHAVDEFFSVGKYLVFGALIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAF
                     VLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMMLGAFKAKFVLLIVTS
                     VTIVVFLYALVI"
     gene            1083..1922
                     /locus_tag="IBJ56_002153"
     CDS             1083..1922
                     /locus_tag="IBJ56_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03943 family protein"
                     /protein_id="HAM3418400.1"
                     /translation="MFRVFILFGFGFYLMQLHISGDISKYINMKYAYLSFSAMIAAFL
                     LAIIQLIMVFRDEDIGAKTEHMGHTHDGENTILKKIMVYGLLSYALIAGFLFPVATLD
                     STIVSAKGFHFPKNNAAGDDPYAQNQFLRPDTSGYFGETDYEKMMAKEKAEIIDQNPI
                     KVNDSNYLMTMEILYNYPGEFTGKQIEFTGFVYNDEVTQDNNLFLFRFGIIHCVADSG
                     VFGMLVQMPEKTDLKNDTWLTVKGTITQEYYSPFKMNIPSVQVESYKEVAKPKSVYVY
                     RKY"
     gene            2011..2931
                     /locus_tag="IBJ56_002154"
     CDS             2011..2931
                     /locus_tag="IBJ56_002154"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HAM3418401.1"
                     /translation="MNDYNHYFHFPREEWRKLEVSKDQILTAEELEEIRGLNDRISLQ
                     DISEIYLPLIKLIAIQYHEAIFIHGEKMEYLKKKESRAPFIIALAGSVAVGKSTTARV
                     FKLMLDRWFSKTRQVELVTTDGFLYPNKVLEERGIMDKKGFPESYDRDRFAKFLTDLK
                     ANKEDVEIPLYSHFTYDVLDETRVIHNPDIVIIEGINVLQADQHESLFPSDFFDFSVY
                     MDANEADIKKWYLERFFMLRETAFQDESSYFHPYTKISKQEAETFALGVWDTINGVNL
                     KENIEKTKYRADLVLQKGTDHLISDIYLRK"
     gene            3047..3769
                     /locus_tag="IBJ56_002155"
     CDS             3047..3769
                     /locus_tag="IBJ56_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418402.1"
                     /translation="MSEIAIKVSNLDVKIGKKQILTNMTLEIEKGEIFGLIGPSGAGK
                     TTLVKTIIGMEKATNGTTEVLGKAMPNLPVISKIGYMAQSDALYTDLTAKENLDFFAS
                     LYSIKGAAKKDRMNYAATLVNLQQDLTKKVNNYSGGMKRRLSLAISVLADPDVLILDE
                     PTVGIDPELRKTIWAELGDLKANGKCILVTTHVMDEAEKCDRLAMIRNGQIIAVGTPQ
                     ELSSKTSSGKLEDAFLEFGGKH"
     gene            3769..4884
                     /locus_tag="IBJ56_002156"
     CDS             3769..4884
                     /locus_tag="IBJ56_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418403.1"
                     /translation="MRIFAIVKRIINQFRRDKRTLALMFLAPLLLITLLTYLFEGDTV
                     KPVVGVSGLSDSMVKELKANDLTIKTYSENTDVTAKIKDANLDAFFKQNGEKLEVTYE
                     NSEPSLSKEIGLKLQKAMMTEQQAQVKKQAKATGESLAKAGIDPNTIPSLTQSPEKLS
                     ISTNYVYGDKGTTFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKR
                     IELELGYLIGFGIFALLQSILVAVFSIQVLGMMQNGSLFYVLLITLTLGMVSLALGIL
                     LSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWIAHIMPLYYGANALTSIM
                     VKGEGFASFATDFYILLGFVLVFVILNIFALKKYRKV"
     gene            4907..5563
                     /locus_tag="IBJ56_002157"
     CDS             4907..5563
                     /locus_tag="IBJ56_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3418404.1"
                     /translation="MDAEGDIIRQMLDLTEKETKMSEKQRRIVAASIELFAEKGYAGT
                     STNEIAKKAGVAEGTIFRHYKTKKDLLMAITMPTLIGGVIPFLAQSFVKEVFESEYPD
                     FQSFIREIIVNRFDFAKENGKVIKIYFMELFYHDELRIQFSEIFMTHVKGQFDQMIDY
                     YKERGEIVDMPNSTIMRALITNIVGFMLTRFVVMPDVEWDDAKEIDDTVAYIMRGLGK
                     "
     gene            complement(5595..>7144)
                     /locus_tag="IBJ56_002158"
     CDS             complement(5595..>7144)
                     /locus_tag="IBJ56_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HAM3418405.1"
                     /translation="IILIALLAFRFVKPNKTARIRARKVVGVLTLGIAMFFGNLGLAE
                     IDRPQLLTRTFDRNYIVKYLGMTNYQIYDAVKSTESSTQRALADSSDVTEVLNYTKSK
                     YAAPNPEYFGKAKGKNVIYIHLESFQQFLVNYKLNGEEVTPFINSFFKDQNTLSFTNF
                     FHQTGQGKTADSEMLLENSLYGLPQGSAFTTKGQNTYESASAILGQQGYTSAVFHGNY
                     KSFWNRDEIYKQFGYDNFFDASYYDMNEADVSNYGLKDKPFFKESEEYLSSLQQPFYT
                     KFITLTNHFPYPIDEKDASIAPATTGDSSVDTYFQTARYLDESVKSFVDYLKKSGLYD
                     NSVIIMYGDHYGISDNHEEAMTKILGKDYNTFENAQAQRVPLMIHVPGVQGGVQEQYG
                     GQVDLLPTLLHLLGVDNKEYLQFGTDLLSKDHKQLVPFRNGDYITPTYSMIGGNMYNQ
                     QTGEPIATETKEMKETKEKVAKELELSDSVLQGDLLRFYAPDGFKKVDPSKYNYNKKK
                     STDSSDK"
BASE COUNT         2230 a         1292 c         1413 g         2209 t
ORIGIN      
        1 agagtaaaga aagaaggaat cccatgttta gtcatcttcc ggattcattc ctccaaatga
       61 ataccatttt tatttctatt ttgattgagg cactgccgtt tgtattaatt ggagtattta
      121 ttgctggctt tattcaaatg tttatatcag aacaatttat tgcccgtgtt attcccaaaa
      181 ataaatttct agcagtcatt gttggctcgt ttattggtgt gtttttccct tcctgtgaat
      241 gtggcattgt tcctatcgtt cgtaatttac tggcaaaagg ggtaccgctt catgctggta
      301 ttgccttcat gcttaccgct cctattatca acccagtagt attattttca acgtatgttg
      361 catttggtag tacgtgggaa gttccgttgc tacgtgttgc gggaagtctt gtagtagctc
      421 tcgttgtcgg aaatattatc gcttattttt ataaaggaac tggactcaaa gagcgctttt
      481 taaaatatga agcagctagt gaaaaagtgg ccgttccagc aacaaatcta gcgcttgctg
      541 gtggtccttc tgaaagtacg acaactaatt tccaagtcct aacaagcgac ggagcactta
      601 cagaagacgc tcataaagga cacgcgcacc accatcacgg tgaggagcac gcgcatacaa
      661 aaatgacatt gagtcaaaaa atatggcata ccgtacaaca cgcagtcgat gaattcttct
      721 ctgtaggtaa ataccttgtg tttggggctt taattgccgc agcgatgcaa acatacatta
      781 aaacatccac acttgtttcc ataggtcatg gtccgatttt atccatctta cttatgatgg
      841 ttcttgcctt tgtattgtcc ctttgctctg aagctgatgc ctttattggc gcttctttcc
      901 gtagtgtttt ctccacacaa tccatcgttg catttttagt gttcggccca atgcttgata
      961 ttaaaaatct aatgatgatg ttaggagcat ttaaagcaaa atttgtctta ttaattgtta
     1021 ctagtgtaac gattgttgtc tttttatacg ccttagttat ttaaccgaaa gaaggtgaaa
     1081 gtatgtttcg cgtttttatt ttatttggat ttggttttta tttgatgcag ttacatattt
     1141 ctggtgatat cagtaaatat ataaatatga agtacgctta tttatctttt tctgcgatga
     1201 tagccgcatt tctacttgcg attattcagc tcattatggt gtttcgcgat gaagatattg
     1261 gcgcaaaaac agagcatatg ggacacaccc atgatggcga aaatactatt ttgaaaaaaa
     1321 ttatggtgta tggtttactt tcttacgcct tgattgcagg ttttcttttc cccgtcgcaa
     1381 cgcttgattc gaccattgtt tcggcaaaag gatttcattt cccgaaaaac aatgcagctg
     1441 gcgacgaccc atacgctcaa aatcaatttt taagaccaga tacgagtggc tattttgggg
     1501 aaaccgatta tgaaaaaatg atggcgaaag aaaaagcgga aatcatcgat caaaatccaa
     1561 tcaaagtcaa tgatagtaat tacttaatga cgatggaaat tctttataat tatccagggg
     1621 agtttactgg gaaacaaatc gaatttaccg gttttgttta taatgatgaa gtcactcaag
     1681 ataataactt gtttttgttc cgttttggaa taattcactg tgttgccgat tctggtgtgt
     1741 ttggaatgct tgttcaaatg cccgaaaaaa ccgatttgaa aaacgataca tggcttacag
     1801 taaaaggaac catcacccaa gaatattatt ctccgttcaa aatgaacatc ccgtctgtac
     1861 aagtagaaag ctataaagaa gtagcaaaac caaaatcagt ttatgtttat cgtaaatatt
     1921 aaatcgctac ttgcggattt atgcagcttg cgttatcctt aaataaagct gtttacgttt
     1981 tcacgaatga ataaaaggat ggaacattga atgaatgatt acaaccacta ctttcatttc
     2041 ccacgagaag aatggcgcaa gctggaagtg agtaaggacc aaattttaac tgcagaggaa
     2101 ctggaagaaa tacgtggttt aaatgaccga atttctttac aagacatctc tgaaatctat
     2161 ttaccactaa taaaactaat tgcgattcaa taccatgaag cgatttttat tcatggcgaa
     2221 aaaatggaat acttaaagaa aaaagaatcg cgtgcaccat ttattattgc attagcagga
     2281 agtgtggctg ttgggaaaag tacgacagcg cgtgttttca aattaatgct tgatcgctgg
     2341 ttctccaaaa ccagacaagt agagcttgtg acgacagacg gctttcttta tcctaacaaa
     2401 gttttagaag agcgcggtat catggacaaa aaaggcttcc ctgaaagcta cgaccgcgac
     2461 cgttttgcca agtttttaac cgacttaaaa gcaaataaag aagatgtcga aattccactt
     2521 tattcgcatt tcacttatga tgttttagac gaaacccgtg tgatccataa tccagatatc
     2581 gtcatcattg aaggaatcaa tgttcttcaa gcagatcaac atgagagcct gtttccaagt
     2641 gacttctttg atttctccgt ttacatggat gccaatgaag cggatattaa gaaatggtat
     2701 ttagaacgtt tcttcatgct tcgcgaaaca gctttccaag atgaaagttc ttatttccac
     2761 ccatatacta aaattagcaa acaagaagca gaaacatttg cactcggggt ttgggataca
     2821 atcaacggcg tcaacttaaa agaaaacatt gagaaaacaa aatatcgagc cgacttagtg
     2881 cttcaaaaag gcacagatca tctcatttca gacatttatt tacgcaaata accgaatgca
     2941 gatagaagga aacttcttga tgcattcggt tttttcttta cattggagaa aatccgagta
     3001 caatagaaag tgagtaatca ctcatttgaa aaagggaggg aaagcaatgt cagaaatagc
     3061 gattaaagtt tctaatttag atgtgaaaat tggaaagaaa caaatcttaa ccaatatgac
     3121 tctcgaaata gaaaagggcg agatatttgg cttaataggg ccatccggtg caggaaaaac
     3181 aacactcgtg aaaaccatca tcggaatgga aaaggcaacg aatggcacaa ctgaggtttt
     3241 aggaaaagca atgccaaatt taccagtcat tagcaaaatt ggttacatgg cccaatcaga
     3301 cgcactttat acggatttaa cagccaaaga aaacttggat tttttcgctt cactatattc
     3361 catcaaaggt gcagccaaaa aagaccgaat gaattatgca gccactttag ttaatttaca
     3421 acaagattta actaaaaagg tgaacaatta ttcaggaggg atgaaacgca ggctgtctct
     3481 ggccatttct gtccttgctg acccagatgt cctaatttta gatgagccaa cagtcggtat
     3541 tgatccagaa ctaagaaaaa cgatttgggc agagctaggc gatctaaaag cgaacggtaa
     3601 atgtatcctt gtgacgacac acgtgatgga tgaagccgaa aaatgtgata gacttgccat
     3661 gatcagaaat ggacaaataa tcgctgtagg gaccccacaa gagctctcaa gtaaaacgtc
     3721 atctggtaag ctagaagatg cctttttaga gtttggaggg aagcactaat gcgaatattt
     3781 gccattgtca aacgcatcat taaccaattt cgccgtgata aacggacgct tgccctaatg
     3841 tttcttgcgc cacttttact tatcacactg ctcacttatt tattcgaagg tgacacagtg
     3901 aagccagttg ttggtgtaag cgggctttct gactccatgg taaaagaact gaaagcaaat
     3961 gatttaacca tcaaaactta ctcggaaaat accgatgtaa ccgctaaaat taaagatgcc
     4021 aacctcgacg ctttttttaa acaaaacggt gaaaaactcg aagtcaccta tgaaaatagt
     4081 gaaccaagct tgagtaagga aatcggatta aaactacaaa aagcaatgat gacggagcaa
     4141 caggcacaag tgaaaaagca agcgaaagca accggtgagt cacttgctaa agctggtatt
     4201 gatccaaaca ccattccttc acttacacaa agcccagaaa agctcagcat ctcaacaaac
     4261 tacgtatacg gagataaagg tactaccttt ttcgacacaa ttagcccgat tttcattggc
     4321 tttttcgtat tctttttcgt atttctgatt gccggtattt ctttcttgag agaacgaaca
     4381 acaggcacgc ttgaaagact tatggcaacc ccaattaaac gtatcgaact tgaattaggg
     4441 tatttaatag gttttggtat ttttgcgtta ctacagtcta tcttagtcgc agttttctcc
     4501 atccaagtac ttggcatgat gcaaaacggc tccttattct atgtgttact tattacatta
     4561 acactcggca tggtttctct agcgctagga attttacttt ctactttcgc aaataatgaa
     4621 tttcaaatcg ttcaatttat tcctatcgtt atcgtgccac aagtcttatt ttgtgggatt
     4681 ttcccgctcg atggcatggc agattggctc gtgtggattg cccatattat gccgctttac
     4741 tacggcgcaa atgcactaac atccattatg gtaaaaggag aaggattcgc ttcgtttgca
     4801 actgatttct atattttact aggatttgtg ctcgtatttg ttatattaaa tatttttgct
     4861 ttgaaaaaat accgcaaagt ttaaatgaaa caggaggaga taagacgtgg atgcagaagg
     4921 agacattatc cgtcaaatgc ttgatttaac ggaaaaagaa acaaagatga gtgaaaagca
     4981 gcgccgaatt gtcgctgctt ccatcgaact gtttgcagaa aaaggctatg ccggaacttc
     5041 aacgaatgaa attgctaaaa aagctggggt cgcagaaggc accattttta gacactataa
     5101 aacgaaaaaa gatttactaa tggcgattac catgccaacg cttatcggtg gtgtgatacc
     5161 atttttagca caaagctttg tcaaagaagt gtttgaaagt gagtatccag attttcagtc
     5221 attcattcgg gaaatcatcg ttaatcgctt tgattttgcc aaagagaatg gtaaggtcat
     5281 caaaatttac tttatggaac tgttttatca cgatgagtta agaatacagt tttcagaaat
     5341 ttttatgaca catgtcaaag ggcaatttga tcaaatgatt gattattata aagagcgcgg
     5401 ggaaattgtt gatatgccga acagcacgat tatgcgtgct cttatcacga atattgtcgg
     5461 atttatgcta acaagatttg tcgtgatgcc cgacgtggag tgggatgatg ccaaagaaat
     5521 tgatgatacg gtggcgtata ttatgagagg tttaggtaag taaaaaagag tccagatatt
     5581 ctggactctt tttctcattt atcggatgaa tcagttgatt ttttcttatt gtaattgtat
     5641 ttacttggat ccactttttt gaaaccatca ggagcataga aacgtaacaa gtcaccttgt
     5701 agtacagaat ctgaaagctc taattctttt gctacttttt cttttgtttc tttcatttct
     5761 tttgtttccg tagcaattgg ttccccagtt tgttgattat acatgttacc accaatcatt
     5821 gaataggttg gagttatata atcgccattt cggaatggaa caagttgttt atggtcttta
     5881 gaaagtaaat ctgtaccaaa ttgcaagtac tctttattat caacaccaag taagtgaagt
     5941 aatgtcggaa gtaagtcaac ttggccacca tattgttctt gaacgccacc ttgaacacca
     6001 ggaacgtgaa tcattaaagg aacacgttgc gcttgggcat tttcaaaagt gttgtaatct
     6061 ttaccaagaa tttttgtcat tgcttcttca tggttgtcgg aaataccata atggtcaccg
     6121 tacatgataa tgacagagtt atcgtaaaga ccagatttct tcaagtaatc aacaaagctc
     6181 ttcacagatt cgtctaaata acgagctgtt tggaaatacg tatctacaga tgaatcgcct
     6241 gttgttgccg gagcaatcga agcatctttc tcatcaattg gataagggaa gtggttcgta
     6301 agcgtaataa atttcgtgta gaacggttgt tgtaatgacg atagatattc ttcggattcc
     6361 ttaaagaatg gtttatcttt aagtccgtag ttagaaacat ctgcttcgtt catatcgtag
     6421 taactagcat caaagaaatt atcgtaacca aattgtttat aaatttcatc acgattccag
     6481 aagctcttat agttaccgtg gaatacagca cttgtatagc cttgttggcc taaaatagca
     6541 gatgcagatt cataagtgtt ttgcccttta gttgtaaagg cagaaccttg aggcaagccg
     6601 taaagcgagt tctcaagtaa catttcggag tcagctgttt taccttgacc tgtttggtgg
     6661 aagaagtttg taaagcttag tgtattttgg tctttaaaga aagagttaat aaacggcgtt
     6721 acttcttctc catttaattt gtaatttact aggaattgtt ggaaactctc taaatggata
     6781 taaatgacgt ttttgccttt tgctttacca aaatattccg gatttggcgc ggcatatttg
     6841 gatttggtat agtttaagac ttctgtaaca tcactactat cagcaagtgc acgctgtgtg
     6901 gatgattcgg tacttttcac tgcgtcatag atttgatagt tagtcatacc aagatattta
     6961 acaatataat ttctatcaaa cgttcttgtt agaagttgtg gacgatcaat ttctgcaagt
     7021 cccaagtttc caaagaacat tgcgatacca agcgtcagaa ccccaactac ttttcttgca
     7081 cgaatacggg ctgttttgtt tggttttaca aagcggaaag caagtagtgc aattaaaatg
     7141 ataa
//
LOCUS       DABQVC010000145         7118 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.145,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000145 DABQVC010000000
VERSION     DABQVC010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7118
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.145"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            54..992
                     /locus_tag="IBJ56_002159"
     CDS             54..992
                     /locus_tag="IBJ56_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418406.1"
                     /translation="MIYDNAWVGINKNKKLDRIQLLHLSQKDRDKIVAEIENISELAG
                     KKELKKYSTDSLLFEDGYYIDLEELPVNNLLEDFVNRFLMKTTLSVYDKIIPISDNTN
                     CDGKLDLDKDKFKFILLESDTDCLFLPIQSRGVVKGGSILNIPKFFTTGNKSVLYDIG
                     AGITVPTTVCAQYDKNNGCLYVFDNVDFEMMLGTFEQKKALAKENLLHFKERNFKVAA
                     EKFSVKFDGYDKIEEAILNQKRLTIRLSKYKESGTEFTIDRIREAVERLPIADQVTIC
                     SENRIIEVNEYNYKTFIAIIHDSIVERLISRDIALI"
     gene            1007..1291
                     /locus_tag="IBJ56_002160"
     CDS             1007..1291
                     /locus_tag="IBJ56_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418407.1"
                     /translation="MKKTVHGWEIISNLDIRLYQDEAGGVVILLDKDGFGDQVPVLLN
                     FDDDGVDIKALSHLTKSVRVLLDKKVRIEWHDEYFEERTQAMEYIEVERD"
     gene            1327..1881
                     /locus_tag="IBJ56_002161"
     CDS             1327..1881
                     /locus_tag="IBJ56_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418408.1"
                     /translation="MSKKLVSIIFLGICLLLVGCGKEVVDSKYTGKWKLESSGIGMSD
                     GSNYKETDAAGKVSLDLDIDAEGNVKELYIDDAVAITNSYKLKKKGDDEYQYDGTLIS
                     KKVYSYETESDKENVETMLKFLKSKNNVKITKNEQKGDEYHIDVKADEKDFVFSLEMQ
                     SGKLIFKKVDTKEKVLIKETYKKN"
     gene            2072..3160
                     /locus_tag="IBJ56_002162"
     CDS             2072..3160
                     /locus_tag="IBJ56_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAM3418409.1"
                     /translation="MINTLKTSYQKTPYKLGGNGPRNVGVLTEALQNIDDNLESDIYG
                     NGAVIENFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRCVAYHPLSHLEIH
                     EQDGLKELQQITPILLGTANRLLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEELE
                     EISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILA
                     GNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSC
                     SGVKTVPEVPVSNMFHVYFEKSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVS
                     VGDAFAEIPVEILDVVFKQLEVDLPCQN"
     gene            3148..3933
                     /locus_tag="IBJ56_002163"
     CDS             3148..3933
                     /locus_tag="IBJ56_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate deacetylase"
                     /protein_id="HAM3418410.1"
                     /translation="MPKLIIDADDFGLSKAINHGIIESYKTGITTSTLLMPNLETAEH
                     AIALAKDHPDLFIGQHTNFLLGKPCADPVEIPSLVDENGEFHRSKYYRANPELKFQYE
                     DVRTETIAQMERFKALTGHYPEHIDCHSIGDGTVDQAFFDIAREFGIHTTLKYSGDKK
                     LPDQEGYLPITKLLESGALPYTNGGVSVENFLNDDFGLLKLAANEIAEMHFDVGFLDQ
                     FVLDNSSYTLMRCRELATICDARVRDWLSENGFELITFGDLQR"
     regulatory      3964..4069
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4156..4830
                     /gene="tenA"
                     /locus_tag="IBJ56_002164"
     CDS             4156..4830
                     /gene="tenA"
                     /locus_tag="IBJ56_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HAM3418411.1"
                     /translation="MFVHGFQEEVGDLWQETLQHPFVQSLADGTLEKEAFYYYLLQDD
                     YYLSHFEKVIEKSVEQAGTAELAAEMREVQRRLQQSELLMREQFYPRVGLAERDFSER
                     KPAPTAYHYTSHLYRMADFGSFGVTIAALLPCYALYADMGKMYEGARSSEPFYQELLD
                     SYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWR
                     GSVNYV"
     gene            4823..5632
                     /gene="thiM"
                     /locus_tag="IBJ56_002165"
     CDS             4823..5632
                     /gene="thiM"
                     /locus_tag="IBJ56_002165"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HAM3418412.1"
                     /translation="MFDFMTLEKVREKGPLVHNITNIVVANDSANGLLAIGASPIMAS
                     AKEEMDELAKMADVLVINIGTLDGELVTAMKIAGRAANVAGTPVVLDPVGVGATSYRR
                     KVVQELLAEIQFTAIRGNAGELAAIAGEAWEAKGVDAGVGSADVLSIAEKVANEWSTV
                     VIISGEVDVISDGTRFAKVANGSELLPRITGSGCLLSAVCGSFIAVQDDAFRASVEAC
                     ASYAVASEYAEIELERKLPGSFRSLFLDALASWSVEKTRAKAKIQESGEHK"
     gene            5629..6432
                     /gene="thiD"
                     /locus_tag="IBJ56_002166"
     CDS             5629..6432
                     /gene="thiD"
                     /locus_tag="IBJ56_002166"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HAM3418413.1"
                     /translation="MIFPQVLTIAGSDSGGGAGIQADIKTFQERKTFGMSVITAITAQ
                     NTLGVKAVHKIPVEMIREQCDAIAEDFQVSAVKTGMLADAEIIREVARNIRLHNFQNI
                     VIDPVMIAKGGTALLENEATQVLKDELLPLGTIITPNIPEAEEILGEKITTKAEIEQA
                     AKKIFDIGVKAVVIKGGHSKMSEAADFYYDGETTKWLTSERFDTPHTHGTGCTFSACI
                     AAELAKGNSLLDSVMVAKEFITSAIKYPLGIGHGHGPTNHFAYRLEDGK"
     gene            6429..7055
                     /locus_tag="IBJ56_002167"
     CDS             6429..7055
                     /locus_tag="IBJ56_002167"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HAM3418414.1"
                     /translation="MRAELAVYFIAGTQDIVRGTLPGVLEEALKAGITCFQYREKGAG
                     SLQTASERKEMALECQQLCAKYQVPFIINDDVALALEIGADGIHVGQNDEEIRQVIAS
                     CAGKMKIGLSVHSVSEAEEAERLGAVDYIGVGPIFPTISKADAEPVSGTTILKEIRRA
                     GIKLPIVGIGGINETNSAEVLTAGADGVSVISAITRSDDCQLVIANLI"
BASE COUNT         2205 a         1113 c         1824 g         1976 t
ORIGIN      
        1 gttaggtgat tcggctgatt gcaatacata tttaattgct gaggagaatg aaaatgatat
       61 atgacaatgc atgggttggg ataaataaga ataagaagtt agatagaatt cagttattac
      121 atttaagtca aaaagataga gataaaatag ttgcagaaat agaaaatatt tctgagcttg
      181 caggaaagaa ggaactaaaa aaatattcta ctgattcatt attgttcgag gatggatact
      241 atattgattt ggaagagctt cctgtcaata atttattaga agattttgta aatcgatttt
      301 taatgaaaac tacgttatct gtatatgaca aaattatacc aattagtgat aatacaaatt
      361 gtgatgggaa attagattta gataaagata aatttaaatt tattctttta gaatctgata
      421 cagattgttt gtttttaccc attcaatcaa gaggggttgt aaagggggga tcaattttaa
      481 atatccctaa attcttcact acaggaaata aaagtgtcct atatgatata ggtgctggaa
      541 ttacagttcc aaccacggtt tgcgctcaat atgataaaaa taacggctgc ttgtatgttt
      601 ttgataatgt tgattttgaa atgatgttag gaacttttga acagaaaaaa gcacttgcga
      661 aagaaaacct tttgcatttt aaagaacgaa actttaaagt tgctgctgaa aaattttctg
      721 tgaaatttga tggatatgat aaaattgaag aagctatctt aaaccaaaaa cggctgacaa
      781 ttagactttc gaaatataaa gaatcaggga ctgagtttac gatagataga attcgtgaag
      841 ctgttgaaag attaccaata gcagatcaag taactatatg tagtgaaaat agaattatag
      901 aagtaaatga atataattac aaaacattta ttgctattat tcatgattct attgtggaaa
      961 gattaattag tagagatatc gcattgatat aaggaggata aacgaaatga aaaaaacagt
     1021 acacgggtgg gaaataatat ctaatttaga catacgatta taccaagatg aagctggtgg
     1081 ggttgtgatt ttactagata aagatggttt tggtgatcaa gtgccagtgc tattgaattt
     1141 tgatgatgat ggagtagata taaaagctct ttcgcattta acaaaaagtg ttcgagtttt
     1201 gctggataag aaggtgcgga ttgaatggca tgatgagtat tttgaagaga gaacgcaagc
     1261 aatggagtac atcgaggtgg aacgggatta accgttaatt atatacaaaa aaaggagagc
     1321 aacaagatga gcaaaaagtt agtaagtatt attttcttag ggatttgtct tttgttagtt
     1381 ggttgtggta aagaggttgt tgatagtaag tataccggaa aatggaagtt ggaatcgtcg
     1441 gggattggta tgagcgatgg atcaaattac aaggaaacgg atgcagcggg taaagttagt
     1501 cttgacttgg acattgatgc agagggaaat gtaaaagaat tgtatattga tgatgcagtt
     1561 gctataacta attcttataa attaaagaaa aaaggtgacg atgaatatca atatgatggt
     1621 acattgatta gcaaaaaagt atacagttat gaaactgaaa gtgataaaga gaatgtagaa
     1681 acaatgctaa aatttcttaa atccaagaat aatgtcaaaa taaccaaaaa tgaacaaaaa
     1741 ggggatgaat atcacataga tgtcaaagca gatgaaaaag atttcgtatt ctctttagaa
     1801 atgcaaagtg gaaaattaat tttcaaaaaa gtcgatacta aagagaaagt tttgattaag
     1861 gaaacctaca agaaaaatta aattattaga agcgagaagc ggaagtccgt tgtaaccacc
     1921 tattttttaa aatttatttg tgaagactat tctttcgagg gtcctcggga ggatagtttt
     1981 tttgttaccg tagttaaatt tacaataggc ttgagttcta ggtataatat agataaattt
     2041 agaaattata tcgtaaaagg agtgaaccaa aatgataaac acactaaaaa ccagctacca
     2101 aaaaacacca tataaactag gcgggaacgg tccgcgcaat gtaggtgttc tgacagaagc
     2161 acttcaaaat atagatgata acctagaaag cgatatttac ggaaatggcg cagttattga
     2221 aaactttgaa acaaaaatcg cgaaaattct cgggaaacaa tctgcggtat tttttccaag
     2281 tgggacgatg gctcagcaaa tcgcgttaag gatttgggct gaccggaaag agaatcggtg
     2341 cgtggcatat catccgctct ctcatttgga gattcacgag caagatgggt taaaagaatt
     2401 gcaacaaatc acgcccatat tacttggaac agcgaatcga cttttgacaa ttgacgatat
     2461 taaaagcctt cgcgagccag tttctagtgt gcttatcgaa cttccacaac gagaaattgg
     2521 tgggcagctg cctgcttttg aagagcttga ggagatttcg gagtattgcc atgaacaggg
     2581 tatttcgttg catcttgacg gggcacggtt atgggaaatc acgccgtttt atcagaagtc
     2641 tgcggaagaa atttgtgcgc tgtttgatag tgtgtatgtg tcgttttaca aaggaattgg
     2701 cgggattgct ggggcgattc tggctgggaa tgatgatttt gtgcaagagg cgaaaatctg
     2761 gaaacgacgg tatggcggag atttgattag tctgtatccg tatattttgt ccgcggatta
     2821 ctattttgaa aaacggattg ggaaaatggc ggaatatttt gaagcggcga aaggattggc
     2881 tgagcgattt aattcgtgtt cgggcgtgaa gactgtgccg gaagtgccgg tttctaatat
     2941 gtttcatgtt tattttgaga agtcggctga tgagattggg gcgattttga cgaagattca
     3001 ggatgaaact ggggttggga tttcggggta tttgcaggag aaatcggcgg atgtttgtgc
     3061 gtttgaggtt tcggttgggg atgcgtttgc ggaaataccg gtggagattt tggatgttgt
     3121 gtttaaacaa ttagaggtgg atttaccatg ccaaaactaa tcatcgacgc agacgatttc
     3181 ggtctatcca aagccatcaa ccacggcatc atcgaaagct acaaaaccgg catcaccaca
     3241 tctaccttac tcatgccaaa cctagaaact gccgaacacg caatcgctct cgcaaaagac
     3301 cacccagacc tattcatcgg gcaacataca aatttcctac tcggaaaacc atgcgcggac
     3361 ccggtggaaa tcccatcact cgtcgacgaa aacggggaat tccatcgttc caaatattac
     3421 cgtgctaacc cagaactgaa attccaatac gaagatgtgc gcacggaaac tatcgctcaa
     3481 atggaacggt tcaaagcgct aacgggtcac tacccagaac acattgactg ccactcaatc
     3541 ggtgatggaa cggttgacca agctttcttt gatattgcgc gtgagttcgg gattcacacc
     3601 actttaaaat acagcggtga taaaaaattg ccagatcagg aaggttattt accaattact
     3661 aaactattgg agtctggcgc actcccatac acaaatggtg gtgtctcagt tgaaaatttc
     3721 cttaacgatg atttcggatt attaaaattg gcagcaaacg aaatcgctga gatgcatttt
     3781 gatgtcggtt ttttggatca atttgtgctg gataattctt cttatacgtt gatgcggtgc
     3841 cgtgagcttg cgacgatttg tgacgcgcgg gtgcgggatt ggcttagtga aaatgggttt
     3901 gagcttatta catttgggga tttacagcgg taaaactcta tgttatgatg aacgcaactt
     3961 aataagaaaa actagggggg ccgattctgg ctgagatagg aaggtaatgc tttctgaccc
     4021 tttgaacctg tttgttagtg caagcgtagg gaagtgaatg tgaaagtgac cggaaaattt
     4081 atcgcggctg ctgtttcttt gcttatgcta agggacagtg ggcgcttttt ttattgttca
     4141 aaaggaggag tttgagtgtt tgttcacggt tttcaagaag aagtagggga tttatggcaa
     4201 gaaacgttgc agcatccatt tgtgcagagt ttggcggatg ggacgcttga gaaggaggcg
     4261 ttttactatt atttgctcca ggatgattat tacttgtcac attttgagaa ggtgattgag
     4321 aaaagtgtgg aacaggcggg gacggcggaa cttgctgcgg aaatgaggga agtacaaagg
     4381 cggcttcagc aatcagagtt gttgatgcgc gaacagtttt atccacgggt tgggctagcg
     4441 gagcgtgatt tttccgagcg caaaccagcg ccaactgctt atcattatac ttctcacctt
     4501 taccggatgg cagattttgg cagttttggg gtaacgattg cggcgctttt gccatgttat
     4561 gcgctttatg ctgatatggg gaaaatgtac gaaggggcgc ggagttcgga gccattttat
     4621 caagagttgt tggatagtta tgtggatgaa aattatcaaa aagtggtgtt gcagcagaag
     4681 cggttggtgg aacaggcggc gagtatggcg gatgcgcggg agcttgccct catgaagcag
     4741 gcttttcaaa ttagtgtgga aatggaatgg gcgttttttg atatggctta taaaaaacaa
     4801 aattggcgtg ggagtgtgaa ttatgtttga ttttatgacg ttggaaaagg tgcgggaaaa
     4861 agggccattg gtacataata ttacgaatat cgtggttgcg aatgactcgg cgaacggctt
     4921 gcttgcgatt ggtgcgtcac cgattatggc ttctgcgaaa gaggaaatgg atgaacttgc
     4981 gaaaatggcg gatgtgctcg tgattaatat tgggacgctg gacggggagc ttgttacagc
     5041 gatgaaaatt gctggacgtg cggcgaatgt tgctgggacg ccggttgtgc ttgatccggt
     5101 cggtgttggc gcgacttcat accgtcgtaa agtggtgcaa gaattattgg cagaaattca
     5161 gtttacggcg attcgtggaa atgcgggaga gcttgcggcg attgctggtg aagcttggga
     5221 agcgaaaggc gtggatgcgg gtgttggttc ggcggatgtg ctgagcattg ctgaaaaagt
     5281 ggcgaatgaa tggagcacgg ttgttattat tagcggcgaa gtagatgtga tttcggacgg
     5341 aactcgtttt gcaaaagtgg ctaatggtag cgaactgctt ccaagaatta ctggttctgg
     5401 ttgtttgctc agtgcagttt gcggtagttt tatcgcagtt caagatgatg cctttcgagc
     5461 tagtgtcgaa gcatgcgcga gttatgcggt ggcttctgaa tatgcggaaa tcgagttaga
     5521 aagaaaactt ccaggttcat ttcgatcact atttttggat gcgcttgcta gttggtcggt
     5581 cgaaaaaacg cgtgccaaag ctaaaatcca agaaagtggt gaacacaaat gattttccca
     5641 caagtgttaa cgatagctgg ttcagattct ggcggcggcg cggggataca agcggacatc
     5701 aagacatttc aagagcgcaa aacctttggc atgtccgtca tcacggcaat cacggcacaa
     5761 aacacgctag gtgtaaaagc agtgcataaa atcccagtag aaatgattcg tgaacagtgt
     5821 gacgcgattg cagaggattt tcaagtgagc gccgtgaaaa ctggaatgct agcagatgca
     5881 gaaattatcc gggaagtggc gcggaatata cgtttgcaca acttccaaaa tatcgttatt
     5941 gatcccgtga tgattgcaaa aggtggcact gctttgcttg aaaacgaggc gacacaagtg
     6001 ttgaaagatg agcttttgcc acttggtacg atcattacgc cgaatattcc agaagcggaa
     6061 gaaattcttg gtgaaaaaat cacaaccaag gcggaaattg aacaagccgc taagaaaatt
     6121 tttgatatag gtgtaaaagc ggttgttatt aaaggtgggc atagcaaaat gagtgaggcg
     6181 gctgattttt actatgatgg cgaaacgaca aaatggctga cgagcgagcg ctttgatacg
     6241 ccgcatacgc acggaactgg ttgcactttt tcggcatgta ttgcagctga acttgcgaaa
     6301 gggaattcgc ttttggatag tgtcatggtt gcgaaagaat ttatcacaag tgcgattaaa
     6361 tatccgcttg gaattggtca cggtcatggt ccaaccaacc attttgccta ccgattggag
     6421 gatgggaaat gagagctgaa ctagctgtat attttatcgc tggaacgcaa gatattgttc
     6481 gtggaacgtt gccaggtgtg ttagaagaag cactgaaagc cggaattact tgtttccaat
     6541 atcgcgaaaa aggagcaggc tcactccaaa ctgcttccga aagaaaagaa atggcgctag
     6601 aatgccaaca attatgcgca aaatatcaag tgccattcat tattaacgat gatgtcgccc
     6661 tagccctcga aatcggcgcg gacggcatcc atgtcgggca aaacgacgag gaaattcgcc
     6721 aagttatcgc gagttgcgct ggaaaaatga aaatcggact ttcggttcat tcggttagtg
     6781 aagcggagga agcagaacga cttggagcgg tggattatat cggcgttggg cccatttttc
     6841 ccacgatttc aaaagcggat gcagagccag tgagtggaac gacaattttg aaagaaattc
     6901 gccgggctgg aattaagcta ccaattgtcg ggattggcgg aattaatgaa acaaattcag
     6961 ccgaggttct cacagcaggt gcggacgggg tatcggttat ttcagcgata actcggtcgg
     7021 atgattgcca gttggttatc gctaatctaa tatgagaatt ttaaaagaca aaaactatag
     7081 atgaattctc aacaaatgtt aattagtaac ttttttct
//
LOCUS       DABQVC010000146         7094 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.146,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000146 DABQVC010000000
VERSION     DABQVC010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7094
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.146"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(23..490)
                     /locus_tag="IBJ56_002168"
     CDS             complement(23..490)
                     /locus_tag="IBJ56_002168"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HAM3418415.1"
                     /translation="MAEKMNVESFNLDHTKVKAPFVRLAGTKVGVHGDEIYKYDVRFK
                     QPNKEHMEMPALHSLEHLMAELARNHTDKLVDISPMGCQTGFYVSFINHSDYDDALEI
                     IATTLTDVLAATEVPACNEVQCGWAASHSLEGAKALAAEFLDKRDEWKNVFGE"
     gene            complement(573..3032)
                     /gene="parC"
                     /locus_tag="IBJ56_002169"
     CDS             complement(573..3032)
                     /gene="parC"
                     /locus_tag="IBJ56_002169"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HAM3418416.1"
                     /translation="MSNPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPV
                     QRRILFAMNVEGNTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNML
                     IEMHGNNGSVDGDPPAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLP
                     ARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFP
                     TGGIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRM
                     DELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMV
                     AINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEV
                     IKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQI
                     SVLEKILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIV
                     SVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPV
                     HELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAIT
                     NYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGART
                     AGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLML
                     RELKSNPHRFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEG
                     EPTSIWLAIPEIKDTSDAKDE"
     gene            complement(3029..4996)
                     /gene="parE"
                     /locus_tag="IBJ56_002170"
     CDS             complement(3029..4996)
                     /gene="parE"
                     /locus_tag="IBJ56_002170"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HAM3418417.1"
                     /translation="MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIV
                     DNSVDETLAGFGKKIVVTLHVDGSVSVSDEGRGMPVGMHKTGKSTVEVILTVLHAGGK
                     FGQEGGYKTSGGLHGVGSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGK
                     SKATGTTIRFKPDPAIFPTTSFNYETLSERLRESAFLLKGMLIELIDERVGMAEAFHF
                     EEGVKNFVEYINEGKDVLHPVASFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRG
                     AGSHESGMKAAMTRIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFE
                     GQTKEKLGTQEARQAVDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREE
                     TRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLR
                     GKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHI
                     QVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIG
                     KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDSARAERRVATLMGDKVEPRR
                     QWIEKHVEFSMEDSQNILENENMMVEEAKDI"
     gene            complement(5177..5584)
                     /locus_tag="IBJ56_002171"
     CDS             complement(5177..5584)
                     /locus_tag="IBJ56_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HAM3418418.1"
                     /translation="MQNPTKEEIQQILKKAKVIAVVGLSDKPDRTSYRVSQIMQQAGY
                     KIIPVNPNADEILGEKAVKRLTDIEEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQ
                     LGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD"
     gene            5743..6339
                     /gene="plsY"
                     /locus_tag="IBJ56_002172"
     CDS             5743..6339
                     /gene="plsY"
                     /locus_tag="IBJ56_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HAM3418419.1"
                     /translation="MTINLILLSLLAYVIGSIPSGLWIGKIFYKKDIRDFGSGNLGAT
                     NSFRVLGIKAGSIVTVMDILKGTVATLLPFFFQLNVDHHFWLLTGAFAIIGHSFPLFA
                     GFRGGKAVATSAGVILAYAPLLFVAALVVFLVTLKLSKYVSLSSMIGALAALIISLFM
                     GDWILIILVACIALFVIWRHRANITRIRNGEEPKIKWM"
     gene            complement(6381..>7094)
                     /locus_tag="IBJ56_002173"
     CDS             complement(6381..>7094)
                     /locus_tag="IBJ56_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HAM3418420.1"
                     /translation="RLVEDTYLVDGKPYHLGQHGFARDRDFQVIEQTEKSVRFELDAD
                     EDSLAVYPYKFKLSIIYTIEKNTVAVSYEVENTDNKRIYFSIGAHPAFNLPLTDGTTF
                     EDYYLDFGTEENLETLCLEGPYRSGEIKKVVDKPAQYLPLSYDLFKNDALIFEALKQK
                     EMTIKSDKTPHFVKVSFPEFPFVGVWTAKPGTPFLCIEPWYGIADGAGESVELRDKAG
                     IEHLEPEAVFASEYEITVG"
BASE COUNT         1863 a         1514 c         1261 g         2456 t
ORIGIN      
        1 attccgatag atgctttcat ttttattcac caaatacatt tttccattcg tctcgtttgt
       61 ctaaaaattc cgccgcaagc gcttttgcac cttctaaact atggcttgct gcccaaccgc
      121 attggacttc attgcatgca ggaacttctg tcgcagctaa aacatccgtt agtgttgtgg
      181 cgatgatttc tagtgcatca tcatagtcgc tatgattaat gaaggaaaca taaaagccag
      241 tttggcatcc cattggacta atgtctacta atttgtcagt atgatttctt gcaagttctg
      301 ccatcaaatg ttctaaagag tgtagcgctg gcatttccat atgttcttta ttaggttgtt
      361 tgaagcgaac atcatatttg tatatttcat ctccatggac gcccactttc gttcccgcca
      421 gtctcacaaa aggtgctttt actttcgtat ggtccaaatt aaaactttct acattcattt
      481 tttctgccat gcgtatccct cctcttattc tttgttatta tatcaaaaaa aagaatcctt
      541 gcatatttct atacaagaac tctttttctt ccttattcat cttttgcatc tgaggtatct
      601 tttatttcgg gtattgctag ccaaatagaa gttggttcgc cttccattgt ttcatcgagt
      661 acgaaggatc cgttagaata gcgatccgtt attcgtagat tggcaacgtc tatttcaaca
      721 atttggtctg tgtttgtttc gataaatagg tggtcgttat tatcagcaag agttatacca
      781 atgaagcgat gtggattgct tttcagttcg cgtaacatca ataagccacg tttcgctctt
      841 gagattggtt caaattcgct tgctttcatt tgtttgagtg agccacgttg tgtggcaaga
      901 agaatatgtt tttgttcgtt cggcataagg actataccgc caataactat atcatcttgt
      961 tttaagttaa tcgcttttac acccgctgtt cttgcacctg attctggaat ttcagtaata
     1021 gaataacgaa ggccgtaacc attttttgtt gctaagaaaa tatcttctgt gccatcaatc
     1081 aaatgaacat ttaacagctc atcgtcacct tttaatttaa ttgccatcat ggatttagaa
     1141 tagcgttgtg gtttgtaatt cgtaatagct gattgcttgg tcatgccgtt tttagtaacg
     1201 aataaaaagc gtttttcttc cgtaaaggct tgaattgcaa tagcagaacg gatttcttca
     1261 cctgccgata aatcactggc caagtgactt acgtgatctc cgaggttttt ccagcgaata
     1321 tctggcaact catgtactgg tcgataaatg aaattccctt tgctcgtgaa taacaggagc
     1381 gaatcaagtg aattcatttt ttggataaag atggcatggt ctgcttcttt catggctagt
     1441 tccgcaccgt ttgatgctgc ataagaacgt tggctcgtac gtttcacata gccttctttt
     1501 gtcacagaaa caatcacatc ttcattcgca acaagtactt ctgtatcgat tttgatttct
     1561 gtaatttctg cttgcacttc tgtacggcga gcagttttat attttttctt aatttccgct
     1621 agctcttctt ttaacacagc gataagctct gcttcatcac ctaggatttt ttcaagaaca
     1681 ctaatttgtt ctgctaagga ttttgcttca ctttgaagtt catgtatatc tgtatttgtt
     1741 aaacgataaa gttgtaaaga tacaattgct tctgcttgtt tttcgctgaa atcatatttt
     1801 gtttgaagat ttagttttgc atcgcgtttg tcttttgaac cacgaattaa tttaatgact
     1861 tcatctaaaa tagacaaagc tttaattaaa ccttctaaaa tatgttggcg agcgcgcgct
     1921 ttacgaatat cgtattcaga gcgcttcgta ataatttctt tttggtgttc aatataagcg
     1981 tcaagcattg ggataatgcc cattagctcc ggacgttttt tattaatagc aaccatgtta
     2041 aaattatagc ttacttgtaa atctgtattt ttaaacaggt agttcaaaac accttcagca
     2101 ttggcatctt tttttagttc aacagcaata cgaagtcctg tgcggtcggt ttcatcacgt
     2161 acttctgaaa taccttcaat ttttttctca attcgaagtt catccatgcg tttaactaaa
     2221 ttagctttat ttacttcata tggaatttca tgaattgtaa tttgttttct accgccacga
     2281 atatcttcaa tttctgtttt agaacgaacg acaacgcgtc cttttccagt ttgataagct
     2341 tttcgaatac catcaatccc ttgaataatc ccacctgttg ggaaatctgg acctttgaca
     2401 attttcataa tatcatccgt tgtggaaagt gggttatcta atcgtttaat aacagcttcg
     2461 atgatctctg ttaaattatg cggcggaata tctgttgcat aaccagcgga gataccggta
     2521 gaaccattca ctaaaaggtt tggaaaacgt gctggtaaaa cagttggctc actagatgtg
     2581 tcatcaaagt taggaataaa gtcaactgtt tccttttcaa tatcgcgtaa aagttctgct
     2641 gatataggag aaaggcgagc ttctgtataa cgcattgctg caggcggatc cccgtcgaca
     2701 ctgccgttat taccatgcat ttcaatcagc atattacgta ctttccagtc ttgactcatc
     2761 cgtaccattg cttcgtaaac tgaagagtca ccatgtggat ggtagttacc aataacgttt
     2821 ccgaccgttt tagcagattt acggaaacct ttctcagcag tatttccttc gacattcatc
     2881 gcgaataaaa tacgacgttg tacaggtttc agtccgtcac gaacatctgg aagcgcacgt
     2941 tcttgaataa tatatttact atatctacca aaacggtcgc ccataacttc ttctagcgct
     3001 aagtcttgga tatgttgttc tggattactc aaatgtcttt cgcctcctca accatcatgt
     3061 tttcattttc taaaatattt tggctatctt ccatagaaaa ctcgacatgc ttttcaatcc
     3121 attgtcgtct tggttctact ttgtcgccca tcagtgtggc cacgcggcgt tcagcgcgtg
     3181 cagaatcatc tacccgtaca cgaattaacg tgcgcgtatc aggattcatc gttgtttccc
     3241 aaagttggtc agcattcatc tcaccaagac ctttgtatcg ttgaatcatg tagcctttac
     3301 caattttttg gatggcagag tctaattctt catctgtcca agcatattcg attacttctt
     3361 ttttaccaga accacggctt actttgtaaa gtggtggtaa ggcaataaat actttacctg
     3421 cttccactag tgggcgcata taacgataga aaaaggttaa tagtaatact tgaatgtgtg
     3481 cgccatcggt atcggcatcg gtcatgataa ctactttgtc atagttacaa tcttctacat
     3541 cgaactccgt accaactccc gcaccaactg tatggataat cgtactaatt tcttcatttt
     3601 tcaagatatc ttgtagtttg gctttttctg tattgattac ttttcctcga agtggcaaaa
     3661 ttgcttggaa acgacggtca cgaccttgtt tagctgatcc ccccgccgag tcaccttcga
     3721 ctaggtaaag ttcattttta ttaggatttc gcgattgtgc cggtgttaat tttccagaaa
     3781 gaagtgtttc ggaacgtttc tttttcttgc cgttacgtgt ttcttcgcgc gcttttctgg
     3841 cagcttctct tgcttcgcgg gctttaacag cctttttaac tagaagagag cttgtttctg
     3901 ggttttcggc aaggaagtaa gctaaatgtt ctgctacaac tgcatcaacc gcctgacgag
     3961 cttcctgcgt ccctagtttt tctttcgttt gaccttcgaa ttgaaggatt ttttctggaa
     4021 cacggataga aagtacagct gataaacctt cacgaatatc gctaccttca aggtttttat
     4081 ctttttcttt taaaagattc acacgacgag cataatcatt gaaaatccgc gtcattgccg
     4141 ctttcattcc agattcatgc gagcctgctc cgcgagttcg aacgttatta acgaaactca
     4201 agatattttc agaataacca tcattgaatt ggaacgccat ttctacttca atggtcgcat
     4261 tttccccttc aaagctagct acaggatgaa gcacatcttt accttcatta atatattcaa
     4321 caaagttttt cacaccttct tcaaagtgga aagcctctgc catgccaact cgttcatcaa
     4381 ttaattcaat taacatccct tttaaaagaa atgctgattc tcttagacgt tctgataagg
     4441 tttcatagtt aaatgaagtc gttggaaaaa ttgctggatc tggcttaaag cgaatcgttg
     4501 tcccagtagc ttttgatttt ccgatttttt tcagtgttcc atctggcttt ccgccgtctt
     4561 taaatttttg ttggtaggtt gcgccgtcac gattaattgt aactactaac cattcagaga
     4621 gcgcatttac aacggatgaa ccaacaccgt gaagcccacc acttgtttta tatccgcctt
     4681 cttggccgaa cttaccaccg gcgtgaagaa cagttaaaat aacttctacc gtagacttac
     4741 ctgttttgtg catcccaaca ggcatcccac gaccttcatc gctaacacta acactgccat
     4801 ccacgtgaag tgtcacaaca attttcttac caaaacctgc aagggtctca tcgaccgagt
     4861 tgtccactat ttcatatact aaatggtgca gcccgcgtac atctgttgaa ccgatataca
     4921 tcgctgggcg tttccggacc gcttccagtc cttcaagcac ctgaatagaa tcatcattat
     4981 actcattccg attcatattt caaaactccc ttcattccgt caatctacaa ctttcacgtt
     5041 gttattcgct taaaaccact ttatcagaat agcattaact agctgattaa taaagtgata
     5101 gtttagtgac aaattccttt tcataaaaaa acaggctctg ctataagaac ctgcttcctt
     5161 caaaaatggt gtttaattaa tccatttctt gataagcaac cttaatgcaa taatccatga
     5221 cagtaggata tcctttttct gtcaaaaaat caaatgcttc ctgattagct atgccaagct
     5281 gtgcccaaaa tacatctgca tctatttggt caaaagcctc cgctatttca ggtaaaaact
     5341 ctgagcgacg aaagacattc acaatatcca catgttcctc gatatccgtt aaacgcttga
     5401 cggctttttc gccaagaatt tcgtctgcat tagggttcac tggtataatt ttgtacccag
     5461 cttgctgcat tatttgactc actcggtaac ttgtgcggtc tggtttatca ctcaaaccaa
     5521 cgactgcgat tacttttgcc ttctttaaga tttgctggat ttcttctttt gttggatttt
     5581 gcattagtct aatcgccctc ctactattct ttctaatcat aagctatttt tgcggttttt
     5641 tcaacttttc atcgtgattt gtcctaacaa tttagccaat cttcttcatt ttgtgctata
     5701 attctttatg gaaaacatca tttcttcttg aggggtttaa aaatgacaat taatttaatt
     5761 ctgctttctt tattagccta tgtgattggt tcgataccgt ctggtttatg gattggcaaa
     5821 attttttaca aaaaggatat tcgcgatttc ggtagcggta atttaggcgc gacgaattca
     5881 ttccgggttc tcggaatcaa agccggtagt atcgtgacag tgatggacat tttaaaaggg
     5941 actgtcgcaa cgttgcttcc atttttcttt caattgaatg tagaccatca tttttggttg
     6001 ctaactggag catttgctat tattgggcat agtttcccgc ttttcgcagg atttagaggc
     6061 ggaaaagcag ttgctacttc ggcaggtgtc atccttgcct atgcaccatt actctttgta
     6121 gccgcacttg tagtcttctt agttacactt aaacttagca aatatgtatc gctcagctcg
     6181 atgattggag cacttgcagc gttaattatt tctcttttca tgggagactg gattttaatt
     6241 attcttgttg cttgtatcgc actctttgtc atctggcgtc accgagcaaa tatcactcgg
     6301 attcgtaacg gcgaagaacc caaaataaaa tggatgtaat aaaacccaga agatgcattt
     6361 cgctcttctg ggttttcgtt ttaacctact gtaatttcat attcggaagc aaagacagct
     6421 tctggctcta aatgctctat tcccgcttta tctcgcagtt caacagattc tccagcacca
     6481 tctgcaattc cgtaccacgg ttcaatacat aagaaagggg tccccggttt tgccgtccaa
     6541 acacctacaa atgggaattc tgggaaagat acttttacaa aatgaggtgt tttatctgat
     6601 ttgatggtca tttctttttg ttttagtgct tcaaaaataa gtgcatcgtt tttaaataaa
     6661 tcatagctca gtggtaagta ttgtgctggt ttatcgacaa ccttcttaat ttcgccactg
     6721 cggtatggcc cttctaaaca aagtgtttct aaattctctt ctgttccgaa atccaaataa
     6781 taatcttcaa atgtcgtccc gtctgttaat ggtaaattaa aagctgggtg cgcaccaata
     6841 gagaaataaa ttcgcttgtt atccgtattt tcaacttcgt aggaaacagc taccgtattt
     6901 ttttctattg tataaataat cgatagttta aatttgtagg gataaactgc taatgaatct
     6961 tcgtctgcat ccaactcaaa acgtaccgat ttttctgttt gctcgattac ttgaaaatca
     7021 cggtcacggg caaacccgtg ttgccctaag tggtacggct ttccatcgac taagtaagta
     7081 tcttctacaa gcct
//
LOCUS       DABQVC010000147         7081 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.147,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000147 DABQVC010000000
VERSION     DABQVC010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7081
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.147"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..272
                     /locus_tag="IBJ56_002174"
     CDS             <1..272
                     /locus_tag="IBJ56_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HAM3418421.1"
                     /translation="RAKDPFASLMCYGIASLIAIQAFINLGGASGLIPLTGVTLPFIS
                     YGGSSLMVLSMMLGIVANISMFTKYQRVYKADGSTRELPKKQKRR"
     gene            550..3990
                     /locus_tag="IBJ56_002175"
     CDS             550..3990
                     /locus_tag="IBJ56_002175"
                     /EC_number="6.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate carboxylase"
                     /protein_id="HAM3418422.1"
                     /translation="MNRIKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHR
                     YKSDEAYLVGAGKKPIDAYLDIENIIEIAKESGADAIHPGYGFLSENIEFARRCEQEG
                     IIFVGPKSKHLDMFGDKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMI
                     KASLGGGGRGMRVVESKEHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILG
                     DTHGNIVHLFERDCSIQRRHQKVVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGT
                     VEFLVEGDDFYFIEVNPRVQVEHTITEMITGIDIVQSQLFIADGYALHDQLVAIPKQE
                     DIHIHGSAIQSRITTEDPLNNFMPDTGRVDTYRSTGGFGVRLDAGNGFQGTVVTPFYD
                     SLLVKLCTWGMTFEQATRKMRRNLIEFRIRGVKTNIPFLLNVVRHPDFASGNYNTSFI
                     DTTPELFKFPHIRDRGTKTLRYIGNVTVNGFPGIKHRDKPVYAEPRLPKIPYGSQISP
                     GTKQILDAKGPEGVVDWVKKQEEVLLTDTTLRDAHQSLLATRVRSKDIFQIADAMAHL
                     LPNMFSFEMWGGATFDVAYRFLNEDPWVRLETLRKQIPNVMFQMLLRGANAVGYKNYP
                     DNVIREFVKQSAQSGVDVFRVFDSLNWIKGMEVSIDAVREAGKIVEAAICYTGDIDDD
                     TRTKYTIDYYKDMAKELVAQGTHILGIKDMAGLLKPQAAYRLIGELKDTVDVPIHLHT
                     HDTSGNGIYTYAAAVSAGVDIVDVASSAMSGATSQPSMTGLYYGLVNGNRQTNLDAQN
                     SQIINHYWEDVRHYYKDFDNALNSPQTEVYIHEMPGGQYTNLQQQAIAVGLGDRWDEV
                     KEMYTVVNQMFGDIVKVTPSSKVVGDLALFMVQNELSEEDVYEKGDTIDFPDSVIEFF
                     MGEIGQPYGGFPEKLQKLVLKGRTPLTDRPGALMEPVNFVEVKAELKEKMGYEPTEKD
                     VISYILYPKVFLDYQEMINKYGDVTVLDTPTFYKGMRLGETIEVELEKGKILLIKLNS
                     IGEPIADGTRVIYFELNGQPREINIQDMNVQSTVIARRKIDTTNPEHVGATMTGSVIQ
                     VVVKKGDSVKKGDPLLITEAMKMETTIQAPFDGEVSSIYVSDGDTIESGDLLIEVNRI
                     "
     gene            4144..5037
                     /locus_tag="IBJ56_002176"
     CDS             4144..5037
                     /locus_tag="IBJ56_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAM3418423.1"
                     /translation="MKWFKGIAVVLLLAILTACGNTEVKETTKQTEEIKVKDATGETI
                     TLKKAPTKIVSLIPSNTEILFALGLGDEVKGVSAYDDYPKEAQKIEKVTSTSVDTEKI
                     IALKPDLVLGHESMLATEKDAYKILTDAGINVFVVPDATNLKEVEKSIATIGDLTGTE
                     KEATKVTDSMEKQKIAIEKKAKELKTSPKVWIEISPDLYTAGKGTFMNEMLELAGGTN
                     IVTESGFIPYNEEKVVELQPDIILSVYPDAKATIQKRAAWKDIPAVKNDKIYEMDANK
                     LSRPGPRLLEGAADIQAVLEN"
     gene            5319..6122
                     /locus_tag="IBJ56_002177"
     CDS             5319..6122
                     /locus_tag="IBJ56_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418424.1"
                     /translation="MKQVMEVIKEQIKNLPMIFRIARYEDKATYQSHYLGLAWQILNP
                     LIQIAIYYFVFGFGMNAKSGSDASYIEWMLAGIIPWFFISAVILQGANSIYNKIGMVS
                     KMNFPMSILPNITIVSNLTSYFTMMVILLGLLAINGTPITIYWGQYLYYFVAMIAFLF
                     SVTLFNATISVLVRDYYIMLQSVMRVLFYVTGIVWNLETMLPQWLVDLLKLNPIYYVV
                     NGFRETFLMNKGFWESPSYTMYFWLITLTLLFVGATLHMKFRERFVDYL"
     gene            6135..>7081
                     /gene="tagH"
                     /locus_tag="IBJ56_002178"
     CDS             6135..>7081
                     /gene="tagH"
                     /locus_tag="IBJ56_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acids export ABC transporter
                     ATP-binding subunit TagH"
                     /protein_id="HAM3418425.1"
                     /translation="MGKNIKVSFKHVSKEYDLYQNKSDKIKGLFMPKSQKMQSFWALR
                     DVSFDIHDGETVGLIGINGSGKSTISSIMSGVIPPTQGEVIINGETSLIAIAVGLKGP
                     LTGYENIRLKLLMHGMKSSQINKLMPSIIEFADIGDFINQPIKNYSSGMRSRLGFAIS
                     VHTNPDILVIDEALSVGDQTFYEKCVDKINEFKARGKTIVFVSHSLGQVKSLCDRIIW
                     MHHGEIREMGTAQEVAQKYDEFVKWFNKQPNDYKKKYQKEHKENQKAPQKKIYPNPNA
                     NKYRLTLFDKIFLTVLIALTILFGTLVATGKSFKGLISE"
BASE COUNT         2408 a         1148 c         1450 g         2075 t
ORIGIN      
        1 tcagggcgaa ggatccattt gcctccttaa tgtgctacgg gattgctagt ctgattgcga
       61 ttcaagcatt tattaatctt ggtggagcta gtggtttgat tccgcttact ggtgtaacgc
      121 tgccatttat tagttatggt ggatcttcct taatggtgct ctcgatgatg cttggtatcg
      181 tagcgaatat ttcaatgttc actaaatacc aacgtgttta taaagcagat ggttccacga
      241 gagagttacc aaagaaacaa aaaagacgtt aaattatgaa gaaaaagcta attaattagc
      301 tttttctttt tttgctttac cgcatgtttt tggcgtttta tagccagttt attcgtgttt
      361 tcgatattgt tttaaatatt tagaaagaaa ataatttaca tctgatggta tttaatacta
      421 taattgaagt tatataccgt tttacagcct aaaaaaaggg gattatcata taagtgtaca
      481 taatcatttc aaccgttgga ggctatgtat aaagtataga acagatcagt gttggttagg
      541 aggaaaaaaa tgaatcgaat taaaaaagta ttagtagcaa accgcggaga aattgcaatc
      601 cgtgttatgc gtgcgtgtac tgaactcaaa atcaaaacag tggctattta ttcacaagaa
      661 gataccggaa gttttcaccg gtataaatca gatgaagctt atctggttgg agcagggaaa
      721 aagcctattg atgcgtatct agatatcgaa aacataatag agattgctaa agaatctggt
      781 gcagacgcga ttcatccggg atatggtttc ttgtccgaaa acattgaatt tgctcgtcgt
      841 tgtgagcaag aaggcattat tttcgttggt cctaaatcaa aacacctaga tatgtttggt
      901 gataaaatca aagcaaaaga acaagctcta ttagctgata ttccagtaat tccgggaagt
      961 aatggacccg tggctggtat taaagaagta gaagaatttg gtgagaaaaa cggttaccca
     1021 ttaatgatta aagcttctct tggaggcggc ggtcgtggta tgcgtgtcgt agaatcaaaa
     1081 gaacatgtca aagaaagctt tgaacgtgca tcctcagaag caaaagcggc atttgggaac
     1141 gatgaagtat acgtagaaaa atgcgtgatg aatccgaaac atatcgaagt acaaattctt
     1201 ggggacaccc atggcaacat cgttcattta tttgaacgtg attgttctat ccaacgtcgt
     1261 catcaaaaag tagtagaggt agcgccatgt aatgcgatta cttctgaact acgtaaccgt
     1321 atctgtgatg ctgcagtaaa attaatgaaa aatgttgatt acattaatgc tggaacagtt
     1381 gaatttttag tggaaggcga tgatttctac tttatcgaag taaatcctcg tgtccaagtg
     1441 gagcatacaa ttactgaaat gattacaggg attgatattg ttcaatcaca actattcatt
     1501 gcagatggtt acgcgcttca cgaccaacta gtagctattc ctaagcaaga ggatatccat
     1561 attcacggtt ctgctattca aagccgtatt acaacggaag atccacttaa taactttatg
     1621 ccagatactg gtcgagtaga tacgtatcgc tctacaggtg ggtttggagt tcggttggat
     1681 gctggtaacg gcttccaagg aacagtagta acaccatttt atgattcctt acttgtaaaa
     1741 ttatgtactt ggggaatgac attcgaacaa gcaacgcgca aaatgcgtcg taacttaatt
     1801 gaattccgta tccgtggtgt caaaacgaac attcctttct tattaaatgt tgttcgtcat
     1861 ccggattttg caagtggtaa ttataataca agctttattg atacaacacc ggaactattt
     1921 aaattcccac atattcgcga ccgtggtaca aaaacgttgc gttatattgg taatgtaacg
     1981 gttaatggtt tcccaggaat taagcaccgt gataaacctg tatatgcaga accacgcttg
     2041 ccaaaaattc cgtatggttc gcaaatctct ccaggtacaa aacaaatttt ggatgcaaaa
     2101 ggtccagaag gcgttgtaga ctgggtgaaa aaacaagaag aagtgctctt aacagacact
     2161 acacttcggg atgcgcacca atctttactt gcaacacgtg ttcgctcgaa agacattttc
     2221 caaatagcag atgcgatggc tcatttatta ccaaacatgt tttcctttga aatgtggggt
     2281 ggcgcgactt ttgacgtggc atatcgtttc ctaaatgaag atccttgggt gcgcctagag
     2341 acacttagaa aacaaattcc aaacgtgatg ttccaaatgt tacttcgcgg agctaatgca
     2401 gttgggtata aaaactatcc tgacaatgtt atccgtgaat tcgttaagca atcagcacaa
     2461 tccggtgtgg atgtattccg cgtgtttgac agcttaaact ggatcaaagg catggaagtg
     2521 tccattgatg ctgttcgtga agcagggaag atcgtagagg ctgctatctg ctatacagga
     2581 gatatcgatg atgacacaag aacgaaatat accatagatt actataaaga tatggcgaaa
     2641 gagctcgttg ctcaaggcac gcatatccta ggaatcaaag atatggctgg gcttttaaaa
     2701 ccacaagcgg cataccgttt gattggcgaa ttaaaagata cagtagatgt tccaatccac
     2761 cttcacacgc atgacacaag cggcaacggt atttatactt acgcagcagc tgtcagtgct
     2821 ggcgttgaca ttgtggacgt ggcatcaagc gcaatgagtg gggctacaag ccaaccaagt
     2881 atgactggtc tttattacgg attagtgaat ggtaatcgtc aaacgaattt agacgctcaa
     2941 aattcccaaa tcattaatca ttactgggaa gatgttcgtc actattacaa agactttgac
     3001 aatgcactta attcacctca aacagaagta tacattcatg aaatgccagg tggtcaatat
     3061 actaaccttc aacaacaagc cattgcagtt ggacttggcg atcgttggga cgaagtgaaa
     3121 gaaatgtata cagtggttaa tcaaatgttt ggtgatatcg ttaaagtaac accttcttcc
     3181 aaagttgttg gagacttagc actatttatg gttcaaaatg aattatccga agaagatgta
     3241 tacgaaaaag gcgataccat tgatttccca gattccgtta tcgaattctt tatgggggaa
     3301 attggtcaac catacggcgg cttcccagaa aaacttcaaa aactagtact caaaggacgt
     3361 acaccactta cagatcgtcc aggcgcttta atggaaccag ttaactttgt tgaagtcaaa
     3421 gcagaattaa aagaaaaaat gggttatgaa ccaactgaaa aagatgtcat ttcctatatt
     3481 ttgtatccaa aagtgttcct agattatcaa gaaatgatta ataaatatgg tgatgtaaca
     3541 gtccttgata caccaacatt ctataaagga atgcgtttag gggaaacaat cgaagtagaa
     3601 cttgaaaaag gaaaaatcct tttaatcaag ctaaattcta ttggtgaacc aattgcggat
     3661 ggcacacgtg ttatctattt tgaattaaat ggacaaccac gtgagattaa catccaagat
     3721 atgaacgttc aatccactgt tattgcacgc cgtaagattg atacaactaa tcctgaacat
     3781 gttggagcta caatgacagg ttcagtcatt caagtagttg ttaaaaaagg cgactctgtg
     3841 aaaaaaggtg atccactact aatcacagaa gcaatgaaaa tggaaacaac gattcaagcg
     3901 cctttcgatg gagaagttag cagcatttat gtttctgacg gcgatactat cgaatctggt
     3961 gatcttttaa ttgaagtaaa cagaatttaa aaacataaat gactaacggg tgggaatatg
     4021 acgctaattt aaagtgaaga actttaaaaa tcgataagtt aaacgtgaga ataaagacgt
     4081 ttttccagat ttattagtgt tagatttccc gcctgttttt tctgaaaaaa ggagaacata
     4141 catatgaaat ggtttaaagg aattgccgta gttttattgc ttgctatttt aactgcatgc
     4201 gggaatacgg aagtaaaaga gacaacaaag caaacagaag aaatcaaagt gaaagatgca
     4261 actggtgaaa caattacact gaaaaaagct ccaactaaaa ttgtttcatt aattccaagt
     4321 aatacagaaa ttttatttgc actaggactt ggtgatgaag taaaaggagt atcggcatat
     4381 gatgattatc caaaagaagc tcagaaaata gagaaagtga cttctacttc agttgataca
     4441 gaaaaaatta ttgctcttaa gcctgattta gttcttggac acgaatcgat gcttgcaaca
     4501 gaaaaagacg cttataaaat acttacagat gcgggaatta acgtgtttgt agttccagac
     4561 gcaacaaact taaaggaagt agaaaaatcg attgctacca ttggtgatct aactggaaca
     4621 gaaaaagaag ctacaaaagt gaccgattca atggagaaac aaaaaatagc tattgaaaag
     4681 aaagcgaaag aattaaaaac atccccaaaa gtatggattg aaattagtcc agacttatac
     4741 acagcaggaa aaggaacatt tatgaatgaa atgttagaac ttgctggtgg aactaatatt
     4801 gtaacagaat cagggttcat tccttacaac gaagaaaaag tagtagaact gcaaccggat
     4861 atcattttat ctgtctatcc agatgccaaa gcaactatcc aaaaacgtgc agcatggaaa
     4921 gatattccag cggttaaaaa cgataaaatc tatgaaatgg atgccaataa attaagtcgt
     4981 ccaggaccaa gattgcttga aggggcagca gatattcagg ctgttcttga aaactaattc
     5041 tttgataatt gcagatgaag ctttacaaaa aatgactttt aaggtaattt aacatagggt
     5101 ggatttttta ctaaaccgta ttagtaaaat aatttgccaa ataagcagag ctatatacac
     5161 ttagaagatc atgcataaac agcaagaata tggcaaccga gacgacaaat aatacaaaca
     5221 aggtgtctgt ggttttaagt ggaggagttg cctataaaag aatagtgagc tgaatctggt
     5281 tattaaaacc atattatttt tcgggaagaa gtgtttttgt gaaacaggtt atggaagtta
     5341 ttaaagaaca aataaaaaat ttaccaatga tatttcgcat tgcgcgctat gaagataagg
     5401 ctacatacca aagccattat ttaggactag catggcagat tttaaatcca ttaatacaaa
     5461 ttgctattta ttattttgtg tttggatttg ggatgaatgc aaaatctgga tcggatgcaa
     5521 gttatattga atggatgcta gcggggatta ttccttggtt ctttattagt gcagttattt
     5581 tgcaaggtgc gaatagtatt tataataaaa taggcatggt ttcaaaaatg aatttcccaa
     5641 tgagtatttt acctaatatc acgattgtct ctaatttaac aagttatttt actatgatgg
     5701 taattttgct aggcttgctc gcaattaatg gaactcctat tacaatctat tggggtcagt
     5761 acttgtatta ttttgtagcc atgattgctt ttctcttcag tgttacttta tttaatgcaa
     5821 caattagcgt tttagtaaga gactattata ttatgctgca atctgtcatg cgtgtacttt
     5881 tttacgtaac agggattgtt tggaatttag aaacaatgtt gccgcaatgg ctagtagatt
     5941 tactcaaact aaatccgatt tactatgtgg taaacggctt tagagagaca ttcttaatga
     6001 ataaaggctt ctgggaatct ccatcataca cgatgtattt ctggttaatc acgctaacat
     6061 tactatttgt tggtgcgaca ctacacatga aattccgcga acgcttcgtg gattatttat
     6121 aggaggttag acagatgggt aaaaatataa aagtatcatt taaacatgtg tcgaaagaat
     6181 atgacctcta tcaaaataaa tctgataaga tcaaaggctt gttcatgccg aaaagtcaaa
     6241 aaatgcaatc cttttgggcg ttgcgagacg tatcttttga tattcatgat ggtgaaacag
     6301 taggacttat tgggatcaat ggttctggta agtcaactat atcgagtatt atgtcaggtg
     6361 ttattcctcc gacacaagga gaagtcatta tcaacggaga aacttcttta attgccattg
     6421 cagtgggact aaaaggtccg ctgacgggtt atgaaaatat tcgcttgaaa ttactcatgc
     6481 atggaatgaa aagttctcaa attaacaagt tgatgccaag tattatcgaa ttcgctgata
     6541 taggtgattt tattaatcaa ccaattaaaa actattcaag cgggatgcgt tctcgtttag
     6601 gttttgcaat ttcggtgcat accaatcctg atattttagt tattgatgaa gccttatcag
     6661 tgggtgacca gactttttat gagaaatgcg ttgataagat taatgaattt aaagcgcgtg
     6721 gcaaaactat tgtttttgtc agtcactcac ttggacaagt aaaaagtttg tgtgacagaa
     6781 ttatttggat gcatcacggt gaaataagag agatgggtac agcacaagaa gttgctcaaa
     6841 aatatgatga gtttgtaaaa tggtttaaca aacaaccaaa tgattataag aaaaaatatc
     6901 aaaaagagca taaggaaaat caaaaagctc ctcagaaaaa aatctatcct aatcctaatg
     6961 ccaataaata caggctaact ctttttgata aaatattttt aactgtgcta attgcattaa
     7021 cgatactatt tggaacacta gtggcgacag ggaaatcttt taaaggctta attagtgaag
     7081 a
//
LOCUS       DABQVC010000148         6915 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.148,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000148 DABQVC010000000
VERSION     DABQVC010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6915
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.148"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            35..1777
                     /locus_tag="IBJ56_002179"
     CDS             35..1777
                     /locus_tag="IBJ56_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HAM3418426.1"
                     /translation="MTTYDLAPEVKIHQFDGAWAGYKDIATELRTAIQKKKQDQTIVA
                     IECYPGTRNEEIAAELLPLLPVEKVVFADDWALNNEEVTATIQSHLTDDRVFGIMSHY
                     EVSDFYPAEKLAEIQAEIAATKGLVVVYGTGATVIAPTPDILIYADLARWEIQCRYRG
                     ENKPNWKADNAGEDALRKFKRGYFFEWRMADRQKKKLYQQVDFLLDTNKKNEPKMVRG
                     EDYRNGLNQVSKAPFRVVPYFDASVWGGQWMKNNFGLDPAADNYGWAFDGVPEENSLY
                     MRFGDIRIEVPSTNVVNHFPNELLGPKVHSRFGTEFPIRFDYLDTVGGGNLSLQVHPL
                     VEYAQDKFGIHYTQDESYYILEADNDSTVYLGTKEGTTKEAIMTDLEKAAEGNYRFPD
                     EKYINVFPVKKHDHILIPAGTIHCGGPSTVVLEISATPYIFTFKLWDWERTGLDGMPR
                     PVHLEHGRENLQLDRDTKWVKDNLINQFETLHEDNDSKVERTGLHELEFIETHRHWFK
                     ETVTVHTNDSVNMLNLVEGESAVVESIDDSFAPFEVHYGETFIVPAIVGTYQIRNTSD
                     NEEVAVIQAFVRNL"
     gene            complement(1816..2550)
                     /locus_tag="IBJ56_002180"
     CDS             complement(1816..2550)
                     /locus_tag="IBJ56_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3418427.1"
                     /translation="MVRKLNKMYDASPLYAQIADDLRDKIQSEVWQTGDKIPPELDLC
                     ELYNVSRITVRKAIDELVRENLLYRERAKGTFVRDWEEAEDEHFTLVRSFTNEMKELG
                     KKAATLHAEVEVINADKKIALQLGLSVGDKVLQIKRLRGTKDLAFALFISFIPYNQDY
                     SLKAEDYYGSFYEYLKGFGIVVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTK
                     QKESDFREYSECFYIGKHYRYYIDFE"
     gene            complement(2665..3681)
                     /locus_tag="IBJ56_002181"
     CDS             complement(2665..3681)
                     /locus_tag="IBJ56_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIC"
                     /protein_id="HAM3418428.1"
                     /translation="MKEYFIDRSYKASMGIANAVLVTLGIGLLLQTIGQMTGISFLVT
                     VGAIGKTMLIPGIGVGIAMCLHANTLVTISAAASAVIGGGAVATLAGGGVAITSGEPV
                     GAILAVIVAVWTGKRVTGKTKFDMILIPGVSLLAGGLSGILFAKIMAPILASVSLGIS
                     SLIGGSPLISSMVIAFVFGLLILSPASSAALAIALQLDPTASAAALIGCSVQFVSFAV
                     LSYRDNNWGAFFAQLICTPKLQTPNIIRKPSLMIVPLLTTLIAGPLGVMVFHIQAASE
                     VAGLGLCAFVAPLYLIANYGFSTLAAFILVAVVLPGVIALIVRPFLIKKERLKTGDLT
                     IELQ"
     gene            complement(3750..4604)
                     /locus_tag="IBJ56_002182"
     CDS             complement(3750..4604)
                     /locus_tag="IBJ56_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3418429.1"
                     /translation="MDEALRTYIRVVELQSFTKAAEELHISQPAVSLQLKKLEEIYET
                     ELIYRQAKKFILTATGEILYHRAKQLEGLYKQVEDEISLYHHHLKGRLRIGASFTIGE
                     YFLPEVIAKFHALYPDITIELIIENTAKIADKVELLQVDTGLIEGQVSKKDLEISAFS
                     DDEMCIVGRADGSLTEIEQGATWIAREEGSGTREYLDHVLSTNGWNVAEKVVAWSNMA
                     VKQMVLEGMGYTVISKCVVQTEITSGKLQTFNEAGSLMRKFSVLKNRQRLENRIAETF
                     LTFLKENQ"
     gene            4710..5717
                     /locus_tag="IBJ56_002183"
     CDS             4710..5717
                     /locus_tag="IBJ56_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family putative sulfate export transporter"
                     /protein_id="HAM3418430.1"
                     /translation="MSQILFKTKTFWYGIALTFCIATLSYFLAKLPFLMILGQLVTAI
                     LIGIIIRALFPVPEKWFTGIQFSNKVILRAGIILLGFRLNLVDIYHAGWRVFLIAALC
                     LSFGITIVYFLAKLFGVDKKLAILVACGTGICGAAAVVAISPQVKADNNQTAVAATII
                     ALLGTIFTVIYTLIYPILPLGPDGYGIFAGATLHEIAHVIAAADPGGSSAVDMAVIVK
                     LTRVALLVPVCFVVAKMVNAGTKNRFSWAELPVPWFIFGFLATSAINSFGIIPTSVTD
                     FLVICAYFLIAMSMGGLGLNVHLPSFGKMGGKPFAAALIGSVFLSAFGLALVLLFHLA
                     G"
     gene            5773..6414
                     /locus_tag="IBJ56_002184"
     CDS             5773..6414
                     /locus_tag="IBJ56_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HAM3418431.1"
                     /translation="MTKAIWTCRAFLLGYFLVLHFTADTYTFLILNVGLAYIPFEIAV
                     FLTKKPRVWWIFWPLGIVWLVFFPNAPYLLTDLLHLQRLEIYGAEGILSTAPWLWRHF
                     TYIIVGVFFGLFIGFWSFAKMLAEIRRRFNWTSLLSYQLLLIGLILLSSYAIYIGRFS
                     RLHSIHLLTQPIDSLQIMFSVFHWPFWNFVFYFSIIQYVIYTLFSRFSSSLKN"
     gene            complement(6464..6781)
                     /locus_tag="IBJ56_002185"
     CDS             complement(6464..6781)
                     /locus_tag="IBJ56_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase
                     family protein"
                     /protein_id="HAM3418432.1"
                     /translation="MDFKEYQILANRTAATHEQALTNYGLGITGEAGEVADLIKKYAF
                     HGHDLDKESLTKELGDVLWYVSQIAKWADISMETVAELNIEKLKRRYPQGFSTERSKL
                     HID"
BASE COUNT         2036 a         1415 c         1230 g         2234 t
ORIGIN      
        1 attgtaataa caatataatc aaggagtgat tgttttgacc acgtacgatt tagcacccga
       61 agtgaaaatc caccaatttg atggtgcttg ggcgggttac aaagatattg ctacagaact
      121 aagaacggct attcaaaaaa agaagcaaga ccaaactatc gttgcgattg aatgttaccc
      181 cggaacacga aatgaagaaa tcgctgccga actacttcca ttattaccag tcgaaaaagt
      241 ggtttttgca gatgattggg cattaaacaa tgaagaagta acagctacaa tccaatctca
      301 cttaacagat gaccgggtgt tcggaattat gtcccactat gaagtgagcg acttttatcc
      361 agcagaaaaa cttgctgaaa ttcaagcgga aattgctgct actaaagggt tagttgtggt
      421 ttacgggact ggcgcaactg ttatagcacc aacaccagac attcttattt atgctgattt
      481 agctcgatgg gagattcagt gccgctaccg cggagaaaat aaacctaact ggaaagcaga
      541 caatgccggt gaagatgcgc ttcgtaagtt caagcgtggt tatttcttcg agtggcgcat
      601 ggctgatcgg caaaagaaaa agctttatca acaagtagat ttcttacttg ataccaataa
      661 aaaaaatgag ccaaaaatgg tgcgcggaga agattatcga aatggcttga atcaagtttc
      721 caaggcccct tttagagtag ttccttactt tgatgcaagt gtatggggag gtcagtggat
      781 gaagaataac tttgggcttg atcctgcagc tgataattac ggctgggcat ttgacggcgt
      841 tccagaagaa aatagtttat acatgcgatt tggagatatt cggattgaag ttccgtctac
      901 caatgtagta aaccattttc cgaatgaatt acttgggcca aaagtacata gccgtttcgg
      961 tacggaattc ccgattcgtt tcgactatct cgatacagtg ggtggaggga atttaagtct
     1021 gcaagtccat ccattagtag agtatgcgca agataagttc ggtatccatt atacccaaga
     1081 tgaaagttat tatattttag aagcagataa cgactctacc gtgtatcttg gaacaaaaga
     1141 aggtacaaca aaagaagcga ttatgacaga tttagaaaaa gccgctgaag gaaattaccg
     1201 ttttcccgat gaaaaatata ttaatgtctt ccctgtaaaa aaacatgacc atattttaat
     1261 tccagctggg acgattcatt gtggtggtcc aagtaccgtc gtcctagaaa ttagtgcaac
     1321 tccttatatc ttcacgttta aattatggga ctgggaacgc actggactcg atggcatgcc
     1381 tcgccctgtt catttagagc acggcagaga aaatttacag cttgaccgcg acaccaaatg
     1441 ggtaaaagac aacttaataa accaatttga aacattacat gaagataacg attcaaaagt
     1501 agagcgcact ggtttgcatg aattagaatt tattgaaacc caccgccact ggtttaaaga
     1561 aacggttacc gtccatacaa acgatagcgt caatatgctc aatttggtag aaggagaaag
     1621 tgctgtcgtt gaaagtattg acgactcttt cgcaccgttt gaagtgcatt atggagaaac
     1681 atttatcgtt cctgcgattg tcggaactta tcaaatcaga aatacgagcg ataatgaaga
     1741 agtggctgtt attcaagctt ttgtacgtaa tttataaaaa agaaatgcct atcaatattt
     1801 ttgataggct ttcttttatt caaaatcaat ataatagcga taatgctttc ctatataaaa
     1861 acattcgctg tattctctaa aatcactttc tttttgtttc gtcatccgca cccttttcaa
     1921 aattggttct tgtttgtcga ttgcgagcgc ttcctgtact tcacgattag gcaacatcgc
     1981 ttcaatatat tccttttctt gattcacgac aataccgaag cctttcaaat attcataaaa
     2041 agaaccgtaa taatcttctg ctttaagtga gtaatcttga ttataaggaa taaaactgat
     2101 aaataaagca aatgccaagt ctttcgtacc gcgtaaccgc ttaatttgta gcaccttgtc
     2161 cccgacagaa agccctagct gtaacgctat ttttttatcg gcattgatta cttctacttc
     2221 tgcatgtagc gtagccgcct ttttaccaag ttctttcatc tcattcgtaa aactgcgcac
     2281 taacgtaaaa tgctcatcct ctgcttcttc ccagtcacgt acaaaagtac ctttcgcgcg
     2341 ctctctataa agtaaattct cacgaacgag ttcatcaatt gcttttcgaa cggtaattct
     2401 actgacattg tataactcac ataaatcaag ctctggtgga attttatctc cagtttgcca
     2461 aacttccgat tggattttat ctcgtaaatc atcagctatt tgcgcataga gcggagatgc
     2521 atcgtacatt ttatttaact ttctcaccat agtaagcctt ccttctcaaa ttgtattatt
     2581 gtcatcacaa taaatcatag cataagctta tccaaaattc caatataaaa agtagagcta
     2641 ttaagcccta ctttttaaac tattctactg caactcaatc gttaaatcac ctgttttgag
     2701 gcgttccttt ttaataagaa acggtctgac aataagtgca ataacacctg gcaagacaac
     2761 tgctaccaaa ataaaagcag caagtgtgct gaatccgtaa tttgctatta aataaagagg
     2821 tgcaacaaaa gcacataacc cgagaccagc gacttcactc gcagcttgga tatggaacac
     2881 catcacgcca agaggtccag caatcagtgt tgttagtagt ggtactatca taaggctggg
     2941 ttttctaatg atgttaggtg tttgtaattt aggtgtacag ataagttggg caaaaaatgc
     3001 accccagtta ttatcccgat aacttaacac cgcgaatgac acgaattgaa ccgagcaacc
     3061 aatcaacgcc gcagcacttg ctgttggatc aagttgaagc gcaatcgcga gcgcagcaga
     3121 agaagctggg ctaagtatca gtaatccaaa cacaaaagca ataaccatcg atgaaatcag
     3181 cggcgaacca ccaattaatg aactaattcc aagacttaca gaagctaaaa tcggcgccat
     3241 aatctttgca aataaaatac cgcttagtcc gccagctaaa agtgaaacac cgggaatcaa
     3301 aatcatatca aatttcgtct ttccagtgac tcgcttccca gtccaaactg ccacaataac
     3361 agccaaaata gctccgactg gttctccgct agtaatagca actccgccac cagctaacgt
     3421 cgccactgcc ccgccaccaa taacagcaga tgcagccgca cttatcgtca caagcgtatt
     3481 cgcgtgcaag cacatcgcaa taccaacacc aattcccgga attaacatcg ttttaccaat
     3541 tgctccaacc gttacaagaa atgaaatccc tgtcatctgc ccaattgtct gtaaaagaag
     3601 tccaattcca agcgttacaa gaaccgcatt cgcaatcccc atagaagcct tataggaacg
     3661 atctataaaa tattctttca ttgcttctcc ctttctaaaa tgtattcttt ctcattgtaa
     3721 tcactagtta attaaaaagc tagttttatt tactggtttt cctttaaaaa tgttaaaaag
     3781 gtttcagcaa ttcgattttc aagtctttgt ctgtttttta gtaccgaaaa cttccgcatt
     3841 aagctaccag cctcattaaa cgtctgcagt tttcctgatg taatttctgt ttgaacaaca
     3901 cacttagaaa taacggtgta gcccattcct tcaagaacca tttgtttgac cgccatatta
     3961 ctccaagcaa caactttttc agcaacattc cagccattgg tacttaatac atgatccaaa
     4021 tattcacgcg ttcctgagcc ttcttctcgc gcaatccaag ttgctccttg ttcgatttcg
     4081 gtaagtgaac cgtctgctcg accaacgata cacatctcat catccgaaaa agcacttatc
     4141 tccaaatctt tcttacttac ctgaccttca ataagccctg tgtccacttg aagaagttcc
     4201 actttgtcag caattttcgc ggtattttca atgattagtt ctattgtaat atccggataa
     4261 agggcatgaa atttcgcaat cacttctggc aaaaaatact ctcctatcgt aaaactagca
     4321 ccaattcgaa gtcgaccttt taaatgatgg tgatataaac ttatttcatc ttccacttgt
     4381 ttatatagac cttctaattg cttggcacgg tgatataaaa tttctcctgt tgctgttaaa
     4441 ataaactttt tagcctgcct gtaaataagc tctgtttcat aaatctcttc taatttcttt
     4501 aattgcaacg atacagcggg ttgcgaaatg tgtaattctt cagctgcttt tgtaaaactt
     4561 tgcaattcta ctactcggat atatgttctt aatgcctcat ccatagtaac acctccataa
     4621 aaataactta tcaataatat aattaatata aattttacta ataaaatcaa gaatggtaaa
     4681 gtaaaagtat aaaagaaagg gggatgaaca tgagtcaaat tttatttaaa acgaagactt
     4741 tttggtatgg tattgcgctt actttctgta ttgctacctt atcttatttt ttagcgaagt
     4801 tgcctttttt aatgattctc ggacaacttg taactgctat tttaattggt attatcattc
     4861 gtgcactttt cccagttcct gaaaaatggt ttactggtat tcagttttcc aacaaggtaa
     4921 ttcttcgtgc tgggattatt ttacttggtt ttcgcttgaa cttagttgat atttatcatg
     4981 ctggctggcg cgtgtttctc attgctgcct tatgccttag ctttggtatt actattgttt
     5041 atttcttagc caaacttttt ggagtggata aaaaactagc tattttggtc gcttgtggta
     5101 cagggatttg tggtgctgct gcagtagttg cgatttctcc acaagtaaaa gctgataaca
     5161 accaaacggc tgtggctgct acgattattg cactacttgg aactattttc actgttatct
     5221 atacgttgat ttatccaatt ctgccacttg gaccagacgg ttatgggatt tttgcagggg
     5281 ctacacttca tgaaattgcc catgttattg cagctgcaga tccaggcggc tcatcagctg
     5341 ttgatatggc ggttattgtt aaattaacac gtgtagcctt acttgttcca gtctgctttg
     5401 ttgttgcaaa aatggttaat gctggaacta aaaaccgttt ttcatgggct gaacttcctg
     5461 taccttggtt tattttcggc tttttagcaa ctagtgcaat taacagcttt ggaattattc
     5521 caacatctgt aactgatttt cttgtcatct gcgcatattt cctcattgct atgtcaatgg
     5581 gcggactcgg tttaaatgtc cacttgccat cgttcggaaa aatgggtgga aaaccttttg
     5641 ctgcggcgtt aatcggttct gttttccttt ccgcatttgg tctagcttta gtacttttgt
     5701 ttcatttagc aggttaagat gtcctcgtca cctcgatttg tgatacaata gcaaacacga
     5761 ggtgactatt tcatgacgaa agcaatttgg acttgccgag cgttcttact cggatacttt
     5821 cttgtgctgc atttcactgc agatacttac acttttctaa ttttaaatgt cgggcttgct
     5881 tatatacctt tcgaaatagc agtatttctc acaaaaaaac ctcgcgtctg gtggattttt
     5941 tggccactag gtattgtttg gctagtattt ttcccaaatg caccgtatct tttaactgat
     6001 ttacttcatt tacaacgttt agaaatatac ggggcagaag gaatactttc aacagcacct
     6061 tggttatggc gacatttcac ttatattatc gtcggtgtgt tctttggatt atttattgga
     6121 ttctggtctt tcgcaaaaat gcttgcagaa ataagaagac gatttaattg gactagttta
     6181 ctaagttatc aattactttt gataggatta attttgttat ctagttatgc gatatacatt
     6241 ggacggttct ctcgtttaca ctccatccat ttacttacgc agccaattga ctcattgcaa
     6301 attatgttta gtgtttttca ctggccattt tggaattttg tgttttactt ttcgattatc
     6361 caatatgtaa tttatacgct atttagcagg ttttctagct cactaaaaaa ctaaaaacgt
     6421 ttgtatttta ggaaaattaa ttttcttaaa tacaaacgtt tttttaatcg atatgtagct
     6481 tacttcgctc tgttgaaaaa ccttgaggat aacgacgctt taatttctcg atatttaatt
     6541 ctgctactgt ttccatgctt atatctgccc atttagcaat ttgtgatacg taccaaagta
     6601 catcccctag ctcttttgtt agagattcct tatctaaatc atgtccatga aaagcatatt
     6661 tcttaatcaa atcggcaact tcaccggcct ctccagtaat accaagtccg taatttgtta
     6721 gtgcctgttc gtgtgttgca gcagttctat tcgctaaaat ttgatactct ttaaaatcca
     6781 tatgttttcc tccttgcttc tctcactttc ttactataac agataatttt tttcctttgc
     6841 agtcttgact atttccaact tatgcgaact gatgctctat caatgcattt catctttaaa
     6901 aattttttat cttta
//
LOCUS       DABQVC010000149         6907 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.149,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000149 DABQVC010000000
VERSION     DABQVC010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6907
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.149"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..272)
                     /locus_tag="IBJ56_002186"
     CDS             complement(<1..272)
                     /locus_tag="IBJ56_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAM3418433.1"
                     /translation="MDKEIKYAFVTGASGEIGQAICLSLAKAGWNLYLHYYQNKQAVE
                     KLLPQLLAEDVDVILIQADFDDLTSLTEMEKQVFQLDAFIHAAGHA"
     gene            complement(364..1650)
                     /locus_tag="IBJ56_002187"
     CDS             complement(364..1650)
                     /locus_tag="IBJ56_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HAM3418434.1"
                     /translation="MEKITFEQVKEAVFHEKMANGLQVYLLPKQGFSKTYAVFTTNYG
                     AIDNNFVPIGETEFTKVPDGIAHFLEHKMFEKEDGDVFFKFGEKGAFTNAFTSFTKTA
                     YLFSSTSRVEENLETLIDFVQEPYFTEETVEKEKGIIGQEIRMYDDDPDFRAYFGVIE
                     NMYHNHPVKIDIAGTVESIAEINKDLLYLCYNTFYHPSNMVLFVVGNLEPEQMMDLIR
                     ANQAKKEFAEAAPIKRHFPEEPKTVAVKERKIHFPVQIAKNLVGIKEDIGSLEGQAAL
                     KQEIIGDVALEMLFGTTSDTYLKLYNEGIIDDTFGYDYTLQDSFSFVLVGGDAKDPDK
                     QTEKIKEAMKEAAKNGLNESDLALVKRKRIGQFLRSLNSPEFIANQFSQYVMKSASLF
                     DILPLMEEVTLEEVNAFVKNLDQEDRTTSFQLLPEQ"
     gene            complement(1631..2923)
                     /locus_tag="IBJ56_002188"
     CDS             complement(1631..2923)
                     /locus_tag="IBJ56_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HAM3418435.1"
                     /translation="MTDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKR
                     ALLSILLETNSEKYPTQTAFRKQLANLYGANFYTTTAKKGNEHVLTVIFDMIDGQYVS
                     DGIHILEDAFAFIEQALFHPNVTNGAFNDETLAREKENLKSSLEGIYDDKIRFASKRL
                     VEEMFRDDEFRFGSAGVLEDIDAITAKDLYEYYLQFIAEDAIEIFICGDVTKEEVFPL
                     IEKMAFAPRAERKGVFYTKEAPKVVRTIHEQQAINQGKLVLGYQTETLFGDDDFVALQ
                     LANGLLGGFANSKIFINVREKASLAYYASSRIDSFKGYMIISAGIDEVNYEQALKIIE
                     EQVVAMKQGNFTEDELNQTKEMLINQLLETNDQAQGLIELVYNNVLRKANLDLENWIA
                     KIKQATKEEVVAAINKIKPDTIYFLSKGGEELHGKNHI"
     gene            complement(3040..3990)
                     /locus_tag="IBJ56_002189"
     CDS             complement(3040..3990)
                     /locus_tag="IBJ56_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418436.1"
                     /translation="MTAILATIVSSTLLMAGPLIFTALGGVYSERGGVVNIGLEGMMV
                     MGAFSAIVFNLTFQDTFGNLTPWISLIAAMVVGGLFSLVHAVATINFRADHVISGVAI
                     NFLATGLSLFLVKVIYDKGQTDQIKYYFGKPDIPVLSDIPVIGDIFFKNIPVMSYVAI
                     LFAIASWFIIYKTRFGLRLRSVGEHPLAADTMGIKVRWMRYQGVIISGILGGLGGAVY
                     AQSFTLDFGHATISGQGYMALAAMIFGKWNPLGAMGAAIFFGFAQCLAITGGSLPFFK
                     DIPDVYLQIAPYVLTILALVGFIGKSEAPKADGVNYIKGK"
     gene            complement(3987..5039)
                     /locus_tag="IBJ56_002190"
     CDS             complement(3987..5039)
                     /locus_tag="IBJ56_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418437.1"
                     /translation="MSKRLQALVIPVTAVILGLICGAIIMLIFGYDPIAGYSALIQGV
                     IGENFYIGETIRQATPYILVGLSVAVAFKAGLFNIGAEGQMLMGWLGSIIIAVNFDGL
                     TKWIHLPLAIITGMVFGALWAFIPGILKATLRVNEVIVTIMLNYTALYIFNYVVQNLL
                     TDGLDKTQEIHASASLQSELLQSLTDYSSLHWGILIALGFALIIWLMLNKTTFGYEIE
                     AVGFNENASQYAGMSVKKTIIFSMVIAGALAGLGGVMEGLGTYGTAYVLTSSPGIGFD
                     GIAVALLGGSSPIGIVFSAILFGALKVGALNMPAVAGVPNELVNVIIALIIFFVASSY
                     IIRWAMAKFKKGAKAE"
     gene            complement(5032..6573)
                     /locus_tag="IBJ56_002191"
     CDS             complement(5032..6573)
                     /locus_tag="IBJ56_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418438.1"
                     /translation="MDFVIEMLGIRKEFSGFVANDNITLQLKQGEIHALLGENGAGKS
                     TLMNVLFGLYEPDGGEIRVRGTKENINSPNKANELGIGMVHQHFMLVDKFTVAENIIL
                     GKEPSKLGVIEKKKAIEEIKEISDRYGLRVDPNAVVRDISIGMQQRVEILKTLYRGAD
                     ILIFDEPTAVLTPQEIKELIQIMRSLIKEGKSIILITHKLKEIMDVCDRVTVIRRGKG
                     MGTVNVPETTPQDLANLMVGREVVFTTEKIDAKPGKDVLEVKDLVVKESRGVESVRGL
                     NLTVRAGEIVGIAGVDGNGQSELISAIAGLSKVTSGSILLNGEHIENKKPRKITEAGL
                     GHIPEDRHKHGLVLEMSLGENIALQTYYKKPISSKGFLNHKAMYDFARELIEEYDVRA
                     SSEYVAAKSLSGGNQQKAIIAREIHRNPDFLIAAQPTRGLDVGAIEFIHRRLIEQRDN
                     GKAVLLMSFELDEIMNVSDRIAVIYEGKIVAIVDPKETTEQELGLMMAGSSKQEAEMG
                     EKEHV"
BASE COUNT         2060 a         1438 c         1162 g         2247 t
ORIGIN      
        1 tgggcgtgcc ctgctgcatg aataaaggca tctaactgaa aaacttgctt ctccatctct
       61 gttaaacttg ttaaatcatc aaaatcagct tgaatcagta taacatctac atcttctgct
      121 agtaattgtg gcagtaattt ttccactgct tgtttatttt gataatagtg aagatacaag
      181 ttccaaccag ctttcgcaag tgacaaacaa attgcttgac ctatttcccc gctagcccct
      241 gttacaaaag catattttat ctctttatcc aaaaaaaggc aaccctttcc agtctatttc
      301 ttttatgata gcatgactca gcaatttatg ctattttttc tactaaaaaa agacataatt
      361 tgtttattgt tctggaagta attggaaact tgttgttcga tcttcttgat ccaaattttt
      421 aacaaatgca tttacttctt ctagggtaac ttcctccatt aaaggtaaaa tatcgaataa
      481 agaagctgat ttcataacgt attggctaaa ttggttcgca ataaactccg gagaattcag
      541 cgaacgcaaa aattgaccaa ttcgtttgcg ttttactaat gctaaatcag attcatttaa
      601 gccgtttttg gcagcttctt tcattgcttc tttgattttt tcggtttgtt tatctggatc
      661 tttggcatct ccaccaacta atacgaacga gaagctatct tgtaaggtgt aatcatagcc
      721 aaatgtgtcg tcaatgattc cttcgttgta taacttcaag taagtgtcag aggttgtgcc
      781 aaagagcatt tccaaggcta catctccaat aatttcttgt tttaaagcag cttggccttc
      841 taaagagcca atatcttctt taatccctac aaggttctta gcaatttgaa cagggaaatg
      901 aattttacgc tctttcactg caactgtttt tggttcttca gggaaatgac gtttgatcgg
      961 tgcagcttca gcgaattctt ttttcgcttg attggcgcga atcaggtcca tcatttgttc
     1021 tggttctaaa ttccctacaa caaaaaggac catgttgcta gggtgataga atgtgttata
     1081 gcaaagatac agtaaatctt tgttaatttc ggcaatcgat tcaacggttc cagcaatatc
     1141 gatttttact ggatgattat gatacatatt ttcgattacg ccaaaataag cgcgaaaatc
     1201 aggatcatca tcatacattc tgatttcttg gccgataata cctttctctt tttcaacagt
     1261 ttcttctgtg aaatacggct cttgtacaaa gtcaatcagc gtttccaagt tttcttccac
     1321 tcgagaagta ctcgagaaaa gataagctgt ttttgtgaaa gaggtaaatg cattcgtaaa
     1381 cgcgcctttt tcgccaaatt tgaagaatac atcgccgtct tctttttcaa acattttatg
     1441 ttctaagaaa tgggcaatac catctggtac tttcgtgaac tctgtttcac caattgggac
     1501 gaagttatta tcgattgcac cgtaatttgt tgtgaataca gcataagtct tactaaaacc
     1561 ttgttttgga agaagataca cttgtaagcc atttgccatt ttttcatgaa agactgcttc
     1621 ttttacttgc tcaaatgtga ttttttccat gaagttcttc tcctccctta cttaagaaat
     1681 aaatggtatc tggtttaatt ttattgatag cagcaactac ttcttctttg gttgcttgtt
     1741 tgattttcgc aatccaattt tctaagtcta agtttgcttt acgtagaaca ttattgtaaa
     1801 ccagttctat caaaccttgc gcctgatcat ttgtttcaag caattggtta atgagcattt
     1861 cttttgtttg gtttaattca tcttctgtaa aattgccttg tttcattgct actacttgtt
     1921 cttcaataat ttttaaggct tgttcgtaat ttacttcatc aattccagct gaaataatca
     1981 tataaccttt gaaagaatca attcggcttg aagcataata agccagactc gctttttcgc
     2041 gaacgttgat aaagattttc gaattagcaa atccgccaag aagcccattt gcaagttgaa
     2101 gtgcaacgaa atcatcatct ccaaataagg tttctgtttg ataaccaagt acaagtttcc
     2161 cttgattaat cgcttgttgc tcatgaatag tacgcactac ttttggagct tcttttgtat
     2221 aaaaaacacc ttttcgttca gcacgtggcg caaaagccat tttttcgata agaggaaata
     2281 cttcttcttt tgttacatct ccacaaataa atatttcgat agcatcttct gcaataaatt
     2341 gtaagtagta ttcatataaa tctttcgctg tgatagcatc aatgtcttct aaaacgccag
     2401 ctgagccaaa acgaaactca tcatcgcgga acatttcttc tactagtcgt ttagaagcaa
     2461 aacgaatttt gtcatcgtaa ataccttcta aactactttt caagttctct ttttcgcgag
     2521 caagtgtttc atcattgaaa gcgccgtttg tcacatttgg atggaataat gcttgttcta
     2581 taaaagcaaa agcatcttcc aaaatatgaa ttccgtccga tacatattgc ccatcaatca
     2641 tatcgaaaat aacagttaat acgtgttcat tacctttttt agctgttgtt gtataaaaat
     2701 tagcaccgta aagattcgct aattgctttc tgaaagctgt ttgagttggg tatttttcac
     2761 tatttgtttc taataatatt gaaagtaaag cccgtttagt tactgtttct ctttctaatg
     2821 gagcgcgaaa tttgaaaaca attttattgg atttatattt ttgggttgga acaattgtta
     2881 gtgcaaccgg accaactttt tcttgaaata ttttgtctgt cattataatg ctcctttcaa
     2941 gcaatgatct cactttccta ttgtatccta agttgttgcc acgcacaatt ttctagcata
     3001 aaaaacagcc tagaatttaa tctaggctgt ttactcgtat tatttacctt taatgtagtt
     3061 cacaccatct gcttttggtg cttcggattt accgataaag ccaacaagcg ctaagatagt
     3121 taatacataa ggcgcaattt gtaagtaaac gtctggaatg tctttgaaga atggtagcga
     3181 tccgccggta attgccaaac attgcgcaaa tccgaagaaa atagctgccc ccattgctcc
     3241 aagtgggttc catttaccaa aaatcatcgc tgcaagggcc atataacctt gaccggaaat
     3301 agttgcgtgt ccgaaatcaa gtgtaaagga ttgggcgtaa accgcgccac ctagaccgcc
     3361 aaggatacca gaaatgataa ccccttggta tctcatccag cgaactttga ttcccatcgt
     3421 atctgctgca agaggatgtt cccctacaga acgaagacga agaccaaaac gcgttttata
     3481 aataataaac caagatgcga ttgcaaatag aatcgccaca taactcatta ccggaatgtt
     3541 tttgaagaaa atatcaccaa taactggaat atcacttaaa acaggaatat ccggtttacc
     3601 aaagtagtac ttaatttgat ctgtttggcc tttatcataa attactttta caaggaataa
     3661 agatagaccg gttgctaaaa agttaatcgc tacaccactg attacgtggt cagcgcggaa
     3721 gttaatagtt gcaacagcat gtacaagaga gaataatccc ccaacgacca tcgccgcaat
     3781 aagtgaaatc caaggagtta aattgccgaa agtgtcttgg aaagtaaggt taaagacgat
     3841 agcagagaat gctcccataa ccatcatacc ttctagtcca atattaacca caccgcctcg
     3901 ttctgaataa acgcccccga gagcagtaaa aattagtggg cctgccataa gcagtgtact
     3961 agaaacaatt gtcgctaaaa tggctgtcat tctgctttcg cccccttctt aaattttgcc
     4021 atcgcccagc ggataatgta gctggatgcc acaaagaaga taatcagagc gataattacg
     4081 ttgactaatt cgtttggaac gcctgcaact gctggcatgt ttagtgctcc tacttttaga
     4141 gcgccgaaca agatggcaga gaagacaatc ccaattggag aacttcctcc gagtaatgca
     4201 acggcgatac cgtcaaaacc aatccctgga gaagaagtta aaacataagc cgttccgtat
     4261 gttccaagac cttccattac gccaccaaga ccagcaagcg ctccggcaat aaccatggaa
     4321 aagataattg ttttctttac actcataccg gcatattgcg atgcattttc gttaaatcca
     4381 actgcttcga tttcgtaacc aaaagtagtt ttgtttaaca ttaaccaaat aataagtgca
     4441 aaacctaggg ctattaaaat cccccaatgt agagacgaat aatctgtaag tgattgtaat
     4501 aattcagatt gtaaggaagc ggacgcatga atttcttgcg ttttgtccaa accatctgta
     4561 agtaaatttt gtacgacata gttgaaaata taaagtgccg tgtaattaag catgattgtt
     4621 acgataactt cattcacacg taaagttgct tttaatatac ctgggatgaa tgcccaaagt
     4681 gcaccaaaaa ccataccagt aataatcgca agtggtaaat gaatccattt agttaaaccg
     4741 tcaaagttta cagcgatgat aatggaacct aaccatccca tcagcatttg accttccgca
     4801 ccaatattga aaagtccggc tttaaatgca actgcaacag atagaccaac taaaatgtac
     4861 ggtgtagctt ggcggattgt ttcaccaata tagaaatttt ctccgataac accttgaatc
     4921 agagccgaat aaccagcaat tgggtcatat ccaaaaataa gcatgataat cgcaccgcag
     4981 ataagtccaa ggataacggc tgtaactggg ataactaatg cttgtagtcg tttagacatg
     5041 ctctttctcc cccatttccg cttcctgttt ggatgaacca gccatcatca gaccaagttc
     5101 ttgctccgtt gtttctttcg gatcaacaat agcaacgatt ttcccttcgt atataaccgc
     5161 aatacggtca cttacattca tgatttcatc taattcgaac gacataagta aaacagcttt
     5221 tccattatct cgttgttcaa tcaagcgtct atgaatgaat tcaattgctc caacatctag
     5281 tccacgtgtt ggctgagccg caattaagaa atctggatta cggtgtatct cccttgcaat
     5341 aattgctttt tgttggttac caccagaaag cgattttgct gctacgtatt cgctacttgc
     5401 acgaacatcg tattcttcaa ttaactcacg cgcaaagtcg tacattgctt tatgatttaa
     5461 gaagcctttg ctagaaatag gttttttata atatgtttgt aaagcaatat tttctcctag
     5521 agacatttcg agtactaaac catgtttatg acggtcttct ggaatatgtc ctaaaccagc
     5581 ttccgtaatt ttacgaggtt ttttgttttc gatatgctcg ccattaagaa gaatactacc
     5641 actagttact ttagaaagac ctgcaatcgc tgaaataagt tcactctgac cattaccatc
     5701 gactccagct attccgacga tttcgccagc tctgacagtc aaattaagtc cacgaacact
     5761 ttcaactccg cggctttctt tcacaactaa atcttttact tctaaaacat ctttgccagg
     5821 tttggcatct attttctctg ttgtaaagac cacttcacga ccaaccatta aattagccaa
     5881 atcttgtggt gttgtttccg gaacattaac agtacccata cctttaccac ggcgaataac
     5941 agttacacgg tcacaaacat ccatgatttc ttttagttta tgtgtgatta aaatgatgga
     6001 tttgccttct ttaataaggg aacgcataat ttggattaat tctttgattt cttggggtgt
     6061 caaaacagct gttggttcat caaaaatcaa gatatctgca ccacggtaaa gcgtttttag
     6121 aatttccaca cgttgttgca taccgattga aatatctcgt acaactgcat ttggatcaac
     6181 gcgtaagccg taacgatcag aaatttcttt aatttcttca atcgcttttt tcttttcgat
     6241 aacaccgagt ttgcttggct ctttaccaag gatgatgttt tctgcaaccg tgaatttatc
     6301 cactaacatg aaatgttgat ggaccattcc gattccaagc tcatttgctt tgttcgggct
     6361 attgatattt tctttcgtac cacgaacacg aatttcgcca ccatctggtt catataaacc
     6421 aaacaagaca ttcattagcg tagatttacc tgcgccattc tcacctaaca aagcatgaat
     6481 ttctccctgc tttaactgta aggtaatgtt atcatttgct acaaatccag agaattcctt
     6541 cctgattcct aacatttcaa taacaaagtc cacttcttca ctccccttgt cgtctggttc
     6601 aaactggaaa aacagccaca cgcgcgattc tctcgaagga cgccgcctct ccccgtactt
     6661 cctcccgaag aaggttccga gttttttatc cgtttgttgt tcaatgactt ttcagcttaa
     6721 atactttggt atgttgtaaa atgcgattta taataccatc tatgtacgaa agtttacctt
     6781 gcatttttaa gctattaaaa aagccatctc cttattttat ttctaaatgg cattcattgc
     6841 aatcataaat tccaatatac cgattatttt cttttagtaa aagggtttac ctatcaaatt
     6901 aaaacgc
//
LOCUS       DABQVC010000150         6897 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.150,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000150 DABQVC010000000
VERSION     DABQVC010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6897
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.150"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            4..150
                     /locus_tag="IBJ56_002192"
     CDS             4..150
                     /locus_tag="IBJ56_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418439.1"
                     /translation="MDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKAVSNKAMPNMT
                     LRLQ"
     gene            369..1127
                     /locus_tag="IBJ56_002193"
     CDS             369..1127
                     /locus_tag="IBJ56_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418440.1"
                     /translation="MKKEAVNQQSIYVHIDHVINNVATSGISFCDFLNGVGQPPENIL
                     LIKHNIEDASYNAHTAFHYLEPGDLANISKENFNPLCWIDFEDVELLNQLTPQEVAEM
                     LYLAHTGRHLRSPFYYKLQNNFVYLTREDGRYNKVYYRNLNHFYMLLSYVIARKTAEL
                     VNEKGIFSFGKKKYVAEPPVELLKKMADHFKDGACIALDDVVRTRTQIEVPIGHGLTE
                     EMTELEISSKIYYEEEVAKLVYDLKQNEWKYIEK"
     gene            1207..1761
                     /locus_tag="IBJ56_002194"
     CDS             1207..1761
                     /locus_tag="IBJ56_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3418441.1"
                     /translation="MTKKLIKEVALTLFAEKGYDGTVLSEIAKAVGIKTPSLYAHFAS
                     KEALFLEVYQDSIQMELTELGKVAERDDLVGEKKLQSIFFVATDFSSNPDEKKFFQRA
                     VFYPPKSLFQELKEETKTYEQLTNRILRETLEKIVSEEALVRWMHVFYALLDGLSVEH
                     GIYDETEFELRRKSAWAVLASLLK"
     gene            1778..2119
                     /locus_tag="IBJ56_002195"
     CDS             1778..2119
                     /locus_tag="IBJ56_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HAM3418442.1"
                     /translation="MAWFYLIMAGLSEIVWAFGLKESHGFTMLGWSLLTIAFLIVSFG
                     LFSISMKSIPIGTAYAVFTGIGAAGTAIIGMIFLSEGVSFWKIVSLIVLLTGIIGLKL
                     VDGNESEKEAK"
     gene            2122..2442
                     /locus_tag="IBJ56_002196"
     CDS             2122..2442
                     /locus_tag="IBJ56_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HAM3418443.1"
                     /translation="MDWIFLLVAGLCEMVFVVMLKLSDGFKKVGYAILTIIFMSASFF
                     LLSLALKTIPIGTGYAIWTGIGAVGSVTLGMIVFKERKSVGKLLFITMIIAGVVGLKL
                     TSGV"
     gene            2592..3704
                     /locus_tag="IBJ56_002197"
     CDS             2592..3704
                     /locus_tag="IBJ56_002197"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HAM3418444.1"
                     /translation="MKTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITN
                     EGEWIQGPLLSGKLDFVEQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVF
                     PLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAV
                     RLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKELADAMTEAFLYDR
                     RVVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPT
                     EVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPL
                     LWQETGLPYGALIERLVDLAKERHAAKNALKYKLED"
     gene            3768..5141
                     /locus_tag="IBJ56_002198"
     CDS             3768..5141
                     /locus_tag="IBJ56_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HAM3418445.1"
                     /translation="MKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVP
                     FVGNVRDGHEFVSQAREMGAVATFWQKDVPNPPKDFPVILVEDTLLALQELAAKYIQQ
                     VKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVA
                     VLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSG
                     ILIYPHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV
                     PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAY
                     NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIF
                     LYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDV
                     VENLIIK"
     gene            5208..5921
                     /locus_tag="IBJ56_002199"
     CDS             5208..5921
                     /locus_tag="IBJ56_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAM3418446.1"
                     /translation="MVACLCIHGFTGSPSEVKPLADYLREHTDWDVLAPTLPGHDHLR
                     HLKNVTYKDWIVFVDSILSQMLKEDDEVYIIGFSMGGLLAGWLARHYPEVKKLVLLST
                     AVNAMEWPQLVENSKQVLMEAKEVTLKNSPMFKRYQKKVTETPWTSTLQFKKMVALAK
                     PVFEHIEIPTFIAQGSADQVVPAEKSVNFLMESIPGPKELFILEGSKHVICQDEQADK
                     LFAAVLTFLQKDVAVLNAQ"
     gene            complement(5933..>6897)
                     /locus_tag="IBJ56_002200"
     CDS             complement(5933..>6897)
                     /locus_tag="IBJ56_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HAM3418447.1"
                     /translation="QALGNKNGVSEQTKLAVFKMADELGYKYKREIAREVVKEKFALL
                     ATSFALSQRSFFGEIIDNMKQSIIAHQAELIIFPVTDEEASTNQLPEQLTSENWTGIF
                     LLSHINTDYSKKVIDLGMPVVLIDHHDPHLKADAVISQNKDGAFMAVEFLIQNKHQKI
                     GFLGDVTFSPSYEERLEGYKKALHYYHIPFNEKYAITRIKEEQTTLYRTLDELDELPT
                     AWFCVNSGLGFILNTYLQSKGYNIPNDLSIICFDNTEFTVLSNPQLTTMCTNLSYMGE
                     KAVELMYNRIRKPDEGFVHLALATNLIARDSVGENKKADSASES"
BASE COUNT         2196 a         1108 c         1505 g         2088 t
ORIGIN      
        1 agtttggata ataatcaaaa agacttgaat caagtaattc gtcagctcaa agaaaaagga
       61 atagtagttg aaaaaacaaa atcacgaaaa gatatttgga aagcggttag taataaagcg
      121 atgccgaata tgacacttcg attgcagtaa atcgaaaagt ggagttttta tgtgatattt
      181 tgtgaggctt tgaagtaaaa tgactcaaag cagcatgatt tacatataaa ataacttcac
      241 ttttttcttt gtcataaatt agtcattaag ttttgatgtt tctgttatcc tttttacgca
      301 aaaatgttgt atgatggaat ggaaggcttt tgtcatagaa gaaaatagaa atagagtgag
      361 gcatatacat gaaaaaagaa gcggttaacc aacaatctat ttatgtgcat attgatcatg
      421 ttattaataa tgtggcgaca agcggcattt ctttttgtga tttcttaaat ggcgtgggac
      481 agccccctga aaatattttg ttaattaagc ataatattga agacgcatcc tacaatgcac
      541 acacagcttt tcactactta gagccaggcg atttagcaaa tatttccaaa gagaatttta
      601 atccactgtg ttggattgat tttgaagatg tagaactttt gaaccaacta accccacaag
      661 aagtagcgga aatgctttat cttgcacata ctgggcgtca tttgcgctca ccattttatt
      721 ataaattaca aaataatttt gtttacttaa ctagggaaga cggtcgttac aataaagtat
      781 attatcggaa tcttaatcat ttttatatgt tactaagtta cgtcattgca cgtaaaacgg
      841 cagaactagt taatgagaag ggtatttttt cgtttggtaa gaaaaaatat gttgcggagc
      901 cgccagttga acttttgaaa aaaatggcag atcattttaa agacggtgct tgtattgcgc
      961 tcgatgatgt cgtgagaacg cgcacacaaa tcgaagtacc aattgggcat ggactcacag
     1021 aagaaatgac agaactagaa atctcttcta agatttatta tgaagaagaa gttgcaaaat
     1081 tagtgtatga tttaaaacaa aatgaatgga aatatatcga aaaataaaaa atcaaacttt
     1141 ttcctttacg tttggttttt tatttgttaa aatttaacta atgaacgtta gttaggaggg
     1201 tgctttatga cgaaaaagct aatcaaagaa gtcgcattaa ctctttttgc agaaaaaggc
     1261 tatgatggaa cagtgctttc ggaaatcgcg aaagctgttg gaattaaaac accatcgtta
     1321 tatgcccatt ttgcatcaaa agaagcccta tttttagaag tttatcaaga tagtattcag
     1381 atggaattaa cagaactagg gaaagtagca gagcgagatg atttggttgg ggaaaagaag
     1441 ctacaatcta ttttctttgt agcgacagat ttttctagca atcctgatga aaagaaattt
     1501 ttccagcgtg ccgtctttta tccacctaag tcgctttttc aagaattaaa ggaagaaaca
     1561 aagacatatg aacaactgac gaatcggata ttacgcgaaa cgttagaaaa aatagtatcc
     1621 gaagaagcac ttgtaagatg gatgcacgtt ttttatgcac ttcttgatgg actgagtgtg
     1681 gaacacggca tttatgatga aacggaattt gagttgcgaa gaaaatctgc ttgggcagtt
     1741 ctcgcaagtt tactcaaatg aattggaggt aaggaaattg gcttggtttt atttaattat
     1801 ggcaggatta tcagaaattg tttgggcttt tggactaaaa gaatcgcatg gtttcacgat
     1861 gttagggtgg agccttttga cgatagcatt tttgatagtt agttttggtt tgttttcgat
     1921 ttccatgaag tccattccaa ttgggacggc gtatgcggtt tttactggaa ttggggctgc
     1981 tgggacagcg attattggga tgattttcct ttcagaaggt gtttcttttt ggaagatcgt
     2041 ttcgcttatc gtattattaa cagggattat tggtttgaaa ttagtggacg gcaatgagtc
     2101 tgaaaaggag gctaaataac gatggattgg atatttttac tcgtagcagg tttatgcgaa
     2161 atggtcttcg ttgtcatgct aaaattatca gatggcttta aaaaggttgg atatgcgata
     2221 ctgacgatta tttttatgtc tgcaagtttc tttttactat ccctcgcgct taagacgatt
     2281 ccaatcggta caggttatgc gatttggacc ggaattggtg ccgttggtag tgtgacactt
     2341 ggaatgattg tttttaaaga acgtaaaagt gtcggcaaat tgctctttat tacgatgatt
     2401 attgccggcg tggtcggttt gaaattaaca tctggtgttt aatattttag gttgaaaaag
     2461 tcctttttgg aataagcgtg cacggttctt atttaaaaaa gaagattttt tcaacctatt
     2521 ttttagttat accttttcat cctgtcaaaa catggtaaaa tagataaagc gaataatgac
     2581 ggaggggtat tatgaaaacc aaattaattt tgttatacgg tgggaaatct gctgaacacg
     2641 aagtttcctt acaaacagca ttttcagtta tcaatgcttt ggatttagaa aaattcgaag
     2701 ctgcgccaat atatattacg aatgaaggtg agtggattca aggaccactt ctttctggga
     2761 agttagattt tgttgaacaa ttacgttttt cggctacaga tacaataaaa cttgcaacaa
     2821 ctgaatcaga aaaatcagaa ggggaagcga ttagcccggc cgttttagaa gcagacggac
     2881 aagagacagt cgtattcccg cttttacatg gtccaaacgg agaagatggc actgttcaag
     2941 gattgttcga agtattaaac attccatatg ttggtaacgg ggtcttggca tcttctgctg
     3001 caatggacaa aatcgtgatg aagaaaatct ttgcagatgc tggaatcccg caagttccag
     3061 cagttgctgt tcgattaatt gattggaaga actatcaagc ggaaatggtt gcggagatgg
     3121 aagaagtact tacctatcca gttttcgtaa aaccagcaaa ccttggttcg agtgttggta
     3181 ttagtaaggc aacgaacaaa aaagaattag cggacgcaat gacagaagca tttttatatg
     3241 accgtcgtgt ggttgttgaa caaggtgttg ttgcgcgcga aatcgaaatg ggcgtacttg
     3301 gaaatgatac gccagtttgc tctgttccgg gtgaaatttt gccagaaggt gcagttgcta
     3361 cgttttacga ttacaaagca aaataccagg ataataatac tgcgttaatt attccgactg
     3421 aagtagatcc ggaaatcttg gaacaaatga aagaatatgc ggttcaagca ttcctagggc
     3481 ttgatgcaag cggactagtg cgagcggact ttttcttaac ggaagataat cagttattct
     3541 taaatgaagt gaatacaatg cctggtttca caccgtacag catgtatcct cttctttggc
     3601 aggaaacggg cttaccttac ggagcgttaa ttgaacgatt agtcgattta gcgaaagaac
     3661 gccacgcagc caaaaatgca cttaaatata aattagaaga ctaaaataaa caagaaagca
     3721 gttttcatat gcggaagctg cttttttatg gaagagagcg atttaatttg aaaaaaacag
     3781 taggcgaagt agtagcaatg ttagatagtt ccatccatgt agatgcattt cgcgatgtcg
     3841 tcattactgg cgtttgtttt gatacaaggc aaataaagtc aggggattta tttgttccat
     3901 ttgttgggaa tgtacgcgat ggacatgaat ttgtgagtca agcgcgagaa atgggtgcag
     3961 tggctacttt ctggcaaaaa gatgtaccca atccaccgaa ggatttcccg gttattttag
     4021 tagaagatac tttgctcgca cttcaagaat tagcggcgaa atatatccaa caagtaaagc
     4081 caaaagttat tgcgattacc ggaagcaatg gtaaaacgac gacaaaagat attatggctg
     4141 cgattgtaga aacgacgtat aaagttcatt atactggcgg gaattttaat aatcatatcg
     4201 gcttaccgta caccatttta acgatgccag aagataccga agttgctgta cttgaaatgg
     4261 gcatgaatca tcgtcatgaa atcgaagtgc tttccaaaat tgccaaaccc gatatcgcga
     4321 ttattacgaa tatcggcgag gcgcatattg aatatcttgg ttcgcgtgaa gaaattgcca
     4381 aagcaaaact ggaaattact gccgggctta atccaagcgg gattttaatt tatccgcacg
     4441 aagaaacttt gctgctagga aatattaatg gcgatttcag acagctcact tttggtaagt
     4501 cggaagctgc ggaaatttat ccgttagaaa ttcgtgcgga agcggaaggc acttctttta
     4561 taactaattg ggagccggag ctagaaattt ttgtccctat tattggtgaa cataatgttt
     4621 tcaatacaat ggcggcgatg cttgcggcaa gagaaattgg aattgaaggt gaaaaaattc
     4681 aatctgcgct gaaaaatatg gaacgttcta aaagtcgttt agaatggatt acaacgaaaa
     4741 gtggcgcgcg tattttgaat gacgcttata actctagtcc aacagcatta aaaacggttt
     4801 taaaaacatt tatgcatatg gattcgagcg gcaaacctaa atatttggtc cttgctgata
     4861 tgttggaact tggagatttg tcgacaaagt tacatcaaga atcagccgaa gtattagaaa
     4921 agggtatgat tgagaagatt ttcttgtatg gtgaggcgat gaaagctttt ggtgacatag
     4981 cggaagccaa aattggtcag ggaaaagttc atcattttaa cacgaaagaa tcgcttgaga
     5041 cggcgcttct ttcagaaatg aatggaaatg aatggatact ggtcaaaggt tcttacggaa
     5101 tgggcttgaa agatgtggta gaaaatctta ttattaagta acgactaaaa ttggacagaa
     5161 catattaccg cttaattggt aataatttgg acaggaggaa aggcataatg gttgcttgtt
     5221 tgtgtattca tggttttact ggttcgccgt ccgaggtgaa gccactcgct gactatttgc
     5281 gagagcatac agattgggat gttttagcac ccacattacc tggccatgat cacctgcgcc
     5341 acttaaaaaa tgtgacgtat aaagattgga ttgtttttgt agatagtatt ttaagccaaa
     5401 tgctaaaaga agacgatgaa gtatatatta ttggtttttc catgggtgga ctgctcgctg
     5461 gatggctcgc gagacattat ccggaagtaa aaaaactagt acttctgagc acagccgtaa
     5521 atgcaatgga atggccgcaa cttgtcgaaa attccaagca agtattaatg gaagcaaaag
     5581 aagtaacgct caaaaacagc ccgatgttca aacgttatca aaagaaagta acggaaacgc
     5641 cttggacttc cacgctacaa ttcaaaaaaa tggtagcttt agcaaagccg gtttttgagc
     5701 atattgaaat tccaactttt attgcacaag gcagtgccga ccaagtagtt cctgctgaaa
     5761 aaagtgttaa tttcttaatg gaaagtattc ctggtccaaa agaattattt atattagaag
     5821 gttcgaaaca cgtgatttgt caggacgaac aagcggacaa attatttgca gctgttttaa
     5881 catttttgca aaaagatgtc gctgttttaa atgctcaata aagaaaaccg attcagcttt
     5941 cactcgctga atcggctttt ttgttttcac caacagaatc tcgggctatt aaattagtag
     6001 caagcgccag atgaacaaac ccttcatctg gttttcttat gcgattatac atgagttcga
     6061 cagccttctc acccatatag cttaggttgg tacacattgt agttagctgt ggattgctta
     6121 gtacagtaaa ctcggtatta tcaaagcaaa taatcgataa gtcattaggg atattatagc
     6181 cttttgattg caagtaagta ttgagaataa acccaagtcc tgagttgaca caaaaccaag
     6241 cagtagggag ttcgtccagt tcatctaaag ttctatataa tgtcgtttgt tcttctttga
     6301 tacgagtgat ggcgtatttt tcgttaaaag gaatgtgata gtagtgcaaa gcttttttgt
     6361 atccttctag ccgctcttca taacttggag agaaagtaac atcaccgaga aaaccgattt
     6421 tctgatgctt attttgaatt aaaaattcta cagccataaa agcgccatct ttattttgac
     6481 tgataaccgc gtcggctttt agatgcggat catgatgatc tataagcaca acgggcatgc
     6541 cgagatcgat aactttttta ctataatccg tgtttatatg cgaaagtaag aaaatcccag
     6601 tccagttctc gcttgtgagc tgctctggta attgattagt agacgcttcc tcatccgtaa
     6661 ctggaaaaat aataagttcg gcttggtgag cgataatgct ttgtttcata ttatcgataa
     6721 tttcgccaaa aaaactgcgc tgcgaaaggg cgaaagaagt tgctaaaagc gcaaattttt
     6781 ctttcacaac ctcacgcgcg atttctcttt tatatttata gcctagctca tctgccatct
     6841 taaaaacggc tagtttagtt tgttcgctaa ccccattttt attgcctaaa gcttgcg
//
LOCUS       DABQVC010000151         6886 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.151,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000151 DABQVC010000000
VERSION     DABQVC010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6886
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.151"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..284
                     /locus_tag="IBJ56_002201"
     CDS             <1..284
                     /locus_tag="IBJ56_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="iron chaperone"
                     /protein_id="HAM3418448.1"
                     /translation="FPDLKPEIKWNTPMFTNNGTFIIGFSIAKQHMSVSPEVAGIERF
                     EADIKEAGYSHTKGIFRITWAKPVDYDLLAKIIEFNIQDKANYTSFWRV"
     gene            378..746
                     /locus_tag="IBJ56_002202"
     CDS             378..746
                     /locus_tag="IBJ56_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418449.1"
                     /translation="MRIFCGIMSIQAGFIGALAEILSPDSKKNNLFMIPEDLAASSGY
                     LMSLAMVLAGILIICAYRNDFLIFMALILWLFGLIFGLIFTPSYSGFYFRPIVCLISF
                     LMGLFIFTDYTRHQDTGEER"
     gene            complement(770..1885)
                     /locus_tag="IBJ56_002203"
     CDS             complement(770..1885)
                     /locus_tag="IBJ56_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HAM3418450.1"
                     /translation="MAERKVSWLELFFDLIFVTAVASTTHLLLSVDNHPDKTAVYFGE
                     YLLMVTPMFWAWVGQTMFFNRFGEKIKLPELYMLPQMFFLILMTASFDLTFSNTYYTF
                     LIGYLGIRLITVIQYFVISKQLTGNARKVAILLGSVFLLGVLTTATSVFFEGFARYLV
                     MYLGIAVDIILPLFLAKTLRKVPVDFPHLAERFGLFVIITFGESIVAITTILVGHTLD
                     PYTIGYTLLGFLIICTLWASYFHSFEKIVDHHKETHGQYLIYGHFFIIISVMLLAANV
                     HLLFEGHLERNVLLLMLFGSVAVFFVSKQFVFAAHKKAEVTFSFWKDALLLLLLVGLF
                     FVNLYSDFPLFVSFVSIWVCALVDLGLQFGTSRSARM"
     gene            2016..2681
                     /locus_tag="IBJ56_002204"
     CDS             2016..2681
                     /locus_tag="IBJ56_002204"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HAM3418451.1"
                     /translation="MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPTEEDMFSC
                     FRLCPYDQVKVVILGQDPYHGPGQAHGLSFSVQKGVRIPPSLRNIYKELKTDLDIEPA
                     DHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILW
                     GNHAIKAASGITNPQHLLIKGVHPSPLAASRGFFESKPFSKTNAFLEEHGRKPIDWDL
                     NEQ"
     gene            2849..3148
                     /locus_tag="IBJ56_002205"
     CDS             2849..3148
                     /locus_tag="IBJ56_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418452.1"
                     /translation="MKHNFTEDDFVYGESWGLVHRGVLEDKEVERMKALRDKVVGKKG
                     VAQTTLKPIGSVRIDGEVYEARLKTGYLEVGKPIIAVGIDFGYVLVNEDIQEGEK"
     gene            3145..4089
                     /gene="floA"
                     /locus_tag="IBJ56_002206"
     CDS             3145..4089
                     /gene="floA"
                     /locus_tag="IBJ56_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463922.1"
                     /note="flotillin-like protein involved in membrane lipid
                     rafts; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin-like protein FloA"
                     /protein_id="HAM3418453.1"
                     /translation="MTMIGPIIIAVLIIIFLIVFFTLVPVGLWISALSARVPVGLGTL
                     IGMRLRRVVPSRVVKPLIKAVKAGLDLEVNQLESHYLAGGDVDNTVDALIAAHRANIE
                     LDFSRAAAIDLAGRDVLEAVQTSVTPKVIRTPEFTGVAQNGVEVKVITQITVQSNIER
                     IVGGAGEDTVIARVGEAVVSTVGETREHTDVLENPNSISKKVQEQGLGDGTAYTILSI
                     DIAEMRIGDNIKAKLDIEKANADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPR
                     ALSRALEEGNLGVMDYYKMENVQSDTAMRESIAHEDEK"
     gene            4124..4573
                     /locus_tag="IBJ56_002207"
     CDS             4124..4573
                     /locus_tag="IBJ56_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418454.1"
                     /translation="MDLSDFLNSGWESVLVVLGIVGVIINFLSKAGKGTEEENKKAPQ
                     PRPNLRSMHQASRTQTTKKPEKRKVSQGTFTQNKEQDKVIAEQKAAQQKMLREIRRES
                     DVAKGKNIIKSTSSHHKKARKLRGRLQEAIITKEILDKPVSLRKNHL"
     gene            4717..5400
                     /locus_tag="IBJ56_002208"
     CDS             4717..5400
                     /locus_tag="IBJ56_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HAM3418455.1"
                     /translation="MKIIATRRKIFFAFIALMISFSVLFLPTTNASAATTYKMTTTAD
                     VNVRAADNTKGKVIGFYKKGTTVTFTAKTKNNWYKTTYKGKVGYVSGKCVTTYKAPVA
                     TTQSFTALNNEARKHIGKRYKIGATGPSCFDCSGYTQYVYSKGVKKSIPRTAKQQYAS
                     AKKIKAQELKKGDLIFFNYGKGVAHVGIYVGNGKMLNAQNNGVKYDTITSGYWKKYIA
                     GYGRVANLK"
     gene            5456..5881
                     /locus_tag="IBJ56_002209"
     CDS             5456..5881
                     /locus_tag="IBJ56_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418456.1"
                     /translation="MQYKIKEMPLEELEPKVVEGLLEHKERLGYDIPKKDTEYIGFAA
                     LSEVGEIVGGVTAKISYGELYVSLLSVDPSTQGSGVGTELMAQIERYGRANNCHHISL
                     TTFSYQAPGFYKKCGFTELGRVKDFPIIGEEKYFFIKYL"
     gene            complement(5884..6684)
                     /gene="proC"
                     /locus_tag="IBJ56_002210"
     CDS             complement(5884..6684)
                     /gene="proC"
                     /locus_tag="IBJ56_002210"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HAM3418457.1"
                     /translation="MKKIGFIGAGNMGTAMIRGLAQANLDNSEAIIVGGRNLEKLKPL
                     EAAFTGLQITTDTEKLVEQADIIILAVKPYTIPEILTSVKEQLTPDKIIISVAAGVTI
                     QDLEELTSAKTKIVRVMPNTPALVGEAMSSISPNINVSSEEINEVTAIFTSFGEAEVV
                     SENLMDAVIGVSGSSPAYVYMFIEALADGAVLSGMPRDKAYKFAAQAVLGAAKTVLET
                     GEHPGKLKDMVTSPGGTTIEAVKSLENDGFRSAVINAVQAAANKNSSM"
BASE COUNT         2364 a         1266 c         1360 g         1896 t
ORIGIN      
        1 cttttccaga cttaaagcca gaaatcaaat ggaatacacc gatgtttaca aataatggca
       61 cgttcataat cggcttctct attgcaaaac agcatatgag cgtttcccca gaagtggctg
      121 gaatcgaacg tttcgaagca gacattaaag aagcgggcta tagtcatacg aaaggtattt
      181 tccgaattac gtgggctaaa ccagttgact atgacctact agcaaaaatt atcgagttta
      241 atattcaaga taaagcaaat tatactagtt tttggcgcgt ttaagtgatt tttagttact
      301 ttgtcgcgta gtaaatccag attttttatg ccataattaa taagctaaaa tgtattttta
      361 taaaagagtg gtgtgaaatg cgtatttttt gtgggattat gtcaatccaa gcaggcttta
      421 ttggtgctct tgctgaaata ctaagtccgg acagtaaaaa aaataactta ttcatgatac
      481 cggaagatct tgcggcatca tcaggctatt taatgtctct tgcgatggtt ttagcgggaa
      541 ttctaataat ttgtgcttat cgaaatgatt ttctaatatt catggcacta attttatggc
      601 tctttggact tatttttggg ctcattttca ccccgagtta ttcgggtttt tatttccgcc
      661 caatcgtatg tttaataagc tttttaatgg gcctatttat ttttacagat tacacaaggc
      721 accaagacac aggcgaggaa aggtgagcga aatgctcatc tttttttatt tacattcgtg
      781 ccgaccgcga agtcccaaac tgcaaaccaa gatccaccag cgcacaaacc caaatactca
      841 caaaactaac aaatagagga aaatcactat acaaattaac aaaaaacagc cccactagaa
      901 gtaacaataa caacgcatct ttccaaaaag aaaatgtcac ttcggccttt ttatgagcag
      961 caaaaacaaa ttgtttcgaa acgaaaaaca cagctacaga accaaacaac atcaataaca
     1021 aaacattgcg ttccaaatgc ccctcgaaca acaaatgcac attcgccgca agtaacatca
     1081 ctgaaataat aataaagaaa tgtccataaa ttaagtactg gccatgggtt tctttatggt
     1141 ggtcgacaat tttctcaaag ctatggaaat acgatgccca aagcgtacaa ataattaaaa
     1201 agccaagcaa cgtgtaccca atcgtatagg gatcaagcgt gtgcccaact aaaatagtcg
     1261 taatcgcaac aatactttca ccaaatgtga tgataacaaa taatccaaaa cgttccgcaa
     1321 gatgtggaaa atcaaccggc actttgcgca atgttttagc taaaaataac ggtaaaataa
     1381 tatcaactgc aatcccaaga tacatcacta aataacgcgc aaatccttca aaaaacaccg
     1441 aagtcgcagt tgtcaaaaca cctagtagaa aaacactccc aagaagtatc gccactttcc
     1501 gcgcatttcc cgtcaactgc ttactaataa caaaatactg gataaccgta attaagcgaa
     1561 tacctaaata accaattaaa aaagtataat acgtatttga aaacgttaaa tcaaaactcg
     1621 ctgtcatcaa aattaagaaa aacatttgcg gcaacatata aagttcgggt agtttgattt
     1681 tctcaccgaa gcgattgaaa aacattgtct gcccaaccca cgcccaaaac atcggcgtga
     1741 ccatcaataa atattcgcca aaataaacag ctgttttatc cggatgatta tcgacgctaa
     1801 gtaacagatg cgtcgttgaa gcaacagcag ttacgaatat taaatcaaaa aatagttcta
     1861 gccaagaaac ttttctttcc gccacaatct caccccatta ttatttcttt tttcaagtat
     1921 accacgtgaa tccgcctgcc ttttgacagt tgctcgccgt gaaaagtata atggaaggac
     1981 aaaatcatgg aactactgag atgggagaat taaaaatggt aaaaacatgg gaagaatttt
     2041 taaaacaaga agcgaaacag ccttatttta tagaattaat ggaagcagtt aaggacgcga
     2101 gagcaaaggg gaatgtctat ccgactgaag aagatatgtt ttcgtgtttc cgcttatgtc
     2161 cgtatgatca agtgaaagtt gttattttag gacaagaccc gtatcatggt cctggacaag
     2221 cgcatggcct aagcttctcc gtgcaaaaag gggtgcgaat tccgccaagt cttcgtaata
     2281 tttataaaga attaaagaca gacttagata ttgaaccagc tgaccacggc tatcttgcca
     2341 aatgggcaga gcaaggcgta cttttaatga acacgagttg gagcgtggaa gaaggcaaag
     2401 ctggtagcca caaaaaacta ggctgggcaa catttacaga tcacgtttta gaagaactaa
     2461 ataattacga caaaccactt gtatttattt tatgggggaa tcatgctata aaagccgcaa
     2521 gtggcatcac aaacccgcaa catttactta ttaaaggagt acacccatca ccgcttgccg
     2581 cgagtcgagg cttttttgaa agcaaaccat tttcgaaaac gaatgcattt cttgaggaac
     2641 atggaagaaa accaattgat tgggacttaa acgaacagta aaaaaatacg ttattacaaa
     2701 attttgtttt ttctattata tagtttttta caaaagtgaa aaaatttaca taattcgcct
     2761 aaaagctttt tacataaggt ttctttcatg ttatggttat tataggagaa agtaaaattt
     2821 aaaaaagttc ctaaagaagg tgactagttt gaagcataat tttacagaag atgactttgt
     2881 ttatggagaa tcatggggac tcgtgcatcg gggggtttta gaggacaaag aagtagaaag
     2941 aatgaaagcg ctacgagaca aagtagtggg taaaaaaggc gtagcacaaa cgacacttaa
     3001 gccgataggt agtgtcagaa tagacggaga agtctatgaa gctcgcttga aaacaggtta
     3061 tttggaagtt ggaaaaccaa taattgcagt aggtatcgat ttcggatacg tactagtcaa
     3121 tgaagatata caggagggag aaaaatgaca atgattggac ctattattat cgcagtattg
     3181 attatcatct ttttaatcgt atttttcact ttagtaccag tggggttatg gattagtgca
     3241 ttatccgcac gtgtaccagt aggactagga actttaatcg gaatgagatt gcgtcgggtt
     3301 gtaccttctc gcgttgtaaa accgttaatt aaagcagtaa aagctggact tgatttagaa
     3361 gtaaaccaac ttgaaagtca ctatttagca ggtggggacg tggataacac agtagatgcg
     3421 ttaatcgccg cacaccgcgc aaatattgaa ttagatttca gccgtgcagc agcaattgac
     3481 cttgctggac gtgacgtact tgaagcagta caaacttccg taacaccaaa agttatccgt
     3541 acacctgaat ttactggtgt ggcacaaaac ggggtagaag taaaagttat tacgcaaatt
     3601 accgtacaat ccaatattga acgtatcgtc ggtggtgctg gggaagatac agttatcgct
     3661 cgtgtcggtg aagccgtagt ttctacagtc ggtgaaacga gagaacatac agatgtactt
     3721 gaaaatccaa acagcatttc gaaaaaagtc caagaacaag gacttggaga cggaactgct
     3781 tacactattt tatccattga tatcgctgaa atgcgtattg gtgacaacat taaagcaaaa
     3841 ctagacatcg aaaaagccaa cgcggacatg gaagttgctc aagcagctgc atcgaaacgt
     3901 aaagcagaag cgattgccct agaacaagaa aacagagcag cggttgtagc cgcagaagca
     3961 gaagtaccac gtgcgctatc tcgcgcttta gaagaaggta accttggtgt aatggattat
     4021 tacaaaatgg aaaatgtaca atcagataca gctatgcgcg aatcgattgc acacgaagac
     4081 gaaaaataaa ccttgatctt ttgcaagaaa gaaggtgttt tcaatggatt taagtgattt
     4141 tctaaatagt ggttgggaaa gtgttctagt tgtccttggt attgttggtg tcattataaa
     4201 tttccttagc aaggccggta aaggcacaga agaggaaaat aagaaagcgc cacaacctag
     4261 accaaatttg cgttcaatgc accaagcaag ccgtacgcaa accactaaga aaccagaaaa
     4321 acgcaaagtg tcacaaggga cattcacaca aaataaagaa caagacaaag taattgctga
     4381 acaaaaagca gcacaacaaa aaatgctaag agaaatccgc cgagaatcgg atgtggcaaa
     4441 agggaaaaac atcattaaaa gcactagtag tcatcacaaa aaagcgcgta aattgcgcgg
     4501 aagattacaa gaagcgataa ttacgaaaga aatccttgat aagcccgttt ctttacggaa
     4561 aaatcatcta taaaagcaaa cccaagaact agtttcttgg gttttttgtt tctgtgtcaa
     4621 aactgttaca taataacgcc aagttttaaa atccctgtat tacaactgta acattgacct
     4681 gctatgctgt gtgtatataa aaaaggggtg cgtggattga aaataatagc aacgagaaga
     4741 aagatttttt ttgcgtttat agctttaatg atttcttttt cagtactatt tttaccaaca
     4801 actaacgctt cagcagcgac tacatataaa atgacgacaa cggctgatgt aaatgttcgc
     4861 gcagcagaca acaccaaagg taaagtcatc ggtttttaca aaaagggtac aacggttact
     4921 ttcactgcta aaacaaaaaa caactggtat aaaacgacat acaaaggcaa agttggttat
     4981 gtttcaggta aatgtgtgac tacatataaa gcacctgttg caacaacgca aagttttacc
     5041 gcattaaata acgaagcaag aaaacacatt ggcaaacgct acaaaattgg cgctactggc
     5101 ccaagctgtt ttgattgttc aggttacaca caatatgtat actctaaagg agttaaaaaa
     5161 tccattcctc gtacagcgaa gcaacaatat gcctctgcta agaaaattaa agctcaagaa
     5221 ctaaaaaaag gtgatttgat tttcttcaat tatggtaagg gtgttgcaca tgttgggatt
     5281 tatgttggaa atggcaaaat gcttaatgcg caaaataatg gcgtaaaata cgacacaatc
     5341 acatctggct attggaaaaa atatattgct ggatatggac gagtagcaaa tttaaaataa
     5401 ttttactgag cgtcactttt tagtgatgct tttttgtatg aaggaggagt tagggatgca
     5461 atataaaata aaagaaatgc cactggaaga actagaacct aaagtagtag aggggctttt
     5521 ggaacataaa gaaagattag gttatgacat tccaaaaaaa gacacagagt atattggctt
     5581 tgcggcttta agtgaagtag gggaaatagt tggaggagtt acagcgaaaa tcagctacgg
     5641 agaattatat gtgtctcttc tttctgttga tccaagcaca caaggatcgg gcgtgggtac
     5701 agaattgatg gcccaaatag aaagatatgg tagagcaaat aactgccacc atatctcctt
     5761 aacaacattt agttaccaag ccccaggatt ttataaaaaa tgcggtttta ctgagcttgg
     5821 acgtgtaaaa gattttccta taataggaga agaaaagtac ttttttatta aatatttata
     5881 gaattacatc gaactatttt tgtttgcagc agcttgaact gcattgataa cagcggaacg
     5941 gaaaccatca ttttctagtg atttcactgc ttcaattgta gttccgccgg gagaagtaac
     6001 catatcttta agtttacctg gatgttcgcc ggtttctaga accgtttttg cggcacctag
     6061 cacagcttgt gcggcgaatt tatatgcttt atcgcgaggc atgccactta ggacggcgcc
     6121 gtctgctaaa gcttctatga acatataaac ataagctggt gaagaaccgc tgacgccaat
     6181 aactgcatcc atcaaattct cggaaacaac ttccgcttct ccaaaactag taaaaatagc
     6241 tgtaacttca ttaatttctt cagatgatac gtttatgtta ggcgaaatag atgacattgc
     6301 ttcaccgaca agcgctggtg tatttggcat cacacgaaca atttttgttt ttgcggaagt
     6361 gagttcttct aaatcttgga tagttacgcc agctgctaca gaaataataa ttttatcagg
     6421 tgttagctgc tcttttaccg acgttaaaat ttctgggata gtgtaaggtt tcaccgctaa
     6481 aataataata tctgcttgtt ctacgagttt ttcggtatcg gttgttattt gcaggccagt
     6541 aaatgccgct tccagtggtt ttaatttttc gagatttcga ccaccaacaa tgattgcttc
     6601 gctgttatct aaattcgctt gtgctaagcc ccgaatcatc gcagttccca tattacctgc
     6661 gccaataaag ccgattttct tcattttatt cgcccctaac aaaattcttt ttttctatta
     6721 tctcatgtta cacggctttg tccagttttt gctgaaggct atcactgtgt cacaggggct
     6781 tattctaaat acagcgatat taattttgat caatcatctc gtcgaaagta gtggaaaagg
     6841 tattatcgcc aaattttatc tatttctaat ggtttctaat tggcag
//
LOCUS       DABQVC010000152         6826 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.152,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000152 DABQVC010000000
VERSION     DABQVC010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6826
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.152"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..503
                     /locus_tag="IBJ56_002211"
     CDS             <1..503
                     /locus_tag="IBJ56_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HAM3418458.1"
                     /translation="KIAVIGEKTKEKLAEFGHEPNFVPSIYQSEVFLEEWLNENPEKT
                     SILIPQSNLSRTIIKDRLIEKGYIVVSFELYETIFPENSKIRLIEQLKLNETQIIVFA
                     SPSAWKNFYSTAKSFPAQKEKWHIASIGSITTEAIIADGWEVKYQPKTFTMKHLADLI
                     IQEELK"
     gene            500..1474
                     /gene="hemB"
                     /locus_tag="IBJ56_002212"
     CDS             500..1474
                     /gene="hemB"
                     /locus_tag="IBJ56_002212"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HAM3418459.1"
                     /translation="MKNQFDRHRRLRKTKTLRDLVRETVLHTDDLIYPIFVKDGKEPK
                     TEVASMPGVFQYPLHELEEEMRVVESLGIKAVILFGIPAEKDAVGTQAYHDHGIIQEA
                     TRLIKKSFPEILVVADTCLCEFTDHGHCGVIENGEILNDESLELLKQTAVSQAAAGAD
                     IIAPSNMMDGFVQVIREGLDEAGFYDIPIMSYAVKYASAFYGPFRDAAGSAPQFGDRK
                     SYQMDPANREEALREAMSDEQEGADFLIVKPSLSYLDIMRDVKNNTNLPVVAYNVSGE
                     YAMVKAAAQNGWIDEEKIVLEMLTSMKRAGATLIITYFAKDASKYLNK"
     gene            1487..2776
                     /gene="hemL"
                     /locus_tag="IBJ56_002213"
     CDS             1487..2776
                     /gene="hemL"
                     /locus_tag="IBJ56_002213"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HAM3418460.1"
                     /translation="MQNYSKSEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKG
                     AYITDVDGNEYIDYVLSWGPLILGHADPAVVNAITKAALKGTSFGTPTEIETELAKLV
                     IERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGV
                     ATLGLPDSPGVTKGLAADTITVPYNDIEGAELAFQKYGEEIAAVIVEPVAGNMGVVPP
                     IDGFLEGLRELTTKFGSLLIFDEVMTGFRVDYYSAQGYYVVTPDLTCLGKVIGGGLPV
                     GAYGGKKEIMEQIAPAGSIYQAGTLSGNPLAMNAGFETVRQLTPQHYDVFRTLIKRME
                     EGLTEISARRQVPLSINKAGSMFGFFFTDQKVINFDTAKTSNLEFFRNYYREMLGQGI
                     FLPPSQFEGVFISTMHTEKEIDKTLEAFDTTCKILRG"
     gene            3100..5751
                     /locus_tag="IBJ56_002214"
     CDS             3100..5751
                     /locus_tag="IBJ56_002214"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HAM3418461.1"
                     /translation="MTIEHNEINMPTKYEPSNVEAGKYKWWLEKEFFKAEGNTDKKPY
                     SIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGFDTLYLPGMDHAGIATQAKVEAK
                     LKESNVSRYDLGRENFVDKTWEWKEEYAEFIREQWEKLGLGLDYSRERFTLDDGLSDA
                     VKKVFVTLYNKGLIYRGQYIINWDPEAKTALSDIEVIHKDIEGSFYHLKYPLTDGSGY
                     LEVATTRPETIPGDTAVAVHPKDERYQHLIGKTIMLPILNREIPIVADEYVEREFGSG
                     AVKITPAHDPNDFEVGNRHELPRIIVMHEDGTMNKNAGKYDGLDRFVARKEIIQDFKD
                     LGLFIKQEPHLHSVGHSERTGAVVEPYLSLQWFVKMEPLAAEALELQKTENKVNFVPA
                     RFEKTYETWMDNIHDWCISRQLWWGHRIPAWYHKETGEIYVGESEPENLSEWEQDEDV
                     LDTWFSSALWPFSTMGWPDTENPDFQHFFPTNTLVTGYDIIFFWVSRMIFQSVEFTGE
                     RPFKDTLIHGLVRDSEGRKMSKSLGNGVDPIEVIDKYGADSLRYTLATGSSPGQDLKF
                     SYEKVESTWNFINKIWNASRFVLMNLDGMKYNEIDLSNVTEVSDKWILTRLNETIQAV
                     TSLGEKYEFGEVGRTLYNFIWDDFCDWYIEIAKIPLYGEDEVAKQTTRSVLAYTLNAT
                     MRLLHPFMPFVTEEIWQNLPHEGESITIAEWPKVNEQQIDTKSSTAMATLVEVIRAVR
                     NIRSEVNTPLSKPIVLEIKPKDTTYKEILEQNISYIERFCNPEQVTISFDVEASKTAM
                     TAVVSGAEIFIPLEALIDLNVEIARLEKELEKWNKEVARVQGKLNNERFISKAPESVV
                     AEERLKEKDYLDKKASVLERIETLKEV"
     gene            5813..>6826
                     /locus_tag="IBJ56_002215"
     CDS             5813..>6826
                     /locus_tag="IBJ56_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HAM3418462.1"
                     /translation="MTLNSYEEALDWIHGTLRLGIKPGLARMEYMMEKLNHPEKANKW
                     VHIAGTNGKGSTLTFVRNALEEAGYRTGTFTSPYIEVFNERISINGEPISDEMIVSLA
                     NRIKPIAEELEKTIYGPPSEFEIITAMMFLCFAEYVSIDIGIIEVGLGGRLDSTNILV
                     PLISVITTIGMDHMEFLGDTIEQIASEKAGIIKPGIPVVSGAIQKEAQEVIAKIAKKN
                     KSNVAQLNETFFMHNENGNITYKTIYGEEISNLSIGLLGLHQLNNAAVAIKVLQYLNT
                     FSTFEIGLAAIKKGLEKAFWPGRMEKIISNPFIMLDGAHNPEGIKTFAHSIQKYSGPK
                     KIIV"
BASE COUNT         2328 a         1073 c         1432 g         1993 t
ORIGIN      
        1 ataaaatagc tgtcatcggt gaaaaaacaa aagaaaaact ggcagaattt ggtcacgaac
       61 caaattttgt cccatctatc tatcagtcag aagtattttt agaagaatgg ctaaacgaaa
      121 acccagagaa aacaagtatc ttaataccac aaagtaattt aagcagaaca ataataaaag
      181 atagattgat tgaaaaaggt tacatcgttg tttcgtttga gctctatgaa acaatctttc
      241 cagaaaattc taaaatacgg ttaatcgaac aactgaaact aaatgaaaca caaataattg
      301 tttttgccag cccatctgca tggaaaaact tctattccac tgcgaagtca ttccctgctc
      361 aaaaagagaa gtggcatatt gcatccattg gtagtattac aacagaagcc attatagcag
      421 atggatggga agtaaaatat caaccaaaaa ccttcaccat gaagcaccta gctgatttga
      481 taatacagga ggaattaaaa tgaaaaatca atttgataga catcgtcgtc taagaaaaac
      541 caaaacactg cgtgatttag taagagaaac agttttacat acagatgatt taatctatcc
      601 gatttttgtt aaagatggca aagaaccaaa aacagaagta gcttctatgc ctggggtttt
      661 tcaatatcct ttacatgaac tagaagaaga aatgcgcgta gttgagagcc ttggtattaa
      721 agcggttatt ttatttggta ttcctgccga gaaagacgca gttggcacgc aagcttatca
      781 cgaccacgga attattcaag aagctacaag gcttataaaa aaaagttttc ctgaaattct
      841 tgtggtggct gacacatgtt tatgtgaatt tactgatcat ggacattgtg gtgttattga
      901 aaacggggaa attctcaatg acgaatcgct tgaattattg aaacaaacag ctgtcagtca
      961 agccgctgca ggagcggata tcattgctcc atctaatatg atggatggtt ttgttcaagt
     1021 cattcgcgaa gggttagatg aagcgggatt ttatgatatc ccaattatgt catatgcagt
     1081 taaatatgcg tctgcttttt atggaccgtt ccgtgatgct gctggtagtg cccctcaatt
     1141 tggtgataga aaatcttatc aaatggatcc tgccaatcgt gaagaagctc ttcgcgaagc
     1201 aatgtcggat gaacaagaag gtgcagattt ccttattgtt aaaccatcat tatcatactt
     1261 agatatcatg cgcgatgtta agaacaatac caatttacca gtagttgcct acaatgttag
     1321 tggtgaatat gcaatggtaa aagcagctgc gcaaaatggt tggatagatg aagaaaaaat
     1381 tgttttagaa atgctaacaa gtatgaaacg agcgggtgca acacttatca ttacttattt
     1441 tgcaaaagat gcatccaaat atttaaataa ataggaggta agaaatttgc aaaactattc
     1501 gaaatccgaa aaggccttta aagaagccaa aaaagtctta cctggtggtg taaatagccc
     1561 tgttcgagca ttcaactctg tagatgcctc gccagttttt atggaccacg gaaaaggcgc
     1621 ttatattaca gatgttgatg gtaacgaata tattgattat gtgttatctt ggggccctct
     1681 aattttaggg cacgctgatc cagctgttgt taatgctatt acaaaagcag ctctgaaagg
     1741 taccagcttt gggacgccta ctgagattga aactgaatta gcaaaattag taattgaacg
     1801 tgtgccatct attgaaattg ttcgtatggt ttcatcagga acggaagcaa cgatgagtgc
     1861 tattcgtttg gctcgcggtt atacaaaaag agaaaaaatc ttgaaatttg aaggaagtta
     1921 tcacggacat ggagattctt tattaattaa agctggttca ggggtagcga cactcggatt
     1981 accggattct ccaggagtta ctaaaggtct tgcggcagat acaataacag tcccatacaa
     2041 tgatattgaa ggagccgaac tggccttcca aaaatatgga gaagaaatag cagcagtcat
     2101 agttgaacca gtcgcgggca atatgggtgt tgttcctcca attgatggat ttttagaagg
     2161 acttcgagag cttactacaa aatttggctc cttgctcatt tttgatgaag ttatgaccgg
     2221 atttagagta gattactatt ctgctcaagg ctattatgtg gtaacgcccg atcttacttg
     2281 tttaggaaaa gtgattggtg gtggtttacc agttggtgct tatggtggaa agaaagaaat
     2341 tatggaacag attgctcctg ctggttctat ttatcaagcg ggaactttat ccggaaatcc
     2401 attagcaatg aatgctggct ttgaaacagt tcgccaacta acgccgcaac actatgatgt
     2461 tttccgcacc ctaattaagc gaatggaaga aggacttaca gagatatctg ctagaagaca
     2521 agtcccgctc tcgattaata aggctggttc gatgttcggc tttttcttca ctgatcaaaa
     2581 agtgattaat tttgatacag caaaaacaag taatctagaa tttttccgaa attattaccg
     2641 tgaaatgtta ggtcaaggca ttttcttacc accgtctcag tttgagggtg tcttcatttc
     2701 tacgatgcac accgagaaag aaattgataa gaccttggaa gcatttgata cgacatgcaa
     2761 aatacttcgc ggctaattga cgaatcttga aacttttgtt aaaattattt ctagtatata
     2821 gaatcaaatg caatgaagag gaagagtagg acatttattt ttttaaagag agaaagcggt
     2881 tggtgcaagc tttcaaaaat gatgtctgaa ggtagccttg gagcagtatt cctgaattta
     2941 tagtaaggaa taaccggtag atttctctat cgttaacaca atgaagtgcc tgcaattttt
     3001 ttctgtgggt aaaaaggtgg taccgcgaat aatactcttt tcgtcctttt atgaggatga
     3061 gaagagtttt ttattttgcc taaaaaagga ggaatcatta tgacaatcga acacaatgaa
     3121 ataaatatgc ctacaaaata tgagccgagt aacgtagaag caggtaaata taaatggtgg
     3181 ctagaaaaag aattctttaa agcagaagga aatacggata aaaaacctta cagtattgtt
     3241 attccaccac caaacgtaac aggtaaacta catttaggcc atgcgtggga tacaacttta
     3301 caagatatta ttactcgaat gaaaagaatg caagggtttg acactttata tttaccagga
     3361 atggatcatg ctggtattgc aacgcaagct aaagtagaag cgaaattaaa agaatctaat
     3421 gtttctcgtt atgacttagg acgagaaaac tttgtggata agacttggga atggaaagaa
     3481 gaatacgctg agtttattcg tgaacaatgg gagaagttag gccttggttt agactactca
     3541 agagaacgat ttacactaga tgatggttta tcggatgccg taaaaaaagt attcgtaaca
     3601 ttatataata aaggtcttat ttatcgcggc caatatataa taaactggga cccagaagcg
     3661 aaaacggctt tatctgatat tgaagtaatt cataaagata ttgaaggcag tttctatcat
     3721 ttgaaatatc cattaactga tggctctggt tacctagaag tagctacaac acgtcctgaa
     3781 acaataccgg gtgatacagc tgttgcggtt cacccaaaag atgaaagata tcaacactta
     3841 attggtaaaa ccatcatgct accgattttg aatagagaaa ttcctattgt tgctgatgaa
     3901 tatgtggaaa gagagtttgg ctctggtgca gttaaaatta cgcctgcaca tgatccgaat
     3961 gattttgaag tagggaatcg tcatgagttg ccaagaatta ttgtcatgca tgaagatggg
     4021 acaatgaata aaaatgctgg taaatatgat ggtttggacc gttttgtagc tagaaaagaa
     4081 attattcaag atttcaaaga cttaggttta tttatcaaac aagaacctca cttgcattca
     4141 gtggggcatt cagagcgaac tggagcggta gtagaaccct atctttcact acaatggttt
     4201 gtgaaaatgg aacctcttgc tgcagaagca ctggaacttc aaaaaacgga aaacaaagtg
     4261 aattttgtac cagctagatt tgaaaaaaca tatgaaactt ggatggataa cattcacgat
     4321 tggtgtattt cgcgtcaatt atggtggggt cacagaatcc cggcttggta tcataaagaa
     4381 acaggtgaaa tttatgttgg tgaaagcgaa cctgaaaacc tttctgaatg ggaacaagat
     4441 gaagatgtac tagatacttg gtttagttcg gctttatggc cattttcaac aatgggctgg
     4501 ccagatactg agaatccaga tttccaacat ttcttcccaa ctaatacttt agtaactgga
     4561 tacgatatta ttttcttttg ggtatctaga atgattttcc aatctgttga atttactggt
     4621 gagagacctt ttaaagatac attgattcat ggtttagtgc gtgactctga aggacgtaaa
     4681 atgtctaagt cgcttggtaa tggtgtggac ccaattgaag ttattgacaa atatggagca
     4741 gattctcttc gttatacact tgcaacaggt tcatcaccag gtcaagattt gaaattcagc
     4801 tatgaaaaag tagagtctac ttggaatttc attaataaga tttggaatgc atcccgtttt
     4861 gtgttaatga atttagatgg gatgaaatat aatgaaattg atttgtctaa tgttactgaa
     4921 gttagtgata aatggatatt gactagactt aatgaaacaa ttcaagcggt tacctcctta
     4981 ggtgaaaaat atgaatttgg tgaagtggga cgaacgttat ataactttat ctgggatgat
     5041 ttctgtgatt ggtatataga gattgcgaaa atacctcttt acggagaaga tgaagtagca
     5101 aaacaaacaa ctagatctgt acttgcgtat actttgaatg cgactatgcg attacttcat
     5161 ccatttatgc cttttgtaac agaagaaatt tggcaaaatt tacctcacga aggggaatct
     5221 attacaattg ctgaatggcc aaaagtgaat gaacaacaga ttgatactaa atcttctacg
     5281 gccatggcta ctttagttga agtgattcgt gctgtccgga atattcgatc tgaagtgaat
     5341 acgcctctta gtaagccaat tgttcttgaa attaaaccga aagatactac gtataaagaa
     5401 attctagaac aaaatatttc ttatattgaa cgtttttgta accctgaaca agtgacaatt
     5461 tccttcgatg ttgaagcatc taaaacggcg atgactgctg tagtatctgg agcagagatt
     5521 ttcattcctt tagaggcgtt aattgattta aatgtagaga ttgctcgact tgaaaaagaa
     5581 ctagaaaaat ggaataaaga agtggcaaga gttcaaggga aactaaacaa tgagcgattc
     5641 attagcaaag ctcctgagag tgtagttgca gaagagcgtc taaaagaaaa agattatcta
     5701 gataaaaaag cctctgttct tgaaagaatt gaaacgttaa aagaagtata aaaaacgaac
     5761 tgaccttatc atgaaatcaa ctggtagggt cagttttaag gtggtttaaa taatgacatt
     5821 aaattcgtat gaagaagcat tagattggat tcacggaacg cttcgtctag gaataaagcc
     5881 tggactagct cgtatggagt atatgatgga aaagctaaat catccggaaa aagcgaataa
     5941 gtgggtacat attgctggaa caaatggaaa aggctcaaca cttacttttg ttagaaatgc
     6001 tctagaagaa gctggatata gaacgggaac cttcacttca ccatacattg aagtttttaa
     6061 tgaacgaatt agtattaatg gtgaaccgat tagcgatgaa atgatcgttt cattagctaa
     6121 ccgaattaaa cctattgcgg aagagctaga aaaaactatt tatggaccac cttcagaatt
     6181 tgaaattatt acagctatga tgtttttatg ctttgcggaa tatgtttcca ttgatattgg
     6241 tattatcgaa gtaggactag gcggaagact ggactctacg aatattctag tgccactaat
     6301 ttctgtaatt accacgattg ggatggatca tatggaattc cttggggata caatcgagca
     6361 aattgctagt gaaaaagctg gcataattaa gccaggaata ccagttgttt caggtgctat
     6421 acaaaaagaa gctcaagaag ttatagctaa gatagcaaaa aagaataaat ccaatgttgc
     6481 tcaattaaat gagacttttt tcatgcataa tgaaaatgga aatataactt ataaaactat
     6541 atatggagaa gaaataagca atctttccat tgggctgctt ggtcttcatc aattgaataa
     6601 tgcggcggta gctattaaag tattacagta cttaaataca ttttctacct ttgaaattgg
     6661 tttggcggca attaaaaaag gcttggaaaa agcattttgg ccaggaagaa tggagaaaat
     6721 catttcaaat ccatttatta tgctggatgg agcgcataat ccagaaggta ttaaaacatt
     6781 cgctcattcc atccaaaagt attctgggcc taagaaaata atcgtg
//
LOCUS       DABQVC010000153         6794 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.153,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000153 DABQVC010000000
VERSION     DABQVC010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6794
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.153"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1015
                     /locus_tag="IBJ56_002216"
     CDS             <1..1015
                     /locus_tag="IBJ56_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HAM3418463.1"
                     /translation="EWIAFKQTELYQHIGNHGNSELKISNLFSAVFKKHSKEEGEKVF
                     IAGTKYTTPAISDIPHSWPHPWVFSRVFLVLIVTYFLLLACTYLFDNSNTIPGLMVIG
                     SFAVPFSVLLFFFETNAPRNISVFDVVRMFFIGGVAALVATLVIYSIIPVGKLNYFNA
                     LLVGFIEETGKMIIVALFIRSLNSKYILNGLLIGAAVGAGFAAFESLGYAFNYSVDAA
                     FLFKDIHIAGETMLNVIFSRGWQSIGGHVAWAAITGAALVIAKGDQKLGMHHIFTGTF
                     WKWFIIPIALHFIWDCPFNPLPAIAFKQIVLIIVVWFVILRLISKGLKQVSVISAASK
                     AAK"
     gene            1162..1992
                     /gene="proB"
                     /locus_tag="IBJ56_002217"
     CDS             1162..1992
                     /gene="proB"
                     /locus_tag="IBJ56_002217"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HAM3418464.1"
                     /translation="MRESLKNSKRLVIKVGTSTLMYGNGHINLRTIEKLAMVLSDLRN
                     EGKEVILVSSGAIGVGCHKLQLPVRPTSIPDLQAVASVGQSELMHIYSKFFGEYGQVV
                     GQVLLTRDVTDFPISRENVMNTLDSLLSRGIIPIVNENDTVAVEELEHVTKYGDNDLL
                     SAIVAKLVQADLLIMLSDIDGFYGSNPATDPEAVMFSEINQITPEIEALAGGRGSKFG
                     TGGMLTKLSAASYCMDSNQKMILTNGKNPTVIFNIMQGEQIGTLFASKKEELSHDRTH
                     "
     gene            1976..3223
                     /locus_tag="IBJ56_002218"
     CDS             1976..3223
                     /locus_tag="IBJ56_002218"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HAM3418465.1"
                     /translation="MTELIKKGSGAKEASQFLAQATTKHKNAALLNLSNDLLIHTATL
                     LQENEKDILRAKQKGTPETMIDRLRLTEERIKEISEAVKQVVALKDPIGEVTNMWKNE
                     AELTIGKTRVPLGVIGIIYESRPNVTVDASVLCFKTGNAVILRGGSDAIDSNKALMSV
                     IQDSLEASGFPRSSVQLIEDTSRETARDMMRLNRFLDVLIPRGGARLIQTVLENATVP
                     VIETGTGNCHIYVDKAAEKQMAIDILVNAKCSRPSVCNAAETLLIHRDVAEDYLPAME
                     TALKEYDVELRADERAKEILQEAKAAKESDWEDEFLDFILAVKVVDSAEEAIEHINKY
                     GTKHSEAIISNDYATGQAFHQKVDAAAVYINASTRFTDGFAMGFGAEIGISTQKLHAR
                     GPMGLTELTSTKYIIFGDGQIRN"
     gene            complement(3249..4163)
                     /locus_tag="IBJ56_002219"
     CDS             complement(3249..4163)
                     /locus_tag="IBJ56_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3418466.1"
                     /translation="MYKQMKLKATDGLDLHLHIWDEVKNPVGVVQIVHGMAEHGARYG
                     LFAERLNQAGYIVVADDHRGFGKSAIDEASLGHLDGETGFQNMVEDEAVVRTYLKESY
                     PELPYFIFAHSMGSFIIRTFMAKHQVDGVILSGSGLQPIALLKMGQMITKQRVKKDDR
                     KRSGFLNKLAFWGYNKPFNENHRFSWLSRDVAIYEAYEQDPFCGPVVGTSGFFHNLFE
                     AVKVSQQKETLESVPKDLPVLLLSGSDDPVGHFGKDTPKIALSLEKAGVEDVTYKIYE
                     GARHELVNELCKETVFQDVIDWLDEKRR"
     gene            4352..4816
                     /locus_tag="IBJ56_002220"
     CDS             4352..4816
                     /locus_tag="IBJ56_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418467.1"
                     /translation="MDNCLAQLQMYDYLLKKYRNKEVFPDTRMIVEIDGKLWTGDFLQ
                     LDDCHIIEIDWEDTRFTRIERTKDAINDEFNEKVTNSNVNVSENRIDSKIGSLKNIEI
                     LYQEIGNFVRQVESSTTTLKPLLYNAYCLDTRVKLPFLDISKKEITLVSLTN"
     gene            complement(4855..5316)
                     /locus_tag="IBJ56_002221"
     CDS             complement(4855..5316)
                     /locus_tag="IBJ56_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HAM3418468.1"
                     /translation="MKHVRTAAIITHQNKILLHSNQEEDYWTLPGGAVENESTKEGLK
                     REMKEELGEDVAILELSIIAENRFLYRGEEIDSIEFYYAVKLLPESSLLNQPTFTKIE
                     EFGQYGEEAYKLHFKWFDIDKLKNITILPTFLETELANLSSKNIIHLEQTT"
     gene            5434..>6794
                     /gene="treP"
                     /locus_tag="IBJ56_002222"
     CDS             5434..>6794
                     /gene="treP"
                     /locus_tag="IBJ56_002222"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
                     /protein_id="HAM3418469.1"
                     /translation="MVDYTKDASALLELIGGKENISSVTHCATRMRFVLQNPDNADVE
                     AIEDIPAVKGTFTQAGQFQVIIGNDVAIFYNEFSKISGVEGVNKEDAKVDAKKNMSIL
                     QRLLAGLAEIFTPLIPAIVVGGLILGFRNVIGDIKFLEDGTKTIVDVYPFWAGVYSFL
                     WLIGEAVFHFLPVGITWSIAKKMGTTQILGIVLGLTLVSPQLLNAYSVVETKAGDIPV
                     WDFGFAQVQMIGYQAQVIPAIMAGFLLAYLEIWLRKFIPNAISMIFVPFFALVPTVLA
                     AHVILGPIGWKIGDAISNVVYAGLTGGLSWLFAALFGFLYAPLVVTGLHHMTNAIDLQ
                     LMSQFGGTNLWPMIALSNIAQGSAVLAIIFLHRGNEKEEQVSIPATISCYLGVTEPAM
                     FGINLKYLYPFVAAMIGSAIAAVVSVSSGVMANSIGVGGLPGILSINPKYYAVFAVCM
                     LIT"
BASE COUNT         2015 a         1253 c         1280 g         2246 t
ORIGIN      
        1 agagtggatt gcatttaagc aaacagaatt atatcaacat attggaaacc acgggaattc
       61 agaattaaaa attagcaacc ttttctctgc tgttttcaaa aagcactcta aagaagaagg
      121 cgaaaaagtc tttattgctg gtactaagta tactactcca gcaataagtg atatccctca
      181 ttcttggcca catccttggg tattctcccg agttttctta gtgttaatcg tcacgtattt
      241 tttacttcta gcatgtacat atttgtttga taacagtaat acaataccgg gccttatggt
      301 aattggttca tttgcagttc cgttttctgt tttattattc tttttcgaaa cgaatgcacc
      361 tcgtaacatc agcgtttttg atgtagtgcg aatgttcttt atcggtggtg tagcagcgct
      421 tgttgcaaca cttgttattt actccattat tccagttgga aaattaaatt attttaatgc
      481 acttttggtt ggttttattg aagaaactgg gaaaatgatt attgttgctc tcttcattcg
      541 ttcattaaac tcgaagtaca ttttaaatgg tttacttatc ggtgccgctg ttggggctgg
      601 atttgctgca tttgaatcac ttgggtacgc gtttaactat agtgtggatg ctgccttttt
      661 attcaaagat attcatattg ccggtgaaac gatgctcaat gttatcttta gccgtggttg
      721 gcagtctatc ggcggccatg ttgcctgggc tgctattact ggtgccgcac ttgttatcgc
      781 taaaggtgat caaaaacttg gaatgcacca cattttcaca ggaactttct ggaaatggtt
      841 tattattccg attgctttac atttcatttg ggattgcccg ttcaatccgc ttccagcaat
      901 tgcattcaaa caaattgttt taatcattgt tgtttggttc gttatcttac gacttattag
      961 taaaggtttg aaacaagttt cagtcatttc tgccgcgagt aaagcagcta aataaaaaat
     1021 aagtcctaag aaaatttctt aggacttatt tttatactca aaattaaaaa tctgaagctc
     1081 ataaacttga ttctaatatg gacatatctg cattttcatg taaaatagaa gtattatctt
     1141 attagcagag gggtcataga aatgcgcgaa tctttaaaaa atagtaagag attagtcatc
     1201 aaagttggta caagtacatt aatgtatgga aatggccata taaatttacg taccattgag
     1261 aaattagcga tggttttatc tgatttacgt aacgaaggaa aagaagtcat tcttgtttct
     1321 tctggggcaa tcggcgttgg ttgtcataaa ttacagcttc cagtaagacc tacaagtatc
     1381 cctgacctac aagctgtcgc gtcggttggt caaagtgaac taatgcatat ttatagtaaa
     1441 ttttttggtg aatatggaca agtggttgga caggtgttgc ttacacgtga tgtaactgac
     1501 ttccctatta gccgcgaaaa tgttatgaat actttagaca gtttattaag ccgtggtatt
     1561 atccctatcg taaatgaaaa tgataccgtt gctgtagaag aactggagca tgtaacgaaa
     1621 tacggggata atgatcttct ttcagccatt gtcgctaaac tggttcaagc tgatttgctt
     1681 attatgcttt ctgatattga cggcttttat ggtagtaacc ctgcaacaga tccagaggct
     1741 gttatgttct ctgaaatcaa ccaaatcact ccagaaattg aagcccttgc tggaggacgc
     1801 ggttctaaat ttgggactgg tggtatgttg accaagcttt ctgctgcttc ttattgtatg
     1861 gattctaacc aaaaaatgat tttaacaaac ggtaaaaacc ctaccgtcat ttttaatatt
     1921 atgcaaggtg aacaaattgg tactttattc gcaagtaaaa aggaggaact ttcacatgac
     1981 cgaactcatt aaaaaaggga gtggcgctaa agaagcttcc caatttttag cacaagcaac
     2041 aacaaaacac aaaaacgcag cactgcttaa tttaagtaat gatttgctta tccatacggc
     2101 tacacttttg caagaaaatg aaaaggacat tcttcgcgct aagcaaaaag gaacacctga
     2161 aacgatgatt gatcgtcttc gtcttacaga agaaagaatc aaagagatat cggaagcggt
     2221 taaacaagtg gtcgcgttaa aagatccaat cggtgaagta acaaatatgt ggaaaaatga
     2281 agccgagtta actattggta aaacaagagt tccacttggt gttattggta ttatttatga
     2341 atctaggccc aatgtaactg tcgatgcttc tgttctttgt tttaaaactg gaaatgcggt
     2401 gattttgcga ggtggtagtg atgctattga ttccaataaa gccttaatgt ccgttattca
     2461 ggattccctt gaggcatctg gtttccctcg ttctagtgtc caattaattg aagatacatc
     2521 acgagaaact gctagagaca tgatgcggtt aaatcgcttt ttagatgttc tcattcctcg
     2581 tgggggcgca aggttaattc aaacagttct tgaaaatgca actgttccag tcatcgaaac
     2641 aggtactggt aattgtcata tttacgtaga taaagcagca gagaaacaaa tggctataga
     2701 tattttagtt aatgctaagt gttcgcgccc ttctgtatgc aatgctgcag aaactttgct
     2761 cattcatcga gatgtcgccg aagattatct tccagcgatg gaaactgcgc taaaagaata
     2821 tgatgtcgaa ctacgtgcgg atgaacgtgc gaaggaaatt ttacaagagg caaaagcagc
     2881 gaaagagtcc gactgggaag atgaattttt agattttatc ctagctgtta aagtagtcga
     2941 ttccgctgaa gaggctattg aacatattaa taaatatggc accaagcact cagaagcaat
     3001 tatttctaat gattacgcga ctggtcaagc attccatcaa aaagtagacg cagcagccgt
     3061 ttatatcaat gcttctactc gattcactga tggttttgcc atgggatttg gcgctgaaat
     3121 tggcattagt acacaaaaac ttcatgcacg tggaccaatg ggcttaacag aacttacatc
     3181 gactaaatat attatttttg gagacggtca aatccgtaat taaaaagaag gtagcctatg
     3241 attttaggct accttctttt ttcatccaac caatcaatta catcttgaaa aacagtttct
     3301 ttacataatt cattcaccag ttcatgacga gcaccttcat aaattttata agtaacatcc
     3361 tctaccccag ctttttctaa ggataaagca attttaggtg tgtcttttcc gaaatgccct
     3421 accggatcat cacttccaga aagcaacaac actggcaaat cctttggcac actttccaat
     3481 gtttcttttt gttgacttac ctttacggct tcaaaaaggt tatggaaaaa accacttgtt
     3541 ccaactactg gaccgcaaaa tggatcttgt tcataggctt cataaatcgc aacatcccgc
     3601 gaaagccaac taaaacgatg attttcatta aatggtttat tataacccca aaatgctaat
     3661 ttatttagaa aaccacttct ttttctatca tcttttttca ctctttgttt tgtaatcatt
     3721 tggcccattt ttaaaagagc tatcggttga agtccgctac cgctgagaat tactccatca
     3781 acttggtgtt ttgccataaa ggttcgtata ataaaacttc ccatgctgtg cgcaaaaatg
     3841 aagtaaggta attcaggata gctttctttt aaataagttc ttactaccgc ctcatcttct
     3901 accatatttt gaaaaccagt ttctccatct aaatgaccta aagatgcctc atctatggct
     3961 gatttcccaa aaccacggtg atcatcggct acgacaatat atccagcctg attcaaacgt
     4021 tccgcaaaca agccgtatct tgccccgtgt tctgccatcc catgaacaat ttgaactaca
     4081 ccaactggat ttttcacttc atcccaaata tgtaaatgca aatcgagtcc atctgtagct
     4141 tttaatttca tttgtttgta catctgtctc cctcccattt catcttatta ttagtatacc
     4201 acctgatagt tattttcact atttcacaga ctttttttag gacttttgta taactagtta
     4261 aaaagttaca gttccaacta ttcatttcta tattgaagat tgttcacata atcacaatat
     4321 gttataatag tcccataagg agatgacaca catggataac tgtttagcgc aattacaaat
     4381 gtatgattat ttactcaaaa aataccgtaa caaagaggtt ttccctgata cgagaatgat
     4441 tgtcgagatc gacggcaaac tttggactgg tgattttctt caactggacg attgccatat
     4501 catcgaaatt gattgggaag atactcggtt cacgcgtatc gaacgtacga aagatgctat
     4561 caatgatgaa tttaacgaaa aagttacgaa ctctaatgta aacgtaagtg aaaatcgtat
     4621 cgattccaaa attggtagtt taaaaaacat tgaaatattg tatcaagaaa ttggcaattt
     4681 tgttcgccaa gtagaaagtt ctactacaac attaaaaccg ttactctata acgcttattg
     4741 tttagataca cgggttaaat taccattctt agatatcagt aaaaaagaga ttaccttagt
     4801 atctttaact aattaaataa aatcccgcga aacgtaaaaa tttcgtggga ttttttatgt
     4861 tgtctgttcc aaatgtataa tatttttact tgaaagattt gctagctctg tttcgagaaa
     4921 tgttggtaaa atggtgatat ttttcaactt gtctatatcg aaccatttaa aatgcagttt
     4981 atatgcctct tccccgtatt gaccaaattc ttctattttt gtaaatgtag gttgattaag
     5041 taaactgctc tctggtaaca gtttaaccgc ataataaaac tcaatactat ctatttcttc
     5101 gccgcgatat aaaaagcgat tttccgcaat aatgctcaat tctaaaatag ccacatcttc
     5161 cccgagttct tctttcattt cacgttttaa tccttctttt gttgattcat tttccactgc
     5221 accgcccgga agtgtccagt aatcttcttc ttggtttgag tggagcaaaa ttttgttttg
     5281 atgcgtgata attgctgcag ttctaacgtg tttcatggcc actcctcctt cttttttatt
     5341 ttagcacaaa taaagtggtt gcgctttcaa attatttata gtatagtaat ggcgaacaac
     5401 ttgtatatac aagttaaaaa aggaggaagt tttatggttg actatacaaa agatgcaagc
     5461 gctcttttag agttaattgg tggcaaagaa aatatatcat ctgtcacaca ttgtgctacg
     5521 agaatgcgtt ttgttttgca aaatccagat aatgccgatg ttgaagccat cgaagacatt
     5581 ccagcagtaa aagggacatt tacacaagct ggtcaatttc aagtaattat aggtaatgat
     5641 gtagctattt tttataatga attttcaaaa attagtggtg tggaaggtgt caataaagaa
     5701 gatgccaaag tagatgcgaa gaaaaatatg agtattcttc agcgtttact tgctggttta
     5761 gctgaaatat tcactccatt aattccagca attgttgttg ggggtcttat tctcggtttc
     5821 cgtaacgtaa ttggagatat taagttttta gaagacggca cgaaaacgat tgtggatgtt
     5881 tatccatttt gggctggtgt ttatagtttc ttatggctta tcggtgaggc tgtattccac
     5941 ttcctaccag ttggaattac atggtccatc gcgaaaaaaa tgggaaccac acaaattctt
     6001 gggattgtcc ttggcttaac gcttgtttcc ccgcaattac taaatgctta tagcgttgtt
     6061 gaaacaaaag caggcgatat tccagtttgg gactttggct ttgctcaagt acagatgatt
     6121 gggtatcaag cgcaagttat tcctgccatt atggccggat tcttactagc ctatctcgaa
     6181 atttggttgc gtaaatttat tccaaatgcc atttcgatga ttttcgttcc attctttgct
     6241 ctcgtaccta ctgttcttgc agctcatgtt attcttggac caattggttg gaaaattggc
     6301 gacgcgattt cgaacgtcgt ttatgctggc ttgactggtg gactaagttg gttattcgcc
     6361 gcactatttg gcttcctata tgccccgctc gttgtcacgg gactgcatca tatgaccaac
     6421 gccatcgact tacaattaat gagtcaattt ggtggaacga atctctggcc gatgattgca
     6481 ctttctaaca tcgcccaagg gtccgctgtt ctagcaatta ttttcttaca tcgtggcaat
     6541 gaaaaagaag aacaagtttc aattccagca actatttctt gttaccttgg tgttacggaa
     6601 cctgcgatgt tcgggattaa tttaaaatac ttatatccat ttgtagctgc catgataggt
     6661 tcggcaattg cggctgtggt ttctgtatct agtggtgtta tggctaactc aattggtgtc
     6721 ggaggactac ctggaatctt gtccattaac cctaaatatt acgccgtttt tgcagtatgt
     6781 atgttaataa cgat
//
LOCUS       DABQVC010000154         6710 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.154,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000154 DABQVC010000000
VERSION     DABQVC010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6710
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.154"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..730)
                     /locus_tag="IBJ56_002223"
     CDS             complement(<1..730)
                     /locus_tag="IBJ56_002223"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HAM3418470.1"
                     /translation="MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDV
                     VEWRIDFFEDVKDLAKVEAALDEIRTILPETPILFTFRSAKEGGELAVGDEFYFELNE
                     TLASTGKIDLVDVELFNEETDVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTR
                     MEALGADLPKIAVMPKSAGDVLTLLDATNTVSEKANQPIITMSMAGTGVISRLAGEVF
                     GSAMTFGAAKKASAPGQIDVNELRH"
     gene            complement(796..1671)
                     /locus_tag="IBJ56_002224"
     CDS             complement(796..1671)
                     /locus_tag="IBJ56_002224"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HAM3418471.1"
                     /translation="MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYV
                     YLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVN
                     DDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIF
                     NRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFE
                     GETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIW
                     THKEMPVDYIKEILF"
     gene            complement(1771..3765)
                     /locus_tag="IBJ56_002225"
     CDS             complement(1771..3765)
                     /locus_tag="IBJ56_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAM3418472.1"
                     /translation="MTDYPSIFEPLTVKRMTIKNRVIMPPMGTNLAGLNGEFLEEHMN
                     YYEQRAKGGTGLITIENACVDFPYGTNGTTQLRIDNDQYIPGFYKLTERLHKHGTCVS
                     IQINHAGASAYPARLNGLQPVSASDIPSKKGGTVPRPLTVEEIYEIVNKYGDAARRAQ
                     QAGFDAVEIHGGHSYLLCQFLSPLYNKRTDEFGGSPENRARIVKLILEKVRAEVGPFF
                     PIVLRFSADEFTEGGNHLEDILELLDYCQEEADILNVSAAINDNLYLQIDQMNLEDGW
                     RSYLAKAVKDKFNKPTITSGNIRSPKAAEKILSEGYADLLAMGRGLIAEPNWVNKVAT
                     GQEDMLRKCISCNIGCADHRISKSKPIRCTVNPDIIHEDKYKETKVTRPTNVVVIGGG
                     TAGLEAACTAAEVGCNTTLIEASEQTGGLARAIANLPDKSRIADFPNYLANRAEKLTN
                     LKVITGTKADTALIDTFNPDVVVNATGSKPLLPPIKGLHDVIDKEGSKVHSIFGLISN
                     IDDFTEFSNKKVAVIGGGAVGLDVVEYFSERGSDVTIVEMMPLLGKDLDMITRLSMMD
                     IIEKNNVDVQTETALTEVAADHFKVKHDGVDAEIPFDYGFVCLGMRPERPLMEELAAY
                     GKEKQIEIVNIGDSAATRKILEGVREGRNILTTLEKIGSL"
     gene            3963..4856
                     /locus_tag="IBJ56_002226"
     CDS             3963..4856
                     /locus_tag="IBJ56_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3418473.1"
                     /translation="MNLRQLYYFKKLAEKEHYTIAAAELSITQPSLSHSIAELERELG
                     VYLFEKQGRNIRLTKYGRFYLTYVEKSLAELEKGEKLLHELTSPSHGNIDLGFIYTMG
                     AHTVPELVQNFTKVESHKDITFSFFQGATKSIIPDLKNEKFDLAICSYVENEPDIEFL
                     PLTKQELVVVVAENHPLAKHDSIDLKDTADYSYIFFSDTSGLRPLIDSLFAEINIQPK
                     IGCYVEEDTAMVGLVSVDYGISIMPKISSLAHYNVKVLSINEPKHDRFIYLASLKNHY
                     ISPASKAFKDFALRYGKKHFL"
     gene            complement(4893..5621)
                     /locus_tag="IBJ56_002227"
     CDS             complement(4893..5621)
                     /locus_tag="IBJ56_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HAM3418474.1"
                     /translation="MTEEFVNKEDALKNYNAKEFRTPDGYTSDMILTTVKELNGKPTL
                     HILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESADQAAARELEEETSLTGIPLIPF
                     GVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAADIGLFSMTEALELPLAFDHL
                     DMLKKAYSAITEEFLLTTAIRDFLPETFSAELLYQTLDGCTKPGILPDEVEFMENIEY
                     LPYLEKVGELYRFNADAEAGSIYF"
     gene            complement(5713..5883)
                     /gene="rpmF"
                     /locus_tag="IBJ56_002228"
     CDS             complement(5713..5883)
                     /gene="rpmF"
                     /locus_tag="IBJ56_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HAM3418475.1"
                     /translation="MAVPARRTSKAKKNKRRTHKGLTTPGLSRDSETGEYRMSHRISP
                     DGTYKGRTILEK"
     gene            complement(5948..6523)
                     /locus_tag="IBJ56_002229"
     CDS             complement(5948..6523)
                     /locus_tag="IBJ56_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HAM3418476.1"
                     /translation="MIEKTIKERRSIKKANDAPISRETVNTILEQAAYAPFHSKVEPW
                     NVYVLHTLAEKERYIEKIIEFNEREQGVSFSEAEIADLKAGYAKKIITPPYLLIVTTN
                     IIGHGKKDFESIGATSAFIQNIQLLGWEAGIGMIWRSNRFIFDAKFAEDLGIPSEQKI
                     VGTLHLTSLAEVPEAKPRRPLNEWVKNLADL"
BASE COUNT         1816 a         1475 c         1212 g         2207 t
ORIGIN      
        1 cgtgacgtaa ctcattaaca tcaatttgcc caggagccga tgcttttttc gcagcgccaa
       61 atgtcattgc ggagccaaat acttcgccag caagacggct gatgacacca gttcccgcca
      121 tcgacatcgt aatgattggt tgattagctt tttcagatac agtattcgtt gcatctagta
      181 aagttagtac gtctccagca gattttggca tgacggcgat tttcggaagg tccgcgccaa
      241 gtgcttccat gcgagttaag cgagaaacga tttcttcctt cgcaggtgtt ttatcaaaat
      301 catgattcga cataactact tttacattgt ttttgtgggc tgtttcgatt aaacgtaaaa
      361 catccgtttc ttcattgaaa agttccacgt caactaaatc aattttgcca gtgctagcta
      421 gtgtttcatt taattcaaaa taaaattcgt caccgacagc taactcgccg ccctcttttg
      481 cactgcggaa agtgaataaa atcggtgttt ctggtaaaat tgtgcgaatt tcatctagcg
      541 cagcttccac tttagctaaa tctttgacgt cttcaaaaaa gtcaatgcgc cattcgacaa
      601 cgtccaaatc gattgtttgt aacatttctg cttcttcttt aagcgcagca accgttttac
      661 cgaccattgg tacacaaatt tttggcgcac cttcaccaaa cgtaacattc tttacgacta
      721 ctttattcat gtataattct cctcattcga tattatgtct taagattagc gataaccttg
      781 ttcttttgca agtttttaaa ataggatttc tttaatgtaa tcaactggca tttctttgtg
      841 tgtccaaatt tcgaaagctt tcgcaccttg ccaaagcatc atgcctaagc cgttaagtgt
      901 ttgacagcct tgttcttcag cgatttcaag caatctagtt ttagttggtt tgtagacaac
      961 atccgaaacg attaattctg gacgaagcat atcggcactt ggtaaaagcg tttcgccttc
     1021 gaaaggtttc atcccaacgc cagtcgcgtt cgtgaaaata acactttctg cgatttcttt
     1081 acgtaattgt tcgtggtctt cgatatcaaa taattgtgct ttacaatctg ttttcgaatt
     1141 gattttttct actgtttttt ctgcattcgc gtaaaaatcg tcttttctgt tgaaaataga
     1201 aatttctttt acgccgtcaa gagcagcttg gatacaaata gctgttgccg caccaccagc
     1261 gccgcaaatc gtcatttttt tgccgataat atcatgtcca gcttctttta atgcacgcat
     1321 ataaccagtg ccgtctgtaa tgtgtccagt taacacgccg tcatcattaa caactgtatt
     1381 tactgcccct acaagttcag ctgctggaga aagtttatct aaatatttat ggatatttgt
     1441 tttatttggc atggaaacgt tccagccgcg taagttcatt gcgcggaatc cttgtacaac
     1501 atctttcagt tctttgtctc caacttcaaa agcaaggtat acataatcaa gcccgagttt
     1561 tgcaaaagct tcattatgca ttgttggtga taaactgtgt ctgattggag tggcgattaa
     1621 accgattaat tctgtgtgtc ctgtaattct ttctgtgatt ttgtttgtca taataacatc
     1681 gttcctttcc aaattaaggt ttatttgtga aaatgtgaac ttatataaag agcgaatgtg
     1741 gcaagacgga ctccgccttg ccagttcgga ttacaaagag ccaatttttt ctaatgtagt
     1801 taaaatattt cttccttcgc gaacgccttc caagattttt cttgtcgcag cgctgtcgcc
     1861 aatatttacg atttcaattt gtttttcttt tccgtatgcc gcaagttctt ccataagtgg
     1921 gcgttctggt cgcattccta ggcagacaaa gccgtaatca aatggaatct cggcgtctac
     1981 tccgtcgtgc ttcactttga aatgatccgc tgctacttcg gttaatgcag tttctgtttg
     2041 cacatcaaca ttattcttct cgataatgtc catcatcgaa agacgtgtaa tcatatctaa
     2101 gtcttttcca agaagtggca tcatttctac aattgtaaca tccgagccgc gttctgagaa
     2161 gtactcgacc acatcaagtc caactgcacc accgccgata actgcaactt ttttgttact
     2221 aaattcggta aagtcatcga tatttgaaat aagtccaaaa atcgaatgaa ccttactgcc
     2281 ttctttgtca atcacgtcat gcaaaccttt aatcggtgga agtaatggtt tggatcctgt
     2341 ggcattgact accacatcag gattaaatgt atcaataagc gcagtatcag ctttagtgcc
     2401 tgtaataact tttaaattgg ttaatttttc tgctcggttc gctaaataat tagggaaatc
     2461 ggcaattcta cttttgtctg gaaggttggc aatggcacgc gccaagccac cagtttgttc
     2521 actcgcttca attagcgttg tgttacagcc aacttcggcc gccgtacaag ctgcttcaag
     2581 ccctgctgtt ccgccgccaa ttacgacaac attggtcgga cgagtcactt ttgtttcttt
     2641 gtatttatct tcatgaataa tatcaggatt caccgtacaa cggattggct tcgacttgga
     2701 aattcggtga tccgcgcaac cgatattaca agaaatacat tttcgaagca tgtcttcttg
     2761 gccagttgcc actttgttca cccagttagg ctcagcgatt aagccacgtc ccatcgcaag
     2821 caagtccgca tatccttctg acaaaatttt ctctgccgct tttggactgc gaatgttacc
     2881 ggaagtaatc gttggtttgt taaatttatc tttcaccgct tttgcaaggt agcttctcca
     2941 gccatcttcc aagttcattt ggtcaatttg caagtatagg ttgtcattta ttgccgctga
     3001 tacattcaaa atatccgctt cttcttggca ataatctagc agttccaaaa tatcttctaa
     3061 gtggttgccg ccttctgtaa attcatctgc actaaaacga agtacgattg ggaaaaatgg
     3121 accaacttcc gcgcggactt tttccaaaat tagtttgacg atacgggcgc gattttcagg
     3181 cgagccacca aattcatccg tacgtttgtt ataaagtggc gataagaatt ggcatagtaa
     3241 gtacgagtgt ccgccgtgga tttcgactgc atcaaaccca gcttgttggg cacgtctagc
     3301 tgcatcacca tatttattga cgatttcata aatttcttct accgtaagcg ggcgcggtac
     3361 agtaccacct tttttagatg gaatatctga cgcggaaact ggttgaagtc cattcaaacg
     3421 tgctggataa gctgatgcac cagcgtggtt gatttggatg gatacacaag ttccatgttt
     3481 atgaagacgt tctgttaatt tgtaaaatcc agggatgtat tggtcattat cgattcgaag
     3541 ttgcgttgtt ccgtttgtcc cataaggaaa atctacacaa gcgttttcaa tagtgattag
     3601 acctgttcca ccttttgcgc gttgttcgta gtaattcata tgttcttcta aaaattcgcc
     3661 atttaatcca gctaggtttg tccccattgg tggcattatc acacggtttt taatggtcat
     3721 tctttttaca gttaatggtt caaaaatact cggataatct gtcataataa gcctcctgcg
     3781 actataatct cagcaaatga tttgttacat tattcacgtt caataatgca caatcttatt
     3841 tctctttcat tataagtcag gaataattat taatctaatg tatatttttc gatttatcca
     3901 tagatttttt ctatacaatc gcttacaata gagttatcaa ggcattccga ggaggtagtt
     3961 tcatgaattt gcgtcaatta tactatttta aaaaactagc tgaaaaagag cattacacga
     4021 tcgcagccgc cgaactctcc attacccagc ctagcttaag ccattctatc gcagaacttg
     4081 agcgagaact tggtgtctat ttatttgaaa aacaaggccg caatattcgt ttaactaaat
     4141 acggtcgctt ttatttaact tatgtggaaa aatccctcgc cgaactagaa aaaggtgaaa
     4201 aacttttaca cgaattaacg agcccatcgc acggaaatat tgatttaggg tttatttaca
     4261 ccatgggcgc ccatacggtt ccagagctcg tccagaattt caccaaagtc gaaagccata
     4321 aagacatcac attttccttt ttccaaggtg ccactaaatc aattatccct gatttaaaaa
     4381 atgaaaaatt cgacctagcg atttgctcct acgtcgaaaa tgaacctgat attgagtttt
     4441 taccattaac aaaacaagag ttagttgttg tcgttgccga aaaccaccca cttgccaaac
     4501 atgattcgat tgatttaaaa gacaccgcag attattcgta tattttcttt tctgacacca
     4561 gtgggctgag accgcttatt gattctcttt ttgcggaaat aaatattcaa cctaaaatcg
     4621 gctgttatgt agaggaggat accgcaatgg ttgggcttgt gagtgttgat tacggtattt
     4681 ctatcatgcc aaaaatctcc tcattagcac actacaatgt caaagtatta tccatcaacg
     4741 aaccaaaaca cgatcgtttt atctatctag caagtttgaa aaaccactac atttcgcctg
     4801 cttccaaggc ttttaaagat ttcgcattac gttatggtaa aaagcatttc ctataaaaaa
     4861 aggagccaac caaatcggtg gctccttttc tattaaaaat aaatacttcc tgcttcagca
     4921 tccgcattaa atcggtataa ctcaccaact ttttctaaat acggtaaata ctcgatattc
     4981 tccataaatt ctacttcatc cggcaaaata cctggcttcg tgcaaccatc taacgtttgg
     5041 taaagtagtt cggctgagaa agtttctggc aagaaatcac gaattgctgt tgtcagtaaa
     5101 aactcttccg taatcgcact atacgctttt ttaagcatat ctaaatggtc aaaagcaagt
     5161 ggcagttcca aagcttctgt cattgagaaa aggccgatat ccgccgcgtc atccccagcc
     5221 gcgcgtttct ctaaagcttc tggtggcaca atcgcataaa atgcccgcga aataatccaa
     5281 ccgcgcggat cacgacccgg tttatcaaat accccaaacg gaatcaacgg aataccagtc
     5341 aaacttgttt cttcttctag ttcacgcgcg gcagcttggt ccgcagattc attttcatcg
     5401 acaaatccgc ccggaaccgc ccattttccg ccttccatat ttggttttcc ttctgcgttt
     5461 gtaaggcttc gtttaattaa taaaatatgt aatgttggtt tcccgttcaa ctcttttact
     5521 gtagttaaaa tcatatcgct cgtatagcca tctggtgtac gaaactcttt tgcattataa
     5581 tttttcagcg catcttcttt gttcacaaat tcttctgtca tgtcaaaatc agactccttt
     5641 ttgtgtattt agctctttcc attatagtat cacaaaaaaa agaatttgtt ccaatcactg
     5701 gaacaaatcc tcttattttt cgagaattgt gcgaccttta taagtgccgt ctggtgagat
     5761 gcggtgtgac atacggtatt cgcctgtttc actatcgcga ctcaaacctg gtgttgttaa
     5821 gcctttatgc gtacggcgct tgtttttctt cgctttggac gtacgtctag ctggaactgc
     5881 catattgctc gcctccttat ttcttacact tgtatcattg taacgctaat cacacgaaac
     5941 atcaatctta caaatcggct aaattcttca cccattcatt caaaggacga cgcggttttg
     6001 cttctggcac ttccgctaag ctagttaaat gcaaggttcc aacaattttt tgctcagaag
     6061 ggatacctaa atcttccgca aacttcgcat caaaaataaa tctattcgac cgccaaatca
     6121 tcccaattcc cgcttcccag ccaagtaatt ggatattttg gataaatgca ctagttgccc
     6181 cgattgattc gaaatccttt ttcccgtgac cgataatatt cgtcgtcaca atgagtaagt
     6241 atggcggcgt aataattttc ttcgcatagc ctgcttttaa atccgcaatc tctgcttcag
     6301 aaaaactaac cccttgttcg cgctcattaa attcgatgat tttctcgatg tatcgctctt
     6361 tttcagcaag tgtatgcagc acgtatacat tccacggctc tactttgcta tgaaaaggcg
     6421 cataggcagc ttgctctaaa atggtgttca ccgtttctct tgaaattggc gcgtcgttcg
     6481 ctttcttaat gctacgacgt tccttaattg ttttttcaat catgtttaat tcccccttaa
     6541 atgataaacg ttatcattta gagaattata gcatgattgg tttgtgggtt gctagtaaag
     6601 gggcttttgg ggtttagcat atgtgtttat tttgttcaga tgattctcta tagaccaaaa
     6661 cctgttttct aattctatgg ctgattcata atatgttttt tcaaataaaa
//
LOCUS       DABQVC010000155         6696 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.155,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000155 DABQVC010000000
VERSION     DABQVC010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6696
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.155"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            139..483
                     /locus_tag="IBJ56_002230"
     CDS             139..483
                     /locus_tag="IBJ56_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3899 domain-containing protein"
                     /protein_id="HAM3418477.1"
                     /translation="MFLRITIYTLIQEAIIFGILLFGKNQSVSLSNYVDISFMVALIA
                     LLIGLFVYIMRSGFLDRVHNGFRSISRKIKREEENEFSDMPLSELVGLRYAGILFSSL
                     LVMLSSILCMFL"
     gene            818..1813
                     /gene="trpS"
                     /locus_tag="IBJ56_002231"
     CDS             818..1813
                     /gene="trpS"
                     /locus_tag="IBJ56_002231"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HAM3418478.1"
                     /translation="MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEH
                     AITVPQDRLKLREQTRSLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGE
                     LERMTQFKDKSDGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAE
                     RFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKI
                     KSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETISTIEEKYVGKGYGDFKTDLAEL
                     VVAELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRR"
     gene            complement(1869..2285)
                     /locus_tag="IBJ56_002232"
     CDS             complement(1869..2285)
                     /locus_tag="IBJ56_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HAM3418479.1"
                     /translation="MKKLYETTVINTGGRSGEVHSPDNVFYFDISAPTELGGDGGGGT
                     NPEQLFAAGYGACFNSALELVLGKAGIEAKSTVTATVSLYSDPEDNGFKIGVVLEGTI
                     EGQDKEKTEALLKKAHEVCPYSKATRGNIDVEIKVG"
     gene            complement(2269..2721)
                     /locus_tag="IBJ56_002233"
     CDS             complement(2269..2721)
                     /locus_tag="IBJ56_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3418480.1"
                     /translation="MDTNTRILEEQLCFSVYNASKQFTKLYREALEPFQLTYPQYIAL
                     LVLWEVEEQTVSELGKRLALDSGTLTPMLKRMEHLGYVTRSRHPEDERRVYIRLTEKA
                     IKIQPDVLKSVDNCLQLLDFKELDYTQLLTKIQSLTKQLGGIENEKII"
     gene            complement(2843..4084)
                     /gene="fabF"
                     /locus_tag="IBJ56_002234"
     CDS             complement(2843..4084)
                     /gene="fabF"
                     /locus_tag="IBJ56_002234"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HAM3418481.1"
                     /translation="MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPD
                     DFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVG
                     VWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTT
                     VTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETA
                     CRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNG
                     EGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGDHAKKLAISST
                     KSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVV
                     ISNSFGFGGHNATLVFKRIED"
     gene            complement(4287..5225)
                     /locus_tag="IBJ56_002235"
     CDS             complement(4287..5225)
                     /locus_tag="IBJ56_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HAM3418482.1"
                     /translation="MNAGILGVGKYVPEKIVTNFDLEKIMDTSDEWIRTRTGIEERRI
                     ARDDEYTHDLAYEAAKVAIKNAGLTPDDIDLFIVATVTQEATFPSVANIIQDRLGAKN
                     AAGMDVEAACAGFTFGVVTAAQFIKTGAYKNIVVVGADKLSKITNWDDRTTAVLFGDG
                     AGAVVMGPVSDDHGLLSFDLGSDGSGGKYLNLDENKKIYMNGREVFRFAVRQMGEASL
                     RVLERAGLEKEDLDLLIPHQANIRIMEASRERLNLPEEKLMKTVHKYGNTSSSSIALA
                     LVDAVEEGRIKDNDNVLLVGFGGGLTWGALIIRWGK"
     gene            complement(5345..6472)
                     /locus_tag="IBJ56_002236"
     CDS             complement(5345..6472)
                     /locus_tag="IBJ56_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3418483.1"
                     /translation="MDRKCQLIMKKKFTQILLASVIVSSTLVPFVQAEAAGTSQTSVS
                     HAGMTLSQQQFIQSIANDAQDLQKEEKILTSVTLAQAILESNWGKSGLSTSANNLFGI
                     KGSYEGNSVSMGTQEFSSGKAYRTQADFRKYPDKKASLVDHAQLFVNGVSGNANLYSA
                     VIGETNYKEAAYAIQDAGYATDPAYAEKLISTIENYNLDQYDQIYDTVTSTENQLAYA
                     EIKDSSNETIWTKPYNTEGAEKTGSVKDYKNKSLRISQKAVTEKGTWYQLLNQGETIG
                     WVNSNAVEVFYTPKNETNVKLDKYITDSDQKIYAYPVEDNSKVVTNLNDYLGKELDID
                     RRADVKNEYWYRIKSDDGKVIGWSKADGFAENNPNKALEVK"
BASE COUNT         1955 a         1300 c         1147 g         2294 t
ORIGIN      
        1 tctgtaaaga cagttggaag gttattttac taaaaacgga caaatttcta acattaaatg
       61 atagcttcct tctatcatat agtctttcta tccaaattgt gatagagtga attatgaatt
      121 ttaattagag gtgaagaaat gtttttacga attactattt atacacttat tcaagaagct
      181 attatttttg gtattttact tttcggaaaa aatcagagtg ttagtttaag caactatgtg
      241 gatatttcct ttatggtagc acttatcgcg ctcctaattg gattgtttgt ttatattatg
      301 agaagtgggt ttttagaccg cgttcataat ggttttcgaa gtatttctcg caaaattaaa
      361 cgagaagaag aaaatgagtt ttcagatatg cctttatctg aattagtcgg tcttcgatac
      421 gctgggattt tgtttagttc cctacttgtt atgctatcta gtattctatg tatgtttttg
      481 taattgacaa gccgttttgt aaactgatag aataaaagta atataactga tgcgttaata
      541 ggaagattag tacattttgt tgctttataa tagagagtct gtggttggtg gaaacagata
      601 aagcgcaaaa tcgaatggac ttctaaggac tgtttgtgaa agccagtagc gaacagcggc
      661 taaagaccgt tacttcttta atagaaattt tctattgcta agagcctttt taggtactta
      721 gggtggcacc gcggataacc gttcgtccct aacatttata tgttgggatg gacggttttt
      781 tattttcgct atcagtgaaa aaattggagg aataaacatg aaaaaagtaa tattttccgg
      841 aattcaacct agtggacaat taactttagg aaattatatt ggagctttga aacagtttgg
      901 tcagtttcaa gatgaatatg aatgttttta ttgtatcgtt gacgaacacg ctattacggt
      961 tccacaagat agattaaagc ttcgtgagca aacaagaagt ttagcagctc tttatttagc
     1021 agttggactg gatcctgaaa aagcgactct ttttattcaa tctgaagttg cagcacatgc
     1081 tcaagcagca tggattttac aatgtaacgt atatattggc gaattagaac gtatgacgca
     1141 gttcaaagat aaatcagatg ggaaagcagg tgtcagtgct ggccttttaa cttacccacc
     1201 attgatggca gctgatattt tactttatca aaccgattta gttcctgttg gcgaggatca
     1261 gaagcaacat atcgaattaa ctcgcgactt agcagaacga tttaataaaa agcacgcaga
     1321 tattttcacg atgccagaag tattcattcc taaacaaggc gcacgagtaa tgtccttaca
     1381 agatccaacg aaaaaaatga gtaaatctga tgccaatttg aaaaatgcta tctttttact
     1441 tgacccacca gctaccatta gaaaaaaaat caaaagcgct gtaaccgatt ctagtggtat
     1501 tattgaatat aataaagaag aaaaaccagg tgtgtctaac ttactaacta tctattctgt
     1561 tatcactggc gaaacaattt ctactataga agaaaaatat gttggaaaag gttatggcga
     1621 ttttaaaaca gatttagctg aattagttgt tgctgaactt gagccaattc aagaaaggta
     1681 ctatgcttat ctaaaatctg aggagctgga cactatatta gacgcaggag cagaaaaagc
     1741 tgctcgcgtg gctaataaaa cattgaagaa aatggaaaat ggcgtggggc ttggccgcaa
     1801 acgcagaaga taatataaaa aagccaatga ctagttgatc taagtcattg gcttttttta
     1861 tttaaacatt aacctacttt aatttccaca tcgatgttac cacgagttgc tttagaatat
     1921 ggacaaactt catgtgcttt tttaagtagt gcttctgttt tttctttatc ttgtccttcg
     1981 atagttcctt ctaatacgac accaatttta aaaccgttgt cttctggatc actatataag
     2041 ctgacagttg ctgttactgt gctctttgct tcaatcccag cttttcctag aactaattct
     2101 aacgcgctat tgaaacaagc tccgtatcca gccgcaaata gttgttctgg gtttgttcca
     2161 ccaccgccgt ctccaccaag ttctgttggc gcagaaatat caaagtaaaa tacgttgtct
     2221 ggcgaatgaa cttcaccact tcttccacct gtattaatga ctgttgtttc atataatttt
     2281 ttcattttct attcctccta attgtttcgt taacgattgt attttggtaa gtaattgtgt
     2341 gtagtctaat tctttgaaat caagtaattg aaggcagttg tccacgcttt ttaatacgtc
     2401 aggttgtatt tttattgctt tttctgttaa gcgaatataa acgcggcgct cgtcttccgg
     2461 atgacgactc cgtgtaacat atcctaaatg ctccattcgt tttaacatag gtgttaaagt
     2521 tccactatct aaagccaacc tcttcccaag ttctgataca gtttgttctt caacttccca
     2581 tagaacaagc aaagcaatat attgtggata ggttaattga aacggctcta aagcttcacg
     2641 ataaagttta gtaaattgtt tggatgcatt gtaaacagaa aaacatagtt gctcttctaa
     2701 tatgcgtgta ttcgtgtcca acatgttctc ctccttttaa gttgtgtaca atttaattgt
     2761 aaccaatcat aataatgaaa gctagttttt tgctcaaaaa aagccttacc tcatttttag
     2821 aggtaaggct tttgattata ttttagtctt ctattctttt aaatactaaa gtcgcattgt
     2881 gaccaccaaa gccaaaagag ttagaaatta ctacatttac atttgcctca cgtgcttcat
     2941 ttggaacata atccaagtca caaacttcat cttggttttt caaatgaatc gttggtgcaa
     3001 taatattatc acgaatagtc aatagggcga aaatagcttc tattccgcca gacgcaccta
     3061 gagtatgtcc agtcattgac ttagtagaac taatcgctaa ttttttcgca tgatctccaa
     3121 agacagtttt aatagcttgt gtttcgtatt catcattgta cggtgtactt gttccgtggg
     3181 cattaatata atctacttta tcaggggtaa ggccagcatc atcaatcgcc attttcattg
     3241 cgcgcgcagc accttcaccg tttggagctg gagcagtaat gtggtaagca tctcctgttg
     3301 caccgtaacc aacgatttca gcgtaaattt ttgccccacg tgcttttgca tgttcgtatt
     3361 cttctaaaat aacgatacct gcgccttcac caataataaa accatcacga tctttatcaa
     3421 acggacggca tgcagtttct ggatctggat ttaatgacaa agctttatta gcagtaaaac
     3481 cagcaagtga cattttagta atcggcgctt ctgctccacc agtaatcatt gcatcagcgt
     3541 ctccacgctc aataacttta aacgcgtcgc cgattgagtt tgttgcagtt gcacaagctg
     3601 taactgttgt agaattaatg cctttagcac caaaacgaat agaaacctgg cctgaaccca
     3661 tatctggaat catcataggt acgaaaaacg ggctaactcg gcgatgaccg cgatttaaga
     3721 aaatttcata ttgtgtttcg aaagtttcca ttccaccaat tcctgaacca atccaaacac
     3781 caactcggtt tgcattggaa tcatcaataa ctaaaccaga gtcttgcacg gccatttcag
     3841 cacttgcaat tgcataatgc gtaaaacggt ccattttacg agcttctttt ttctctagat
     3901 atttttctac atcaaaatct tttaattctg ctgcaatttt aaccggaaag tcatccggat
     3961 taagtcttgt catttttgca acaccattaa cacctttttt tgcgttttcc caagaagttt
     4021 ccgcatcatt tccaataggt gtaacagctc caataccagt aacaactact cttctcttat
     4081 ccatttactc atctccttat tttgcgattc ataaaaaaca acttctgtcc aatgacagca
     4141 gctagtataa agttaaggct ttatttaaaa ttaataatag tgcacaaaca aataaaccaa
     4201 aagcctgttc cattataaca taaataaagg aaagttgtcc taactaaaat aatcgttagg
     4261 gcaactttcc tttttaaatt tactgcttac ttaccccaac gaatgattag ggcgccccat
     4321 gttagtccgc cgccaaaacc tacgagcaga acgttatcat tatctttaat acgtccttct
     4381 tccactgcat caacgagcgc aagtgcgatt gaagaggacg aagtattacc atatttgtgt
     4441 actgttttca tcagtttttc ttctggtaaa ttcaaacgct cacgagaagc ttccataata
     4501 cgaatatttg cttggtgagg aattagtaag tccaagtctt ctttctcaag accagcacgt
     4561 tcaagtactc gtagtgaagc ttctcccatt tggcgaactg caaagcggaa tacttcacga
     4621 ccgttcatat aaatcttttt attttcatct aaattcaagt atttaccacc tgatccatct
     4681 gaacctaagt caaatgaaag taaaccatga tcatcagaaa ctggtcccat aactacagca
     4741 cctgctccat caccgaataa tactgctgtt gtgcgatcat cccagttagt gattttagat
     4801 aatttatccg caccgacaac cacgatattt ttatatgcac ctgttttaat gaattgtgct
     4861 gcagtcacta ctccaaaagt gaaaccagca caagctgcct caacgtccat accagcagcg
     4921 ttttttgctc ctaagcggtc ttggataata ttagcaactg aaggaaatgt cgcttcttgt
     4981 gtaacagttg caacgataaa taagtcaata tcatctggtg taagaccagc attcttaatg
     5041 gctacctttg ctgcttcata tgctaaatca tgcgtatatt cgtcatcacg agcaattctt
     5101 ctttcctcaa taccagttcg agttctaatc cactcatcag atgtatccat aattttttct
     5161 aaatcaaagt tagttactat tttttcaggt acgtatttac ctactcctaa aattcctgcg
     5221 ttcatgtgtt ctcctccata tcaaactaca tcagggtgaa aataaatttt ctcctggtta
     5281 tttttatgac ctggtgctaa ttttaacaga gaactatcaa ttaagcaatt ggattgctac
     5341 ttttttattt tacttctaac gctttattag gattgttttc agcaaaaccg tctgcttttg
     5401 accagccaat tactttccca tcgtctgact taatacggta ccaatattca tttttcacat
     5461 ctgcacgacg gtcaatatct aattctttcc ctagataatc attaagattt gtgactactt
     5521 ttgaattatc ttctactggg taagcataga ttttttgatc cgaatcggtg atatatttat
     5581 ctagtttcac atttgtttca tttttcgggg tataaaaaac ttctacagca ttactgttta
     5641 cccatccaat agtttcgcct tgatttagaa gctgatacca tgttcctttt tctgtgacag
     5701 ctttttgaga aattcgaagg cttttatttt tgtaatcttt gacactacct gttttttctg
     5761 caccctctgt attatatggt tttgtccaaa ttgtttcatt gctagaatct ttaatttccg
     5821 catatgctaa ttggttttct gttgatgtca ctgtatcgta aatttggtca tattgatcca
     5881 aattgtaatt ttcaatagtt gaaatgagtt tttctgcgta tgctgggtca gttgcataac
     5941 ctgcatcttg aattgcgtat gctgcttcct tatagtttgt ttctccgatg accgctgagt
     6001 aaagatttgc attaccagat actccgttaa caaaaagttg ggcatgatcg actaaagatg
     6061 cttttttgtc tggatacttt ctgaaatcag cttgtgtgcg gtaggctttc ccgctgctaa
     6121 attcttgcgt tcccattgaa acggaatttc cttcatagct tcctttaatt ccaaacaggt
     6181 tgttagctga agttgataag ccacttttac cccaattgga ttctagaata gcttgtgcta
     6241 aagtgacact cgtcaatatt ttttcttctt tttgtagatc ttgtgcatca tttgctatgg
     6301 attgtataaa ttgttgttgt gataaagtca ttcctgcgtg acttactgaa gtttggctcg
     6361 ttcctgctgc ctccgcttga acaaaaggta ctagtgtaga acttacgatg acgcttgcta
     6421 gtaaaatctg cgtgaatttc tttttcatta tcagttggca cttcctatcc aaattagtta
     6481 gttcccccaa tttaaatggc tctgtctctg ttaaccttct tcattctagc attttcattc
     6541 tgagagccta ctaatttttt gatgaaaaat ttatcataaa gtaagcaaaa tggctatttt
     6601 agagggttca cacataccta tttacatttg acaatattat gtcgttacac atttacccct
     6661 taatactact attcttcgtt gaagtttcat ttcctt
//
LOCUS       DABQVC010000156         6691 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.156,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000156 DABQVC010000000
VERSION     DABQVC010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6691
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.156"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..295
                     /locus_tag="IBJ56_002237"
     CDS             <1..295
                     /locus_tag="IBJ56_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HAM3418484.1"
                     /translation="AAVGIAMGEGTDIAMETADVVLMKNDLEKIPYAYNLSERLHWIT
                     WQNICFAIAVILALITANVFQLINLPFGVVGHEGSTILVILNGLRLLRSNRKK"
     gene            391..1119
                     /locus_tag="IBJ56_002238"
     CDS             391..1119
                     /locus_tag="IBJ56_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418485.1"
                     /translation="MKKINWTQWIALFVFASMGISVVFTIYEIFTAPIKQPATGPHVT
                     LRGDYIFLLFEIILGIFILLLPSIIARRFKFEIPGLVYILFIVFLYGSIYLGTVQKFY
                     STVPHWDKILHTFSGAMLGAIGFSFVSLLNANNKVVMKLKPGFIAVFAFCFAVTMGAF
                     WEVYEYTFDGIMNLNMQRYNLSNGTPLTGRAALEDTMTDIIVDIIGALFIVIVGYFAL
                     KKGRPWMERFEFKRKNWKKEPKKK"
     gene            1259..1909
                     /locus_tag="IBJ56_002239"
     CDS             1259..1909
                     /locus_tag="IBJ56_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TalA family protein"
                     /protein_id="HAM3418486.1"
                     /translation="MFLDTGNLEEIKKALQFPFFEGVTTNPTILLKENKPRNTHIANI
                     PAKVVFVQAAGLTEEEIWEDVLRIQAIEPAEGTVIGLKIPAHEAGIKVIAKVRANFPN
                     EIILATAIFSSEQGYIAALSGADYLAPYYNRMEVSGLDAAKTIEELRYVLDLQGLEDV
                     KIMGASFKNSRQIMQALASGADTVTIGYDLFLQMMNKPLALESIEKFNEHQAALPK"
     gene            complement(1952..3772)
                     /locus_tag="IBJ56_002240"
     CDS             complement(1952..3772)
                     /locus_tag="IBJ56_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HAM3418487.1"
                     /translation="MILFYFLLIIGKFTFAYFQIFKDPNFLALGMDLLFIVLLLGLIH
                     LFAPVRSHIYWYAGMSLFIGILMLVCVLYARFYNEVPTYHSFSLIGEVGVVKNSATSL
                     LSGTDWLYILDIVLLPFILYFHIKKGHEFPSFRITSRVYGVSFISTLLVLSGFTYFMM
                     QQNIISDSKRAKRMGIFTFNISTALTGADHVKAADITAKNVNDIKGVSVKSNPDYFGA
                     AKGKNLIIVQLESFQRNLTDVKINGQSITPTLDSLQNETMYSNQFFQTVSKSNTADAE
                     WSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYKTATFHTNDASFYNRDEFYPAV
                     GFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEEQYKNNQKFYAQLISVSSHMPFD
                     IPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQKLKDSGIWDDSVVVFYGDHH
                     IIKTDQLPEEQKKYVNRSTELKADPADDYRIPFFLHYPGMENPGEIKNVGGEIDIMPT
                     VMNLLGIKTGDQIMFGTDILNSSNNYVPERYTMPEGSYFTNSYMYQPDESFETGAATN
                     YDGTNKELSSDVKKRFDASRKLLQYSDSYVNNLPLRDEDK"
     gene            4007..5398
                     /locus_tag="IBJ56_002241"
     CDS             4007..5398
                     /locus_tag="IBJ56_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAM3418488.1"
                     /translation="MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTG
                     IFILPGTVAAKNAGPAIIFSFVIAAIVCAIAAMCYSEFASSVPVAGSAYTYGYVVFGE
                     LIGWLLGWALILEYGLAVASVASGWSSYLNALLSGFHISIPEAISGPFNPEVGTFINL
                     PAIIIVLVIAFLLTLGIKESTRVNTIMVAIKVGVILLFLVVGVFYVKPDNWQPFMPFG
                     ISGVMNGAALVFFAYLGFDAVSSAAEEVKDPQRTMPIGIIGSLLICTVLYVAVSAVLT
                     GMVPYTDLNVTDPVAYALQVINQDWVAGIVSLGAVVGMITVILVMSYGATRLIFAMGR
                     DGLLPKVLAEINQKYQTPVKNTWIFAVIVAIISGLVPLDRLAELVNIGTLLAFMMVSI
                     GIIFLRKNKDIQARGFKVPFYPVLPIVSFLLCAFLISRLSVHTWILCGIWFVIGLIVY
                     FAYGRKHSELLKK"
     gene            5488..6327
                     /locus_tag="IBJ56_002242"
     CDS             5488..6327
                     /locus_tag="IBJ56_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAM3418489.1"
                     /translation="MAEISEELRLGEVVLNVGHLKEMAGFYQEVIGLKLLEENERMVR
                     LGVSGSDEALLVLKKIDNAVVPEVPRIGLFHTAFLLPTRESLADVLLHLAKSGYPIDG
                     AGDHAYSEALYLHDIEGNGIEIYADRPKAEWMRDGDGNLPMVTEQVDVDSLLQIATDE
                     PFTGMPNGTIIGHVHLQVADADKAEQFYKEVLGMNLTTAIPSARFFAAGDYHHHIGSN
                     VWAGRNLELLQENETGLAWFTIITPDKDAIITNLIEQGYDVKRLENTISVTDSNGIKI
                     HFK"
     gene            complement(6409..>6691)
                     /locus_tag="IBJ56_002243"
     CDS             complement(6409..>6691)
                     /locus_tag="IBJ56_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418490.1"
                     /translation="EFMSMIVTGIVLAAIISGLSFVVGKLSGLSWFWIAFCANSGFFI
                     IFITVQNSFPDNAAVALSYLNLGIGVVLIALTLFQSSNWLFKKTMQRKH"
BASE COUNT         2019 a         1092 c         1450 g         2130 t
ORIGIN      
        1 tgcggctgtt ggaattgcaa tgggcgaggg gacggacatt gcgatggaaa cagcggatgt
       61 tgttttaatg aaaaatgatt tggagaaaat cccatatgct tacaaccttt ctgaacggct
      121 tcactggatt acttggcaaa atatttgttt tgcgattgcg gtgattcttg ctttgataac
      181 agcgaatgtt ttccaactaa tcaatttgcc atttggcgtt gtgggacatg agggaagtac
      241 tattttagtt attctaaatg ggcttaggct ccttcgatct aatcgaaaaa agtgataaat
      301 ttgactgctt gtctattcct agtctaagat ggatgagcag tttctttttg cgaaaaaagg
      361 ggtattacat gatagattgg agatgagtgc atgaaaaaga tcaattggac acaatggata
      421 gcattatttg tttttgcgtc aatggggatt tctgttgttt ttactattta cgaaattttt
      481 acagcaccga tcaagcagcc agcaactggg ccgcatgtga cgttacgagg ggactatata
      541 tttttactat ttgaaattat attaggaatt tttattttgt tgctaccttc gattattgca
      601 cgacgcttca aatttgaaat acctggtctt gtgtatattt tgtttattgt atttctatac
      661 ggatccattt atcttggtac agttcaaaaa ttctattcaa ccgtgccaca ttgggataaa
      721 attttacata cttttagtgg ggcgatgctt ggagcaattg gcttttcgtt cgttagtttg
      781 ctaaatgcta ataacaaagt tgtcatgaaa cttaaaccgg gttttatcgc tgtattcgcg
      841 ttttgtttcg cggtgacaat gggggctttc tgggaagtgt atgagtatac ttttgatgga
      901 attatgaact taaatatgca acgttataat ctatctaatg gaacaccgct cactggccgc
      961 gctgcactgg aagatacgat gacagatatt attgtcgata ttattggcgc actatttatc
     1021 gtcatcgtcg gctattttgc actgaaaaaa gggcgaccat ggatggaacg ctttgaattc
     1081 aagcggaaaa attggaagaa agaaccgaag aaaaaatagc ggtaaaaaac acctcggcac
     1141 gtggaggtgt tttttgttgt acaaaatcgc caacaacttt gggtctcaga aacaattgac
     1201 tggctcgtgg aacttttcta cacttaaaat gagaagaaaa ctttgaagga gtgaggaaat
     1261 gtttttagat acggggaatt tagaggaaat aaagaaagcg cttcaatttc cgttttttga
     1321 aggtgtaacc actaatccga ctattttatt aaaggagaat aagccgagaa acacgcatat
     1381 agcgaatatt ccagccaaag ttgtgtttgt gcaagcggct gggttaacgg aagaggaaat
     1441 ctgggaagat gtccttcgaa ttcaagcaat tgagccggca gaaggtacgg taatcggctt
     1501 gaaaatccca gcccacgaag ccgggataaa agtaatcgca aaagttcgcg ctaattttcc
     1561 aaatgaaatt attttagcaa cagcaatttt ctcatcggaa caaggttata ttgcagcgct
     1621 ctctggggca gattatttag cgccatatta taatcgcatg gaagtaagcg gactagacgc
     1681 agcgaaaaca atagaagaac tacgatacgt gttagattta caaggacttg aagatgtgaa
     1741 aattatggga gcaagcttta aaaatagtcg tcaaattatg caagcactag ctagtggagc
     1801 tgatacggtt accatcggct atgatttgtt tttacaaatg atgaacaaac ctctagcgct
     1861 tgaaagtatt gaaaaattta atgaacatca agccgcttta ccaaaataag cgaaaaaaga
     1921 agtatccaga tttgctggat acttcttttg tttatttatc ttcgtctcgt aatggtaaat
     1981 tgtttacata gctatcagaa tactgtaaga gttttcggct agcgtcaaag cgtttcttta
     2041 catcactcga aagttctttg tttgttccat cataattcgt tgctgcgcca gtttcgaaac
     2101 tttcatctgg ttggtacatg taagaattgg tgaaataact tccttctggc attgtgtagc
     2161 gttcaggtac gtaattattt gatgaattga ggatatcggt tccaaacata atttggtcac
     2221 cagttttaat accaagtaaa ttcatgacag ttggcataat atcaatttcg ccaccaacat
     2281 ttttaatttc accagggttt tccatgccag gataatgtaa gaagaacgga atacggtaat
     2341 catcggctgg atccgctttt aactcagtag aacgattgac gtattttttt tgttcctcag
     2401 gtagttggtc ggttttgata atgtgatgat cgccgtagaa aacgacaaca gaatcatccc
     2461 aaatgccgct atcttttaat ttttgaatga attcaccaag ttgtttatcc gcataatgaa
     2521 ccgcttcgaa atagttacca agttctgtat cttttaaatc gctcggtaag tcgatttctt
     2581 gcttatcttt tggaatatca aatggcatat gactacttac actaattaat tgcgcataga
     2641 atttttggtt gtttttgtac tgctcttcta gaatcggaaa ggctttgtta taaagcactt
     2701 catcactagg agaaaagcca ataacgtcct catcgccaaa gaatttacga tcataaaact
     2761 tatcaaatcc tacagcagga taaaattcat cgcgattgta aaaactagca tcatttgtat
     2821 ggaaggtcgc tgttttataa tcatttttgc caagtaaacg aggcatagac gggattaccc
     2881 ggtcgccgta agtttgtgtg ttcgtgtaat atccacttgg gaaagtcgat gtataaacgg
     2941 accattctgc atcagccgta tttgacttag agacagtttg gaaaaattgg ttggaataca
     3001 tggtttcgtt ttgtaagcta tctaatgtag gcgtaatcga ctgaccgtta attttgacgt
     3061 ccgttaaatt acgctggaat gactcgagtt gaacgataat aagatttttt cctttagcag
     3121 caccgaagta atcgggattt gacttaaccg acacaccttt aatgtcattc acgttttttg
     3181 cagtaatatc tgcggcttta acatgatctg caccagtaag cgcggtactg atattaaatg
     3241 tgaaaattcc cattcgtttt gcgcgcttgg agtcactgat aatattttgt tgcatcataa
     3301 aataagtaaa accacttaaa acgagtagcg tactaataaa tgatacgcca taaacacggc
     3361 tagttatgcg gaatgaaggg aactcgtgtc cttttttgat atggaaataa aggataaatg
     3421 ggagtaaaac gatatctagg atgtacaacc agtctgttcc gcttagcagg cttgtagcac
     3481 tgtttttaac tacgccaacc tcgccgataa gagagaagct gtgatatgtt ggaacttcat
     3541 tataaaaccg ggcgtaaagt acacacacga gcattaaaat cccaataaat aaagacattc
     3601 ccgcatacca ataaatgtgc gagcgaaccg gtgcaaataa atgaattagt ccaagaagta
     3661 agacgataaa cagcaggtcc attccaagtg ccaagaagtt aggatcttta aaaatctgga
     3721 aataggcgaa agtgaactta ccaataatta ataaaaaata aaataaaatc aactgaattc
     3781 ctctttctag catgctttgt gccaaacacg cacaaatcca ttccttctaa ttttagctta
     3841 aacgcgtgtc tagtgcaaat catgaaagat gattctgata tatttgggta ataggttcta
     3901 ctttaggaaa gaatgattag tttttgtatt ttttctcaca atcctattga cctttaaagt
     3961 gtaaaaggat atccttttag aagactgtaa aaaggtagga gacaaaatga attcattatt
     4021 tagaagaaaa ccgatagaag atttaatgca taataaaagt ggtagcacgc atttaaagca
     4081 aacgctcgga ccacttgatt taactttact tggagtcgga gcgattgttg gaacggggat
     4141 ttttatttta ccaggaacag tcgcagcgaa aaatgcggga ccagcgatta ttttctcttt
     4201 tgtgattgcg gcgattgttt gtgcgattgc agcaatgtgt tactcagagt ttgcgtctag
     4261 tgttccggtt gcagggagcg cctatacgta tggttatgtt gtttttggtg agttaattgg
     4321 atggttgctt ggttgggcac ttattttaga atacgggctt gcagtggctt ctgttgcgag
     4381 tgggtggtct tcttatttaa atgcgttact ttcaggcttt catatttcca tcccagaagc
     4441 aatctctggg ccttttaatc cagaagtagg tacatttatt aatttaccgg cgattattat
     4501 tgttcttgtg attgcctttt tattgacgct tgggataaaa gaatcaacgc gcgtgaatac
     4561 cattatggta gctattaaag ttggtgttat tttacttttc ttagttgttg gtgtatttta
     4621 tgtcaaaccg gataattggc aaccgtttat gccatttgga attagtggcg ttatgaatgg
     4681 tgcggcgcta gttttctttg cttatttagg ttttgatgcc gtttcgtctg cagctgaaga
     4741 agtgaaagat ccgcaacgga caatgccgat tgggattata ggctcgctac ttatttgtac
     4801 ggtgttatat gttgctgtat ccgctgtttt aactggaatg gtgccgtaca cagatttaaa
     4861 cgtaacagat ccagtggctt atgctttgca agtgattaac caagattggg tagctggcat
     4921 tgtatcactt ggcgcggttg ttgggatgat tacagtaatt ttagtaatga gttacggggc
     4981 gactagactg atttttgcga tgggacgtga tggtttatta ccaaaagtac ttgcagaaat
     5041 taatcaaaaa tatcaaacac ctgttaaaaa cacctggatt tttgcagtga tagtcgcgat
     5101 tattagtggg cttgtaccat tagatcgatt ggctgagttg gttaatattg gaacactctt
     5161 ggcgtttatg atggtgtcta tcgggattat ctttttacgt aaaaataaag atattcaagc
     5221 gagaggattt aaagtaccat tttatccagt tcttccaatt gtttcgttct tattatgtgc
     5281 gtttttaatt agccgtctgt ctgttcatac gtggattctt tgcggaattt ggtttgttat
     5341 tggtttaatt gtttactttg cttatggtag aaaacatagt gaattactta aaaaataatt
     5401 aacttacttt ttgtaagtcg ttttattgga atttgaacgc tccttatgtt gtaatgaatg
     5461 tattacaata aaaggagcgt tttttacatg gcagaaatta gtgaagaatt acgacttggc
     5521 gaagttgtat tgaatgttgg acatttaaaa gagatggcag gtttttatca agaagtaatt
     5581 ggtttgaagt tattagagga aaatgagcga atggttcggc tcggcgtgag tgggtctgat
     5641 gaagctttac ttgttcttaa aaagatagat aatgcggttg ttccagaagt gccgcggatt
     5701 ggcttgtttc ataccgcctt tcttttgcca acgcgagaaa gtttagcgga tgtgttactg
     5761 catttggcta aatcaggtta tccgattgat ggcgcgggag atcatgctta tagcgaggcg
     5821 ctttatttac atgatattga aggcaatggc attgaaattt atgcagaccg tccaaaagca
     5881 gaatggatgc gtgatggcga tggcaattta ccgatggtga cagaacaagt agatgtggat
     5941 tcgttgcttc aaattgcgac cgatgaacca tttacaggga tgccaaacgg aacgataatt
     6001 ggtcatgtgc atttacaagt ggcagatgct gacaaagcgg aacaatttta taaagaggta
     6061 cttggaatga acttaacgac cgctattccg tcagcaaggt tttttgcggc tggtgattat
     6121 catcatcaca tcggttcaaa cgtctgggca ggtcgcaact tggaacttct gcaagaaaat
     6181 gaaacgggac tcgcttggtt tacaattatt actcctgata aagatgcaat aataaccaac
     6241 ttaatagaac aaggatatga tgtgaaacga ttggaaaata ctatttccgt gacagattct
     6301 aacggaatta agattcactt caaataaaaa aaaactgttt aagcgaaaaa cgagcttaaa
     6361 cagttttttg atgcgataat aagggaatgg tagattagac taattatttt aatgtttacg
     6421 ttgcattgtt ttcttgaaaa gccaattgct agattggaaa agcgttaaag caattaaaac
     6481 tacgccaatt ccaagattta aatacgaaag ggctacggct gcgttatctg gaaatgaatt
     6541 ttgcacagtg atgaaaataa taaagaaacc gctgtttgca caaaacgcaa tccaaaacca
     6601 agataatcca ctaagtttac caaccacaaa agaaagtcct gagattattg ctgctaaaac
     6661 aattcctgta actatcatag acataaattc c
//
LOCUS       DABQVC010000157         6614 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.157,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000157 DABQVC010000000
VERSION     DABQVC010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6614
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.157"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            54..515
                     /locus_tag="IBJ56_002244"
     CDS             54..515
                     /locus_tag="IBJ56_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAM3418491.1"
                     /translation="MVGINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLA
                     MINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKL
                     SKKGEDLSKRSTANAFMYKAMMKVFENLTENEIEELIRLNKKVETLLKKSK"
     gene            complement(567..2027)
                     /locus_tag="IBJ56_002245"
     CDS             complement(567..2027)
                     /locus_tag="IBJ56_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAM3418492.1"
                     /translation="MKKETHGEIRRDLKTRHLSMIAIGGSIGTGLFLASGNAIHTAGP
                     GGALVAYIAIGIMVYFLMTSLGEMATYMPVSGSFSTYASRFVDPAFGFALGWNYWFNW
                     AITLAVDISTAAIIVQFWLPNTPAWLWSAIFLILIFGLNALSVKAYGESEYWFSIIKV
                     ATVIIFLIVGVLTIVGILGGEVIGFSNFTAGDAPFKGGFFAILGTFLIAGFSFQGTEM
                     VGIAAGESATPETSVPKAIKQVFWRILLFYIFAIFIIGMIIPYTNPNLLSAEATDVAI
                     SPFTLVFEKAGLAFAASVMNAVILTSVLSAGNSGLYASTRMLWAMARDKKAPKFLGKV
                     NRRGIPMAALIVTTIVGAMTFITTLTENGTVIYTWLLSASGLTGFIAWVGIAISHYRF
                     RKAFIKQGHDLSELKYKAKFFPFGPILALILCILVIVGQDYAAFLKPEFTNPAWWQKI
                     GISYIGLPIFLVFWLSFKFTNKTKVIPLEDCKFDQK"
     gene            complement(2383..3144)
                     /locus_tag="IBJ56_002246"
     CDS             complement(2383..3144)
                     /locus_tag="IBJ56_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="blue-light photoreceptor"
                     /protein_id="HAM3418493.1"
                     /translation="MTAYPQFDVILKALNLSSVGVIITDPEQKDNPIIFVNTGFENIT
                     GYAKEEALGSNCHFLQGDDTDKKEVAKIRHAINEKSTANVLLKNYRKDGTSFMNELTI
                     EPIYDDHNHLYFVGIQKDVTTEHDYQLELEKSLTEIEKLSTPIVPIKENICVLPLIGS
                     LTHDRFQHMSEYVSEYMDHGKEDYLIMDLSGLAEFNEDAVMNLVKFHGFMKLTGVELI
                     ITGISPKFAMTLIRYEENLASLTTYSTIKEALQFY"
     gene            3297..3650
                     /locus_tag="IBJ56_002247"
     CDS             3297..3650
                     /locus_tag="IBJ56_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418494.1"
                     /translation="MYITFTDSAKNRLAALRSNLEGRLHLYYDTEGCSCENSGIFTLR
                     LVEEKTAEDDEIESNIGPVLIKRWTEMFLEEALTIDYNDTEKTMILKSDGQYYNRNLL
                     LVTNTDEVISCPVTS"
     gene            3805..4443
                     /locus_tag="IBJ56_002248"
     CDS             3805..4443
                     /locus_tag="IBJ56_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HAM3418495.1"
                     /translation="MEQPSVDELKNWRNVMLLHRFALEEVNTKLKILNEEFQFIHDYN
                     PMEHLKSRVKSLESIGAKLEKKKVDITPENALKYVHDIAGIRITCSFVSDIFRIHEML
                     AGQSDITIKRVKDYVTNPKPNGYRSLHLLCEVPVFLTNRSEKMTVEIQIRTVAMDFWA
                     SLEHKIYYKYQQEAPIELVKELQDAARIITHLDEKMKNLNDQIDQYKKEKEK"
     gene            4572..>6614
                     /locus_tag="IBJ56_002249"
     CDS             4572..>6614
                     /locus_tag="IBJ56_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HAM3418496.1"
                     /translation="MEIFLYVLALLVAIFISNLLNRFVPFVSVPLIQIGLGVLIAIMP
                     ITFDLQLNPELFLVMFIAPLLFNDGRQTDKAALWGMRMPILVLALGLVFATVVVIGYF
                     VHWMIPTIPLAAAFALAAALAPTDAVAVSSLSGRINLPKRIMNLLEGEALINDASGLV
                     AFQFAIAAMVTGVFSFMDASISFFVIAIGGILVGLILSWLKFRLLKWVRGLGMEDVTF
                     HMLIQILTPFIIYLAAEEIHVSGILAVVAAGIMHSMEQKKMDPQSVKLNVVSQSTWSV
                     IIFVLNGLVFLLLGTQLPAITEVVWNDSGSSNLQVMAYILSITAALILLRFLWVYISW
                     SIGAKQRQKQNKKTQLPKFRPVVLTSLSGVRGAVTLASALAIPFFLDDGSLFPQRSLI
                     IFIASGVILCTLVIATFILPLLAKSEEVTTEDERAETATRIRILRNVIRELKEQMLPE
                     TKAATDEVIEDYRRRIYDLQQNNSSNRGMDERERAKRLEIIQWERENTQKMTDEGRIV
                     ATDSYRYQHYLNMMEQAIKQRFRTKIKTAWMFLYRLIMLVIHPKKWGRITHKVKKGIS
                     KDSERFQAIRQLREENEVLIISKLKEQLTKENVDIIGPLITEHTIFLERVRKEHSPRG
                     KRAKFEQKKREVQVLAFQLERDIIQNMFEKGGISRDLARDLRQNLNMIETYLYDDFL"
BASE COUNT         2191 a         1192 c         1303 g         1928 t
ORIGIN      
        1 attgagtttt tcggttaaag tgcgtagaat aggttacaag aggaggttgg atgatggtag
       61 gaattaatac agatacagaa aatattagtg aactattaaa aacttattgg tcaatccagc
      121 gaatttcagc gggatatgcc gatcaaaatg cggcgagttt aggattaacg attcagcaac
      181 ttgccatgat taatgtgatt tacagcacac ctggtatttc agtggcggat ttaacgaaac
      241 gattaattat tactggaagt tcggctgcag ctaatgttga cgggttaatc agccttggct
      301 tagtagtgaa attaaacaaa acaattccaa atgacagcat ggatttaaca ctcaagcttt
      361 cgaaaaaagg agaagactta tcgaaacgct ccactgcaaa cgcttttatg tacaaagcca
      421 tgatgaaagt attcgaaaac ctaaccgaaa acgaaataga agaattaatt cgcctaaata
      481 aaaaagtcga aaccttactg aaaaagagta aataaaaaca tctcctgtat cattcaagta
      541 aaaatgaatg aacaagagat gtttttttat ttttgatcaa atttgcagtc ttccagtgga
      601 ataacttttg ttttatttgt aaatttaaaa gatagccaga aaacaaggaa aatagggagg
      661 ccgatataag aaataccgat tttttgccac caagcaggat tcgtaaattc tggtttcaaa
      721 aatgccgcgt aatcttgacc gacaataact aaaatacata aaattagtgc taaaataggt
      781 ccgaatggga aaaattttgc tttatatttt agttcactta agtcatgtcc ttgtttgata
      841 aatgcttttc ggaaacggta atgactgata gcgatgccga cccaagcaat aaatccggtt
      901 aaaccagagg cggaaagtaa ccacgtataa atcactgtgc cgttttctgt tagcgttgta
      961 atgaatgtca ttgcaccaac aatcgtcgta acaattaaag cagccatcgg aatgccacga
     1021 cggtttactt tacccaagaa tttaggcgct tttttatcac gagccattgc ccaaagcatt
     1081 cttgtggaag cgtaaagacc tgaattacca gcagataaaa cagaagtcag gataaccgca
     1141 ttcattacgg aagccgcaaa tgcaagacca gctttttcaa atacgagtgt aaatgggcta
     1201 attgccacat ctgttgcctc ggcactaagt aaattcgggt tagtataagg aataatcatc
     1261 ccaataatga aaatcgcaaa aatataaaat agcaaaatcc gccagaatac ttgtttaatc
     1321 gcttttggca cgctggtttc tggagtagca ctttcaccag ctgcaatacc aaccatttca
     1381 gtcccttgga aagaaaatcc agcaattaag aaggtaccta agatggcaaa aaatccacct
     1441 ttaaacggag catcgccagc agtaaagtta gaaaagccaa taacttcgcc gccaagaatt
     1501 ccgacaatag taagcacgcc gacgataagg aaaataataa ccgtggccac tttaataatt
     1561 gaaaaccaat actctgattc tccgtatgct tttaccgaaa gcgcgtttaa gccgaaaatc
     1621 aaaattaaga aaatcgcgct ccatagccaa gcgggggtgt tcggtagcca aaattgaacg
     1681 ataattgcag cagtggaaat atcaaccgca agtgtaatgg cccagttaaa ccaataattc
     1741 caaccaagcg caaaaccgaa agctgggtca acaaatcgac tagcataggt actaaatgaa
     1801 ccagatacag gcatgtaagt agccatttcg cctaaacttg tcattaaaaa gtacaccata
     1861 atcccgattg ctatataagc aactaaagcg ccaccaggtc ctgctgtatg aatcgcatta
     1921 ccacttgcta aaaataatcc cgtcccgatt gaaccaccaa tggcaatcat ggacaaatgc
     1981 cttgttttta agtcacgacg aatctcgcca tgtgtttctt tcttcactat taatctccct
     2041 ttctattatc agaggaagtg cgcaaaaaca gccaatctgc aagaaattgg ctgttacgta
     2101 ttttaccaac atcattttgt cagatagcac acctataaga aatttcgaca aattcttata
     2161 gcagtccagc ccctttagga aactgtccca acaactattt ctaaacaaag agaaaatagt
     2221 cacttcggcg atcaacctgt tcattctttg tcgtcggcgt ctttgtttcg cctcgaaaaa
     2281 attactagtg catctcgcaa cctctacctc accatttgga tgagggttta tatttgatta
     2341 tttacccata ataacggaaa acgggctatt ttgcaatatc ttttagtaaa attgtaatgc
     2401 ttctttgatt gtgctgtatg tagttaagct ggctaggttt tcttcgtagc gaattaatgt
     2461 catggcgaat tttggcgata ttccggtgat gatgagctct acaccagtta atttcataaa
     2521 tccgtggaac ttcacaagat tcattaccgc atcttcatta aattcagcta aaccagaaag
     2581 atccataatc aaataatctt ccttgccatg gtccatgtat tcactcacat attcagacat
     2641 atgctgaaaa cggtcatgtg ttagcgagcc tatcagtggt aacacacaaa tgttttcttt
     2701 aatcggaaca attggcgtgg aaagtttctc gatttctgtt aatgatttct cgagttccag
     2761 ctgatagtcg tgctctgtcg tcacatcttt ttgaatgcca acaaaataga gatgattatg
     2821 atcatcgtaa atcggttcaa tcgtaagttc attcataaaa gaagtaccat cttttcggta
     2881 attttttagt aaaacattcg cagttgattt ttcgttaatg gcatgacgga tttttgcaac
     2941 ttcttttttg tcagtatcat ctccttgtaa aaagtgacaa ttggagccaa gtgcttcttc
     3001 tttagcatag ccggtaatat tttcaaaacc agtgttaaca aaaataattg gattatcttt
     3061 ttgctcagga tctgtaataa ttactcctac gctagacaaa tttaatgctt ttaaaataac
     3121 atcgaattgt ggataagcgg tcatctgcgt gtttctcccc ctttgtaaat acatttctat
     3181 cataccacgc aaatgaatga aaacccaatg tataatttgt gaaattaatc gtatgtgagc
     3241 agtgcggagg taaagttgga aatgtgggtg tataatagag ctagaggtga taagttatgt
     3301 atataacatt tacagatagc gctaaaaatc ggcttgctgc actacggtcg aatttagaag
     3361 ggcggctaca tttgtattat gatacagaag gctgttcttg cgaaaatagc ggtattttca
     3421 cattgcgatt agtagaagag aaaacagcgg aagatgacga aattgaatca aacattggtc
     3481 cagtgctaat taaacgatgg acagaaatgt ttttagaaga agcgctaact atcgattaca
     3541 acgacacaga aaaaaccatg attctaaaaa gcgatggtca gtattataat cgtaatctac
     3601 tgcttgtcac aaatacagac gaagtaatta gttgcccggt aacttcataa taatagaaga
     3661 aaagcctaga ataaattttt tattctaggc ttttttatga aaatttcatg agaaagtggt
     3721 gaaactttag acatatagtt acactgacct cggttttgta gtaacatgga ataggaagtt
     3781 tatacatatg gaaggagtgt cctcatggaa caaccatcag tagatgagct aaaaaattgg
     3841 cgaaatgtta tgcttcttca ccgttttgcg ttagaagaag tcaacacgaa acttaagata
     3901 ttgaatgaag aatttcaatt tattcatgat tataatccaa tggaacattt gaagtcacgt
     3961 gtgaagtcac tagaaagtat cggagcaaaa ttagaaaaga aaaaggtgga tatcacgcca
     4021 gaaaatgcac taaaatatgt acacgatatt gcgggcattc ggattacttg ttcttttgtt
     4081 tcagatattt ttagaattca cgaaatgctt gcagggcaaa gtgatatcac tatcaaacga
     4141 gtaaaggact atgtaacgaa tccaaaacct aatggctatc ggagtttaca tttactttgc
     4201 gaagtacctg tattcctgac aaatcgttcc gagaaaatga ccgtggaaat ccaaattcgg
     4261 acagttgcca tggatttttg ggcgagtttg gagcataaaa tttattataa atatcaacaa
     4321 gaagcaccaa ttgagttagt aaaagaatta caagacgccg cacgaattat cacccattta
     4381 gatgaaaaaa tgaaaaactt aaacgatcaa attgatcaat ataaaaaaga aaaagaaaaa
     4441 taatctaata gggagcttta tttctttgca agcgggatgg atgcatagaa ataaagctgt
     4501 tttatatttg cgagttaggt tattttgctt cataataata taggagaaaa aacgaaaggg
     4561 gacgatacat attggagata tttttatatg ttttagcatt acttgtggcc atctttattt
     4621 ctaatttact caaccggttt gttccctttg tttcggtacc actaatccaa attggccttg
     4681 gtgtattaat tgccattatg ccgattacgt ttgatttgca attaaatcca gaactttttc
     4741 tagtgatgtt tattgcgcca ttgctattta atgacggaag acagacggac aaagcagctc
     4801 tttggggtat gcgaatgccg attttagtat tagcgctcgg acttgtattt gcaacggttg
     4861 tcgtgattgg atattttgtc cactggatga ttccgacgat tccactagca gcagcttttg
     4921 ccttagcagc ggctcttgcg ccaacggatg ctgtagcagt tagttctctt tctgggcgga
     4981 ttaatttacc gaaacgaatt atgaatttgc tcgaaggtga ggcattaatc aacgacgcgt
     5041 caggactcgt ggcattccag ttcgcgattg cagcgatggt gaccggcgtt ttcagtttta
     5101 tggatgcaag tattagcttt tttgtcattg cgattggtgg tattttagtt gggctcattt
     5161 tgagttggtt aaaattccga ttgttaaaat gggttcgcgg ccttggcatg gaagatgtta
     5221 cgtttcatat gcttatccaa attttaacac catttattat ttacttagcg gcagaagaaa
     5281 tccatgtttc tgggattttg gcagttgttg cagccggaat tatgcactcg atggaacaaa
     5341 agaaaatgga tcctcagtcg gtgaaattaa atgtcgtttc gcaaagtact tggtcggtga
     5401 tcatttttgt tttaaatggt ttagtatttt tacttttagg cacacaactt cctgcgatta
     5461 cagaagtagt ttggaatgat tcaggaagta gtaatttaca agtgatggct tacattttgt
     5521 ctatcacagc tgccttaatt ttactgcgct ttttatgggt atacatatcg tggagcatcg
     5581 gcgcaaaaca aagacagaaa caaaataaaa aaacacagct acctaagttt agacccgttg
     5641 tacttacatc gctttctggt gttcgcgggg cagttacact tgccagtgcg ctcgcaatcc
     5701 cgtttttctt agatgacgga tcactatttc cgcagcgctc gctaattatt tttatcgcat
     5761 caggtgttat tctttgtaca ttagtgattg cgacatttat tttaccgtta cttgccaaaa
     5821 gtgaagaagt gacaacggaa gatgaacgag ctgaaactgc aacccggatt cgaatcctga
     5881 gaaacgtaat cagggaatta aaagaacaga tgctacctga aacgaaagcg gcaacggatg
     5941 aagtaattga agattatcgc agacgaattt acgatttaca gcaaaataat agttcgaatc
     6001 gaggcatgga tgaaagagaa cgtgccaaac gattagagat catccagtgg gaacgtgaaa
     6061 acacccaaaa aatgaccgat gaaggacgca ttgttgctac agatagctat cgttatcaac
     6121 actatcttaa tatgatggaa caagcgatca aacagcgctt ccggacaaaa ataaaaacag
     6181 cgtggatgtt cctttatcgt ctaataatgc ttgtcattca cccgaaaaaa tggggtagaa
     6241 tcacgcataa agtgaaaaaa ggtatttcta aagacagcga acgattccaa gcaattcgcc
     6301 aattacgcga agaaaatgaa gtactcatta tttctaaact caaagaacaa ctaacgaaag
     6361 agaatgttga tatcattggc ccattaatta ccgaacatac tattttccta gaacgcgtaa
     6421 gaaaagagca cagtccaaga ggtaagcgag caaaattcga acagaaaaaa cgcgaagtcc
     6481 aagtgctggc tttccaatta gaacgtgata ttattcagaa tatgtttgaa aaaggcggga
     6541 tctcgagaga cttagcccga gacttacgcc aaaatttaaa tatgattgaa acatatttat
     6601 atgatgattt ttta
//
LOCUS       DABQVC010000158         6601 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.158,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000158 DABQVC010000000
VERSION     DABQVC010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6601
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.158"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            39..665
                     /gene="isdC"
                     /locus_tag="IBJ56_002250"
     CDS             39..665
                     /gene="isdC"
                     /locus_tag="IBJ56_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme uptake protein IsdC"
                     /protein_id="HAM3418497.1"
                     /translation="MKKVLVLAAFIALFSFSFLSTGLTAQAALKDGTYSVDYTVLQGD
                     SDSVSMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGSAVSVTSKNTANDTR
                     KVSFPVSTLSSPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNDT
                     ATPATKSDSSNKVANPKSSDSSQMFLYGIIFVAAGTGLVLLKRRAIFK"
     gene            678..2387
                     /locus_tag="IBJ56_002251"
     CDS             678..2387
                     /locus_tag="IBJ56_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sortase B protein-sorting domain-containing
                     protein"
                     /protein_id="HAM3418498.1"
                     /translation="MKKLWKKGLVAFLALTLIFQLIPGFANAADSRLKDGGEYQVQVN
                     FYKDNTGKTTKESSEADKYIDHTATIKVENGQPYMYLTITNSTWWQTMAVSKNGARPE
                     KPAQADVYQDRYEDVQTVSTDAAKDTRVEKFKLSSLDDVIFSYMHIKVDAISYDHWYQ
                     VDLTIDPSTFKVISEPAITTPVTLSDGIYTIPFVAKKANDDSNSSMQNYFNNPAWLKV
                     KNGKKTVAMTVNDNKTVTALKTNLAGALQDVKVVSEDKDANTRIVEFEVEDLNQPLAA
                     HVNYEAPFNGSVYKGQADFRYVFDTTKATAASSYPGSDETPPVVDPGETKPPVTKPDP
                     GTTNPPVTTPPTTPSKPAVVDPKNLLNNHTYSIDFDVFKDGTTETSMMESYVMKPALI
                     KVENNQPYVYLTLTNRSWIKTFQYKANGVWKDMEVVSGDINKNTRTVKYPVKDGTANT
                     DVKTHVLIEDMPGFSYDHEYTVQVKLNAATIKDITGEDVTLKEPVKKDILNTGNVANN
                     NNAGPKLAKPDFDDTNSVQKTASSTEKNAKTNDSSSMAWYVTLFGASFLYLAYRLKRK
                     RLS"
     gene            2474..3346
                     /gene="isdE"
                     /locus_tag="IBJ56_002252"
     CDS             2474..3346
                     /gene="isdE"
                     /locus_tag="IBJ56_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     IsdE"
                     /protein_id="HAM3418499.1"
                     /translation="MRKMAVISLMLLLFLVGCGKEEAAQKPEQKSEKEPKIVATTVAI
                     TEIMDKLDLPLVGIPTSSKKLPERYADVKETGSPMGPDLEIIRMLKPDMVLSTKTLEA
                     DLKAGFEGADLKADFLDFTSIASMQTEIKKLGAEFDRKEEAAKLNGDLTNEIDKVKSS
                     VAKKKKPTVLILMGVPGSYLVVTEHAYIGDLVKLAGGENVIKDQKVEYLASNTEYLQS
                     ANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLFGMTASLNA
                     PEALQEMEKMLYDN"
     gene            3336..4325
                     /locus_tag="IBJ56_002253"
     CDS             3336..4325
                     /locus_tag="IBJ56_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HAM3418500.1"
                     /translation="MTIKQKSSFGAVIILLIGTILWAVQAGSLSMSIPAFLSGVFSGG
                     NEMVNVVIDLRFPRIIIALIAGAALSVSGLLLQAVMRNPLADAGVIGISAGAKFFSFV
                     IILFLPELYFWLPLFSFIGGALAFFLVFLFSYRSDFNPLRFIIIGIAINAVFTGLSDA
                     LSSQVALVSSQSASSAASLAMKKWSDVETLLIYVTIGLICALLLAKWCNVLGLENKMA
                     RGFGVPVNKTRIWLALIAVLLASITTAVVGVIAFVGLLVPHIARKLVGGNYQILVPFS
                     ILFGALLLLFADTLGRTLFQQMEIPASVIMLIIGGPFLIFLMRKGDFYGSKGR"
     gene            4306..5085
                     /locus_tag="IBJ56_002254"
     CDS             4306..5085
                     /locus_tag="IBJ56_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418501.1"
                     /translation="MEVRDVNFSYNGTDAILKNVSFTIQKNKINTIVGPNGSGKSTLL
                     EILARLLSPDSGDVLLEGKSIFEWKAKEFAQNVAIVHQNNVLPNELTVKELLYFGRLP
                     YKNWRMTRTKADDLAVEQALMQTELTEKAEKFVDSLSGGERQRVFIATALVQDTPILL
                     LDEPTTFLDMYFQLEILELVKRLNQEKNLTIVMILHDLNQALMYSDHLIVMKNGKVVA
                     KGVPGELLTTELIAETYGVVAKVLNDANTGKYIVPQKRKEF"
     gene            5089..5829
                     /gene="srtB"
                     /locus_tag="IBJ56_002255"
     CDS             5089..5829
                     /gene="srtB"
                     /locus_tag="IBJ56_002255"
                     /EC_number="3.4.22.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class B sortase"
                     /protein_id="HAM3418502.1"
                     /translation="MKIKSFLGKSLTLVVLVVFLFSGWKIGMELYENKHNQTILDDAK
                     AVYTKDVATTNVNGEVRDELRDLQKLNKDMVGWLTIADTEIDYPILQSTDNDYYLHHN
                     YKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLAAHPTFS
                     YESGLANYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSMYKLNVKVSGKD
                     RIITLSTCDTEKDYEKGRMVIQGKLVTK"
     gene            5890..6366
                     /locus_tag="IBJ56_002256"
     CDS             5890..6366
                     /locus_tag="IBJ56_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siphovirus Gp157 family protein"
                     /protein_id="HAM3418503.1"
                     /translation="MKLYELTDNYLKVQEFLEENNTDAVKDTLDALTDSFHDKSENIV
                     KLIKSLAADAEMAGIEAKRLLKRKQALENNVQNLKNYLQTEMERMEIRKINSTLFTIQ
                     IQKNPPSVEIVEEALLKSFFLLQEPKIDKKRIAEILKSGEEVKGARLVESESIRIR"
BASE COUNT         2165 a          947 c         1476 g         2013 t
ORIGIN      
        1 ataaatagta gtttttatta aagaagggag atttaagtat gaagaaagtt ttagttttgg
       61 ctgcttttat tgccttattc agtttttcgt ttctttctac gggattaacg gcacaagctg
      121 ctcttaagga tggcacctat tcggttgatt atacggtact acaaggggat agtgattccg
      181 tatctatggc gaatgactat tttgataagc ctgcaacggt aactgtaaat ggaggtaaat
      241 ctactgttag tttgcaagtg aaccatagta agtggattac tggtttatgg gtcgaaggta
      301 gtgcggttag cgtgacttcg aaaaatacag cgaatgatac tcgaaaagtg tcgtttcctg
      361 tgtcgacttt aagtagtcct gttaatgcaa aaatcaaagt agatattgat gatgacgatt
      421 taaattatca tcatgagtat caaatcaagt tacgttttga tgaaggttct gctaaagcat
      481 tagctggcgc ggtaaagtct tctgataata acgatacagc aaccccagca acaaaaagtg
      541 actcaagtaa taaagtagca aatccgaagt ctagtgattc tagccaaatg tttttatatg
      601 gaattatttt tgttgcagca gggacagggt tagttttact taaaagacgt gcgattttta
      661 aataaagggg gattatgatg aagaaattat ggaaaaaagg tttagtagct ttcttggctt
      721 tgacacttat ttttcaattg atacctggtt ttgctaatgc ggctgattct cgtctgaaag
      781 atggcgggga ataccaagtt caagtgaatt tttataaaga taatacaggg aaaacaacga
      841 aagaatcttc agaggcagat aaatatattg accatacagc aacgattaaa gtagaaaatg
      901 gtcaacctta tatgtactta acaattacaa atagtacttg gtggcaaaca atggcggttt
      961 caaaaaatgg ggctcgtcca gaaaagccag cacaagcgga tgtttatcaa gatcgttatg
     1021 aagatgttca aacagtgagc acagacgcag cgaaagatac gcgtgtagag aaattcaagc
     1081 ttagttcttt agatgatgtt attttctctt atatgcatat taaagtagat gcaattagtt
     1141 atgatcactg gtatcaagtg gatttaacca ttgatccaag tactttcaaa gttatttcag
     1201 aaccggctat tacaacacct gtgactcttt cggacggaat ttacacgatt ccttttgtag
     1261 cgaaaaaagc aaatgatgat agcaactcaa gcatgcaaaa ttattttaat aatcctgctt
     1321 ggctgaaagt gaaaaatggg aagaaaactg ttgcaatgac agtaaatgat aataaaacag
     1381 taacagcttt aaaaacaaat cttgctggag ctttgcaaga tgttaaagta gtttctgaag
     1441 ataaagatgc aaacacgcgt attgtggaat ttgaagtgga ggatttaaat caaccacttg
     1501 cggctcatgt taattatgaa gcgccgttca atggttctgt atacaaagga caagcagact
     1561 tccgttatgt gtttgataca acgaaagcaa ctgcggctag ttcgtaccct ggtagtgatg
     1621 agacgcctcc tgtagtagat ccaggcgaaa caaaaccacc agtaacaaaa cctgatccag
     1681 gtacaacgaa tccaccagtg actacgccgc caacaacacc aagtaaaccg gcagtagttg
     1741 atcctaaaaa tttactgaat aaccatacgt actccattga ttttgatgta tttaaagacg
     1801 gaacaacgga aacttctatg atggaaagct atgtgatgaa accggcttta atcaaagtag
     1861 aaaataacca accttatgtt tatttaactt taacaaacag aagctggatt aaaactttcc
     1921 agtataaagc aaatggtgtt tggaaagata tggaagttgt ttccggagat atcaacaaaa
     1981 atacgagaac cgtcaagtat cctgtaaaag atggcacggc taatacagat gtaaaaacgc
     2041 atgtattaat tgaagatatg ccaggcttct cttacgacca tgagtatacg gttcaagtaa
     2101 aacttaatgc agcaacaatt aaagatatta ccggggaaga tgtaacgtta aaagaaccgg
     2161 tgaaaaagga tattttaaat actggcaatg tagcgaataa caataatgct gggccaaaat
     2221 tggcaaaacc cgattttgat gacacaaatt ctgttcaaaa aacggcaagt agcacagaaa
     2281 aaaatgcgaa aacgaatgat tcatcaagta tggcatggta cgttacgtta tttggagctt
     2341 ccttccttta tttagcttat cgattaaaac gtaaaagatt gagttaataa aactagtaaa
     2401 agcgagttag gttgggggtt tcctttgctt aactcgcttt accgatttta ttttataaat
     2461 gggggaatta gtgatgagga aaatggctgt catatctttg atgttattac tttttttagt
     2521 tggctgtgga aaggaagagg cggctcaaaa gcctgaacaa aaatcggaga aggagccaaa
     2581 aattgtggcg actacggtag cgattacgga aattatggat aaacttgatt tgccactcgt
     2641 tggaattccg actagttcta aaaaacttcc ggagcgttat gcagatgtaa aggaaactgg
     2701 gtcgcctatg gggcctgatt tggaaattat tcggatgttg aagccagaca tggtcctttc
     2761 aacgaaaacg ctagaagcgg acttaaaggc tgggtttgaa ggggccgatt taaaagcgga
     2821 ctttctagac tttacgagta ttgcctcgat gcaaacagaa attaaaaaac ttggagcaga
     2881 atttgatcgt aaagaggaag cagctaaatt aaatggtgat ttaacgaatg agattgataa
     2941 ggtgaagtcg agcgtggcga aaaagaaaaa gccaactgtt cttattctga tgggggttcc
     3001 gggcagctac ttagttgtaa cggaacatgc gtatattggt gatttggtca aacttgctgg
     3061 tggagaaaat gtcattaagg accaaaaagt agaatattta gcttctaata cagaatactt
     3121 acaaagtgcc aatcctgata ttattttgcg ggcggctcat ggtatgcctg ctgaagtggt
     3181 taaaatgttt gacgaggaat ttaaaacaaa tgatatttgg aaacattttg atgcggtgaa
     3241 aaataatcgg gtgtatgatt tggatgaaaa tttatttggt atgacagcga gtttgaatgc
     3301 accagaagca ctacaggaaa tggaaaagat gctttatgac aattaagcaa aaaagttctt
     3361 ttggggctgt aattatttta ttgattggga ctattttgtg ggcagttcag gcgggaagtt
     3421 tgtcgatgtc gattccagct tttttgagtg gggtttttag tggcggaaat gagatggtga
     3481 atgtcgtgat tgatttgcga tttccgcgga ttattattgc cctgatagct ggtgcggcgc
     3541 tatcggtttc agggttgtta cttcaagctg tgatgcggaa tccgcttgct gatgctgggg
     3601 tgattgggat ttctgcgggt gcgaaatttt ttagttttgt gattatttta tttttaccgg
     3661 aattatattt ttggttgcca cttttttctt ttattggggg agcactggct ttttttctag
     3721 tctttttgtt tagttatcgt tctgatttta atccgcttcg ttttattatt attgggattg
     3781 cgattaatgc ggtttttaca gggctgagtg atgcgttatc ttcgcaagtg gcgcttgttt
     3841 ctagtcagtc ggccagtagt gctgcaagtt tggcaatgaa aaaatggtcc gacgtggaaa
     3901 ctttattgat atatgtaacg attggactga tttgcgcgct tttacttgct aaatggtgca
     3961 atgtgttggg gcttgagaat aagatggcta gaggctttgg tgtgccggtt aataagacac
     4021 gtatttggct ggcattgatt gctgtactcc ttgcgtcaat taccacggcg gtagttggtg
     4081 ttattgcgtt tgttggttta cttgtaccac atattgccag aaaactagtt ggcggaaatt
     4141 atcaaatact tgtgccgttt tcaatattat ttggggcttt attgctactt ttcgcggata
     4201 cgctaggcag aacgttattt caacaaatgg aaatccctgc gtctgtgatt atgcttatta
     4261 ttggtggtcc gttcttaatc tttttaatgc gaaagggtga tttttatgga agtaagggac
     4321 gttaatttta gttataatgg aacggatgcg attttaaaaa atgtctcctt tactatccag
     4381 aaaaataaaa tcaatacgat tgttgggcca aatggtagtg ggaaatctac tttgttagaa
     4441 attttggcta gactcctttc gcctgattct ggtgatgttt tactagaagg gaaatcgatt
     4501 tttgaatgga aagcaaaaga atttgcgcaa aatgtagcga ttgttcatca aaataacgtt
     4561 cttccgaatg aactaacggt gaaggaattg ctttactttg gtcgtctacc ttataaaaat
     4621 tggcgaatga ctcggacgaa ggcggatgat ctggctgttg agcaggcttt gatgcaaacg
     4681 gagctaactg aaaaagcgga gaaatttgtt gatagtcttt ctggaggaga gcggcagcgt
     4741 gtttttatag caacagcatt ggttcaagat acacctattt tgctgttgga cgagccgacg
     4801 acatttctgg acatgtattt tcaactagaa attttagagt tagtaaaacg gttaaatcaa
     4861 gaaaaaaatt tgactattgt aatgattttg catgacttaa accaagcgtt gatgtatagt
     4921 gaccatttga ttgtgatgaa aaatgggaaa gtggttgcaa aaggagtacc aggagaatta
     4981 ctaacaacgg agctgattgc tgaaacttat ggtgtagttg cgaaggtttt aaacgatgcg
     5041 aacactggga aatacattgt tcctcaaaag cgaaaggagt tttaaagagt gaaaataaaa
     5101 tcgtttttgg ggaaaagttt gaccttggtt gtgttagtgg tttttctttt ttctggatgg
     5161 aaaattggaa tggaactgta tgaaaataag cataaccaga caatcctaga tgatgcgaaa
     5221 gctgtttaca caaaagatgt tgctactaca aatgtgaatg gtgaagtacg tgatgagctt
     5281 agagatttgc aaaaattaaa taaagatatg gttgggtggc tgacgattgc agatacggaa
     5341 atagattatc caattttgca aagtacggat aatgattact atttacatca caattataaa
     5401 aatgaaaaag cacgagcggg cagtattttt aaagattatc ggaatacgaa tgagtttttg
     5461 gataaaaata cgatcattta tgggcataat atgaaagacg gatccatgtt tgcggattta
     5521 cgtaaatact tggacaaaga ttttttggcg gctcatccaa cgttttccta tgaatcgggc
     5581 ttggcgaatt atgaagtgga aatctttgct gtgtatgaaa cgacgactga tttttattac
     5641 attgaaacag aatttccgga aacaactgat tttgaggatt atttacaaaa agtgaaacaa
     5701 caatctatgt ataaattaaa tgtaaaagtt agtggaaagg accgaattat aacactttca
     5761 acttgcgata cagaaaaaga ttatgaaaaa ggacggatgg ttattcaagg aaaattagta
     5821 acaaaatgag aaagcaccaa aatataataa catttggcgc tttttccttt tttggaaagg
     5881 gtgcgaacga tgaaactata tgaactaacc gataattatt taaaagtaca agaatttttg
     5941 gaagaaaata atactgatgc tgtgaaagat acgttagatg cgcttactga tagttttcat
     6001 gataaatcag agaatattgt taaacttatt aagtctttag ctgctgatgc tgaaatggcg
     6061 ggaatagaag cgaaacgact tttaaaacga aaacaagcac tagaaaataa tgttcaaaat
     6121 ttaaaaaact atttacaaac agagatggaa cgaatggaaa ttagaaaaat aaacagtaca
     6181 ctttttacaa ttcaaataca aaagaatcca ccaagtgtgg aaatagtgga agaagctttg
     6241 ctaaaatcgt tctttttact acaagaacct aaaattgata aaaagcgaat tgcagagata
     6301 ctaaaatctg gtgaggaagt aaagggtgct agattagttg aaagcgaatc gattcgaata
     6361 agataaataa aacaaccaaa atcgttgaat tcttcaacaa ttttggttgt tttttgttaa
     6421 taatgacatt tttgcggcta taaacgtaaa atagttcaca ttttcgtaac aaactgtcct
     6481 attttttgta ccttgagaac atttagctgc ttcctcctat gaaataatta atcttgagta
     6541 aacaaaggag gggcgaatgt gagtcatttg aaaaaattag tatctatatt aatttgtact
     6601 t
//
LOCUS       DABQVC010000159         6568 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.159,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000159 DABQVC010000000
VERSION     DABQVC010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6568
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.159"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            10..2340
                     /gene="gshAB"
                     /locus_tag="IBJ56_002257"
     CDS             10..2340
                     /gene="gshAB"
                     /locus_tag="IBJ56_002257"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HAM3418504.1"
                     /translation="MIKLDMTMLDSFKEDPKLRKLLFSGHFGLEKENIRVTSDGKLAL
                     TPHPAIFGPKEDNPYIKTDFSESQIEMITPVTDSIDSVYEWLENLHNIVSLRSENELL
                     WPSSNPPILPAEEDIPIAEYKTPDSPDRKYREHLAKGYGKKIQLLSGIHYNFSFPEAL
                     IDGLYDKISLPEESKQDFKNRLYLKVAKYFMKNRWLLIYLTGASPVYLADFSKTKHDE
                     SLPDGSSALRDGISLRNSNAGYKNKEALYVDYNSFDAYISSISNYIEAGKIESMREFY
                     NPIRLKNAHTDQTVESLAEHGVEYLEIRSIDLNPLESNGISKDELAFIHLFLIKGLLS
                     EDRELCSNNQQLADENENNIALNGLAQPALKNCDNEEISVVEAGLLELNKMSDFIQSL
                     RPEDTKLQAIIEKQKERLLHPEKTIAAQVKQQVTKEGYVDFHLNQAKTYMEETEALAY
                     KLIGAEDMELSTQIIWKDAIARGIKVDVLDRAENFLRFQKGDHVEYVKQASKTSKDNY
                     VSVLMMENKVVTKLVLAEHDIRVPFGDSFSDQALALEAFSLFEDKQIVVKPKSTNYGW
                     GISIFKNKFTLEDYQEALNIAFSYDSSVIIEEFIPGDEFRFLVINDKVEAVLKRVPAN
                     VTGDGIHTVRELVEEKNTDPLRGTDHLKPLEKIRTGPEETLMLSMQNLSWDSIPKAEE
                     IIYLRENSNVSTGGDSIDYTEEMDDYFKEIAIRATQVLDAKICGVDIIVPRETIDRDK
                     HAIIELNFNPAMHMHCFPYQGEKKKIGDKILDFLFE"
     gene            complement(2380..3828)
                     /locus_tag="IBJ56_002258"
     CDS             complement(2380..3828)
                     /locus_tag="IBJ56_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HAM3418505.1"
                     /translation="MSNTKFPDGFMWGGATAANQFEGGYNLGGKGLACADLFTGGTHT
                     EPRRITAQLEESTFYPSHEAVDFYHHYKEDIKLMAEAGFKVFRMSINWTRIFPTGKEA
                     EPNEEGLQFYEDVFKELKKYQIEPLVTIAHFDIPLALTNEVNGWASRDLIDYYLHYCE
                     VIFKRYKHLVKHWLTFNEINTATMEIGNYLSLGIRHAEGDFLHQKDDPTVRYQALHHQ
                     FVASAKAVKLGHSINPEFMIGCMIAYMPRYPRTCEPTDVLLAKQTEAMHSHFCGDVHV
                     KGYYPFYAKTFFKDNGIELEFDPEDEQVLREGTVDFYTFSYYLTLCASNDPAYKNSGK
                     SVIGGAENPYLKTNDWGMQTDPVGLRIALNDLYTRYNIPLMVVENGLGAFDKLEDDGT
                     INDPYRIDYFKEHILQMHKAIQDGVDLIGFTIWGCIDLVSASTGEMAKRYGIIYVDKY
                     DDGTGDYSRKKKASYYWYKDVISSNGEIGLRE"
     gene            complement(3821..5674)
                     /locus_tag="IBJ56_002259"
     CDS             complement(3821..5674)
                     /locus_tag="IBJ56_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HAM3418506.1"
                     /translation="MDYNQLAKEILQAVGGKNNVNEVYHCITRLRFQLKDQSKVNEKQ
                     LKDLDKVMGTNVAGNQFQVIIGNDVPKVFDALVTENPAWKNKETTNKTTRQKGIKGFF
                     SNIFDALSGVFAPILPAIAGAGLIKGFMALFVSLGWLATDTETYRILLAIGDGVFYFL
                     PILVAVSAARYFKANMFVALGIGAALLYPDLTALLSAGTTPHFIGLPVTPVTYAYSVI
                     PILLAIWIMSYVEKWVDRIIPTSLKLLFVPLITMFIVVPLTLVVIGPLGTFVGDGVSG
                     GINWLLNNGGVIGGILIGGAMAIIVMTGMHYAIVPFVISNLAKYGYDKFLPLTYISNM
                     SQAGATFGVFFRAKDKKLKSLAFSTGLTALMGVTEPAMYGINVVYKRPFMASLIGGAA
                     GGGFAMMFGVKAYVLTGNGGIPGLPGLVGDTFVYALIAMALAFIVALIFSYIFGIDEQ
                     MVEATPVAEKIAAGTEILQAPVTGELVKMSQVNDTTFADEIMGKSIAIKPNEGKLYAP
                     ANGTIISLFKTKHAIAMQSDNGAEILLHVGIDTVKLDGNYFTAHVATGDVVEQGDLLV
                     TFDMEKIAEKYDTTTMMVITNTNEYALVEAKDSGTVTKGNQVMELRSEQNE"
     gene            complement(5774..6568)
                     /locus_tag="IBJ56_002260"
     CDS             complement(5774..6568)
                     /locus_tag="IBJ56_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HAM3418507.1"
                     /translation="MDEDAQELLILGKGLGFNSKVGDPINESKIEKVFELKDDTMDKF
                     KMIVNEIPIQFLEVTDDIVKLFKMKTTKDISDVIYISLSDHLYFATQRLQENVVIENP
                     LSWEVKRFYQEEYAVAKEAAKMVESKLEIELPDAEISNIALHFVNAEVDSDMNDVTHI
                     MQLIQEIISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGETIDEMDEFLYQTVK
                     KSRGAIFECIDKIGVFLEKNYQFTMSHSEQFYLALHIERLLKRKNN"
BASE COUNT         2097 a         1445 c         1081 g         1945 t
ORIGIN      
        1 ggtgaaaaca tgataaaact tgatatgacc atgcttgatt cttttaaaga agaccctaag
       61 ctccggaagc ttttattttc tggacatttt ggtttagaaa aagaaaatat tcgcgtaact
      121 tctgatggaa aattggctct tacgccacat cccgctattt ttggtccaaa agaggataac
      181 ccatatatta aaaccgattt ttcggaaagt cagattgaaa tgattacccc ggtaacggac
      241 tcgattgact ctgtatatga atggcttgaa aatcttcata atatcgtttc gttgcgctca
      301 gaaaacgaac tactttggcc gtctagtaat ccacccattt taccagccga agaagatatt
      361 ccaattgctg aatataaaac gcctgatagc ccggacagaa aataccgcga acatttagca
      421 aaaggctacg gtaaaaaaat ccaattatta tctggcattc attataactt ctcattccca
      481 gaagctttaa ttgacgggct ttatgacaaa attagtcttc cagaagaatc aaagcaagat
      541 tttaaaaatc ggctatattt aaaagtcgca aaatacttta tgaaaaatcg ctggttgctt
      601 atttatttaa ctggcgcaag tccggtttac cttgctgatt tctcgaaaac gaagcacgat
      661 gaatcccttc cggacggtag tagcgcgctt cgtgatggaa tttctcttcg aaatagtaat
      721 gctggttata aaaacaaaga agctctttac gttgattaca attctttcga cgcttatatt
      781 tctagcatct ctaactatat cgaagcaggg aaaatcgaga gtatgcgtga attttacaac
      841 ccgattcgtt tgaaaaatgc gcataccgac caaacagtcg aaagtttagc ggagcacggc
      901 gtggaatatt tagaaattcg ctctattgat ctgaatccat tagagtcgaa tggtatttct
      961 aaagacgagc ttgcttttat tcacctattt ttaattaaag gtttgctttc agaagatcgc
     1021 gaattatgct ccaacaacca acaattagcc gatgaaaatg aaaataatat tgcgctaaat
     1081 ggtctcgcgc aacctgccct taaaaattgt gataatgaag aaatatctgt cgtagaggcc
     1141 gggcttttag agcttaataa gatgagcgat ttcatccaaa gcttgcgacc agaagacacc
     1201 aaactccaag caatcatcga aaaacaaaaa gaacgtctgc tacaccctga aaaaacgatt
     1261 gctgcacaag tgaaacaaca agtaacaaaa gaaggctacg ttgacttcca tttaaaccaa
     1321 gccaaaactt acatggaaga aaccgaagct ttagcctaca aattgattgg cgcagaagac
     1381 atggagcttt ccacccaaat catttggaaa gacgccatcg cgcgcggcat caaagtcgat
     1441 gtattagacc gggccgaaaa cttccttcgc ttccaaaaag gcgaccatgt ggagtatgta
     1501 aaacaagcga gcaaaacatc caaagacaac tacgtttccg ttttaatgat ggaaaataaa
     1561 gtagttacta aacttgtact tgcagaacat gatattcgcg ttccatttgg cgacagtttt
     1621 agcgaccaag cccttgcact agaagctttc tccctatttg aggataaaca aattgtcgtt
     1681 aaaccaaaat ccaccaacta cgggtggggt atcagtattt ttaaaaataa attcacgctg
     1741 gaagattacc aagaagcttt aaatatcgca tttagctatg atagctccgt tattatcgaa
     1801 gagttcattc ctggcgacga attccgcttc ttagttatta acgacaaagt tgaagctgta
     1861 ctaaaacgtg tccccgctaa cgtaaccggc gacggaatcc atacagtgcg cgagctggtt
     1921 gaagaaaaga acactgatcc tttgcgcgga acagaccatt tgaaaccact tgaaaaaatc
     1981 cgtactggtc cagaagaaac gctcatgctc tctatgcaaa acctttcttg ggacagcata
     2041 cctaaagcag aagagattat ctaccttcgc gaaaactcca acgtcagcac aggtggcgac
     2101 agcattgact atactgaaga gatggacgat tacttcaaag agatagctat tcgtgcgaca
     2161 caagtacttg acgccaaaat ttgcggcgta gacataattg ttccacgtga aacaatcgac
     2221 cgtgataagc atgctatcat cgagcttaat ttcaatcccg cgatgcacat gcactgcttc
     2281 ccttatcaag gggagaagaa aaaaattggt gataagattt tagatttctt atttgaataa
     2341 aaaaatccca gctactagtt tcgtagctgg gattttatat tactctctca atccaatttc
     2401 accatttgaa ctaatcacat ctttatacca ataataggat gctttctttt tacgcgaata
     2461 atcaccggtt ccatcatcgt atttatccac ataaataata ccataacgtt tggccatttc
     2521 ccctgtagat gcgctcacta ggtcaataca accccaaata gtaaatccaa tcaaatctac
     2581 accatcttga attgctttat gcatttgaag aatatgttct ttgaaataat caattcgata
     2641 cggatcatta atcgtcccat cgtcttccaa tttatcaaag gctcctaaac cattttcaac
     2701 taccataagc ggaatattat agcgagtata taaatcattc agtgcaatcc gaagccctac
     2761 aggatctgtc tgcattcccc aatcatttgt ttttaaataa ggattttcag cccctccaat
     2821 aacacttttt cccgaatttt tataggcagg atcgttggat gcacaaagcg ttaaataata
     2881 gctaaaagta taaaaatcaa ccgtgccttc tcgcaaaact tgttcatctt ctgggtcaaa
     2941 ttcaagctca ataccattat ctttaaagaa tgtttttgca taaaaaggat aatacccttt
     3001 gacatgaacg tcgccgcaga aatggctgtg cattgcttcc gtttgcttag ccaacaagac
     3061 atcagttggt tcgcaagtac gcgggtagcg tggcatataa gcaatcatgc agccaatcat
     3121 gaattctggg ttgatgctat ggcctagttt taccgctttt gcactagcaa caaattgatg
     3181 atgaagggct tgatatctca ctgttgggtc atctttttga tgaaggaaat ctccctccgc
     3241 atgacgaatg ccaagcgata aataattccc aatttccatt gttgcagtat ttatttcatt
     3301 gaacgtcaac cagtgtttta ctaaatgttt atagcgttta aaaatcactt cacaataatg
     3361 aagatagtaa tcaatcaaat cacgcgacgc ccagccgttc acctcattcg ttaatgctag
     3421 cggaatatca aaatgagcaa tcgtcactaa cggttcaatc tgatattttt tcagctcctt
     3481 aaaaacatct tcataaaact gtaatccttc ctcgttaggc tctgcttcct ttcctgtcgg
     3541 gaaaatacga gtccagttta tggacatccg gaacacttta aatccagctt ctgccattaa
     3601 cttaatatcc tctttataat gatgataaaa gtccactgct tcatgacttg gataaaaagt
     3661 ggattcttct aattgtgcgg taattcttct tggctctgta tgcgttccac cagtgaataa
     3721 atccgcacag gcaagccctt ttccgcctaa attataacca ccttcaaact ggttagccgc
     3781 ggtcgccccg ccccacataa agccatctgg aaacttcgta ttactcattt tgctcactcc
     3841 ttaattccat tacttgattc cctttcgtta ccgttccact atccttagct tctaccaaag
     3901 catattcatt agtatttgta attaccatca tcgttgttgt atcatatttt tctgcaattt
     3961 tttccatatc aaacgttact aataaatctc cttgttccac tacatcaccc gtcgcaacat
     4021 gtgccgtgaa gtaattacca tcaagcttca ctgtatcaat gcctacatgt aataatattt
     4081 cagcgccatt atctgactgc atagcaatcg catgttttgt tttgaaaagc gaaatgattg
     4141 tgccgttagc tggagcataa agtttacctt catttggctt aatcgcaata cttttaccca
     4201 taatttcatc tgcaaaagta gtatcattta cttggctcat ttttactaat tcaccagtaa
     4261 ctggagcttg caaaatttct gtcccagctg ctattttttc tgctacagga gttgcttcta
     4321 ccatttgctc atcaataccg aaaatataag agaaaattaa agccacgata aatgctaagg
     4381 ccatcgcaat taatgcataa acaaaagtat ctccgacaag acctggaagt ccaggaatac
     4441 caccgttacc agttaagaca tacgctttta caccaaacat cattgcaaag ccaccaccag
     4501 cagccccacc aattaacgac gccatgaaag gacgtttata taccacattt atcccgtaca
     4561 ttgccggttc cgtgacaccc attaatgcag ttaaaccagt tgaaaatgct aatgatttca
     4621 gttttttatc ttttgcccgg aaaaatacac cgaaagtcgc tcccgcttgg ctcatattgg
     4681 aaatataagt taacggtaaa aatttatcat aaccatattt tgctaaatta ctaataacaa
     4741 atggaacaat tgcatagtgc ataccagtca taacgataat ggccatggca ccaccaatca
     4801 agataccgcc aataactcca ccattattta ataaccagtt aattccgcca gatacaccgt
     4861 ctccaacaaa tgtacctagt ggcccaataa caacaagcgt caaaggaaca acaataaaca
     4921 ttgtaattaa tgggacaaac aacagtttta acgaggttgg aataatccgg tccacccatt
     4981 tttccacata agacataatc caaattgcaa gtaaaatcgg aataacagag taagcatacg
     5041 tcactggagt tactggtaac ccaataaagt gtggcgttgt ccccgcacta agtaaagccg
     5101 ttaaatccgg ataaagtagc gccgctccaa ttccaagcgc gacaaacata ttcgctttaa
     5161 agtaacgcgc ggcacttaca gcaactaaaa ttggcaagaa gtaaaatacc ccgtcaccga
     5221 tagctaacaa gatacggtaa gtttctgtat ctgttgctaa ccaaccaagt gaaacaaata
     5281 atgccatgaa acctttgatt aaacctgctc ccgcaatcgc aggaagaatt ggtgcaaaca
     5341 cgcccgaaag tgcatcaaag atattcgaga aaaatccttt tattcctttt tgccgtgtcg
     5401 ttttatttgt cgtttctttg tttttccaag caggattttc tgtcactaat gcgtcaaaca
     5461 ctttaggcac gtcatttccg ataattactt ggaattgatt ccccgcaaca ttcgtcccca
     5521 tcactttatc caaatctttt aattgttttt catttacttt cgattgatct tttaattgaa
     5581 accgtagtct ggtaatgcaa tgataaactt cattcacatt atttttccca ccgactgcct
     5641 gtaaaatttc ttttgctaat tgattgtagt ccatgctaat cctcctaaat ataatagaaa
     5701 aacctgaatg aaatgcacct aaaaaagcat acaatcatcc aggtattgcc cgcaaatcgc
     5761 ggtaacaagc ctattagtta ttttttcttt ttaaaagccg ttcaatatga agcgccagat
     5821 aaaactgttc cgaatgactc atcgtaaatt gataattctt ttccaaaaac acaccaattt
     5881 tatcaataca ttcgaaaata gcgcctctac ttttcttcac tgtttgataa agaaattcat
     5941 ccatttcgtc aattgtctcg ccaataatta cgcgttgaca gaaaaacttc agatgggtca
     6001 taaaacgata ataattcgta ctttcttcat caaattcaat gttaaaatga tatttaataa
     6061 tagaaataat ttcttgaatt aactgcataa tgtgtgtgac gtcgttcata tcactatcta
     6121 cttccgcatt aacaaaatgt agcgctatat tagaaatttc tgcatcagga agctctattt
     6181 caagcttact ttccaccatt ttcgcagcct ctttggccac tgcgtattct tcctgataaa
     6241 agcgtttcac ttcccacgag agcggatttt cgataaccac gttttcttgc aaacgttgcg
     6301 tggcaaagta cagatgatcc gaaagagaaa tatagatgac atcactaata tctttcgtcg
     6361 ttttcatttt gaaaagcttc acaatatcgt cagttacttc taaaaattgt attggaattt
     6421 catttacaat cattttaaac ttatccattg tgtcatcttt caactcaaaa actttttcga
     6481 ttttcgattc attaattgga tcgccaactt tagaattaaa gccaagcccc tttcccaaaa
     6541 tcagcaattc ctgcgcatcc tcgtcaat
//
LOCUS       DABQVC010000160         6544 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.160,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000160 DABQVC010000000
VERSION     DABQVC010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6544
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.160"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            16..966
                     /locus_tag="IBJ56_002261"
     CDS             16..966
                     /locus_tag="IBJ56_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HAM3418508.1"
                     /translation="MIEFFKTTNEKMEQISALEDGCWVKVTAPTDDEIEMLSKEMDVP
                     KPYILDALDSEERSRIELKRAEQDVRHSLVIVDYPYESEDELGYAMYETLPIGIVLTR
                     KHLVTITLRDLPILKDVQSMKLEEYDTTNHKQFLLKLLYAVSYYYLKYLNQIIKQTNN
                     LEIQIKQSMKNEQLYAFMAVQKSLVFFATALQSNKAILDKMEDVEHFMQQEDNHDLLR
                     DVIIENKQAIAMTDTYTQIISGMSDVFSSVISNNLNIVMKFLTSFTIILSLPTIVASI
                     YGMNIKLPFMHNEHAFALILLFTLLITTGVTVIFWRRKYF"
     gene            990..1631
                     /locus_tag="IBJ56_002262"
     CDS             990..1631
                     /locus_tag="IBJ56_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3418509.1"
                     /translation="MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTP
                     VRKAIAVLVSEELIEYELNRGAIVIESSMSAGRFIELLEMAEILVVQTIEKCKNKNLT
                     YKPEQGNALLEEMREIQKEEDVEAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFN
                     KAQKDIKMIPVLLEEETMETLEQLTYYMVEKKHDLAKEVIQKLVNLYIIRTFR"
     gene            1674..4364
                     /locus_tag="IBJ56_002263"
     CDS             1674..4364
                     /locus_tag="IBJ56_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HAM3418510.1"
                     /translation="MRKVYEIFILDWRRLFKAPLALLLVIALIILPSLYAWFNIEALW
                     DPYSNTSGIKVAVSIDDEGAEIDVPGKKPQQVNVGDQLKKTLEKNKKLGWTFVSEDEA
                     KKGVKSGKYYASIHIPKDFSEDMVSVVNDNVTKPTIDYSVNEKINAIAPKMTESGATT
                     IVNQISSEFVGTVSKAVLEEFNKAGIDLENELPTIRRLKTKVFQVQDALPELKKMGAE
                     AVKIEAKLPELKAKANQVVELNEKIPELNKATENVLLVEQQLPKIDQLGQDILVLQKK
                     IPEIKQIAESVKEVDENFGTIKKTVNDAVNESGKALDVIDTAMAAIPTVEKIAQNGSG
                     YVDKVSDFADEINKSFDTLAPAIKQNLTLMKQMADNIYQVTEAIKNGSITPEQAITEL
                     KKMEQDIDSLQQMITKQTATLESLNETLPNKPFTDLIANLKTINSQLGAQKETITKVR
                     TELEDGAQPSEELLNQLNEQAKKVSAKLDQILANYDSEIVPAIKVGLNQIQGDLKDSQ
                     KLLETLQAKIPEITQVLKDSRETLQTGQTYLKEFQERLPEIQKTLDEATKVINTKLDT
                     IIAGINEAANFYQNDYPNVKANIKKAANFIRDDLPGLEKEINQASNLIQEKMPEFEKA
                     IKIAADLSREELPEFEKAINNAANKITDFDKNYDLQSIIKMLRNDADKDSSFIANPVK
                     LKETSYYPIPNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLL
                     TFLSIGLMQALIVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGK
                     GIAIILLVLQISGAGGNFPIQVSPPFFQAIYPFLPFTYAVSLIRESVGGLYMPTVWID
                     MSVLAGFAILFITLGILLKKPLDKVVPKLSEKAKRSKLIH"
     gene            4410..5057
                     /locus_tag="IBJ56_002264"
     CDS             4410..5057
                     /locus_tag="IBJ56_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3418511.1"
                     /translation="MANKFKTLDKMVYNLLLEKIKNGELVANEHLAEEKLAREFVVSR
                     SPIRKAIATLTAQGIVSYHENSGAVLNDCIVDSDRYVQLMETIEIFVDAAIAKAAHFG
                     YEMDLEKLYARMQEMERLSYLTDIENYYDAHHRFILCLISFAENPYQVRIVKQIFFQM
                     IHFSDGINMFKSVEIREWTNKKSNQICELLAEEETELARKTIKSMFAELTIQAYR"
     gene            complement(5067..5603)
                     /locus_tag="IBJ56_002265"
     CDS             complement(5067..5603)
                     /locus_tag="IBJ56_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418512.1"
                     /translation="MNQNKITAGGLEFLVRFAAPTDRLKINDLMIDTARWLKESGSTQ
                     WSDILHGFDVHNIEQRIELGEVALFETEAGALAGAMIIRKTPSDWDTDLWEDLAIDKA
                     YYLHRIMVSRAFSGISLSKQMIYFAEKLGIEMSVPFIRLDCIESNETLNQMYVRYGFQ
                     FSGKKNGFYLYQKELSQK"
     gene            complement(5590..>6544)
                     /locus_tag="IBJ56_002266"
     CDS             complement(5590..>6544)
                     /locus_tag="IBJ56_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HAM3418513.1"
                     /translation="QTAKESLRGNWGIAIGIFVLAWLIETVGGGLIGWIPVIGWIAIF
                     LLTGPLYTGVAWVYLAISRREQPDVAYMFSGFKQFGRTVLAYLLISIFTFLWSLLLIV
                     PGIIKTYSYSQTFFILRDNPNISALDAITESRHMMNGHKGRLFGLSLTFLLWYLIPLA
                     VAIAGTVIVAGGMATTSYTADPAEVLSALAAGATFGGLVLILASWLITLGISLYVYPY
                     LITSIAVFYDDLYAATEGTFTEETVIVEEEVNPFGTTEADPFAEDTHPEGFGPEATKE
                     PETPVVPEAPEAPETPETPEVPETPEAPETPEAPKDNNEPK"
BASE COUNT         2263 a         1150 c         1314 g         1817 t
ORIGIN      
        1 aagggagata tctagatgat tgaatttttt aagacaacaa atgaaaaaat ggagcaaatt
       61 tctgctttgg aagatggttg ttgggtaaaa gtaactgctc caacagacga cgaaatagaa
      121 atgttgagta aggaaatgga tgtgcccaaa ccgtatattt tggatgcatt agattctgag
      181 gagcgctcta ggatagaatt aaaacgagca gagcaagatg taagacattc actagtcatt
      241 gtagattatc catacgaatc ggaggatgaa ctaggctacg caatgtatga aacacttccg
      301 attgggattg ttttaactag aaaacatctt gtaacaatca cgttgcgaga tctgccaatt
      361 ctaaaagatg tgcaatcgat gaagttagaa gaatatgata caaccaatca taagcaattt
      421 ttgttaaaat tattgtacgc tgtatcttat tattacctca aatacttaaa tcaaatcatt
      481 aaacaaacaa ataatttaga aatacagatt aaacaatcga tgaaaaatga gcaactgtat
      541 gcttttatgg cagttcagaa aagtttagta ttttttgcaa cggcccttca atcgaataaa
      601 gcaattctcg ataaaatgga agatgtagaa cattttatgc agcaagagga taatcatgat
      661 ttgctcagag atgttattat tgaaaataag caagcaattg caatgacgga tacatatacc
      721 caaataatta gcgggatgtc ggatgtattt tcttcggtta tttcgaacaa tttaaatatc
      781 gtgatgaaat ttttaacatc atttaccatt attttgtcat tacccacgat tgtggctagt
      841 atttatggga tgaatattaa gctaccattc atgcataatg agcacgcatt tgcattaatt
      901 cttttattta cgcttttaat tacaacggga gtaactgtca ttttttggcg tagaaaatac
      961 ttttaatata tagaaaacga gggatgagca tggaaaaaca aacatatgaa aaattagcat
     1021 attatacaat caaagaaaaa attctcagtg gaaagcttca tgtaggtcaa catatttcag
     1081 aagctggtat tgcaaaagaa ttatctatta gtcgaacgcc agtcagaaaa gcaattgcgg
     1141 ttttagtatc cgaagagtta atcgaatacg agctgaaccg gggggcaatt gtgattgaaa
     1201 gcagcatgag tgcaggacgt tttattgaat tattagaaat ggccgaaatc cttgtcgtac
     1261 aaacgattga aaaatgtaaa aataaaaatt taacctataa accagagcaa ggtaatgcgc
     1321 tattagagga aatgcgcgaa attcaaaaag aagaagatgt ggaggcttat ctgtcgttac
     1381 ttagcaaatg gttgttgcaa tttgttgcgc agttagctaa tagttatgct gaagatattg
     1441 ttaggaaaat gaagcgagat ttctttaata aagcgcaaaa agatattaaa atgattcctg
     1501 tgctcttgga agaagaaaca atggaaacgt tagaacagtt aacttactac atggtagaaa
     1561 agaaacacga tttagcaaaa gaggtaatac aaaaattagt gaatttgtat attatccgta
     1621 catttagata gtatttctaa aggtaaattg cttaaaaaca ggaggtgctt ttgatgcgga
     1681 aagtatacga aatatttatt ttagactggc gccgtctctt taaagcgcct ttagctttat
     1741 tattagtaat tgcattaatt attttgccat cattatatgc ttggtttaat attgaagcac
     1801 tttgggatcc gtattccaac acttcgggga tcaaagtggc agtttcgatt gatgatgaag
     1861 gcgcggaaat agacgtacct gggaaaaagc cgcaacaagt gaacgtcggg gaccagctca
     1921 agaaaacgtt agaaaaaaat aaaaaactcg gttggacttt tgtaagtgag gatgaagcga
     1981 aaaaaggcgt gaaaagtggg aaatactacg cgtctattca tattccaaaa gatttttcag
     2041 aagatatggt ttcggtcgta aatgataatg ttaccaaacc gacaatcgat tattccgtca
     2101 atgaaaaaat caacgctatc gcgccaaaaa tgaccgagag tggcgcaacg acgattgtaa
     2161 atcaaattag ttctgagttt gtcggcacag ttagtaaagc cgttttggaa gagtttaata
     2221 aagcggggat tgatcttgaa aatgaattgc caacaattcg tcgcctaaaa accaaggtat
     2281 tccaagtgca ggatgcttta ccagaactga aaaaaatggg agcagaagcg gtcaaaatag
     2341 aagccaaact acccgaacta aaagccaaag caaaccaagt tgtcgagcta aatgaaaaaa
     2401 ttcctgaact aaataaagca acagaaaacg tcttattagt ggaacaacaa ctaccaaaaa
     2461 ttgaccaact cgggcaagat attttagtgc tccaaaagaa aatcccggaa atcaaacaaa
     2521 tcgccgaatc ggtaaaagaa gtagatgaaa acttcggaac gattaagaaa acggtcaatg
     2581 acgcagtgaa tgaatcgggc aaagcgcttg atgtgattga tacagcaatg gcggcaattc
     2641 caacggtaga aaaaattgct caaaatggca gcggctatgt ggataaagta tctgattttg
     2701 cggatgaaat caataagtcc tttgatacgt tagcgcctgc tattaaacaa aacttaacgc
     2761 taatgaagca aatggcggac aacatctatc aagtgacaga agcaatcaag aatggctcaa
     2821 tcacgccaga acaagctatt acggaattga aaaaaatgga gcaagatatt gattccttgc
     2881 agcaaatgat tacgaaacaa acagcgacat tagaaagttt aaatgaaaca ttgccgaata
     2941 agccatttac tgatttaatt gcgaatttaa aaacgattaa tagccagtta ggcgcgcaaa
     3001 aagaaacgat tacaaaagta cgcacagaac ttgaagatgg cgcgcaacct tccgaggaac
     3061 ttttaaatca actgaatgaa caagcgaaaa aagttagcgc gaagttagac caaattttag
     3121 cgaactatga ttctgaaatc gttccagcaa ttaaagtcgg cttaaatcaa attcaagggg
     3181 acttgaaaga tagtcagaaa ctactagaaa ccctacaagc gaaaatccca gaaattacgc
     3241 aggttttaaa agattcgagg gaaacactac aaaccggtca aacatactta aaagaattcc
     3301 aagaacgctt accagaaatt caaaaaacgt tagatgaagc gacaaaagta atcaacacca
     3361 agctcgacac gattatcgca ggcattaacg aagcagccaa cttttaccaa aacgattatc
     3421 cgaatgtaaa agcgaacata aaaaaagcgg ccaacttcat tcgtgatgat ttaccagggc
     3481 ttgaaaaaga aataaatcaa gcctccaatc tcatccaaga aaaaatgccg gaattcgaaa
     3541 aagcgattaa aattgcggcc gatctttcga gggaagaatt gccggaattc gaaaaagcca
     3601 ttaataatgc agcgaataaa attaccgatt tcgataaaaa ttacgatttg caaagcatta
     3661 ttaagatgct cagaaatgac gcagataaag atagttcatt tattgccaat ccagttaagt
     3721 taaaagaaac aagctactat ccaattccaa attatggttc ggcaagttcg ccattttata
     3781 cagctctttg tttatgggtc ggtgcgctct tgttgatttc gttattacgt gtggatgtag
     3841 aagtgccggc aggaattttc agccattatc accgatattt tggccgattg ctgaccttcc
     3901 tatctatcgg attaatgcag gcgcttatcg tgacgctcgg gaatattttc ttgctcgggg
     3961 tatccatcgc agaaccatta ctacatgtac tattcagcat gtttatcagc gtggtgttca
     4021 tgacaattgt ctacacgctc gtatcgctat ttaataatgt tggaaaaggg attgcgatta
     4081 tcctgttagt tttacaaatt tcaggagcag gcgggaactt tccaattcaa gtttcgccac
     4141 catttttcca agctatttat cctttcttgc cattcactta tgccgttagt ttaattcggg
     4201 aaagtgttgg ggggctttat atgccaacgg tttggatcga tatgagtgtt cttgccggat
     4261 ttgccattct ctttatcacg ctaggcattt tactcaaaaa accactagac aaagtagtac
     4321 ccaagctatc agaaaaagca aaacgaagca agctcatcca ttaatatttt ttctgtgata
     4381 taattacgag cgtagagggg gcagactttg tggcaaacaa atttaaaaca ttagataaga
     4441 tggtgtataa tctacttctt gaaaaaatca aaaacggcga gttagtggcg aatgaacatt
     4501 tagcagaaga aaagttggct agggaattcg ttgttagccg gtcgccaata agaaaagcca
     4561 ttgcaacgct tactgctcaa ggtattgtta gttatcacga aaatagcggt gctgttttaa
     4621 atgattgtat tgttgattcg gatcgctatg tgcaattgat ggaaaccatt gaaatttttg
     4681 ttgatgcagc aattgcgaaa gcagctcatt tcggttatga aatggatttg gagaaattgt
     4741 atgctcgtat gcaagagatg gagcgccttt cgtatctaac tgacatagaa aattattatg
     4801 atgcacatca tcgctttatt ctttgtttaa tcagttttgc ggaaaatccc tatcaagtcc
     4861 gtatcgtcaa gcaaattttc ttccaaatga ttcatttttc agatggaatt aatatgttta
     4921 aatccgtcga aattagagaa tggactaaca agaaaagtaa ccaaatttgt gagttgctcg
     4981 cagaagagga aactgaatta gccaggaaaa caattaagtc tatgtttgcg gaattaacga
     5041 ttcaagccta cagataaaaa gagctgtcac ttttgtgaca gctctttttg atataaataa
     5101 aaaccgtttt tcttaccaga aaattgaaaa ccatagcgga catacatttg attgagcgtc
     5161 tcattgcttt cgatgcaatc taaccgaatg aaaggaacgg acatttcgat acctaatttt
     5221 tccgcaaaat aaatcatttg tttacttaat gaaattccgg aaaatgctcg agaaaccata
     5281 atccggtgta aataatatgc tttatcaatt gccaaatctt cccataaatc cgtatcccaa
     5341 tcacttggcg tttttcgaat aatcattgcg cccgcaagtg cacccgcttc cgtttcaaaa
     5401 agggcaactt caccaagttc aatacgttgt tcgatattat ggacatcaaa accatgcaaa
     5461 atatcgctcc actgggttga ccccgactct tttaaccagc gagctgtatc tatcattaag
     5521 tcatttattt tcagacggtc cgttggcgca gcaaagcgga ctagaaattc cagtccgcca
     5581 gccgtaattt tattttggtt cattgttatc ttttggagct tccggtgttt cgggtgcctc
     5641 aggagtttca ggaacttccg gcgtttctgg tgtttcagga gcctcaggag cttctggtac
     5701 tacaggcgtt tcgggttctt ttgttgcctc tggtccgaag ccttctggat gtgtatcttc
     5761 agcaaatgga tcagcttctg ttgttccaaa tggatttact tcttcttcca cgatgaccgt
     5821 ttcttctgta aaagtgcctt ctgttgctgc gtataaatca tcgtagaaca cagcgataga
     5881 agtgattaga taaggataaa cataaagcga aataccaaga gtaattaacc acgatgctaa
     5941 gattaacacg agtccaccaa acgtagcacc ggcagcaaga gctgaaagta cttcagcagg
     6001 atcagctgta taagatgtag tagccattcc gccagcaacg ataaccgtac ctgcaatcgc
     6061 aacagcaaga ggaattaaat accataaaag gaatgtaaga gatagtccaa aaagtctacc
     6121 tttgtgtcca ttcatcatgt ggcggctttc tgtaatagca tctagcgcag aaatatttgg
     6181 gttatctcgt aagataaaga atgtttgtga ataagagtaa gttttaataa ttcctggtac
     6241 gattaagagt aagctccata agaatgtgaa aatagagatt agtaagtaag ctaagaccgt
     6301 acgtccaaat tgtttaaaac cactaaacat ataagcaaca tctggttgtt cacggcggct
     6361 aattgctagg tacacccaag caaccccagt ataaagtggt ccagttagta ggaatattgc
     6421 aatccaacca atgactggga tccaaccaat taatcctcca ccaacagttt cgattagcca
     6481 agcaagtaca aatattccaa tggcaattcc ccagttgcca cgaagcgact cttttgctgt
     6541 ctgt
//
LOCUS       DABQVC010000161         6531 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.161,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000161 DABQVC010000000
VERSION     DABQVC010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6531
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.161"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            31..501
                     /locus_tag="IBJ56_002267"
     CDS             31..501
                     /locus_tag="IBJ56_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002686462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB-like nuclease domain-containing protein"
                     /protein_id="HAM3418514.1"
                     /translation="MHYTKLQANNYNPNTVPATELKLLEKSIWEDGFTQPIVCYPLED
                     SDKYEIIDGFHRYTIMRTSKRIRERENEFLPVVILEKDTVNRMASTIRHNRARGFHNV
                     ELMSNIVSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLDKEFSHTSD"
     gene            523..1254
                     /locus_tag="IBJ56_002268"
     CDS             523..1254
                     /locus_tag="IBJ56_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAM3418515.1"
                     /translation="MKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQK
                     TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAI
                     EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDE
                     TGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAP
                     ELKDLPEMQDEYRRPMMLLISATKQ"
     gene            complement(1303..1542)
                     /locus_tag="IBJ56_002269"
     CDS             complement(1303..1542)
                     /locus_tag="IBJ56_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HAM3418516.1"
                     /translation="MWIYILVGIICLLAGLAGGFFIARRYMMSYLKNNPPINEQMLQM
                     MMAQMGQKPSQKKINQMMSAMNKQQEKEKPKKTKK"
     gene            complement(1763..3757)
                     /gene="tkt"
                     /locus_tag="IBJ56_002270"
     CDS             complement(1763..3757)
                     /gene="tkt"
                     /locus_tag="IBJ56_002270"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAM3418517.1"
                     /translation="MFDNTDSLAVNTIRTLSMDAIQKANSGHPGLPMGAAPMAYALWS
                     RVLNTNPKNSHWFNRDRFVLSAGHGSMLLYSLLHLSGFKLELEDLKNFRQWESKTPGH
                     PEYRYTDGVDATTGPLGQGIAMAVGMAMAERHLEAKYNKDGFPVVDHYTYALCGDGDL
                     MEGVASEAASYAGHQQLGRLVVLYDSNDISLDGDLDKSFSENVKQRFEAYGWEHLLVK
                     DGNDTAEILAAIEKAKQNTSQPTMIEVKTVIGFGAPNAGTSKVHGAPLGDEGILEAKK
                     AYGWNYEEKFFVPEEVTARFKETIGERGEKAETAWNELFASYKAEYPELAKQLEDSLN
                     NKLPADWDEDLPVYDDSKALASRASSGEVINALAGKIPTIFGGSADLAGSNNTTIKTD
                     GEFTKATPAERNIWFGVREFAMGAALNGMALHGGLQVYGGTFFVFSDYVRAAIRLSAI
                     QHLPVTYVMTHDSIAVGEDGPTHEPIEQLASLRAMPGLSVIRPADGNEVVEAWKLAIT
                     STSTPHVLVLTRQGLPTLPNSAKLTAEGVKKGAYVISPAKGDVPEAIILASGSEVNLA
                     IEAQKELQAQGTDVSVVSVPSFDLFEQQSAEYKESVLPNAVRKRVAVEMGASFGWERY
                     VGLDGKVIGIDKFGASAPGETVIKNYGFTVENVVNTVKSL"
     gene            complement(3904..4131)
                     /locus_tag="IBJ56_002271"
     CDS             complement(3904..4131)
                     /locus_tag="IBJ56_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HAM3418518.1"
                     /translation="MLEKAKIDRINELSKKKKAGTLTATEKVEQDKLRKEYIKSFRTH
                     MKGTIENTTIIDPNGTDVTPHKVKQLRKNKH"
     gene            complement(4225..4554)
                     /gene="yneA"
                     /locus_tag="IBJ56_002272"
     CDS             complement(4225..4554)
                     /gene="yneA"
                     /locus_tag="IBJ56_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division suppressor protein YneA"
                     /protein_id="HAM3418519.1"
                     /translation="MTMKLIWDKFYVSIIFVLTCIVLGIILMCTVVGGGNDYSEVNVS
                     EGDSLWALADQYAGKSDMAKADFVSWVEKENNLADGHVEAGESVVIPVHKTKLIKSDS
                     TIQLANQ"
     gene            4711..5325
                     /gene="lexA"
                     /locus_tag="IBJ56_002273"
     CDS             4711..5325
                     /gene="lexA"
                     /locus_tag="IBJ56_002273"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HAM3418520.1"
                     /translation="MKISKRQQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHG
                     HLARLEGKGLIRRDPTKPRAIEILSLEDEAETPNVVNIPIIGKVTAGMPITAIENIDE
                     YFPLPEYMAAGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE
                     ATCKRFYKEANHFRLQPENDALEPILLNNVTILGKVIGLYRDIR"
     gene            5356..5880
                     /locus_tag="IBJ56_002274"
     CDS             5356..5880
                     /locus_tag="IBJ56_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418521.1"
                     /translation="MIYFETERLIARDYLTNDYLPFSQMNADEQVMKYFPARLTQNES
                     NAFLDRIQEELKSLGYGLFAIEVKSTGEFIGFTGFHEATFEATFTPCTEIGWRLKHSA
                     WNQGYATEAALGALALAEEINTINEIYSFTAALNKPSENVMKKIHLTKIATFEHPALV
                     NGDPLKPHVLYKKA"
     gene            complement(5914..>6531)
                     /locus_tag="IBJ56_002275"
     CDS             complement(5914..>6531)
                     /locus_tag="IBJ56_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenical efflux pump membrane protein ArsB"
                     /protein_id="HAM3418522.1"
                     /translation="RVSWGILIILVAGYFLSSFLDIPVSFIALLVAVIFLLVSAKSHA
                     VSTKAILKGAPWNIVFFSVGMYVVVYGLQNVGITKLLSEAITYVAHFGLFAGTVGMGF
                     IAAILSSVMNNLPTVMINALAIDHTSFTGVMKEALVYANVIGSDLGPKITPIGSLATL
                     LWLHVLAQKGIKISWGSYFKIGIVITIPVLFITLVGLYFSLLIWN"
BASE COUNT         2102 a         1315 c         1098 g         2016 t
ORIGIN      
        1 tacaagagcc cagtatatag cgttactccc attcactaca caaaattaca agcaaataat
       61 tataatccca acactgtccc cgcaaccgaa ctcaaactac ttgaaaaatc aatttgggaa
      121 gatgggttta cgcaaccaat tgtttgttat cccttggaag acagcgataa atatgaaata
      181 atagatgggt tccaccgtta cactatcatg agaacctcta aacgaattcg agaacgagaa
      241 aatgaattct taccagtagt catcttagaa aaggacaccg tgaatcgaat ggcctctaca
      301 atacgtcata atcgtgcgcg cggatttcat aatgtcgaat taatgtccaa cattgttagt
      361 gaacttgtag atagcgggat gtccgatagt tggattatga aaaatattgg aatggatgct
      421 aatgaaatct tacgcttaaa acaagtgagc ggacttgctc acctcttctt agataaagaa
      481 ttcagtcaca catctgatta attgatgaaa agaggtttaa taatgaaaga aaataaatac
      541 gatgacaaac attttttcga acaatatagc caaatgcctc gctcgaaaga aggattaaaa
      601 gcagctggtg aatggcatga acttaaaaaa atgcttcctg attttaacca gaaaacagtc
      661 cttgatttag ggtgtggctt tggatggcac tgtatctatg cagctgaaca tggtgcaaaa
      721 aaagtacttg gtatcgattt atccgaaaga atgcttactg aagctaaacg aaaaactaca
      781 tcgccagtgg tttgttacga gcaaaaagcc atagaagata tagctattga accagatgca
      841 tacaatgttg ttctgagctc ccttgcactt cattacattg cttcttttga cgacatttgt
      901 aagaaagtct atattaacct aaaatctagt gggtctttca ttttctctgt agaacatccg
      961 gtatttacgg cagatggaag acaagattgg tatacggatg aaacaggtaa caaattacat
     1021 tggcccgttg accgatattt taatgaatct atgcgaacaa gccattttct tggagaagat
     1081 gtccaaaagt atcaccgaac agttactact tacatccaaa cattactgaa aaatggcttt
     1141 caaattaata gtgttatcga accggaacca gctcctgaat taaaagattt acccgaaatg
     1201 caagacgaat accgccgccc aatgatgcta ctcatttcag caacgaaaca ataataaaaa
     1261 accccttcta aatcaataga aggggtttac tttgttaaaa tattatttct tagttttctt
     1321 tggtttttct ttttcttgct gtttgttcat cgcactcatc atttgattga ttttcttttg
     1381 tgatggtttt tgacccattt gtgccatcat catttgtaac atttgttcgt taattggcgg
     1441 attgtttttt aaatagctca tcatgtaacg tcttgcaata aagaatcctc ccgcaagacc
     1501 agctagtaaa caaataatgc cgacaagaat gtaaatccac atagtctctt ttctcctcct
     1561 tgaaacaaaa tcctctttta ttgtacttga tttatattaa acagacaata cttttcaaga
     1621 aaacttatca tctagatcaa tttatcaata aaagctgcaa acaacctcgt aattatacca
     1681 ttaatggtac tacggcgcaa tctaaaaaaa gcataaaaaa acagaccgct ctagaaaaat
     1741 tagcaacggt ctgattgttt aattaaagtg attttactgt attaactacg ttttcaacag
     1801 taaagccgta attcttaata actgtttcac ctggagcaga agcaccaaat ttgtcaattc
     1861 cgataacttt accatctaaa ccaacataac gttcccatcc aaagctagcg cccatctcta
     1921 ctgctacacg ttttctaaca gcattcggta atacactttc tttgtactca gcagattgtt
     1981 gctcgaatag atcaaatgat ggcacactga caactgatac atctgttcct tgagcttgaa
     2041 gttctttttg cgcttcaata gctaagttaa cttcagaacc actcgctagg atgattgctt
     2101 ctggcacgtc acctttagct ggggaaataa cataagcacc ttttttaacg ccttctgcag
     2161 ttaatttagc agaatttggt agtgttggta ggccttgacg agtaagaaca agtacatgcg
     2221 gtgtagatgt agaagtgata gcaagtttcc aagcctccac aacttcattt ccatcagcag
     2281 gacgaataac agaaagccct ggcattgcac gtaagcttgc aagttgttcg attggctcat
     2341 gtgttgggcc atcttcccca actgcaatac tatcatgcgt cattacatag gttactggta
     2401 aatgttgaat agctgataaa cgaatagcag cacgtacata gtcagagaat acgaagaatg
     2461 taccaccgta tacttgtaat ccgccgtgaa gtgccatacc atttaatgca gcgcccatcg
     2521 caaattcacg aacaccaaac caaatgtttc tttcagctgg agtcgctttt gtaaattcac
     2581 cgtctgtttt aattgttgta ttattcgaac ctgcaaggtc agcagatccg ccaaaaatag
     2641 ttgggatttt tccagctaac gcattgataa cttctccact ggaagcacgg ctagcaagtg
     2701 cttttgaatc atcatatact ggaagatcct catcccaatc agctggtaac ttgttgttca
     2761 agctatcttc taattgtttc gcaagctctg gatattctgc tttataggaa gcaaataact
     2821 cattccaagc tgtttctgct ttttcaccac gttcgccaat tgtttcttta aagcgagcag
     2881 taacttcttc aggaacaaag aatttctctt cgtagttcca accataagct tttttcgctt
     2941 ctaaaatacc ttcatcgcct agtggagcac cgtgaacttt acttgtaccg gcatttggag
     3001 caccaaaacc gataacagtt ttcacttcaa tcatagtagg ttgagaagtg ttttgtttcg
     3061 ctttttcgat tgctgctaaa atttcagctg tatcattacc gtcttttact aataaatgtt
     3121 cccagccata agcttcaaag cgttgtttta cattttcaga gaaagatttg tctaaatcac
     3181 catcaagaga gatatcattg gaatcataga gaacaactaa tcttcctaat tgttgatgac
     3241 ctgcataaga agccgcttct gaagcaacac cttccattaa gtcaccatct ccgcatagtg
     3301 cataagtata atgatccact accgggaaac catctttatt atatttcgct tctaaatgtc
     3361 tttctgccat agccatacca acagccatcg caataccttg accaagtgga ccagtagttg
     3421 cgtctacacc atctgtataa cgatattctg ggtgaccagg agttttactt tcccattgac
     3481 ggaaattttt aagatcttct aattctaatt tgaatccact taagtgtaat aaactatata
     3541 aaagcattga gccgtgtcca gcagaaagta caaaacgatc tcggttaaac caatgtgaat
     3601 tcttagggtt agtatttaat acacgcgacc aaagtgcgta agccattggt gctgctccca
     3661 ttggtaatcc tggatgacca gaatttgctt tttgaattgc gtccattgat aatgtacgaa
     3721 ttgtattcac tgctaaacta tctgtgttat cgaacaaatg aaacatcctc tcttcaatat
     3781 aattttaact acttttaata ataagcctaa aaagcaatta acacaactaa taattgcttt
     3841 aaattgctta attgattggt atttttgttc atttgctcat taatgtttat ttggtactaa
     3901 ttattagtgc ttattttttc taagttgttt cactttatgc ggcgttacat ctgttccatt
     3961 tgggtcgatt atcgttgtat tttctattgt ccccttcata tgcgtacgaa aagacttgat
     4021 gtattctttt cttaatttat cttgctccac tttttctgta gcagttaatg ttccggcttt
     4081 tttcttttta gaaagctcat taatacgatc tattttagct ttttctagca tcgttattct
     4141 ccttttcttc tatagaataa aaataagaaa gcagcataat cgctactctc taatattata
     4201 tcataaacgg ccactaaatc gaccttactg gtttgctagt tgaatcgtac tatcactctt
     4261 tattaatttt gttttgtgta caggaataac tactgattct cctgcttcca catgaccgtc
     4321 agctaaatta ttttcttttt ctacccagct aacaaaatct gcttttgcca tatcactttt
     4381 ccctgcatat tgatctgcta atgcccataa agaatcccct tcacttacgt tcacttctga
     4441 atagtcgttt cccccgccaa ctacagtaca cattaaaatg attcctagta cgatgcaagt
     4501 aagtacaaat ataatagaaa cataaaattt atcccaaatt aatttcatag tcattaataa
     4561 tccctccaaa aagaatgtat gttcgctttt ctatattata gaacagccgt tcgtgtatgt
     4621 caataaaaaa acgaaccttt gtttgcatat tggtttttct tttgctatac ttgaattata
     4681 aaataaccat taaatcaatg aggtgaaacc atgaaaatat ctaaacgcca acaagatata
     4741 tatgaattta taaaatcaga agtaaaagaa aaaggttatc caccttccgt ccgcgaaatt
     4801 ggtgaagcag ttggccttgc ttccagctct actgttcatg gacatcttgc tcgccttgaa
     4861 ggtaaaggct taattagacg ggacccaaca aagcctcgtg cgattgaaat attatcttta
     4921 gaagacgaag cagagacacc caatgttgta aatattccta ttatcgggaa agtaactgct
     4981 ggaatgccca tcactgcaat tgagaacatt gatgaatatt tcccactacc agaatacatg
     5041 gcagctggcg aaaccaatgt cttcatgtta gaaatcgacg gcgaaagtat gattaatgcc
     5101 ggaatccttg atggtgataa agtaatcgtt agacaacaaa gttctgcaat caatggcgaa
     5161 atcgttgtag cgatgacaga tgaaaatgaa gctacatgta aacgattcta caaagaagct
     5221 aatcatttta gattacaacc cgaaaacgat gctttggagc ctatcctttt aaacaacgta
     5281 acaattctag gaaaagtaat cggactttat cgagatattc gctaatttta ttcgtttgaa
     5341 caggtggttg agaacatgat ttattttgaa actgaacggc ttattgcaag agattattta
     5401 acaaacgatt atcttccttt tagtcaaatg aatgcagatg agcaagtaat gaaatacttc
     5461 ccagccagat taactcaaaa cgaaagtaat gcatttcttg ataggattca agaagaatta
     5521 aagtcacttg gatatggtct ctttgctatt gaagttaaat cgactggcga attcatcggt
     5581 tttactggat ttcatgaggc tacttttgaa gctacattca ctccatgcac ggagataggt
     5641 tggcgattaa aacatagcgc ttggaaccaa ggctatgcca ccgaagccgc acttggcgcg
     5701 ttagcacttg ctgaagaaat caacactatt aacgaaatat acagttttac cgccgcactc
     5761 aataaacctt cagaaaatgt catgaaaaaa atccatttaa caaaaatagc tacttttgaa
     5821 catcccgctt tagtaaatgg cgatccacta aagccccatg ttctttataa gaaggcataa
     5881 taaaaccccc tgtacattct ggtacagggg gttttaattc caaataagca gtgaaaaata
     5941 tagtccgacg agcgttatga ataaaactgg aatagtaatc acaatgccaa ttttgaaata
     6001 agagccccag cttatcttta tccctttctg cgctagaaca tgtagccaaa gtaaagttgc
     6061 tagcgagcca attggtgtta ttttcggacc taaatcagaa ccaatgacat ttgcatagac
     6121 taacgcttct ttcatcacgc ctgtaaatga cgtatgatcg attgcaagtg catttatcat
     6181 tactgttggc aaattattca tgacagaaga cagtattgca gcaataaatc ccattccaac
     6241 tgttcccgca aataaaccaa agtgcgcaac atatgtaatt gcttctgata ataattttgt
     6301 gataccgaca ttttgcaaac catatacaac tacatacata ccaaccgaga aaaacacaat
     6361 attccaaggt gctcctttta aaatagcttt tgtcgagacc gcatgacttt ttgcactgac
     6421 taacaaaaag ataacagcaa ctagcaaggc aataaatgac actggaatgt ctaaaaaact
     6481 actcaaaaaa tagcctgcta caaggatgat aagtattccc caagaaacac g
//
LOCUS       DABQVC010000162         6460 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.162,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000162 DABQVC010000000
VERSION     DABQVC010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6460
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.162"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1641
                     /locus_tag="IBJ56_002276"
     CDS             <1..1641
                     /locus_tag="IBJ56_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418523.1"
                     /translation="FASVITTVAGLVVPLFTKNLIDGFSIASLDVKMIALIVLAFVLQ
                     AITNGFSIFLLNYMGQKVVATIRERLWKKIVHLPVSYFDNTKTGEMVSRMVNDTVVVK
                     ELIADHFPQFVTGIISVVGAIIILFFMDWKMTLIILVAVPITALVVAPLGQKMFKISK
                     GLQNETADFTGSISQTLSEARLVKASNAETLETEAGHQGINRLFGFGIREAKVVAVLG
                     PLIFFVVMGVIVGIIGYGGIRVSAGTMTTGTLIAFLLYLFQIIVPVTSFATFFAQLQK
                     AKGATERIADILNETEEDFDAGKKVDVSGKTIRASDISFSYNEGEPILKHVSFDTKPG
                     EVIAFAGPSGGGKSTLFAILERFYQPKTGEILVGDIPLSEISINSWRTQIGYVSQESA
                     MLSGTIRDNLCYGLDREITEDELWNVAKLAYADGFISELPDKMATEVGERGVKLSGGQ
                     RQRIAIARAFLRNPNILMLDEATASLDSQSEQIVQQALANLMEGRTTFVIAHRLSTIV
                     NADQILFIEHGEITGRGTHSELVASHPLYASFAEQQLK"
     gene            complement(1695..1946)
                     /locus_tag="IBJ56_002277"
     CDS             complement(1695..1946)
                     /locus_tag="IBJ56_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HAM3418524.1"
                     /translation="MANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWEN
                     DSSVCLSELYALEGAVQGIRWHGLDEAKKIELKKFHQSL"
     gene            complement(1966..3249)
                     /gene="serS"
                     /locus_tag="IBJ56_002278"
     CDS             complement(1966..3249)
                     /gene="serS"
                     /locus_tag="IBJ56_002278"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HAM3418525.1"
                     /translation="MLDVKLLRNNFDEVKQKLQNRGEDLGEFEKFGELDKRRRTLIVE
                     TEALKSQRNEVSQEIAKLKREKQDADAKIEEMRVVGDRIKTLDIELREIDEKLDMILM
                     SIPNIPHESTPVGESEDDNVEIRKWGEVREFDFEPKAHWDLGTDLDILDFENAAKVTG
                     SRFVFYKKLGARLERALINFMMDLHSNEHGYEEMLPPYMVNRASMTGTGQLPKFEEDA
                     FLIEAEDYFLIPTAEVPVTNYHREDILKAEDLPRKYTAFSACFRSEAGSAGRDTRGLI
                     RQHQFNKVELVQFVKPEDSYAALEKLTGNAEEVLRRLELPYRVLSMCTADLGFTAAKK
                     YDLEVWIPSYNSYREISSCSNFESFQARRANIRFRREPGSKPEYVHTLNGSGLALGRT
                     VAAILENYQDADGSVRIPKVLQGYMGGIEKIELPK"
     gene            complement(3583..4002)
                     /locus_tag="IBJ56_002279"
     CDS             complement(3583..4002)
                     /locus_tag="IBJ56_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HAM3418526.1"
                     /translation="MKNELEDKILAILEQHQVGVLTSVQGDYPHARYMTFLHDGLTLY
                     TPSGKELPKTEEVRRNPHVSVLIGYESLGSAFLEINGLASLEEDESIKERIWENISKE
                     WFQGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG"
     gene            4132..4704
                     /locus_tag="IBJ56_002280"
     CDS             4132..4704
                     /locus_tag="IBJ56_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HAM3418527.1"
                     /translation="MILIIDHNDSFTYNLYQYFLELQEEVQVVSATNFSLEIFQQLVP
                     EMVVLSPGPGSPEDFPVSLALLGKIQVPILGICLGHQMIAHFFGAKVVPAKVPVHGKT
                     SIISHTGEGLFAELAPKFQVTRYHSLVIDPATVPANLKVTALTEDGVIMGLAHVSKPI
                     HSVQFHPEAILSENGHAILENFIRLGRNVK"
     gene            4701..6407
                     /gene="pabB"
                     /locus_tag="IBJ56_002281"
     CDS             4701..6407
                     /gene="pabB"
                     /locus_tag="IBJ56_002281"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HAM3418528.1"
                     /translation="MSLLRFDFEGDTKIFENPLYELVTHDLAEVLPIMKAAEEAQKSG
                     KYVAGFVSYEAAPAFRSNLKTKKPSGNMPLVWFGVYDNFNVTATETPDSSPLSFKMNT
                     SFPEYAEKIEQIKAEIAAGNTYQINYTVRLQSDVPNSFSSQATYETLQQIGKANYTAL
                     LSTSDFEIISASPELFFKWKENLLTTRPMKGTIRRGITEQADLEAHDWLKNDPKNRAE
                     NVMIVDLLRNDLGMIAVPGSVKVPKLMTLEPYPTVWQMTSTVTAETPPETDLTAVFKA
                     LFPCGSITGAPKVRTMEIISELEDSPRGVYCGAIGFLEPNGNAIFNVPIRTIAIADNK
                     ATYGVGGGIVWDSEAASEFSEIHAKSAILEKTTKFSLIECLRIENGELFRTEYHLKRL
                     QTSADFFGIPFNREETEKLWTKTAQKNTTDTYKMRFLLHPDGAHDLELTRIDTKNKRL
                     TAQLADKPVPSNDLFLYHKTTHRKVYENLKNTQTEETLLWNERGELTEFINGNIVLGI
                     NGCFFTPPVTSGLLSGTMRAELLAKNKISEKTLAKKDLLEADYVWLINSVRGFIEVEI
                     KQ"
BASE COUNT         1894 a         1371 c         1232 g         1963 t
ORIGIN      
        1 tttgccagtg tgataactac agttgccggc cttgttgtgc cactttttac aaagaactta
       61 attgatggct tttcaatagc ttcactcgat gtaaaaatga ttgctttaat tgtgttggca
      121 tttgttttac aagctataac gaatggcttc tcgattttct tacttaacta catgggtcag
      181 aaagtcgttg caacgattcg cgaacgttta tggaagaaaa ttgtgcattt accggtttct
      241 tactttgata atacaaagac tggggaaatg gtaagtcgca tggtaaatga tacagtggta
      301 gtgaaggagc tgattgccga ccattttccg caatttgtaa cggggataat ttctgttgtc
      361 ggggcgatta ttattttgtt cttcatggac tggaaaatga cactcattat tttagtggcc
      421 gttccgatta ctgcgctagt tgttgcacca cttggtcaga aaatgtttaa aatatctaaa
      481 ggtcttcaaa atgaaacggc tgacttcact ggttccatta gccaaacgct atcagaagct
      541 aggctcgtaa aggcttcgaa tgcggaaaca ctagaaaccg aggctggcca tcaaggaatt
      601 aatcgcctat ttggctttgg tattcgtgag gcgaaagttg ttgctgtgct tggaccgcta
      661 attttctttg ttgtcatggg ggttatcgtt ggcatcatcg gttacggtgg gattcgtgtt
      721 tcagctggaa cgatgactac tggtaccctc atcgcctttt tgctctatct gttccaaatt
      781 atcgttcctg tcacttcttt cgcaacattc ttcgcccaac ttcaaaaagc aaaaggcgca
      841 acagaacgaa ttgcggatat tttgaatgaa acagaagaag atttcgacgc tggtaaaaaa
      901 gtagatgtga gcggaaaaac cattcgcgcg tctgatattt ccttctccta taatgaaggt
      961 gagcctattc taaaacatgt ttcttttgat acaaaacccg gagaagttat cgcattcgct
     1021 ggtccaagcg gtggaggtaa atcaacctta tttgcgattt tagagcgttt ttatcaaccg
     1081 aaaacgggag aaattttagt aggcgatatt cccctttccg agatttcgat caattcctgg
     1141 cgaacacaaa ttggttatgt ctcccaagaa agtgcgatgc tttctggtac aattcgcgat
     1201 aatctttgtt atggtttgga ccgagaaatt acggaagatg agctatggaa tgtagcaaaa
     1261 ctagcttatg ctgacggctt tatttccgaa cttcctgaca aaatggcgac cgaagtcggc
     1321 gaacgtggcg tgaagctctc aggtggtcaa agacagcgaa ttgccattgc tcgagcattc
     1381 ttgcgtaatc ctaatatcct tatgttagat gaggctacag ctagtttaga tagccaatcc
     1441 gagcaaatcg ttcaacaagc tttggcaaac ttaatggaag gtcgaactac ttttgttatc
     1501 gctcatcgcc tttctactat cgtcaatgcc gaccaaattc tctttattga acacggggaa
     1561 ataactggtc gtggcacaca tagtgaatta gttgcttccc atccacttta cgcttccttt
     1621 gcagaacaac aattaaaata actatttccc gggaaataaa aaaacgacga tgcgaatatg
     1681 catcgtcgct ttttctataa ggattgatga aactttttga gttcgatttt ctttgcttcg
     1741 tctaaaccat gccacctgat gccttgaacg gctccctcaa gcgcatatag ttcacttaga
     1801 caaacgcttg aatcattttc ccaaatacgt aaaaaggctt ctttgcttcc aacatctttt
     1861 agctcgacgg gagtttttat tcccgctttg attaaatcct gctccagtac tttgccaatg
     1921 tttggtaatt cgctaaggtt cgccattaca gttccttctt ccatattatt ttggtaattc
     1981 tattttctcg ataccgccca tgtagccttg caatactttc ggaatgcgta cagaaccatc
     2041 tgcatcttgg tagttttcca aaatagcagc gactgtacga cctagtgcta acccggaacc
     2101 atttaatgta tgcacgtatt ccggtttgct ccctggttca cggcggaaac gaatgttagc
     2161 gcgtcttgct tggaagcttt caaaattact gcaagaagaa atctcacggt aagaattata
     2221 gcttggaatc caaacttcta aatcatattt tttagcagca gtgaagccta aatcagccgt
     2281 acacatgctt aatacgcgat atggtaattc taggcgacgc aatacttctt ctgcgtttcc
     2341 agttaatttt tcaagcgccg cgtaggaatc ttctggttta acaaattgaa ctaattccac
     2401 tttgttaaat tgatgctggc gaattaagcc gcgcgtatca cgaccagcag atcccgcttc
     2461 agaacggaaa catgcgctaa atgctgtata ttttcttggt aaatcttctg cttttaaaat
     2521 gtcttcgcgg tggtagtttg ttactggtac ttccgctgtt ggaataagga aataatcttc
     2581 tgcttcaatt aagaaagcat cttcttcaaa tttcggcaat tgaccagttc cagtcatgct
     2641 cgcacggttc accatgtacg gtggtaacat ttcttcatag ccatgttcat tcgagtgcaa
     2701 gtccatcata aagttaatta gcgcccgttc cagtcttgca cctaattttt tataaaagac
     2761 aaaacggcta ccagttactt tcgcagcatt ttcaaaatca agaatatcta agtctgttcc
     2821 taagtcccag tgagcttttg gttcaaaatc aaattcgcgt acttcgcccc acttgcgaat
     2881 ttccacgtta tcgtcttccg attcaccaac cggagtagac tcatgcggaa tatttggaat
     2941 cgacattaaa atcatatcta acttctcgtc gatttctctt agctcgatgt ctaatgtttt
     3001 aatacgatca ccaacgacac gcatctcttc aattttagca tctgcgtctt gtttttcgcg
     3061 ttttaattta gcgatttctt gagacacttc attacgctga cttttcagcg cttctgtctc
     3121 cacgattagc gtacggcgac gtttatctaa ctcaccaaat ttctcgaatt caccaaggtc
     3181 ttccccgcga ttttgtaatt tctgctttac ttcatcaaaa ttattacgta acaatttaac
     3241 atctaacatg ctaactcctc ctttattttt tccatataaa aactcccgta ctttcccgaa
     3301 ttaacaggaa agggacgaga gttaaccgcg ttgccaccct tattgggact tcaaaaaatc
     3361 cccagcttca tttaggttta acggacccaa ccggaatgat ttactcgcaa aattatgctt
     3421 tccaccactc actccaagat ggattcataa ggaaacttca ccagttcaca ccacccactg
     3481 gctctcttta gaaattctgc ctcattacta cttcttgtct tcgcttttcg tattaattta
     3541 aagttattct atcgcatatc tgcttaaatt acaagcaaat ctttaaccga ttaaatcgag
     3601 cgtgtctgga ccgtcatcat cagaattcaa tattctaatt tgttcaggta caatttttat
     3661 aacgacaaag gacggtgaat cttcgccttg gaaccattct ttagaaatgt tttcccaaat
     3721 gcgttctttg attgattcat cttcttcaag agaagccaaa ccattaattt ctaaaaacgc
     3781 agaccctagg ctttcgtaac caattaaaac ggatacatgt gggtttctac gtacttcttc
     3841 tgtctttggt aattctttgc cagacggtgt gtaaagggtt aaaccatcgt gcagaaacgt
     3901 catatatcta gcatgaggat agtctccttg tacggatgtt aatacaccca cttgatgttg
     3961 ttccaaaatg gcaagaatct tatcttctag ttcatttttc atctcaaaca ccttcctttg
     4021 gttatttagt gtacctttcc actcggctcc cggctttaaa cattcgggct tgttatctct
     4081 ctagctattt gctataaaag agtataaccg ttttaactag ggggatttaa agtgatttta
     4141 atcatcgacc ataatgattc atttacatat aatttatacc aatatttttt agagcttcaa
     4201 gaggaggtac aggttgtttc tgctactaat ttttcgcttg aaatatttca acaactcgtt
     4261 cccgaaatgg tagttctatc accagggcca ggttcaccgg aagacttccc tgtaagtttg
     4321 gcactactag gtaaaattca agttcctatt cttggcattt gcctcggtca tcaaatgatt
     4381 gctcattttt tcggggcaaa agtggtgccg gcaaaagtcc cggttcacgg aaaaacaagt
     4441 atcatttcgc atactgggga agggttgttt gcagagcttg caccaaagtt ccaagtaacg
     4501 cgctaccatt ctttagttat tgatcctgcc acagttcccg ctaatttaaa agtaaccgca
     4561 ctgacagaag acggcgttat aatgggacta gctcacgtat caaaaccgat tcacagcgtc
     4621 cagttccacc cagaagcaat cctatctgaa aacggacatg caatacttga aaactttata
     4681 cgattaggga gaaatgttaa atgagcttat tacgatttga ttttgaaggc gacacaaaaa
     4741 tttttgaaaa tccactgtat gaactagtta cgcatgattt agcagaagtt cttcctataa
     4801 tgaaagcagc cgaagaagcc caaaaatcag gaaaatacgt cgccggtttt gtcagttatg
     4861 aggccgcgcc tgcttttcga agtaatttaa aaacaaaaaa accgagcgga aacatgcccc
     4921 tcgtctggtt tggcgtatac gataatttta acgttacagc taccgaaaca ccagattcct
     4981 cgccgctctc ttttaaaatg aatactagtt tccctgaata cgccgagaaa atagagcaaa
     5041 tcaaagctga aattgcagct ggaaatactt accaaataaa ctacaccgtg cgacttcaaa
     5101 gtgatgtgcc aaacagcttt tcttctcaag cgacttatga aacgttacag cagattggaa
     5161 aggcgaatta caccgcccta ctttcaacca gtgactttga gattatctcg gcttcacccg
     5221 agctcttttt taaatggaag gaaaatcttc taacgacacg cccgatgaaa ggtactattc
     5281 gccgcggaat aacggagcaa gcggacttag aagcacatga ttggctaaaa aacgatccta
     5341 aaaaccgtgc agaaaatgtg atgattgtcg atttactacg gaacgacctt gggatgattg
     5401 ctgtacccgg gagtgtcaag gttcctaagt taatgacgct agaaccttac ccaactgttt
     5461 ggcaaatgac ttcaaccgtt acagcagaaa cacctcctga gactgattta acagctgttt
     5521 ttaaagcact cttcccatgt ggctcaataa ctggtgcgcc taaagtacga acaatggaaa
     5581 ttatttcaga actagaagat tctcctcgtg gtgtttactg cggagcaatt ggctttttag
     5641 aacctaacgg aaatgcgatt ttcaatgtac cgattcgtac tattgctatc gcagacaaca
     5701 aggcaactta tggtgttggt ggcggtatcg tctgggattc ggaagccgct agcgaatttt
     5761 ccgaaatcca cgcaaaatca gctattttag aaaagacgac aaaattttct ttaattgaat
     5821 gtttgcgaat tgaaaatggt gagcttttcc gaaccgaata tcatttaaaa cgactacaaa
     5881 caagcgcaga ctttttcggt attcctttta atagggaaga aacagagaaa ctatggacca
     5941 aaactgcgca aaaaaatacg accgacacat acaaaatgcg ctttttatta catcctgatg
     6001 gcgcacatga tctagaacta acaagaattg atacaaaaaa caagcgacta acagcgcaac
     6061 ttgctgataa accagtccct tcgaatgatt tatttctcta tcataaaacg actcatcgaa
     6121 aggtctatga aaacttaaaa aatactcaaa ccgaggaaac actactttgg aatgaacggg
     6181 gtgaactgac agaatttatt aacgggaata tagttctagg tataaatggc tgttttttca
     6241 cgccaccagt aacttcaggt cttctttcag ggacaatgag agcagaacta ttagctaaaa
     6301 ataagatttc cgagaaaaca ctagcaaaaa aagacctttt agaagcggac tatgtgtggt
     6361 taattaatag cgtaagagga tttatagaag tagaaatcaa acaataaaag aatagaaatt
     6421 tcacaattta aaaatgaaat aatttgtcaa attcgccata
//
LOCUS       DABQVC010000163         6459 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.163,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000163 DABQVC010000000
VERSION     DABQVC010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6459
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.163"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(122..430)
                     /locus_tag="IBJ56_002282"
     CDS             complement(122..430)
                     /locus_tag="IBJ56_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HAM3418529.1"
                     /translation="MDEQLKENLMGALEQVIDPELGIDIVNIGLVYDVELDDDGLCTV
                     SMTLTTMGCPLAGILTEQVQMALSDIPEVKDTNVNLVWNPPWTKDRMSRYAKIALGIR
                     "
     gene            complement(495..1247)
                     /gene="yjfP"
                     /locus_tag="IBJ56_002283"
     CDS             complement(495..1247)
                     /gene="yjfP"
                     /locus_tag="IBJ56_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HAM3418530.1"
                     /translation="MIQVENEQIAGIPVLHISNSENADQMLPTIIFYHGFTSQKELYL
                     HYGYLLAQRGFRVVLPDAKLHGERLQGANPEDQATFFWDVIETNIIEFPLITNELIKA
                     GKTDANRIGVGGVSMGAITSLGLLGQYENIKVAVSLMGSAYYVDFAKELSKYALAQGL
                     TFPYDVDERILTLQKYDLTQNITKINNRPLLLWHGKKDDVVPFAYSEKLYQTLVEESL
                     ADNVQFIIDDNAKHKVSVEGMLQGVSFFEKFL"
     gene            1366..2211
                     /locus_tag="IBJ56_002284"
     CDS             1366..2211
                     /locus_tag="IBJ56_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3418531.1"
                     /translation="MNQPYELKEQTMSKKLIVLDLDGTTLRDDLTISSHTKKTLEKAR
                     MAGHEVMIATGRPYRISGSYYHELGLTTPIVNFNGAVYHHPRLTTFAEGYHHAIDLQV
                     VHELLDFSNGFSLDNIAAEVQDNVFLKERNNSVPETFHLGTENIVFGNIRDAIKSDAT
                     SLLFFGKIDQLDLISKHLDESLSGVISHHTWGASAWPAVEIIKFGIHKAIGVQAAAKT
                     LGFDRKDIIAFGDETNDLQMLDYAGVGVAMGNAAESVKNVANVVTASNQDDGIALYLE
                     ENLNL"
     gene            complement(2289..3191)
                     /locus_tag="IBJ56_002285"
     CDS             complement(2289..3191)
                     /locus_tag="IBJ56_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HAM3418532.1"
                     /translation="MSSKIVYKEYAKKTAIAIIAALLNAIGMNFFLIPAQVYAAGLNG
                     VAQLGSDMLRDSMNISISTGLLVLLLNIPVAILGWLKVGKSFTVFSFLTVAFMSFFLI
                     VIPEVQVSSDILLNAIFGALIASVGIGLALKFGISTGGLDIVAMYITIKTGRSFGKYF
                     LLLNGVIIIVAGFAYDWTFALYTLISLYVQSRVIDIIHTRHQKLTVMIMTQHSETVIK
                     AIHENMVRGITVVDAMGGYSKEDVAMLIMVITRYELYDITHIVGEFDSKAFINVMETS
                     SVFGDFRSEADQKLAMAMYKNKMM"
     gene            complement(3275..3637)
                     /locus_tag="IBJ56_002286"
     CDS             complement(3275..3637)
                     /locus_tag="IBJ56_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YisL family protein"
                     /protein_id="HAM3418533.1"
                     /translation="MWGYIHLISWVAIVVLTVTALLIYSKSTKSFTMLQMINRVFYIL
                     VILSGIMMVKYSIEQSWILAIFKILMGIIVIGVVEMLLSYRKQQKPTGMFLMIFVIVV
                     VITISLGFYLSGGYPLFN"
     gene            complement(3657..4505)
                     /locus_tag="IBJ56_002287"
     CDS             complement(3657..4505)
                     /locus_tag="IBJ56_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HAM3418534.1"
                     /translation="MKWLSYQHEGDFNYGILTPENKIIPAQTIFSNPPATLLDFIKEK
                     PLVPELKGIKGDIDLAEVEIQVPITPPNNIIAIGKNYYNHVLEMGSKEDVPEHILVFT
                     KSANSLLPHNGKIELHQNLTSQLDYEGELAVIIGEKVRDLSEQDALSAIFGFTILNDV
                     TARDLQKKHKQFYLGKSLDASCPMGPYVLENNGSKEVVFHIETKVNGEIRQSDSTDKC
                     IFNLARIISDLSKGHTLLPGDVIATGTPSGVGKGMTPPTFLQAGDVVEITIDKIGTLT
                     NKVRKS"
     gene            complement(4506..>6459)
                     /gene="addA"
                     /locus_tag="IBJ56_002288"
     CDS             complement(4506..>6459)
                     /gene="addA"
                     /locus_tag="IBJ56_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HAM3418535.1"
                     /translation="YRDIVILARAMTSAPDMEEAMKVQDIPFYANNNSGYFETTEVAT
                     MIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYKDTTVS
                     ETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRAL
                     YDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEF
                     PVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREM
                     IAEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYL
                     DWIGNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNI
                     KEHQPIPVKSPYKDEIQRYMNYEYQNEEATKIRAKQSVTELKRQFSLQDSWSDTTLLK
                     EFQKVSLDRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKEDLEQLLQTMREKDIL
                     TEAQLKAINIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVL
                     IQGVVDSMIEEEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAIS
                     GKKVDAAYLYFFDGQHICQINTKEGF"
BASE COUNT         1970 a         1294 c          984 g         2211 t
ORIGIN      
        1 cattttatta tctttataat cacttatcat ttcataattc atcgttttaa tcctctattc
       61 agtcatataa aaataacagg tataacgcaa aatacgtcct acctgcttat ttttatttaa
      121 ttcaacgtat accaagcgct atttttgcat agcgtgacat acgatcttta gtccaaggtg
      181 gattccaaac aagatttaca tttgtatctt tcacttctgg aatatcacta agtgccattt
      241 gtacttgctc agtcaaaata ccagcaagtg gacatcccat tgttgtaagc gtcattgata
      301 ctgtgcaaag gccgtcatca tctaattcaa catcgtatac aagaccaata ttcacaatat
      361 caattccaag ttctggatcg ataacttgtt ctagtgcgcc cattaaattt tctttcagtt
      421 gctcatccat gaagcatatg cctccttttt gccattttgt acatttattg tatcatatat
      481 gagaatgatt ttcattataa gaatttctcg aaaaagctta caccttgtag cattccttcg
      541 accgaaactt tgtgtttcgc attgtcgtcg atgataaatt gcacattatc tgccaagctt
      601 tcttctacta atgtttggta taacttttcg ctgtacgcaa aaggtaccac atcgtctttt
      661 ttgccatgcc aaagtaacaa tggtcggtta tttattttgg tgatattttg ggtcaaatca
      721 tatttttgta aagttaaaat tcgctcatcc acgtcatacg ggaaagttaa cccttgcgcc
      781 aatgcatatt tagataactc cttagcaaaa tcaacgtaat aagcacttcc cattaaactg
      841 accgctactt taatattttc atattgccca agaaggccaa gcgaagtaat agctcccatg
      901 gaaactccgc caactccaat acgattagca tccgtttttc cagctttaat taattcatta
      961 gtaattagag ggaattctat aatatttgtc tcaataacat cccaaaagaa tgtagcctga
     1021 tcttccggat tcgctccttg tagacgctca ccatgcaact ttgcatccgg caaaactact
     1081 cgaaagccac gctgcgcaag tagataacca taatgtaaat ataattcttt ttgagaagta
     1141 aatccatgat aaaaaataat cgttggtaac atttgatcag cattttcact attactaata
     1201 tgtaaaactg gtattcccgc aatttgttca ttttccactt gaatcattgt gaagcctcat
     1261 ttctattgag tttattaagc tactgtaaag gtcggaatca tttacaaatt tgtgataaac
     1321 gtctatcatt gatgtgtgcc cttattttag catgaagggg cagctttgaa ccaaccatat
     1381 gaattaaagg agcaaactat gtctaaaaaa ttaatcgtac tagatcttga tggaacaaca
     1441 cttagagatg atttaactat ctcctcccat acaaaaaaaa ctttagaaaa agcccgcatg
     1501 gccggtcacg aagtaatgat tgcaacggga cgcccatatc gaataagtgg ctcttattac
     1561 catgaactcg gattaacaac gccgattgta aatttcaacg gtgccgtcta tcaccatcct
     1621 agacttacta ccttcgctga gggctatcat catgccattg atttacaagt tgttcatgag
     1681 ttactcgatt tttcaaacgg cttttcatta gataatatcg cagcagaggt gcaagataat
     1741 gtcttcttaa aagaacgaaa caacagcgtt cctgaaacat tccacttagg cactgaaaac
     1801 attgtctttg gaaacatccg tgatgctatt aaatcagatg ctacttcttt actgtttttt
     1861 ggaaaaattg accaacttga tttaattagc aaacacttgg atgaatctct ttccggcgtt
     1921 atttctcacc atacatgggg agcatctgct tggccagccg ttgaaattat taaattcggt
     1981 attcataaag ctattggcgt gcaagcagcg gctaaaacac tcggctttga tcgtaaagat
     2041 atcattgcat ttggcgatga aactaatgat ttacaaatgc ttgattacgc tggtgttggg
     2101 gttgctatgg gaaatgctgc cgagtctgtt aaaaatgtgg caaacgtggt aactgcttct
     2161 aatcaagatg atggtatagc actctattta gaagaaaact taaatctata ataaaaagct
     2221 gcaagtaagg tcttacaaaa gttaggaatg ctaatttttg attcaagagc cattactttg
     2281 cagctttttt acatcatttt atttttatac atcgccattg ctaatttttg atctgcttct
     2341 gaacgaaaat caccgaatac gcttgaggtc tccataacat taataaatgc tttagagtca
     2401 aactcgccaa caatgtgcgt aatatcatat agttcataac gcgtaatcac cataatcagc
     2461 attgctacgt cttcttttga ataaccaccc atcgcatcca caactgtaat tcctcgtacc
     2521 atgttctcat ggattgcttt gattactgtt tcagagtgtt gcgtcattat catgacagtc
     2581 agcttctgat gtcttgtatg aataatgtca ataactctac tctgaacata taaagaaatg
     2641 agcgtgtaca gcgcaaatgt ccaatcatat gcaaaacctg caacaataat aataactcca
     2701 tttaaaagca agaaatattt cccaaaagaa cgccctgttt taatagtgat atacattgct
     2761 actatatcta atccgccagt agaaataccg aatttcaaag ccagaccaat acctacagat
     2821 gcaattaaag ccccaaaaat cgcattaagc aaaatatcac tagatacttg cacctctggg
     2881 ataacaatca agaaaaagga cataaaagca actgttaaaa aactaaaaac agtaaatgat
     2941 tttcctactt ttaaccaccc taaaatcgcc actggaatat ttaataacag aacaagtagt
     3001 cctgttgaaa tagaaatatt cattgaatct cgtaacatgt ctgaacctag ttgtgcaacc
     3061 ccatttaatc cagctgcata aacttgtgct ggtattaaaa agaagttcat gcctattgcg
     3121 tttaaaagtg ctgctattat tgcaatggcg gtttttttag catactcttt atatactatt
     3181 tttgaactca ttttcttctc tccttttttg gccctaacat aacataccaa ctttctagag
     3241 aaaagagaag tcttttttat tatttttttg atttttaatt aaataatgga tatccgcctg
     3301 ataaatagaa gcctaatgag atggtaatca ctacgacaat aacaaaaatc atcaaaaaca
     3361 ttcctgttgg tttttgttgt ttcctgtaac taagtagcat ctccactaca ccaattacaa
     3421 tgattcccat cagaatttta aatattgcca gaatccaact ttgctctatg ctgtatttga
     3481 ccatcataat tccactcaaa ataaccagaa tataaaaaac tcgattgatc atttgcaaca
     3541 ttgtaaaact ttttgtcgat ttcgaataaa tgagtaaagc tgtaaccgtt agtacaacaa
     3601 tagccaccca tgaaatcaaa tgaatataac cccacataat acatccctct ttcttattaa
     3661 gattttctta ctttgttagt cagtgtccca attttatcaa tagtaatttc gacaacatct
     3721 ccagcttgca gaaaagttgg aggtgtcatg cctttcccca caccacttgg agttcctgta
     3781 gctatcacat ccccaggcaa caatgtatgc ccttttgata aatcagaaat aatcctagct
     3841 aaattaaata tacatttatc tgtagagtca gactgtctta tttcaccgtt aaccttagtt
     3901 tcaatatgaa aaacaacttc tttacttcca ttgttttcca gcacatatgg tcccattgga
     3961 caactggcat caagactttt cccaaggtaa aattgtttat gttttttctg aagatcccga
     4021 gctgttacat catttaaaat agtaaatcca aatatggcgg ataatgcatc ttgctcggat
     4081 aaatctctta ccttttctcc tataattact gcgagttcac cttcataatc taattgacta
     4141 gttaggtttt gatgtagctc aattttgcca ttatgcggca ataaactatt agcacttttt
     4201 gtaaatacaa ggatatgttc tggaacgtct tctttgctcc ccatctctag cacatgatta
     4261 taataatttt tcccaattgc aataatatta tttggtgggg tgataggaac ttggatttct
     4321 acttcagcta aatcaatatc ccctttgatt ccttttagtt cagggacaag cggcttttct
     4381 ttgataaagt ctaaaagagt agcaggtgga ttcgaaaaaa ttgtttgtgc agggataatt
     4441 ttattttcag gtgttaaaat gccataatta aaatcgccct catgctgata actcaaccat
     4501 ttcatttaaa aaccttcctt tgtgtttatt tgacatatat gttgtccatc gaagaaatat
     4561 aaataagctg catcaacttt tttaccactt atcgcttgaa tcgcttttgc ataaagtttg
     4621 atttgaatat gatatcgttc tttcattatt ttttcagcag cttcccaatt agaataccta
     4681 ccctctattt tatctgtttt atagtcaatc aaagtaattg tttcttcctc ttcaatcatg
     4741 ctatctacaa caccttggat aagtacgcgt tcgtctatat caactttttc gtataactca
     4801 gatacaggaa gtaaataact aaatggcact tcacgtttta ctaaatcttt tttctgcaac
     4861 atagtttttc ctaattgcga ttcaaaaaag cctagcactt gtttaatatt gattgcttta
     4921 agttgtgctt ctgttagtat atccttttca cgcattgttt gtaaaagctg ttccaaatct
     4981 tcctttgtcg gttgatgttc taaagaaact gcttgcatta gcgtatgcat tgccgtgcca
     5041 atttctgttg cagataattt attttgctgt aaaaatttgg gtctgtctaa tgaaactttt
     5101 tgaaattctt ttaaaagtgt agtatcactc caactatctt gcaaagaaaa ttgccgcttg
     5161 agctctgtta ccgactgttt agcacgaatc tttgtcgcct cttcattttg gtactcatag
     5221 ttcatatatc gctgaatttc atccttataa gggcttttga caggtattgg ttgatgttct
     5281 tttatattgt ccaaccaatt aaccgtttct gtcttttcca attcattagt tagaaacatt
     5341 tccttggttt ttatttcaat ctgtagtttc atatctgtcg gaagcgtttg gatcatttcc
     5401 tcacacaata attctttaaa attaggatgt ctaattgtgg cgtttcctat ccaatccaaa
     5461 taacatttcg ctttagctct tgtggatgca ggtaaaatag tctctttttc ttttgcaact
     5521 tgtaaccaat tcttacttgt tttttcaaaa tcaggcaccg ttgctgtcaa aattaacttc
     5581 tcttctgcac gagtaagagc aacgtaaaga actcgcatct cttccgcgat catttctcga
     5641 gatttttttt gtttcattgc ttgctgcata attgttggat aaacaatcat tttctctata
     5701 tctcgataat tagatgcaaa accgtaatcc ttatctaaaa gtgttttgct ataaatatca
     5761 cgcatattaa atttcctgct taacccagag acaatgacca ctggaaattc taatccttta
     5821 cttgcatgga ttgtcatcat acgaacgaca tcttcttttt caccaagtgt ttttgcggtt
     5881 cctaaatcat cgcctcgaac ttctaagcgt tcgacaaaac ggacaaagcg aaacaaccca
     5941 cgaaaagatg ttttttcgta ttgattagct cggtcatata acgcacgtaa attagcctgg
     6001 cgttgtttgc cacccggtaa tccaccaaca aattcataaa aattagtttc ttgatagatt
     6061 tgccaaatta atgatgttaa gttttcccgg atagataact cacgccaatt atttaactgt
     6121 tgaataaaat cactcatttt atctgcagtt tccgaaacgg ttgtatcttt gtatgttaac
     6181 aatgcatcat agaaataacc attctttttc gccatacgaa cttgtcctag ctcttcttcg
     6241 tttaaaccga ttatgggtga ccgtaaaaca gcagcgagcg gaatatcttg gtaagggttg
     6301 tcaatcactt tcatcagtgc aatcatcgta gctacttctg ttgtttcaaa ataaccagaa
     6361 ttgttattcg cgtaaaaagg gatatcctga actttcattg cttcttccat atctggagcg
     6421 cttgtcatcg ccctagctaa aataactata tctcgatat
//
LOCUS       DABQVC010000164         6410 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.164,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000164 DABQVC010000000
VERSION     DABQVC010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6410
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.164"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..677)
                     /gene="gpmA"
                     /locus_tag="IBJ56_002289"
     CDS             complement(<1..677)
                     /gene="gpmA"
                     /locus_tag="IBJ56_002289"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HAM3418536.1"
                     /translation="MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKE
                     AGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAE
                     KYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPAGENLKVTLERVIP
                     YWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGIGDDEIMDLEIPTGVPLVYELNDD
                     LKPVNKY"
     gene            complement(768..3368)
                     /gene="clpB"
                     /locus_tag="IBJ56_002290"
     CDS             complement(768..3368)
                     /gene="clpB"
                     /locus_tag="IBJ56_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HAM3418537.1"
                     /translation="MDLQKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESDF
                     AKRVYDVAEVDIDALQKTVEDALTKIPVVSGSGVNYGQAMSQALFQLMRDAEKEQKQL
                     DDDFVSTEHLILAVMDQKSNPITMNLKKQHKSKKQIQEAILKIRGGKKVTSQNAEENY
                     EALTKYGRDLVVEVRSGKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAIV
                     EGLAQRIVRKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSDGQIL
                     LFIDEIHTIVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLDEYRQYIEKDAALERR
                     FQKVLVPEPTVEDTVSILRGLKERFEIHHGVNIHDNALVAAASLSNRYITDRFLPDKA
                     IDLVDEACATIRVEIDSMPSELDEVTRKVMQLEIEEAALKEEKDPASERRLEILQREL
                     ADYKEEANQMKSKWESEKNEISKIREVREQIDHLRHELEEAENNYDLNKAAELRHGKI
                     PAVEKELLELEAENREKTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLL
                     KLADELHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKAL
                     AFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRNPYSIVLL
                     DEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEEGEI
                     SPELESDVMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEI
                     TITISDNAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEIDLA
                     DKEFTFKVTE"
     gene            complement(3516..4193)
                     /locus_tag="IBJ56_002291"
     CDS             complement(3516..4193)
                     /locus_tag="IBJ56_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418538.1"
                     /translation="MNEINHTSERANTEKRTEKQIIMQKILNWFVFSLLLASIGAAIG
                     SKLSPELYLPLVVLEVALLITAMVVRRSKTINKVVGYPVVLAFAFVTGLTLGPTLTYY
                     FGAGQGAAVLMAFVTATVTFTTLAFIGAKMKKDLSFLSSALFAAIIILVIFSFVGVFL
                     PLGSMLSTIISAGGTIIFSLYILYDFNQIMKRDVELADVPMLALNLYLDFLNLFMFLL
                     RLFTGRD"
     gene            complement(4305..5075)
                     /locus_tag="IBJ56_002292"
     CDS             complement(4305..5075)
                     /locus_tag="IBJ56_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3418539.1"
                     /translation="MKPRGICFFDMDGTLLNSESKVLDTSLQALDKLRENNVIPVIAT
                     GRTLIEISHQMKITGIESAVMMNGQMAIFEGEKVYEDVIDADLLARLTEEAKSQNVEV
                     CYYNDKRIGATASTPVVKAHYDFLGEPMPEVRPNMYKEENINMALLLLETGDDYFPER
                     FPELQFVRNTPFSNDVLRKGGSKAVGISKLLEVMGYQDVPTYAFGDGMNDLEMFGAVD
                     YAIAMENAVPLLKEKATFVTKDNNSDGIMLGLKQFDLI"
     gene            complement(5139..5924)
                     /locus_tag="IBJ56_002293"
     CDS             complement(5139..5924)
                     /locus_tag="IBJ56_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418540.1"
                     /translation="MIRKLTVSDNEEVMALLKPEATLNLFIIGDIENFGYESDVQDLW
                     GEFDSEDKLHALLLRFDTFFLPYSKDANFDAKAFSEIIAKHDTYEVSGISRVTKELEP
                     FLPELAEKRQDTYFCECEHVNRISVNQDVIVRTAVAEDVAPIIKMRKHIKEFGSRDEN
                     EELIIRQIEKGVKRIYYIEQDQEVVAVAETSAENSFSAMITGVATSDGYRQRGFASTL
                     LKKLCCDVLAEGKKPCLFYDNPVAGEIYHRLGFEHTGDFVMYK"
     gene            complement(6045..6389)
                     /locus_tag="IBJ56_002294"
     CDS             complement(6045..6389)
                     /locus_tag="IBJ56_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418541.1"
                     /translation="MKNKAEKQRIATNLSLYMKINGYTHRTFALAVGISQNTLKALMI
                     GKMRNENKFQKYISQITESLALEEKFFEQPKEAITAAPITFQDTNKMHLGDEKFNAIS
                     LMLKIGEIHYES"
BASE COUNT         1769 a         1299 c         1056 g         2286 t
ORIGIN      
        1 taatatttat ttactggttt taaatcatcg tttaattcat atactagtgg cacgcctgtc
       61 ggaatttcta aatccattat ttcatcatcg ccaatacctt ctagaaattt cactaatgct
      121 cgtaaactgt taccatgcgc cgcgatgact actcgccgtc cttctttaat ttctggagca
      181 atcgtgtcca tccaataagg aataacgcgt tctaatgtta ctttcaagtt ttcacctgcc
      241 ggaatagcgt gtgtatcaag gagttgataa cggcgatcat ttttggcttg tctttcgtcg
      301 ttttcttcta ataacggtgg aagagtgtca tagcttctgc gccatttttg tacttggtca
      361 gcaccatatt tttcagcagt ttcttgtttg ttaagacctt gaagtgcgcc ataatgccgt
      421 tcgttcaagc gccaagattt atgaactggt acccacattt ggtcagattc ttctaacaca
      481 taattaagtg ttttaatagc tcgcgttaaa acagaagtga aggcaacatc gaattctaag
      541 cccgcttctt taattctttt tcctgcagtc attgcttcta caacgccttc ttgtgacaag
      601 tcaacatcat gccaacctgt aaataaattc aatttgttcc attcactttg accatgacga
      661 attaatacta atttcatctt cctcatcctt ccattttcgt ctattttcta aacgactaat
      721 ccaaccaaag ttttcccttt caagcgaggt gtcaaacctt ttctatgtta ttctgtgact
      781 ttaaaagtaa attctttatc tgctaaatca atttctacag atgaatgtgg catgatttta
      841 cctgatacaa tttctctagc aagtggcgtt tcaacatgac gcacaatata gcgtttaagt
      901 ggtcgtgcgc catataccgg atcatatgct tcttccgcaa taaatgcttt tgcattatcg
      961 gaaatagtaa tcgtaatttc ttggtcggct aaacggattt gaagttcttc tactaatttc
     1021 tccacaatgc ctttaatatc agctagtgtt agtggtttaa atagaataat atcatctacg
     1081 cggtttaaga attccggttt gaattcactt tgtaaaattt gcattacatc cgattctaat
     1141 tccggtgaaa tttcgccttc ttcggttctt tcaagtaata aattagagcc aatatttgac
     1201 gtcataataa ttactgtatt tttaaaatcg attaatcggc cttgcgaatc cgtgatacgt
     1261 ccatcatcaa gtacttgtaa tagtatgtta aatacatctg gatgagcttt ttctatttca
     1321 tcaagtagga cgattgaata aggatttcgt cttacagctt cagtaagttg accgccttct
     1381 tcatagccaa catagcctgg aggagctccg acaagtcttg atacggaatg tttctccatg
     1441 tattcagaca tatcaattcg aatcatatga tcttctgaat caaacatatt aaatgcgagt
     1501 gctttggcaa gttctgtttt accaacacct gttggcccta ggaaaatgaa tgagccaatt
     1561 gggcgtttcg gatctttaat accagcgcgt gcacgaagta cagcatcact aactaattga
     1621 acagcgtcat cttgaccaat tactttttga tgaagttcat ctgctaattt aagcagtttt
     1681 tcgcgttctc cttctactaa cttggtcact ggaattcctg tccaacgtcc gacgatttct
     1741 gcaatttcat tttctgttac ttcttcttgt aaaatccggt cttcttgtgc agttttttcg
     1801 cgattttctg cttctaactc tagtaattct ttttccacag ccgggatttt accgtgtcgt
     1861 aattctgctg ctttatttaa atcataatta ttttctgctt cttctaattc atgacgcaaa
     1921 tgatcgattt gttctcggac ctcacgaatt ttactaattt cgtttttctc agattcccat
     1981 ttcgatttca tttgattggc ttcttctttg tagtcagcta gttcgcgttg caatatttct
     2041 aaacggcgtt cactcgctgg atctttttct tcttttaaag ccgcttcctc aatttctaat
     2101 tgcattactt ttctcgttac ttcgtcgagt tcacttggca tcgagtcaat ttcgacacga
     2161 atagttgcgc atgcttcatc tactaagtcg attgctttat ctggtaagaa gcggtccgta
     2221 atataacgat tagaaagact cgctgctgca actaaagcat tatcatgaat atttacccca
     2281 tgatgaattt caaagcgttc ttttaaccca cgtaaaatgg atactgtatc ttccactgtt
     2341 ggttctggga caagtacttt ttggaaacgt ctttcgagtg cggcatcttt ttcaatatat
     2401 tggcggtatt catctaacgt agttgcgccg atacagtgta gttcaccgcg ggcaagcatc
     2461 ggttttaaca tatttccggc gtccattgcg ccatctgttt tacctgcgcc gacaatcgta
     2521 tgaatttcat caataaatag taaaatttga ccgtcacttt gtttcacttc ttgaagtact
     2581 gctttcaaac gttcttcaaa ttcaccgcga tatttagctc cagcaataag ggaaccgata
     2641 tcaagcgaga taatcgtttt atctttcagc ccttctggaa cgtcttttcg aacgattcgt
     2701 tgtgctaaac cttcgacaat ggctgtttta ccaacgcctg gttcacctat cagaactgga
     2761 ttattttttg tttttctaga taaaattcgg ataacgttac gaatttctgc atcgcgtccg
     2821 attactggat cgagtttacc acttctaact tccacgacta aatcacgtcc atattttgtt
     2881 aaggcttcat agttttcttc tgcattttga gaagtcactt ttttccctcc tctgattttt
     2941 aaaatagctt cttgaatttg ttttttagat ttatgttgtt tttttagatt cattgttatt
     3001 ggatttgatt tttgatccat gacagctaag attagatgtt ctgttgatac aaaatcatcg
     3061 tctaattgtt tttgttcttt ttcggcatcc cgcatcaact gaaaaagtgc ttggctcatt
     3121 gcttgaccat agtttacacc gcttccagag accacaggaa tttttgttaa agcatcttct
     3181 actgtttttt gaagtgcatc tatatctact tctgctacat catatacacg tttggcaaaa
     3241 tcactctctg ttaataacac tttaaaaaca tgagcgacgt cgatttcttg atgttcggat
     3301 gcaattgcta aattttgagc gtccgcaatt gtttgctgga cttgttgcgt aaatttttgt
     3361 aaatccattc attcgtcctc cttataaaag ataagtctga ccttttttga ccttaacttt
     3421 attatagttt tttatcttgc ttttgtctaa caaaaaccat cttttttata gaaaaagatc
     3481 taccaatttt taggttggca gatcttctga atttcttaat cacgacctgt aaataggcgg
     3541 agtaagaaca tgaataagtt aaggaaatca aggtataaat tcagcgcaag cattggtaca
     3601 tctgctaatt ccacatcgcg cttcatgatt tggttgaagt catacaaaat atatagtgag
     3661 aaaataatcg ttccgcctgc tgaaataatt gttgatagca tagaacctaa tggtaaaaag
     3721 actcctacaa agctaaatat aacgagaata ataatcgcag cgaataaagc actgcttaag
     3781 aaagataagt cttttttcat ttttgcgcca ataaaagcta gcgttgtgaa agtaacggtt
     3841 gctgtaacaa atgccattag aacggcggca ccttgccctg caccaaaata atatgtcaaa
     3901 gttggtccaa gcgttaagcc tgtgacaaac gcaaatgcta gtactactgg gtatcctacc
     3961 actttattaa tagttttact tcgacgcact accatcgctg tgataagtaa cgcgacttct
     4021 aagacgacaa gaggcaaata aagttctgga cttaatttac tcccaatcgc agcaccgata
     4081 gatgcaagta gcaaagaaaa tacaaaccaa ttaagtattt tttgcataat aatttgtttc
     4141 tcagttctct tttctgtgtt tgctcgctcg gatgtgtgat tgatttcgtt cattaacatt
     4201 tctcctcttc caattgatta gttttattat atcaaaagaa ttattacaat tctatcggtc
     4261 ttgcgttgga atttcacaaa aaaagaagcg cacgaggcac ttctttaaat taaatcaaat
     4321 tgtttcaagc caagcataat gccgtcacta ttgttatctt tcgttacaaa agtagctttt
     4381 tcttttaata atggtacggc attttccatt gcaatggcat aatccactgc gccaaacatt
     4441 tctaaatcgt tcattccatc accaaacgca taagttggaa cgtcttgata gcccattact
     4501 tcaagtagct tcgagatacc aactgcttta gatccgcctt ttcttaagac gtcattacta
     4561 aatggtgtgt tgcgaacaaa ttgtaattct ggaaagcgtt ctggaaaata atcatcacca
     4621 gtttcgagta aaagaagagc catattgatg ttttcttctt tatacatatt aggccttact
     4681 tctggcattg gctcgcctaa aaaatcatag tgtgctttta caactggtgt acttgcggtt
     4741 gcgccaattc ttttatcatt ataatagcaa acctctacat tttgtgattt agcttcttcc
     4801 gtcaaacgag caagtaaatc agcatcaatc acatcttcgt acactttttc tccttcaaag
     4861 atagccattt gtccgttcat cattactgcg gattcaatgc cggtaatttt catttgatga
     4921 ctgatttcta tgagcgtccg accagtagca ataacaggaa taacattatt ttctcgaagt
     4981 ttatcaagtg cttgaagcga ggtatcaagt actttggatt cactatttaa cagtgttcca
     5041 tccatatcaa aaaaacaaat tccacgtggt ttcacattat tcatccttta ctaacataat
     5101 atatccatca taccaatctt acggatacaa agtaaaggct atttgtacat aacaaaatct
     5161 ccggtgtgct caaaacctag gcggtgataa atttctcctg ctactgggtt atcataaaac
     5221 aaacatggtt ttttgccttc tgctaataca tcacaacata atttttttag aagtgtactt
     5281 gcaaaaccac gttgtctata accatcgctc gtcgctacac ctgtaatcat tgctgaaaag
     5341 gaattttctg cagatgtttc tgctacagca acaacttctt ggtcttgttc aatataataa
     5401 attcgtttca cgcctttttc aatttggcga ataattaatt cttcattttc atcgcgtgaa
     5461 ccaaattctt taatgtgttt gcgcatttta ataattggag ctacgtcttc tgccactgcc
     5521 gttctgacaa taacgtcttg atttacagaa atacgattta catgttcgca ttcgcaaaaa
     5581 taagtgtctt gtcttttttc ggcaagttct ggtaaaaatg gttccaattc ctttgtgaca
     5641 cgagaaatac cgctaacttc gtatgtatca tgcttagcaa taatttctga gaaagctttt
     5701 gcatcaaaat tagcatcttt tgaatacggt aagaaaaacg tatcgaatcg aagtaacaat
     5761 gcatgtaatt tgtcttctga atcgaattca ccccaaagat cttgcacatc actctcgtaa
     5821 ccaaaatttt cgatatcccc aataataaat aagttgaggg ttgcttcggg ttttaaaagt
     5881 gccattactt cttcattatc agatacagtt agttttctaa tcatgtgcca cactcctatt
     5941 ttgaaaattg tcttcatttt acgtgagtta ggtaggttcg tcaagccctg aatcttacta
     6001 ttttgcgcca tataaaaaag ctcgggacaa ttagtcccaa gcttttatga ttcgtaatga
     6061 atttcgccaa ttttcaacat taagctgata gcgttgaatt tttcatctcc aagatgcatt
     6121 ttgtttgtat cttgaaaagt gataggtgct gctgtaatcg cttctttcgg ttgttcaaag
     6181 aacttttctt caagtgccaa actttctgta atttgcgata tgtatttttg gaatttattt
     6241 tcgtttctca ttttcccaat catcaatgct tttaaagtgt tttgagaaat cccgactgca
     6301 agcgcgaatg ttctatgagt gtatccattt attttcatat aaagtgacaa attagtggca
     6361 attctttgtt tttctgcctt gtttttcatt tgggtgaacc tcctgtcttt
//
LOCUS       DABQVC010000165         6364 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.165,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000165 DABQVC010000000
VERSION     DABQVC010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6364
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.165"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..659)
                     /locus_tag="IBJ56_002295"
     CDS             complement(<1..659)
                     /locus_tag="IBJ56_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418542.1"
                     /translation="MVQYYTDKEFTDLTHTLAKAVKDFNLVVFVGAGTSLSQGYPNWN
                     GYIEKLIHFWQFNIQHVAGGKVTVTNELLSQFDEILNSNTTPKRKIDLLHTLLQDILE
                     EDFKEVKLNFEEYFFKDVVPDYIENSVLVEMIKLDPIFITSNYDFEIERHLKVSKQKG
                     AFKPINNIREFVESNNKLRSGDVLHLHGTTQGNWDFFVNSSVDYSRQYLKESSDFNSL
                     S"
     gene            complement(952..2346)
                     /gene="sufB"
                     /locus_tag="IBJ56_002296"
     CDS             complement(952..2346)
                     /gene="sufB"
                     /locus_tag="IBJ56_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HAM3418543.1"
                     /translation="MTEIPEIGEYQYGFHDKDTSVFRTERGLTEKVVREISNIKEEPE
                     WMLEFRLKSLEQFYKMPMPTWGGDLSELKFEDITYYVKPSEQTVRSWDEVPEEIKRTF
                     DKLGIPEAEQKYLAGASAQYESEVVYHNMKQDLEDLGIVFKDTDSALKENEDIFKEYF
                     AKVIPPSDNKFAALNSAVWSGGSFIYVPPGIKVDTPLQAYFRINSENMGQFERTLIIV
                     DENASVNYVEGCTAPVYTTNSLHSAVVEIIVKPGAYCRYTTIQNWANNVYNLVTKRTF
                     CEENATMEWIDGNIGSKLTMKYPAVHLRGEGARGTTLSIAIAGKGQRQDAGAKMMHYA
                     PNTSSTIVSKSISKQGGNVTYRGIVHFGRNADGARSNIECDTLIMDNLSTSDTIPYNE
                     ILNSNISLEHEAKVSKVSEEQLFYLMSRGLSEEEATEMIVMGFIEPFTKELPMEYAVE
                     MNRLIKFEMEGSIG"
     gene            complement(2369..2812)
                     /locus_tag="IBJ56_002297"
     CDS             complement(2369..2812)
                     /locus_tag="IBJ56_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HAM3418544.1"
                     /translation="MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQ
                     IHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEMVQGH
                     DHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK"
     gene            complement(2809..4035)
                     /locus_tag="IBJ56_002298"
     CDS             complement(2809..4035)
                     /locus_tag="IBJ56_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HAM3418545.1"
                     /translation="MIDIQKIRADFPILAQEINEKPLAYLDNAATSQKPKQVIEALTH
                     YYEFDNANVHRGVHTLAARATDAYESARGKVAKFIHAREVAEIIFTRGTTSAINLVVD
                     SYAEANIEAGDEIVISYLEHHSNLIPWQQLAKRKGAVLKYIELEEDGTISVEQAKKTI
                     GEKTKIVALAHVSNVLGTITPMKEIAAIAHQFGAVILVDGAQAVPHMEVDVVDLDADF
                     YAFSGHKMMAPTGIGALYGKRELLDAMEPTEFGGEMIDFVELYDSTWKELPWKFEAGT
                     PIIGGAIALGAAIDYLAEVGLANIHAHEQALASYAIEEMSKIEGITIYGPKDASKRCG
                     LVTFNLEGAHPHDIATILDEDGIAIRAGHHCAQPLMKWLDVSSTARASFYIYNTKEEI
                     DALIDGLKLTKEYFGL"
     gene            complement(4036..5337)
                     /gene="sufD"
                     /locus_tag="IBJ56_002299"
     CDS             complement(4036..5337)
                     /gene="sufD"
                     /locus_tag="IBJ56_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HAM3418546.1"
                     /translation="MAENMTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFV
                     DKTKITRWNFTKFETFIPFKEGVTNETLPEKVANLVDLDNKEANFYVQMDERPARLQL
                     QQELVDQGVIFTDIISAVKNHPELVKKYFMKDAVQVNEHKLTAFHAALVNGGIFLYVP
                     KNVEVKAPIQAVFVQDKAESPLVNHVLLVADDNSAVTYVENYVTVDNAPKGIVSIVEE
                     VIAEKNARITFGGVDNLASDVTTYVNRRGHIGTDSQIEWALGLMNDGDTINENVTNLM
                     GDGSSADVKTVTVGRGKQTQNVTTRVTHYGKASNGTILSHGVMKERATTIFNGIGHIK
                     HGASKSDAQQESRVLMLSPEARGDANPILLIDENDVVAGHAASVGRVDPLQLFYLMSR
                     GISQKEAERLVIHGFLDPVVRQLPIESVKTMLREVIEGKVR"
     gene            complement(5356..6141)
                     /gene="sufC"
                     /locus_tag="IBJ56_002300"
     CDS             complement(5356..6141)
                     /gene="sufC"
                     /locus_tag="IBJ56_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HAM3418547.1"
                     /translation="MATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKST
                     LSSAIMGHPKYEVTQGTITLDGEDVLEMEVDERARAGLFLAMQYPSEISGVTNAEFIR
                     AAINSRREEGDEIPVMQFIRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLL
                     MIEPKLAILDEIDSGLDIDALKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHV
                     MMQGKVVKEGGPELAKRLEAEGYDWIKQELGIELEEEEAVDQQ"
BASE COUNT         1754 a         1410 c         1075 g         2125 t
ORIGIN      
        1 ttacttaaac tattgaagtc gcttgactct tttaaatact gtcgagaata atcaactgat
       61 gaattgacaa aaaaatccca atttccctga gtggttccat gtaaatgtaa aacatcgcct
      121 gaacgtaact tattatttga ttctacaaac tcacgaatat tatttattgg tttgaatgct
      181 cctttttgtt ttgaaacctt caaatgtctt tcaatttcaa aatcataatt cgaagtgata
      241 aagattggat ctaattttat catttcaact aacacactat tttctatgta atctggtaca
      301 acatctttga aaaaatactc ttcaaaatta agctttacct ctttaaagtc ttcttccaaa
      361 atatcctgta acaaagtgtg caataaatca atttttcttt ttggtgtagt atttgaattc
      421 aagatttcat caaattgcga aagcaactca tttgtcactg taactttccc gccagcaaca
      481 tgttgaatat tgaactgcca gaaatgaatt agcttctcaa tataaccatt ccaatttgga
      541 tatccttgtg ataaagaagt tcctgctcct acgaaaacaa ctagattaaa atcctttact
      601 gcctttgcaa gtgtatgtgt caagtctgta aattctttat ctgtataata ttgaaccata
      661 attatctccc atcttataag actctatcta tatactattt ttatttattt caaataactc
      721 atctcataaa tcttaataaa gccgatttgc cttgacaaca agcctcctta ggttcactct
      781 gacacttcaa aatctctgta ataaagatat cacggttgcc ctaaaaaagt aaaataaact
      841 ataaaaaaac tatgaattaa gtcaattttt gacatggtat ccaatttgtt ttcagcaaac
      901 aaaaaagtct ctaagtactt ttttatcagt acttagagac ttttttaaca tttaaccaat
      961 cgagccttcc atttcaaact taatcaaacg gttcatctca acggcatatt ccattggtaa
     1021 ttctttcgta aatggttcaa tgaagcccat aacaatcatt tctgttgctt cttcttcgct
     1081 taaaccacgg ctcattagat agaaaagttg ttcctcagat actttggaaa ctttggcttc
     1141 gtgttctaat gagatgttgc tgtttaggat ttcgttgtac gggattgtgt ccgatgtgga
     1201 caggttatcc ataatcagcg tatcacattc gatattcgaa cgtgcgccgt ctgcattacg
     1261 accaaaatga acaattccgc gatacgttac gtttccgcct tgtttcgaga tcgacttcga
     1321 cacaatcgta gaggacgtat tcggcgcata gtgcatcatt tttgctccag cgtcttgacg
     1381 ttggccttta ccagcaatcg cgatagaaag ggtcgttcca cgtgctcctt cgcctcgtaa
     1441 atgtacagct gggtatttca ttgttaattt cgaaccaatg ttgccatcaa tccattccat
     1501 tgtcgcattt tcttcacaga aagtacgttt cgttactaga ttgtaaacgt tatttgccca
     1561 gttttggatg gttgtgtaac gacagtaagc gcctggtttt acaatgattt ccacgacagc
     1621 agagtgaagg gaattcgtag tataaacggg agcagtacag ccttccacgt agtttacgct
     1681 ggcattttcg tccacaataa ttagtgtccg ctcaaattga cccatgtttt ccgagttaat
     1741 gcggaaatag gcttgaagtg gcgtatctac tttgatacct ggtggtacgt agatgaatga
     1801 accacctgac caaacagccg agtttagcgc agcgaatttg ttgtcgcttg gtggaattac
     1861 ttttgcgaaa tattctttga aaatatcttc gttttctttt aacgcggaat ctgtatcttt
     1921 gaagacaatc cctaaatctt ctaggtcttg cttcatattg tgataaacta cttcggattc
     1981 atactgcgca gatgccccag ccaaatattt ttgttcggct tcaggaatac ctaatttatc
     2041 aaaagtacgt ttaatttctt caggaacttc atcccaagag cgcactgttt gttcagacgg
     2101 tttcacgtag taagtgatgt cttcaaactt cagttctgac aagtcgccac cccaagtcgg
     2161 cattggcatt ttataaaatt gctccaaaga cttcaaacgg aattcaagca tccattctgg
     2221 ttcttcttta atattcgaaa tttctcttac tactttttct gttaatccgc gttctgtacg
     2281 gaacacagag gtatctttgt catggaatcc atattggtat tcgccaattt ctggaatttc
     2341 agtcatgtcg tatcctcctt ttcgctactt attttgttcc ttctttttca aaaatcgctc
     2401 tctccattgc tttccaagaa agggttgcac atttgattct tgctgggaat ttcgcaactc
     2461 cggcaagtgc ctcaacgtcg ccgtattcat caatcgtttc atggtcatga ccttgcacca
     2521 tttctgaaaa ttcacgtgac atttttagtg cctctttctc ggttttccca ataatgcttt
     2581 gcgtcatcat tgaagcagag gccatcgaaa tcgaacaacc gctaccagtg aattttgccg
     2641 caacgatttt atcaccatcc atttttaaat gaagatgaat ttgatcaccg catgttgggt
     2701 tgttgaggtc gattgttaca tcgctatctg ggagctctcc attattgcgc ggatttttat
     2761 agtgatccat aatgacttgt ctataaagct gatctaattt ccggcttgtc ataatccaaa
     2821 atactccttt gttaacttga ggccatctat aagcgcatca atttcttctt ttgtattata
     2881 aatataaaag cttgcgcgag ctgtggaaga aacgtcaagc cacttcatca acggttgcgc
     2941 acagtgatga ccagctcgaa tcgcaattcc gtcttcgtcc aaaatagtcg caatatcgtg
     3001 tggatgtgcg ccttctaaat tgaaagtcac taagccacat cgtttactcg cgtcttttgg
     3061 tccataaatg gtaatgcctt cgattttgct catttcttct atcgcgtagc tggctaatgc
     3121 ttgttcatgt gcgtgaatat ttgcgagtcc gacttctgcc aagtaatcaa tcgccgcacc
     3181 tagcgcaatc gctccgccaa taatcggtgt tccggcttca aatttccacg gcagttcttt
     3241 ccaagtcgaa tcgtataatt caacaaaatc aatcatttct ccgccaaatt cggtaggttc
     3301 catcgcatca agcaattcac gtttgccata caaggcgcca atgccagtag gagccatcat
     3361 tttgtgccct gaaaaagcat aaaagtcagc atctaaatca actacatcaa cttccatgtg
     3421 aggcacagct tgcgcaccgt caacgagaat gactgctcca aattgatgag caattgctgc
     3481 gatttctttc attggcgtga tagtcccgag tacattagaa acatgagcta atgcaacgat
     3541 tttcgttttt tcaccaatcg tttttttcgc ttgttccaca gaaatcgtgc catcttcttc
     3601 tagttcgata tatttcaaaa ccgcgccctt gcgtttagct agttgttgcc acggaatcaa
     3661 attggaatga tgctctagat aagaaataac aatctcatcg ccagcttcaa tatttgcttc
     3721 cgcgtaacta tctacaacta aattaatcgc tgaagtagta cctcttgtga aaataatttc
     3781 tgctacttca cgcgcatgaa taaacttggc tactttacct cgagctgatt cataagcatc
     3841 cgtcgctctt gctgcaagtg tatgcacacc gcggtgaacg ttcgcattat caaactcata
     3901 gtaatgtgtt aaagcttcaa taacttgttt cggcttttgt gaagtggcag cattatctaa
     3961 ataagctagc ggtttttcat ttatttcttg agctaaaatt ggaaaatccg cccgaatttt
     4021 ttggatatca atcatttagc gcactttccc ttcgattact tcacgaagca tcgttttcac
     4081 actttcgatt ggtaactgac gaacaacagg gtctaagaag ccatgaataa ctaatctttc
     4141 tgcttctttt tgagaaatcc cgcgactcat caaatagaat aattgtagtg gatcaacgcg
     4201 tccaacagaa gccgcatgcc ctgctactac gtcattttca tcaattaata aaattgggtt
     4261 cgcatcaccg cgtgcttcag gactaagcat cagtacacgt gattcttgtt gtgcatctga
     4321 cttagaagcg ccatgtttaa tgtgaccaat tccgttaaaa atagttgtcg ctctttcttt
     4381 cataacacca tgggataaaa tcgtaccatt agaagcttta ccgtaatgcg tcacgcgcgt
     4441 tgtcacgttt tgcgtttgct taccgcgtcc aacagtcacc gttttcacat cagcagaaga
     4501 gccgtctccc attaggtttg ttacgttctc gttgatagta tcgccatcat tcatcaggcc
     4561 aagcgcccat tcaatttggc tatctgttcc aatgtgtcca cgacggttca catatgtcgt
     4621 aacatcactt gcaagattgt ctacaccgcc aaaagtaatg cgcgcatttt tctcagcgat
     4681 tacttcttcc acaatgctaa caatcccttt aggtgcgtta tctaccgtta cgtagttttc
     4741 cacataagtg actgcgctat tatcatccgc cacaagcaac acgtgattaa caagtggaga
     4801 ttccgcttta tcttgtacga aaacagcttg aattggtgct ttcacttcga catttttagg
     4861 aacataaagg aaaatcccac cgttcacaag cgccgcatga aaagcagtca gtttgtgttc
     4921 attcacttga actgcatctt tcatgaaata tttcttcaca agttcaggat ggtttttcac
     4981 agccgaaata atatctgtga aaataacgcc ttggtcaact agttcttgtt gcaactgaag
     5041 tctcgcaggt ctttcatcca tttgaacgta aaaattggct tctttattat ctaaatcaac
     5101 taaattcgct actttttccg gtagagtttc attcgttacg ccttctttaa aaggtataaa
     5161 cgtctcaaac tttgtgaaat tccagcgagt aatttttgtt ttatccacaa aaggcaagtc
     5221 cagttccccg taggctttaa aagcattgcg acggatatct aaaaaccaat ccggttcatt
     5281 cgcattactt gaaaaagcgt ggataaaatc atctttaatc gtcatatttt ctgccatgat
     5341 tttaacctca cttccttatt gttggtctac tgcttcttct tcctcaagtt cgataccaag
     5401 ctcttgttta atccagtcat aaccttctgc ttctaaacgt ttcgcaagtt caggtccgcc
     5461 ttcttttact actttacctt gcatcattac gtgaacaaaa tctggtgtga tgtagttcag
     5521 taaacgttgg taatgggtaa tgattaagca accgaatcct tcgccgcgca tttcatttac
     5581 acctttagag acaactttaa gcgcatcgat atcaagacca gagtcaattt catctaaaat
     5641 cgctaatttt ggctcgatca ttaataattg caagatttca ttacgttttt tctctccgcc
     5701 tgaaaatcct tcatttaaat aacgttccgc catttcttcg tccatatcta aaatatccat
     5761 tttggcatct agtttgcgga tgaattgcat tactggaatt tcgtcgcctt cttcgcggcg
     5821 gctattgatt gctgcacgaa tgaattcagc gtttgtaaca ccactaatct cacttggata
     5881 ttgcatcgct aagaaaagac cagcacgagc gcgttcgtct acttccattt cgagtacatc
     5941 ttccccgtca agcgtgattg ttccttgtgt tacttcatat tttggatgcc ccataatagc
     6001 tgaggacaac gtagatttac ctgttccgtt cggtcccatg atagcgtgga tttcgccagt
     6061 tgaaatttcc aggttaacac ccttcaaaat ttcttttcct tctatttcaa catgtaaatc
     6121 ttgaatcttt aaagttgcca taaaaaagtc ctccctagtg taaaatttgc ataatcctag
     6181 tttagtataa ttctaatctg attacaacta taaaaaccag tattcttcgc attctcccct
     6241 tcattctact attaataaag gttttttacc agttttctag cattatcact gtttctattt
     6301 tatttgagaa tccgtcccta aaaaaataca acgtgtcata ccaataaatg aaagggattt
     6361 ttca
//
LOCUS       DABQVC010000166         6291 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.166,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000166 DABQVC010000000
VERSION     DABQVC010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6291
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.166"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1146
                     /locus_tag="IBJ56_002301"
     CDS             <1..1146
                     /locus_tag="IBJ56_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HSP90 family protein"
                     /protein_id="HAM3418548.1"
                     /translation="KETLSKLSKDQIIQYGEYILGTRFQDYFLIENESGRTFGIAYMI
                     PHAVQMNAIRKNTVFLNNMYVTSEANNILPDWSFFAKCVIWTDELQPVASREAFYKNE
                     RLTSVADELGVALKKGIETLPEEALMKLLATHYLGFKALASEDAPFLKLIYPYLPVRT
                     LNGEEKLGDIIAKNDVIYYTYSVDDFRQIKDIARSSGMTLINGGYSYDSPILAQLSYF
                     VEGTEFVLIEPEEMTNKLRPMTVSEEQAYQPILTEMNSMMAEFDTDVLIKHFEPKDLP
                     IIFIHSTATQELRELERAVEETNSVFSDILESIQKEQEPAPLAHLYLNLDNELIKRLF
                     TSGKTVKELSVIVNVLYIQALLLGHYPLKRKEMVLMNQNMLRILEML"
     gene            1158..2126
                     /locus_tag="IBJ56_002302"
     CDS             1158..2126
                     /locus_tag="IBJ56_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418549.1"
                     /translation="MDYLNDLESVWGMDDTPEKIKVLERIIAGADLYNNIDDGIEARD
                     LLIDTCLTAGFPKKQLQAFSWLIKKWEDKDSDAYIDTEDLFWKYKWISEHVPTFDEVS
                     KAQIDGLLNDMKVKFEQENYSLRPYYKVCTLAAMRMGDVEKAKELFKKWSDTKADFLN
                     DCPACERNDQVHYYCFIKDYETAKKTAKPIIEGKQRCAEVPHLTYGNMALAYLALGDE
                     KMAQECFDKGYPLVEKQISLLPPLGQLLKYLVLTKQTEKAREVIDTNLETVLKAEGGL
                     DRLIFLQAAYPLFDREKEADLVEMTEALTAKFDARNGNSYYQDLLK"
     gene            2222..2968
                     /locus_tag="IBJ56_002303"
     CDS             2222..2968
                     /locus_tag="IBJ56_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HAM3418550.1"
                     /translation="MTIWVKNEKNGATEQVIREKEIALGVTLPFEYKQLLSEQNGGLI
                     RKNHFKTTEPTSYGLDFGEIYYLASLDEILTDIPEQKDVDLAGKQVYFHRDESRYIGF
                     SYIDNTSEPSIIYVDFETLQTLIVAETFATFIEELYFSPFPTDFAEQFPIKKLNQILA
                     SSNVQKTKQLLELLEDYPDKKWYLATFLGLLEKQEIPYNLVVYRLFENQLLYFRRKLA
                     PELVEQIFVRLEACDGINKAALAELYKEWK"
     gene            2981..3439
                     /locus_tag="IBJ56_002304"
     CDS             2981..3439
                     /locus_tag="IBJ56_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HAM3418551.1"
                     /translation="MLKVVFVCLGNICRSPMAEGLFRKEVAEAGLTNEIKIDSAATGT
                     WNLGKPPHRGTQAVLKKHGVDYQEMRARKISDVDFNEADFIIGMDQQNLADLNALNNN
                     PDVIVRSLMSFVPGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK"
     gene            3527..3688
                     /locus_tag="IBJ56_002305"
     CDS             3527..3688
                     /locus_tag="IBJ56_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HAM3418552.1"
                     /translation="MLGIIWGIIVVLLAVWLLGIIFHIAGGLINILLVIVLILVIWNL
                     IQMARNKRK"
     gene            complement(3738..4478)
                     /gene="nfsA"
                     /locus_tag="IBJ56_002306"
     CDS             complement(3738..4478)
                     /gene="nfsA"
                     /locus_tag="IBJ56_002306"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HAM3418553.1"
                     /translation="MNQAIDAILGHYSVRKFEDKDLTEEALTLLIKSAQAASTSSFVQ
                     AYSIIGITDKGVREQISAIAGNQPYTVQTGQLFIFVADLARHHAILEEHQVDTTALET
                     SEKWLVSVIDAALAAQNMAVAAESLGLGICFIGGIRNDVEQIAEILDLPPYTMPLFGL
                     TIGYPVANKEKAKPRLPQDLVYHENTYQKMNPTILTEYDEQIKNYYDERTAGKRVEGW
                     SEQIARGLGRTSRLDLKAFLEKQHLNQK"
     gene            complement(4491..5000)
                     /gene="trmL"
                     /locus_tag="IBJ56_002307"
     CDS             complement(4491..5000)
                     /gene="trmL"
                     /locus_tag="IBJ56_002307"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HAM3418554.1"
                     /translation="MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKM
                     LKRAGLDYWDNVKLSYYDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFV
                     FGKETTGLPDALLQKNEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNFGALLQEP
                     NYDRKIFQD"
     gene            complement(5021..6160)
                     /gene="queG"
                     /locus_tag="IBJ56_002308"
     CDS             complement(5021..6160)
                     /gene="queG"
                     /locus_tag="IBJ56_002308"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HAM3418555.1"
                     /translation="MIVKSTSDYAALKEELIAYAHEIGIQKIGFTTADPFLFLKERLL
                     EAEALDLFTGFEHPVIDERVYPELIFKEPQSIIAIALAYPSKLKEAPISKKGARRGVF
                     ARASWGIDYHTVLREKLALLETFLSERLPDVRMKSMVDTGELSDVAVAERAGIGWRGK
                     NTLLITPEYGSWVYLGEMITNIPFEPDTPASDLCGSCNQCVKACPTGSLLGEGKMNPK
                     ICLSYLTQTKDFLDEKYREVLHNRLYGCDTCQVVCPYNRGHDFHFHDEMEPDPELVRP
                     ELKPLLHISNRAFKEQFGDMAGSWRGKKPIQRNAIIILARYKDKTAVPDLIDCLQNDP
                     RPVIRGTAGWALRKIGGSDAEKAVEQALQTEQDEQVLQELTAITN"
BASE COUNT         1934 a         1116 c         1263 g         1978 t
ORIGIN      
        1 aaagaaacct tgtctaaact atcaaaagat caaattattc agtacggcga atatatcctt
       61 ggaacgcgtt tccaagatta tttcttaatt gaaaatgagt caggaagaac gtttgggatt
      121 gcttatatga ttcctcatgc tgttcaaatg aatgctatcc ggaagaacac ggtattttta
      181 aataatatgt atgtcacaag tgaagcaaat aatattttgc ctgattggtc gttttttgct
      241 aaatgcgtga tttggacgga tgagcttcaa cctgttgctt ctcgtgaggc gttttataaa
      301 aatgagcgat taactagtgt tgccgacgag cttggcgttg ctttgaaaaa aggaattgaa
      361 actcttccag aagaagcatt gatgaaatta ttagctacac attatcttgg ttttaaagca
      421 cttgcgagtg aagatgcacc atttttaaaa ttaatctatc cttatcttcc agttcggact
      481 ttgaatggcg aggaaaaatt aggtgatatt atcgctaaaa atgatgtcat ctattacacc
      541 tactcggtcg atgactttag acaaattaag gatattgcta gatcaagcgg tatgacgctt
      601 attaacggcg gctattccta tgattcgcca atcttagcgc aattaagtta ctttgttgag
      661 gggacagaat ttgttttaat cgaaccggaa gaaatgacta ataaattacg gcctatgaca
      721 gtgagcgaag aacaggctta ccaacctatt ttgacagaaa tgaatagtat gatggctgaa
      781 tttgatacag atgtattaat taaacatttt gaaccgaaag atttaccgat tattttcatc
      841 cactctacag caacacaaga attacgcgaa ctagaacgtg ctgtcgaaga aacaaattct
      901 gtttttagtg atattttaga gagcatccaa aaagaacaag aacctgcacc gcttgctcac
      961 ttgtatttaa atttggataa cgagctgatt aaaagacttt tcacttctgg aaaaacagtg
     1021 aaagaattgt ccgtaattgt gaatgtactt tatatccaag ccttactatt agggcattat
     1081 ccgcttaaac ggaaagaaat ggtattaatg aatcaaaata tgttacgaat cttagagatg
     1141 ctataggagg aagaaaaatg gattatttga atgatttaga atcagtttgg ggaatggatg
     1201 acacgcctga aaaaataaaa gtattagaac gaattattgc tggtgcagat ttgtataaca
     1261 atatagatga tggcattgaa gcacgtgatc tgttgattga cacatgctta acagctgggt
     1321 ttccgaaaaa gcaattacag gcttttagct ggttaatcaa aaaatgggaa gacaaagata
     1381 gtgatgctta cattgacacg gaagatcttt tttggaaata taaatggatt agtgaacatg
     1441 tcccgacttt tgatgaagta tcgaaagcgc aaattgacgg acttttgaat gatatgaagg
     1501 tgaaattcga acaagaaaat tattcgctaa gaccttatta taaagtgtgc acgcttgcag
     1561 ccatgcgtat gggcgatgtt gaaaaagcca aagagctatt taaaaaatgg agtgatacga
     1621 aagcagactt tttaaatgac tgtcctgctt gcgaaagaaa tgatcaagta cattattatt
     1681 gcttcattaa agactatgaa acagctaaga aaacagcaaa accgattatt gaaggaaaac
     1741 aacgctgtgc ggaagttcct catttaacgt atggaaatat ggcgcttgca tatttagcgc
     1801 ttggagatga aaaaatggcg caagaatgct ttgataaagg ttatcccctt gtggagaaac
     1861 aaatctcctt actaccacca cttgggcaat tacttaaata tttagtcctt accaagcaaa
     1921 cggaaaaagc gcgagaagtg attgatacca acttagaaac tgttcttaaa gctgagggtg
     1981 gtttagaccg acttattttc ttacaagcag cctaccctct tttcgaccga gaaaaagaag
     2041 ctgatttggt agaaatgacg gaagctttaa cggcgaagtt tgatgcgcgg aatggaaata
     2101 gttattatca agatcttttg aagtaaaatt ttggaacata gttaggaatt atttctagct
     2161 atgttctttt gtttgcgcta ttttgctttt tttaggataa tacagggagg agttgaagag
     2221 gatgacgatt tgggttaaaa acgaaaagaa tggcgcaact gaacaagtaa ttcgtgaaaa
     2281 agaaatagcg ttaggcgtca ctttaccatt tgaatacaaa cagcttttat cagagcaaaa
     2341 tggtggattg attcgcaaaa atcattttaa gacgacggaa ccgacttctt atggcctaga
     2401 ttttggtgaa atctattatc tggctagttt ggatgaaatt ttaacggata ttccggaaca
     2461 aaaggatgtt gatctcgcag ggaagcaagt ttatttccac cgggatgaat cgcgctatat
     2521 tggtttttct tatatagata atacgtccga acccagtatt atttatgttg attttgaaac
     2581 gttacaaaca cttattgttg ctgaaacgtt tgctacattt atagaggaat tgtactttag
     2641 tccctttcct accgatttcg cggaacaatt tcccataaaa aaattaaatc aaattctcgc
     2701 ttccagcaat gtgcaaaaaa caaaacaatt actggaacta ttagaagatt atccagataa
     2761 aaagtggtat ttagcgacat ttttaggatt acttgaaaaa caagaaatcc cgtataattt
     2821 agttgtctat cgtttgtttg aaaatcaatt gctttatttc cggagaaaac tcgcgcctga
     2881 acttgtggag caaattttcg tccgactgga agcatgtgat gggataaata aagcggctct
     2941 ggccgaatta tataaggaat ggaaataagg aggaattcaa ttgttaaaag tagtttttgt
     3001 ctgtttaggg aatatttgtc gttcaccaat ggctgagggg ttatttcgga aagaagttgc
     3061 agaagctggg ttaacgaatg aaataaaaat tgattctgct gcaactggta cttggaattt
     3121 agggaaaccg ccacaccgcg ggacgcaagc tgtgttgaaa aagcatggtg ttgattatca
     3181 agagatgcga gctcgaaaaa tttctgatgt tgattttaac gaagctgatt ttattatagg
     3241 gatggatcag caaaatttag cagatttaaa tgcacttaat aataatccag atgtcatcgt
     3301 tcgctcgctt atgtcctttg tgcctggtca agaggataaa gatattccag acccatatta
     3361 tacaggggat tttgatgaaa ccgaacgcat ggtaactgag ggagtaaagg cccttttagc
     3421 ttatatcaca aaaaaatagt ctgtttttag ccctaatatg tttaaagact gacctcacgg
     3481 gaatatataa gagtacaatc aaaagtgcag aaagaggttt ttatacatgt taggaattat
     3541 ttggggaatc atcgtagttt tattagcagt gtggttactt ggaattattt tccatattgc
     3601 gggtggatta attaatatct tgttagtaat cgttttaata ctcgttattt ggaacttaat
     3661 tcaaatggct agaaataaac ggaaataacc gaaaaagaac ggtacggcgc attatcttaa
     3721 tgcgccgtac cgttctttta tttttgattt aaatgttgtt tttctaaaaa tgcttttaag
     3781 tctagacggc ttgttcttcc aagcccacgc gcaatttgtt cggaccaacc ttctactcgt
     3841 tttcctgctg ttctttcgtc gtagtaattt tttatttgtt catcatattc agttagaata
     3901 gttgggttca ttttttggta ggtgttttcg tggtatacca aatcttgagg caatctcggt
     3961 ttcgcttttt ctttgttagc aaccggataa ccaattgtca agccgaataa tggcatcgta
     4021 tatggtggta aatcaagtat ttccgcgatt tgttcgacat cgttacgaat cccgccaata
     4081 aagcaaatgc caagtcctaa tgattctgcg gcaacggcca tattttgtgc agcaagtgcg
     4141 gcatcaatca cagaaacaag ccatttttct gacgtttcca gtgcagttgt atccacttga
     4201 tgttcttcta agatggcgtg atgacgagct aaatcagcaa cgaaaataaa tagttgaccg
     4261 gtttgtactg tatatggttg atttcctgca atggctgaga tttgttcacg aacgccttta
     4321 tctgttattc cgatgatgga gtatgcttga acaaaactgg atgtagatgc ggcttgtgca
     4381 ctcttgataa gtaaggtcaa cgcttcttcc gttaagtcct tatcttcaaa ttttcgcact
     4441 gagtaatgtc ctagaatagc atctatcgcc tgattcatcc taactccccc ttagtcttga
     4501 aaaatttttc gatcgtaatt cggttcttgt aaaagtgcgc caaaattctg ctgacgtaac
     4561 gcttcataag ctaaaattgc cgctgtgttc gataaattca acgaacgaat atgatctgtc
     4621 attggaatac gcaaacaatt ttcttcattc ttttgtaaaa gcgcatctgg caatccggtc
     4681 gtttcttttc caaaaacgaa gaaataatct ttgtttgggt cactataatc gatatcacta
     4741 taaacatgac gaccaaattt ggtaatgtag taaaattctc cgccttcatt tttctcgaag
     4801 aattcatcta gagaatcgta ataggaaagt tttacgttat cccagtaatc aagtccagca
     4861 cgttttaaca ttttatcatc tgtcgaaaaa ccaagtggac ggattaaatg taagtaagta
     4921 tccgtcccgg cacatgttct ggagatattt ccggtattcg ctgggatttc tggttgatat
     4981 agtacgatat ggtttggcat tgcttttcac ctggtttcta ttaatttgtt atggctgtta
     5041 attcttgtaa tacttgttca tcttgttcgg tttgaagtgc ttgctcgaca gctttttcgg
     5101 catcgcttcc accgattttt cttagcgccc agccagccgt tcctcgaatg actggtcttg
     5161 gatcgttttg taaacagtca attaagtctg gtacagctgt tttatcttta taccgcgcta
     5221 gaataatgat ggcatttcgc tgaatgggct tcttcccacg ccacgaaccc gccatatcgc
     5281 caaattgttc tttaaaagcg cgattggaaa tgtgtaatag tggttttaat tctggtcgaa
     5341 caagctctgg atccggctcc atctcatcat gaaagtggaa atcatgccca cgattatacg
     5401 gacaaactac ctgacaagta tcacaaccat acaaacgatt atgcaacact tcgcgatatt
     5461 tttcatctag aaagtctttt gtttgtgtca aataacttaa acatattttc ggattcatct
     5521 tcccttcacc cagtaaggaa cctgtcgggc aggctttcac acattgattg caactaccac
     5581 acaagtcgct agccggcgta tctggttcga atggtatatt agttatcatt tcgcctaaat
     5641 agacccacga gccgtattct ggcgttatga gcagcgtgtt tttcccgcgc cagccaatgc
     5701 ccgctcgttc tgctacagct acatctgata attccccagt atccaccatt gatttcattc
     5761 gtacatctgg caaacgttca cttaaaaaag tttcgagtag cgctaatttt tctcgtaaaa
     5821 cggtatgata atcaattccc caagaagctc tggcaaatac acctcgtcta gctccttttt
     5881 tacttatagg tgcttctttt aatttagacg gataagcaag tgcaatggcg ataatcgact
     5941 gcggttcctt gaaaataagc tctggataaa cccgttcatc aattaccgga tgttcaaatc
     6001 ctgtaaaaag gtccagcgct tccgcttcta gtaatcgttc ttttaaaaat aaaaaagggt
     6061 ctgctgttgt gaaaccaatt ttttgaatac ctatttcatg cgcataagca atgagttctt
     6121 ctttcaatgc ggcgtaatct gatgtcgact tcactatcat catcccctct ctccttattt
     6181 tcaggcaata aaataaacgc aatgcttcgc ttaaaaaggt cgaaacactg cgttgataac
     6241 aggatttata aaaaaatata aagcgggtga tgggaatcga acccacgaca a
//
LOCUS       DABQVC010000167         6224 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.167,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000167 DABQVC010000000
VERSION     DABQVC010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6224
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.167"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            121..798
                     /locus_tag="IBJ56_002309"
     CDS             121..798
                     /locus_tag="IBJ56_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3418556.1"
                     /translation="MVKVYIVEDDEVIRDTIRKHLSKWGFEIGVVEDFNNILQEFLAF
                     EPQLVILDVNLPFFDGFYWCNQIREVSNVPIIFLSSRNSRMDQIMGMNMGADYYIEKP
                     VDLDVLMARINALLRRTYSYADLEEANVMEHNNVFLHIDTNTLTHLEDKIELTKNEFL
                     ILYELMKQKGSIVSRDEIMRALWEDESFVDDNTLTVNVVRIRKKLAEIGLSEFIKTKK
                     GQGYMIE"
     gene            868..1743
                     /locus_tag="IBJ56_002310"
     CDS             868..1743
                     /locus_tag="IBJ56_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3418557.1"
                     /translation="MKILVFGGTRFFGKKLVERLVSEGHEVTIGTRGKTEDNFGDTVK
                     RVILNRESRDALFQLAKEDWDVIYDNICFSPKEALYAVDAFKGKVKRYIYTSSLSVYS
                     QKGRALVEADFNPEHYEIVIGDKEDFDYGEGKRLAEAVFFQKASFPVVAVRFPIVLGL
                     DDYTKRLHFHINHIKNHQEIGISNGQAEIGFITSDEAAHFLEWVGVESDLTGPVNATS
                     NGTYALNGFIKMLEEKIGKLALVEEVTDDVDDSPFGIEKTYYLDNTKATEAGFVFNDL
                     KVWLPALVTAILKEN"
     gene            1764..2222
                     /locus_tag="IBJ56_002311"
     CDS             1764..2222
                     /locus_tag="IBJ56_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418558.1"
                     /translation="MLNFEEKKALIESIDGFELHEISMGRINVHYPASKRDKKIIVKH
                     LHPNGNAFVYAPFLEVEPLDKQGYVNVKDYSENEIRVLLLEAKEFMDSDEDGYKEGLT
                     KIYQDNSGEKLSLVYENKMWVIYTGENLEAVFPTLESAEGYLLDEGFFEA"
     gene            2239..3981
                     /gene="ade"
                     /locus_tag="IBJ56_002312"
     CDS             2239..3981
                     /gene="ade"
                     /locus_tag="IBJ56_002312"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HAM3418559.1"
                     /translation="MVENLEQLQERVAVSDGRAKADLVIKNGRIINVFSGEIMDGDIA
                     IKNGYIAGIGNFPDAEKIIDAAGAFIAPGFIDAHVHVESAMVTPAEFARVLLPNGVTT
                     IVTDPHEIANVAGEKGIEFMLEDAKGVPIDMFVMLPSSVPATEGEHNGETLHAEKLHP
                     LYRHEKVIGLAEVMDFPSVAKGSSDILTKIIDAKKEGGRIDGHGAGLTSADLNNYLAV
                     GIRTDHESTTAKEATDRLRAGMFVMLREGTVGRDLLQTIPAVSEKNSHRFCFCTDDKL
                     INDLITEGSINFNIRLAIKNGIDPITAIQMATINAANCHNLPYLGAVAAGYQADIVFL
                     TDIETVEISKVLKNGEVVVDNGVRHEAAFKQQAAVPFVSPPINHHVSLQDLALPLTKE
                     TCYVIGMQPNSLFTEKRIEQVAIQDGKFVPTVENDLLKMAVVERHHDTGCVGLGIVKG
                     FGLTEGAIATTVAHDSHNIVAVGISDEAMKAAIDHITQTGGGIAVVNGAGQVLHDLAL
                     PIAGLLSDKSYEEVENDLAGLLNAFKQISTADGFDPFLTLSFLTLPVIPELKLTDQGL
                     FDFATFQIISNEVN"
     gene            4003..5043
                     /locus_tag="IBJ56_002313"
     CDS             4003..5043
                     /locus_tag="IBJ56_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HAM3418560.1"
                     /translation="MNWWSYIKDKRFFLLFFCSIMFFVGVLISIDPNSKLTLGNFIYL
                     YVFVLVFLLSYLVLGYFFKYNYWREMKELVSGEIEENIIELLPKPRTREQAFFNQLMA
                     KKHKEELRTISKLQDKQQEYHDFILYWVHEVKTPVVASKMLINNPDLNDTETIFKQID
                     EELTTIDKLVMQALYFSRLDTFSKDYFIQEQNLGVVVRESVKRHSKLFIGKKMKLDLQ
                     NVDMDVRTDSKWLGFILDQILSNALKYTKSSGEVKIWCDTEASEKKVLHIKDNGRGIK
                     EEDLPRVFEQGFTGNIGRQEKKATGMGLYLAKQMAKKLGHEICIQSESGVGTEVKIYF
                     EQKDDYLLIAKD"
     gene            5441..6082
                     /locus_tag="IBJ56_002314"
     CDS             5441..6082
                     /locus_tag="IBJ56_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HAM3418561.1"
                     /translation="MDYIMEILPALLDGAKTTLLVFAVTLVCSIPLGAVVAVGNISKI
                     APLKFILNIYIWIMRGTPLLLQLIFIYYGLPIIGVVFDRMDAVFIAFILNYAAYFAEI
                     FRGGFLSIENGQYESAKVLGLTYGQTLRKIVLPQVVKRVLPAIGNEVINLVKDSSLVY
                     ILGIGDLLRAGKIAMSRDVTLIPLVLVAAIYLALTAILTILFKQLEKRFSYYK"
     gene            6093..>6224
                     /locus_tag="IBJ56_002315"
     CDS             6093..>6224
                     /locus_tag="IBJ56_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3418562.1"
                     /translation="MLEIKNLSKKFDQKTILDNVNISLQDGEILSIVGPSGGGKTTLL
                     "
BASE COUNT         2059 a          930 c         1336 g         1899 t
ORIGIN      
        1 ttattacttt ttgtgtatca attcttttac caaaattgtg atggccaata aaaagtaatt
       61 ggcttttgtg gttatttcag ctaaaatgag aagatagttc caccgaggga ggcactagaa
      121 atggtaaagg tatatatcgt agaagatgat gaagtaattc gtgatacaat ccgaaaacat
      181 ttaagtaaat ggggatttga gattggtgta gtagaggatt ttaacaatat tttacaagag
      241 tttttagctt tcgaacctca attagttatt ttagatgtta atcttccttt ctttgatggc
      301 ttttattggt gtaatcaaat tcgagaagtt tcgaatgtac ccattatctt tttatcatca
      361 cgtaattcgc gaatggacca aataatgggc atgaatatgg gtgcagacta ttatattgaa
      421 aaaccagttg atctggatgt tttaatggcg cggataaatg ctctattaag gcggacatat
      481 tcttacgcag atttagaaga agccaatgtg atggagcata ataatgtttt cctacacatt
      541 gatacgaaca cacttacaca tttagaagat aaaattgagc taacgaaaaa tgaatttttg
      601 attttatatg aattaatgaa acaaaaaggt agcattgtaa gtcgtgatga aattatgcgc
      661 gcactttggg aagatgaaag ttttgttgat gataatacat tgacagttaa tgttgttcgt
      721 attcgtaaaa aactagcaga aattggtttg agcgaattta tcaaaacgaa aaaaggccaa
      781 ggatatatga ttgaatgacg aaaaaacagg aagatagcgc taaaaaacgc gaacttcctg
      841 tttttcgtaa atggaggagg agtctaaatg aaaattttag tattcggtgg tactcgtttt
      901 tttggcaaga aattagtgga aagacttgtt tcagaaggac atgaggtcac cattgggaca
      961 aggggcaaaa cagaagataa ttttggtgat actgtcaaac gggttatttt aaatcgagaa
     1021 tcaagagatg ctttattcca attagcaaaa gaagactggg atgttattta cgataatata
     1081 tgtttctctc cgaaagaagc actttatgcc gtagatgcat ttaaaggcaa ggtaaaacga
     1141 tacatatata catcatcact ctctgtttat agtcaaaaag gtcgagcttt agttgaagct
     1201 gactttaatc cagagcatta tgaaattgtt attggagata aagaagattt tgattacggt
     1261 gaagggaaac gacttgctga agccgtattt ttccaaaaag cttcttttcc agtagttgca
     1321 gttcgttttc caatcgtgct tggacttgac gattacacaa aacgccttca ctttcatatt
     1381 aatcatatta aaaaccacca agaaattggg attagtaatg gacaagctga gattggcttt
     1441 attacttctg atgaagcggc gcatttttta gagtgggttg gtgtggaatc ggatctgaca
     1501 ggaccggtaa acgctacctc caatggcaca tacgcattaa atggtttcat caaaatgctt
     1561 gaagaaaaaa tcgggaaatt agcactagtt gaagaggtga cggatgacgt cgatgattct
     1621 ccgtttggca ttgaaaaaac ctattattta gataatacga aagctaccga agctggtttt
     1681 gtgtttaatg atttaaaagt atggttacca gctttagtga cagctatttt aaaagaaaat
     1741 taatttgggg gaaaaataat actatgttaa actttgaaga aaaaaaagca ttaatagaat
     1801 ctatcgacgg ctttgaatta cacgaaattt ctatgggccg tattaatgta cactatccag
     1861 caagtaaaag agacaagaaa atcatcgtca aacatcttca tccaaacggt aatgcttttg
     1921 tttatgcacc atttctagag gtagagccac tcgacaaaca aggctatgtg aatgtaaaag
     1981 attactctga aaatgaaatc cgcgtattac tattagaagc aaaagaattc atggatagtg
     2041 acgaggatgg ctataaagaa ggtctaacta aaatatatca agacaatagt ggcgaaaaac
     2101 tttcactagt gtatgaaaat aaaatgtggg ttatttatac gggggagaac ttggaagcag
     2161 ttttcccaac ccttgaaagc gcagaaggtt atttgcttga tgaaggtttt tttgaagctt
     2221 aattgacgga ggcgagtttt ggtggagaat ttagaacagc tgcaagaacg agttgcagta
     2281 agtgatggac gagcaaaagc agatttagta ataaaaaatg gacgaataat aaatgtgttt
     2341 tcaggagaaa taatggacgg agatattgcc atcaaaaatg gttatattgc tggtattggc
     2401 aattttccag atgcagaaaa gataatagat gctgctggtg ccttcattgc acctggtttt
     2461 attgatgcac atgtccacgt ggagagtgcg atggtcacac ctgctgagtt tgcccgtgtc
     2521 ttactcccaa atggtgttac aacgattgtt acagacccgc atgaaattgc caatgtggct
     2581 ggagaaaaag gaattgaatt catgctagaa gatgccaaag gagtaccaat agacatgttt
     2641 gtcatgctcc catcttctgt tcctgcaacg gaaggcgaac ataatggcga aacattacat
     2701 gctgagaaac tccatccgct ttatagacat gaaaaagtaa tcggccttgc agaagtgatg
     2761 gattttccat ctgtagcaaa aggaagttcg gatattttaa ccaaaattat cgatgctaaa
     2821 aaagaaggcg gacgaattga tggacatgga gctggcttaa cgagcgctga tttgaataat
     2881 tatttggctg ttggtattcg gacagatcat gaaagtacta ctgctaagga agcaacagac
     2941 cgcttacgtg ccggaatgtt tgttatgcta cgcgagggaa ctgtaggccg tgatttactt
     3001 caaacaattc ctgcagtatc tgaaaaaaat agccatcgtt tttgcttttg cacagatgat
     3061 aaactaatta atgatttaat tacggaagga tcaattaact ttaacattag actggctatc
     3121 aaaaatggaa tagacccaat taccgctatc caaatggcaa ctattaatgc agctaattgt
     3181 cataatttgc cataccttgg tgcagttgct gcaggatacc aagcagatat tgtttttcta
     3241 acagatatag aaacagtaga aattagcaaa gttttgaaaa atggagaagt agtcgtggat
     3301 aatggtgttc gtcacgaagc tgcatttaag caacaagcgg cagtaccatt tgtatctcca
     3361 ccaattaatc atcatgtgag tttacaagat ttagcattac ctttgaccaa agaaacgtgt
     3421 tatgtaatcg ggatgcaacc caatagttta tttacagaaa aacgtatcga acaagtggct
     3481 attcaagacg gtaagtttgt tccaaccgtg gaaaacgatt tactcaaaat ggcagttgta
     3541 gagcgtcacc atgatactgg ttgtgttgga ttaggcattg taaaaggctt tggtttaaca
     3601 gaaggcgcaa ttgctacgac tgtcgcgcac gattctcata atattgttgc tgttggcatt
     3661 agtgatgaag caatgaaagc ggctattgat catattactc aaacaggtgg cggtattgct
     3721 gtagtaaatg gagctggtca ggtacttcat gatttagccc ttccaatcgc tggattgctt
     3781 agtgataaat catacgaaga agtggaaaac gatttagcgg gtcttttaaa tgcctttaaa
     3841 cagattagta cggctgatgg ttttgatcca tttttaacat tgtcattctt aacattacca
     3901 gtgattccag aattaaaatt aaccgatcaa gggttgtttg attttgctac gtttcaaatt
     3961 atttcaaatg aagtaaacta attagtagcg aggaggtgcg ccatgaattg gtggagttat
     4021 ataaaagata agcgattttt cttattgttt ttttgtagta ttatgttttt tgtaggcgtg
     4081 ttgatttcga tcgatccgaa cagtaaatta acgcttggaa atttcattta tttgtatgtt
     4141 tttgttttag tcttcttgct ttcctatctc gtgctgggct atttctttaa atataattat
     4201 tggcgtgaaa tgaaggaact tgttagcgga gagattgaag agaatatcat tgaattacta
     4261 ccaaaaccac gtactcgcga acaagccttt tttaatcaac taatggcaaa aaaacataaa
     4321 gaagaattac gaactattag taagctacaa gataaacagc aagaatatca tgattttatt
     4381 ttatattggg tacatgaagt gaaaaccccg gttgttgcaa gtaaaatgtt aattaacaat
     4441 cctgatttaa atgatacaga aacgattttc aaacaaatcg atgaagaatt aacaacaata
     4501 gataaattag ttatgcaggc actttatttt tcacgtctag atactttctc aaaagactat
     4561 tttattcagg agcaaaatct tggagtagta gtgcgcgaat cagtcaaacg gcattctaaa
     4621 cttttcattg ggaagaaaat gaagttggat ttgcaaaatg tggacatgga tgtgcgtacg
     4681 gatagcaagt ggcttggttt tattttggat caaatcttgt ccaatgcact caaatacaca
     4741 aaaagcagtg gcgaagtaaa aatttggtgt gatacagaag catctgagaa gaaagtgcta
     4801 cacataaaag acaatggacg tggaattaag gaagaagatt tgccacgtgt gttcgagcaa
     4861 ggtttcacgg gtaatattgg tagacaagag aaaaaagcta cgggtatggg tttataccta
     4921 gctaaacaaa tggcaaagaa actaggtcac gaaatttgta ttcaatctga aagcggcgta
     4981 ggaacagaag tgaaaatcta ctttgaacag aaagatgatt acttactgat tgccaaagat
     5041 taataaaaag tggtacacca attatgattg gcgtatcact ttttttgtaa ataaaatggt
     5101 tgactctatc gctttatcgt ggtagagtat tagcaagaag aagtaaaagc gtcgaacaga
     5161 acaagtagag cgtaattctt taaaagagag tccttggttg gtgtgaaagg ataaagatag
     5221 cgttatcgaa cacatctcgg agctggtttg ctgaagcata agtgagtagg tgaactcggg
     5281 ttaagcccgt tatagcttgt tagtctcgaa ctaacagagg ttggtactgc gaagtatcag
     5341 caaattgagg tggaaccacg tgaatattat tctcgtcctc ttggccaatt agcgccaagt
     5401 gcgacgggat ttttttatgt taaaaaagga gcgaagaatg atggattata tcatggagat
     5461 tttaccagca ttacttgatg gggcaaaaac aacactgctc gtttttgcag ttacgttagt
     5521 ttgttcgata ccactcgggg cggttgtggc agtcggaaat attagcaaaa tagccccact
     5581 taaatttatt ttaaatattt acatttggat tatgcgaggc acgccattac ttttacaatt
     5641 aatttttatt tattatggct taccgattat cggggttgtt tttgaccgaa tggatgccgt
     5701 ttttattgct tttattttaa attatgcagc ttattttgca gagattttcc gcgggggatt
     5761 tctttccatc gaaaatgggc aatatgagag cgccaaggtt ttaggtctta cttacggcca
     5821 gacactgcgg aaaattgtct taccacaagt tgtcaaacgt gtcttaccag caattgggaa
     5881 tgaagttatt aacttagtaa aagactcttc tttagtatat attcttggaa ttggcgactt
     5941 actaagagcc gggaaaattg ctatgagtag ggatgttaca ctgattccac tcgtattagt
     6001 agctgcaatc tacttagctt taacggctat tctaaccata ttatttaaac aactcgaaaa
     6061 acgttttagt tattataaat gaggtgaaga aaatgttaga aattaagaat ctatcgaaaa
     6121 aatttgatca aaaaacaatt ttagataatg tgaatatttc tcttcaagat ggtgaaattc
     6181 tctcaattgt tggtccatca ggtggtggga aaacaacttt actg
//
LOCUS       DABQVC010000168         6107 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.168,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000168 DABQVC010000000
VERSION     DABQVC010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6107
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.168"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(79..642)
                     /gene="raiA"
                     /locus_tag="IBJ56_002316"
     CDS             complement(79..642)
                     /gene="raiA"
                     /locus_tag="IBJ56_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HAM3418563.1"
                     /translation="MLKYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNL
                     KVYSDKNAKVEVTIPLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD
                     KGAERDYFAYSDVNGSTPPEENEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFY
                     VYTDAETNGTNIVYSRKDGKYGLIETN"
     gene            complement(837..1493)
                     /locus_tag="IBJ56_002317"
     CDS             complement(837..1493)
                     /locus_tag="IBJ56_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HAM3418564.1"
                     /translation="MTNCLLCFQPVRQSASWEISWLFEPLPICCDACLAGFEKLTGLL
                     CKNCSKESLDDVCEDCRSRTHFLDSNKSIYRYNDFAKEYMKKFKFQGDYEIGAIFKKE
                     LRNFLSEKKEKIVPIPVSEMRKVERGFNQTTAILKQSGILYEELLAKKHTEKQSKKTK
                     RERLASEQTFYFSGKEIYESTEVILFDDIYTTGSTLNLAAQILKEAGVYKVSALTIFR
                     "
     gene            complement(1486..2805)
                     /locus_tag="IBJ56_002318"
     CDS             complement(1486..2805)
                     /locus_tag="IBJ56_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HAM3418565.1"
                     /translation="MDIFPGRLYQEREIESKEGLREVVAIESNKCFRCGNTDVQLFGK
                     MSCALCKREDCIYCRNCIVMGRVNSCQKLYYQHARLLLETKEVLLRWEGALSAGQRKA
                     SNAIVVNLKAKTDMLLWAVAGSGKTEMMFEGMDWALRQGFRICVASPRVDVCLELLPR
                     LKEAFPSIDIVCLYGDSKDNYQGEQFVIATTHQLIRFYEAFQVIFIDEVDAFPYAKDP
                     FLEYAVMKARTKEGSTIIITATPEKKWQEECVRGKRNFVKIPGRYHRKKLPVPRTCWI
                     GPWKKNLAKGKITPKLIQWMNDVKKKDQPALIFFPEIDAMNKFANALENKGYASPVTV
                     HSADELRKEKVEWLRKGKIKLLLTTTILERGVTFTDVQVAVFGSEARIFTEAALVQIS
                     GRAGRKLSHPTGDVCFFHYGKTIEMKQAISHIQKMNQQGVIEGMLDD"
     gene            complement(3001..3852)
                     /locus_tag="IBJ56_002319"
     CDS             complement(3001..3852)
                     /locus_tag="IBJ56_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HAM3418566.1"
                     /translation="MNEKIAVVTDSTTYLPNEVKEQLRINVVPLSVIIDGKSYREGEE
                     LSAADFYRKVKEAENFPTSSQPAPGDFIHLFEQLKEQGFDTVISIHLSSGISGTFQNA
                     ASAGELIEGLNVVAYDSELSCMAQGMFVVKAAEMALANEPLDQIIQKLDKIKQAQDAY
                     FMVDDLNNLQRGGRLNGAQALVGSLLQIKPILHFNDKQIVLFEKVRTQKKALKRIEDI
                     LQKAVQNKTAEKAYVIHGNDLAKGEAWLAQLEAKFPEVTFELSYFGPVIGTHLGEGAL
                     GLTWSIK"
     gene            complement(3873..4559)
                     /locus_tag="IBJ56_002320"
     CDS             complement(3873..4559)
                     /locus_tag="IBJ56_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAM3418567.1"
                     /translation="MALKIMIVDDHQLFREGIKRILELEDSFEVVAEAENGKNIVAKV
                     REYKPDIVLMDINMPTVNGLDATEMLVRQFPSIKVIVLTIHDTDEYVTEALRAGAVGY
                     LLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKM
                     PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVT
                     AIKHGWVYIR"
     gene            4944..5579
                     /locus_tag="IBJ56_002321"
     CDS             4944..5579
                     /locus_tag="IBJ56_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HAM3418568.1"
                     /translation="MLDHYLTIHSDGKHEIIIEKSRFICHIKRATTETEAQTFIQEIK
                     KEHRDATHNCSAYIIGENDQYQKAHDDGEPSGTAGVPMLEVLKKKSLKNVAVVVTRYF
                     GGTKLGAGGLVRAYGNAVSEAIQAIGIVECKLATIVECSFAYPLLGKIENALELKAYQ
                     IDKKEFTEKVVLHIFVDNDELQDFFNWITEISNGQLEYKEGPQKYREKDVT"
     gene            5521..>6107
                     /locus_tag="IBJ56_002322"
     CDS             5521..>6107
                     /locus_tag="IBJ56_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418569.1"
                     /translation="MDNLNIKKDHKNIEKRMSLSMSTNVFIQLPDTILTKRTILKKTS
                     IADATTLFDIWSDDEVAQFMNIEKFSTILQAEEMIQAIENEPNACRYTIFTTDDSLHA
                     IGSLGINDINKTNQTIEIGYELAKSHWRQGFMFEILTTFLTTVKPYLPYKVLTAKVLP
                     DNVASIKLLKKLGFELTTTGQELDLHSGRICEISN"
BASE COUNT         1833 a         1284 c          932 g         2058 t
ORIGIN      
        1 aaatgccata aattcttcat ctaagagtaa aaaaatggag accaagattg gcccccatct
       61 gttaattatt attttaaatt aatttgtttc aatcaaacca tatttgccgt ctttacgaga
      121 ataaacaata ttggtaccgt ttgtttccgc atcagtgtaa acatagaaac tatgacccag
      181 caaattcatt tgtaaaacag cttcttcact atccatcggt tttaatgaaa attgttttgt
      241 tcttacaatt tcaagatcaa aatctccttc attttcttct ggtggtgtgc tgccgttaac
      301 atcagaataa gcaaaataat ctctttctgc ccctttgtca cggaacttgc ggtttacttt
      361 tgttttatgt ttgcgaattt gtctttctaa tttatctaca attaagtcga tgctagcata
      421 taaatctcca cttgtttctt ctgcacgtag cacaagattt gggagcggaa tggtcacttc
      481 aactttcgca tttttatcgg aatatacttt taaattaaca tgaacgttag cgtctggagt
      541 ctccgtaaaa tatcgttcta atttatcgat tttcttttca acataatctc ggatcggttc
      601 tgttacttca atattttctc cacgaatgtt gtacttaagc atagcaattc ctcctttgaa
      661 ataaaacaaa ataacgataa agaagagtat tcttcttacc cttagtctac gtgaaaacga
      721 tgtgttttgc aaacatttgc acaaagagct aagaagctta cattcactta tctttattta
      781 gtattttatt ccactaatac cgcttccgca aacctctttt agaagataaa tatcatctat
      841 ctgaatatcg ttagcgcact caccttgtac actccggctt cttttaagat ttgcgctgct
      901 aggttaagtg tgcttcctgt ggtgtaaata tcatcaaata atattacttc tgttgactca
      961 taaatttctt ttccagaaaa gtaaaatgtt tgttcagatg ctaatcgttc cctctttgtt
     1021 tttttagatt gcttttctgt atgctttttg gctaaaagct cttcatatag gatgccagat
     1081 tgttttaata tcgcggttgt ttgattaaat ccacgttcta ctttccgcat ctcgcttact
     1141 ggaattggta caatcttctc tttcttttct gatagaaagt tccttaattc ctttttgaaa
     1201 atagccccta tttcataatc cccttgaaat ttaaacttct tcatatattc tttggcgaaa
     1261 tcattgtaac gataaatgga tttattacta tctaaaaaat gtgttctact tcggcaatcc
     1321 tcgcagacat catctaagga ttctttacta caatttttac atagtaagcc agttagtttt
     1381 tcaaatcccg ctaagcatgc atcacaacaa attggcaaag gttcaaataa ccaacttatt
     1441 tcccaactgg cgctttgcct aactggttga aaacaaagta agcaattagt catctagcat
     1501 cccttctatc actccttgtt gattcatttt ttgaatgtgg gagatagctt gcttcatttc
     1561 tattgtttta ccgtaatgaa aaaagcaaac gtctccagtc ggatgagata atttcctacc
     1621 tgcccttcct gaaatttgaa ctaaagcagc ttccgtaaaa atacgagctt cacttccaaa
     1681 caccgctact tgcacatctg taaaagtaac acctctctct aaaattgtag ttgttaataa
     1741 cagcttgatt ttcccttttc gtagccattc cactttctct ttacgcaatt catcggctga
     1801 atgaactgtc actgggctgg catagccttt attttcaagt gcatttgcaa atttattcat
     1861 agcatcaatt tctggaaaga aaattaaagc cggctgatct ttcttcttca catcattcat
     1921 ccactggata agcttaggag ttattttccc tttagctaga ttctttttcc acgggccaat
     1981 ccagcacgtt ctcggcacag gcagtttctt tcggtgatat cgtccgggaa ttttcacaaa
     2041 attacgtttt cctcttacac actcttcttg ccactttttc tctggggttg ctgtgattat
     2101 tattgttgaa ccttcttttg ttctggcttt cataacggca tattctaaaa aaggatcttt
     2161 cgcataagga aatgcatcta cttcatcaat aaaaataact tgaaacgctt cataaaagcg
     2221 aataagctga tgggtcgtcg ctatcacgaa ctgctctcct tggtagttat cttttgagtc
     2281 tccatataga caaacaatat ctatgctagg gaaagcttct tttaaacgtg gaagaagctc
     2341 taaacaaaca tccactctcg gagaagcaac acaaattcta aagccttgtc gcaaagccca
     2401 gtccattcct tcaaacatca tctccgtttt tccagatccg gcaactgccc atagcaacat
     2461 atccgttttt gcttttaaat taacgactat cgcgttggat gcttttcgct gtcccgctga
     2521 caaagctcct tcccacctca ataatacttc ctttgtttct agtaataacc tagcatgttg
     2581 atagtataat ttttggcaac tatttactcg tcccatcaca atgcaatttc tgcaataaat
     2641 acaatcctct ctcttacata atgcacagga cattttgcca aataactgca catccgtatt
     2701 tccacatcga aagcatttgt ttgattctat tgctactact tctcttaagc cctctttact
     2761 ctctatttca cgttcttgat aaagccttcc cgggaagatg tccatctgta ttcacctccc
     2821 cttagttata cactttttct ttttttattg cagaaacgaa atccttgttt tcgaccgcat
     2881 acttataaac aaaacaagta tttcttttag acgaaaacga gtatttttgc catccaaaac
     2941 tactgaaaaa acaaatttag tctccatgaa aaaaatctcc agcttttagc tggagatttt
     3001 ttattttatt gaccaagtta agccaagcgc accttcaccc aaatgagttc caatgactgg
     3061 accaaaataa cttaattcaa atgttacttc tgggaatttc gcttctagtt gtgcaagcca
     3121 tgcttcaccc ttcgctagat cattgccatg aatgacataa gctttttctg ccgttttgtt
     3181 ttgaacggct ttttgaagaa tatcttcaat tcgtttcaat gccttttttt gcgttctaac
     3241 cttttcaaag aggacaattt gtttatcatt aaaatgaaga atcggtttaa tttgaagcaa
     3301 gctaccaaca agggcttgtg ctccattcaa acggccgcca cgctgtaaat tatttaaatc
     3361 atctaccata aaataagcat cttgtgcctg ttttatttta tctagttttt ggataatctg
     3421 gtccagcggc tcatttgcca aagccatttc agctgcttta actacaaaca ttccttgcgc
     3481 catgcaagaa agctcagaat cataagcgac gacatttagc ccctcaatta actctcctgc
     3541 tgaagccgca ttctgaaacg ttccactaat accgcttgat agatgaatac taattacagt
     3601 atcaaaacct tgttctttca gctgttcgaa caagtgaatg aaatctcctg gggcaggttg
     3661 agaggaagtt gggaaattct cagcttcttt tacttttctg taaaaatcag ccgcagataa
     3721 ctcctcacct tcacgataag attttccgtc aattattaca gaaagtggca cgacattaat
     3781 tcgtagctgc tctttcactt catttggcaa ataagttgtg ctgtcagtaa ccactgctat
     3841 tttttcgttc atatagtccc cctgatattt ctttagcgaa tatataccca gccgtgcttg
     3901 attgccgtta ccaccgcttg agtcctatca ttcactttca ttttttgtaa aatactactt
     3961 acatggtttt ttactgtttt ttcactaatg aaaagtgtct ccccaattcc gcggttactt
     4021 tttccatcgg taagaagttg caatacctcg cactctctat gcgttaagat gtgtagtggc
     4081 attttgactt caggttgttg gtagccataa acaccttgag aagtgttagt gcttgctaaa
     4141 tggcggtatt cacgaattaa tttaatcgct acacgtggat gaatatacgc gcctccatta
     4201 tcaacaattt ttacagcttc tacaagttca tgggcatcca tttcttttaa taaataaccg
     4261 actgctccag ctctaagcgc ttctgttaca tattcatctg tatcatgaat agtcaagacg
     4321 attactttga tgctaggaaa ttgacgtact agcatttcag ttgcatctag tccgttgaca
     4381 gttggcatat taatatccat taaaacaata tctggtttat attcgcgaac ttttgctacg
     4441 atatttttac cattttcagc ttccgctacg acctcaaaag aatcttccaa ctctaaaatt
     4501 cgcttgatac cttcgcgaaa caactgatga tcatctacaa tcatgatttt gagtgccata
     4561 atgactactc ctccttcact tatctaattt caccaagcct ctttgcaatc gaaaacatca
     4621 tcctttttaa gtagcaaaac cgcttaacct tataatccct gccataaaat tggcaattaa
     4681 acatttctct tttaagtact atttactcaa acttacctat tttcaacaca aactatacct
     4741 tgattatact gcatagccca agaaaattac tcctatatgc ctataaaatg taattgaaaa
     4801 ccagtctaaa gtaatagtag tttttattat aacacgaatt tgccgtcact tcacccactg
     4861 cacttagaaa aatatctata caatcgcttt gctttcggat aaaataaaag caggctaaat
     4921 gcatcaactt atggaggttc cttatgttgg atcattattt aaccatccat agcgatggaa
     4981 aacacgaaat aattattgaa aagtcccgct ttatctgcca cattaagcga gctacaacag
     5041 aaactgaagc acaaaccttt attcaagaaa tcaaaaaaga gcatcgtgat gctacccata
     5101 attgttctgc ttatattata ggagaaaatg accaatatca aaaagcgcat gacgacggag
     5161 aaccaagtgg aacagctggc gttccaatgc tagaggtctt aaaaaagaag tctttaaaaa
     5221 atgttgctgt tgtagttact cgttattttg gaggaacaaa actaggtgca ggcggcttag
     5281 tccgcgcata tggtaatgct gttagtgaag ctattcaagc aatcggtatt gtcgaatgca
     5341 aactagccac tattgttgaa tgctcttttg cttatccact tttaggaaaa atcgaaaatg
     5401 cgcttgaact aaaagcatat caaatcgaca aaaaagagtt cactgaaaaa gtagtacttc
     5461 atatttttgt tgataacgac gaactgcaag attttttcaa ctggatcact gagatttcaa
     5521 atggacaact tgaatataaa gaaggaccac aaaaatatag agaaaaggat gtcacttagt
     5581 atgtccacaa acgtatttat ccaattacca gatactattc ttactaaacg aactatatta
     5641 aaaaaaacct ctattgcaga tgctactaca ttatttgata tttggtctga tgatgaggta
     5701 gctcagttta tgaacatcga aaaattctct actattcttc aagcagaaga aatgattcaa
     5761 gcaattgaaa atgaaccaaa tgcttgcaga tacaccattt tcacaactga tgattcttta
     5821 catgcaattg gttcgcttgg aattaatgat attaacaaaa cgaaccagac aatcgaaatt
     5881 ggctatgaac tagcaaaaag tcattggcgc caaggtttta tgtttgaaat tttgacaaca
     5941 tttttaacca ctgtaaagcc ctatcttccc tataaagtgc ttacagcaaa agttctacca
     6001 gataatgtag cttcaatcaa actactgaaa aagcttggtt ttgagcttac cacaactggg
     6061 caagaactag atttacattc tggtaggatt tgtgaaatca gtaatta
//
LOCUS       DABQVC010000169         6092 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.169,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000169 DABQVC010000000
VERSION     DABQVC010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6092
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.169"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(9..491)
                     /locus_tag="IBJ56_002323"
     CDS             complement(9..491)
                     /locus_tag="IBJ56_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HAM3418570.1"
                     /translation="MTDLYYDTLHFSDTELYFAATKTGLFYVGTKAEKIQSAKRSPEK
                     MNMYKEELVAYLNGELTYFTVPMDLSATPLQLEVFHALEAIPYGETRTYTEIAAQINR
                     PKAVRAVGTAIGRNPLLFIIPCHRVIGKNGKLTGYSGGIGMKESLLKLEKAKINQFSF
                     "
     gene            637..1197
                     /locus_tag="IBJ56_002324"
     CDS             637..1197
                     /locus_tag="IBJ56_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012580857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylphosphotriester-DNA--protein-cysteine
                     methyltransferase family protein"
                     /protein_id="HAM3418571.1"
                     /translation="MSDYYLTKKRWQAISTNDKTADGTFFYGVTSTKIFCYPSCKSRL
                     PKKENIVIFHSAEEAFSHGYRACKRCKSGGTALPDTEWITNIEMYIKENFAKPLTLQI
                     IADDCHGSPYHLHRTFKRITMITPITYLENVRISYAKMQLTSTNQSIETIGKMAGFPN
                     PSHFSTTFKRHTGLSPNQFRKTIIKN"
     gene            1219..2088
                     /locus_tag="IBJ56_002325"
     CDS             1219..2088
                     /locus_tag="IBJ56_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HAM3418572.1"
                     /translation="MTHVTLPILEDWEGLSLTTILQEKFHLGKKARHEIRMSQNVLLN
                     NKPLDDWNTPLFVGASLSLPVFLHDKIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPND
                     SYETDTCANAVQYYLEKTGQDANALAVHRLDQTTSGLVLFAKNKLAIAGLSWQMENRA
                     IHRTYLAAVDGTWGLVMQTINKPIGEDRHHGSRRQISPYGQPAVTHVKVLENDNEKNT
                     SLVECQIETGRTHQIRVHLSGIGHPIIGDTLYGGSPRANRIMLHAEKLHLNHPFKGKE
                     MNFSAPAGDDWVF"
     gene            complement(2101..2493)
                     /locus_tag="IBJ56_002326"
     CDS             complement(2101..2493)
                     /locus_tag="IBJ56_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418573.1"
                     /translation="MLHHVEIYVADLEESRLFWSGLLEELSYELYQTWNEGFSYKFAD
                     TYLVFVQTEEPFVAEGYHRKRVGLNHLAFHGGTKERVDDFRAKLKAKGTKLLYEERYP
                     FAGGENHYAVFFEDPNGIKVEICTEVTT"
     gene            complement(2495..3151)
                     /locus_tag="IBJ56_002327"
     CDS             complement(2495..3151)
                     /locus_tag="IBJ56_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HAM3418574.1"
                     /translation="MTDIQMVFRANRSLIDAPPMEAYMKNQFTFLGIRAGERKKLVAE
                     YLKENGAPQDLLGFTIALFAEEEREFQYVAIDLLSRYGKKQPSEAIKVYEQLIVTKSW
                     WDTVDGLAGTVVSNHFKLYPELIPTYNEAWINGDNIWLARTAILFQLKYKEETDVDLL
                     FSNCEKWLDSKEFFIQKAIGWALRQYAKVDSGAVRQFVNSHSLAPLSRREALKHIGEA
                     "
     gene            complement(3148..4032)
                     /locus_tag="IBJ56_002328"
     CDS             complement(3148..4032)
                     /locus_tag="IBJ56_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAM3418575.1"
                     /translation="MTKTLQDRMILPGNETIPYIGLGVFQVTEQEFIAGAVEKAIEVG
                     YRLFDTAAVYNNEAIVGQAIASSAVSREELFISSKVWNGDLGFDETLFAFERTLRNLK
                     LDYLDLYLIHWPVAGKYRDSWRAMERLHDEKLIKSIGVANFKQHHLSDLLVAANEKPV
                     LNQVETHPLLPQNDLRKYLAEQNIAHAAWSPLAKGILMQNPVITEIAKKHQASVDQVI
                     LQWHLNRNTIIFPKSITSSRIEENSRLSYFQLDAIDMEKIDRLETGKRVGPDPDDLEY
                     FLSSIERERAYLSGENAE"
     gene            4419..5039
                     /locus_tag="IBJ56_002329"
     CDS             4419..5039
                     /locus_tag="IBJ56_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HAM3418576.1"
                     /translation="MAFKNKKDRFASLLHDIAVNLHEGANFFATYNINSVEDLHTFSN
                     KIKEYETAGDSMVHKMIMELNDAFITPIEREDMLELTNRLDDVMDALDETAFSLEICQ
                     ITHYDEYMTKFIQAIQASTVEIEKAVDLVFDKKLKDVRKLAIQIKDYESQCDDVYRES
                     LIQLFQNEKDPIKLIRLREVYEKLEDIADSCQSVANTLESIVMKNA"
     gene            5053..6051
                     /locus_tag="IBJ56_002330"
     CDS             5053..6051
                     /locus_tag="IBJ56_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HAM3418577.1"
                     /translation="MEGMFLITLVIVLAALAFDLINGFHDTANAIATSVSTKALKPRH
                     AIILAAVMNFVGAISFTGVAKTITKDIVNPFDLDHGELVILAALLSAIAWNLITWYFG
                     IPSSSSHALIGSIAGAAIASAGFAAIEYSGFTKIIVGLLVSPVLAFVVGYTIYSLFKV
                     FLKNLNLATTNRRFRMIQVGTAALQSYTHGTNDAQKSMGIITMALIASGFQTTDDVQL
                     WVQVSCAIAMAIGTSIGGWKIIKTVGGKIMKIKPVNGVAADLSSVIIIFGATFIHLPV
                     STTHVISSSILGVGTAHRVKGVKWDTAQRMIITWVITLPISATIAALIFYVLRFIL"
BASE COUNT         1877 a         1276 c         1033 g         1906 t
ORIGIN      
        1 ttctcttttt aaaaagaaaa ttgatttatt tttgcttttt caagttttaa gagtgattct
       61 ttcatcccta tccccccgct ataacctgtt aatttgccat ttttaccaat tactctgtgg
      121 catggaataa tgaaaagtag tgggtttctt ccgattgccg ttccaactgc gcgcacggct
      181 ttggggcgat ttatctgtgc tgcaatttct gtatacgttc tagtttctcc ataaggaata
      241 gcttccaatg cgtgaaatac ttcaagttgg agaggagtag cggacaaatc cattggtaca
      301 gtaaaatacg taagttctcc gttcaaataa gcgaccaatt cttctttata catgttcatt
      361 ttttctgggc ttcgcttggc tgattgaatc ttttctgcct ttgttccaac gtaaaatagc
      421 ccagttttcg tcgctgcgaa ataaagctct gtgtctgaaa aatgaagcgt atcataatat
      481 aaatctgtca tttccttcac ctctttctaa tgttaattat acgctaaatt gaataacatt
      541 tctaaccagt ttcactataa gagcaagatt agaaaagttt tcctcgcaat ttaccttcat
      601 aacgtttatg attaataaga agttgaggtg ataacattgt cggattatta cttaaccaaa
      661 aaaagatggc aagcaatttc aacgaatgat aagactgctg atggcacatt tttctatggt
      721 gttacatcta cgaagatttt ttgctatcct tcttgtaaat cacgattacc aaaaaaagaa
      781 aacatcgtta ttttccatag tgcggaggaa gctttttcgc atggctaccg ggcttgtaaa
      841 cgatgtaaat ctggtggtac tgcgctacct gatacggagt ggataacaaa tatcgaaatg
      901 tatattaaag aaaattttgc caaaccgctc actttacaaa tcattgcgga tgattgccac
      961 ggaagtccgt accacttaca ccgaacattt aagcgaatca cgatgattac acccattact
     1021 taccttgaga acgtccggat tagttacgca aaaatgcagc taacctcgac caaccaatcc
     1081 attgaaacta ttggaaaaat ggctggcttt ccaaacccct ctcatttttc tactacattt
     1141 aaaagacata ccggtttgtc accaaaccaa tttcgaaaaa caataataaa aaattaaatt
     1201 agaacggatg atttgactat gacacatgta acattaccta ttttagaaga ctgggaaggc
     1261 ctttcactaa ctactatttt gcaagaaaaa tttcatctcg gtaaaaaagc gcgacatgaa
     1321 attcgcatgt ctcaaaatgt tttgctaaac aataagccac tggatgattg gaatacgcca
     1381 cttttcgttg gagcgagtct ttctttacca gttttcttac atgacaaaat ccctgtctat
     1441 gagtacgact tagaaattat ttatgaagat gattttttac tagtagtgaa taaaccagtt
     1501 gatatgaaaa ctcacccaaa tgatagttat gaaacagata cttgcgcgaa tgccgtgcaa
     1561 tattacttag aaaaaacagg ccaagatgcg aacgccctag cagttcaccg tcttgatcaa
     1621 actacttccg gtttagtact gtttgctaaa aacaaattag ctatcgccgg cttatcttgg
     1681 caaatggaaa atagagcgat tcaccggact tatctcgctg cagttgatgg tacttgggga
     1741 ctcgtgatgc aaacaatcaa caaaccaatt ggcgaagatc gtcaccacgg ttccagacgc
     1801 caaatcagcc catacggtca accagcagta acgcatgtta aagtattaga aaatgataac
     1861 gaaaaaaaca cctctcttgt agaatgccaa atcgaaactg gtcggacgca ccaaattcgc
     1921 gttcatttaa gcggaattgg ccatccaatt attggcgata cgctttatgg tggttcccct
     1981 cgtgctaatc gcatcatgct acatgccgaa aaattacatt taaatcatcc tttcaaaggt
     2041 aaagaaatga atttttctgc tccagctgga gatgattggg tattttaaaa agccacaaca
     2101 ttacgttgtg acttctgtac aaatttctac ttttattcca tttggatctt caaaaaatac
     2161 agcataatga ttttcaccgc cagcaaaagg atatctttct tcatatagaa gtttggttcc
     2221 ttttgctttt aatttggctc gaaaatcatc cacccgttct tttgtgccac catgaaatgc
     2281 caaatgattg agcccaactc gtttgcgatg ataaccttcc gcgacaaacg gttcctctgt
     2341 ttgcacaaat actaaatacg tatcggcgaa tttataacta aagccttcat tccaagtctg
     2401 gtataactca taagaaagtt cttctaacag ccctgaccaa aacaagcgac tttcttctaa
     2461 atcagctaca tatatttcca catgatgtaa catatcacgc ctccccgatg tgtttaagtg
     2521 cttctcttcg gcttaacggc gcaagcgagt gactatttac aaactgacga actgccccgc
     2581 tatcgacttt tgcatattgt ctgagcgccc atccaatcgc tttttgaata aagaattctt
     2641 tggaatccag ccatttttcg caattggaaa aaagtaaatc tacatcggtt tcttctttgt
     2701 acttcaattg aaataaaatt gccgttcgag cgagccaaat gttatctcca tttatccacg
     2761 cttcattata ggtaggaatc aactcaggat atagtttaaa atgattactt actaccgttc
     2821 ccgctaggcc atccacagta tcccaccaag atttcgttac aattaattgc tcatatactt
     2881 ttatcgcctc actaggctgt tttttaccgt aacggcttaa taaatcaatc gccacatact
     2941 gaaattcacg ctcttcttca gcaaataagg ctatcgtaaa tccaagtaaa tcttgcggcg
     3001 ccccattttc tttcaaatat tccgctacca atttttttcg ttcaccggct ctaattccca
     3061 aaaaagtaaa ttgatttttc atgtaagctt ccattggcgg agcatctatt aaagaacgat
     3121 tcgcgcggaa taccatttga atatctgtca ttccgcattc tcacctgata aataagcgcg
     3181 ttcccgttca atactactta aaaagtattc taaatcatct ggatctggtc caacacgttt
     3241 ccccgtttct aagcgatcaa ttttttccat atcaatggca tctagttgga aataggacaa
     3301 acgtgaattc tcctcaatcc gactagaagt aattgacttc ggaaaaataa tcgtattgcg
     3361 gttcaaatgc cattgtaaaa tcacttgatc tacagatgct tgatgttttt tcgcaatttc
     3421 tgtaatcacc ggattttgca ttaatattcc tttagccagc ggtgaccagg cagcgtgcgc
     3481 gatattctgt tccgccaaat acttacgaag gtcattttgc ggtaacagtg gatgcgtttc
     3541 cacttgattt aaaactggtt tttcatttgc agcaaccaat aagtcactta aatgatgttg
     3601 cttgaaattc gcaactccaa tagatttaat caatttttcg tcatgaagcc gctccatcgc
     3661 tcgccatgaa tcacggtatt tcccagctac aggccaatga attaaataca aatccaaata
     3721 atccaacttc aaattccgaa gtgttcgctc aaaagcaaat aacgtttcat caaagccaag
     3781 gtctccgttc cacactttcg aactaataaa taattcttct cgtgagactg cgctactagc
     3841 aattgcttgc ccaacaatcg cttcattatt ataaactgcc gctgtatcaa acaaacgata
     3901 acctacttca attgcctttt ccacagcacc agcgataaat tcttgttctg ttacttgaaa
     3961 tacaccaagt ccaatataag gaattgtctc attccccggt agtatcattc tgtcttgtaa
     4021 tgtttttgtc aaaacgaaac cctcctcacg aaaactgttt tgtgaacttt ttctcttaaa
     4081 tgaattatac actattttcg caaatttata ttttaaaacc agtataccga aatgcgcctt
     4141 actctcctaa taaaaagcca caaaaattct acttttttta ttcatttaat gaaataccta
     4201 aaaacagcca ttggaaacgc tgtcagaacg tttatttgca gagccgtcaa aaaaaagttt
     4261 cctatttatt cccatcctat gttagtatta atttgtggta aagatctatc aagtttttta
     4321 tttgttttcg ttaacttatc gttaagaaaa aagctccctt ttcaaagtaa aagcgagctg
     4381 attattaatg accaaaaatg atcgggggaa ttaagaaaat ggcttttaaa aataaaaaag
     4441 accgttttgc ttcgttgttg catgacattg cagtaaattt acatgaaggt gcaaatttct
     4501 ttgcaactta caacattaat tcggtggagg atttacatac tttctcgaat aaaatcaaag
     4561 aatatgaaac agctggagac tccatggttc acaaaatgat tatggaatta aacgacgctt
     4621 tcattacacc aatcgaacgt gaggacatgt tagaacttac taaccgctta gacgacgtaa
     4681 tggatgcact tgatgaaaca gctttctcac tagaaatctg ccaaatcact cattatgatg
     4741 aatacatgac taaatttatc caagctattc aagcaagcac tgttgaaatt gaaaaagcag
     4801 ttgaccttgt ttttgataaa aaactaaaag acgttcgtaa acttgcgatt caaattaaag
     4861 attacgaatc tcaatgtgat gatgtttacc gcgaatcact aatccaactt ttccaaaacg
     4921 aaaaagatcc aattaaacta attcgtctaa gagaagttta tgaaaaatta gaagacattg
     4981 ctgatagttg tcaaagcgtt gcgaatacgc ttgaatcaat tgtcatgaaa aatgcgtaag
     5041 gggcctagat agatggaagg aatgtttctc atcaccctcg tcatcgtact tgccgcgcta
     5101 gcatttgacc tgatcaatgg gtttcatgat acagctaacg caattgcgac tagtgtctct
     5161 acaaaagcct taaaaccacg acatgcgatt attcttgctg ccgtaatgaa ctttgtgggt
     5221 gctatttcat tcacaggggt tgctaaaaca attacaaaag acattgttaa cccattcgac
     5281 ttagatcacg gcgaacttgt tattttagca gcattacttt cagctattgc ttggaactta
     5341 atcacttggt atttcggaat tcctagtagt tcctcccatg ccttgattgg atccatcgcc
     5401 ggtgcagcca ttgcatcagc cggatttgca gcaattgaat acagcggatt tactaaaatc
     5461 attgttggtt tattagtatc tcctgtactt gctttcgtag tcggttacac gatatattca
     5521 ctcttcaagg ttttcctgaa gaacttaaac ttagccacga ccaatcggcg cttccggatg
     5581 attcaagtcg gaactgctgc gctacaatct tacacacacg gaactaatga tgcacagaaa
     5641 tcaatgggga ttatcacaat ggcattaatt gctagtggtt tccaaacaac cgatgatgtg
     5701 caattatggg ttcaagtatc ctgtgcgatt gccatggcga ttggtacgag tattggtggt
     5761 tggaaaatca tcaaaactgt tggcggtaaa atcatgaaaa tcaaaccagt taatggtgta
     5821 gcggctgatt taagttccgt tatcattatt ttcggtgcta ctttcattca tttaccagtt
     5881 agtacaacac acgtaatcag ctcttctatc cttggtgtcg gaacagctca ccgtgtcaaa
     5941 ggtgtcaaat gggatactgc ccaacgtatg attattactt gggttatcac acttcctatt
     6001 tcagcaacaa ttgcagcact tatcttctat gtactaagat ttattcttta atattattta
     6061 gagccttgct aacgcgaggc tctttttata ca
//
LOCUS       DABQVC010000170         6088 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.170,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000170 DABQVC010000000
VERSION     DABQVC010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6088
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.170"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            136..1542
                     /locus_tag="IBJ56_002331"
     CDS             136..1542
                     /locus_tag="IBJ56_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HAM3418578.1"
                     /translation="MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGK
                     EIYKKMSKFWGHIFLINFAVGVVTGIIQEFQFGMNWSDYSRFVGDVFGAPLAIEALLA
                     FFMESTFIGLWIFGWDKLGKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKN
                     GRAEMNDFLQLITNGQLLVEFPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQ
                     IAMVMAVIGGFGVAFSGHSQAQYLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEE
                     KKNEWEVNVPYALSFLSYGTLTGSVEGMNTLQKQYEEKYGEGDYIPPVKTAFWSFRIM
                     VGAGMLMILFALIGIVLAWKKKLVNAKWYLRFMIPMIGFPFLANSMGWIMTEIGRQPW
                     VVFGYMKTADAVSPNVSSGQILFSIIAFSTIYTILAILLVYLFIREIKKGPDGHKPEK
                     AEISVDPFDKGDESFVTK"
     gene            1529..2542
                     /gene="cydB"
                     /locus_tag="IBJ56_002332"
     CDS             1529..2542
                     /gene="cydB"
                     /locus_tag="IBJ56_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HAM3418579.1"
                     /translation="MSLNELWFLLIAILFIGFFFLEGFDFGVGMSTRFMARNALERRV
                     LVNTIGPFWDANEVWLLTAGGAIFAAFPNWYATMFSGYYIPLVFLLLALIGRGVSFEF
                     RGQKDSPLWIKTWDWVIFFGSILPPFLFGVLFASLIQGMPINSDMDMYAGFFDYITVF
                     SVWGGVTITLMCLLHGLLFITLRTEEDIQDRARRMAKRVWFITVPALVIFVVLAYFNT
                     DMFQVRPVLVPLMIGIVVVMYVLSALFIWKDRDILAFTFGGLGIVFTIATIFVSLFPR
                     VMISSINSAFDLTIENAASGQYSLSVMTIVAVTLLPFVLGYQIWSYYVFRKRVSSKEK
                     MTY"
     gene            2542..4266
                     /gene="cydD"
                     /locus_tag="IBJ56_002333"
     CDS             2542..4266
                     /gene="cydD"
                     /locus_tag="IBJ56_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductant ABC exporter subunit CydD"
                     /protein_id="HAM3418580.1"
                     /translation="MGKDLRNYKGIKKIMAILAVFTLVQGAAIIVMAITLARAITDLF
                     HEHAFQSVTIQIGLFAGAYFLRHFLNVWKKQIVYRYAAKLAKTMREELLDSLFALGPR
                     FARAEGTGKVVTMVMEGVADFRNYLELFLPKMMNMAIIPAMIWVYIAFQDWTSAFILM
                     ITLPILIVFMIILGLAAKKQADSQFETYRVLSNHFVDSLKGLETLRYLGLSHDHEGKI
                     ASVSSRYRKATMKTLRVAFMSSFALDFFTMLSIALVALFLGLGLIDGNMNLPIALSVL
                     ILAPEYFLPVREVGSDYHATLDGQEAGRVIQGIIDQAKAEKPETNALPLTTFAENTEF
                     SFENITVKHDVDAADSLHEASFTVKGFEKVGIIGATGAGKSTLIDVLSGFLTPTSGGF
                     RWNGESGASLASSDWQTQVTYIPQHPYLFHDTIAGNIRFYHPNSTDEEMKKAAESAGL
                     NKLVAGLEDGYETLVGEAGRMLSGGQEQRVALARAFLTDRPIVLMDEPTAHLDIETEY
                     ELKKPMLDLFENRLVFFATHRLHWMLEMDRIIVLDHGAVVETGTHEELLSRKGFYYNL
                     VKAQLEEV"
     gene            4266..6005
                     /gene="cydC"
                     /locus_tag="IBJ56_002334"
     CDS             4266..6005
                     /gene="cydC"
                     /locus_tag="IBJ56_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductant ABC exporter subunit CydC"
                     /protein_id="HAM3418581.1"
                     /translation="MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLIS
                     KSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEP
                     QALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFA
                     ALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKT
                     FISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTM
                     IAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPTLPTFEEETKEIERINT
                     ENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLP
                     TAGKVTMNGVEVENLRPQIPEITSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAK
                     KVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDP
                     ITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPR
                     YKRLYQLDRPIEL"
BASE COUNT         1682 a         1114 c         1381 g         1911 t
ORIGIN      
        1 ttattttatt atgctttgtg aattacagag caactgaacg cgtcactttg ggcggttttt
       61 cacatgattt ttaagagaga agcacaaatc agggaacgaa gcagtaattt ttagcacaaa
      121 aaggaggaga aaagggtgga taaactattt ttagcccgtt ttcaattcgc atcaacaacg
      181 attttccatt tcttatttgt accactttca attggacttg tatttatggt tgctcttatg
      241 gaaacgttgt atgtcgtgaa ggggaaagaa atttacaaaa aaatgtcgaa gttttgggga
      301 cacatattcc ttattaactt cgcagtcggt gtcgtaaccg gtattattca agaattccag
      361 tttgggatga actggtcgga ttactctaga tttgttgggg acgtattcgg agcaccactt
      421 gcaatcgaag cgttacttgc attctttatg gaatctacgt ttatcggact ttggattttt
      481 ggttgggaca aacttggcaa aaaacttcat ttagcatgta tttggcttgt ttcaatcgga
      541 acaattatgt ctagtttctg gattttagca gcgaactcat ttatgcaaca tccggttggt
      601 tttgaattta agaacggccg cgcagaaatg aatgacttct tgcaacttat tactaatgga
      661 caactacttg tggagttccc gcacgttata ttcggggcat ttgccactgg ggcctttttc
      721 attgctggtg tcagtgcgta taagatgctc aaaaaacaag atgtcgcctt ctttaaacga
      781 tcattccaaa ttgcaatggt catggcggta atcggtggct ttggtgtggc tttcagtggt
      841 cactcacaag cacaatactt ggttaaaaca caaccaatga aaatggcagc aacagagggg
      901 atatgggaag atacagccga cccagctccg tggacgatga ttgccaagat caacccagaa
      961 gagaagaaaa acgaatggga agtcaatgtc ccttacgcgc taagtttctt atcttacgga
     1021 acattaactg gtagcgtgga aggtatgaac acgctgcaaa aacaatacga agaaaaatat
     1081 ggtgaaggtg actacatccc accagttaaa acagcatttt ggagcttccg tatcatggtt
     1141 ggcgcaggta tgttaatgat tttattcgca ttaattggta tcgtgcttgc ttggaagaaa
     1201 aaactcgtta atgcaaaatg gtatttacgt ttcatgattc caatgattgg cttcccgttc
     1261 ctagcgaact ccatgggttg gattatgaca gaaatagggc gacaaccatg ggtagttttc
     1321 ggttacatga aaaccgctga tgccgtatcg ccaaacgttt catcaggaca aattttgttc
     1381 tcgataattg cgttctcgac aatttatacg attttagcca ttctattggt ttacttgttt
     1441 atacgtgaaa ttaaaaaagg accagacgga cacaaaccag aaaaagcaga gatttccgta
     1501 gatccgtttg ataaggggga tgaaagcttt gtcactaaat gagttatggt ttctattaat
     1561 cgccatctta ttcattggat tcttcttcct tgaaggtttt gactttggtg ttgggatgtc
     1621 tacacgattt atggctagaa atgcactgga acgccgcgtg ctcgttaata cgattgggcc
     1681 gttctgggat gcaaatgaag tttggttact aactgctggg ggcgcgattt tcgccgcttt
     1741 ccctaactgg tatgcaacca tgtttagtgg ttattatatt ccgctagtat tcttattact
     1801 tgcgctaatt ggccgtggtg tttcttttga attccgtggt caaaaagatt caccgctttg
     1861 gataaaaaca tgggattggg ttattttctt cggtagtatt ttaccgccat tcctatttgg
     1921 tgtattattt gctagcttga ttcaaggtat gccgattaat agtgatatgg atatgtacgc
     1981 tgggttcttt gattacatta ccgtattctc cgtatggggt ggcgtgacga ttacgctcat
     2041 gtgcctactt cacggattac tatttattac tttacgtaca gaagaggata ttcaagaccg
     2101 tgctcgtcgt atggcgaaac gtgtttggtt tattactgta ccagctctag taattttcgt
     2161 tgtacttgct tacttcaata ctgacatgtt ccaagttaga cctgtacttg taccactgat
     2221 gattggaatt gtagtcgtta tgtacgtgct atctgccctg tttatttgga aagatcgtga
     2281 tattttggca tttacattcg gcggacttgg aattgtcttc acgattgcga cgattttcgt
     2341 gtcactattc ccacgtgtaa tgatcagttc tatcaacagt gcgtttgatt taactataga
     2401 aaatgcagct tccggacaat attcgcttag tgtgatgacg atagttgccg ttacgctact
     2461 gccgtttgtt cttggttacc aaatttggag ctactatgtt ttccgtaagc gcgtttctag
     2521 taaggagaaa atgacgtatt aatgggaaaa gatttaagga actacaaagg aattaaaaaa
     2581 ataatggcga ttctcgcagt tttcacgctt gttcaaggtg ctgcgattat cgtgatggcg
     2641 ataactttag ctcgtgcgat tactgactta tttcacgagc acgcgtttca atcagtcaca
     2701 atacaaatag gtctcttcgc gggggcctat ttcttgcgtc actttttgaa tgtatggaaa
     2761 aaacaaatcg tttaccgtta tgctgcgaaa ctagcgaaaa cgatgcggga agagttgctt
     2821 gatagtttgt tcgcacttgg accgcgtttt gctcgtgcgg aaggaactgg gaaagtggtc
     2881 acgatggtta tggaaggtgt ggcggatttc cgaaattact tggaactgtt tttacctaaa
     2941 atgatgaata tggcaattat tccagcgatg atttgggtgt atattgcttt tcaagactgg
     3001 acttctgctt ttattttgat gattactttg ccgattttaa ttgtatttat gattattcta
     3061 ggattagccg cgaaaaaaca agcagattcc caatttgaaa cgtatcgcgt gctctctaac
     3121 cactttgtag attcgttgaa gggtttggaa acgttgcggt atttggggct tagtcacgac
     3181 catgaaggga aaattgcttc ggttagttcg cgttatcgta aagccacgat gaaaacgttg
     3241 cgtgtggcat ttatgtcgtc attcgcgcta gatttcttta cgatgttatc gattgcgctc
     3301 gttgcgctgt tcctaggtct tggtctcatt gacggtaaca tgaatttgcc aattgcgctt
     3361 agtgtcctaa tccttgcgcc agaatacttt ttaccagttc gtgaagttgg ctcggattat
     3421 catgctacac ttgatggtca agaggctggt cgcgttattc aaggaattat tgaccaagcc
     3481 aaagcagaaa aaccggaaac gaatgcacta cctttaacaa cttttgctga aaatacggag
     3541 ttttcgtttg aaaatattac tgtaaagcat gatgtagatg ctgcagattc gcttcatgaa
     3601 gccagtttta cggtaaaagg atttgaaaaa gttgggatta ttggtgcgac gggcgctggg
     3661 aaatctacct tgattgatgt tttgagtggc tttttgaccc cgacttctgg aggttttcgt
     3721 tggaatgggg aaagtggtgc gtcgcttgct tcgagtgatt ggcaaaccca agtcacttat
     3781 attccgcaac atccatacct tttccacgat acaattgctg gaaatattcg cttttatcat
     3841 cctaactcta cagatgagga aatgaaaaaa gcagcagaat ctgccggttt aaataagctt
     3901 gtagcgggac tggaagatgg ttatgaaacg cttgtcggag aagctgggcg gatgctgagt
     3961 ggtgggcaag aacagcgtgt cgcactggct cgtgcattct taacggatcg tccaattgtg
     4021 ttaatggatg agccaacagc ccacttagat attgaaacgg aatatgagtt aaaaaaacca
     4081 atgctagact tatttgaaaa tcgacttgtc tttttcgcga cgcatcgttt gcactggatg
     4141 ctcgaaatgg accgaattat tgttttagat cacggggctg tcgttgaaac tggaacgcac
     4201 gaagaattac tttcgcgtaa aggtttctat tacaatttag tcaaagccca attggaggaa
     4261 gtatgatgcg gaaaagtagc tggattatcc catatattaa agaaaaccgc ggcttgtttt
     4321 tacttgtcat cttccttgga acactaactt ttgcctctgc tggagcactt atgtttacgt
     4381 ctggacattt aatttcgaaa tcgtccttga tgccggaatc catcatggcg gtttatattt
     4441 cgacagttgg tgttcgtgca tttggtatta tgcgctccgt ttcacgctat gtggaacgcc
     4501 tttcgagcca ttcgcttgtc cttagaattc tggaaaagat gcgcgttcga ctgtatcgtt
     4561 tacttgagcc gcaagcgtta ctactaaaat cacgttataa aactggcgat attctgggcc
     4621 tcctcgcagg tgacattgag catttacaaa atttctattt aactacaatg ctaccggcaa
     4681 ttgttagcct cgtgctttac gcgggcgtcg ttatcgcgct tggagcattc tcgattccat
     4741 ttgctgcgct ctttgtactc ttgattggcc tccttgtgct cgttcttcca tgggtatcac
     4801 ttttatatgc tcgtggaaag aatgcttatc taaaacaagg gcgcaatagt ttatatcaaa
     4861 aatttaccga tgcagtgttt ggtattagtg attggaaatt cagtggacgt gaaaaaacat
     4921 ttatttctaa ctacgaaaaa gacgaggcag acatgcttcg aacagaaaat aaacagtttc
     4981 attttgttaa ttggcgcgat ttctttagtc agttagttgt tggctttatg gttatcgtga
     5041 tggtttattg gagtacagca gaatcacgtg atggagcctt ttctggaacg atgattgccg
     5101 cttttgtttt ggcaattatg gcgctagcag aagcgtttgt accagtttca agtgctatca
     5161 gtgacaaatc attataccaa gactcgcttg ctcgtttaga caaaatagaa gatccgacgc
     5221 taccaacttt tgaagaagaa acgaaagaaa tagagcgaat caacacagaa aatgttgttt
     5281 taaaagcaga aaatctaact ttcgcgtacg atgaaaagtc accagaaatc ttaaatggtt
     5341 ttgacttcac attgcaacaa ggtgaaaaag tggcgattat cggtcgaagt ggaacaggga
     5401 aatcaacttt tcttaaatta gttcaaggag ctttactgcc aacagctgga aaagtaacta
     5461 tgaacggcgt tgaagtggag aatttaagac cgcaaattcc tgaaataaca tcaatgttaa
     5521 atcagaaagc gcaccttttc agtacgaccg tcttaaacaa catccgcctt ggaaatcaag
     5581 atgcatcgga cgaagaagta tacgaagcgg cgaaaaaagt tcagttgcac gattttataa
     5641 tgagcatgcc agatggctat catacacaaa tgagtgaaat gggtgaacgt ttttcaggtg
     5701 gtgagcgtgg tcgtatcgct ctcgctcgga ttctactaca aaacacacca atcgttattt
     5761 tagacgaacc aacagttggt ctggacccaa ttacagaacg cgatttacta gcgactatct
     5821 ttgaaacgtt agcagataag tcactcatat gggtaacgca tcatttagtt ggtgccgaaa
     5881 aaatggaccg cgtcttgttt ttagaagagg gaaaaacgtt aatggaagga cctcatgctg
     5941 aattaatggc agaagaacca cgctataaac gactttatca actagatcgc ccgattgaat
     6001 tataaaatta agccttgcta agtacaatct tagcaaggtt tttttgtatc gcagttttaa
     6061 tatttgtaac aatattgtaa tttaaaat
//
LOCUS       DABQVC010000171         6065 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.171,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000171 DABQVC010000000
VERSION     DABQVC010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6065
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.171"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            130..471
                     /locus_tag="IBJ56_002335"
     CDS             130..471
                     /locus_tag="IBJ56_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HAM3418582.1"
                     /translation="MTDSNELTTELDSMAIILHAGNAKSCAFEALKEVKLQNISSFTQ
                     KITEAKDEIKLAHRAHAELLRKLSSENRMREVDLLLVHAEGHLSSTDIAVEMIRELGE
                     IYQWKWSLSNE"
     gene            464..1855
                     /locus_tag="IBJ56_002336"
     CDS             464..1855
                     /locus_tag="IBJ56_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HAM3418583.1"
                     /translation="MNNNFLWGGATASYQCEGAWNVDGKAESMWDYYLHEAGLENGDV
                     ASDHYHRYEEDIRMMKEGGQNSYRFSLSWPRIIKNRQGDINLKGIEFYQNLLDTCKKY
                     DIEPFVTLYHWDLPQYWEETGGWLDHDVCAAFEHYAKVCYDHFGDKITNWTTFNEPKW
                     FVANGYKIGNYPPGYQDTQKTMIAAYNVMYASALGVKAFKEGGYPGQIGIVHSYTPVN
                     GVDESIETKIAMRYADNYCNNWILDTAALGEFPVDLIAELAKSHDISFMKTDELQTIK
                     QNTVDFIGLNYYSRTLVKPYTGGETQLQFNHSGKKGESKVLIKNWFEQVKDPANETTE
                     WDTEIYPKGLQDGLIEAYERYQLPLYVTENGIGVREDVSVAKVDDTYRIAFMNDHINA
                     IFNAIDAGCDVRGYYAWSPFDLYSWKNGVEKRYGLVAVDFENNQIRKPKASYYWFKEM
                     IESQGKLIKRREF"
     gene            1872..2162
                     /locus_tag="IBJ56_002337"
     CDS             1872..2162
                     /locus_tag="IBJ56_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAM3418584.1"
                     /translation="MKNIMLVCNAGMSTGMLAKKIEAASGNTLNVTAYSESEYTDYLD
                     GVDLVLIGPQIRFLMPQIKQAVSVPVHAISPVKYGIMDGKGVYEDIQKLIGG"
     gene            2167..3480
                     /locus_tag="IBJ56_002338"
     CDS             2167..3480
                     /locus_tag="IBJ56_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3418585.1"
                     /translation="MRFNTISEKMDQYISPLANKLSQQRHLKATRDAFMSMLPITLFG
                     SIPIILKAAPVTDDTKNGFLLAWANFAEKYDLILNWISGITLGAMSLYICVGITYYLC
                     KHYHEDFLRPLMFSIAGFFMLVLNPIKMGWDGKEVDISFLDGRGILLSIFVAIVTVEG
                     YHWMRKKNVGRITMPDSVPASLSETFAALVPGIILMTFFSIIFIIFNLLDTTAIQFLY
                     EKMAPSFKAADSLPFTILSIFLVHLFWFFGVHDAALAGILGPIRDGNLSINAAEKMAG
                     QDLTNIFTTPFWTYFVIIGGSGSVLALAFLMMRSKSKQLSTVGKVGFLPSIFGISEPL
                     IFGTPLMLNPIFFFPFIFTSVFNGVITYLCMYFGIVGKTFAVFSWQMPAPIGAFLSTM
                     DWRAIVLVFILIFLNGLMYYPFLKVYEKNLVALEKEAEEENIAAN"
     gene            3579..5450
                     /locus_tag="IBJ56_002339"
     CDS             3579..5450
                     /locus_tag="IBJ56_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HAM3418586.1"
                     /translation="MTISERQRSLLEKLNDSQKTVTAKALSEMLGVSSKTVRNDIVQI
                     NQSFSSTIIASKAGKGYFLTPNEQLSQINLTKNSENLHFELLRHIIEQDHTNFYDLAD
                     QFFISESTLARIIKELNAVIAEKDESLCIIRKSNELLTEGGEEEKRRIFNLFLNQEIE
                     NHQLSLDKYADYFDYCNLKQLSELIIAYHKKNDFFMNDFSTISFILHIAVLIERISMG
                     SYIQRTALTEQDKTSLEMAEHLAETLENELQINIPTQELSYIARLYSGKLTTTSTIDA
                     QVFGSVVTRLLEAVDQNFHIDFSADEKIATYLVAHISALYKRANHKQYLTNPLTEELK
                     NKFPFIYNVSVYASAFIQKELAITFPDDEIAYIALHFLSASETINHGKKRKILLVSPY
                     GAGSQRLIHNQLKKIADFSIDLLVSQSIFDIKQFTLDKEIHLIITAEPLNLTTDIPVY
                     HYDLLLTETDLQKIKHILETKPKADSISRKFFKKELFFPKQNFKSKEEVITFLCEQLT
                     AFDYCDPDYVAKVFEREQLSSTCYGNYYAIPHAIQRSAKKNAVAVCSLDKPIDWGGNR
                     VKLVLLLTMKEERDNSFEELFGQLVTILNERSFVKKLAKQEDFQQFIELCEQKTLDS"
     gene            complement(5456..>6065)
                     /locus_tag="IBJ56_002340"
     CDS             complement(5456..>6065)
                     /locus_tag="IBJ56_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HAM3418587.1"
                     /translation="FLLLGVLSDFLTPYILGIFYPELNQMTRVMSVFGDVASPVRGAF
                     LVWSVVSGVFFVLALPAIYQSVVKTSRTLAILLASAIGLYGIGDCIFTGLFSIDTEQA
                     SWTFSTWVHNIGSGLGYAGFLIFPLFLVILYRKTGDKTRSNIYLVLLIVSLLSAGVYG
                     LARIPAVNDLPVLDKIGFCQRISFFFNYLPIVVFGIDRIRKP"
BASE COUNT         1987 a         1360 c         1132 g         1586 t
ORIGIN      
        1 atacccataa gagccacttt atttatacta tcctcctaaa ccaatttcca cttccaaagt
       61 ggcaaataat aatttcacct cccccatttt tccagctata gtaaagacaa atcaaaagga
      121 ggtctttacg tgacagatag caacgaacta acaacagaac tcgattccat ggcaatcatc
      181 ttacacgccg ggaatgcgaa aagttgtgct tttgaggcac tgaaagaagt aaaactgcaa
      241 aacatctcat ctttcactca gaaaattact gaagcgaaag atgagattaa actggcgcac
      301 cgagcgcacg cggaactttt acgaaaacta tcttcagaga accgaatgag agaggtggat
      361 ttactgcttg ttcatgcgga aggtcacttg tcttctacgg atattgccgt ggaaatgatt
      421 cgggaactgg gagaaattta tcaatggaaa tggagtttat ctaatgaata acaacttttt
      481 atggggaggt gccacggcct cttatcaatg tgaaggtgct tggaatgtgg atggcaaggc
      541 ggaatcgatg tgggattatt acttgcacga agcaggtctt gagaatggcg acgtggcgag
      601 cgatcactac caccgctacg aggaagacat tcggatgatg aaagaaggcg ggcaaaattc
      661 ctatcgtttt tccttatctt ggccgcggat tattaaaaat aggcaaggtg acatcaactt
      721 aaaagggatc gaattttatc aaaacttgct agatacgtgt aaaaaatatg acattgagcc
      781 gtttgtgaca ctttatcatt gggatttgcc gcaatattgg gaagaaactg gtggttggtt
      841 ggatcacgat gtttgcgccg catttgagca ttatgccaag gtttgttatg accactttgg
      901 cgataaaatc acgaattgga ctacgtttaa cgagccgaaa tggtttgttg ctaacggata
      961 taaaatcggc aactacccac ctggctatca agatacacaa aaaacgatga ttgccgctta
     1021 taatgtgatg tacgcgagtg ctttaggcgt caaagctttt aaagaaggtg gctatccagg
     1081 gcaaattggt attgttcaca gctacacgcc ggtgaacggt gtcgatgaaa gtattgaaac
     1141 aaaaattgcg atgcgctacg ctgataacta ttgcaacaac tggattctcg acacagccgc
     1201 acttggcgaa ttcccggtcg acctcattgc cgaactagca aaatcgcacg acatcagctt
     1261 tatgaaaaca gacgaactac aaacaattaa acaaaacact gtcgacttca tcggcttaaa
     1321 ttactattcg cgcacgctcg ttaaaccata cactggcggc gaaacccagc tacaatttaa
     1381 ccacagcggt aaaaaaggcg aaagtaaagt tctcatcaaa aactggttcg aacaagtgaa
     1441 ggatcccgcc aacgaaacaa ccgaatggga tacagaaatt tatccaaaag gcttacaaga
     1501 tggcttaatc gaggcttacg aacgctatca attaccactt tatgtgacag aaaacggcat
     1561 tggtgttcgc gaagatgttt cagtggcaaa agtagatgat acctaccgaa tcgcctttat
     1621 gaacgaccat attaacgcca ttttcaacgc aatcgatgct ggttgtgacg ttcgcggcta
     1681 ctacgcttgg tccccgttcg acctttactc ttggaaaaat ggtgtcgaaa agcgttacgg
     1741 acttgtagca gttgatttcg aaaacaacca aatcagaaaa ccaaaagctt cctactactg
     1801 gttcaaagaa atgattgaaa gtcagggaaa actcatcaaa cgaagagaat tttaaaaaaa
     1861 ggagcaggaa aatgaaaaat atcatgttag tttgtaatgc tggtatgtct acaggaatgc
     1921 ttgcgaaaaa aatagaagcc gcttctggca acacattaaa cgtcactgct tatagcgaat
     1981 ccgagtatac cgattatttg gacggtgtcg acctcgttct tatcggccct caaatccgtt
     2041 tccttatgcc acaaattaaa caggccgtca gcgtcccagt ccatgccatt tcaccagtaa
     2101 aatacggcat catggacggc aaaggggttt acgaagacat ccagaaatta ataggaggat
     2161 aaaaacatgc gatttaatac cattagcgaa aaaatggatc aatatatttc cccgctggct
     2221 aacaaactta gccagcaacg ccatttgaaa gcaaccagag atgcctttat gtccatgctg
     2281 ccaattacat tgtttggttc aattccgatt attttgaaag cggctccagt cacagatgat
     2341 acgaaaaatg gtttcctgct tgcttgggct aactttgctg aaaaatatga tttaatccta
     2401 aattggatta gcggaatcac acttggcgcc atgtcgttat atatttgcgt cggtatcacg
     2461 tattatttat gcaaacacta ccacgaagat ttcttacgcc cactcatgtt ttctatcgcc
     2521 ggtttcttta tgctcgtact taacccaatc aaaatgggtt gggacggcaa agaagtcgac
     2581 attagtttcc ttgatggacg cggaatatta ctctcgattt tcgtcgccat cgttaccgta
     2641 gaaggttatc actggatgcg caagaaaaat gtcggtcgaa taaccatgcc cgatagcgtt
     2701 ccagcctcac tatccgagac attcgcagcc ttagttcctg gtattatttt aatgaccttt
     2761 ttctcgatta tctttatcat tttcaacctg ctagacacaa ctgccatcca attcttatat
     2821 gaaaaaatgg cgccgagctt caaagcagcc gatagcttac cattcacgat tctaagtatt
     2881 ttcctagttc acttattctg gttcttcggt gtccacgatg ccgcacttgc cggaattcta
     2941 ggcccaattc gtgacggaaa cctttcaatc aacgccgctg aaaaaatggc tggtcaagat
     3001 ttgacgaata ttttcacgac accattctgg acatatttcg ttatcatcgg tggttctggt
     3061 tccgttctcg cacttgcctt tttaatgatg cgatccaagt ccaaacaact aagcaccgtc
     3121 gggaaagtcg gcttcttacc ttccatattc ggaatttctg agccgctaat tttcggaaca
     3181 ccactaatgc tgaatccgat tttcttcttc ccgttcattt tcacatccgt attcaatggt
     3241 gtcatcacgt atctttgtat gtatttcggg attgtcggaa aaacgttcgc cgtcttctcc
     3301 tggcaaatgc ccgcaccaat tggagcattt ctatccacca tggactggcg agccatcgtt
     3361 ctcgtattca tcctgatttt cttaaacggc ctaatgtact acccattcct aaaagtgtat
     3421 gagaaaaacc ttgtcgcttt agaaaaagaa gccgaagaag aaaacatcgc tgctaattaa
     3481 tagccactta aatagagatt gggacaaaaa aactcgtctc tttctctatt tggtgttgta
     3541 taataacaat aggttaaggg agaattaggg gggatataat gactatttca gaaaggcaac
     3601 gttcattgtt agaaaagctt aacgacagcc aaaagacagt aacagcaaaa gcactttcag
     3661 aaatgttagg cgtttcttcc aaaactgtgc gaaatgacat tgtgcaaatt aaccagtcat
     3721 ttagttccac aatcatcgca tcaaaagctg gaaaaggcta ctttctaacg ccaaacgagc
     3781 agctttcaca aataaatcta accaaaaata gcgaaaatct acattttgaa ttattacgcc
     3841 atattatcga acaagatcat accaatttct atgatttagc ggatcaattt ttcattagcg
     3901 aatcgacgtt agctcgtatt attaaagaac tcaacgcggt tatcgctgaa aaagatgagt
     3961 cgctttgtat tattcgaaaa agcaacgaac tactaaccga gggcggcgaa gaagaaaaac
     4021 ggcgcatctt caatctattc ctcaatcaag aaatcgaaaa ccatcaatta agcctagata
     4081 aatacgccga ttactttgat tactgcaatc taaagcaact ttccgagctt attattgcct
     4141 accacaaaaa gaacgatttt tttatgaatg atttctcaac gatttcgttc atcttgcata
     4201 tcgccgtttt aattgagcga attagtatgg ggagttatat tcaaagaacg gctttaacag
     4261 aacaagataa aactagtctt gaaatggcag agcatctagc cgaaacgtta gaaaatgaat
     4321 tgcaaatcaa tattccaacg caagaattaa gctatatcgc ccggctttat tccggcaaac
     4381 taacgacaac ttcaaccatt gacgcacaag tttttggcag cgttgtcact cggctccttg
     4441 aagcagtgga ccaaaatttc catatcgact tttccgctga tgaaaaaata gccacctatc
     4501 tagtggccca tatttcagcc ctatacaaaa gagccaatca caaacaatat ttaaccaatc
     4561 cactcaccga agaattaaaa aacaagttcc catttattta taacgtcagt gtttatgcct
     4621 ctgcctttat tcaaaaagag cttgcgatca ctttcccaga tgacgaaatc gcttatatcg
     4681 cgctacattt tttatctgct tcggaaacga ttaatcacgg taaaaaaaga aaaatcctct
     4741 tggtttcacc gtacggcgca ggtagccaac gtttaattca taatcaactt aagaaaattg
     4801 ccgatttttc gattgacttg ctcgtttctc aatctatttt tgatataaag cagttcacct
     4861 tagacaaaga aatccattta attatcaccg ccgaaccatt aaacctaaca actgacatcc
     4921 cagtctatca ttacgattta cttttaacag aaacagattt gcagaaaatc aagcacattt
     4981 tagaaactaa gcccaaagcc gattcgattt ccagaaaatt tttcaaaaaa gagctgttct
     5041 tcccaaaaca aaacttcaaa tcaaaagaag aagtaattac gtttctttgc gaacagttaa
     5101 ctgcattcga ctactgcgac cccgattacg tagcaaaagt atttgagcgc gaacaattat
     5161 caagcacctg ttatggcaac tactacgcca tcccgcatgc catccagcga agcgcgaaaa
     5221 aaaatgccgt cgccgtatgc tcacttgata aaccaatcga ctggggcgga aatcgcgtca
     5281 aactcgtcct cctgctcacc atgaaagaag aacgcgacaa ctcttttgaa gaattattcg
     5341 gccaactagt aaccatctta aacgaacgca gcttcgtcaa aaaactagca aaacaagaag
     5401 atttccagca atttatcgaa ctttgcgaac aaaaaaccct agattcttaa acaatctagg
     5461 gttttctaat ccgatcaatt ccaaaaacaa caatcggcaa ataattaaaa aagaaactaa
     5521 tccgctgaca aaaaccaatt ttatctaaaa ccggcaagtc attcacagca ggaatccgcg
     5581 caagcccata aacaccagcc gacagcaaac taacaatgag taaaactaga tagatattgc
     5641 tgcgggtttt atcgccagtt ttccggtaaa gaatgaccag aaacaacgga aaaatcaaaa
     5701 atcccgcata accaagcccc gagccaatat tatgcaccca agtcgaaaat gtccaactcg
     5761 cctgctccgt gtcaatacta aacaacccgg taaaaataca atcgccaatc ccatacaaac
     5821 caatcgcaga agcaagcaaa atcgccaaag tccgcgaagt tttaacaacg ctctgataaa
     5881 tcgccggcaa agcgagcaca aagaacaccc cagacaccac cgaccaaacc aaaaacgctc
     5941 cccgcaccgg actagccaca tccccaaaca cactcataac ccgcgtcatt tgatttaatt
     6001 ctgggtaaaa aattccaagt atgtaaggcg ttagaaaatc actcaaaacg ccgagtaata
     6061 aaaag
//
LOCUS       DABQVC010000172         6016 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.172,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000172 DABQVC010000000
VERSION     DABQVC010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6016
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.172"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(59..988)
                     /gene="hemH"
                     /locus_tag="IBJ56_002341"
     CDS             complement(59..988)
                     /gene="hemH"
                     /locus_tag="IBJ56_002341"
                     /EC_number="4.99.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HAM3418588.1"
                     /translation="MTKKVGLLVMAYGTPYKDEDIERYYTDIRHGHKPSEEMIADLRG
                     RYHAIGGLSPLAKITEAQAYGLEKALNESQDEVEFKAYIGLKHIEPFIEDAVEAMHKD
                     GIEEAISIVLAPHYSSFSVEAYNKRAKDAADKLGGLRIKAINDWYKQPKFIQMWADRI
                     NETAKQIPADELLDTVLIVSAHSLPEKIKQHNDPYPDQLQETADFIFEKVVVPHYALG
                     WQSEGKTGEPWLGPDVQDLTRELYGREKYKHFIYTPVGFVAEHLEVLYDNDYECKVVT
                     DEVGAIYHRPPMPNSDPEFLEVLRTVVWEKYSN"
     gene            complement(985..2046)
                     /gene="hemE"
                     /locus_tag="IBJ56_002342"
     CDS             complement(985..2046)
                     /gene="hemE"
                     /locus_tag="IBJ56_002342"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HAM3418589.1"
                     /translation="MTKITNDLFLKAARKEQVDRIPVWYMRQAGRSQPEYRKLKEKYS
                     LFEITHQPEICAYVTKLPVDQYGVDAAILYKDIMTPLPGMGVDVEIKSGIGPVIHNPI
                     RSFQDVEKLTMFKPEIEVPYVLDTIKLLADDMLDVPLIGFAGAPFTLASYMIEGGPSK
                     NYHQTKSFMYREPEVWAILMEKLGRMTANYLIAQINAGASAVQLFDSWVGALSRADYA
                     EYIRPVIEMIVREVKAVHPTTPIIMQAVGASHLLAEWETMPLDVVGVDWRETITSARK
                     KVPTKAIQGNLDPSTLLAPEKCLKEANRILQEGVLEPGYIFNLGHGVFPEVPPEMLKK
                     LTNYIHERSEILLKKDDIK"
     gene            2243..2746
                     /locus_tag="IBJ56_002343"
     CDS             2243..2746
                     /locus_tag="IBJ56_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HAM3418590.1"
                     /translation="MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGE
                     KLFQEGAEYRVLQSSGSLKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQS
                     TKLTKAMNMNKFLIISFWDSEVFFHDWKKTPLSKEITNIMKKNNTQSGFSHEDIYHYP
                     EFSHDAK"
     gene            complement(2785..4008)
                     /locus_tag="IBJ56_002344"
     CDS             complement(2785..4008)
                     /locus_tag="IBJ56_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418591.1"
                     /translation="MKMIFDSKALWKERFSAYTTEVMRYLRYMFNDHLLFVLVIGLGA
                     GIFYYAGWVKTLEPTFPVIPLMVILLTASIAISPVATLLKKPDIVYLIVQEKAMDSYF
                     TQAKIASFFMQLYVFVIVLGVCMPMYVEVTKVPYSQFFTLFIVLSMLKVWNIYFGWES
                     MKLEEADTTWMFIRVILNAILIYIALVAAPYISIPLVLVVLVASYYWLRTKTAKVTLR
                     WEYLVDKEEARMNRFYRLVNLFTDVPHLRGTVRRRSYLDFLYQPIPYAKRKTFAYLFS
                     RTFIRTNEYAGLYIRLTVIAVILLVFVQGFYLNIIFSLLFLYLTGFQFIPMLKHYDAQ
                     IMLRLYPINDRYRHRSFIHFLRILLLAQALLFSVIGIAQNGTISGMIILGINLAFVVI
                     FTFLYAPVRMKKMYE"
     gene            complement(3992..4744)
                     /locus_tag="IBJ56_002345"
     CDS             complement(3992..4744)
                     /locus_tag="IBJ56_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418592.1"
                     /translation="MALVEVEHLTGGYTKRPVLKDISFAIEEKQIVGLIGLNGAGKST
                     TIKHITGLMHPKQGTIKINNHQLVEDTETYRKQFSYIPETPVLYEELTLKEHLELTGM
                     AYGISEEELQARMKPLLKEFRLEKKLNWFPAHFSKGMKQKVMIMSAFLIEPKLYIIDE
                     PFVGLDPLGIQSLLNWMDEMRSKGASILMSTHILATAEKYCDTFIIIHQGEIRAEGTL
                     KDLQTNFEMPGASLDEIYIQLTKEEEADEDDI"
     gene            4905..5327
                     /locus_tag="IBJ56_002346"
     CDS             4905..5327
                     /locus_tag="IBJ56_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HAM3418593.1"
                     /translation="MDDCIFCKIVRGEIPSAKVYEDDEVYAFLDLGQVTEGHTLVIPK
                     KHARNTFDLPDETAAELFRRVPKIARALKEALPIQGLNILNNNEEVAFQSVFHCHIHL
                     IPRYSKSDDFGLKWKDNADWYTQERYQEIAELIAAKVD"
     gene            5357..5719
                     /locus_tag="IBJ56_002347"
     CDS             5357..5719
                     /locus_tag="IBJ56_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HAM3418594.1"
                     /translation="MNKKSLIFGILAGGAIGAAASVLFAPKSGNELRKDIVAKSGEAS
                     VILKELAYNANELIQSVQVLGTEGSTLLKDVSSDIMESVSKWNEEMEPEKKRLKDEIK
                     DMQKTISDLEKTLKKDNK"
     gene            5902..>6016
                     /locus_tag="IBJ56_002348"
     CDS             5902..>6016
                     /locus_tag="IBJ56_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HAM3418595.1"
                     /translation="MRCLKSINTERRDEFNRLFLKGILVWLAAVCICFLTQH"
BASE COUNT         1912 a         1180 c         1014 g         1910 t
ORIGIN      
        1 gttttctttg ttttaaaaaa atatgccgga ataacgaata tcccggcaag tactttattt
       61 aattgctata tttttcccaa acaaccgtcc ttaatacttc taagaattct gggtccgagt
      121 ttggcattgg tggtcggtga taaatcgcgc ccacttcatc ggtaactact ttacattcat
      181 aatcattatc atataaaacc tctaaatgtt cagccacaaa tccaactggt gtatagataa
      241 agtgtttata tttttctcga ccgtaaagtt ctcttgttaa atcttgtaca tcaggtccga
      301 gccacggctc cccagttttc ccttcacttt gccaacctaa cgcgtaatga ggtactacta
      361 ctttttcgaa aatgaaatct gctgtttctt gcagttgatc tgggtacggg tcattatgtt
      421 gtttaatttt ctccggtaaa ctgtgtgcgg aaacaattaa aacagtatcc aataattcat
      481 cagctggaat ttgttttgct gtttcgttaa ttctatcagc ccacatttga ataaatttgg
      541 gttgtttgta ccaatcattg attgctttga tacgaaggcc acctagttta tcagctgcat
      601 cttttgctct tttgttgtaa gcttcgacgc taaagctaga gtagtgtggc gctaaaacaa
      661 tcgagattgc ttcttctatt ccatctttat gcatagcttc tacagcgtct tcaataaaag
      721 gttcaatatg ttttaaaccg atatatgcct tgaattctac ttcgtcttgc gattcattta
      781 acgctttttc taatccatag gcttgtgctt cagtaatttt tgcgagtgga gataatccac
      841 caattgcatg gtatcttccg cgcaaatccg caatcatttc ttcacttggc ttatgaccat
      901 gacgaatatc tgtatagtaa cgttcaatat cttcatcttt gtacggtgtc ccgtatgcca
      961 ttacaagtag acctactttt ttagtcattt tatatcatcc ttttttaata gaatttcgct
     1021 acgttcatgg atgtaattag ttagtttctt caacatttct ggtggtactt ccgggaaaac
     1081 gccatgtcct aaattaaaaa tataacctgg ttctagtacg ccttcttgca aaatacgatt
     1141 tgcttctttt aaacatttct ctggtgcaag aagtgtggac ggatccagat ttccttgaat
     1201 tgcttttgtt ggaacttttt tccgagcact tgtgatggtt tcacgccaat cgacgccaac
     1261 aacatcaagc ggcattgttt cccattctgc taaaagatga ctcgcgccaa ctgcttgcat
     1321 aataattggg gttgttggat gaactgcttt cacttctcta acaatcattt cgattactgg
     1381 tcgaatgtat tcagcatagt cagctcgact aagtgcccct acccaagaat caaacaattg
     1441 caccgcagaa gcgcccgcat taatttgcgc aattaaataa ttcgcagtca ttcgaccaag
     1501 tttttccatt agtattgccc aaacttctgg ctcgcgatac ataaaacttt ttgtttggtg
     1561 ataatttttc gatggaccac cttctatcat atagctagcc aaagtaaatg gtgcacctgc
     1621 aaagccaatt aaaggtacat ctagcatatc atctgccaat aattttatcg tatctaggac
     1681 ataaggaact tctatttctg gtttgaacat tgtcagtttt tctacatctt ggaaagatct
     1741 aataggatta tgtatgactg gaccaatacc agatttgatt tcaacgtcta ctcccatccc
     1801 cggaagtggt gtcataatat ctttgtataa aatggctgca tcaacaccat attgatctac
     1861 tggtaatttg gttacgtaag cacatatttc tggctgatga gtaatttcaa atagagagta
     1921 tttttctttt aatttgcggt attctggttg ggatctccct gcttgtctca tataccaaac
     1981 cggaattcgg tcaacttgtt cttttcgcgc tgcttttaaa aataaatcat tcgttatttt
     2041 tgtcatcgag tcgcttccct tctttgttca tttacacaca ataggcaaca gaacaataaa
     2101 taacttctcc agataaaagg atactagaaa atttgtataa aaccaaacaa attgcctatc
     2161 agctgtttca attatgaaaa acgtggaaaa taaaggtgta atcatttttc ttaatggaat
     2221 aaaactgaaa gaaggactta ttatgaaaaa agtatttatc acgactggaa cggagcacta
     2281 ccttcgtcaa ttaatggcaa attatactgg cggaaatgtg acacttctac aaaacttttc
     2341 ccaatcactt ttgtatcaag agtcgactgg tgaaaaactt ttccaagaag gcgctgagta
     2401 tcgagtattg caaagcagtg gttccttaaa aggttttgga gtagtcgtct ttgaatatat
     2461 ccacctccgc gatgaagaaa tccctatttt cttgcaaatg tatcaacgag cgagtttgca
     2521 ttttagtgaa acgcctggct tgcaaagtac aaaactcaca aaagcgatga atatgaataa
     2581 atttttaatt atttcctttt gggattctga agtatttttt catgactgga aaaaaacacc
     2641 tttatccaaa gaaattacca atatcatgaa aaaaaataat actcaatctg gattctcaca
     2701 tgaagatatt tatcattatc cagaattttc ccatgatgct aaataggaaa aagcgatttg
     2761 gaccactcat ccaaatcgct ttttttattc gtacattttt ttcattctga ctggtgcata
     2821 aaggaacgta aagataacta caaaagccaa attaattcct aaaatgatca tcccactgat
     2881 ggtcccattt tgtgcaatgc caatcacact aaagagtagt gcttgagcga gtaacaaaat
     2941 ccgaagaaag tgaataaaac tgcgatgacg ataacgatca ttaatcggat aaagtcgtag
     3001 cataatttgt gcatcataat gttttaacat cgggatgaat tgaaaaccag ttaaatacaa
     3061 aaatagtagt gagaaaatga tatttaaata aaaaccttga acaaacacga gtaaaatcac
     3121 ggcaattacg gtaagtctaa tgtaaagacc ggcatattca tttgttctaa taaatgtccg
     3181 actgaacaaa taagcaaatg tttttctttt cgcataagga attggctgat aaagaaaatc
     3241 gagataactc cgtctccgaa ccgttcctcg caaatgaggt acatccgtaa atagattcac
     3301 taaacgatag aaccgattca tccgcgcttc ttctttatcc actaaatatt cccagcgtaa
     3361 agttactttt gccgttttag ttcgaagcca gtagtaactc gccacaagta ctaccaaaac
     3421 caaaggaata gaaatgtaag gtgcggcgac taacgcaata taaattaaaa tagcattaag
     3481 gataacacga ataaacatcc acgttgtatc cgcctcttct aatttcatac tttcccaacc
     3541 aaaataaatg ttccacactt ttagcatact gaggacaata aacaaagtga aaaactggct
     3601 gtacggaacc tttgtcactt ccacatacat cggcatacaa accccaagca caattacaaa
     3661 aacatataat tgcataaaga agctcgctat ttttgcttgg gtaaaataac tatccattgc
     3721 tttttcctgt acaattaagt aaacaatatc cggttttttc agcaacgtgg caacaggact
     3781 aatggcaatt gaagcagtga gtaaaataac cattaacgga ataacgggaa atgtgggttc
     3841 aagcgtcttc acccaaccag cgtaataaaa aatccccgct ccaagtccaa tcacaagcac
     3901 aaaaagcaaa tgatcattaa acatataacg aagatagcgc atgacttcgg tcgtataggc
     3961 actaaaacgt tctttccaaa gcgctttgct gtcaaatatc atcttcatca gcttcctctt
     4021 cctttgtcaa ctgaatgtaa atttcatcaa gtgaagctcc cggcatttcg aagtttgttt
     4081 gcaagtcttt cagcgttccc tctgcgcgaa tctcgccttg atgaataata atgaacgtat
     4141 cgcaatattt ctcagccgtt gcaagtatat gcgttgacat taaaatgctt gcacctttac
     4201 tacgcatttc gtccatccag ttaagtaatg actgaatacc aagtggatct aaaccaacaa
     4261 aaggctcatc aatgatatat aatttaggtt caattaagaa agccgacata atcattactt
     4321 tttgtttcat ccctttagaa aaatgggctg gaaaccaatt aagttttttc tctaaacgaa
     4381 actcctttaa aagaggcttc attcttgctt gcagttcttc ttctgatata ccataagcca
     4441 tacctgttaa ttctaaatgt tcttttaagg ttaattcttc atataataca ggtgtttcag
     4501 ggatataaga gaattgcttt ctatatgttt ctgtatcttc cactaattgg tgattattga
     4561 ttttaatcgt tccttgttta ggatgcatta gaccagttat atgcttaatg gtcgtacttt
     4621 tccctgcccc gtttagccca attaagccaa caatttgttt ttcttcaatc gcaaacgaaa
     4681 tatcttttaa gactggacgt ttggtatacc cgcccgtcag gtgttcaact tctactaaag
     4741 ccatttccat acctccttac gtaatcttta gttaataata gcatattcgt cccttgaact
     4801 gtcaaaataa tccaccacct actatctaac acatgctttt cactgctttt tatgttaaat
     4861 taaaatagta cataattata tgtaatgaaa ggtggtcata cttaatggac gattgcattt
     4921 tctgcaaaat agttcgtggc gaaattcctt ctgccaaagt gtatgaagat gatgaagtat
     4981 atgctttcct cgatttaggc caagttacag aaggtcatac actcgtaatt cccaaaaaac
     5041 atgctaggaa cacattcgat ttacccgatg aaacggccgc tgaattattc cgccgcgtac
     5101 caaaaatcgc gcgggcatta aaagaagctt taccgattca aggattaaat attttaaata
     5161 ataatgaaga agttgctttc caatctgttt ttcattgtca tatccattta ataccaaggt
     5221 atagcaaatc agacgacttt gggttaaaat ggaaagataa cgcagactgg tatacacaag
     5281 aacgttacca agaaattgct gaacttattg cagcaaaagt agactaaaat gactttatgg
     5341 atggagtgga gtataaatga ataaaaaatc acttattttc ggtattttag ctggtggggc
     5401 aattggagcc gcagcctcgg tattatttgc tccaaaatcc ggcaatgagc ttcgaaaaga
     5461 tattgtcgct aaatcaggtg aagcaagtgt tattttgaaa gaactcgcat ataatgcaaa
     5521 tgaacttatc caatccgttc aagttctcgg cacagaaggt tccactttat taaaagatgt
     5581 ttcttctgac atcatggaat ctgtttccaa atggaatgaa gaaatggaac ctgagaagaa
     5641 acgcctaaaa gacgagatta aagatatgca aaaaacaatt tccgacttag aaaaaacgct
     5701 aaaaaaagat aataaataag tagagaaact gggcgactgc tcagtttttt tatttgtcta
     5761 aagtcccttt caaaaaaacg tcataattag acaataaatt ctctaaaaaa agcttgaatt
     5821 ttgtagcatt tgagcataca atactatggt gccttctgat ggaagagcac tattttagct
     5881 ataactggag gaaagcttac aatgcgctgc ctaaaatcaa tcaacacaga gcgacgagac
     5941 gaatttaatc gacttttcct aaaaggaatt cttgtctggc tagctgccgt atgtatttgt
     6001 tttttaacac aacatt
//
LOCUS       DABQVC010000173         5972 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.173,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000173 DABQVC010000000
VERSION     DABQVC010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5972
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.173"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            17..1822
                     /locus_tag="IBJ56_002349"
     CDS             17..1822
                     /locus_tag="IBJ56_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HAM3418596.1"
                     /translation="MNLIKNRKLKTKLSINIVITTIMLIGLGATSFLGFRHVATLSDN
                     MVDNNVAPMKEIAKIQTNMAQINIDILTMFDTINGKSALIKDIDDLYAENDQAIHNFK
                     KANLTAEDKKQLAYFEEKLADMKSSASSVISDTSSALDDAELLGAQNRYYQNVKTKFD
                     DATKQLNVLNEMNYKEVENSSQAISDFGVKISIIFTAVIIAVLISLFIFNAYITRVIL
                     KGIRHLQTAVHKVASGDLSYRSTYNGRDELGDITNDLNEMSENLRLMIEDVKKASTDV
                     KSSSDNVIISSEIISAMTTEMDIEMKMMGEQIQTQIGSMKESTDAMDQMTGGVQNVAE
                     YALKVSDLTKDSAEKTNDGIAVINNLVSQMDRISGVMRSSTDVVSQLVNRVGEVEKAL
                     DTVTNIADQTNLLALNAAIESARAGEHGRGFAVVAEEVRKLAEQSRLAVVDINTVLKK
                     IQTESKTTIEVMNTGLSESEAGQKIISETEATFTDLLNRVNDISAQMQNVSQETEEMA
                     AGIEEVNTSISDVTEISNQIGEKSTAALEFAEVNKMKVDELVVISEEMQKISGSLEGY
                     IANFNTEVSEEAVEVTEEPESETKDPGEPVLAENV"
     gene            1835..2563
                     /locus_tag="IBJ56_002350"
     CDS             1835..2563
                     /locus_tag="IBJ56_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418597.1"
                     /translation="MRIWIKSLLVITACIFSLTLLNTKYTFYSPTVKLESAKVVYKLD
                     NEPFNVRLDVPLVNQMDAPTLFNGCEVTSLAMLLQFNGKRVTKNELANNLPTTPIEQN
                     GLHGNPDKAFVGSISGDSPGLGVNHAPIANLAAKYVNEAHVHDISGNSIQDIITVLST
                     GAPVWIITTTDYHAPKNWQTVQTKEGKKKITYSMHSVVITGFDKNNFYINDPYGHKNR
                     AVKRSVLEEGWSAMGKQAIYLSHP"
     gene            complement(2606..2818)
                     /locus_tag="IBJ56_002351"
     CDS             complement(2606..2818)
                     /locus_tag="IBJ56_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418598.1"
                     /translation="MVFAKKLVASIAVFISLGFIYFRESTAVAFESTNTASFLPSTGD
                     AFSVWPIVIGVVLVALAVVLFIKKKI"
     gene            3266..5071
                     /gene="glmS"
                     /locus_tag="IBJ56_002352"
     CDS             3266..5071
                     /gene="glmS"
                     /locus_tag="IBJ56_002352"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HAM3418599.1"
                     /translation="MCGIVGYIGTNNAKGILLEGLEKLEYRGYDSAGIALQNKDLVTV
                     VKEKGRIADLASLVPSDAFGTTGIGHTRWATHGKPNHENAHPHQSKSGRFTMVHNGVI
                     ENYTLLKEEYLKNHSFVSDTDTEVIVQLIELFAAELSTKEAFKKALSLLHGSYAICLI
                     DQTDTETLYAAKNKSPLLIGKGENFNVIASDAMAVLKETDEFVEIMDKEIVIVTKDGF
                     TLETLEGEEISRASYTAELDASDIEKGTYPHYMLKEIDEQPAVTRKIIQAYQNEAGEI
                     NVDQTILDEILSSDRIHIVACGTSYHAGLVGKNLIEKMAKIPVEVHVSSEFGYNLPLM
                     SKKPLFIFITQSGETADSRQCLVKVKELGYRTLTLTNVPGSTLDREADHSMYLYAGPE
                     IAVASTKAYTAQISVLAVLAVSLGREIGDAEALSINLAAELGIVATAMEAMVSSKEVI
                     EHIAGEYLATSRNAFFLGRNIDYFVAMEAALKLKEISYIQAEGFASGELKHGTIALIE
                     DGTPVLALITQESINWNIRGNVNEVLARGAKTCVFAMENVAQPGDRFVIPQVHPLLTP
                     LASVIPCQLLAYYAALHRDCDVDKPRNLAKSVTVE"
     gene            5184..5924
                     /locus_tag="IBJ56_002353"
     CDS             5184..5924
                     /locus_tag="IBJ56_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418600.1"
                     /translation="MEVSNVTLEPNKDSRPAVLTIGKFDGVHIGHQTILNTALSIKKE
                     NEILTAISFSPHPLWALKQIEIYREMLTPRMEKERWLAHYGVDHLIETAFTPRYAETT
                     PEEFVRDHLTNLNLSHIVVGSEFNFGKGRDSDVDLLRDLCKPYDIGVTSVPVIETNQT
                     KISSTNIRAFIRRGHFQEAEELLGHPWYITGIVENGEMTGLDDYVLPATGTYQTDSGI
                     VNVTNNRTIEVGLSDGLQQLHMKNELSE"
BASE COUNT         2085 a         1141 c         1187 g         1559 t
ORIGIN      
        1 taggagtgtg gaatgggtga atttaattaa aaatcgtaaa ttgaaaacaa aattaagcat
       61 caatattgtt ataacgacca tcatgttaat cggacttggc gcgactagct ttcttggctt
      121 tcgtcatgta gcaacacttt cagataatat ggttgataat aatgtcgcac cgatgaaaga
      181 aatcgcaaaa atccaaacaa acatggcaca aatcaatatc gacatcctga ccatgttcga
      241 cactattaac ggaaaatcag ctcttataaa agatattgat gatctttatg ccgaaaatga
      301 ccaagcaatt cataatttca aaaaagccaa tttaacagca gaagataaaa aacaattagc
      361 gtactttgaa gaaaaactag cggacatgaa atcatccgca tcgtcagtaa tcagtgacac
      421 atcaagcgca ctagacgacg cagaactact tggagcgcaa aacagatact accaaaacgt
      481 caaaacaaaa tttgacgatg caactaaaca attaaacgtt ttaaatgaaa tgaactacaa
      541 agaagtcgaa aattcttctc aagcaatttc tgactttggt gtaaaaatca gtatcatttt
      601 cacagcagtt attattgccg tgctaatttc tctattcatt tttaatgctt atattacaag
      661 agtgattcta aaaggaatcc gtcacttgca aacagctgta cataaagtag ctagtggaga
      721 tttgtcgtac cgcagcactt ataacggtag agacgagctt ggtgatatta caaacgactt
      781 gaatgaaatg agcgaaaacc taagattaat gattgaagac gttaaaaaag cttctacaga
      841 cgttaaatct tccagtgata acgttattat tagttcggaa attatttctg caatgacgac
      901 agaaatggac atcgaaatga aaatgatggg tgagcaaatc caaacacaaa tcggcagcat
      961 gaaagaaagc acggatgcaa tggatcaaat gactggcggc gttcaaaatg tggctgaata
     1021 cgcgcttaaa gtatctgacc taacaaaaga ttccgcagaa aaaacgaacg atggcattgc
     1081 cgttatcaat aatctcgtgt cccaaatgga ccgtatcagt ggcgttatgc gttcaagtac
     1141 agacgttgtt tctcaattag ttaaccgcgt tggtgaagtg gaaaaagcgc tggataccgt
     1201 tacaaatatc gctgaccaaa ccaacttgct tgccctaaat gcggcaatcg aatctgctcg
     1261 tgctggtgaa catggccgtg gatttgcagt cgtagccgaa gaagtccgca aactagctga
     1321 acaatcacga cttgctgttg ttgacattaa tactgttctg aaaaaaattc aaacagaatc
     1381 aaaaactact atcgaagtaa tgaacacagg tctttccgaa tcagaagctg gccaaaaaat
     1441 catttctgaa acggaagcaa ctttcacaga cttactcaat cgtgtcaatg atatttccgc
     1501 tcaaatgcaa aatgtatctc aagaaaccga agaaatggct gcgggaattg aagaagtcaa
     1561 cacgtcaatt agcgacgtaa cagaaatttc caatcaaatc ggtgaaaaat ccactgctgc
     1621 acttgaattc gcagaagtaa acaaaatgaa agtggacgag ctagttgtta tctccgaaga
     1681 aatgcaaaaa atttccggtt cattagaagg gtatatcgcc aacttcaata ccgaagtgag
     1741 cgaagaagcg gtcgaagtaa cagaagagcc agaatcagaa acaaaagatc caggagagcc
     1801 agtcctagca gaaaatgtct aggaagcatg tataatgcga atttggataa aatcactgct
     1861 tgtcattaca gcgtgtatat ttagtttgac ccttctaaat acgaaatata ccttttattc
     1921 accaaccgtc aaactcgaaa gcgccaaagt cgtttataaa ttagacaacg aaccttttaa
     1981 tgtaagatta gatgtgccac tagtgaatca aatggatgct cctacgcttt ttaatggctg
     2041 cgaagtaacg agtttagcaa tgctcttaca attcaatgga aagcgtgtaa cgaaaaatga
     2101 gttagcgaat aatctcccaa caacaccaat cgaacaaaat ggtttacacg gtaatccgga
     2161 taaagcattt gttgggagca ttagcggcga tagccctggt ctaggcgtga atcatgctcc
     2221 catagctaat ctggctgcta aatacgttaa tgaagcacac gtccacgata ttagcgggaa
     2281 tagcattcaa gacatcatta ctgtactcag cacaggcgca ccagtatgga ttatcactac
     2341 caccgactac catgcaccca aaaactggca aaccgtccaa acaaaagaag gtaaaaagaa
     2401 aatcacgtat tcgatgcaca gtgtggtaat tactgggttc gataaaaaca atttttatat
     2461 taatgatcca tatggacata aaaaccgtgc cgtaaaaaga agtgtacttg aagaaggctg
     2521 gtctgctatg ggcaagcaag ccatttacct aagtcaccca taaaaaaatc gtttgaaagc
     2581 atatctcatg ctctcaaacg attttttata ttttcttctt aataaatagg acgacagcaa
     2641 gcgcgacaag caccactcca ataacaatcg gccaaaccga aaacgcatct ccggtagaag
     2701 gaagaaagga agcagtattt gtactttcaa atgcgacagc tgtactttct cggaaataaa
     2761 tgaatccaag tgaaatgaaa acagcaatac tagcaactaa tttttttgca aaaaccattc
     2821 agctcgctcc tttttgtatc ataactatat tattagtcat ttgttatttt ttgtcaatgt
     2881 atagaccaat tttaaacaaa cggctatata taatgcttga cctagtatac atattattgt
     2941 aaaatgaatt tgtttccttg aaaagtagtg aaggaggatt gtacaattaa atagaagcgc
     3001 cagaactgat tgggacgaaa atacttgaag gtgaaatccc tgaaaagtaa acagtcagtt
     3061 gacgaggagg agattaatcg aagtttcggc gggagtctcc cggctgtgca tgcagtcgtt
     3121 aagtcttact tacaaatcac ttgggtgacc aagtggacag agtagtaatg aaacatgttt
     3181 tttaccctcc aaggaaacca aaaaatgtag agggcttgaa attggataag tctgccctca
     3241 agttaattat tggaggagtt ttactatgtg tggaatcgtt ggatatattg gaacaaataa
     3301 tgcaaaaggc attttattag aaggacttga aaaattagaa taccgcggct atgactctgc
     3361 gggaatcgct ttgcaaaaca aagacctagt aacagtagtt aaagaaaaag gacggattgc
     3421 agaccttgcg agccttgtac caagtgatgc attcggtaca acaggaatcg gacatacacg
     3481 ctgggcaacg cacggtaaac caaatcacga aaacgcccac ccgcaccaaa gcaaatctgg
     3541 tcgttttaca atggttcata acggcgtaat cgaaaactat acccttttaa aagaagaata
     3601 cttaaaaaat cattcatttg ttagtgatac ggatacagaa gtaatcgttc agcttattga
     3661 actctttgca gcagaacttt cgactaaaga agcattcaaa aaagcgttat cgttacttca
     3721 tggttcttac gcgatctgct taattgacca aaccgataca gaaacactat acgcagcaaa
     3781 aaacaaaagc ccattactaa tcggaaaagg cgaaaacttc aacgttattg caagtgatgc
     3841 aatggctgtt cttaaagaaa cagatgaatt cgtggaaatt atggataaag aaatcgttat
     3901 cgttacaaaa gacggtttta cattagaaac attagaaggg gaagaaatta gccgcgcgag
     3961 ctacactgct gaattagatg catctgacat cgaaaaaggc acatacccgc actatatgtt
     4021 aaaagaaatc gacgaacaac cagcagtaac acgtaaaatc atccaagctt accaaaacga
     4081 agctggggaa atcaatgtcg atcaaacaat ccttgatgaa attttatctt ctgaccgtat
     4141 tcatattgtc gcttgtggta cgagctatca tgctggttta gtcggaaaaa atttaatcga
     4201 aaaaatggcg aaaattcctg tagaagtaca tgtttctagt gaatttggtt ataatttacc
     4261 gctaatgtct aaaaagccgt tattcatttt cattacccaa agtggggaaa cagctgatag
     4321 ccgccaatgc cttgtaaaag tgaaagaact tggttaccgg acgctgacat taacgaacgt
     4381 accaggctct acgcttgacc gtgaagcgga tcattcgatg tatctctatg ctggacctga
     4441 aattgcggtt gcatcaacaa aagcatatac cgcacagatt tcggttttag cagtacttgc
     4501 agtttcactt ggtcgcgaaa ttggtgatgc tgaagcgctt agcattaatt tagctgctga
     4561 attaggtatc gttgcaactg caatggaagc aatggtttct agtaaagaag ttatcgaaca
     4621 tattgcgggc gaatacttag cgacttctcg taacgccttc ttcttaggta gaaacatcga
     4681 ttatttcgta gcgatggaag cagcacttaa actaaaagaa atttcatata ttcaagcaga
     4741 aggttttgca agtggggaat taaaacatgg tactattgcg cttattgaag acggcacacc
     4801 agttttagcg cttatcacgc aagaatctat caactggaat attcgcggaa atgtaaatga
     4861 agtcttagcg cgtggagcaa aaacttgtgt atttgcaatg gaaaacgttg cgcaaccagg
     4921 tgaccgcttt gttattccgc aagtgcatcc attattaaca ccactagcga gcgtgatccc
     4981 gtgtcaatta ttagcttatt acgcagcact tcaccgtgac tgtgatgtcg ataaaccaag
     5041 aaacttagca aaaagtgtca cagtagaata aagtattcaa gaccttttcg aaattagaaa
     5101 aggtcttttt ttatgtaatc aataaatttg cacgacgccc ttgttatact ataaacttag
     5161 agaggaatgg gggaaatcag ccaatggaag tatcaaacgt aacactcgaa ccaaataaag
     5221 atagccgccc cgcagtttta acaatcggca aattcgacgg ggtacatatc ggccatcaga
     5281 ccattttaaa tacagcctta tccataaaaa aagaaaatga aatattaacc gctattagtt
     5341 tcagtccaca tccgctttgg gctttaaaac aaatcgaaat ataccgcgaa atgctcacac
     5401 caagaatgga aaaagaacgt tggctcgcgc attacggtgt cgatcattta atcgaaacag
     5461 cattcacacc tcggtatgcg gaaacgacac cagaagagtt tgtcagagac catttaacca
     5521 atttgaattt atcgcatatc gtcgttggtt ctgaatttaa ttttgggaaa gggcgcgatt
     5581 ctgacgtaga tttactccgg gacctatgca agccctatga tattggtgtc acatctgtcc
     5641 cggttattga aacaaatcaa accaaaataa gttccaccaa cattcgagcg tttattcggc
     5701 gcggtcattt tcaagaagcg gaagagctct taggccatcc gtggtatatt actggaattg
     5761 tagaaaatgg tgagatgact ggcttagatg attacgttct cccggcaaca ggtacgtatc
     5821 aaacagactc aggaatagtg aatgtaacga acaatcgtac catcgaagtc ggattgtcag
     5881 atggacttca acaattacat atgaaaaacg aactttccga gtaattagga aagtttttct
     5941 ttacatttta taaaattagt aatatactaa tt
//
LOCUS       DABQVC010000174         5951 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.174,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000174 DABQVC010000000
VERSION     DABQVC010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5951
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.174"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1220
                     /locus_tag="IBJ56_002354"
     CDS             <1..1220
                     /locus_tag="IBJ56_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAM3418601.1"
                     /translation="AILFFVMRALGELLIHNPTTGSFTEFAEQFIGPWAGFITGWTYW
                     FCWIVTGIAEITAVGMYVKFWVPDLPQWIPALACVLILLLFNLATVKAFGEIEFWFAI
                     IKVVVIIALIVIGFVLVFIGYKHGTSTASFSNLVDYGGFFPNGIAGFLLAFQMATFSF
                     VGIELVGVTAGEADDPERTLPKAINNIPIRILIFYIGALLVLMSIYPWSNIDPNTSPF
                     VSVFTMIGIPAAAGIINFVVLTAAMSSCNSGIFSTSRMLYTLSAEGKAPKKMHHLSSN
                     GVPATALITSTACLLIGVFLNYFLPEQVFILVTSIATICFIWVWGVILVAHLRFRHKH
                     PEIAEKSKFKMPLSPLMNWVSLIFFGGLLVILGFAADTRIALFVTPVWFLILGIAYQV
                     LKASNRKTKIRHN"
     gene            1485..5915
                     /locus_tag="IBJ56_002355"
     CDS             1485..5915
                     /locus_tag="IBJ56_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase"
                     /protein_id="HAM3418602.1"
                     /translation="MIHAGLDVGSTTAKAVALNDQGDILFQTYRRHYSDIKKVTLEIM
                     QDMQKKCGMTEMTFKITGSSGLAISKFLNVPFVQEVIACTEAVEQVIPETDVVIELGG
                     EDAKIIYFSGGIEQRMNNACAGGTGAFIDQIATLLQTDPTGLNELAQNANTIYPIASR
                     CGVFAKTDVQPLLNEGARKEDIAASIFQSVVTQTISGLACGRPIRGKVAFLGGPLTFL
                     DQLRYRFTETLKMKDSDIIAPQNAEYFIALGTAFTGLNDVPLKVDDMIYRLSNMDMTT
                     MATDTVILPALFEKQEDLEAFRARHNQMKAKRAKLEDYEGDAYLGIDAGSTTTKLILM
                     SQTNEILYSFYSSNNGNPLQSVIDATSYLYEILPEKVRVAQSGITGYGESLIKAALKI
                     DVGEIETVAHYRAAREFLPDVDFILDIGGQDMKCMKIKKGALDSLMLNEACSAGCGSF
                     LETFAQTLNLSIEEFAARALEAKAPVDLGSRCTVFMNSKVKQVQKEGVSMEDLSAGLA
                     YSVVKNALQKVIKLRSPKDIGEKVIVQGGTFYNESVLRAFELLTGREVVRPDIAGMMG
                     AYGAALIAREHYETGEVTEMLVLEKLREFSAETSQSRCNLCSNTCQLTVTRFGDDRMF
                     VSGNRCERGERVETKRNLLPNLYAYKLKRTFDYKSLKKSEATRGTIGIPRALNVFENY
                     PLWHTILTNLGFRVVLSSKSSKNLYDKGIETIASEAVCFPAKLTHGHIMDLIKKKADR
                     IFYPSVVYEKPEFGEATNNFNCPVVAGYPEVIRVNVDALEEKNIPMISPFLTLDNEKA
                     LIEQMSLAFPEVPAADMEKAVQAGLEEAELCRKDIQAEGEAALTYIKKNKIKGIVLAG
                     HPYHIDPEVNHGIPELITMNGMAVLTEDSISHLGEMDHKLRVENQWKYHARLYRAASF
                     TAKSEDLEFVQLTSFGCGLDAITTDMCQEIIEGHNKVYTLLKIDEINNLGAARIRVRS
                     LKAAMEEREKNNVKPGIMPKPKERPLFTKEMKKTYTILAPQLAPTHFEMLEAACKVGG
                     YNLEVLPAVTPRAVDEGLRYVNNDACYPAILTIGQMMDALKHGDYDVNNLAVLMTQTG
                     GGCRATNYISMLKKALGEAGLDHIPVISLNANGLEKQPGFKMTPKVLVRFLAGISLGD
                     ALDRMLYRTRPYEVEPGSANKIFRHYLDAGRALMENYSFGAYKKLANEMVRAFDNLPI
                     TNEVKPRVGVVGEILVKFHPGANNNIVDVIEDEGGEAVVPDLTDFILYCCYDDHFAAN
                     TFGRSKVKSFAKQSVAIPLINQFRKPVTDALKKSERFEAPASIESIAEKASQLLSLGN
                     KMGEGWFLTGEMFELLDSNVPNIACLQPFACLPNHITGRGMIKGLKKMYPEANIMSID
                     YDAGSSSVNQLNRIKLMLSIARKQLETTEVITEKETNTRFNPREKILGKAKQVRESAP
                     VEMIGNKVKQARDADPVGAIAQKVKHVASSSSEHVQTDND"
BASE COUNT         1872 a         1076 c         1312 g         1691 t
ORIGIN      
        1 gggctatttt attctttgtt atgagagctt tgggtgaatt attaatacat aacccaacaa
       61 caggatcttt tacagaattc gcagagcaat ttattggacc atgggctggc tttattactg
      121 gttggacata ttggttctgc tggattgtga caggtattgc agaaattaca gcagttggca
      181 tgtacgtaaa attttgggtg ccagacttac cgcaatggat cccagcactt gcatgtgttt
      241 tgatacttct attgtttaac ttagcaactg ttaaagcttt tggtgaaatc gaattttggt
      301 ttgcgattat taaagtggtt gttattattg ccttaattgt tattggattt gtactcgtat
      361 ttattggtta caaacatggc acaagtacag cttcattttc taatttagta gattatggtg
      421 gctttttccc gaatggaatt gccgggttct tgctagcatt ccaaatggcg acattttctt
      481 ttgttggaat tgagcttgtt ggggttactg caggagaagc ggatgatcca gagcgtacac
      541 ttccaaaagc cattaataat attccgattc ggattttaat cttttatatt ggtgcgctac
      601 tcgtattaat gtcgatttat ccgtggagca atattgatcc aaacacaagc ccattcgtaa
      661 gcgtctttac gatgattggg attcctgcag ctgccggtat tattaacttt gtggtgttaa
      721 cggctgctat gtcttcttgt aatagtggga ttttcagtac aagccggatg ctttatactc
      781 tttctgcaga aggaaaagca ccgaaaaaaa tgcatcattt gagctctaat ggtgttccag
      841 caacagcgtt aatcacatct acagcatgtt tacttattgg tgtgttttta aattatttct
      901 taccagaaca agtatttatt ttagtaacaa gtatcgcgac gatttgcttt atctgggttt
      961 ggggcgttat tttagtggcg catttacgtt ttcgtcataa acatccagaa atcgcagaaa
     1021 aaagtaaatt caaaatgcca ttatctcctt taatgaactg ggttagctta attttcttcg
     1081 gaggattact agttatcctc ggttttgcag cagatacaag aatcgcactt ttcgtcacac
     1141 cagtatggtt cttgatttta ggtatcgctt atcaagtttt aaaagcttcc aaccgaaaga
     1201 caaaaattcg ccataattaa taactgagca agcattcgct aaacggagct attttaggga
     1261 atgcttgctt tttttcggca tgaaaatgct ccgcgaaatt ctttacaaat gaaaaaaatc
     1321 gtgtagaatg agaggtgttt agagcatttt gtcgcattct cgcatatcga gtgagtactc
     1381 actcattttt agaaataact atttatgtga agcaacgtac aaatgacaga ttatatgtga
     1441 agttacatac atattaagta gtgcgtaatg aaagggatga gaaaatgatt catgcagggt
     1501 tagatgtggg atcaacaaca gcaaaggccg tagcacttaa tgaccagggg gatattttat
     1561 ttcaaaccta cagaagacat tattcagaca ttaaaaaagt tacattagaa atcatgcagg
     1621 atatgcaaaa aaaatgtggc atgacagaaa tgacattcaa aattacggga tcatccggat
     1681 tagcgatttc taaattcttg aatgtacctt ttgtgcagga agtaattgct tgtacggaag
     1741 cagtggagca agtaattcca gagacagacg tagtaatcga gctgggcggg gaagatgcga
     1801 agattattta tttcagtggt gggattgagc aacgaatgaa taatgcctgc gcgggtggaa
     1861 ctggtgcttt tattgaccaa atcgcgacac tgcttcaaac agatccaaca ggtttaaacg
     1921 aactggcaca aaatgcgaat acgatttatc cgattgcttc cagatgtggc gtgttcgcca
     1981 aaacagatgt gcaaccacta cttaatgaag gggctagaaa agaagatatt gccgcttcaa
     2041 ttttccaaag tgtggtgaca caaacgatta gtgggcttgc ttgtggacgt ccaatccgcg
     2101 gaaaagtagc gtttcttgga ggaccactta ctttccttga tcaattgcgc tatcgtttta
     2161 cagaaacatt gaagatgaaa gatagtgata ttattgcgcc tcaaaacgcg gaatatttta
     2221 ttgcacttgg aacagctttt actggattaa atgatgtacc tttaaaagta gatgatatga
     2281 tttaccgcct ttccaatatg gatatgacca cgatggcgac ggatacggtc attttaccag
     2341 cactttttga aaagcaagaa gacttagaag cttttcgtgc gcgtcataat caaatgaaag
     2401 ccaaacgagc aaaactggaa gattatgaag gggatgctta tttaggcatt gatgcaggat
     2461 caactacgac caaattaatc ttaatgagcc aaaccaatga aattctttac tcgttttatt
     2521 ctagtaataa tgggaatccg cttcaatcag ttattgacgc aacgagttat ttatatgaaa
     2581 ttttaccgga aaaagttcga gttgcgcagt ctggaattac aggctacggc gagtcgctta
     2641 ttaaagccgc actaaaaatt gatgttggcg aaattgaaac agtggcgcat tatcgtgctg
     2701 ctcgtgaatt tttaccggat gttgatttta ttttagacat tggtggacaa gatatgaaat
     2761 gtatgaaaat taaaaaaggc gcactggata gcttgatgct taatgaagct tgctcggccg
     2821 ggtgtggttc gtttcttgaa acatttgcgc aaacacttaa tttatccatt gaagagtttg
     2881 cggctcgggc gctggaagca aaagcacctg tagacctagg ttcacgttgt accgttttca
     2941 tgaattccaa agtgaaacaa gtgcaaaaag aaggtgtgag catggaagat ttatctgcgg
     3001 gtcttgctta ttcagtcgta aaaaacgcgt tacaaaaagt aatcaaactc cgcagtccga
     3061 aagacattgg tgaaaaagta atcgttcaag gtggaacttt ttacaacgaa tcagtcttgc
     3121 gtgcctttga actgttaact ggacgtgaag tagttcgacc ggatatcgcc ggaatgatgg
     3181 gagcatacgg ggccgcttta attgcccgcg aacattacga aactggcgaa gtaacggaga
     3241 tgctcgtatt agaaaaatta cgtgaattta gcgcggaaac ttcgcagtcg cgctgtaacc
     3301 tttgtagtaa cacatgtcag cttacagtga caagatttgg cgatgaccgg atgtttgtta
     3361 gtggaaatcg ttgtgaacgc ggggaacgtg tcgaaacgaa gcgtaattta ctgcccaatt
     3421 tatatgcgta taaactaaaa cgtacctttg attacaaatc gctgaaaaaa tcagaagcaa
     3481 ctagagggac cattggtatt ccacgcgcat tgaacgtttt tgaaaattat ccactatggc
     3541 atacgatttt aacgaactta ggtttccgag tggttttatc atcgaaatca tccaaaaacc
     3601 tatacgacaa aggtatcgaa acgattgcct ccgaagcagt ttgtttccca gccaaattaa
     3661 cacacggtca tattatggat ttaatcaaga aaaaagcaga tcgcattttc tacccatctg
     3721 tcgtttacga aaaaccggaa ttcggtgaag caacgaataa ctttaactgt cctgttgtgg
     3781 ctggttaccc agaagttatt cgtgtcaatg tggatgcttt ggaagagaaa aatattccaa
     3841 tgatcagtcc gtttttaact ttagataatg aaaaagcatt aatcgaacaa atgagtctcg
     3901 ctttcccgga agtcccagcc gcggatatgg aaaaagcagt ccaagcaggg ctagaggaag
     3961 cagaactttg ccgcaaagac attcaagcag aaggagaagc ggcacttact tacattaaga
     4021 aaaacaaaat caaagggatt gttcttgcag ggcatccata ccatattgat ccagaagtga
     4081 atcacggaat tccggaactc attacgatga acggcatggc ggttcttacg gaagattcga
     4141 tttctcatct tggagaaatg gaccataaac ttcgggttga gaatcagtgg aaatatcacg
     4201 caagactgta tcgtgcagcc agttttactg ctaaaagtga agatttagaa tttgtgcaat
     4261 tgacgtcatt tggttgtggg cttgatgcaa ttacgacgga tatgtgccaa gaaatcattg
     4321 aaggtcataa taaagtatat acactactta aaatcgatga aatcaataac cttggtgccg
     4381 cacgtatccg cgttcgttcg ttaaaagcag caatggaaga acgtgagaaa aacaacgtga
     4441 aaccagggat tatgccgaaa ccaaaagaac gtccattatt tacaaaggaa atgaagaaaa
     4501 cgtatactat tttagcgcca cagctagctc cgacccattt tgaaatgtta gaagcagctt
     4561 gtaaagtggg cggttataac ttggaagtat taccagcagt tacaccacgc gcagtggatg
     4621 agggcttacg ttacgtcaat aacgacgctt gttatccagc aattttaacg attggacaaa
     4681 tgatggatgc gctgaaacac ggcgattatg atgtaaataa tttagcggta ttgatgacgc
     4741 aaacaggtgg tggatgtcgg gctaccaact atatttcgat gctgaaaaaa gctctcggag
     4801 aagctggcct agatcatatc ccagttattt ctcttaacgc caacggttta gaaaaacaac
     4861 caggctttaa aatgacgcca aaagttcttg ttcgtttcct agccggaatt agcttaggtg
     4921 acgcgctcga ccggatgctt tatcgtacta gaccatatga agtggaacca gggagcgcga
     4981 ataaaatatt ccgtcattat ctcgatgctg gtcgtgcgtt aatggaaaat tactcttttg
     5041 gagcatataa aaaattagca aatgaaatgg ttcgcgcctt tgacaactta ccaataacaa
     5101 atgaagtgaa gcctagagtt ggtgtcgttg gagaaattct cgtgaaattc catccgggtg
     5161 ctaataacaa tattgttgat gttattgaag acgagggcgg agaagcggtt gttcccgatt
     5221 taacagattt cattttatat tgttgttatg acgatcactt tgcagccaat acatttggtc
     5281 gttccaaagt aaaatcattc gcgaaacaaa gcgttgcgat tccacttatt aatcaattcc
     5341 gcaaaccagt aactgatgcg ctgaagaaaa gtgaacgctt tgaagcaccg gcgagtatcg
     5401 aatctatcgc tgaaaaagcg agtcaattac tatcactcgg aaataaaatg ggtgagggct
     5461 ggttcttaac aggggaaatg tttgaattac tcgatagtaa tgtaccaaat atcgcttgct
     5521 tacaaccatt cgcttgcttg ccaaaccata ttactggtcg aggcatgatt aaagggctta
     5581 aaaaaatgta tccagaagct aacatcatgt ccattgacta cgatgccggc tcaagctctg
     5641 tgaaccaact aaatcgaatc aaattaatgc tctccatcgc aagaaaacaa ctagaaacga
     5701 cagaagtaat caccgagaaa gaaacaaaca cacgattcaa cccaagagaa aaaatccttg
     5761 gtaaagcaaa acaagtacga gaaagcgccc cagtcgaaat gattggaaac aaagtaaaac
     5821 aagcgcggga tgcagaccca gttggcgcga tagctcagaa agtgaaacat gttgcatcat
     5881 caagtagcga gcacgtccaa acggataatg attaatgtaa agccacctat aaaataggtg
     5941 gcttttttag a
//
LOCUS       DABQVC010000175         5860 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.175,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000175 DABQVC010000000
VERSION     DABQVC010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5860
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.175"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1197
                     /locus_tag="IBJ56_002356"
     CDS             <1..1197
                     /locus_tag="IBJ56_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HAM3418603.1"
                     /translation="LDSPFIGLSTLPQPLFSAIQESTFQSLERITTVAIKEAVDFVLI
                     AGDIYDSEDQSVRAQARFSKEMKRLEVANIPVFMIHGNHDFIEKHKEKLTLPSNVHVF
                     SEQVEVMSHKTATGVSVNIYGFSYNERHIRSSRVDKYKIQGNADFHIALLHGSEVSSS
                     EEHDVYAPFRVQEISKKGFDYWALGHIHKRQLLAESPSIYYPGNIQGRNRKESGEKGA
                     SIITLSEASTTIDFIGTSPIIWEEAVITLPENSEINAFYRETTKLLESYQGRSHSYFL
                     HIIVKMENKQKIDTNDWLQMLQEEVEITDNTFVWVHKLTTEITNQSNSQTWYESHLAG
                     EEIKHSFETLQDESAFYQAVEALYLESGVSRYLDDLSEIDRERLLHDALMELGRTLAE
                     VEGDDK"
     gene            1194..3917
                     /locus_tag="IBJ56_002357"
     CDS             1194..3917
                     /locus_tag="IBJ56_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAM3418604.1"
                     /translation="MRITSIDIIGYGKWSDAHFNNIANFQVFYGENEAGKSTIMAFIH
                     SILFGFPTKQQSIPRMEPKNGGPYGGRLTLEDTPLGKVIIERLKGKATGDVRIYYGDG
                     QTAGEEKLPEIIGEIDRNTYEAIFSFDIHGLQNIHQWKKKEFERYLLATGTTGSDALL
                     KAAEALQKKLDSLYKPSGRNPLINQQLKKVKEAQQAFQNAKKQNAQYEQLINEKEQAI
                     VRQTELQKEKTTMRVELDALATLADLWPLYQEWKALSNKASETTEATFPPDGVIRLEH
                     LNLREKEWQNQLIQLEERQKNLISNNNYEHSAFFAENEAEVTYLIETYAAFGEREIQL
                     KNLKQEIKFQQVDTKQPLRIWSSELEQTMIHLKEKEQSHKEQQHDIQLKLKFTNNSEE
                     KLQKKIDQIEAEMWDNKTFQQAKEKMQDSPKTSKTKTMVSLGIFAVAFVLMIVFQAIW
                     SVALVFVSALIVGYAFITTGKSSPTNNEQILAFLEQKKIRQEWQQLLNEMDMVASQIA
                     ELRAAENKLSENIYQHTMELRHFFSDLGINTEPSSNWHYELSIYKKNSEKRQLAMELI
                     SKLEPLAEKQEAYRARLENLKLPIDYTDTEEKITFLRQGLLYYRNHLTENAKLAEKLE
                     QVTMQLDLVKQDLLLVKKEKADLLERANVSNEEDFRMAAMRVKEEQKWRERLVLIEAQ
                     LEPEKREALNRYENQATIKEKELQLEESLRQIELEQEQLHASLAAQNHAIDKLEEGGT
                     FAVLMQEFYSEKSKLQQISAEWTETKLALQMLQNTMQQLQEGKLPKTLKLASEYFNHL
                     TSGNYRKVYLQDNRLQVESKDRIPFFPEELSQATKEQLYLAIRFALIDVIHKDFPLPI
                     IIDDGFVHFDSSRMGQMMQLLQKRKSENQVIFFTCHQETRKYFSSEDIRVL"
     gene            3962..4903
                     /gene="yhaM"
                     /locus_tag="IBJ56_002358"
     CDS             3962..4903
                     /gene="yhaM"
                     /locus_tag="IBJ56_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM"
                     /protein_id="HAM3418605.1"
                     /translation="MEKRLLDFEVGETVDLFLLIKSSVKGTASNGKPFLSLVLQDKSG
                     ELEAKLWDVKESDEANYGVQQIVHLMGDIQNYRGRKQLKIRQIRQATALDGVSASEFM
                     ETAPINKEEMADEITQYIFEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGL
                     SFHVVSMLRLAKSVADLYPSVNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGH
                     ISIVVEEVSKIADELSIDGEEVVVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLM
                     DASLNMMDKVLKHTKPGEFSERVFGLDNRSFYNPIFE"
     gene            complement(4944..5825)
                     /locus_tag="IBJ56_002359"
     CDS             complement(4944..5825)
                     /locus_tag="IBJ56_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="foldase"
                     /protein_id="HAM3418606.1"
                     /translation="MKKKLILGLVMMMALFSLAACGGGGDVVKTDSGDVTQDELYDAM
                     KDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSF
                     KSQLKYNLLVQKATEANTDTSDKTLKKYYETWQPDITVSHILVADENKAKEVEQKLKD
                     GAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG
                     YHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKDANVKVEDKDLKD
                     AFKDFDGSSSSDSDSSK"
BASE COUNT         2080 a          988 c         1140 g         1652 t
ORIGIN      
        1 ttagatagtc ctttcatcgg gctttcgaca ctaccacagc cgcttttttc tgccatacaa
       61 gaaagcacat ttcaatcatt agaacgaatt acaactgtgg cgataaaaga agcagtagat
      121 ttcgttttaa ttgctggaga tatatatgat agtgaagatc aaagtgtccg tgctcaagcg
      181 cgtttttcaa aagaaatgaa acggttagaa gtggcgaaca tccccgtgtt tatgattcat
      241 ggaaatcatg attttataga aaagcataaa gaaaaactca cattaccaag caatgtgcac
      301 gttttttcag agcaagtaga agtaatgtcg cataaaaccg ccactggtgt gagcgttaat
      361 atttatggat ttagttataa tgaacgtcat attcgctcaa gccgagtaga taaatacaag
      421 attcaaggta atgctgattt tcacattgcg ttattacatg gctcagaagt atctagtagc
      481 gaagaacatg atgtgtacgc cccatttcgt gtacaagaaa ttagcaaaaa aggttttgac
      541 tactgggcac taggtcatat tcataagcga caattgcttg cagagtctcc tagcatttat
      601 tacccaggaa atattcaagg tcgaaatcgc aaagaatcag gtgaaaaggg cgccagtatc
      661 attacattat cagaagcaag tacaaccatt gatttcattg gaacaagtcc gattatttgg
      721 gaagaagctg taattacctt accagaaaat agtgagataa atgcctttta ccgagaaact
      781 actaagttgt tagagagcta tcaaggaaga agtcactctt attttcttca tataattgtt
      841 aagatggaaa ataaacaaaa aatcgatacg aatgattggt tacaaatgct tcaagaagaa
      901 gtagaaatca cagataacac atttgtatgg gtacacaaat taacaacgga gataacgaat
      961 caaagtaatt cacaaacatg gtacgaatca catttagcag gagaagaaat caagcattcg
     1021 tttgagacac tacaagatga atctgctttt tatcaagcag tagaggctct gtatcttgaa
     1081 agtggagtga gtagatactt ggatgatttg tctgaaattg atcgtgagag gctactacat
     1141 gatgctttaa tggaattagg gaggacgctt gcagaagtgg aaggtgatga taaatgagaa
     1201 taacatctat tgatatcatt ggttacggaa aatggtccga tgctcatttt aataatattg
     1261 ccaatttcca agtattctat ggtgaaaatg aagccggaaa atcaactatt atggctttta
     1321 tacatagtat tttgttcggt ttcccaacga aacaacaatc gataccgcgc atggagccaa
     1381 aaaacggtgg accatatggt ggaagattaa cactagaaga cacaccttta ggaaaagtca
     1441 tcattgaacg cttgaaagga aaagcaacgg gagatgttcg gatatattac ggggatggcc
     1501 aaaccgctgg agaagaaaaa ttaccagaaa ttatcggtga aattgatcga aacacttatg
     1561 aggctatttt ttcatttgat atacacggac tacaaaatat tcatcaatgg aaaaagaaag
     1621 aatttgaacg ctatttgtta gcaactggaa caacaggatc ggacgctctt ctaaaggcag
     1681 ccgaagcatt acaaaaaaaa ttagatagtc tatataaacc aagtgggcga aatccactaa
     1741 ttaaccaaca actaaaaaaa gtaaaagaag cccaacaagc ttttcaaaac gcaaaaaaac
     1801 aaaatgcgca atatgaacaa ttaatcaatg agaaagagca agcgatagta agacaaacag
     1861 agctacaaaa agaaaaaaca acaatgcgag ttgagttaga tgcattagca acattagcgg
     1921 atttgtggcc gttataccaa gaatggaaag cactcagtaa caaagcttct gaaacaacag
     1981 aagctacttt tccgcctgat ggagttattc gtttagaaca cttgaatctc cgagaaaaag
     2041 aatggcaaaa tcaacttatc caactagaag aacgccaaaa aaatctaatt agcaacaata
     2101 attatgaaca tagtgctttt tttgccgaaa atgaagcaga agttacttat ctaatcgaaa
     2161 cttatgcagc ttttggagag cgagaaatcc agttaaagaa tttaaagcaa gagattaagt
     2221 ttcagcaagt cgacacaaaa caaccactta gaatatggtc gagcgaatta gaacaaacaa
     2281 tgattcactt aaaagaaaaa gaacagtccc acaaagagca acaacatgat atccagctaa
     2341 aattaaaatt cactaataac tccgaagaaa aactccaaaa aaagattgat caaatagaag
     2401 cggagatgtg ggataataaa acattccaac aagcaaaaga aaaaatgcag gatagtccta
     2461 aaacttctaa aactaagacg atggtttcct tgggcatatt tgcagtagcg ttcgtcttga
     2521 tgatagtttt ccaagctatt tggagtgtag cacttgtttt tgtttctgca cttatagtgg
     2581 gttatgcttt tattactact ggaaaatctt ctccaacaaa taatgagcaa attctagctt
     2641 ttttagaaca aaagaaaata agacaagaat ggcaacaact tttgaacgaa atggatatgg
     2701 ttgcttcaca aattgctgaa ttaagagcag ctgagaataa actaagcgaa aatatctacc
     2761 aacatacgat ggaacttaga cacttctttt ctgacttggg aataaacact gaacctagtt
     2821 cgaactggca ttacgaactt agcatctaca aaaaaaacag tgaaaaaagg caattagcaa
     2881 tggaacttat ctccaaacta gaaccattag cagagaagca agaagcatat agagcaagat
     2941 tagaaaactt aaaattgcct atagattata cggacacgga agaaaaaatt acttttcttc
     3001 gtcaaggttt gctctattat cgaaaccacc taactgaaaa tgcaaagctc gctgaaaaat
     3061 tagaacaagt aacgatgcaa ttagacttag ttaaacaaga tttattactt gtaaagaaag
     3121 aaaaggcaga cttgctagaa cgtgcgaatg tgagtaacga agaagacttt cgtatggctg
     3181 caatgcgcgt aaaagaagaa cagaagtggc gtgaacgatt agttttaata gaagcgcaac
     3241 ttgaaccaga aaagcgagaa gctctaaata gatatgaaaa tcaagcaact atcaaagaaa
     3301 aagagctcca attagaagaa tcactgcggc aaatagaatt agaacaagag caacttcacg
     3361 cctcactcgc agcacaaaac catgcaatag acaaattgga agaaggcggg actttcgctg
     3421 tattgatgca agaattttat tcagaaaaaa gcaaattaca acaaatctca gctgagtgga
     3481 cagaaacaaa actagcgctt caaatgttgc aaaacacgat gcagcagtta caagaaggaa
     3541 aacttccaaa aacattaaaa ctggcaagtg aatattttaa tcatttaact agtgggaact
     3601 ataggaaagt atacttacaa gataataggc ttcaagtaga aagtaaggat agaattccgt
     3661 tcttcccgga agaacttagc caagcgacta aagagcagct atatttggct attcgttttg
     3721 cgctaattga tgttattcac aaagactttc cactaccaat cattattgat gatggatttg
     3781 tgcattttga ttcctcgaga atggggcaaa tgatgcagct gcttcaaaaa cgaaaaagtg
     3841 aaaaccaagt catttttttc acatgccatc aagaaactcg caaatatttt tccagtgagg
     3901 acatacgcgt gctataatgg gtgaagaaac ttcttactac agaaagaaag aaggcgatac
     3961 aatggaaaaa agattattag attttgaagt tggagaaaca gtagacctat tcttgctaat
     4021 taaatcaagt gtaaaaggga cggctagcaa cggaaagcca ttcttgagtc ttgttttaca
     4081 agataaatca ggtgaattag aagcaaaact atgggatgtt aaagaaagtg atgaagcgaa
     4141 ttacggggta caacaaatag ttcatcttat gggtgatatt caaaattatc gtgggcgaaa
     4201 acaattgaaa atccgccaaa ttagacaagc tacagcactg gacggtgtta gtgctagtga
     4261 attcatggaa accgcgccaa ttaataaaga agaaatggct gatgaaatca cacaatatat
     4321 tttcgaaatg aaaaatgcga atttgcaacg aattacgcgc gcattgctta aaaaatatca
     4381 agatgatttt tatgattatc cggcggcaat gcgtcatcat catgaatttg tttccggctt
     4441 gagttttcat gtagtttcga tgttacgact tgcaaaatca gttgccgatc tttacccatc
     4501 tgttaaccga gatttattat acgcaggtgt gattttacat gatttaggaa aagtcattga
     4561 gctttcaggc cctgtatcaa cgacgtatac actagaaggt aatttaattg gccatatttc
     4621 tatcgtagta gaagaagtga gtaaaattgc ggacgaactt tcgattgatg gtgaagaggt
     4681 cgtggtttta aaacatgttc ttctttctca tcacggcaaa ggtgaatggg gtagtccaaa
     4741 accaccactt gtgcgtgaag cagagatttt acaccaaatt gatttaatgg atgcttcctt
     4801 gaacatgatg gataaagtac taaaacatac aaaacctggt gaattcagtg aacgagtatt
     4861 tgggttagat aatcgttcgt tttacaatcc tatatttgaa taaaaaaaca cgcttggaaa
     4921 tttccaagcg tgttttttag tgcttattta gatgagtcgc tatcactgga tgaagagcca
     4981 tcaaaatctt taaaagcatc tttcaagtct ttatcttcca cttttacgtt agcatctttg
     5041 tattcttttt taagcgtttt ttgcatgttc tcagtagtta gttgagactc aaggtaagaa
     5101 gcttttacag cttttttatc tttttcgaaa gttgtttttg ttgcaggttt gtccatttgg
     5161 atgatgtggt atccgtattg tgtttttact ggagcgctga tgtcgccttt gtttttaagg
     5221 gcataagctg ctttttcaaa tgcaggatcc atcttaccag gaccgaatgg agctaattgt
     5281 ccaccattgt ctttagtagc agtgtctgta gagtattctt ttgctaaatc agcaaatttt
     5341 gcgccgtctt tcagtttttg ttcaacttct ttggctttgt tttcatcagc tacaagaata
     5401 tggcttacag taatatctgg ttgccatgtt tcatagtatt ttttaagtgt tttgtcgcta
     5461 gtgtcagtat tggcttcagt agctttttga actaacaagt tgtacttaag ttggcttttg
     5521 aatgatttct ccgttaagcc actttgagct aaaactgcag agaattgatc tccgtattgt
     5581 gatttatact cgttgaattt cttatcaaca tcttcgtcgc ttactttgta tttatctcca
     5641 agaatttttt cgaaagtaag ttgttgtaca aactcagaac catatttatc tttcattgcg
     5701 tcgtaaagct catcttgcgt tacatcgcca gagtctgtct taacgacatc tccaccgcca
     5761 ccgcacgctg ctagactgaa caatgccatc atcatgacaa gtccaagaat taatttcttc
     5821 ttcattaaat aaaacacact ccttagttgt tggaataatt
//
LOCUS       DABQVC010000176         5792 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.176,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000176 DABQVC010000000
VERSION     DABQVC010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5792
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.176"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..136
                     /locus_tag="IBJ56_002360"
     CDS             <1..136
                     /locus_tag="IBJ56_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3418607.1"
                     /translation="ISLILNSVILLIMVEKVRDDIYKRPPTITTTADSLADVLLKLLK
                     "
     gene            265..518
                     /locus_tag="IBJ56_002361"
                     /pseudo
     CDS             265..518
                     /locus_tag="IBJ56_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475645.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            690..3260
                     /gene="mgtA"
                     /locus_tag="IBJ56_002362"
     CDS             690..3260
                     /gene="mgtA"
                     /locus_tag="IBJ56_002362"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HAM3418608.1"
                     /translation="MKKLHVKKQGNNLLKESQLDRNKILEKLGVMETGLTNVEVTERL
                     AEFGPNQTVEEKKVSNLRLFIRAFNDPFIYILIMLMVISYLTDDMEATIIMALMILAS
                     GILGFVQTSRAERASYALKNIVKNKVNVIRNDEMIVVAQDEIVPGDLIEVSAGDIIPA
                     DARVISATDLLINQSALTGESIPSEKFVEDKRANPDLFERENLLFMGTDVLSGHGKAV
                     VLRTGSATFFGSLSIAATERRGDTSFDKGVKSISKLLFYFMVVMVPIVFMINGLMKGE
                     WLEAFLYAVAIAVGLTPEMLPMIVSTNLAKGAINMSSKKVIMKELSAIQNIGAMDILC
                     TDKTGTLTEDKLELVKYIDSAGETSESVLNMAYLNSYFQTGWKNVLDHAVIAKLDEST
                     ASGWTKVGEIPFNFDRRRLSVVVENNTETKMITKGAVEEMLTVCTHKEFGGTISTLTE
                     LEKSELQEMCAEMNRSGIRVIAVAYKTGKAGESFTKKDEEQMIIAGLLGFRDPVKAST
                     KEAITQLFKNQINVKVLTGDNEIVTKRICEEVGIPANGFLLGGDIEDLSDEELTRELR
                     KYHIFAKLTPMQKSRIIDLLKKAGHTVGFLGDGINDAPALRKADVGISVDTAADITKD
                     ASSVILLEKSLTVLNDAVMEGRNVFGNILKYLKMTASSNFGNVFSVLVASAFIPILPM
                     LSLHLLLQNLLYDFSQLTLPWDKMDRSFLKKPHQWEQKGMLRFILCIGPVSSIFDIAT
                     FLIMWFVFSANTVAEQALFHSGWFVVGLLTQTLVVHMIRTEKIPFIQSRAAAPVMIAT
                     LIVMALGIVIPFTGFGHSIGFVSLPGSYFPWLILILVGYMATMQLVKTLYIRKFREWI
                     "
     gene            3261..4391
                     /locus_tag="IBJ56_002363"
     CDS             3261..4391
                     /locus_tag="IBJ56_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HAM3418609.1"
                     /translation="MRAGRLLFVTYLLLAVWSLLLVYSTSYGVAIMRYKVDPSYFFNR
                     QLLFYGLGLLGLLVCSRINVKLFYQRVTLRILSLGLLALLVLVLITGNAANNAQRWLS
                     IFGVTFQPTETVKLLLILVIATVFLRKGCGVRVQHWVLGFLFLTIALVFLQPDLGTAV
                     ILGVIGVALFLTSGVGLSRLVRVFIWAFGLLILVATLIYFFHPDFFSTAKLGRFAFLD
                     PFNLENLDASYQLRNGYYAIGSGGIFGTGLGGSIQKLGYLPEPHTDFIMTVIAEELGV
                     FGVIWTIFLLMLLSFTALYIAVCSHFIFDSMVCIGVAAWISVQMFLNLGGVSGIIPLT
                     GVPLPFISYGGSSVVMLSCAVGFVMAAARRNLLAKSREVVYL"
     gene            4388..5491
                     /locus_tag="IBJ56_002364"
     CDS             4388..5491
                     /locus_tag="IBJ56_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HAM3418610.1"
                     /translation="MKRDIQYNRIILSVFLLSLVSCVAIYFAQKTNQYDTNFLGMQLV
                     FLVIGALTCFGVSRLPVEFLRHHAIWLYVIMVITLLGILIPNPLVQNINGATRWYRFA
                     GLSFQPSEVVKSIFIFVLAHFAVKYQAQKWKQLGILAALTGVVLLLIMKQPDLGTTIV
                     YGVTALAIILLAIKSTKLMVGIITLILTTVTVGMYVVVYHISLLEKIGFHAYQFARIQ
                     TWLDPTTDPDAVYQLNLSMKAVGSGMMTGSSGTNAYIPESHTDMIFSTIGHQFGFVGV
                     SLLLILFMLLIHQLIMAALLMKNTFSSLVLAGFAVSFAFNIFENIGMTVGLMPLTGIP
                     LPFISYGGSAVLGNFIAIGVVLAIIRSDADLVE"
BASE COUNT         1665 a          902 c         1317 g         1908 t
ORIGIN      
        1 gatttctttg attttaaata gtgttatttt gcttattatg gtggaaaaag tacgcgatga
       61 tatttataag cgcccgccaa cgattacaac aaccgcagat tcattagcag atgttttgtt
      121 aaaattattg aaataaatca cgaaaagtta aataaaagtt aagtatttta cattttgtct
      181 tgcgggctta gattttctat gttaaactcg tagacgatta gagcgataat aaatatgtag
      241 ttttgcctgt taggtgaggc tcctatgcaa acacaggcca ctgcccaaaa atgtccaaag
      301 acgccaatgg gtagaacagg gattgtcgga ttaaggcttt ccataatgtg gctaagagta
      361 ttctttacgt tgcatagtgc caaaacttta gcgaggggag tctgttttag tatgcgtata
      421 aactcagaag tccttgccaa ggttttggta aggacttttt tcatgtttat tatgaaaata
      481 attatctggg aattaaaatc tttttttcag ataattaagc ttagataaaa ttcgaaagga
      541 gatgaaggca atggaccacc atcagggaga ggaagtagaa gaaccggact cgtattatag
      601 taatcaagct gcaagagtga ctaaccttca tctctggcgc acataaacgt tattctcagc
      661 ttgcctagaa agaattggag gcaaggaaaa tgaaaaaact acatgtaaaa aagcaaggta
      721 acaatttgct caaagagtca caattggata gaaataagat tttagaaaaa ttaggtgtaa
      781 tggaaacagg actaacgaac gtcgaagtta cagaaagact agcagaattt ggtcctaatc
      841 aaacagtgga agaaaagaaa gtgtccaatt tacggttatt tatccgagcg tttaatgatc
      901 cttttatcta tattttaatc atgttaatgg tgatttcata tttaacagat gatatggaag
      961 cgacaataat tatggcctta atgatcttag ctagtggaat tcttggattt gttcaaacga
     1021 gtagagcaga gcgggctagc tacgcgctaa aaaatatagt gaaaaataaa gtgaacgtta
     1081 ttcgaaacga tgaaatgatt gtagtagcac aagatgaaat tgtgcccgga gatttaatcg
     1141 aagtttcagc gggggatatt attccagcag atgcacgcgt tatttcggca acggatttat
     1201 taattaatca gtcagcactt acaggcgaat caattccttc tgaaaaattt gtggaagaca
     1261 aacgcgctaa tccggacctt tttgaacggg aaaacttatt atttatgggg acagatgtgt
     1321 taagtgggca cggcaaggcg gttgttttac gaacaggaag cgcgacattt ttcggctcgt
     1381 tgtcaatcgc agctacagaa cgtcgtggcg acactagctt tgataaaggc gttaagtcaa
     1441 tctcgaaatt actcttttat tttatggtcg taatggttcc gattgtattt atgattaacg
     1501 gtcttatgaa aggcgagtgg ttagaagcat ttctttatgc ggtagcaatt gcggttgggc
     1561 tcactcctga gatgctaccg atgattgtca gcacgaactt ggcaaaaggc gccatcaata
     1621 tgtcgtcgaa aaaagtaatt atgaaagaac ttagtgcaat tcaaaatatc ggcgcgatgg
     1681 atattttatg tacggataaa acaggcacgc tcacagaaga taaactagaa cttgtaaaat
     1741 acattgatag tgctggtgaa acttctgaaa gtgttctaaa tatggcttat ttaaacagct
     1801 acttccaaac gggctggaaa aacgttttag atcatgctgt tattgccaaa ttggatgaaa
     1861 gtactgcatc aggatggaca aaagttggcg aaattccgtt taattttgat cggcgtcgtc
     1921 tgagtgtggt agtggaaaat aatacagaga caaagatgat tacaaaaggc gcggtagaag
     1981 aaatgctcac agtatgcact cataaggaat ttggtggcac aatttctaca ctaactgaat
     2041 tagaaaagag cgaacttcaa gaaatgtgtg cagaaatgaa tcgctcagga attcgagtaa
     2101 ttgcagtagc gtataaaact ggaaaggctg gtgaatcatt tactaaaaaa gatgaagaac
     2161 agatgattat tgcgggactc ctaggtttcc gtgatccagt aaaagcatcg acgaaagaag
     2221 ccattacaca gttatttaaa aaccaaatta acgtgaaggt tttgactgga gataacgaaa
     2281 ttgttacgaa acggatttgt gaggaagtag gtataccagc gaatggattt ttacttggcg
     2341 gagatattga agacttatct gatgaagaac tcacgcgcga attacggaaa taccacattt
     2401 ttgctaaatt aaccccaatg caaaaatcgc gtatcattga tttgctgaaa aaagcaggac
     2461 atactgttgg cttccttgga gacggaatta atgacgcgcc agcacttagg aaagcggatg
     2521 ttggtatctc tgttgataca gcagcagaca ttacaaaaga tgcaagctca gtaattttgc
     2581 tggagaaaag cttaacagtt ttaaatgatg cggttatgga agggcgtaac gtatttggta
     2641 atattttaaa atacttgaaa atgacagcta gttccaattt tggtaatgtg tttagtgttt
     2701 tggtcgcaag tgcatttatt cccattttac caatgctatc tttacatctt ttgctacaaa
     2761 acttgcttta tgatttctca caattaactc tcccttggga taaaatggat cggtcgtttt
     2821 tgaaaaaacc gcatcaatgg gaacaaaaag gaatgttgcg ctttattcta tgtattggcc
     2881 cagtaagttc gatctttgat attgcgacgt ttctaattat gtggtttgta tttagtgcaa
     2941 acacggtagc agagcaagct ttattccaca gtggttggtt tgttgtcggc ttactcactc
     3001 aaactctagt tgtgcacatg attcggacag agaaaatacc tttcattcaa agtcgggcag
     3061 ctgctccggt aatgattgcg acacttattg tgatggcatt aggtattgtg attccgttta
     3121 ccggatttgg tcacagtata ggttttgtga gcttgccagg tagttatttc ccatggttaa
     3181 tccttattct tgttggttat atggctacga tgcaactagt gaaaactctt tacattcgga
     3241 aattccggga gtggatttaa atgcgtgcgg gtcgattact ctttgtaacg tatttgcttc
     3301 tggcagtatg gagtttgcta cttgtttata gtacgagtta tggggttgca atcatgcgtt
     3361 acaaagtgga tcctagttat ttctttaata ggcagctact cttctatggt cttggtcttt
     3421 taggcttact agtgtgctcg cgtataaatg tgaaattatt ttatcagcgg gtgacgttgc
     3481 gtattctttc tttgggtctt ctagctttat tagtgttagt gcttataact ggtaatgcgg
     3541 ctaataatgc ccaaagatgg ctgtctattt tcggagtgac attccagcct actgaaactg
     3601 tcaaattgct attaatactt gtgattgcga ctgttttctt gcggaaaggt tgcggggtgc
     3661 gagtacaaca ttgggtgcta ggctttttgt ttcttactat agcattagtc ttcttacagc
     3721 cggatctcgg tacggctgta attttaggtg ttattggggt cgctttgttt ttaacgagcg
     3781 gagttggcct ctcacgcctc gtccgggtat ttatctgggc ttttggtctg ttaatccttg
     3841 tagcaacact gatttatttc tttcatcctg atttttttag cactgcaaaa ttgggcagat
     3901 ttgctttttt agatcctttt aaccttgaaa acttagatgc ttcttatcaa cttagaaatg
     3961 gctactatgc gattggaagt ggagggatat ttgggactgg attaggaggt agcatccaga
     4021 aattaggtta tttgccggag ccgcatacgg attttattat gacggttatt gcggaagagc
     4081 ttggtgtttt tggtgttatt tggacgattt ttttgttaat gttactcagt tttaccgcac
     4141 tttatattgc tgtttgtagt cattttattt tcgattcgat ggtatgtatt ggagttgccg
     4201 cttggatttc ggtgcagatg tttttgaatc ttggaggagt gagtgggatt attccgctta
     4261 ctggagttcc actgccgttt attagttacg ggggtagttc ggtagtcatg ctttcgtgcg
     4321 cagttgggtt tgtaatggct gctgcaaggc ggaatttact agctaaatct agagaggtcg
     4381 tgtatttatg aagcgggata ttcaatataa tcgaattatt ttatcggtgt tcttattgtc
     4441 gttagtgagt tgtgtagcga tttattttgc tcagaagaca aaccaatatg ataccaattt
     4501 tttaggaatg cagttggtgt ttttggtaat tggggcactt acatgttttg gtgtttcgcg
     4561 cctgccggta gagtttttgc gacatcatgc gatttggctt tacgtcatta tggtgattac
     4621 actacttgga atactcatac caaaccctct agtccaaaat ataaacgggg caacgcggtg
     4681 gtatcgcttc gctggattgt ctttccaacc atctgaagtt gtcaaatcga tttttatttt
     4741 tgtattggca cattttgctg taaaatatca agcgcagaaa tggaaacagt taggcatttt
     4801 agcggcgctt actggggttg ttttgctatt aattatgaaa cagccagatc ttggtacgac
     4861 aattgtttac ggagttacgg cacttgcgat tattttgctc gctataaaat caactaaatt
     4921 gatggtgggt attataactc taattttaac tacagtgacg gttggaatgt atgtagtcgt
     4981 ttatcatatt agtttactgg aaaaaatcgg ctttcatgcg tatcaatttg cgcggattca
     5041 gacgtggctt gaccctacta ctgatccaga tgcggtctat caacttaatt tatcgatgaa
     5101 ggctgttggt tcggggatga tgactggtag ttctggtaca aacgcttata ttcctgaaag
     5161 tcatacggat atgatcttta gtacgattgg tcatcaattt ggctttgttg gtgtcagttt
     5221 gttgttaatt ttatttatgt tacttattca tcaattaatt atggcagctc ttttgatgaa
     5281 gaatactttt tcttcgctag ttttagcggg ttttgctgta agttttgcgt ttaatatttt
     5341 tgaaaatatt ggtatgacag tcggacttat gccacttact gggattccac ttccttttat
     5401 tagttatggt gggagcgcgg tgcttggtaa tttcattgca ataggcgttg tattagcgat
     5461 tattcggtca gacgccgatt tagtagaata aaaaaacagc tgtttgaact atcccctaaa
     5521 aacattaatt ttaggggagg tccagacaat gttgacgaag gactttttgc ttggatagag
     5581 aatactgtaa ttatatgata caattcttgt gaaatagaaa acaaactcag tgagtggaaa
     5641 ttaaataatg ggaggcagaa gtatgtcttg gataacgccg tacgttccaa ttataataga
     5701 agctgtttta gttattggta ttgtttttat aggatttaag ctttataaaa agtttggatt
     5761 atcaaagaaa taacatgaat aaaaaagacc cc
//
LOCUS       DABQVC010000177         5604 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.177,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000177 DABQVC010000000
VERSION     DABQVC010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5604
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.177"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..154)
                     /locus_tag="IBJ56_002365"
     CDS             complement(<1..154)
                     /locus_tag="IBJ56_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HAM3418611.1"
                     /translation="MFSILMAIIQITGIFIAIQILTNKVFSIKEGLVTIAIAMLAFPL
                     FTLVQYW"
     gene            complement(250..411)
                     /locus_tag="IBJ56_002366"
     CDS             complement(250..411)
                     /locus_tag="IBJ56_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic lactone autoinducer peptide"
                     /protein_id="HAM3418612.1"
                     /translation="MKNMNKSVGKFLSRKLEEQSMKVADSSMSKACFMFVYEPKSPFV
                     KMQEKNENK"
     gene            complement(395..1009)
                     /locus_tag="IBJ56_002367"
     CDS             complement(395..1009)
                     /locus_tag="IBJ56_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory gene regulator ArgB-like protein"
                     /protein_id="HAM3418613.1"
                     /translation="MSNFTAKVPLSERMADVLISKDRWKDDEEGYLKVKYGLEIILIN
                     VMKFALVYGIALVTGLLLQTVTVHLSYLWLRRYSFGLHATKTLNCTLISLMMFVLAPF
                     VFQNIPSNNWIVLGTFGFILLNMFLFAPADTESLPLIGEEHRKTLKRKAMIGTLILTG
                     IALLIPFAEMKTLIMVGSLFQVISINPLTYKLLKRRYRNYEKYE"
     gene            complement(1266..1877)
                     /locus_tag="IBJ56_002368"
     CDS             complement(1266..1877)
                     /locus_tag="IBJ56_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HAM3418614.1"
                     /translation="MYRKLATVGMTVLLVGALSACSFNDDKDTSSNNSSNETTSSKSS
                     NNESSSDSLQNKSFDMSYEDAINAFKDKHSDAEISSVELEKSLGKYVYKVDGISNDNE
                     YEMKFNAETKEQLSDETDRLDREDAGGVEKENEKLSLDGIKSPKEAMDKAVSEQAGDV
                     TSWKIERELDTTYYEVTVKQDNNKYEIKLNAKTLEILQTEQDD"
     gene            complement(2030..2269)
                     /gene="rpsR"
                     /locus_tag="IBJ56_002369"
     CDS             complement(2030..2269)
                     /gene="rpsR"
                     /locus_tag="IBJ56_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HAM3418615.1"
                     /translation="MAGGRRGGRRRKKVCYFTSNGITHIDYKDVELLKKFVSERGKIL
                     PRRVTGTSAKYQRKLTVAIKRSRQMALLPFVAEEK"
     gene            complement(2313..2849)
                     /gene="ssb"
                     /locus_tag="IBJ56_002370"
     CDS             complement(2313..2849)
                     /gene="ssb"
                     /locus_tag="IBJ56_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAM3418616.1"
                     /translation="MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGER
                     EADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQF
                     LEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
                     PFASDGKPIDISDDDLPF"
     gene            complement(2905..3198)
                     /locus_tag="IBJ56_002371"
     CDS             complement(2905..3198)
                     /locus_tag="IBJ56_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HAM3418617.1"
                     /translation="MARKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEW
                     GKRRLAYEINDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIKEEA"
     gene            complement(3477..4709)
                     /gene="arcA"
                     /locus_tag="IBJ56_002372"
     CDS             complement(3477..4709)
                     /gene="arcA"
                     /locus_tag="IBJ56_002372"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HAM3418618.1"
                     /translation="MKMEQALNITSEIGKLQTVLVKRPGSELENITPEYLESLLFDDI
                     PYLKMMQKEHDFFAKTMKDSNIEVLYLEKLAAEALREANNKESFLTKMIKESNQMDES
                     ALYVRDYLMSFDEEEMIRKLMSGLKKSEIPERKKKHLNEMMDEQYPFFLDPLPNLYFT
                     RDPAAVIGNGVTINRMFQPARRRESMFIELILKHHPRFSNQEIPVWSGRGEPFSLEGG
                     DELVLNEETVLVGVSERTDARAVERLAESLFSRSPKIKRVLAVEIPETRSFMHLDTVF
                     TMVNFAQFTIHPAIQNQQGELNIYILEKSENGLEITPRRDFQRVIAEVLDEPEIDFIP
                     CGGEDVIVSAREQWNDGANTLAIAPGEVITYDRNQVSNDLLRSAGIKVHEVISSELSR
                     GRGGPRCMTMPLVRENLK"
     gene            complement(4788..5447)
                     /locus_tag="IBJ56_002373"
     CDS             complement(4788..5447)
                     /locus_tag="IBJ56_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAM3418619.1"
                     /translation="MDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLV
                     VFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPE
                     DSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNY
                     NILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSA
                     E"
BASE COUNT         1692 a         1142 c          839 g         1931 t
ORIGIN      
        1 accagtattg aactaatgta aataaaggga aggctagcat agcaattgct atagtaacca
       61 atccctcttt aattgaaaaa actttgtttg ttaaaatctg gattgcaata aaaatacccg
      121 ttatctgtat aattgccatc aaaatactaa acatattaat cctccactgt ctaaaatatc
      181 tatgtttaaa tatgtaagtt tgccttcttt ttattttagc atgaattttg atgttataca
      241 gttttaaatt tatttatttt cgtttttctc ttgcattttc acaaatggac tttttggttc
      301 gtatacaaac atgaaacaag ctttactcat agaagaatcc gcaactttca tggattgttc
      361 ttctagtttt ctagaaagga atttaccaac tgatttattc atatttttca tagttccgat
      421 acctcctttt caatagtttg taagtaagtg gattaatact tatcacctga aacaaagatc
      481 ctaccatgat taatgttttc atctctgcga atggtattag caacgcaatt cccgttaaaa
      541 ttagcgtccc tatcatcgct tttcttttta gtgttttccg gtgttcttca ccgattaaag
      601 gcaaactttc tgtgtctgcc ggagcgaata gaaacatgtt gagcagtata aatccaaatg
      661 tacctaaaac aatccaatta ttagagggga tattttgaaa aacaaatggc gcaagcacaa
      721 acatcatcaa gctaattaac gtgcaattca atgttttggt tgcatgtaat ccaaaagaat
      781 accgtctgag ccataaatat gacagatgta ctgtcactgt ttgcagtaat aaccctgtta
      841 ctaaggcaat accgtatacg agagcaaact tcatgacatt aattagaatt atttccagtc
      901 catattttac ttttaaataa ccttcttcat catctttcca gcggtctttc gaaatcagca
      961 catccgccat tctttctgac aaagggactt ttgcagtaaa attactcaac taattcacct
     1021 ccactaatat tttacaacga atttacccat aataaccaaa aatgtaatga aatgtccgat
     1081 tcttgtcatg aacgaccaaa aaagagcaaa attgccgatt ttttggatac atttcagaat
     1141 attcaatcgt gtaaaaagga ctgtatgata ggtttaaaaa cccatattaa tattttattt
     1201 aagtaagttt attcattaaa aaagccaact gtaaaagaat gttcacagtt ggcttttcca
     1261 ttttattaat cgtcttgttc cgtttgaaga atttctaaag tttttgcatt tagtttgatt
     1321 tcgtatttgt tattatcttg ttttactgtc acttcataat aagttgtatc taattctctt
     1381 tctattttcc aacttgttac gtcaccagct tgttcagaaa cagccttatc catggcttct
     1441 tttggtgatt taattccatc taagctaagt ttttcgtttt ctttttcaac tccacctgca
     1501 tcttctcggt caagtcgatc tgtttcatca cttagttgtt cttttgtttc agcattgaat
     1561 ttcatttcgt attcattatc atttgaaatc ccatcaactt tatagacata ttttcccaag
     1621 cttttctcta attcaacgct agatatttct gcatcactat gtttgtcttt gaatgcgtta
     1681 atcgcgtctt cataactcat atcgaagctt ttgttttgca agctatctga tgaactttca
     1741 ttattactgc ttttgctact agtagtttca ttgctgctat tatttgatga tgtatcctta
     1801 tcatcattaa aactacatgc tgataatgct cctactaata ataccgtcat ccctactgtt
     1861 gctaattttc tatacataat tgtttccccc tgtgcatttt tttacttcta tataagaata
     1921 acatgaataa atagcattaa cttccttctt aggtcctagg ttcacatgat ccaaggtcta
     1981 atttatgaaa aaacagtcta gaaatgaatt ctagactgtt aaaattaatt tatttttctt
     2041 cagcaacaaa tggtagtaat gccatttggc gtgagcgttt gatagcaaca gtaagtttac
     2101 gttgatattt agcgcttgtt ccagttacac gacgaggtaa aattttacca cgttcggaaa
     2161 cgaatttttt aagaagttct acatctttat agtcgatatg cgtaatacca ttggaagtaa
     2221 agtaacatac ttttttccga cggcgtccgc ctctgcgtcc tccagccatt gaaagttcct
     2281 cctatcttaa agttcaaacc gctaaaatga atttagaatg gcaaatcgtc atcagaaatg
     2341 tcgattggct taccatcact tgcaaaagga tcattattag tggattgata attttgattt
     2401 tgagattgtt gctggtcctg tccgaatcca ccgttatttg taggtgcttg tccgaagtta
     2461 tttccaccgc tattataatt attgttgtta ttgccacttt gatagttatt tccgccaccg
     2521 ccattagaat tacgcggttc aaggaattga acactctctg ctacaatttc agtcacataa
     2581 acacgtttac cgtcgttccc ctcgtaatta cgagtttgaa cacggccatc aacgcccgcc
     2641 atgcttcctt tcttcaggaa attagcaacg ttttctgccg gtttacgcca aacaacacaa
     2701 ttaataaagt cagcttctcg ttctccttgt tggttagtga aagtgcgatt tacagctaat
     2761 gtaaaagtcg caacagccac accagctgga gtgtaacgta attcaggatc ttttgttaag
     2821 cgtcctacaa gtactacacg attcatcatg caaaaccaac ctcctctcgt ttagtaaatc
     2881 aaggtcctag ccttgaatga attcttatgc ttcttcttta attaccatat gacgaatgat
     2941 atcatcagaa attttagcta aacggtcaaa ttcgttgata gaatctgctt tatcagcgtt
     3001 taatttcacg atgtggtaaa aaccatcacg atagtcattg atttcgtatg ctaagcgacg
     3061 tttaccccat tcttttgatt cgatgatctc cgcaccattt tcagttaaga ttccgtcaaa
     3121 gcgttctaca acagcttttt tctcatcttc ttcaatgttt gggcgaatga tgtacataat
     3181 ttcgtacttt ctagccatct actctacacc tccttgtggt cttaagcggc tctgatatag
     3241 catgaaacca taccatatcc ctgaaattca gactgccttt agcaagcctt aaaatcaaga
     3301 gcgagcaagg aataatttat aattactcac aataaaatat tatatcatag cgctaactaa
     3361 ccagcaagat atttctcgaa aattctggtt tgaaaacact atagcacatc tcaaaatagc
     3421 cggcaatact ttttacgaaa gtcttgtttt gcaggggaat tctcgttttt aaagacttat
     3481 tttagatttt ctctaacaag cggcatcgtc atacatcttg gccccccgcg gcctctagaa
     3541 agctccgaac taatcacttc atgaacctta atacccgcac ttcttaacag atcgtttgat
     3601 acttgatttc gatcatatgt aattacttct ccaggagcaa ttgctaacgt gtttgcccca
     3661 tcattccact gctctcgcgc cgaaacaatt acatcttctc cgccacaagg aataaaatca
     3721 atttctggct catccaaaac ctccgcaatc acgcgctgaa aatctcttcg cggagtaatt
     3781 tctaatccat tctcactttt ttctaaaatg tatatattaa gttctccttg ttgattttga
     3841 attgctggat gaatcgtgaa ctgtgcaaaa ttaaccatgg tgaaaaccgt atccaaatgc
     3901 ataaatgacc ttgtttcagg aatttcaaca gctaaaactc gtttaatttt tggagaacga
     3961 ctaaataaac tttctgcaag ccgttcgact gctcgtgcat ccgttcgctc agatacaccg
     4021 acaagaacag tctcttcatt tagaactaac tcatctccac cttctaaaga aaacggctct
     4081 ccgcgccctg accataccgg aatttcttga ttactaaaac gaggatgatg tttcaaaatc
     4141 agctcgataa acatcgactc tcgccttcta gctggctgga acattctatt aatcgtcaca
     4201 ccgttaccaa taacagctgc tggatctcga gtgaaataca aatttggtaa tggatctagg
     4261 aaaaatggat attgttcgtc catcatttca tttaagtgtt tctttttgcg ttcggggatt
     4321 tctgattttt ttaaaccgga cataagtttt ctaatcattt cttcctcgtc aaaagacatc
     4381 aaataatctc gtacatatag cgcactttcg tccatttgat tggattcttt aatcattttc
     4441 gttaaaaaag actctttatt gttagcttct cgtaatgctt cagcagctag tttttctaag
     4501 tagagtactt cgatgtttga atctttcatt gttttagcaa aaaaatcatg ttccttctgc
     4561 atcattttta aatacggtat atcatcaaat aataaagatt ctaggtattc tggtgtgata
     4621 ttttcgagtt cagaacccgg cctctttaca agaactgttt ggagtttgcc aatttcagat
     4681 gtaatattca atgcttgttc cattttcatc acctcttcct aactaattac cccaaaagtt
     4741 tgtcatgtat gcgagagatt tcccgggaaa taaaaaaagc acagagatta ttctgcgctt
     4801 tttttgtcca ttttactttt aatgaacgaa actaccattg ggataacgga aactacgata
     4861 attccgatta ctactaacga gaagttgtct ttaacgattg ggaagttccc gaagaagtaa
     4921 cccgcgagcg tacaaagtaa tacccaaaca gttgccccta aaatattata atttaagaaa
     4981 taacgataat tcatacggct tgctccagct acaaatggcg cgaacgtgcg aataaaaggc
     5041 atgaacctag caataaaaat tgtttttcca ccatgtttat tgaagaacgc ctccgctttt
     5101 tccatttttt ctttatttat tagtttccca aaccagctat cttctggtat ggatgttcca
     5161 atctttttac cgatatgata gttcactgta tcgcctagaa ctgctgctaa ccataaagta
     5221 ataattagcg gaacaatatg taaaatcgaa ccatctaata cagataatgc accggctgcg
     5281 aatagtaatg aatctcctgg taaaaatgga aatactacca atccagtctc tataaaaaca
     5341 atcaggaaca aaataatgta agtccaaatt ccaaaattat ttataatctc cactaaatgt
     5401 tggtcaatgt gcaaaataaa atcaatgata taggtaataa aatccaccag gcactcactt
     5461 ccttttcttt ttttaaaagt caaagttcat tttaccacaa gtcaagtctc cttgtatcag
     5521 acttgtgact tatttatcaa ttcttaacaa ttaaaaacta ctagtttcat cttccataaa
     5581 ctggtataag attagctcca taat
//
LOCUS       DABQVC010000178         5598 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.178,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000178 DABQVC010000000
VERSION     DABQVC010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5598
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.178"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            585..2987
                     /gene="inlA"
                     /locus_tag="IBJ56_002374"
     CDS             585..2987
                     /gene="inlA"
                     /locus_tag="IBJ56_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 internalin InlA"
                     /protein_id="HAM3418620.1"
                     /translation="MRRKRYVWLKSILVAILVFGSGVWINTSNGTNAQAATITQDTPI
                     NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQ
                     INFSNNQLTDITPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITDIDPL
                     KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK
                     VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT
                     DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP
                     ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH
                     NQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDG
                     GSYAEPDITWNLPSYTNEVSYTFNQSVTIGKGTTTFSGTVTQPLKAIFNAKFHVDGKE
                     TTKEVEAGNLLTEPAKPVKEGYTFVGWFDAQTGGTKWNFSTDKMPTNDIDLYAQFSIN
                     SYTATFDNDGVTTSQTVDYQGLLQEPTAPTKEGYTFKGWYDAKTGGDKWDFATSKMPA
                     KNITLYAQYSANSYTATFDVDGKTTTQAVDYQGLLKEPKTPTKAGYTFKGWYDEKTDG
                     KKWDFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSNTS
                     NTSTGNSASTTSTMNAYDPYNSKEASLPTTGDSDNALYLLIGLLAVGTAVALTKKARA
                     SK"
     gene            3072..4964
                     /locus_tag="IBJ56_002375"
     CDS             3072..4964
                     /locus_tag="IBJ56_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3418621.1"
                     /translation="MKEKHNPRRKYCLISGLAIIFSLWIIIGNGAKVQAETITVSTPI
                     KQIFPDDAFAETIKDNLKKKSVTDLVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTK
                     LFLNGNKLTDIKPLANLKNLGWLFLDENKIKDLSSIKDLKKLKSLSLEHNGISDINGL
                     VHLPQLESLYLGNNKLTDITILSRLTKLDTLSLEDNEISDIVPLSGLTKLQNLYLSKN
                     HISDLRALAGLKNLDVLELFSQECLNKSINHQTNLVVPNTVKNIDGSLVTPEIISDDG
                     DYEKPNVKWHLPEFINEVSFIFYQPVTVGKAKARFHGRVTQPLKEVYTVSYDVDGTVI
                     KTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFSTDYMSGNDFTLYAIFKAET
                     TEKAVNLTRYVKYIRGNAGIYKLPREDNSLKQGTLASHRCKALTVDREARNGSELWYR
                     LKNIGWTKAENLSLDRYDKIEYDKGVTAYARVKNAPGNAVWTKPYNTAGATLVNKLSV
                     YQGKNMRILREAKTPITTWYQFSIDGKVIGWVDTRALNTFYKQSMEIPIQLTRYVNAN
                     KGNEAYYKVPVVDSPIKWGTLAKYKNQTLIVDRTATVEGQLWYRIRTSSTFIGWTKAA
                     NLRAQK"
     gene            complement(5079..5564)
                     /locus_tag="IBJ56_002376"
     CDS             complement(5079..5564)
                     /locus_tag="IBJ56_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HAM3418622.1"
                     /translation="MKGLKKMKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTN
                     PANIRKIMSNLKKSNLITTQTGKANPILARPPEEISLLDVYKSIEGNTNLIHVDPKTN
                     PDCIVGANIQQVLASKYDLLQQKIEFEMEKIKLDSIVRDISVLESKDRPQNMEIIEKY
                     L"
BASE COUNT         2032 a          935 c         1052 g         1579 t
ORIGIN      
        1 agaaacaaaa agaactatca accagcaacg catacaaagt aaaaagataa cacaatcaca
       61 ccgtgttatc tttttttgta tacatttcac caaaaatctc gacatcctta tgtgttattt
      121 tgaacataaa gggtagagga taacataagt taattctttt ttggagaaaa atagctatta
      181 ttatttaatg ggctttgaaa ggggtgatta tatagaagaa gtgaaaaaaa gagagttttg
      241 gcgggaagag tgcggggctt gagttcgtca ataatagacc attttaaaag gtggaatgac
      301 acgtgtggta tcaacataac atgatttgca tggttgaatt cctattaagc ttcgatagtg
      361 aaatacataa aaatattata tatagggaaa atgtgctgga acgaacgaga tgaaagatat
      421 cactaagcag ctccgtagac agattaacta ctgaatacca taggaacaat tcatggggcg
      481 catagtttaa taaagtaagc agacatgatt tttcggatgc aggagaaaat cctatacaac
      541 gaaacctgat attgtttcta actattgaaa aaggagtgta tatagtgaga agaaaacgat
      601 atgtatggtt gaaaagtata ctagtagcaa tattagtatt tggcagtgga gtatggatta
      661 acacgagtaa cgggacaaat gctcaggcag ctacaattac acaagatact cctattaatc
      721 agatttttac agatacagct ctagcggaaa aaatgaagac ggtcttagga aaaacgaatg
      781 taacagacac ggtctcgcaa acagatctag accaagttac gacgcttcag gcggatagat
      841 tagggataaa atctatcgat ggattggaat acttgaacaa tttaacacaa ataaatttca
      901 gcaataatca acttacggac ataactccac ttaaagattt aactaagtta gttgatattt
      961 tgatgaataa taatcaaata gcagatataa ctccgctagc taatttgtcg aatctaactg
     1021 gtttgacttt gttcaacaat cagataacgg atatagaccc gcttaaaaat ctaacaaatt
     1081 taaatcggct agaactatct agtaacacga ttagtgatat tagtgcgctt tcaggtttaa
     1141 ctagtctaca gcaattatct tttggtaatc aagtgacaga tttaaaacca ttagctaatt
     1201 taacaacact agaacgacta gatatttcaa gtaataaggt gtcggatatt agtgttctgg
     1261 ctaaattaac caatttagaa agtcttatcg ctactaacaa ccaaataagt gatataactc
     1321 cacttgggat tttaacaaat ttggacgaat tatccttaaa tggtaaccag ttaaaagata
     1381 taggcacatt ggcgagttta acaaacctta cagatttaga tttagcaaat aaccaaatta
     1441 gtaatctagc accactgtcg ggtctaacaa aactaactga gttaaaactg ggagctaacc
     1501 aaataagtaa catcagtccc ctagcaggtc taaccgcact cactaactta gagctaaatg
     1561 aaaatcagtt agaagatatt agcccaattt ctaacctgaa aaatctcaca tatttaacgt
     1621 tgtactttaa taatataagt gatataagcc cagtttctag tttaacaaag cttcaaagat
     1681 tatttttcta taataacaag gtaagtgacg taagctcact tgcgaattta accaatatta
     1741 attggctttc ggctgggcat aaccaaatta gcgatcttac accattggct aatttaacaa
     1801 gaattaccca attaggattg aatgaccaag aatggacaaa tccaccagtg aactacaaag
     1861 taaatgtatc cattccaaac acggtgaaaa atgtgacggg cgctttgatt gcaccagcta
     1921 ctattagcga tggtggtagt tatgcagaac ctgatataac atggaattta cctagttata
     1981 ccaatgaagt aagttatacc tttaaccaat ctgtcaccat tggaaaagga acgacaacat
     2041 ttagtggaac tgtgacgcag ccacttaagg caatttttaa tgctaagttt catgtggacg
     2101 gcaaagaaac aaccaaagaa gtggaagctg ggaatttatt gactgaacca gctaagcctg
     2161 taaaagaagg ttatacattt gttgggtggt ttgatgccca aaccggcgga actaaatgga
     2221 atttcagtac ggataaaatg ccgacaaatg acatcgattt atatgcgcaa tttagtatta
     2281 acagctacac agcaacgttt gataatgacg gtgtaacaac atctcaaaca gtagattatc
     2341 aaggcttgct acaagaacct acggcaccaa caaaagaagg ttatactttc aaaggctggt
     2401 atgacgcaaa aactggtggt gacaagtggg attttgcaac tagtaagatg cctgctaaaa
     2461 acatcacctt atatgctcaa tatagcgcca atagctatac agcaaccttt gatgttgatg
     2521 gaaaaacaac gactcaagca gtagactatc aaggacttct aaaagaacca aaaacgccaa
     2581 caaaagccgg atatactttc aaaggttggt atgacgaaaa aacagatggt aaaaaatggg
     2641 attttgcgac agataaaatg ccagcaaatg atattacgct gtacgctcaa ttcacgaaaa
     2701 atcctgtggc accaccaaca actggaggga acactccgcc gactacaaat aacggaggga
     2761 acactacacc accttccgca aatatacctg gaagcaacac atctaacaca tcaactggga
     2821 attcagctag cacaacaagt acaatgaacg cttatgaccc ttataattca aaagaagctt
     2881 cactccctac aactggtgat agcgataatg cgctctacct gttgatagga ttgttagcag
     2941 taggaactgc agtggctctt actaaaaaag cacgtgctag taaatagaag tagtgtaaag
     3001 agctagatgt ggttttcgga ctatatctag cttttttatt ttttaataac tagaatcaag
     3061 gagaggatag tgtgaaagaa aagcacaacc caagaaggaa atattgttta atctcaggtt
     3121 tagctattat ttttagttta tggataatta ttggaaacgg ggcgaaagta caagcggaga
     3181 ctatcaccgt gtcaacgcca atcaagcaaa tttttccaga tgatgctttt gcagaaacaa
     3241 tcaaagacaa tttaaagaaa aaaagtgtga cggatctagt gacacaaaat gaattaaata
     3301 gtatagatca aatcattgcg aataatagtg atattaaatc cgttcaagga attcagtatt
     3361 tacccaatgt gacaaagtta tttttaaacg ggaataaact aacagatata aagcccttag
     3421 caaacttgaa aaatttagga tggctttttt tagacgaaaa taaaattaaa gacctaagtt
     3481 cgatcaagga cttaaaaaaa ttaaaatcac tttctttgga gcataatggt ataagtgata
     3541 taaatggact tgttcattta ccgcaactgg aaagtttgta tttgggaaat aataaactaa
     3601 cggatataac gattctttca cgtttaacta aactggatac tttgtctctt gaagataacg
     3661 aaattagtga tattgtgcca ctttcaggtt taactaaatt acagaatcta tatttaagta
     3721 agaatcatat aagcgattta agagcgttag cagggcttaa aaatctggat gttttagaat
     3781 tgtttagcca agaatgtttg aataaatcta ttaatcatca aacgaatcta gttgttccga
     3841 acacagtaaa aaacattgat gggtcgcttg ttactccaga aataataagt gatgatggcg
     3901 attatgaaaa accgaatgtc aaatggcatt taccagaatt tataaatgaa gtaagtttta
     3961 ttttctatca accagttact gttggaaaag caaaagcacg atttcatggg agagtaaccc
     4021 aaccactgaa agaggtttac acagtaagtt atgatgttga tggaacggta ataaaaacaa
     4081 aagtagaggc agggacgcga ataactgcac ctaaacctcc gaccaaacaa ggctatgttt
     4141 ttaaaggctg gtatactgaa aaaaatggtg gacatgagtg gaattttagt acggattata
     4201 tgtccggaaa cgattttact ttgtacgcga tttttaaagc ggaaacgact gaaaaagcag
     4261 tgaatttaac acgctatgtt aaatatattc gcgggaatgc ggggatctac aaacttccaa
     4321 gagaagataa ctcgcttaaa caaggaacgc ttgcctcgca ccgctgtaaa gctttaactg
     4381 ttgatagaga agcgcgaaat ggcagtgaat tatggtacag gttaaaaaat attggctgga
     4441 ccaaagctga aaatctttcc ttagaccgtt acgataaaat agaatatgac aaaggtgtta
     4501 ctgcttatgc aagagtgaaa aatgcgccag ggaatgcagt ttggacgaaa ccttacaata
     4561 cagccggcgc aaccctcgtg aacaagcttt ccgtctacca aggtaaaaat atgcgaatat
     4621 tgcgcgaagc caaaacacca attaccacgt ggtatcaatt tagcattgat ggtaaagtga
     4681 ttggttgggt cgatacgcgt gcacttaaca cattttataa acaaagcatg gaaataccaa
     4741 tccaattaac tcgatacgtc aacgcaaata aaggaaatga agcatactat aaagttccgg
     4801 tagtagatag cccaatcaaa tggggaactt tagccaagta taaaaatcaa acattaattg
     4861 tcgatcgaac agccaccgtt gaaggtcagc tttggtatcg gataagaact agctccactt
     4921 tcattggttg gacgaaagct gctaatttaa gggcacagaa atgacctacg aaaagctatt
     4981 tctaaatatt ggggaagaaa aaagctacaa ctttaaattc atgaaaaaag aactgattcg
     5041 ctgaaaacgg atcagttctt ttttctttgg acttattttt acaaatactt ttcgataatt
     5101 tccatattct gcggccggtc tttgctttca agtacagaaa tatcacgaac aatactatct
     5161 aatttaattt tttccatttc aaattctatt ttttgttgga gcaaatcgta tttactcgca
     5221 agaacttgtt ggatattggc tccgacaatg cagtctggat tggtttttgg atcaacgtga
     5281 attaaattcg tattgccttc tatactctta taaacatcaa gcagtgaaat ttcttctggt
     5341 ggtctagcaa gaatcggatt tgctttgcca gtttgcgtag taattaaatt ggactttttc
     5401 aaattactca tgatttttct aatgttagcg ggatttgttt ttacgctacc agcaataatt
     5461 tcactcgata acaaattcgt atttttaaaa atttctatat aagccaaaat gtggatagca
     5521 tcactaaatt ggatagagta tttcattttt ttcaatcctt tcaaattttc ttcttgactt
     5581 atcttatcat aatgttta
//
LOCUS       DABQVC010000179         5582 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.179,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000179 DABQVC010000000
VERSION     DABQVC010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5582
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.179"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            156..1274
                     /locus_tag="IBJ56_002377"
     CDS             156..1274
                     /locus_tag="IBJ56_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HAM3418623.1"
                     /translation="MKSRKKGIILVLSIIIIFSIGLLVNNIMTNNKDTAKPKKKTVAA
                     VKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVLAEKGMDYPFNNVREELKSSDYTFVD
                     LETAITTRTKKVPYQEFWIKSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAA
                     LRANNLAYVGAGKNEDEAYQLKVADIKGNKVGFMSFCHFFPNTGWIADEDTPGVTNGY
                     DINLVEEKIKEERAKNKDIDYMVVYFHWGVEKTNTPVDYQTQYVKKLVDDHLVDAIVA
                     SHPHWLQSFEVYKDVPIAYSLGNFLFPDYVSGHSAETGIYKLNFNQGKVTAHFDPGII
                     SGNQINMLDGSAKTAQLNYLQSISPNATINSNGDISAK"
     gene            complement(1325..1657)
                     /gene="qoxD"
                     /locus_tag="IBJ56_002378"
     CDS             complement(1325..1657)
                     /gene="qoxD"
                     /locus_tag="IBJ56_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit IV"
                     /protein_id="HAM3418624.1"
                     /translation="MTQNNKSNAAHAEGGIPWKHIVGFALSVILTLLAVWVALYSTLT
                     TNVKVVIIFIFAFIQAALQLLMFMHMTEGRDGKIQIGNILFAAFIAIVVVIGSYWVME
                     IGHMNHLL"
     gene            complement(1659..2270)
                     /gene="qoxC"
                     /locus_tag="IBJ56_002379"
     CDS             complement(1659..2270)
                     /gene="qoxC"
                     /locus_tag="IBJ56_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit III"
                     /protein_id="HAM3418625.1"
                     /translation="MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATY
                     FVMRKAGSNAGHPPAEMFELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSII
                     TLILGAGFVGFELYEFAHYVTEGVTMQIGSYWSAFFVLLGTHGLHVTVGIFWISFILI
                     QIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN"
     gene            complement(2258..4237)
                     /gene="qoxB"
                     /locus_tag="IBJ56_002380"
     CDS             complement(2258..4237)
                     /gene="qoxB"
                     /locus_tag="IBJ56_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit I"
                     /protein_id="HAM3418626.1"
                     /translation="MKWNEFIVTGDPMILGAQISIVLVSIGVVALLTYTKKWKWLMKE
                     WISSVDHKKIGIMYLLAAVLMFFRGGVDALMMRTQLALPDMKFLDAQHYNEVFSTHGT
                     IMILFMAMPFIIGLMNIAVPLQIGARDVAFPFLNNLSFWTFFMGAMLFNLSFVIGGSP
                     DAGWTNYAPLATDFSAGYGINFYLLGVQIAGIGTLMTGINFFVTILRMRTKGMTLMKM
                     PMFTWSSLITSLIIIFAFPVLTVALALMSFDRLFGTAFFTLTNGGLPMMWANLFWVWG
                     HPEVYIVILPAFGIFSEIISTFSRKKLFGYPAMVAAMAVISLLSFLVWVHHFFTMGSG
                     ALVNSFFSITTMMIAIPTGIKIFNWLFTMYKGRITFTTPMLWSLAFIPNFVVGGVTGV
                     MLAMAAADYQYHNTYFLVSHFHYVLIAGTVFSCFAGLTYWYPKMVGYRLNEKIGKWFF
                     WIFVVGFNVCFFPQYFLGLDGMPRRIYTYVQGDGWTTLNFISTVGGFLMGVAFLVLCY
                     NIYYSYKNSKREVTGDPWDARTLEWATSSAVPPKYNFAVLPEWNDLDDFWNRKQKGDP
                     YVNDKNYKPIHMPSNTMVGFVMSVFFFIAGFGLVFYWYWMGIIGLVGILGCMIYRSFQ
                     NNDGYHVEVDEIKATEEHNARELATGVKEGNPWNL"
     gene            complement(4256..5362)
                     /gene="qoxA"
                     /locus_tag="IBJ56_002381"
     CDS             complement(4256..5362)
                     /gene="qoxA"
                     /locus_tag="IBJ56_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit II"
                     /protein_id="HAM3418627.1"
                     /translation="MSKVLKSLLLTALLGVTGLISGCGDLTVLNPKGPVAKGQSDLII
                     YSIIFMLVIVLTIFVLFTIMLVKYRERKDISNYEPDMHGSKKLEIFWTLIPVAIVIAL
                     AIPTVKTIYAGEEAPKVTSHKDPIVIYATSADWKWIFSYPDESIETVNYVNIPTNRPV
                     LFKLTSADTMTSFWVPQLGGQKYAMSGMTMNLYLQADEVGTYKGRNANFNGEGFADQR
                     FDVVAQSEKDFKKWAKETKASSPVITQDIYDRLLIPGSSKKKTYSGTHLAFVDVAADP
                     EYVFYAYKRFGYEMTNPHNPNTKSTISDEPMLPVRPVTVTNPQFERHDMKPQIIKNGE
                     GYHEDKHREDEMKKMEEDIQTNEFNKKESDDAGK"
BASE COUNT         1851 a         1140 c          958 g         1633 t
ORIGIN      
        1 gcaataattt caaatttttt aaattcgttt tccattttat gattttaaag ttcacaattt
       61 agccattaaa atccaaaaaa aagcctattt ttgataaaaa cccttttctc catactgata
      121 gaattagata actttttaat ttaggaggag aaaaaatgaa atcaagaaaa aaagggatta
      181 tcttggtact gtctattatt ataatttttt ccatcggttt attagtgaac aacatcatga
      241 caaataacaa agataccgct aagccaaaaa agaaaaccgt cgctgctgtt aaaaagaaaa
      301 aagaaacacc tccaaaacca aaagaaccat ttaacattga ttttacaggt gatattatgt
      361 ttgattggga tttacgcccc gttttagcag agaagggaat ggattatcct tttaataatg
      421 ttcgcgagga attgaaatca agcgactata catttgttga tttagaaaca gctattacaa
      481 ctcgaacaaa aaaagtcccc taccaagaat tttggattaa aagtgatcct agttctttaa
      541 cagctcttaa aaatgcaggg gttgatatgg ttaatattag taataaccac attttagact
      601 attacgaaga tggattactc gacacaacgg ctgctttacg cgccaataac ctagcctatg
      661 ttggcgccgg taaaaatgaa gatgaagcct atcaacttaa agttgctgac atcaaaggta
      721 ataaagttgg attcatgtcg ttttgccact ttttcccaaa tactggttgg attgccgatg
      781 aagatactcc tggggttact aatggttatg atataaattt agtcgaagaa aaaatcaaag
      841 aagaacgcgc aaaaaataaa gatattgatt atatggtcgt ctattttcac tggggagttg
      901 aaaagacgaa tacacctgta gattatcaaa cccaatacgt taaaaaactc gtggatgatc
      961 atttagttga cgcgattgtt gctagccatc cacactggct ccaaagtttt gaagtataca
     1021 aagatgttcc aattgcttat tcattaggta atttcttgtt tcctgactat gtttctggtc
     1081 attcagcaga aacaggtatt tataaactga attttaatca aggtaaagtg actgcgcatt
     1141 ttgatcctgg tattatttca ggtaatcaaa ttaatatgct tgacggttct gccaagacag
     1201 cacaattaaa ttatctccaa tccatttctc caaatgcaac tattaatagt aatggtgata
     1261 tatccgcaaa ataaaaaaag ctgatgctag ttcggtttta accgttctaa gcatcagctt
     1321 ttttttataa caaatgattc atatggccaa tttccattac ccaataagaa ccaataacta
     1381 cgacaatcgc gataaatgcg gcgaataaaa tattaccgat ttgaatttta ccatcgcggc
     1441 cttctgtcat gtgcatgaac atcagaagct gtaaggctgc ctgaatgaac gcaaagatga
     1501 aaataataac taccttaaca tttgttgtta gcgtcgaata aagagccacc cagactgcta
     1561 gaagcgtcaa aataactgat aacgcaaagc caacaatatg tttccaagga atgccacctt
     1621 cagcatgagc tgcatttgat ttattatttt gtgtcatatt agttcaccat ccctagcaaa
     1681 tagacaccgg tgaaaatgaa aatccacaca acatccaaga aatgccagta taaactggaa
     1741 ataaatactt ttgatgctgt ttttggcgtc aaaccatgca ttttaatttg aatcagaata
     1801 aaactaatcc agaaaatccc gaccgttacg tgaagtccat gtgttcctag tagaacgaag
     1861 aatgccgacc agtaagaacc gatttgcatt gtaacgcctt ctgtcacata gtgtgcaaat
     1921 tcataaagct caaagccaac aaatcccgca ccaagaatta atgtgataat cgagtaaatc
     1981 gtcaacattt tcacattgcc cttacgcatc tcaccaattg ctaaaccaca cgtaaaacta
     2041 cttgttaaaa gtaaaaatgt cattattagc actagccaaa gttcgaacat ttctgctggc
     2101 ggatgacccg cattcgagcc agcctttctc ataacaaagt aagtcgcaaa aagcgttgca
     2161 aacaatgcaa tttcggcgcc aaggaaaatc cagaatccaa gaatatttaa tcgaccttgt
     2221 tctgatctat attcaattgg cagattttta tttgtttcta cagattccat gggttaccct
     2281 ccttcacacc agtcgcaagt tcgcgcgcat tatgttcttc tgttgcttta atttcgtcca
     2341 cttcaacgtg gtaaccatcg ttattttgga atgaacgata aatcatacat cctaaaatac
     2401 caactaggcc aataattccc atccagtacc agtagaagac tagtccgaaa cctgcaatga
     2461 agaagaagac agacattaca aacccaacca tggtattact tggcatatgg attggtttat
     2521 aatttttatc atttacatat ggatcgcctt tttgttttct attccagaaa tcatccaagt
     2581 cattccattc aggtaaaaca gcaaagttat attttggagg aacagcggaa cttgtagccc
     2641 attcaagcgt acgagcatcc cacgggtcac cagtaacttc acgtttagag tttttgtagc
     2701 tgtagtagat gttgtagcaa agaactaaga atgctacacc catcaagaat ccgcccacag
     2761 tagagataaa gttaagcgtt gtccagccat caccttgtac gtaagtgtaa atacgacgcg
     2821 gcataccatc tagtcctagg aaatattgcg ggaagaaaca aacgttaaat ccaacaacga
     2881 aaatccagaa gaaccattta ccaatttttt catttagtct gtaaccgacc atttttggat
     2941 accagtatgt aagcccggca aagcaggaga acacagttcc agcaattaat acgtagtgga
     3001 aatgggatac taagaagtac gtattgtgat attgataatc ggctgcagcc atcgcaagca
     3061 taaccccagt taccccacca acaacaaagt tagggataaa ggcaagcgac caaagcattg
     3121 gcgttgtaaa ggttattcgc cctttgtaca tcgtaaagag ccagttgaat atcttaatcc
     3181 cggtcggtat cgcaatcatc atcgttgtaa tggagaagaa ggagttaaca agcgcccctg
     3241 atcccattgt aaagaagtga tggacccaaa ctaggaaact tagtaaagaa ataactgcca
     3301 tcgcggcaac catcgccgga taaccgaata attttttcct cgagaaagta gaaataatct
     3361 ctgagaaaat accgaaagct ggcaaaataa caatatatac ttccggatga ccccaaaccc
     3421 agaacaagtt ggcccacatc attgggagcc cgccattcgt gagtgtgaag aatgctgtcc
     3481 caaacagtcg gtcaaatgac atcaaagcaa gtgccactgt taaaactggg aaagcgaaaa
     3541 taatgatcaa acttgtaatt aatgaagacc aagtaaacat tggcattttc attaacgtca
     3601 taccttttgt acgcattctt aaaatcgtga cgaaaaagtt aatccccgtc atcagcgtac
     3661 caataccagc gatttgaaca cctagaagat agaagttaat tccatatcca gcgctaaaat
     3721 ctgtcgcaag tggcgcatag tttgtccaac cagcatctgg cgaaccacca attacgaatg
     3781 ataagttaaa tagcatcgct cccataaaga acgtccaaaa acttaagttg tttaaaaatg
     3841 gaaatgctac atcacgcgca ccaatttgaa gtggtacggc aatgttcatc aacccgatga
     3901 taaacggcat cgccataaat aaaatcataa tcgttccatg tgtagaaaaa acttcattgt
     3961 aatgctgtgc gtctaaaaat ttcatatccg gtaaagcgag ctgggtacgc atcattagcg
     4021 catccacacc accacggaaa aacattaaga cagcagcaag caagtacata ataccaattt
     4081 ttttatgatc aacggaagaa atccactctt tcatgagcca cttccatttt tttgtataag
     4141 ttagtaacgc aacaacacca atacttacaa gtacgataga aatctgcgcg cctaaaatca
     4201 ttgggtcgcc agttacgata aactcattcc atttcatgcc ttatgtcccc cctttttact
     4261 tccctgcgtc atccgattct tttttattga attcatttgt ttggatgtct tcttccattt
     4321 tcttcatttc atcttcgcgg tgtttatcct cgtggtaacc ttcgccgttt ttaataattt
     4381 gtggcttcat atcatgacgc tcaaattgcg gattagttac tgtcacagga cgaaccggaa
     4441 gcattggttc atcagaaatg gttgattttg tgtttggatt atgcggattt gtcatctcat
     4501 aaccaaaacg tttgtaggca tagaaaacat actctggatc agctgctaca tcaacaaatg
     4561 ctaaatgcgt accagaataa gtctttttct tagagcttcc aggaattaaa agacgatcat
     4621 atatgtcttg tgtaataact ggcgagcttg cttttgtttc tttcgcccat tttttgaaat
     4681 ctttttcaga ttgagctact acatcaaagc gttgatccgc aaaaccttcg ccgttgaagt
     4741 ttgcgttacg gcctttatat gtaccaactt catctgcttg taaatataaa ttcattgtca
     4801 tgccagacat cgcatatttt tgtccaccta actgcggaac ccaaaagctt gtcatcgtat
     4861 ctgcagaagt taatttgaat agtacaggac gattggttgg aatgtttaca tagttcaccg
     4921 tttcaatcga ctcatctgga taactaaaaa tccatttcca gtctgcactt gttgcgtaaa
     4981 taacaattgg atctttatgc gaagtcactt ttggtgcttc ttcccctgca taaattgttt
     5041 ttacagtcgg aatagctaga gcaataacga ttgcaactgg aatcaatgtc caaaaaattt
     5101 ccagtttttt actaccgtgc atatccggct catagtttga aatgtctttc cgttcgcggt
     5161 atttaaccaa cataatcgta aacaatacaa aaatcgtcaa aacaataacc agcataaata
     5221 taatcgaata aataattaag tccgactgac cttttgcaac tggccctttt ggattaagta
     5281 ccgtcaagtc accacaacca cttataaggc cggtaacccc aagtagtgcc gtaagcagca
     5341 aagatttaag tacctttgac acccgaatcc cctcttttcc ttttgatgtt ttctaatgtg
     5401 tatttttgcg caaaaatacc attaccggag tgctgaaaga agcttgttag aactcctatg
     5461 taactgaaaa aatgctttta ctatttagtt cttttaaaaa aactcacaaa cttttttaaa
     5521 aattaatcag catttttaga atcactatgt tcatactcta actcattata tctgatttga
     5581 ta
//
LOCUS       DABQVC010000180         5471 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.180,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000180 DABQVC010000000
VERSION     DABQVC010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5471
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.180"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(27..1031)
                     /locus_tag="IBJ56_002382"
     CDS             complement(27..1031)
                     /locus_tag="IBJ56_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside transferase"
                     /protein_id="HAM3418628.1"
                     /translation="MKRFILIFILIILIGAGFFIFLRPEPKKTVSAPKETTPTSTSVQ
                     TYVKENYTAKNGLIVDYKNAQEPHYLAESIGLYMEYLVEVNDSKTFQEQVSHLEKNFI
                     TEDNFIKWEATNATTTNAIVDDFRITEALYQASEKFSFPSYKKMADKILANTKKYSAE
                     QGVPVDFYDFVHKKKADTLHLSYLNIQAMQQINYRDKAYLPIQTVNADPFFTEVFQNE
                     QFQYADPSEVNMIDQMLIAMAYFDENGDVEPNFDNFLQTELASKGKVYARYQRETKKP
                     SSENESTAVYAFLTQYFNKTNQAKNGKITKELLEKMDTSNPETTHFFDYINKEITLKK
                     "
     gene            complement(1028..2155)
                     /locus_tag="IBJ56_002383"
     CDS             complement(1028..2155)
                     /locus_tag="IBJ56_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAM3418629.1"
                     /translation="MFELVNSYIDSLALFLAILFIQGMSFRKIRQYRPNWFQNGGRRL
                     FLSILLGVYYGLAGIYFIYEGAYENNPVIYTNMRILILMVTSVFGGRVPLIFAYLVML
                     FGRISFDIASPVTSRYVILMTLIFAVCLLVTFWKKQRFSRFVALIILNFPAILYYFVN
                     NFDEGRILQGFEIIEYFLLFFVTALLVFYACNYIDKSNLVIQNLTETAMTDSLTNLPN
                     MRFFTQQFGWIFAKSQKRKKSLSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNR
                     TFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERAKFPYNPASGKVTVSIG
                     VASASSNFSTTESLFEAADQALYQAKQNGRNQIAVHQGELE"
     gene            complement(2181..3317)
                     /locus_tag="IBJ56_002384"
     CDS             complement(2181..3317)
                     /locus_tag="IBJ56_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAM3418630.1"
                     /translation="MPNILDSLWNSMALFLSALFFHGMALRSIREKKPAWFQIKFSNE
                     IINYALGIYYGLLGVYFIIRGLPGTDSGIYTDMLLNILIVLHLFSSAGPATIALLLIV
                     AGKLFLGDALFANLIYAFLIIGFHFVCMEVAKLRLSSVQKVVLVKLSAIPLMLFYLHQ
                     KIHLLYTINDLPVWILYFLVSFFITFIIVSAAYYIDTSNKLIYDLQQSTILDPLTGLT
                     NFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGNGVLSTFSQMLLK
                     ISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIVASGSVITISA
                     GIANYDGRNYPNPNELLNAADQALYNAKRNGRNQVHIRETEPVV"
     gene            3637..4743
                     /locus_tag="IBJ56_002385"
     CDS             3637..4743
                     /locus_tag="IBJ56_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HAM3418631.1"
                     /translation="MQKIVIIGGGIVGASAAYLLSKENVQVTLIDSDEPGQATRAAAG
                     IICPWLSKRRNKYWYELAKNSAAFYKELAGTLEGDTGRNSGYKQVGVLALRKTEEKVT
                     ELFNLANERRLDAEVMGEIVKLSEEETKQKFPLVKPGFGSVYVSGAARVNGSLFCERL
                     LYAAKENGVKIKSGRAHFSTDGKVRVDGEDEHYDKLIIAAGAWLKELLDEASFHTEIL
                     AQKGQLLELDFSEFQTDEWPVILPPSAKSIVPFDNGKIIVGATHEKTAGFDTKPTAEG
                     KAEILTEVSQFMEGDLASKVAHVAVGTRPYTPDFAPLIGQLPGFESVFLANGLGASGL
                     TTGPYVGKLLADLALGNTVDLALENYEPSKYISR"
     gene            complement(4733..>5471)
                     /locus_tag="IBJ56_002386"
     CDS             complement(4733..>5471)
                     /locus_tag="IBJ56_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HAM3418632.1"
                     /translation="FLLHFFQIDPAYSNLILNIPLFILGWRVLGNRSLIYTGIGTVSL
                     SLFLWIFQRIPYTLDLHSDLLLVALFAGGFSGIGLGLVFRYGGTTGGSDIIAKLLNHT
                     KGISMGRTLFAIDAIVLVASLSYLDVRQVMYTLVAVFIGSRVIDFVQEGAYAARGALI
                     ISKDNDAIASHVMLAMNRGVTVLEGRGGFSKKDQDVLYIVVAKNEIIQLKNIVQAIDP
                     HAFVSVSVVHDVMGEGFTLDENKNPIY"
BASE COUNT         1797 a          984 c         1104 g         1586 t
ORIGIN      
        1 tttttcattt gtccaacttc tttccgttat ttcttaagag ttatttcttt atttatataa
       61 tcgaaaaaat gggttgtttc tggatttgac gtgtccattt tctctaataa ctctttggtg
      121 attttaccat ttttagcttg atttgtcttg ttaaaatact gtgtcaaaaa ggcataaacg
      181 gcggtggatt cgttttctga acttggtttc tttgtttctc tttgataacg tgcataaact
      241 tttcctttag aagctaattc tgtttgtaaa aaattatcga aatttggctc tacatcacca
      301 ttttcatcaa aataagccat cgcaatgagc atttgatcaa tcatattaac ttcactaggg
      361 tcagcatatt gaaactgttc attttgaaac acttctgtaa aaaatgggtc agcattaaca
      421 gtttgaattg gtagataggc tttatctcga taattaatct gttgcatcgc ttggatattt
      481 agatagctta aatggagcgt atctgctttt ttcttatgaa caaaatcgta aaagtctact
      541 ggaacacctt gttcagcgct atattttttg gtgttggcta ggattttatc tgccattttt
      601 ttgtaggacg ggaaactaaa tttttcgctc gcttgataaa gtgcttctgt aatacggaaa
      661 tcatctacaa tcgcattagt cgttgttgcg ttggttgctt cccatttaat aaagttatct
      721 tcggttataa aattcttttc taaatgactt acttgttctt ggaaagtttt actatcattc
      781 acttcgacca aatattccat ataaagtccg atgctctcgg ctaaataatg cggttcttgc
      841 gcatttttgt aatccacaat taaaccgttt tttgcagtat agttttcttt tacatacgtt
      901 tgaacagagg tggaagtggg tgtggtttct tttggtgcac tcaccgtttt tttaggttct
      961 ggtcgaagga aaatgaaaaa tccggcgcca ataaggataa ttaaaatgaa aattaagatg
     1021 aatcgtttca ttcgagttcc ccctgatgaa cagcaatttg attgcggccg ttttgttttg
     1081 cttgatagag cgcttggtca gcagcttcga aaagtgattc ggttgttgaa aagttggaac
     1141 tagcagaagc aacacctata gatacagtaa ctttgccact tgcgggatta taaggaaact
     1201 tcgctcgttc cacttcttca cggaaaaaat cagcaattag agcagcttgc tctgtaccaa
     1261 cgttttgaag taaaacagca aattcttcgc caccaattcg tgcaaacatg gttcttggcg
     1321 ggaaggtgcg atttttaaga atgctactaa actgagcaag aacggtatta ccagcttgat
     1381 gaccatgaaa atcgtttatt tctttaaaat gatcaatatc aatgatgaaa agagataaag
     1441 attttttcct tttttgcgat ttcgcaaaaa tccaaccaaa ctgttgggtg aaaaagcgca
     1501 tgtttggtaa attagttaaa ctatccgtca tcgcagtttc cgtcaaattt tggataacga
     1561 gattactttt atcaatgtaa ttgcaggcgt aaaataccag taaggcggtt acaaagaata
     1621 gcaggaaata ctcgataatc tcaaaacctt gcaggattcg tccttcgtca aaattattca
     1681 cgaaataata aagaatcgct gggaagttta aaatgattaa agcaacaaat ctcgaaaagc
     1741 gttgtttttt ccaaaaagta acaagtaaac acacggcaaa aatgagcgtc atcaaaatga
     1801 catagcgact agtaacagga gaagcaatat caaaactaat ccgaccaaaa agcattacta
     1861 aataggcgaa aatgagtgga acgcggccac cgaaaacact tgttaccatc aaaatcaaaa
     1921 tccgcatatt cgtgtaaata acgggattat tttcgtaagc accttcataa ataaaataaa
     1981 tacctgctaa accatagtag acgcctagta ggatggaaag aaatagccgt ctaccaccat
     2041 tttggaacca atttgggcga tattgtctta tttttcgaaa agacatccct tggataaaaa
     2101 ggatagcgag aaagagcgct aaactatcta tgtatgaatt aactagttcg aacaaatgga
     2161 ctcatctcct ttttactctc ttaaacaact ggttctgttt cgcgaatatg cacttggttt
     2221 cgtccatttc gtttcgcatt atatagcgct tgatcggctg catttagtag ctcgttcgga
     2281 tttggataat ttctgccgtc ataatttgcg ataccagcag aaatagtaat aacggagcca
     2341 gaagcaacaa tcggaacatc aattttttcg actttacgtc ggattttctc cgccaaatgc
     2401 tccgtttcac tgacattaat atttggcaaa ataatggcga attcctcgcc gccaatcctt
     2461 gatatcactg tgtttggcgg gaagctgatt tttaatagca tttgactaaa agtagataaa
     2521 accccatttc cgactaaatg gccatatgta tcatttaccc gtttaaaata atcaatatca
     2581 ataataatca cacttagatt cgattttttt aacgtagcat ggttaaatgc tgcttcgaac
     2641 gccttttcaa aatgacggaa attcgtcaaa cctgttagcg gatcaaggat ggtggattgc
     2701 tgcaaatcat aaattagctt attcgatgta tcgatataat aagccgctga aacaataata
     2761 aacgtaataa aaaaagaaac caaaaaatag agtatccaaa caggtaagtc atttatggta
     2821 tacaataaat gtattttttg atgtaaataa aatagcataa ggggaatcgc actaagtttg
     2881 actaaaacga ctttttgaac ggaactaagt cgaagtttag cgacttccat gcatacaaag
     2941 tgaaaaccga taattaaaaa cgcgtaaatc aaattggcaa acagcgcatc accgagaaaa
     3001 agttttcctg cgacaattag taatagcgcg atagtagcag gacctgccga agaaaataaa
     3061 tgcaggacga ttaaaatatt aagtagcata tctgtataaa tcccagaatc tgtgccgggt
     3121 aatccgcgga taataaaata aacacctaga aggccgtagt aaatgcccag tgcataatta
     3181 ataatttcat tagaaaattt aatttggaac caagcaggct ttttttctct aatagatcgc
     3241 agtgccattc cgtgaaaaaa aagcgctgat aaaaaaagcg ccatgctgtt ccataatgaa
     3301 tcaagaatat ttggcataaa aaaatctccc atatctcagc ataactaatc agctgaactg
     3361 ttaatatagg cagaaggaaa aataaatgaa tttttagctg agacgcagta caaagaacca
     3421 accaatgggc gaaagcgttc tctaagagga tatgtggtaa tgacgacgag ataagctaaa
     3481 atctgccttt ttgtaattaa agctggattt cagtacaatg gatagaatga tgtagaggat
     3541 ttttagtagt ttgtaaactt aactattttc acatattatt acaaagagtt ataaaaaagt
     3601 caacttgtgt cacaattgat atagaggggt gtaacgatgc aaaaaatagt gattatcggc
     3661 gggggaattg ttggagctag tgccgcctat ttattgtcaa aagaaaacgt gcaagtaacg
     3721 ctaattgatt cagatgaacc gggacaagca acgcgtgctg cagccggaat aatttgcccg
     3781 tggctttcta aaaggcgaaa caaatattgg tatgagcttg caaaaaatag tgccgccttt
     3841 tataaggaat tggcggggac gctcgaagga gatactgggc ggaattcggg ctataaacaa
     3901 gttggtgtgc tcgcacttcg aaagacagaa gaaaaagtaa cagaactgtt taatcttgcg
     3961 aatgaacgac gcctcgatgc ggaagttatg ggtgaaattg taaagttgtc agaagaggaa
     4021 acaaagcaaa aatttccgtt agttaaaccg ggatttggct cggtctatgt aagcggagca
     4081 gcacgagtga acggtagttt attttgtgaa aggctacttt atgccgcaaa agaaaatggg
     4141 gtaaaaatca aatcggggcg agcgcatttt tctactgacg gaaaagttcg tgttgacggg
     4201 gaagatgaac attacgacaa attaatcatt gcagcaggcg catggttaaa agaattgcta
     4261 gacgaggcga gttttcatac agaaatttta gcgcaaaaag ggcaattgct ggaacttgat
     4321 tttagcgaat ttcaaacgga tgaatggcca gtaattttac caccgagcgc gaaatcaatt
     4381 gttccttttg ataatgggaa aattatcgtc ggtgcaacgc atgaaaaaac tgctggcttc
     4441 gatacgaaac caacagcaga aggtaaggca gaaatactaa cagaagtcag ccagtttatg
     4501 gaaggggatt tagcgagtaa agtggcccat gtggcggtcg gaactagacc atacacgcct
     4561 gattttgcgc cacttattgg tcaacttcct ggatttgagt cagtcttttt agcgaatggt
     4621 cttggtgctt ctggtttaac taccgggcct tatgttggca aacttttagc ggatttagca
     4681 cttggaaaca ccgtcgattt ggctttagaa aactatgagc caagtaaata cattagtaga
     4741 taggattctt gttttcatcg agtgtgaaac cttctcccat cacatcatga acgacactga
     4801 cggaaacaaa ggcatgtggg tcaattgctt gaacaatatt ttttaattga attatttcat
     4861 ttttcgcaac gacgatataa aggacgtctt ggtctttttt agagaagcca ccgcgacctt
     4921 ccaacactgt caccccgcga ttcatcgcga gcatcacatg ggaagcaatc gcgtcattat
     4981 ctttagaaat aatgagcgca ccgcgagccg cataagctcc ttcttgaaca aaatcaatta
     5041 cgcgagagcc gatgaatacg gcgacgagcg tgtacataac ttgacggaca tctaaatagg
     5101 agagtgaggc aacgagaaca attgcatcaa tagcaaatag cgtgcgcccc atgctaatgc
     5161 ctttcgtatg atttagcagt ttggcgataa tatcactacc accagtcgtc ccaccatagc
     5221 gaaacacgag gccaagccca ataccactaa agccaccagc aaaaagggcg actaaaagta
     5281 aatcgctatg taaatctagc gtataaggta ttcgctggaa aatccataaa aataaggaca
     5341 aactcaccgt tccgataccc gtataaatga gggaacgatt gcctagaact cgccaaccta
     5401 atataaacaa aggtatattt aaaattaagt tagagtacgc tggatcaatt tggaagaagt
     5461 gaagaaggaa t
//
LOCUS       DABQVC010000181         5427 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.181,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000181 DABQVC010000000
VERSION     DABQVC010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5427
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.181"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            21..1061
                     /locus_tag="IBJ56_002387"
     CDS             21..1061
                     /locus_tag="IBJ56_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HAM3418633.1"
                     /translation="MSKNQATAYIGTYTKAESQGIYRLVIDKTTGEIKENKLAGKMDN
                     PTYLKISDDEKFVYSVAKDGDKGGVAAFSVEEDGSLTFINQDVQTGNPPCYVDASHDG
                     SIVVSANYHLGTIVSYPTENGALKSSVSTIQHTGKSVHERQEKPHAHFAGFTPDQKYV
                     ITCDLGTDKVTTYSATAGKLEKVTELDVKPGSGPRNLVFHPNAKYVYIMTELTSEVIF
                     AEYDEATGALNVIQTIASLPEGFDKENKGSAIHISPDGRFLYVSNRGQDAIVSYAVAE
                     NGTLTLAATTPVEGVGPRDFDLSYTGEILVATNENSNNVTVFGVNKETGALTLLQKDV
                     KVPEPVCIKFVK"
     gene            complement(1103..1798)
                     /locus_tag="IBJ56_002388"
     CDS             complement(1103..1798)
                     /locus_tag="IBJ56_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HAM3418634.1"
                     /translation="MATGKLNVYLVRHGKTMFNTSRRVQGWSDTPLTNEGIEVAEFLG
                     RGLRETPFDAIYTSDRGRTIETAGIILRESKQTHLEINELRDFREFGFGKFEGEYEDI
                     MFGKVMEHLGFQSMEEAFEKFGDDGYQIISETVEKIDETGMSENWDEMVARLKNALDT
                     VSAENQVENANVLVVSHGMAINTIISFFDKSLINPDLANASVTRLGFENGEWTIETVN
                     DLSYIEAGKLVLV"
     gene            complement(1799..2506)
                     /locus_tag="IBJ56_002389"
     CDS             complement(1799..2506)
                     /locus_tag="IBJ56_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HAM3418635.1"
                     /translation="MESSSRVVIYLTRHGKTILNTLDRVQGWADSPLTEEGALVAHDL
                     GRGLKGTNFVAAYASDRGRAIETARIVMKESDNHHLKLEKLAEMREFGFGKFEGEYNQ
                     AVLKMVAKAHGFESIESYYDKTSENNSNIVIDTVHKMDETGMTENSVIFEERLTAGLD
                     TILADANKRGGGDVLVVAHGMVIHRIIEMIDPSKNLRIIENASVTKVIFEDGAYSIEE
                     PGNMFYVEVGKKAQGGV"
     gene            complement(2635..4113)
                     /locus_tag="IBJ56_002390"
     CDS             complement(2635..4113)
                     /locus_tag="IBJ56_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HAM3418636.1"
                     /translation="MSTKKEKTFFGHPRGLATLFNTEFWERFSYYGMRALLLYYMYTA
                     VADGGLGFSQSTATAIMSIYGSLVFMSGVIGGWFADRVLGARQTIFYGGVLIMVGHIV
                     LALPNGGAAALFGSMAFIILGTGLLKPNVSNVVGDLYPAGDNRRDAGFSIFYMGINLG
                     AFIAPPIVSAVSDNAGSFHAGFGVAAVGMAIALVVYVLTGKRYLKDAGKKAPNPLQRS
                     EAKSLTFKIIGIVLGIGLLIAVLTLITGSLTIDTIILAVTVMGVGVPLAYFIMMMTSK
                     KTEADEKSRLTAYIPLFLIAVLFWMIEEQGSSTLALFAAERTDLSIWGMNLNPANFQS
                     LNPVFVITLSPIFAWIWTKLGDRQPSTPRKFALGLFFAGLSFVVMMLPGILHGNTTTL
                     VSPLWLVLSFFICIFGEMFISPVGLSATTKLAPKAFASQTMSLWFLSDAMGQSFNAQL
                     TQLFNADTEIAYFGITGFVAIAFAVALFIFAPFLKKYMKGVH"
     gene            complement(4203..5384)
                     /locus_tag="IBJ56_002391"
     CDS             complement(4203..5384)
                     /locus_tag="IBJ56_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HAM3418637.1"
                     /translation="MQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQDKKVLILYGGGS
                     VERFGTLDKVKTALKSREVGEFGGIEANPTYETLIKAIQLVKEENYDFLLAVGGGSVI
                     DGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFV
                     EKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQ
                     DRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGVPQDWASHSLG
                     HEITALYGIDHARTLAIVLPSLLNVRRSEKHEKLVQYAERVWGIKSGSDEEKIDAAIL
                     KTREFFESLGAGTRFSDYGLGEEVVDLLVDQLERHGLTNISERGDQTLEVSRQIYTNA
                     L"
BASE COUNT         1701 a         1211 c          902 g         1613 t
ORIGIN      
        1 tatatatagg aggaattggc atgtcaaaaa atcaagcaac tgcttatatc ggtacatata
       61 ccaaagccga gagccaaggt atctatcgct tagtaatcga caaaactacc ggcgaaatca
      121 aagaaaataa attagctggg aaaatggaca atccaacata tcttaaaatt tcagatgacg
      181 aaaaattcgt ttattctgta gcaaaagatg gcgataaagg tggggttgca gctttttctg
      241 tggaagaaga cggttcgctt actttcatta atcaagatgt tcaaacaggt aacccaccat
      301 gttacgtaga tgcctctcat gacggttcta tcgttgtatc tgcaaactat cacttaggca
      361 caatcgtaag ctatccaaca gaaaacggtg cattaaagtc ttctgtctct accattcaac
      421 atactggtaa aagtgttcac gaacgccaag aaaaaccaca cgcgcacttt gcaggattca
      481 caccagacca aaaatacgtt atcacatgtg accttggaac agacaaagta acgacttatt
      541 ccgctactgc tggcaaactt gaaaaagtaa ctgagctaga cgtaaaacct ggaagcggtc
      601 ctcgtaacct agtcttccat ccaaatgcta aatatgtgta catcatgaca gaattaactt
      661 ccgaagttat ttttgctgaa tatgatgaag ctactggcgc attaaacgtg attcaaacaa
      721 tcgcttctct tccagaaggt tttgacaaag aaaataaagg tagcgctatc catatttctc
      781 ctgatggtcg tttcctatat gtgtcaaatc gtggccaaga tgccatcgtt agttatgcag
      841 ttgccgaaaa cggcacacta acacttgcag caacaacacc agtagaaggc gtaggtccac
      901 gtgacttcga cctgagctac actggcgaaa tcttagttgc aacaaacgaa aacagcaata
      961 acgttactgt ttttggtgtt aacaaagaaa ctggtgcact tacattactt caaaaagatg
     1021 taaaagttcc tgaaccagtt tgtattaaat tcgtaaaata acttaaaaaa tccagaatgg
     1081 cctcagtgcc attctggatt ttttatacta aaactaattt acctgcttca atgtaactta
     1141 aatcattcac tgtctcaatt gtccattcgc cattttcaaa tccaagtctt gtaacacttg
     1201 cattagctaa gtctggatta attaatgact tatcaaagaa agaaataatc gtattaatag
     1261 ccattccgtg agaaacaact aaaacgttgg cattttccac ctgattttct gcactaactg
     1321 tatctaaagc attttttaat ctagcaacca tctcatccca attctcggac ataccagttt
     1381 catcaatttt ttctacagtt tccgagataa tttgataacc atcatcgcca aatttttcaa
     1441 aagcttcttc catcgactgg aaaccaagat gctccatcac ttttccaaac ataatatctt
     1501 catactcacc ttcaaattta ccaaaaccaa actcacggaa atcacgtagt tcattgattt
     1561 ccaaatgcgt ctgcttgctt tcacgtaaaa tgatgcctgc cgtttcaatt gttcgaccac
     1621 gatcactcgt ataaatagca tcaaagggag tttcacgaag gccacgacct aaaaattctg
     1681 ccacttcgat tccttcattt gttaatggtg tatctgacca gccttgcaca cgacgagatg
     1741 tattgaacat cgttttgcca tgcctaacta agtacacatt cagttttcct gttgccactt
     1801 aaactccccc ttgcgccttt tttccaactt ctacataaaa catgtttcca ggttcttcaa
     1861 tcgaatatgc tccatcttca aaaataactt ttgtcacact ggcattttca ataattcgta
     1921 aatttttact aggatcaatc atttcaataa tgcgatgaat aaccataccg tgcgctacta
     1981 ctaacacatc tccaccacca cgcttattag catcggcaag aatagtatcg agtcccgcag
     2041 ttagtctttc ttcaaaaata accgagtttt ccgtcattcc agtctcgtcc attttgtgca
     2101 ccgtatcaat gacaatattg gaattatttt cagaagtttt atcataatag ctttcaatag
     2161 attcaaaacc atgcgccttt gctaccattt ttaaaacagc ttgattatat tctccttcaa
     2221 atttgccaaa gccaaattca cgcatttcag ctaatttttc tagttttaaa tgatggttat
     2281 cgctttcttt catgacaatt cgtgcagttt cgatggcacg tcctcggtca cttgcgtaag
     2341 cggctacaaa attagtccct tttaaaccac gacctaaatc atgcgcaaca agtgctcctt
     2401 cttcggttaa cggcgagtca gcccagcctt gtacccgatc aagtgtgttt aaaatcgtct
     2461 ttccatgtcg cgttaaataa ataactaccc tgcttgatga ttccatgtat acactccttt
     2521 aaattatcac ttctcccttt aatagtagca atcttaggag ttaatggcaa actaatttat
     2581 tcctagcata aaaaaacact tcctccaaat aaggagaaag tgcgcttaat tcctttaatg
     2641 aacgcccttc atatattttt tcaagaatgg cgcgaaaatg aataatgcta ccgcaaaagc
     2701 aattgctaca aaaccagtaa taccgaaata agcaatttca gtgtcagcat taaataattg
     2761 tgttaattgt gcgttaaatg attgccccat tgcatctgac aagaaccata agctcatcgt
     2821 ttgtgaagca aaagcttttg gcgctagttt ggtcgtcgca gataatccga ctggtgagat
     2881 aaacatttca ccgaaaatac agatgaagaa acttagtact aaccaaagtg gacttacaag
     2941 cgttgttgtg tttccgtgca agatacccgg aagcatcata acaacgaaag ataaaccagc
     3001 gaagaatagt ccaagggcaa atttacgtgg tgtagatggt tgtctatcac caagtttcgt
     3061 ccaaatccat gcgaaaattg gcgaaagtgt aataacaaac actgggttaa gcgactggaa
     3121 attggccgga tttaagttca taccccaaat agataaatcc gttctttctg ccgcgaaaag
     3181 cgccaatgtg gacgagcctt gttcttcaat catccaaaat agtacagcaa ttaaaaataa
     3241 cggtatgtat gcagttaatc gtgatttttc gtccgcctcg gttttcttgc tagtcatcat
     3301 cataataaag taagcgagtg gaacccccac gcccatcacc gttacagcaa ggataatcgt
     3361 atcaattgtt aagctacctg taattagtgt taaaacagca attaataatc ctatgcctaa
     3421 aacaatgcca attattttga atgtaagact ttttgcttct gatctttgaa gcggatttgg
     3481 cgcttttttg ccagcgtctt ttaagtaacg ttttcctgta agaacataaa caacaagtgc
     3541 aattgccata ccaacagctg ccacaccaaa accagcatgg aaacttccag cattatcaga
     3601 aactgccgaa acaataggcg gggcaataaa tgcacctaag ttaatcccca tgtagaagat
     3661 actaaaacca gcatcacgac gattatcgcc agctgggtat aaatcgccaa cgacattaga
     3721 aacattcggt ttaagtagcc cagttccgag aattataaat gccatcgaac caaataatgc
     3781 cgctgctcct ccatttggta aagctagtac aatatgcccc accataataa ggactccacc
     3841 gtaaaaaatg gtctgtcgtg cccccaagac acggtcagcg aaccatccac caatgactcc
     3901 tgacataaat actagtgaac cataaataga cataattgct gttgcggtag actggctaaa
     3961 cccaagtcca ccatctgcta ctgcagtata catataataa agtaataatg cacgcattcc
     4021 gtaataggag aatcgctccc aaaattcggt gttaaataat gtagctaggc cgcgcggatg
     4081 gccgaaaaac gtcttttcct tcttggtact caagaaattt cgccctcttt cattttctat
     4141 tgatttttat ttaagtaagc aaatttcttc tctaatgatt tgcgcaaaag tttcgttatc
     4201 cattataaag catttgtata aatttgacga gatacttcta acgtttggtc gccgcgttct
     4261 gaaatattcg ttaaaccgtg acgctctaat tgatcaacga gtaagtccac tacttcctcg
     4321 ccaagcccat aatcactaaa tctagttcct gctcctaagc tttcaaagaa ctcgcgtgtt
     4381 ttgagaatag cagcgtctat tttttcttca tcactaccac tcttaatccc ccacactcgt
     4441 tccgcatatt gcactaattt ctcatgcttt tcactgcgac gaacatttaa aagagacggg
     4501 agaactattg ctaacgtacg tgcatggtca atcccataaa gtgcggtgat ttcgtgacct
     4561 aaactgtggc ttgcccaatc ttgcggaacg cctctggata atgttccatt gagtgcattt
     4621 gtagctgacc acataaaagt agcacgtgta ttataatcat gattatcttc tttgataaca
     4681 tctggaccaa tttcgattaa agtttgtagt agactttcgg cataacgatc ttgcagcaaa
     4741 gcacctactg gataagtcat atattgttcc attacatgca catacgcgtc cataatacca
     4801 tttgcaagtt gacgttttgg aagtgtgtat gtaagttctg gatcaagtaa agaaaaaaca
     4861 ggataagtat aagcactacc aaagccaagt ttcgctttct tctccacaaa agtgattaca
     4921 ccaccgctat tcatttcaga accagttgca ggaagtgtta gtactgttcc aaaaggaagc
     4981 gcttttgtaa tcggacgttt ttcgccaatt ccgctaccaa aaatatccat cggttcaccg
     5041 tcgaacaatg ctcccgctgc aacgaatttt gttccgtcaa tcactgaccc tccaccgact
     5101 gcaagtaaaa agtcatagtt ttcttcttta actagttgga tagctttaat taacgtttcg
     5161 tatgtaggat tcgcttcaat gccaccaaat tcgcctactt cgcgtgattt aagagcggtt
     5221 tttactttat ctaaagttcc aaaacgttct acacttccac caccatacaa aatcaatact
     5281 tttttatctt gaggaatcac ttcatttaat tcattaaaac ggtttttacc aaaaataata
     5341 tgcgtagggt tataataatc aaagttcaac atttcttttt gcatgttaac gtccttcttt
     5401 ctgtttataa atttacatag catagtt
//
LOCUS       DABQVC010000182         5403 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.182,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000182 DABQVC010000000
VERSION     DABQVC010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5403
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.182"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(103..1092)
                     /locus_tag="IBJ56_002392"
     CDS             complement(103..1092)
                     /locus_tag="IBJ56_002392"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HAM3418638.1"
                     /translation="MIYLDNEDVLDQAYNFAMEEYALRSLDENETYFMFYRMKPTIIV
                     GKNQNTLEEINHAFVKEHHIDVLRRLSGGGAVYNDEGNISFSMITKDDGNSFQNFAKF
                     TEPVIRALRKLGVNAELSGRNDIEVNGKKISGNAQFATKGRLYSHGTLLFDVDLSMLE
                     KALQVDPEKYLSKGVKSVRSRVTTIREHLAEDIDILTFKQILLESIFETKDIPRYTFT
                     EADKQGIEKLRTERYRNWDWTYGKSPKATIKRKKRFPAGTIEFQVSLEKGQVKEATIY
                     GDFFGTEDVAELAGKIIGCRFEREEVEKAWSAIDTKAYFGGIEKEAILAMLFE"
     gene            complement(1098..1970)
                     /locus_tag="IBJ56_002393"
     CDS             complement(1098..1970)
                     /locus_tag="IBJ56_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HAM3418639.1"
                     /translation="MKKTGWGILGAVAAFTGYAYWSTKHLTVTDYEIVSDKIPAEWDG
                     ATFVQLSDLHSASFGLYNNPLLSIVNELAPDAVFLTGDMIDGDESPYVAMAVVRKLAK
                     EFPVFYVSGNHEGRSAFYEDFKADMEKHHVTVLENERYFLKKDGAAIMVAGVRDPRFV
                     RDDWAEKELPKEVWEEAALKEALDDATANLSPDYFTILLAHRPEFWPLYQAYPIDLVL
                     SGHAHGGQFRLPLTEGLFAPGQGLMPKWTAGIHRAGGKALIVSRGLGNVTKLPRLFND
                     PEIIRMTLRAKGDA"
     gene            complement(2036..3292)
                     /gene="hflX"
                     /locus_tag="IBJ56_002394"
     CDS             complement(2036..3292)
                     /gene="hflX"
                     /locus_tag="IBJ56_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HAM3418640.1"
                     /translation="MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNID
                     RENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSPSQIRNLEEALELDVMDRTGLIL
                     AIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
                     RTIKYQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYS
                     ETAEKQVFEKDMLFATLETSVREIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEE
                     ARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYNKADLIEGEIYPKQT
                     ENTIVFSAREKESLEFLTEVIRKELFASYEKATFLIPFEAGNVVAYLNDHADVLATEY
                     LENGTQIVAEVSPADLQKLAEYQVAE"
     gene            complement(3620..4240)
                     /locus_tag="IBJ56_002395"
     CDS             complement(3620..4240)
                     /locus_tag="IBJ56_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HAM3418641.1"
                     /translation="MTIFKSADLSQKENYKFLTGSIIPRPIAFVTTLAEDGETVNAAP
                     FSFFNVVSSDPAIVSIAVQRANGEQKDTARNAAFTKEINIHIVSESFVEEMNKTAARL
                     APDVSEIDKTSLHLEKVPGMKTPKISEANIVLTAKLEQIIPIKNDAGEVVSDLILARI
                     LTYDFADEVFDSEHHYILPEKLEPVARLAGNDYTKLGDIFRIERPN"
     gene            complement(4250..4858)
                     /locus_tag="IBJ56_002396"
     CDS             complement(4250..4858)
                     /locus_tag="IBJ56_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3418642.1"
                     /translation="MEHIYIPGKNKDLAPLLLLHGTGGDEKSLVEVAEFIAGDAAVLS
                     LRGDIKEGGANRFFKRFHDGSLDLEDLESKTAELITTTRELAEKYQLDFERMIAVGYS
                     NGANIAANALLQAEDSFHKAILFHAMPAGNKQPEFSISHRNVFLSAGLNDPLITAKAS
                     EELVEILEKRGAKVETVWTAAGHSLTMEELEEAKKWYQNNQK"
     gene            complement(4865..>5403)
                     /locus_tag="IBJ56_002397"
     CDS             complement(4865..>5403)
                     /locus_tag="IBJ56_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HAM3418643.1"
                     /translation="GTPWKNGPVPEKYAIYGLGPVFLTVVSLKNMDAILQTIFGFRKV
                     TEEDGLHLYEVGEGGNGAQVIVEERTDIPAAIQGYGGVHHVAFRVEDHEELQKWIDRM
                     NTIEAPNSGYVNRFYFESLYVPVSERILFEFATDGPGFANDEPYETLGEKLALPPFLE
                     PKRAEIEKMVRPINTKRS"
BASE COUNT         1430 a         1226 c          958 g         1789 t
ORIGIN      
        1 agtttaacac gagttctaga tttattaaag tttgtaacct ctttttgctg tagtaacaac
       61 aaaactctaa gaaatttctt cttagagttt tttagacgtc ttttattcaa atagcatcgc
      121 taaaatcgct tctttttcaa ttccgccaaa ataggctttt gtatcaattg cactccaagc
      181 tttttcaact tcttctcgtt caaaacggca gccgattatt ttcccagcta attcagccac
      241 atcctctgta ccaaaaaagt ccccataaat ggtcgcttct tttacttgac ctttttctag
      301 tgaaacttgg aattcaatag ttccagctgg aaatcttttt ttgcgtttta tagtggcttt
      361 tggtgattta ccatacgtcc agtcccaatt ccggtaacgt tctgtgcgta atttttcgat
      421 tccttgcttg tcagcttccg taaaagtata acgtgggata tctttcgttt caaaaataga
      481 ttccagtaga atttgtttaa aggttagaat atcgatatct tccgctaaat gttcgcgaat
      541 tgttgttaca cgactgcgca cagatttaac acccttggat aagtatttct ctggatccac
      601 ttgtaatgct ttttcgagca tggataaatc gacatcgaaa agtaaagtcc catggctata
      661 tagtcgacct tttgttgcaa attgcgcatt gccacttatc tttttgccat tcacttcaat
      721 atcatttcga ccactcagtt cagcatttac accaagcttg cggagcgctc gaataactgg
      781 ttctgtgaac ttcgcgaaat tttgaaaact attcccatca tcttttgtga tcatgctaaa
      841 gctaatattg ccttcgtcgt tatagacagc tcccccacca gataaacggc ggagaacgtc
      901 gatatgatgt tctttgacaa aagcatggtt gatttcttcc agtgtgtttt gatttttacc
      961 aacaataatc gtcggcttca tccggtaaaa cataaaatac gtttcatttt catctaaaga
     1021 acgaagcgca tattcttcca tcgcaaagtt gtacgcttga tcgagtacat cttcattatc
     1081 taaataaatc acttttccta agcatcccct tttgctctaa gtgtcattcg aatgatttct
     1141 gggtcattaa ataagcgcgg tagtttcgtg acatttccta agccgcggct cacaataagc
     1201 gctttaccgc cagcccggtg aatccctgct gtccatttcg gcatgagacc ttgtcccggt
     1261 gcgaaaaggc cttctgttaa aggtagtcta aattgaccgc cgtgcgcatg tccagataat
     1321 actaaatcaa ttggataggc ttggtatagt ggccaaaact ccggacgatg cgccagtaat
     1381 atcgtaaagt aatccggtga taaattagct gtcgcatcgt ctaaagcttc ttttaatgcc
     1441 gcttcttccc atacttcttt tggtagttct ttttctgccc agtcatctct tacaaaacga
     1501 ggatcccgga cgcctgctac catgattgcg gcgccatctt tttttagaaa atagcgttca
     1561 ttttcaagga cagtaacgtg atgtttctcc atgtctgctt taaaatcttc ataaaatgcg
     1621 cttcgaccct catgatttcc gctcacataa aaaaccggga attctttagc caatttgcgc
     1681 acaactgcca tcgctacata tggcgactca tctccatcaa tcatatctcc tgttagaaaa
     1741 acagcatccg gcgctagttc attcacgata ctaagcaaag gattattata taaaccaaaa
     1801 cttgcactat gcagatcaga caactgaaca aaagttgcgc cgtcccattc tgctggaatt
     1861 ttatctgata ctatttcata atctgttaca gttaaatgtt tggttgacca gtatgcatat
     1921 cctgtgaaag cagcaactgc cccaagtata ccccatccag tttttttcat agttagaaat
     1981 ctcctcacta aatttgctgt atgtttcatt atagcaaatt cagctggaac tcgctttact
     2041 cagctacttg gtattctgct agcttctgta aatcggccgg actaacttca gccacaatct
     2101 gcgtgccatt ctccaagtat tcagtagcta aaacatctgc atgatcattt aaataagcga
     2161 caacattccc cgcctcaaac ggaattaaaa aagtcgcttt ctcgtagcta gcaaaaagtt
     2221 ctttacgaat tacttcggtt agaaattcca aactttcttt ttcacgcgcg gaaaagacaa
     2281 ttgtattttc cgtttgctta ggataaattt ctccttctat taaatccgct ttgttgtatg
     2341 cataaataac tggaacatcc tccacaccaa cagctttcaa cgtttcttcc gtcgtcttca
     2401 tcattgtttt ataatgcgga tccgaataat ctaccacatg aatgagtaaa tctgcatcgc
     2461 gtgcttcttc tagtgtggag cggaatgctt tcactaattg atggggaagt ttgctaacaa
     2521 aaccaactgt atctgtgagt aaaaattgct tgttatctgg taaaacaatt tcgcgcacac
     2581 ttgtttcaag cgtagcaaag agcatgtctt tctcaaaaac ttgtttttca gcagtttcac
     2641 tataagcacg tactagccca ttcatcgttg tggattttcc agcattggta taaccaacaa
     2701 gtgacaccac aggaatttca tttttctttc gtttgcgacg gcgtacttca cggtcatcca
     2761 cgagcatgtc taactctttt tgtaaatggc ggatttggta tttgatggta cggcgatcgg
     2821 tttcaatttt cttttcgccc gaaccacggt tgctaagtcc gccttttccg ctttgttggt
     2881 ccatgtcttc gccttgtcca aaaattcgcg gaagttcata ttgtaatttg gcgatttgga
     2941 cttggagttg agcttctttt gtttttgctc ggttcgcgaa aatagctaaa atcaagcctg
     3001 ttctgtccat tacatccagt tccaacgctt cttctaggtt tctaatttgc gacggtgaaa
     3061 gttcatcgtt aaaaataatc aagcgagcat cttgcatttc tgccagccct ttgatttcat
     3121 ccacttttcc ttttccaaca taagtagcgc gattttcacg gtcgatattt tgccgtattt
     3181 cgcccactac ttccatatta tttgcagccg ctaaattggc taattcttcc attgaataat
     3241 caaaatcttt ttgtttctga cttataccaa cgattaatac ttttttctcc ataaaaaagg
     3301 acctcctgaa atagattcag cgcggtcagg gtttttgagt agaagaaaac acaaaaatag
     3361 catccaaaga tactagcttg ctttcaaatg aagcgcattc caccttcatt ctacccatat
     3421 ttattttggg tgccatacat gcacgcaaga ccaatcccgt tacccatact aaataagcat
     3481 ggatattccc gcactattaa attagttgca tagatttttt gggaaacgta gtctaatata
     3541 acgcatgatg ggcaaccctc cgttcattta agttgcccct agtttaacat ggtcgctttt
     3601 gtttcgcaac tatttctcgt taatttggcc tttcaatccg gaaaatatcg ccaagttttg
     3661 tatagtcatt tccagcgagt ctggcaactg gttcaagctt ttctggcaaa atatagtgat
     3721 gctcagaatc aaacacttca tctgcgaaat catatgtcaa aatacgtgcc agaattaaat
     3781 cggaaacaac ctcacccgca tcatttttaa tcggaataat ttgttctagt ttagctgtaa
     3841 gcacgatatt ggcctcggaa atctttgggg ttttcattcc aggaactttc tctaaatgca
     3901 agcttgtttt atcgatttcg ctcacatctg gtgccagtcg agcagcggtt ttattcattt
     3961 cttccacaaa agactcacta acaatatgaa tatttatttc tttcgtaaaa gccgcattcc
     4021 tcgctgtatc tttttgctcg ccattcgcgc gttgaacagc tatcgaaact atcgctggat
     4081 cgcttgaaac aacattaaaa aaactgaacg gggcggcgtt aaccgtctcc ccgtcttcag
     4141 caagcgtcgt tacaaaagca attggtcgtg gaataatact tcctgttaaa aatttgtagt
     4201 tttctttttg agataaatca gcacttttaa aaatagtcat ctacttccct catttctggt
     4261 tgttttgata ccattttttc gcttcttcaa gttcttccat agtaagagaa tgtccagccg
     4321 ctgtccaaac tgtttcgact tttgcgcccc gtttttcgag gatttccact aattcttcgg
     4381 aggcttttgc ggtaataagt ggatcattta agccagcgga cagaaatacg ttgcggtggc
     4441 taatcgaaaa ttcgggttgt ttatttccag ctggcatcgc atgaaacaaa atcgctttat
     4501 ggaaactatc ttctgcttgt agtagcgcgt tggctgcgat gtttgcgcca tttgaatacc
     4561 ctactgcaat cattcgttca aaatccaatt gatatttttc agccagttcg cgtgttgtag
     4621 tgattaattc tgcggtttta ctttccaagt cttctaaatc taagctgcca tcgtgaaatc
     4681 ttttgaaaaa ccgatttgct ccgccttctt taatatcacc gcgcaacgat aaaacagccg
     4741 cgtcacctgc gataaattcc gccacttcga caagcgactt ttcatcgccg cctgtcccgt
     4801 gaagtagtaa tagtggggct aaatccttat ttttccctgg aatataaatg tgttccatcg
     4861 tttatcagct ccgtttcgta ttaatcggac gtaccatttt ttcaatttct gcgcgttttg
     4921 gttctaaaaa tggaggcaag gctaattttt caccgagtgt ttcgtatggt tcatcatttg
     4981 caaagcccgg accatctgtc gcgaattcaa acaaaattcg ttctgaaacg ggtacataca
     5041 atgattcaaa gtagaagcgg tttacatagc cagagttggg tgcttcgatt gtattcatgc
     5101 ggtcaatcca tttttgcaat tcttcgtggt cttctactcg aaaagccaca tggtgaacgc
     5161 caccgtagcc ttgtattgca gctggaatat cggtacgttc ttcgacaatc acttgcgccc
     5221 cgttaccacc ttcgccaacc tcgtataaat gaagaccgtc ttcttctgtc acttttctaa
     5281 agccaaaaat cgtttgcaaa atcgcatcca tatttttgag cgaaactacc gttaaaaaga
     5341 ctggtcctaa accgtaaatt gcatattttt ctgggactgg tccgtttttc catggagttc
     5401 cag
//
LOCUS       DABQVC010000183         5400 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.183,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000183 DABQVC010000000
VERSION     DABQVC010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5400
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.183"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            120..1322
                     /locus_tag="IBJ56_002398"
     CDS             120..1322
                     /locus_tag="IBJ56_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAM3418644.1"
                     /translation="MVKKVKGRRYEGSIEQRSKNSWRMRVTVGYDYKGTPIRADRTTR
                     TKNERERERELRNFITELEQNGYTAPARMTFKAFVENEYMPKHAQNNLEVKTWTEYYK
                     SIVARAYPAFGGVQMDKITTLHIVNLVAKLQKPGARLDVKPTDSDEKKNKPLSPRSIR
                     NIYFAINSVFETAVEWKVIPINPAEGVRLPKTTKRPPTIYTPAEIELLNAALVKEPLR
                     LQVMIYIALISGCREAELAALEVKHVNLIEDELTFEQTLVAKAGEGLLLKESTKNDVA
                     GIVSIPAWLTNLIETYISNEVLDLKTEGKWTNHKFLFANMEGKPIRPDSIYQRWKRFL
                     ERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHVLKDTHKDA
                     ASDFENPF"
     gene            complement(1429..1501)
                     /locus_tag="IBJ56_002399"
     tRNA            complement(1429..1501)
                     /locus_tag="IBJ56_002399"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1466..1468),aa:Lys,seq:ctt)
     gene            complement(1589..2545)
                     /locus_tag="IBJ56_002400"
     CDS             complement(1589..2545)
                     /locus_tag="IBJ56_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HAM3418645.1"
                     /translation="MTASVFVAGKLLPETMEALSKWDVKAFSGEENITEAELIKNVTE
                     VDAIICPLSSPISAKVLESAKNLKIVANIGAGFDNIDVKKAQELGIAVTNTPDVSTEA
                     TAELTLGLILDVARRISEGDRLCRETPEQFKGWAPTFFLGTELSGKTLGIIGLGRIGQ
                     AVAKRAAAFGMKIIYSGHHPKEAAKEWNAEFVSQEELLKRSDVVTIHAAYSPSLKYLL
                     NETTLKTMKSSAFLINAARGPVVEEAALIKALEAGVIAGAALDVFEFEPKIGEDLAKL
                     DNVVLTPHIGNATVETRTAMGKIAIANVEAVLAGKAPLHSVY"
     gene            2676..3314
                     /locus_tag="IBJ56_002401"
     CDS             2676..3314
                     /locus_tag="IBJ56_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HAM3418646.1"
                     /translation="MKKITAPRIPDEDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEI
                     FEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIG
                     VNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDL
                     NKAQFLNCALNGVDLSSCIFESITAMPQDLKGVSIDFSHAPALMPLFGIRVK"
     gene            complement(3336..4388)
                     /locus_tag="IBJ56_002402"
     CDS             complement(3336..4388)
                     /locus_tag="IBJ56_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional transcriptional activator/DNA
                     repair protein Ada"
                     /protein_id="HAM3418647.1"
                     /translation="MITNQRDIDKYYDMLVEKNSNYEGVFFVGVKTTGILCRPTCPAK
                     KPLKENCEFFSTAKEALLASYRPCKRCEPLSNPTKLSPAVKLLVDAIEKNPEKKWTDK
                     DFDELSISANTARRQFKKQFGMTFIEYARSRRLGLAFKHIRGGNSIINAQIESGYESG
                     NGFRDAFSKTMGEVPHKSNDITILYSAWLETKLGSMLAISDDDSLLLLEFVDRKGLET
                     EIKKLRMRLNAAITPEKTVIIQQIEAELARYFNGELIDFKTPICYIGSDFQQSVWNEL
                     RRIPIGETISYKSLAEKLGRPTASRAVARANGANQLSLIVPCHRVINTNGALGGYGGG
                     LARKEWLIKHEKMVPR"
     gene            complement(4385..5158)
                     /locus_tag="IBJ56_002403"
     CDS             complement(4385..5158)
                     /locus_tag="IBJ56_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HAM3418648.1"
                     /translation="MTKNFEKLKSLHELPTPLILYNCWDVASARAIQQGGAPVIATSS
                     YAIAESLGVVDGEHLTFDEMFLVISRIAKNVSLPLTVDIETGYARNLEELAQNVERLL
                     VIGVCGVNLEDQLIGVTNPGLCSTEEQCDKIETIKETAAKMSTEIFINARTDVFFQGR
                     DETVDLLEEAIDRAKAYKEAGADAIFIPGLLLPKLIRAFVEKSPLPVNVMRMDGMLSN
                     EDLQKIGVKRISYGPFSFFQANLAIQLEVERIFEGGKAL"
BASE COUNT         1556 a         1148 c         1042 g         1654 t
ORIGIN      
        1 aacgtatgac gaaattacta aatcgatgac tatcaatatt gaatttaaat aaaagagagc
       61 ctccgggctt ttctttttac cgaaaaaaag aacgtatgtg cgaaaggagg gcttatttta
      121 tggtaaaaaa agtaaaaggt aggcgttatg agggttctat tgaacaacgt agcaaaaatt
      181 catggcgtat gcgcgtgact gtaggctatg actacaaagg tacgccgatt cgggctgaca
      241 gaacgacgcg aacaaaaaat gagagggagc gagaaagaga gttaagaaat ttcatcacag
      301 aattagagca aaatggatat acagctcctg caagaatgac atttaaagca tttgttgaga
      361 atgagtatat gccaaaacat gcacaaaata acctagaagt taaaacctgg acagaatact
      421 acaaatctat agtagcaaga gcttacccag cctttggcgg cgttcaaatg gataaaataa
      481 ctacacttca tatagttaac ttagtcgcaa aattacaaaa gcccggcgca agattagatg
      541 ttaaacctac agattcagac gaaaagaaaa ataagccact ttcgccacga tctatcagaa
      601 atatttattt tgcgataaat tcagtatttg aaactgcggt tgagtggaaa gtaatcccaa
      661 ttaaccccgc agagggtgta aggcttccaa aaacaactaa aagaccgcct actatttata
      721 ctcctgctga aattgaattg ttaaatgcag ctctagtgaa agagccactt agattgcaag
      781 taatgattta tatagcgctg atttcaggtt gtagagaagc tgaattagca gcattagaag
      841 taaaacacgt gaacttaata gaagatgagc taacattcga acaaacgcta gttgcaaaag
      901 caggagaagg tttacttctt aaagaatcaa ctaagaatga tgtagctggg atagtttcta
      961 tacccgcttg gttaactaat ttaatagaaa catatataag caatgaagtt ttagacctaa
     1021 aaactgaagg gaaatggacc aatcacaaat ttttattcgc caacatggaa ggcaaaccga
     1081 ttaggcctga ttcgatttat cagcgttgga aacgattttt agaaagacac aacttgccgg
     1141 tgattcgttt tcatgatttg cgtcacacat ctgctacact tttattgaac aaaggtagag
     1201 atataaaaat tatccaagag cggcttagac ataaatctag tgtgaccact tcaaacattt
     1261 atgcacatgt tttgaaagat acgcacaaag atgcagctag cgattttgag aacccttttt
     1321 aagctttctg ccccacctct gccccactta ataaaaaaag gcaattttaa actaaaattt
     1381 cacaaacaaa aaaccgctta aacgctttgt ttaggcggtt tttatatatg ggttgtgagg
     1441 gtttcgaacc cccgacccgc tgattaagag tcagctgctc taccaactga gctaacaacc
     1501 cgttgtcgta ttccgacaaa aaatattata ccataattca gcgataaaac acagccgcag
     1561 ccactcgctg cggctatatt tttcggtatt aataaacaga atgtagtggt gcttttcctg
     1621 ctaagacagc ttcaacattt gcaatggcta ttttgcccat tgctgtgcgt gtttccacag
     1681 ttgcgtttcc gatatggggt gttaatacga cattatccag tttagccaaa tcctcgccaa
     1741 tcttaggctc gaactcaaac acatccagcg cagcgccggc gataacgcct gcttctaatg
     1801 ccttaatcag tgcagcttcc tctacaacag gaccgcgagc agcattgatc aaaaaggcac
     1861 ttgatttcat cgttttcagt gttgtttcgt tcaacagata cttcaagctg ggactgtatg
     1921 ccgcatggat tgttacaaca tcgctgcgct tcaataattc ttcctgactc acaaactctg
     1981 cattccactc tttcgctgct tctttcggat ggtgcccaga ataaataatt ttcattccaa
     2041 aagcagccgc acgttttgca acagcttgtc cgattcttcc taatccaata attccgagcg
     2101 ttttgccact taattcagta cctaaaaaga acgttggtgc ccagcctttg aattgctcgg
     2161 gtgtttcgcg gcataatcgg tcgccttctg aaattctccg tgctacgtcc aaaatcaatc
     2221 caagcgttag ttccgccgtt gcttccgttg acacatctgg cgtattggtc actgcaatgc
     2281 ccaattcttg cgcttttttt acatcgatat tgtcaaaacc ggcaccaata ttcgccacga
     2341 ttttaagatt ttttgccgat tccaatactt ttgccgaaat tggggaagaa agcgggcaaa
     2401 taatcgcatc cacttccgtt acatttttta ttaactctgc ttctgtaata ttttcctcac
     2461 ctgaaaaagc tttaacgtcc catttgctaa gagcttccat cgtttctggt agtaattttc
     2521 ctgccacaaa tacgctcgct gtcatcacgt tcactcctca actgccattt ttattctaca
     2581 ttcattgtaa tccgtttttt atgaaaggta aacgattttc cgctcctttt cctagcaaaa
     2641 tacggtataa tgaaagcgga agtgaggtcg atataatgaa aaaaattact gcgccgcgga
     2701 ttcctgatga ggatttgacg gtttatccga atgatacata ttttattgaa gatattggag
     2761 aagttagtga gcaaatcttt agaaaaacaa cgctaactgg ggaaattttc gagcattttc
     2821 atttagaaac gattattttt gatgggtgtg tgttcgattc tgtttctctt gtaagcgcga
     2881 atttgactga tgttgtattt aaaaattgtg atttgtcgaa tttagattta atgggcgcaa
     2941 ttattcaccg agttcgtttt gaaaattgta aattaattgg tgtgaatttc agtgatgcta
     3001 cgcttagaaa ttgcgttttt gttgattgtt atgcggatta tgttgccttt cgttatgcta
     3061 acttgaaatg ggtggcgttt gaggcgggcg cgtatacgaa tagtgatttt agcggggctc
     3121 aactggtcga tacctatttg gaacggcttg atttgaataa agcgcagttt ttaaattgcg
     3181 cgctaaatgg tgttgatctt agctcatgta tttttgagtc tatcactgca atgccgcaag
     3241 atttgaaggg cgtgagcatt gatttttcgc atgctcctgc tttgatgccg ttgtttggaa
     3301 tacgggttaa ataattgaaa aaagatggtt ccgcgttacc ttggaaccat cttttcatgt
     3361 ttaattagcc attctttgcg cgcaagaccg ccaccgtagc ctcctaatgc tccgttagta
     3421 ttgattacac gatggcacgg gacgatgagg gataattggt tagccccatt tgctcttgcc
     3481 acagctcgac ttgctgttgg ccgccctagt ttttctgcca aacttttgta cgaaattgtt
     3541 tcgcctatcg gaattcgtcg cagttcattc cagacactct gttgaaaatc tgacccgata
     3601 tagcaaatcg gtgttttaaa atcaatcaac tcaccattaa aatatcgcgc taattcggct
     3661 tctatttgtt gaattattac tgttttttca ggtgtaatag ccgcgtttaa gcgcattcgt
     3721 aattttttaa tttctgtttc caagcctttt cgatcaacaa attccagaag caatagacta
     3781 tcatcatcag aaattgcgag cattgatcca agtttagtct caagccaagc ggagtataaa
     3841 atggtgatat cgtttgattt gtgaggaacc tcccccatcg tttttgaaaa agcatctcgg
     3901 aacccatttc cagactcata accactttca atttgtgcat taatgatcga atttccaccc
     3961 cgaatatgct taaaagcaag accgagacgc cgcgaacgcg catactcaat aaaagtcatc
     4021 ccaaactgct tcttaaactg gcgccgcgct gtatttgcgc taatggataa ttcatcaaaa
     4081 tctttatccg tccatttttt ctctggattt ttctcaattg catcaacaag caacttcaca
     4141 gctggcgaca atttcgtcgg attggagagt ggttcacaac gcttgcaagg ccggtaagat
     4201 gcaagtagcg cctccttggc tgtactgaaa aactcacaat tctcttttaa aggtttcttc
     4261 gccggacacg ttgggcgaca aagtattccc gtcgttttca ctccaacaaa aaatacgcct
     4321 tcataattcg aatttttctc cactaacata tcataatatt tatcaatatc ccgctgattc
     4381 gttatcacaa ggctttccct ccttcgaaaa tccgctcaac ttccagctga atcgctaaat
     4441 tagcctgaaa aaaactaaac ggtccataac tgattctttt cacaccgatt ttttgtaagt
     4501 cctcgtttga gagcatccca tccatcctca tgacattgac cggaagtggt gatttctcca
     4561 caaatgcgcg aattaatttt ggtaatagca gacccggaat aaaaatagca tctgccccag
     4621 cctccttgta tgcctttgcc ctgtcaatcg cttcttccaa caagtctacc gtctcatccc
     4681 gcccttggaa aaagacatct gtacgcgcat tgataaaaat ttccgtgctc attttcgccg
     4741 ctgtttcttt gattgtctcg attttatcac attgctcctc agtactgcat aaccccggat
     4801 ttgtaacgcc aataagctga tcttccaagt tcacaccaca aacaccaatc acaagcaacc
     4861 gctccacatt ctgagccagt tcctccaaat ttctagcata cccagtctct atatccaccg
     4921 ttagcggcaa actcacattc ttggcaatgc gcgaaataac taaaaacatt tcgtcaaaag
     4981 ttaaatgctc cccgtccact acgccaagtg actcagcaat cgcataactg cttgtcgcta
     5041 ttactggtgc tccgccttgt tggattgctc tggcggaagc gacgtcccag cagttgtaga
     5101 ggattagtgg ggtgggtagt tcgtgtaggg attttagttt ttcaaagttt tttgtcattg
     5161 gtttcaactc catttgttag gatggggtta gtatagcagg tggggagatt ggaggtacca
     5221 ggaaaattaa catggatgtt ttttggtaga tgtatgtaga actgtaaact cttgcatacg
     5281 ctaagtagcc taaaattctc ttcctcatct taagctactt gttcccgtat atagttaatt
     5341 tcattctctc tttgaaattt gttgtagaat tttgtcactt gtctttttat tggtttttaa
//
LOCUS       DABQVC010000184         5373 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.184,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000184 DABQVC010000000
VERSION     DABQVC010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5373
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.184"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..619
                     /locus_tag="IBJ56_002404"
     CDS             <1..619
                     /locus_tag="IBJ56_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carotenoid biosynthesis protein"
                     /protein_id="HAM3418649.1"
                     /translation="WLGSAITLLIFVVSTCIEWMQLSYTDEYIGSTLGGSVYGIPITM
                     GFIWVGMVAGTHIIAREITLKINIDWIRGGIYSFIAATMVMIFEVLIEPITMQSKQLY
                     ITQNGFTILQLSDFINWWLLGLILHLMIYFILSLTDSWERLKYPDLKSEIVIVYWIII
                     AFFVFLSFYLDLWTSIAIIIVSNIIFTACYFFSLEKEAQPKKKSE"
     gene            complement(620..2092)
                     /locus_tag="IBJ56_002405"
     CDS             complement(620..2092)
                     /locus_tag="IBJ56_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAM3418650.1"
                     /translation="MKLESKKKIAIIGAGPGGLAAGMLLSQLGYQVNIYEKNDRIGGR
                     TALHRMGKYSFDVGPSALTMTHVLTSLFMDCNRNILDYVSLLPINPIHTLYFKDITFP
                     LYSDQSETKAVIQTYFPGEEAGFERFMKENTKKMLYISPLNQFNYSSLFDFFRPTTLR
                     AIPSLTLGRSLMDDLARYFNSKYLRIAFSLQMRYLGMSPWDIPAAYSIIPFSEYYYGT
                     FHPIGGQNKIVEAMQQVVTENKGKFFFNSEVTAFESNGKEITGAVLANGKTIEADYYF
                     TNLDFIYSLTNEHPDKLDNKEYSSSAFILYLGLKTVLPFSHQSIIFPENYREFAHNTM
                     HKKILSKDIAIHLTNPSATDNTMAPINHSSIRIMVPVPNNTSNIDWKKETPAFRQLVL
                     ETIKERLDLPDLESQIEEEYIITPIDWEKKYHVKHGAIFGLQHLWRQHGYLHPSKKSP
                     TFKNLFVIGAGAMSGSSLPFIIENAQIATQKFLQKEKKSE"
     gene            complement(2197..2481)
                     /locus_tag="IBJ56_002406"
     CDS             complement(2197..2481)
                     /locus_tag="IBJ56_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkvS family protein"
                     /protein_id="HAM3418651.1"
                     /translation="MHTFFFSKIDATPKIEGVITMAKAHVGDIIEFKDGLTGIVEKLN
                     ENSVIVDLTYMENFKDLGIEEKTVVNHKNYQIIHSVEEDDEVENVEETEE"
     gene            2788..3054
                     /locus_tag="IBJ56_002407"
     CDS             2788..3054
                     /locus_tag="IBJ56_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HAM3418652.1"
                     /translation="MEQASFVVIDETGIHARPATLLVQAASKYSSDVQIEYTGKKVNL
                     KSIMGVMSLGIGKGADITIYTEGSDEKEAIEGLTEVLKKEGLAE"
     gene            3054..4772
                     /gene="ptsP"
                     /locus_tag="IBJ56_002408"
     CDS             3054..4772
                     /gene="ptsP"
                     /locus_tag="IBJ56_002408"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HAM3418653.1"
                     /translation="MAKELKGIAASDGIAIAKAYLLVEPDLSYEKTEVTDVESEVKRF
                     ESALEVSRTELSMIREKAAKDLGEDKAQIFDAHLLVLNDPELTGPIEESIKNSKTNAE
                     TALQETTDMFIGMFESMDNEYMRERAADIKDVRKRVLSHLLGVTIPNPALIDEEVVVV
                     AADLTPSDTAQLNRNFVKGFVTDIGGRTSHSAIMARSLEIPAVVGTKEVTASVAKNDI
                     VIIDGLEGNVIIHPTEEQIAHYEKIKSDFALQQAEWDKLKNEKTVSKDGVHVELAANI
                     GTPNDLEGVISNGGEAVGLYRTEFLYMGRDNFPTEEEQFEAYKAVVSGMDGKSVVVRT
                     LDIGGDKTLPYLELPEEMNPFLGFRAIRLCFANEELFRTQLRALLRASVYGNLKIMFP
                     MIATVNEFRQARDILLDEKAKLKAAGTEVSDSIELGIMIEIPAAAVLADQFAKEVDFF
                     SIGTNDLIQYTMAADRMNERVSYLYQPYNPSILRLVKMVIDASHKEGKWTGMCGEMAG
                     DQTAVPLLLGLGLDEFSMSASSILKSRSLIKRLDQSEMVKLAEEALNKSTAEEVVELV
                     EKYTAE"
     gene            4885..>5373
                     /locus_tag="IBJ56_002409"
     CDS             4885..>5373
                     /locus_tag="IBJ56_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HAM3418654.1"
                     /translation="MVIYLLAGFFLLLFIVLSFIDRRRISNGIILTMALFFSVLSVVY
                     ATFSKGNELLVSVMGTVLLLLVLLIPFFVVGIATMLIVNGRLMLKREGRKLANMLPLI
                     IGLGILALIITWFGSILKTGSPILGIVVVFIVALVGYFSFLFLSFLLSTFLYQFNFPR
                     YNQ"
BASE COUNT         1679 a          883 c         1013 g         1798 t
ORIGIN      
        1 atggcttggt tctgctatta cgctacttat ttttgttgta agtacatgta ttgaatggat
       61 gcaactaagt tatacagatg aatatattgg ttcaacgtta ggtggaagtg tttacggaat
      121 tcctattaca atgggcttta tttgggtcgg aatggttgcc gggacgcata ttatcgctcg
      181 ggaaattaca ttgaaaatta atattgactg gattcgtgga ggtatttatt cgtttatcgc
      241 agcaacgatg gtaatgattt ttgaggtttt aatcgaacca attacaatgc aatcaaaaca
      301 actttacatt acgcaaaacg gcttcacgat tttgcagtta tctgacttta ttaattggtg
      361 gcttttagga cttattttac atttaatgat ttactttatt ttgagtttaa cggatagttg
      421 ggagcgtctt aaatatccag atttaaaatc agaaattgtc atcgtttatt ggattattat
      481 tgcctttttc gtatttttgt ccttttacct tgatttatgg acatctattg cgattattat
      541 cgtttctaat attattttca ctgcttgtta ttttttcagt ttggaaaaag aagcgcagcc
      601 taaaaagaaa tccgaatgat tactcggatt tcttttcttt ttgtaaaaat ttctgggttg
      661 cgatttgcgc attttcaata ataaatggaa gcgagctacc cgacatcgcg cctgcaccaa
      721 ttacaaataa gtttttgaat gtaggcgatt ttttggaggg atgtaagtaa ccgtgctggc
      781 gccataaatg ctgtaaacca aagatcgcgc cgtgtttaac atgatatttc ttttcccagt
      841 ctatcggtgt aatgatatat tcttcttcaa tttgcgattc taaatctggt aaatctaacc
      901 gttctttgat agtttctagc actaattgac gaaaagcagg tgtttctttt ttccaatcaa
      961 tattactcgt attgttaggc acaggaacca taattcgaat actagaatga ttaattggcg
     1021 ccattgtatt atcagttgca gaaggattag tcaaatgtat agcgatatcc ttagagagga
     1081 tttttttatg cattgtatta tgcgcaaatt ctcgataatt ttcagggaaa ataattgatt
     1141 gatgcgaaaa aggtaacact gtttttaaac caagataaag gataaaggca gaagaggagt
     1201 attctttatt gtccaattta tctggatgct catttgttaa agaataaatg aaatctaaat
     1261 tggtgaaata ataatctgct tcaattgttt ttccattggc aagaacagcg ccagttattt
     1321 ctttaccatt cgattcaaat gctgtcactt cggaattgaa gaaaaacttc cctttatttt
     1381 ctgtaactac ttgttgcatc gcttcgacaa ttttattttg cccaccaatt ggatgaaagg
     1441 ttccataata atattcggaa aaaggaataa tactataagc agctggaata tcccatggtg
     1501 acatgcctaa ataccgcatc tgtaaggaaa aagcgatgcg aaggtactta ctattaaaat
     1561 atcttgctaa atcatccatc aacgatcgtc caagtgtcaa actaggtata gcacgcaaag
     1621 ttgtagggcg gaaaaaatca aataaagaac tataattaaa ttgattgagc ggcgaaatat
     1681 atagcatttt tttcgtgttt tctttcataa agcgttcaaa accagcttct tcgccaggaa
     1741 agtaagtttg gataaccgct tttgtttcag attgatcgct ataaagcggg aaggtgatat
     1801 ctttaaaata aagcgtatga attggattga ttggtaaaag cgaaacataa tccaaaatat
     1861 tacgattaca atccataaaa agagaagtca aaacatgcgt catggtgagt gcagaaggtc
     1921 cgacatcaaa tgagtattta cccattctgt gtaacgccgt tcttccacca attcgatcat
     1981 ttttttcata gatgtttact tgataaccta gttgacttaa tagcataccg gccgccaacc
     2041 caccaggtcc agctcctata atggcaattt tctttttact ttccaatttc aaacgctcct
     2101 ttaccccgtt tatatacata taaaaaacgc aaaaatatag agcattatca ctcggaaatg
     2161 ctttattttt gcgcgcttaa aaactattct gtttttttat tcttctgttt cttctacatt
     2221 ttcaacttca tcatcttctt ctacagaatg aataatttgg taattcttgt ggttaaccac
     2281 tgttttttct tcaataccta aatctttaaa attttccata taagttaagt cgactataac
     2341 ggaattctca ttgagttttt caacgattcc tgtaaggcca tccttaaatt caataatgtc
     2401 tccaacatgt gcttttgcca ttgttatcac tccttcaatt ttcggtgttg cgtctatctt
     2461 gctgaaaaag aatgtatgca tttttgaacc ttccttaaat tttgcactaa aaacctatta
     2521 aaatcaacta taagccatta aaaagtgcta tttaattcaa aacagaaaca atttagagat
     2581 aaatttaaaa aaacgttcta ttttttctat ttaaaaagag cgaaataagg tgctctgcaa
     2641 aaaaacattc taaaaaattt ttaatcaaat agttgtaaca ataggtaaaa catggtactc
     2701 tttttaattg agggatagtc tttttggctg aagttttttc ggcttaaaag gttacaacaa
     2761 atttctttac aaaggagaat gtaaattatg gaacaagcaa gttttgtagt aatcgatgaa
     2821 acaggaattc acgcacgccc ggcaactcta ttggtgcagg ctgcaagtaa atacagctct
     2881 gacgttcaaa ttgaatacac tggcaaaaaa gtaaacctta aatcaatcat gggcgttatg
     2941 tctcttggta ttggtaaagg cgctgacatt actatctaca ctgaaggtag cgatgaaaaa
     3001 gaagcaattg aaggactaac tgaagttctt aagaaagaag gattggctga ataatggcta
     3061 aagagttgaa aggtatcgca gcatctgatg ggattgccat tgcgaaagct tatctgctcg
     3121 ttgaacctga tctttcctat gaaaaaacag aagttacgga tgttgagagt gaagtaaagc
     3181 gttttgaaag cgcgttagaa gtttctagaa cagaactttc aatgattcgt gagaaagctg
     3241 ctaaagactt aggcgaagat aaggcacaaa tttttgacgc gcatcttcta gtgttaaatg
     3301 atcctgaatt aacaggacca attgaagaaa gtatcaaaaa ttctaaaacg aatgcagaaa
     3361 cagctttaca agaaacgaca gacatgttta ttggtatgtt tgaatctatg gacaacgaat
     3421 acatgcgtga acgtgcagcg gatattaaag atgtacgtaa acgtgttctt tctcacttac
     3481 taggtgtaac tattcctaat ccagctttaa ttgatgagga agtagttgtt gttgcagctg
     3541 atttaacgcc ttccgatacc gcacaactta accgtaactt tgttaaaggt ttcgtaacgg
     3601 atattggtgg acgtacttct cactccgcta ttatggcacg ttctcttgaa attccagcag
     3661 tagttggaac aaaagaagtt actgctagcg tagcgaaaaa cgatattgtt attattgatg
     3721 gtttggaagg taatgttatc atccacccaa cagaagaaca aatcgctcac tatgaaaaaa
     3781 ttaaatctga ttttgcttta caacaagcag aatgggataa acttaaaaat gaaaaaaccg
     3841 tttctaaaga cggcgttcac gtggagcttg cagcaaacat cggaactccg aatgatttag
     3901 aaggtgttat ttctaacggt ggggaagcag ttggacttta tcgtacagaa ttcttgtaca
     3961 tgggtcgcga caatttccca acagaagaag agcaattcga agcttataaa gcagtagttt
     4021 ccggaatgga cggaaaatct gtggttgttc gtacattaga tatcggtggc gataaaacgt
     4081 taccatacct agaacttcct gaagaaatga acccattctt aggattccgt gcaatccgtc
     4141 tttgttttgc gaatgaagaa ttattccgta cacaacttcg cgccttactt cgcgcaagtg
     4201 tatatggtaa cttaaaaatt atgttcccga tgattgcaac agtaaatgaa ttccgtcaag
     4261 cgcgtgatat tttactagat gagaaagcaa aactaaaagc tgctggaaca gaagtatctg
     4321 attccatcga acttggaatt atgattgaaa ttcctgctgc tgcagttctt gctgatcaat
     4381 ttgcgaaaga agttgatttc ttctctatcg gaacaaatga cttaattcag tatacaatgg
     4441 ccgcagaccg tatgaatgaa cgcgtttctt acctttacca accatacaat ccatccattt
     4501 tacgtttagt caaaatggtt atcgatgctt ctcataaaga gggcaaatgg actggtatgt
     4561 gtggagaaat ggctggagat caaacggctg taccacttct tttaggccta ggcttagatg
     4621 aattttcaat gagtgcttca agcattctta aatctcgttc gttaatcaaa cgtttagatc
     4681 aatctgaaat ggtgaaatta gcggaagaag ctttaaataa atctacagca gaagaagttg
     4741 tagaattagt tgaaaaatat actgcagaat aatatctgaa taaagaccta gacaattttg
     4801 ttgtctaggt ctttttatgt tgtgaaatag cctccgccca agtataattg gaaatacagt
     4861 tagttttaaa agggggcaac aagattggtt atctatctat tagcaggttt ttttctgctt
     4921 ctgttcattg tcttgtcgtt tatagataga cgacgtatta gcaatgggat tattttgaca
     4981 atggcactat ttttttctgt gctttcggtg gtttatgcta ctttttcaaa agggaatgaa
     5041 ctactcgtct cggttatggg gacggtgtta cttttattag ttttacttat tccatttttt
     5101 gttgtaggga tagcaacgat gctcattgta aatggacgat taatgttgaa acgtgaaggg
     5161 cgtaaattag ccaatatgct tcctttaatt attggtttag gcattttagc acttattatt
     5221 acatggttcg gtagtatttt aaaaacaggt agtccgattc ttgggattgt ggtagttttt
     5281 attgtggcat tagttggtta tttttccttt ttatttttat cgtttctttt atcgactttt
     5341 ctctatcaat ttaatttccc aagatataat caa
//
LOCUS       DABQVC010000185         5293 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.185,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000185 DABQVC010000000
VERSION     DABQVC010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5293
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.185"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(140..625)
                     /gene="manX"
                     /locus_tag="IBJ56_002410"
     CDS             complement(140..625)
                     /gene="manX"
                     /locus_tag="IBJ56_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HAM3418655.1"
                     /translation="MEIRLARIDDRLIHGQVATVWTKETQVERIIVISDDVAKDEVRK
                     TLLTQVAPPGVKASVVDVQKGIRVYNNPKYATTPVMLLFTNPTDVLTLVEAGVNITTV
                     NIGGMAFREGKHMITNAVSVDETDEAAFRKLDEKGIELEIRKVASDNKVKLIPLLDKD
                     K"
     gene            complement(625..1059)
                     /locus_tag="IBJ56_002411"
     CDS             complement(625..1059)
                     /locus_tag="IBJ56_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HAM3418656.1"
                     /translation="MPVGIIIGTHGEAARELLKSTEMIIGKQDNVEFITFVPGENTDT
                     LITKYKEKLDKLDTSEGVIFMVDLFGGSPYNASSQIALPEDNMDVVTGVNIPMLLETL
                     SMRAASNQKDLVETALTAGSGGVKSLKQSLPKIETEVGEDDL"
     gene            complement(1347..4163)
                     /locus_tag="IBJ56_002412"
     CDS             complement(1347..4163)
                     /locus_tag="IBJ56_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HAM3418657.1"
                     /translation="MKRIDRIYEFILENPSTKTIREQLEKNEGFTASTISETLSILRN
                     NVSMELNELHRQGKIIKIVGRPVLYFPKKAVEDEIGRTLSDNELEFDSCEPLLKMLKP
                     SIVERSPFDDLIGVNDSLKTPVEQAKAAVLYPPNGLHTMILGQTGVGKTLFANLMYRF
                     SQHAKRLPADAPFIIFNCADYYNNPQLLMSHIFGHVKGAFTGADNDKGGLVEKAEGGI
                     LFLDEIHRLPPEGQEMIFYLMDSGTYNKLGETDRTRKSNVLIIGATTENPESSLLKTF
                     MRRIPIIITLPSLEERTAFERVELLKYLLSSEAHRVNKPIRIEDEAAKALIGNTTYGN
                     IGQLKSNIQLVCAQGFLNSFDKDEEILIDFKTLPINIKDGFFHFSNRRKELQAIAEYL
                     EPYTTIFPELNNTLITSDEYEPNFNLYKIIEDKASILMDQGVEDDDIKKFIKMDIDIH
                     LNSFYNKFKNTIHNRENILKIVNEEILNFAEGVELRIEHQLGKKLNERFLLAFSLHLT
                     SFIKRIESNKPLKYTNIENVVNDQPEAYELSREIKDDIEATFHIRVPNMEVMYLTLLI
                     SSLLKEQENARVAVLVATHGNNTASSMVSVAKKLLGEGLVEGIDMPLDQSPKIVLDKL
                     TERAKEMDMGRGLLLLVDMGSLTSFAPVISERTGIPVRSIDMVSTATVIEAVRKSNIL
                     DMELDSIYDSLKDFRGYGGYNSDDDTLDSNQKPHAIITICATGEGTAEKLQLFIENIL
                     DTITTDAIKVIPIGLHEMDTKLEQLQEENDILMAVGIQDPKIQIPFIPLERLFGIDGE
                     EQLVSLVKQRNIIVKKGETGRIAKEIIEESLNEFLTYLNPKKTIEILSSFASVLEKKL
                     GYKLDNTFKINLLIHVGCALERMVLNDGLIYREPKDMLETNIFKALEQTNKEVIYKMN
                     LKLTNDELCYLYDILNEIQPEVLS"
     gene            4356..4991
                     /locus_tag="IBJ56_002413"
     CDS             4356..4991
                     /locus_tag="IBJ56_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HAM3418658.1"
                     /translation="MSKVLFIKASPLPNEVSRSSQVAETFMAEYKAKNPSDTVEELVL
                     YNTEVPLLDLELMTAGRELQAGKAFTDLAPDVQKKLNAYNVLTEQFLAADKYVFVFPL
                     WNLGIPPLLKAYIDTFVIAGKSFRYTEHGPEALLKDKKAILIHGSGGIYSAGPTSSFT
                     HGEPYLRTILQFIGINVVPSIFVEGIDHNPSKEAEIVAAAKAVAQESAAEF"
     gene            5185..>5293
                     /locus_tag="IBJ56_002414"
     CDS             5185..>5293
                     /locus_tag="IBJ56_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAM3418659.1"
                     /translation="MEEQKEELQRGLKNRHIQLIAIGGAIGTGLFLGAGK"
BASE COUNT         1607 a         1006 c          977 g         1703 t
ORIGIN      
        1 aaaagataat ttcattatga tgactgaata aattaagcat ctattacata agcttttatt
       61 catgaatcac ccctttaaag gtcttccttt aaacgtttgc attttcgggg ctctaaaaaa
      121 caagcgagcc gcggatgaat tatttatctt tatctagtaa tgggataagt ttgactttat
      181 tgtcagaagc gactttacga atttcaagtt caattccttt ttcatctaat ttgcggaatg
      241 ctgcttcatc cgtttcgtcc acagacacag catttgtaat catatgttta ccttcgcgga
      301 atgccatacc accaatgttt acagttgtaa tgtttacacc tgcttctacg agtgttagca
      361 catcggtagg gttagtgaat aatagcatga ctggagttgt agcatattta gggttgttgt
      421 atacgcggat acctttttgt acatccacga cgcttgcttt aactcctgga ggtgctactt
      481 gtgtaagaag tgttttacgc acttcatctt ttgctacatc gtcactaata acgatgatac
      541 gttctacctg cgtttctttt gtccaaacgg ttgctacttg accatgaatt aagcgatcat
      601 caatacgtgc taagcgaatt tccattataa atcgtcctcc ccgacttcgg tttctatttt
      661 tggtaatgat tgtttgagtg acttaacgcc acctgatcct gctgtaagag ctgtttcaac
      721 tagatctttt tgattacttg cagcccgcat tgagagcgtt tcaagtaaca tgggaatatt
      781 gacccccgtg acaacatcca tattgtcttc tggaagggcg atttggctag atgcgttata
      841 aggactgccg ccaaataaat caaccataaa aataacgcct tcagaagtat ccaatttgtc
      901 tagtttttct ttgtatttgg taataagcgt atcagtgttt tctccaggaa caaaagtaat
      961 aaattctaca ttgtcctgtt tgccgataat catttcagtt gatttcaaca attcacgcgc
     1021 agcttcacca tgtgtgccaa tgataattcc aactggcata ggtatctcct ccttaagcgt
     1081 ggatataatc atccattaat actaacgcaa aaactgtgcc aacatttctg tattaaacaa
     1141 cctcctttgc taatagaagc ggttcaaggc ttttgtaagc gtgtactaac agaagcggcg
     1201 cgccttaata cgctagatac gtagcttaat acactaagta ctaatcttag acatacatac
     1261 atcattaccc taaaagatta gccagaaaac gcaattgctg aaaataaaac aagccaactt
     1321 atgaaaaaat gttggcttgt ttgtaattat gaaagtactt ctggttggat ttcgttcaaa
     1381 atatcataca aataacatag ttcgtcattc gtcagtttta agttcatttt gtagataact
     1441 tctttatttg tttgttctag cgctttaaag atatttgttt caagcatatc ttttggttca
     1501 cggtaaatta aaccatcatt tagaaccata cgctctaagg cgcaaccgac atggatgagt
     1561 agattgattt taaaggtatt atcgagtttg tatcctaact ttttctccag tacactagca
     1621 aacgagctta gaatttcaat cgttttcttc ggattgaggt aggttagaaa ttcgttaaga
     1681 ctttcttcga taatttcttt tgcgatgcga ccagtttcgc ctttttttac gataatatta
     1741 cgttgcttca cgaggctaac aagttgctcc tcgccatcaa ttccgaaaag tcgttcgagc
     1801 gggatgaagg ggatttggat tttcggatct tgaataccga ctgccatcaa aatatcattt
     1861 tcttcttgta actgctccaa tttcgtatcc atttcatgca aaccaatcgg aatcacttta
     1921 atggcatctg tcgtaatggt atctaaaata ttttcgataa acagttgtaa tttttctgca
     1981 gtaccttcgc cagtcgcgca aatggtaatg atggcgtgtg gtttttgatt ggaatcaagt
     2041 gtatcgtcat cagaattata gccaccataa cctcggaaat ctttcaggga atcgtaaatg
     2101 ctatcgagtt ccatatcgag aatattggat tttcgaactg cttcaataac agttgcggtg
     2161 gagaccatat caatcgagcg aactggaatg ccagtacgtt ccgaaatgac cggagcaaaa
     2221 cttgtaaggg agcccatatc gaccagaaga agtagaccgc gccccatatc catttctttc
     2281 gcgcgctcgg tcaatttatc aagcacgatt ttcggacttt gatcaagagg catatcgatt
     2341 ccttccacga gtccttcacc gagtagtttt ttcgcaacac taaccatgct actcgctgta
     2401 ttattcccat gcgttgcgac gagtacggcg acacgagcat tttcttgttc ttttaaaagg
     2461 gaactaatga gtagtgttaa atacatgact tccatattag gaacccggat gtggaaagta
     2521 gcctcaatat catccttaat ttcccgtgat aattcatagg cttccggttg atcattgacc
     2581 acattttcga tattcgtata ttttaatggt ttgttacttt caattcgttt aataaaagag
     2641 gtaaggtgaa ggctaaatgc aagcaagaaa cgctcgttta actttttacc aagctgatgt
     2701 tcaattcgga gttcaacacc ttccgcaaaa ttcaggatct cttcattgac gatttttaag
     2761 atattttcgc gattgtggat cgtattttta aacttattgt aaaagctgtt aaggtgaata
     2821 tcgatatcca tcttgataaa tttcttaata tcatcatctt ccacaccttg atccattaaa
     2881 atcgatgctt tgtcttcaat gattttgtaa aggttgaaat tcggctcata ttcgtccgat
     2941 gtaatcaacg tattatttag ttcagggaaa atcgtcgtat atggctccaa gtattccgca
     3001 attgcttgaa gttccttgcg acggttactg aagtggaaga agccgtcttt tatattaatc
     3061 ggcaacgttt taaaatcaat caaaatctct tcatctttgt cgaaactatt aaggaaacct
     3121 tgtgcgcaaa cgagttgaat gttggatttt aattgcccga tatttccata agttgtatta
     3181 ccaatcagcg ctttggcagc ttcatcttca atacgaatcg gtttattaac tcggtgcgcc
     3241 tcactagaaa gtaagtattt taaaagttcc acacgttcaa acgccgtacg ttcctccaaa
     3301 cttggcagcg taataataat cggaatacga cgcataaacg ttttcaaaag cgaagattcc
     3361 ggattttcgg tagtagcacc gataattaaa acgttcgatt ttcgggttcg atccgtttcg
     3421 ccaagtttat tatacgtacc agagtccatt aagtaaaaaa tcatttcctg accttcagga
     3481 gggagacggt gaatttcgtc gagaaacaaa attccacctt ccgctttttc tacaagtcca
     3541 cctttgtcat tgtcagcacc ggtgaaagca cctttaacat gcccaaaaat gtgcgacatc
     3601 aaaagttgcg gattattata gtaatcggcg caattgaaaa taataaacgg cgcatcagca
     3661 ggtagacgtt tggcatgttg cgaaaaacga tacatcaaat tagcgaaaag tgtcttacca
     3721 acaccagttt gtccgagaat cattgtatgt aaaccatttg gtggatagag tacagcggct
     3781 ttggcctgct ccacaggggt tttaagactg tcattaacac caattaaatc atcaaaaggg
     3841 cttctttcaa caatacttgg tttgagcatt tttaaaaggg gctcacagct gtcaaactcc
     3901 aattcattat cagaaagtgt acgcccaatt tcatcttcta ccgctttttt aggaaaataa
     3961 agcactggtc ggccaacgat tttaatgatt tttccttgtc tgtgaagttc attcaattcc
     4021 atactgacat tatttcttaa aatagataat gtttctgaaa tagtactagc tgtaaaacct
     4081 tcattcttct ctaattgttc gcgaatggtt ttcgtggaag gattttctaa aataaattca
     4141 taaatacggt caatacgctt catcataaaa cctccattta gtgtatcgat gcacgattag
     4201 tgtattataa acgattaata cactctggaa ttctgtattt atcttagcat gactagtgaa
     4261 aatgtcaatg tttatttacc aaaaatcaaa ttgactagct acgcggatag tactattata
     4321 tagaaggaac aaataaaatc gatgaggtgt tcataatgtc aaaagtacta tttattaaag
     4381 cgtcaccact tccaaatgaa gtatcaagaa gttcgcaagt tgccgaaacg tttatggccg
     4441 aatataaagc caaaaatcct tctgatacag tagaagaatt agttttatat aatacagaag
     4501 taccactatt agatttagaa ttaatgacag ctggtagaga attacaagct ggcaaagctt
     4561 tcactgattt agcgccagat gtacaaaaaa aattaaatgc ttataatgtg cttacggaac
     4621 aattcttagc agcagacaaa tatgtttttg tgttcccgct ttggaacctt ggaatcccgc
     4681 cattattaaa agcttatatt gatacttttg ttattgctgg aaaatctttc cgttatactg
     4741 agcacggtcc agaagcactt ttaaaagata aaaaagcaat cttaatccat ggtagtggcg
     4801 gtatttattc tgctggacca acaagttcat ttactcacgg agaaccttat ttacgtacta
     4861 ttttacaatt tatcggtatt aatgttgtac catcaatctt tgtagaagga attgatcaca
     4921 atccgagcaa agaagcggaa atcgttgcag ctgctaaagc ggtagcgcag gaaagtgctg
     4981 cagaattcta aaaagtttgt gaaaaaatta tttcttgcta atgatattaa gacagtatta
     5041 tcaactgtct agaccaataa aaacacataa aaagattgct aatcccttta taaattggta
     5101 aagtagagaa gtagattgat cgataaagtg ctgaattaac tcggcacttt attcttttta
     5161 attactcgaa agggatgaat ttggatggaa gagcaaaaag aagaattgca aagagggctg
     5221 aaaaatagac acattcagtt aatcgcgatt ggcggagcaa ttggtacagg gctttttcta
     5281 ggagcaggga agt
//
LOCUS       DABQVC010000186         5286 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.186,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000186 DABQVC010000000
VERSION     DABQVC010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5286
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.186"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..5270
                     /locus_tag="IBJ56_002415"
     CDS             <1..5270
                     /locus_tag="IBJ56_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HAM3418660.1"
                     /translation="FDTLLVGADETTVTEDTTVKTAETETATEATESESGSDNEKAEE
                     PKEAEASKETTEKEEKAKTKEPASNIKTEINTDKSQLKQTNLKAVVPAGSTFNSLFPD
                     DNLAKKLAVIITGNAAATGNESVDSAALLAISQLDLSGETGNDPTDISNIEGLQYLEN
                     LTSLNLSENNISDLAPIKDLVKLVSLNLSSNRTLVNLSGVESLVNLQELNVSANKALE
                     DISEVASLPVLKEISAQGCNIKTLELDNPAGAILPEIETFYLQENDLTDLTSLAKLPK
                     LKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLETLGDISGLSELEMIQLSGCSKL
                     KEITSLKDLPNLVNITADSCAIEDLGTLNNLPKLQTLILSDNKDLTNINAVTDMPQLK
                     TLALDGCGITSIGTLDNLPKLEKLDLKENQLTSISEINDLPRLSYLDVSVNYLTTIGE
                     LKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINVSNNVIRTVGKMTELPSLKEFYAQN
                     NNISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQNLDVHSNRITNTSVIHDLPS
                     LETFYAQNNLITNIGTMDNLPELTYVDLSFNRIPSLAPIGDLPKLEILKVTDNYSYLR
                     SLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSDLTNLTELNLRDNGYISDISGLST
                     LSRLIYLNLDSNKIKDISALSNLTTLQELTLENNQIEDISALSDLDNLNKLALSKNKI
                     IDISPAANMVNRGASVTASNQTYTLPTVLSYQSSFTIDNPVVWYDGTPLAPSSIAHSG
                     TYKDGEITWTNMTAASSSTEFNFNRLKDGLTFSGTITQPYKSAVKVTANAEQTYTIGD
                     TISEEQFLKDVNAKSSDGAPVTSDFATVVDLNTFGEYEVTLTSEKDGIQGDSCKVIVK
                     VLHGAPVISADQTINYDKHATITEKQFLEDVHASTDLNTAITTNFSTAVNLNKGGDYT
                     VALNSENEDGVKAETVYVTVTVDKDPAPIISAKTDITYDKFSKKTEAAFLDDIDADTN
                     DGSIITSNFATAVNLDKAGDYTVTLNSINSDGVASTPTAIIVHVEKEKIATISANTAQ
                     QYEKYAEINETQFLKDVHASINASPTTAVLESDFETVVKLDVPGTYTVTITATNEDGG
                     VSAPKEVSVIVKKLPAPEITADKEITYPKFDEVSEAEFLSDIHATINEKNVTITSNFS
                     ADVNLNKAGDYTVTLNATNEDGVKATPVEVIVHVQQGERPVITADATISYDKFANITE
                     AKFLEDIHATSSDGQSSTVITSNFETATNFKTAMSYTVTLNAVNEDGISAEPVAVTVT
                     INKEPAATLKADAEVSYAKNEAVTESDFFKDVHLEGTEAPSTAKATSNFDSVVDRSKT
                     GDYTVTINATNEDGAVSTPIEVIVHIGAESAPVITANAEVKYNKHEQTDERRFLYDSD
                     AKIDEANVEIKTDFAEKVDINKVGTYTVTLTATNEDGQAANPVEVSVIVSDAAAEKVN
                     VKYVDENGAEISAAETLTGNLDDAFSIDAKSIAGYKCDATLSGVFSTVEQTVVFHYKA
                     IEPGVVTIKYEDANGKAVAEDKQITGEVGDDFEAEAQTVSGYSCRAIASGKITEEPQT
                     ITFTYTTATPSKKSGEITVQYVDESGKKLADSKKVTGDIDDSYSVEAKAIDGYSVVGD
                     DSAKGVFTEKSQTVTFKYKKNTQVSKDEPKVKGKTNQPPSADTKLKVDNNTLPATGDT
                     ENMALAVLIGFNMLLVASIFLFRKPKTNQ"
BASE COUNT         1970 a          863 c         1030 g         1423 t
ORIGIN      
        1 cttttgatac tctattagta ggtgcagatg aaaccactgt caccgaagat acgacagtga
       61 aaacggcaga aacagaaact gctactgaag ctacagaaag cgaatctggt tcagacaatg
      121 aaaaggcaga agagccaaaa gaagcagaag caagcaaaga aacgacagaa aaagaggaaa
      181 aagcgaaaac aaaagaaccg gcttctaata ttaaaacaga aattaataca gacaaaagtc
      241 agttgaaaca aactaattta aaagcagtag taccagcagg aagcacattt aattctttgt
      301 ttccagacga taatcttgct aaaaaattag ccgtgattat cacaggaaat gcggctgcaa
      361 caggtaatga atcagtggat agtgcggctc ttttagcaat aagccaactt gatttgagtg
      421 gggaaacggg caatgaccca acggatattt ctaatattga aggattacaa tatttagaga
      481 atttaacgag cctgaattta agtgagaata atatatctga tttagctcca attaaagatt
      541 tggtgaagtt ggtttcactt aacctttctt ccaatcgaac attagtaaac ctttcagggg
      601 tggagagttt agttaatttg caagaactta atgtctcagc aaataaggct ttagaggata
      661 tttcagaagt tgcatcgttg ccagtgttaa aagaaattag tgcgcaaggc tgtaatatta
      721 aaacattgga attagataat ccagctggcg ctattttgcc agaaatagaa acattttact
      781 tgcaagaaaa tgatttaacc gacttaactt cattagcaaa acttccaaaa ctaaagaatc
      841 tctatattaa agggaatgct tctttaaaaa gtttagcgac attaaaaggg gcgacgaagc
      901 ttcaattgat tgatgcgagt aactgtaccg atttagaaac gcttggagat attagcgggc
      961 tttcggaact cgaaatgatt caattaagtg gttgtagtaa actgaaagaa atcacaagct
     1021 tgaaggactt gcctaatttg gtgaatatta cggcagatag ctgtgcaatt gaagatttag
     1081 gaacactaaa taatttaccg aaattacaga cattaattct ctcagataat aaagatttaa
     1141 ccaatattaa tgcagttacc gatatgccac aattaaaaac attagccttg gatggctgcg
     1201 gaattacatc tattggaacg cttgataacc ttcctaaatt agaaaaatta gatctcaagg
     1261 aaaatcaact aactagtata agtgaaataa acgacttacc tcgattaagc tatttagatg
     1321 taagtgtaaa ttatcttaca acaatagggg aattaaaaaa attaccacta ttagaatggt
     1381 tgaatgttag ttcgaatagg ttatcagatg tgagtacact aacaaatttc ccgagtttaa
     1441 attatattaa tgtatcaaat aatgtcatta ggacagtcgg taaaatgact gaattacctt
     1501 cactgaagga attttacgct caaaacaaca atatatcaga tatttcgatg attcacgata
     1561 tgccgaattt aagaaaagtg gatgcgagta ataacttaat tacaaatata ggtacctttg
     1621 ataatttacc aaaattgcaa aacctagatg tgcattcaaa tagaattaca aatacatccg
     1681 ttatacatga tttaccaagt ttggagacgt tttatgcgca aaataatttg attaccaata
     1741 ttggtacgat ggataattta ccagaattaa cttatgtaga tttatctttc aacagaatac
     1801 catcacttgc tccaattggc gacttaccca agttagaaat attaaaagtt acagacaatt
     1861 attcttattt aagaagccta ggaacgatgg acggtgtttc taagctgaga aatttagaat
     1921 tacaaaacaa ttaccttaat tacactggaa cagaagggaa cttaagtgca ttaagtgatt
     1981 taacaaatct aacggaatta aatttgcgag ataatggtta tattagtgat ataagtgggc
     2041 tttccaccct atcaagacta atctacttaa atttagattc caataaaatt aaagatattt
     2101 ctgctttgtc taatttgacg actcttcaag aattaacact tgaaaacaac cagattgaag
     2161 atatatcagc acttagtgat ctggataatt taaacaagct agcactatca aaaaataaaa
     2221 ttattgatat tagtcctgcc gctaatatgg ttaatcgggg ggcgagtgtt actgcgagta
     2281 atcaaacata tacattgcca actgtattat catatcaaag ctcatttacc atagataatc
     2341 cggttgtttg gtatgacggc acaccactag cgccatcatc tatagcgcac tctggtactt
     2401 acaaggatgg ggaaataact tggactaaca tgaccgcagc ctccagttcc actgaattta
     2461 actttaacag gctaaaagat ggtttaacct tctcaggaac aatcacccaa ccttataaat
     2521 ctgcagttaa agtaactgca aatgcagagc aaacttatac aattggtgat actatttcag
     2581 aggagcagtt tttaaaagat gttaatgcaa aatcatcaga cggtgcacct gttacaagtg
     2641 attttgctac agtggtggat ttaaacactt ttggtgaata tgaagttact ctaacttctg
     2701 aaaaagatgg aatccaaggg gatagttgca aagtaattgt caaagttctt cacggagcgc
     2761 ctgtcatttc ggcagaccaa acaattaatt atgataaaca tgcgactatt acagagaaac
     2821 aatttttaga agatgttcat gcgagtacgg atttaaatac agctattaca actaatttta
     2881 gtacagcagt taacttgaat aaaggcggag attataccgt tgcgctaaat tctgaaaatg
     2941 aggacggcgt gaaagctgaa acggtctatg tcactgttac tgtagacaaa gatccggcgc
     3001 cgattataag tgcgaaaact gacatcactt atgacaaatt ctctaaaaaa accgaagcag
     3061 ctttcttaga tgatatagac gcagatacaa atgatggctc tataataact tctaactttg
     3121 ctacagcagt taatttagat aaagcaggtg attatactgt tactctgaat tctattaata
     3181 gtgatggtgt agcgtctacg ccaactgcaa ttattgtcca tgtggagaaa gagaaaatag
     3241 caacgattag cgcaaatacg gcacaacaat atgaaaaata tgcagagatt aatgaaacgc
     3301 aatttctaaa agatgttcat gctagtatta acgcgagccc aacaaccgca gttttggaaa
     3361 gtgattttga aacagtagtt aaactagacg tcccaggaac gtacacagta acgattactg
     3421 ctacaaatga agatggcgga gtatcggcac caaaagaagt ttctgtcata gtaaaaaaac
     3481 ttccagcgcc agaaatcact gctgataagg aaataaccta tccgaaattt gatgaagtaa
     3541 gtgaagcaga atttttaagt gatattcatg caactattaa tgaaaaaaat gtaacgatta
     3601 caagtaactt cagtgccgat gtgaatttaa ataaagctgg cgattacacg gtaacattaa
     3661 atgctacgaa tgaagacggc gtaaaggcta caccggttga agtaattgta catgttcaac
     3721 aaggagaacg tcctgttata acagccgatg caactatttc ctatgacaag ttcgctaaca
     3781 taacggaagc gaagttctta gaagatattc atgcaacaag tagtgatggt caaagctcaa
     3841 ctgtaatcac ctctaatttc gagaccgcga caaacttcaa aacagccatg agctacacag
     3901 ttacgcttaa tgctgtaaat gaagacggca ttagcgcaga accagtagca gtgaccgtta
     3961 caataaataa agaaccagcc gcgacgttaa aagctgatgc agaagtaagc tatgcgaaaa
     4021 atgaagctgt aaccgaatct gatttcttca aagatgttca tttagaagga acggaagccc
     4081 caagtacagc aaaagcaaca agtaattttg attccgtagt agatagaagt aaaacaggag
     4141 attatactgt tacgataaat gctacaaacg aagatggggc tgtctctaca ccaattgaag
     4201 taattgttca cattggagca gaaagtgcac cagtaattac agcgaatgca gaagtaaaat
     4261 ataacaaaca tgaacaaaca gatgaaagaa gatttttata tgatagtgat gcaaaaatcg
     4321 atgaagctaa cgtggaaatt aaaaccgatt ttgcagaaaa agtagatatt aataaagttg
     4381 gaacttatac ggtcacactg actgctacga atgaagatgg ccaagctgcc aatccagtag
     4441 aagtaagcgt cattgtaagt gatgctgctg ctgaaaaagt aaatgtaaaa tatgtagatg
     4501 aaaatggagc agaaattagt gcagcggaga ccttaactgg taatctagat gatgcatttt
     4561 ctattgacgc gaaatctata gctggataca aatgtgatgc cactttaagc ggcgtatttt
     4621 caacagttga gcagacagtt gtgtttcatt ataaagcaat cgagcctggt gttgtaacga
     4681 ttaaatacga agatgcaaat ggaaaagcag ttgccgaaga taaacaaata actggcgaag
     4741 taggagatga ttttgaagct gaggcgcaaa cggtgagtgg ttattcatgc cgagcaattg
     4801 caagtggtaa gataacagaa gaaccgcaaa ctattacttt cacatacact acagcaacgc
     4861 cttccaaaaa atcaggcgaa ataacagttc agtatgtaga tgagtcaggt aagaaattgg
     4921 ctgattctaa aaaggttaca ggggatattg atgatagtta tagtgtagaa gccaaggcaa
     4981 ttgatggcta tagcgtagtt ggcgatgatt ctgctaaagg tgtttttacc gaaaaatcgc
     5041 aaacagttac ttttaaatac aaaaaaaata cacaagttag taaagatgag cctaaagtta
     5101 aagggaaaac aaaccaacca ccaagtgctg atacgaagct aaaagtagac aataatacgt
     5161 tgcctgccac cggagatact gaaaatatgg cattagcagt tttaatcggt tttaatatgc
     5221 tactcgttgc tagtatattc ctttttagaa aaccaaaaac gaaccaataa atggataatc
     5281 tttaaa
//
LOCUS       DABQVC010000187         5247 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.187,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000187 DABQVC010000000
VERSION     DABQVC010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5247
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.187"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            3..2009
                     /locus_tag="IBJ56_002416"
     CDS             3..2009
                     /locus_tag="IBJ56_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid carrier-dependent
                     glycosyltransferase"
                     /protein_id="HAM3418661.1"
                     /translation="MAIFFNFYGIWNDDTVNPYYTAAVTSMVQNIHNFFYGAFDPAGF
                     ITVDKPPVALWLQAISALIFGIHGWSVILPQALAGVGSVILLYVLVKPRFGAWAARIT
                     ALIMALTPIAVAVTRTNNMDAILVFVLLLATFFLFKAVHRAKIGWLLLSFALIGVGFN
                     VKMLQAFMVVPAFLLFYFIATKLSWRKKLVQLVIALVLMLGVSVSWAVVVDQTAASER
                     PYIGSSQTNSVLELAFGYNGMERLLGQETGTGSNGNVEMGTPPSTNSTDSSNATPPTP
                     PSGSMQDGANGGTPPQGNNGAPPTGAPSNAANGGGNGSKMTGSTGMFGTGNAGPLRLF
                     QTALGDQISWFLPLAIIGMLAIFLVYRNENKRIYQLTSRQKEIVFWAAWLIPVAGFFS
                     IAGFFHHYYLIMLAPPIALLSGVGLVALFRLYQDKENWQRFLLPAAVTLTGGLQAFFV
                     AAYLPVLAVVIGIAALITSIILIVLRPQPSKLTAKITALALAILLIAPTYWSLTPILY
                     GGNSSLPEAGPQLKQSSGGGFADASVDSDLISYLQKNNTGETYLFGTTDATTAGPYII
                     KTKEAVMALGGFNGTDPTLTVKQLKQMIQAGEIKYFYLPSNSKASDSDVVKWIQENGT
                     EIDSSKWSSSGSTDDDTTSSASFNMQGGAQGMNGTGTGTLYQLK"
     gene            2136..2741
                     /locus_tag="IBJ56_002417"
     CDS             2136..2741
                     /locus_tag="IBJ56_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HAM3418662.1"
                     /translation="MTFWQDMMNFFSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFL
                     PFIVFVVVNVNAYGLLGGFLISVTAAIAGSLCVFLLARKFGQTRFLRFISGHKQIKRV
                     MEWIDRHGFSPIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALVGGKLIKVFAISYI
                     GYDFVDLIHQPLKLAILAVSVVILWFVGKRLEHWMSGKNLK"
     gene            complement(2781..3776)
                     /locus_tag="IBJ56_002418"
     CDS             complement(2781..3776)
                     /locus_tag="IBJ56_002418"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HAM3418663.1"
                     /translation="MYFIDNNNEKDPRINLAVEEFILTELNLDEPVLLFYINKPSIII
                     GRNQNTVEEIDTEYVEKNDVIVVRRLSGGGAVYHDEGNLNFSFITEDDGESFHNFAKF
                     TQPIVEALKRLGVNAELKGRNDLLIDGFKVSGNAQFATKGKMFSHGTLMYDLNLDNVA
                     ASLKPRKDKIESKGIKSVRSRVANISDFMDQEMTTEEFRDLLLLYIFNVEKVEDVKEY
                     KLTAADWEKIHEISAKRYGNWDWNYGKSPKFDLTRTKRFPVGAVDVRLNVQKGIITDI
                     KIFGDFFGVKNVADIEEKLVNTTYKREALDEALADIDVKEYFGNITKDEFLDLLY"
     gene            complement(3800..4531)
                     /locus_tag="IBJ56_002419"
     CDS             complement(3800..4531)
                     /locus_tag="IBJ56_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAM3418664.1"
                     /translation="MKLTVFGHWGGYPLANEGTSSYLLEEAGFKLLIDVGASAVSIMQ
                     NYIDPDDIDAAIISHYHPDHVADVGILQHIRLLSQKKEKPPVLPIYGHKEDERGYSYL
                     EMANVTKAIEYKPDDRLEIGPFKVTFLKTIHPVPCYAMRIEAGDKVFVYTADSAYQDS
                     FIPFSEGADLLVTDTNFFHDLAGKTKVHMASTEVAKIAKEANVKSLLLSHLPEVGDLE
                     VLKQEAAAIYKGEIALASKGFTKTF"
     gene            complement(4644..>5247)
                     /locus_tag="IBJ56_002420"
     CDS             complement(4644..>5247)
                     /locus_tag="IBJ56_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class A sortase"
                     /protein_id="HAM3418665.1"
                     /translation="IKNGIVKYMSGHETIEQYKASDIKKNNEKDATFDFESVQLPSMT
                     SVIKGAANYDKDAVVGSIAVPSVDVNLLVFKGTNTANLLAGATTMRSDQVMGKGNYPL
                     AGHHMRDESMLFGPIMKVKKGDKIYLTDLENLYEYTVTETKTIDETEVSVIDDTKDAR
                     ITLITCDKPTETTKRFVAVGELEKTEKLTKELENKYFPSK"
BASE COUNT         1451 a         1024 c          971 g         1801 t
ORIGIN      
        1 ttattgccat cttttttaat ttttatggta tttggaatga tgatacggta aatccttatt
       61 atacagctgc tgtgacaagt atggtgcaaa atattcataa ttttttctac ggagcttttg
      121 atcctgctgg ttttattacg gtagataagc cacctgttgc actttggttg caagcgatca
      181 gtgcccttat tttcggcata catggttgga gtgttatctt accacaagcg ttggctggtg
      241 ttggttcggt gattttgctt tatgtgctcg tcaaacctag atttggcgca tgggctgcaa
      301 gaattactgc tttgattatg gcgctgactc ctattgcggt agccgtgacg cgtactaata
      361 atatggatgc tattcttgta tttgtgttat tactagcaac ctttttcctt tttaaagctg
      421 ttcatcgtgc aaaaatcggc tggcttttac tttcttttgc gttgattggt gtcggtttta
      481 atgtaaaaat gctccaagct ttcatggtcg tgcccgcatt tttgctcttc tattttattg
      541 ctacaaaact aagttggaga aaaaagctag ttcaattagt aatcgcactt gtcttaatgc
      601 taggtgtctc tgtttcttgg gcagtcgtag ttgatcaaac agctgcttca gagcgacctt
      661 atatcggtag tagtcaaacc aattcggtgc ttgagttggc atttggctat aatggtatgg
      721 aacggcttct tggtcaagaa actggaacag gtagtaatgg taatgtggaa atggggactc
      781 ctcctagcac taactcaaca gattcaagta acgcaacccc accgactcct ccaagtggaa
      841 gtatgcagga cggtgctaac ggcggaactc ctcctcaagg aaataatggc gctcctccaa
      901 ctggagctcc cagtaatgcg gcaaacggcg gcgggaatgg atcaaaaatg actggtagca
      961 caggcatgtt tggaacaggg aacgctggac cacttcgtct attccaaacc gcacttggtg
     1021 atcaaattag ttggttctta ccacttgcta ttatcggtat gctagccatt ttcctggtgt
     1081 atcgaaatga aaataaacga atttaccaat tgacctccag acaaaaggaa atagttttct
     1141 gggcagcttg gcttatccct gtcgccggat tctttagtat cgctggcttt ttccatcatt
     1201 attatttgat tatgctagct ccgccaattg ctttacttag tggcgtaggt ctagtggcgc
     1261 tctttcggtt ataccaagac aaagagaatt ggcaaaggtt cctgctacct gctgcagtta
     1321 cgctaactgg aggtctacaa gcattctttg ttgctgctta cttgcctgtt ttagcggtag
     1381 ttattggtat tgctgcacta attacgtcta ttatcttaat tgtacttaga ccacaacctt
     1441 ccaaactcac cgcgaaaata acagcgctcg ctttagcgat tttgctcatt gctccaacat
     1501 attggtcttt aacacctatt ttatatggtg ggaatagttc cttacccgaa gctggaccac
     1561 aattaaaaca atctagtggt ggtggattcg ccgatgcatc tgttgatagt gatttaatta
     1621 gctatttaca gaaaaacaat accggagaaa cctacttatt tgggacaaca gatgcaacaa
     1681 cagcaggtcc ttatattatt aaaacgaaag aagctgttat ggcacttggt ggtttcaatg
     1741 gaacagatcc aactctaact gtaaaacaat taaaacaaat gattcaagcc ggtgaaataa
     1801 aatatttcta tctcccatca aatagtaaag cttctgactc agatgtggta aaatggattc
     1861 aagaaaacgg tacagaaatt gatagttcga agtggagtag ctccggttct acggatgatg
     1921 acaccacttc tagcgcttct tttaatatgc aaggtggcgc tcaaggaatg aatggcactg
     1981 gtacaggaac actatatcaa ttaaaataaa gaagaaatgt taaaatcctg gttaaaatac
     2041 taggatttta actatattca agctgtttta ttagcgcttt atcattttga tgtgagaaaa
     2101 taagtatgtt gttaaagact actggaggct tgcttatgac attttggcag gatatgatga
     2161 atttcttttc ttatgataat ttaatgtact ggctaagtga gtatcggaat ttaggtccac
     2221 ttttagcttt tctcttacct tttattgaag cgtttttacc atttttacca tttatagttt
     2281 tcgttgtagt gaacgtaaat gcatacggac tacttggtgg ttttttaatt tcggtgacag
     2341 cagcaattgc gggtagttta tgcgtatttt tgttagcacg gaaatttggt caaactcgtt
     2401 ttttacgttt tatttcgggt cacaaacaaa ttaaacgagt aatggaatgg attgatagac
     2461 atggttttag tccgattttc attttacttg taatgccatt taccccatct tcggcggtaa
     2521 atattgttgc aggtctctct aaaataaaag tatatcaatt tatattagcg cttgtaggtg
     2581 gcaaactaat caaagtcttc gccattagct atattggcta tgactttgtc gacttgattc
     2641 accagccgct caaactggct atattagctg tttctgtcgt tattttatgg tttgttggaa
     2701 aacggctgga acattggatg tcaggaaaaa atctcaaata aaaaaatgga aagcacgcgg
     2761 gatgcgtact ttccattttt ttaataaagt aaatctaaaa attcatcttt cgtaatgtta
     2821 ccaaagtatt cttttacgtc tatatctgct aaagcctcgt ccaatgcttc gcgcttataa
     2881 gttgtattga ctaatttctc ctcaatatcc gccacatttt ttacgccgaa gaagtctccg
     2941 aaaatcttga tatctgtaat aatccctttt tgtacattta agcgaacatc gactgctcct
     3001 actggaaaac gttttgttcg tgttagatcg aattttggag attttccgta gttccagtcc
     3061 caattaccat aacgtttagc agagatttcg tggatttttt cccaatctgc agcagttaat
     3121 ttatattctt ttacgtcttc tactttttca acattgaaaa tataaagtaa tagcaaatcg
     3181 cgaaactctt ccgttgtcat ttcttgatcc atgaaatcag aaatattcgc tacacgacta
     3241 cgaacagact taattccttt tgattcgatt ttatctttac gtggttttag cgatgcagca
     3301 acattatcta ggttcaaatc atacattaat gtcccgtgtg agaacatttt ccctttcgtt
     3361 gcaaattgtg catttccaga aactttaaaa ccatcaatca ataagtcgtt acgccctttt
     3421 agttccgcat tgacgcctaa acgtttcagc gcttccacga ttggttgcgt gaatttcgca
     3481 aaattatgga aagactcgcc atcatcttcc gtgataaaac tgaaatttaa gtttccttca
     3541 tcatgataaa cagcgccgcc gccagaaagt ctgcgcacga cgatgacatc atttttctcc
     3601 acatactctg tatcaatttc ttctactgta ttttggttgc gtccaatgat aatcgatggc
     3661 ttattaatat aaaataacag cacaggctca tctagattta attcagttaa aataaattcc
     3721 tccaccgcta aattaatacg aggatctttc tcattattat tatctataaa gtacatactc
     3781 ctaccccttt tcttctatat taaaatgttt tcgtgaatcc ttttgaagcg agtgcaattt
     3841 ctcctttgta aatagccgct gcttcttgtt ttagaacttc taaatcgcca acttcgggta
     3901 aatgactgag gagtaatgat ttcacattgg cttctttggc aatttttgca acttccgtgc
     3961 tagccatatg cacttttgtt tttccggcta ggtcatggaa aaaattggtg tctgttacta
     4021 ataaatctgc cccctctgaa aaagggataa aactatcttg ataagcgcta tctgcggtgt
     4081 atacgaaaac tttgtcacct gcttctattc tcatagcata gcaaggtacc ggatggatcg
     4141 tctttaagaa agttacttta aacggtccga tttcaagtct atcatctggt ttatattcga
     4201 ttgcttttgt tacatttgcc atttctaaat aagaataacc gcgttcatct tctttatgtc
     4261 catatatcgg caatactggc ggtttttcct ttttttgtga taataggcga atgtgctgca
     4321 aaatccctac atctgctaca tggtctggat ggtaatgaga aattattgcc gcatcaatat
     4381 catcaggatc aatatagttt tgcataatag aaacagcact tgcgccaaca tcaattaata
     4441 gcttaaatcc agcttcttcc agcaaataac tagatgtgcc ttcatttgct aatggatagc
     4501 caccccaatg tccaaaaacg gttagtttca tcactgcact tcctttctca aaataaacct
     4561 cctttatatg atacaacatt tataataaaa ggagaaatta tccagaaaaa aagacagctt
     4621 agaaaatccg ctgtcttttc tcattattta ctagggaaat atttattctc tagttctttt
     4681 gttagctttt ccgttttttc tagttcacca accgcgacaa accgttttgt tgtttcagtt
     4741 ggtttatcac atgtaataag tgtaattcta gcgtctttcg tatcgtcaat cacacttact
     4801 tctgtttcat caatcgtttt tgtttccgta acagtgtatt cgtataaatt ctcaagatct
     4861 gttagataaa tcttgtcgcc ttttttgact ttcattatag gaccaaacaa catagattca
     4921 tcacgcatat ggtgacctgc cagcggatag ttacctttac ccatgacttg atcagaacgc
     4981 atggttgttg cacccgccag taaattagct gtatttgttc ctttgaaaac taagaggtta
     5041 acgtctacag atggaactgc gatagaacca acgactgcat ctttgtcgta atttgctgct
     5101 cctttaataa cagatgtcat agagggtagc tgaacacttt caaaatcaaa tgtagcgtct
     5161 ttttcattat ttttctttat atctgatgct ttatattgct cgattgtttc atgaccactc
     5221 atgtatttca caatgccgtt tttgatg
//
LOCUS       DABQVC010000188         5238 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.188,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000188 DABQVC010000000
VERSION     DABQVC010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5238
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.188"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(102..761)
                     /gene="phoU"
                     /locus_tag="IBJ56_002421"
     CDS             complement(102..761)
                     /gene="phoU"
                     /locus_tag="IBJ56_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HAM3418666.1"
                     /translation="MVVRKIFTEQLNDLHQHLMEMGMLANEAIFKAVKSLVHRDTELA
                     KQVVAEDKAINNMELSLEQRSFELIALQQPVGMDLRKIVTVLKTSSDLERIGDHAVSI
                     AKTAILIGESKVLKPIPEIPEMGEIVKAMLQDVLKAYLAEDEVAARKIAERDNEVDKL
                     HKIVYQKCIHFMQEEPEHIEDVSQLLLVSQYIERIGDYVTNVCEWIVYLKSGEIEDLN
                     R"
     gene            complement(774..1553)
                     /gene="pstB"
                     /locus_tag="IBJ56_002422"
     CDS             complement(774..1553)
                     /gene="pstB"
                     /locus_tag="IBJ56_002422"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HAM3418667.1"
                     /translation="MTTETAEKVEYIIETKDVDLFYGSKQALQKIALNIKKNQVTALI
                     GPSGCGKSTFLRTLNRMNDLIPNVKTTGEIHIGGENVQDPKIDMVNLRKKVGMVFQQA
                     NPFPFSIYDNVAYGPRMHGIKDKKVLDEIVERSLRQAALWEEVHDRLDRSAIGMSGGQ
                     QQRLCIARVLAVKPDVILMDEPTSALDPISTAKVEDLILELKKDYTIVIVTHNMQQAS
                     RISDETAFFLNGRIVEFADTTSIFTNPAEKETEDYISGRFG"
     gene            complement(1568..2383)
                     /gene="pstB"
                     /locus_tag="IBJ56_002423"
     CDS             complement(1568..2383)
                     /gene="pstB"
                     /locus_tag="IBJ56_002423"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HAM3418668.1"
                     /translation="MLTKKPEINTILQATPDPHSLPAAMATEDLHVYYGDNHAIKGVD
                     LTFPENKVTALIGPSGCGKSTYLRALNRMNDEIDGCRMEGQILYDGININRKEVDLYN
                     VRKEIGMVFQKPNPFTKSIYENVAFGLKRHGMKNKKEIMERVEKSLRRAALWDEVKDD
                     LGKSALSLSGGQQQRLCIARAVAMQPKVLLLDEPASALDPISTSKIEDLINELKNKYT
                     IIIVTHNMQQAARVSDYTSFFYLGEVVEFSGTSELFTNPQQKQTEDYISGNFG"
     gene            complement(2411..3295)
                     /gene="pstA"
                     /locus_tag="IBJ56_002424"
     CDS             complement(2411..3295)
                     /gene="pstA"
                     /locus_tag="IBJ56_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HAM3418669.1"
                     /translation="MNVKTKDKIATGVFYAIAVLIVIILAGLLGYILVKGVPQLSWKF
                     LTTPPQSFQAGGGIGPEIWNSFYMLVITMIISVPISLGAGIYMAEYARKNWITDLIRT
                     TIEVLSSLPSIVVGLFGFLVFVIQMGWSFSVISGALTLTIFNLPLLIRVVEEALNAIP
                     NTQREAGLALGLSRWETITRVLVPAALPAIITGVILAAGRVFGEAAALIFTAGQSTPI
                     LDFTDWNPVNPASPLNIFRPAETLAVHIWKINGEGIMPDAQAVSDGASAVLILSVLLF
                     NVLARLLGKFVYKRMTSS"
     gene            complement(3292..4215)
                     /gene="pstC"
                     /locus_tag="IBJ56_002425"
     CDS             complement(3292..4215)
                     /gene="pstC"
                     /locus_tag="IBJ56_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HAM3418670.1"
                     /translation="MEAIKEKKLTQTSKKAHLETRGKIITFICISIMVIAAASILFFV
                     ISKGLATFTVNKVSFVDFITGTDWNPSQKDANGNPLVGALPMIIGSFAVTLFAACIAG
                     PLAIGAAIFMVEISPKFGKKILQPVMELLVGIPSVVYGFIGLSVVVPFIRDHISGSGF
                     GIAAATVVLTVMILPTVTSLSVDAIKSVPRHYREASLALGATRFQTIWKVVLRSSRSG
                     ILTAIVFGMARAFGEALAVQMVIGNSAVIPTSLFEPASTLTSILTMGMGNTVMGTLDN
                     NILWSLAMVLLAMSLFFIIVIRFIGRRRKVK"
     gene            complement(4309..5217)
                     /locus_tag="IBJ56_002426"
     CDS             complement(4309..5217)
                     /locus_tag="IBJ56_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3418671.1"
                     /translation="MKKKYLGIVAMLAAVMLVFAACGSDSSSSDKANGSTKGDKEVSG
                     SLTAVGSTALQPLVEAASKEFINTNPKAQINVQGGGSGTGLTQVQQGAVEIGNSDVFA
                     EEKDGVDASKLVDHRVAVVGMAPVVNKDVGVKNITKQQLIDIFTGKTTNWKDVGGKDE
                     KITIINRAEGSGTRATFEKWGLDGKTPVKAQEQDSSGTVRKIVSETPGAISYLAFSYI
                     DASVVGLSLDGVEPTEDKVATNDWKIWSYEHMYTNGEPKGLTKTFLKYMTSDEVQNNI
                     VPQLGYQSIKSMKVERDASGKLTDVK"
BASE COUNT         1503 a         1126 c          954 g         1655 t
ORIGIN      
        1 gctggggaat aaaagggttt taaatattga gaagttattt aaaccgccta acacaccaaa
       61 aaaagcccga ttaacctgtg gaaaggaaaa tcgggctttt tttatctgtt taaatcttca
      121 atttcgccac tcttcaagta aacaatccat tcgcacacat ttgttacata atcaccaata
      181 cgttcgatat actgggaaac taagagtagt tgtgaaacat cttctatatg ctctggctct
      241 tcttgcataa aatgaataca tttttgataa acgattttat gaagcttatc gacttcatta
      301 tcgcgctcag caattttgcg agcagcaact tcatcttctg caaggtaagc ttttaatacg
      361 tcttgtagca ttgcttttac aatttcgccc atttctggta tttcgggaat cggctttaaa
      421 accttacttt caccaattaa aatagccgtt ttggcaatac ttactgcgtg gtcaccaatt
      481 cgttctaaat ccgaacttgt ttttagtact gtgacgattt ttcgcaaatc cataccaact
      541 ggctgttgca aagcgatcaa ctcaaaagag cgttgttcca gtgaaagctc catgttattg
      601 attgctttat cttctgcaac tacttgttta gcaagctcgg tatcgcggtg tacaagtgac
      661 ttgactgctt taaaaatcgc ttcattcgca agcattccca tttccattag atgttggtgc
      721 aagtcgttta actgttccgt aaaaattttt ctgactacca taataacact cctttatcca
      781 aatcttcctg aaatatagtc ttctgtttcc ttttctgctg ggttggtaaa aatactcgtc
      841 gtatccgcga actccacgat gcgaccattt aagaaaaagg cagtttcatc ggaaatccgg
      901 gatgcttgtt gcatattatg cgtcacaata acaatcgtat agtctttctt taattctaaa
      961 atcaaatctt ctacttttgc tgtcgaaatt gggtccagtg cagaagttgg ctcatccatc
     1021 aaaataacat ccggtttaac agctagaact cgtgcgatgc aaagccgctg ttgttgtcca
     1081 cctgacatcc caatcgccga acgatccagc ctatcatgca cttcttccca aagagccgct
     1141 tgacgcaaac ttctttctac aatctcatca agtacttttt tgtcttttat accatgcatc
     1201 cgcggaccat aagcgacatt atcataaatc gaaaacggga atgggtttgc ttgttggaaa
     1261 accataccca ctttttttcg taagttaacc atgtcaattt taggatcttg tacattttca
     1321 ccgccaatat ggatttctcc agtcgttttc acattgggaa ttaaatcatt cattcggtta
     1381 agcgtacgca gaaaagttga tttcccacac cccgacggac caattagagc ggtcacttga
     1441 tttttcttaa tgtttaaagc gattttttgt agtgcttgtt tggaaccata aaataaatct
     1501 acatcttttg tttcaatgat atactctact ttttcagcag tttcagttgt cataaaaaag
     1561 ctcctttcta gccaaagtta ccagaaatat agtcttcagt ttgtttttgt tgcggattcg
     1621 tgaaaagttc ggatgttcct gagaattcca cgacttcccc cagatagaag aaagaagtgt
     1681 agtcggatac acgagccgct tgttgcatat tatgcgtcac gattataata gtatatttat
     1741 ttttcaactc attaattaaa tcttcaattt tgcttgtcga aattggatca agtgcagatg
     1801 ctggctcatc aagtaacaat acttttggct gcattgcgac agctctagca atacaaagac
     1861 gttgttgctg cccaccagaa agggatagtg cgctttttcc taaatcgtct tttacttcgt
     1921 cccaaagagc tgctcgacgc aaacttttct ccacacgctc cataatttct tttttattct
     1981 tcatgccatg acgtttgagg ccaaaagcaa cattttcata gatagatttc gtgaatggat
     2041 ttggtttttg gaataccatg cctatttctt tgcgaacatt gtataaatca acttctttac
     2101 gattaatatt aatcccatcg tataaaattt gaccttccat gcggcaacca tcaatttcat
     2161 cgttcattcg gtttaatgct cttaaatatg tggatttacc gcaaccagat ggtccaatca
     2221 aagctgtcac tttattttcc gggaaggtta aatcaacacc tttaattgcg tgattatcgc
     2281 cataatatac gtgcaaatcc tcggtcgcca ttgcagcagg aagtgaatga ggatctggtg
     2341 ttgcttgtaa aattgtatta atttcaggtt tcttcgttaa catcatttaa aatctccttt
     2401 tcctggcttt ttaagacgag gtcatgcgtt tataaacaaa ttttccaagc aggcgagcta
     2461 agacgttgaa aagtaatacg gaaagaatta ataccgcaga agctccgtca gaaacggctt
     2521 gtgcatctgg cataattccc tcaccattaa ttttccaaat atgaacagct aatgtttctg
     2581 ctgggcggaa aatatttagt ggtgaagctg gattgaccgg attccagtca gtgaaatcaa
     2641 gaataggtgt actttgaccg gctgtgaaaa taagcgccgc tgcttcacca aatacccgtc
     2701 ctgctgctaa gataactccg gtaataattg ccgggagtgc ggctggaaca agtactcgcg
     2761 tgattgtttc ccatctggat aaacctagag caagccctgc ttcacgctgc gtgtttggaa
     2821 tagcattaag tgcctcttcg acaacacgaa ttaatagtgg taaattgaaa atcgttagtg
     2881 taagcgcccc ggaaataacc gagaagctcc accccatttg aataacaaaa acaaggaaac
     2941 cgaatagccc tacgacaata gatggaagtg aggaaagcac ttcaatcgtt gtgcgaatta
     3001 aatctgtaat ccaattttta cgcgcatatt ctgccatata aattcccgca ccgagcgaga
     3061 taggaacaga aataatcatc gtaataacga gcatataaaa tgaattccag atttcaggac
     3121 cgattccgcc gccagcttgg aacgactgtg gtggggtcgt caaaaacttc cagctaagtt
     3181 gcggaacacc ttttactaaa atatagccaa gtaagccagc taaaataatg acaattaata
     3241 cagcaatagc atagaaaacg cctgtcgcga ttttatcttt tgtttttaca ttcatttgac
     3301 tttcctccta cgtccgatga agcggatcac aatgatgaag aatagtgaca ttgcgagtaa
     3361 caccattgca agtgaccaaa ggatattatt atcaagcgtc cccataactg tatttcccat
     3421 acccattgtt aaaatactag ttaatgtaga agctggctca aataatgagg ttggaataac
     3481 agcagagttc ccaataacca tttgtacagc aagagcttca ccgaatgcac gagccatccc
     3541 gaatacaatc gctgtcaaaa ttcctgaacg cgagctacga agcactactt tccaaatcgt
     3601 ctggaaacgt gttgcgccaa gtgccaacga agcttctcgg tagtgacgtg gaacagattt
     3661 aatcgcatct acgctgagtg aagtaacagt cggcaaaatc attactgtta aaactacggt
     3721 cgcagcggca ataccaaagc cacttcccga aatatggtca cgaataaatg gaacgacaac
     3781 acttagtcca atgaatccat aaacaacaga tggaatacca actaaaagtt ccataactgg
     3841 ttgcaaaatc tttttcccaa acttaggtga gatttccacc ataaaaatgg ctgcaccgat
     3901 tgcaagtggt cctgcaatac aagcggcaaa aagcgttact gcaaaagaac caataatcat
     3961 tggcaaagcg ccaactagag gatttccgtt tgcatctttt tgcgaaggat tccagtctgt
     4021 tccagttata aaatcaacaa aagacacttt attaactgta aatgttgcta aacctttcga
     4081 tataacaaaa aacaaaatag acgctgcggc aataaccatg attgaaatac agatgaatgt
     4141 aataattttg cctctagttt ctagatgcgc ctttttagaa gtttgtgtaa gcttcttttc
     4201 ttttatcgct tccaagtcac gtaagctcct ttctcctccc atgtttactc ctaacatggg
     4261 tatacgtcta tcccggtatt actaggatag acgcccattt cattcttttt attttacgtc
     4321 agttagttta ccagatgcat cacgttccac tttcatggat ttgattgatt ggtaaccaag
     4381 ttgtggtacg atattatttt gtacttcatc agaagtcatg tattttaaga acgtttttgt
     4441 taagcctttt ggttcgccat ttgtatacat atgttcataa gaccagattt tccagtcgtt
     4501 agttgcaact ttatcttcag ttggttcaac gccatctaat gaaagtccaa ctacggaagc
     4561 gtcaatgtaa gagaatgcta ggtagctgat tgctcctgga gtttcgctta cgattttacg
     4621 aactgtaccg gatgaatctt gttcttgtgc tttaactggt gttttaccat caagtcccca
     4681 tttttcgaaa gtagcacgtg ttccgcttcc ttccgcacgg ttgatgattg taattttttc
     4741 gtctttaccg ccaacgtctt tccagttagt agttttacca gtgaagatat cgattaattg
     4801 ttgttttgta atgtttttaa cgcctacatc tttgtttact actggagcca ttccgacaac
     4861 tgctacacga tggtcaacca gtttcgaagc atctacgcca tctttttctt cagcgaatac
     4921 gtccgagtta ccaatttcaa ctgcgccttg ttgtacttgt gttaaaccag ttccagaacc
     4981 accgccttgc acgttgattt gtgctttagg gttagtgtta ataaattctt tggaagctgc
     5041 ttcaacgagt ggttgaagtg cagtggatcc gactgctgtt aatgagccag aaacttcttt
     5101 atcccctttt gttgatccgt ttgctttatc tgatgaactg ctgtcacttc cacatgctgc
     5161 gaagacaagc attactgctg ctaacattgc tactattccc aaatacttct ttttcattat
     5221 cttattccca ccttgttt
//
LOCUS       DABQVC010000189         5228 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.189,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000189 DABQVC010000000
VERSION     DABQVC010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5228
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.189"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1830
                     /locus_tag="IBJ56_002427"
     CDS             <1..1830
                     /locus_tag="IBJ56_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAM3418672.1"
                     /translation="LISCVPAIFSKVTSWSSSTYWEALKSIFTAIFHPTKWEISYQGS
                     AEVFHVSLADFITGPYFYSMKIIVASLLISAIIAYLLVIATFRGPKWLRQGLSGFLSI
                     LQAFPDFSFIFLIQMAVVYIYQQTGVFTLNFYSLNGEQIYAAPIVCLSIIPTVLFYKM
                     MMLLMENEWQADYIQLARGKGLTDRAILLRHATPNMMQSLFYQSKTIVWFILSAYLIV
                     EFLFGIEGVLYYLLAGFSPLNIFLVLALVFTPFYFFYALIDLWISRGKNTESANVTRI
                     PLHWNSFQKTFTEKVNLKSKWRNFVVTTGQLLKRPSFSIPLATLSILLIASLIYGLMG
                     DKINSLKFISDATGRVTDMAPFKPNAQVWLGTDQAGNSILDQLLVGIKYTLLIAVIIA
                     TLRVVIGYILAVPLAFFSKPRTRNFVQSIADGMHYLPLSLLVFIIMVNEFISYSGVFE
                     TSLFTRITFQILIMVVIVLPITTNRISSEISQVLKKEFVLSALVFGGNARWILTKHIN
                     PQIWSKLILIWIEQLIQTLQMFVHLAIFGIFIGGAIMGADDGMLNPVIPELSGLIANA
                     KFVFANHQFWIILPPLVVFMILILCFQMMANSLLKREEESKKA"
     gene            complement(1859..2944)
                     /locus_tag="IBJ56_002428"
     CDS             complement(1859..2944)
                     /locus_tag="IBJ56_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HAM3418673.1"
                     /translation="MKKFILASLACTTLISFSPLVGQVEVSAATTNIATAPEKNLQEA
                     PPATVDQIFPDDALAFKVAQELGVSEDTVVTQEQLDTIETMVYVDFGVEDLTGMEYLH
                     NLKFVDLSQNKISNLENLANLTELETVSLNYNQITDITPLMNSPKLYNLELGVNQIST
                     LPSFENLTNLRILNLSSNQLKDISALKDTPQLTNLSISANNISDISVLSECDNLRVFY
                     AESNQLTSIESLRNKTKLEYFDANFNQIKDVTPLSTIPTIRSIKIEENQISDFSSLAG
                     HRLELFDATGQNIYLPDVALGDSTNIVMKDNLGVTLHDWVWYTPGTYQNDTLTWENAG
                     DNSAYFLNNQYPTYPSVTVTVYQTVTP"
     gene            complement(3078..3701)
                     /locus_tag="IBJ56_002429"
     CDS             complement(3078..3701)
                     /locus_tag="IBJ56_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HAM3418674.1"
                     /translation="MADLQDWLARIQAKITALKEKDPDLNLFGSESHAYKLNQPLSNQ
                     TLTEFENEHQITLPQDYRAFLEQIGNGGMGPYYGLETLADGLCASLDYKDEKYGVQTL
                     SEPFPHTDDWTAPGYKEGMSDEDYDAWQELCFQDKEVFGLLRIANFGCGVSINLVVNG
                     PSYGEIWVDDRNNDNGVYPDFYFGNEERLGFLEWYELWLDKSIEEIE"
     gene            complement(3705..5141)
                     /locus_tag="IBJ56_002430"
     CDS             complement(3705..5141)
                     /locus_tag="IBJ56_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HAM3418675.1"
                     /translation="MEHQKRSPFPKDFLWGSASAAYQIEGAWDADGKGKSVWDEYVRI
                     PGTTFKGTNGDVAVDHYHRYKEDVKLMADAGLKAYRFSIAWTRIFPNGKGEVNEAGLK
                     FYDNLIDELLKYDIEPLVTLYHWDIPQALFDEYGGWESRQVIEDFTNYSTTLFKRYGD
                     RVKYWVSLNEQNIFVGMGYGQALHPPKVSDPKRMYAVNHIANLANASVIKAFHEIVPD
                     GKIGPSFAYTPHYPIDTDPKNVQAADDAEELNSYFWMDMYAFGRYPKAVWKYLEENDI
                     APVIEDGDMELLASAKPDFMGVNYYQSATVAYNPLDGVGQNNEMNFTGKKGSTKETGV
                     PGVYKKVVNPFVKTTNWDWTIDPKGLQIALRRINSRYALPILITENGLGEFDKLVDGE
                     VNDDYRIDYLSAHATAIRDAISDGVDMLGYCTWSFTDLLSWLNGYQKRYGFVYVDRDV
                     EDDAPMTRIPKKSYYWYKQVIETNGADL"
BASE COUNT         1537 a         1082 c          948 g         1661 t
ORIGIN      
        1 ttaatcagtt gtgttcccgc gatatttagc aaagtgactt catggtcatc aagcacgtac
       61 tgggaggctc ttaagtcaat tttcacagcg attttccacc caaccaaatg ggaaattagt
      121 taccaaggaa gcgcagaagt ttttcatgtc tcgttggcag attttattac cggaccatat
      181 ttctactcca tgaaaattat cgtagcgagc ttgctaattt cagcgattat tgcttattta
      241 ctagtgattg caacatttcg cgggccaaaa tggttgcgcc aaggcttaag cggattctta
      301 tcaatacttc aagcttttcc agatttttcc tttattttcc ttattcaaat ggccgtcgtc
      361 tacatatatc agcaaacagg cgtgttcacc ttgaattttt acagcttaaa cggcgagcaa
      421 atttatgcag caccaatcgt ctgcttatcc atcataccaa ccgtgctctt ttacaaaatg
      481 atgatgctcc ttatggaaaa tgaatggcaa gctgactaca tccaactggc tcgcgggaaa
      541 ggcttaaccg atagagcgat actacttcgc catgccacac ccaatatgat gcaaagccta
      601 ttttaccaat ccaaaaccat cgtttggttt attttaagcg cctacctcat tgtagaattt
      661 ttattcggta tcgaaggcgt gctctactat ttactagcag gatttagccc attaaatatt
      721 ttcctagtat tagcactcgt gttcacccca ttttacttct tttacgcact aatagaccta
      781 tggattagcc gtgggaaaaa taccgagagc gcaaacgtga cccgaatacc gctgcactgg
      841 aatagtttcc agaaaacctt tacggaaaaa gtaaacctta aaagcaaatg gcgcaacttt
      901 gtagtaacga ccgggcagct cctaaaacgc ccatccttca gcattccgct ggcaacactt
      961 agcatcttac taatcgcgag ccttatttac gggcttatgg gagacaaaat caactcgctt
     1021 aaatttatca gtgatgcgac cggacgagtg accgatatgg cgcccttcaa accaaatgcg
     1081 caagtatggc taggcaccga ccaagccggc aactccattc tcgaccaatt actcgtcggc
     1141 atcaagtata cgctacttat agctgtcatc atcgcaacgc tacgtgtcgt gattggttac
     1201 attttggcag taccgctcgc atttttcagc aagccacgaa cccgcaattt tgttcaatca
     1261 atagcggacg gaatgcatta tctaccactg tcattactcg tctttattat catggtcaac
     1321 gaattcatca gctattctgg cgttttcgaa acaagcctat ttacacgcat aaccttccaa
     1381 attttaatca tggttgtcat cgttttacca attacaacca accgaatcag cagtgaaatt
     1441 tcccaggtgt taaaaaaaga gttcgtcttg agtgcgctcg tttttggcgg aaatgctcgc
     1501 tggatattaa ccaagcatat caatccacaa atctggtcca aattaatttt gatttggatt
     1561 gagcagctca ttcaaacgct acagatgttc gtccatttag ctatctttgg aattttcatc
     1621 ggaggggcaa tcatgggcgc cgatgacggc atgctaaacc cagttatccc tgaattatct
     1681 ggtttaatcg caaacgctaa attcgtgttc gccaaccacc aattctggat aattttacct
     1741 ccattagtgg tatttatgat tttaattctt tgtttccaaa tgatggcaaa ttcgcttttg
     1801 aaacgagaag aagaaagtaa aaaagcctag ttctataaaa gaactaggct attattattt
     1861 aaggagtgac tgtttgatag acagtcactg tgacagaagg gtaagttgga tattgattat
     1921 ttaaaaagta agcggaatta tcgcctgcat tttcccaagt aagtgtatca ttttggtaag
     1981 ttcctggggt gtaccaaacc caatcatgta atgttactcc gagattatct ttcattacaa
     2041 tattagtgga atcgccgagc gcaacatctg gaaggtatat attttgtcca gtagcatcaa
     2101 acaattctaa gcggtgacct gccaatgagc tgaaatcact aatctgattt tcttcaattt
     2161 ttattgacct aattgttgga atggtactga gaggtgtaac atctttaatt tgattaaaat
     2221 tagcatcgaa gtattctagt tttgttttat ttcttaatga ctcaatagaa gtcagttgat
     2281 tgctttcggc ataaaaaact cggagattat cgcattctga aaggacactg atgtctgata
     2341 tattatttgc tgaaatagat aaattagtta attgaggagt atcttttagg gccgaaatat
     2401 cttttagttg attgctactt agatttaata tccttaaatt agttaaattt tcgaaggatg
     2461 gtaaagtaga gatttggtta acgcctaatt ctaagttata taatttaggt gagttcatta
     2521 gtggagtaat atctgtaatt tgattgtagt taagtgatac cgtttctaat tctgttaaat
     2581 tagcgagatt ctctaagttg ctaattttat tttggcttaa atctacaaat tttaagttgt
     2641 gtaaatattc catgcctgtt aaatcttcca caccgaaatc cacatatacc attgtttcga
     2701 tagtatctag ttgttcttgt gtaacgactg tatcctcgga aacacctagt tcctgtgcga
     2761 ctttaaaagc tagagcatca tctgggaaaa tttgatcaac cgtggctgga ggagcttctt
     2821 gtaaattttt ttctggggca gtggcaatgt ttgttgtagc agcgcttact tcgacttgtc
     2881 ctaccaaagg actaaaacta atcaaagtcg tacatgcaag gcttgctaga ataaattttt
     2941 tcatgtcatc ctactccttt tctataatat aaatggagta tagcatgcaa attatttaaa
     3001 aataaaaagc catcacatat gaacattgca taaaaaaacc gctaaaaaga gtatgcttct
     3061 ttttagcggt tttttcttta ttcaatttcc tctatagatt tatctaacca taactcatac
     3121 cattcaagaa agcctaaacg ttcttcattc ccaaagtaaa aatcaggata gacgccatta
     3181 tcattatttc tgtcatccac ccaaatttct ccataagaag gaccgtttac aacaaggtta
     3241 atcgaaacgc cacaaccaaa attagcgata cgcagaagtc caaatacttc tttatcttgg
     3301 aagcacagtt cttgccaagc atcataatct tcatcggaca ttccttcttt ataaccagga
     3361 gcggtccaat catctgtatg tggaaaaggc tcacttaatg tttgcacccc gtacttttca
     3421 tccttgtaat caagcgaggc gcaaagcccg tccgcaagtg tttctaagcc ataataagga
     3481 cccattccac cattaccaat ttgctctaga aaagcgcgat aatcttgagg taaggtaatt
     3541 tgatgctcat tctcaaactc ggtaagcgtt tgattagaca atggttgatt aagtttatag
     3601 gcgtggcttt ctgaaccaaa taaattcaaa tcgggatctt tttcttttaa cgcagtgatt
     3661 tttgcttgga ttctagctag ccaatcttga aggtcagcca tcatttataa atctgctcca
     3721 ttagtttcaa tcacttgttt ataccaataa taacttttct tcggaatacg tgtcattggc
     3781 gcatcatctt ccacatcgcg gtcaacataa acaaaaccgt aacgtttttg atagccgttt
     3841 aaccagctta gaaggtctgt gaagctccaa gtacaatagc ctaacatatc aacgccatca
     3901 ctgattgcat cgcgaatagc agttgcgtgc gcgcttagat agtcaatacg gtagtcatcg
     3961 tttacttcac catcaactaa tttatcaaat tcacctaaac cgttttctgt aattaaaatt
     4021 ggtaaagcat agcggctgtt aatacgacga agcgcaattt gtaagccttt tggatcgatt
     4081 gtccagtccc agttcgttgt tttcacaaaa ggattaacga cttttttgta aacgccagga
     4141 acaccagtct ctttcgtgct acctttttta ccagtgaagt tcatttcgtt gttttgacca
     4201 acgccatcaa gcgggttgta agcaacagtt gcggattggt aatagtttac gcccatgaaa
     4261 tctggttttg cagaagcaag aagttccata tcgccgtctt caataactgg cgcaatatcg
     4321 ttttcttcta aatatttcca aaccgctttc ggatagcgcc caaaagcata catatccatc
     4381 cagaaataac tgtttaattc ttctgcatcg tcggcagctt gaacgttttt aggatctgtg
     4441 tcgattggat aatgtggtgt gtaagcaaaa cttggtccaa tttttccatc aggaacgatt
     4501 tcgtggaaag ctttgataac actcgcatta gctaagttcg caatatggtt tactgcgtac
     4561 attctttttg gatcgctaac ttttggcggg tgaagcgctt gaccataacc cataccaaca
     4621 aagatatttt gctcattcaa ggaaacccaa tatttcacgc ggtcgccgta acgtttgaat
     4681 agcgttgtgg aataatttgt gaaatcttca ataacttggc gagattccca gccaccgtat
     4741 tcatcaaata atgcttgtgg gatatcccag tgataaagcg ttacaagcgg ttcaatgtca
     4801 tatttaagca actcatcaat caagttatca taaaatttca atccagcttc attcacttcg
     4861 cctttaccat ttggaaaaat acgagtccaa gcgatagaga aacggtaagc ttttaggcca
     4921 gcgtctgcca ttagttttac gtcttcttta taacggtgat aatggtcgac agctacatcg
     4981 ccatttgtac ctttaaaagt agttccagga atgcggacat attcgtccca aactgattta
     5041 cctttgccgt ctgcgtccca tgcgccttcg atttgataag ctgccgatgc agaaccccat
     5101 aagaaatctt tcgggaatgg tgaacgtttt tgatgttcca ttaatataac ctccattaaa
     5161 gcgattttta ttaaaaaact ctactaatat attttaaagt atattctttt aaaaagatag
     5221 ttaaaaaa
//
LOCUS       DABQVC010000190         5218 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.190,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000190 DABQVC010000000
VERSION     DABQVC010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5218
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.190"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..394
                     /locus_tag="IBJ56_002431"
     CDS             <1..394
                     /locus_tag="IBJ56_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418676.1"
                     /translation="VTTAMEITHVNQPDKKAFALSMLEKVGITEDMARQKVLTLSGGQ
                     QQRVSIARALCCETELIVADEPTGNLDERTSKEVVTLFQDLAHKEGKCVIMVTHDPEI
                     AKVSDVKLTLKNGSFVEKKQSTNSLINS"
     gene            702..3341
                     /gene="alaS"
                     /locus_tag="IBJ56_002432"
     CDS             702..3341
                     /gene="alaS"
                     /locus_tag="IBJ56_002432"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HAM3418677.1"
                     /translation="MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSG
                     VATMKKYFDGSVIPDNPRMANAQKSIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKE
                     GAIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWD
                     IGIGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYT
                     PLPKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFK
                     VIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGK
                     IMNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADI
                     FKLYDTFGFPVELTEEYAEDHGLKVDHAGFEAEMKEQRDRARSARADVKSMQVQGELL
                     ANLTEKSAFVGYNSTEQVSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVA
                     DKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNH
                     TATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWE
                     QINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQVGKYSIELCGGVHVRNTADIGLF
                     KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQAD
                     LREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDK
                     KIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRCGGNGGGRPDMAQAG
                     GKNPAELGTALDYVSTWVKEQQA"
     gene            3433..3705
                     /locus_tag="IBJ56_002433"
     CDS             3433..3705
                     /locus_tag="IBJ56_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HAM3418678.1"
                     /translation="MDSKDQTMFYNFGDDSIEEDVKKLMKQVYVALEEKGYNPVNQIV
                     GYLLSGDPAYIPRHKDARSMIRRLERDEIIEELVKAYLKNNEIGEK"
     gene            3702..4118
                     /gene="ruvX"
                     /locus_tag="IBJ56_002434"
     CDS             3702..4118
                     /gene="ruvX"
                     /locus_tag="IBJ56_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HAM3418679.1"
                     /translation="MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDR
                     VKELVLEYEVEKVVVGLPKNMNNTIGPRAESSKIYAEVLESRIGLPVVLWDERLTTSA
                     AERTLIEADVSRKKRKEVIDKLAAVMILQSYLDTTN"
     gene            4134..4436
                     /locus_tag="IBJ56_002435"
     CDS             4134..4436
                     /locus_tag="IBJ56_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HAM3418680.1"
                     /translation="MAEEHNHNHEEENIIWITNEEGKEEAYEILFDFDSEDFDKSYVL
                     YFPAGKGEDEEIEILASSYIQDEEGKQGQLKPVETDEEWDMIEEILATFLADEDEE"
     gene            complement(4482..5108)
                     /locus_tag="IBJ56_002436"
     CDS             complement(4482..5108)
                     /locus_tag="IBJ56_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAM3418681.1"
                     /translation="MLHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIM
                     LFGGFMAEAGKLNFWLVVFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHL
                     DKAELWFGRYGARAVFFGRVLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLT
                     WLGYSLGSNWSVVEKYTRPISYLMLALVIAIVVYLAYKVWNKRARNAK"
BASE COUNT         1851 a          947 c         1064 g         1356 t
ORIGIN      
        1 tgtcacaact gcaatggaaa ttacccatgt caatcaacca gataaaaaag cctttgctct
       61 aagtatgctg gaaaaagtag gtatcacaga agacatggca cgccaaaaag tattgacgtt
      121 aagcggtgga caacaacaac gggtttcgat agcgcgggct ctctgctgtg aaacggaatt
      181 aattgtagcg gatgaaccaa ccggaaattt ggatgaacgt actagtaaag aagtagttac
      241 tttattccaa gatttagcgc ataaagaagg taaatgcgtt atcatggtaa cgcatgaccc
      301 cgagatcgca aaagtatccg atgtgaaact aacgcttaaa aacggaagct ttgttgaaaa
      361 gaaacaatca acgaatagtc taataaacag ttgacattta gccatccgtt ctttataatt
      421 tagtttattg ttgaatagaa attgatacat gataggaata tgattttggt ttccacgtga
      481 ttagagagtt ttcccatggc tggaaggaaa accacgcttg caccaaaatt gctctcccat
      541 tagatgatcc gtcttatcca cgttaacaga taacggaaga ggtaatgata caaagtctat
      601 atcattgcaa acagggtggt accgcgattt tactgaaatc gtccctgtga gcaatcatat
      661 aggctttttt tgttgtaaaa accaaaagga ggaaataaaa aatgaaacaa ttatcaagcg
      721 ctgaagtaag acagttattt ttagatttct ttaaagaaaa agggcatact atcgaaccta
      781 gtgcaccact tgtaccaaat aatgatccaa caattctttg gattaacagt ggtgtagcaa
      841 ccatgaaaaa atactttgat ggttccgtta ttccagataa tccaagaatg gcgaacgctc
      901 aaaaatcaat ccgtacaaat gacattgaaa acgttggtaa aacagcgcgt catcatacat
      961 tctttgaaat gctaggaaac ttttctatcg gtgattattt taaagaaggg gcgattgttt
     1021 ttgcttggga attcctaacg agccctaaat ggattggttt tgatccagat aaattgtatg
     1081 tgactgtgta tccagaagat gaagaagcga aaacgttatg gcgcgaaaaa attggtttaa
     1141 gtgatgatca tatcgtcgaa attgaagata atttctggga tatcggtatt ggaccaagtg
     1201 gcccagacag cgaaattttc tatgaccgtg gacctgcttt cggtgacgat gcaagtgatc
     1261 cagaattata tccaggcgga gaaaatgagc gttatttaga aatttggaac ttagtatttt
     1321 ctcagttcaa ccacaatcca gatggaactt acactccgct accaaaacaa aacattgata
     1381 cagggatggg acttgaacga atggtttcca tcatccaaga cgcaccaact aactttgaaa
     1441 cagatttatt catgcctatt attcgtgaag ttgaacaaat ctctggcgtg aaatatggcc
     1501 attctcaaga aaatgatgtg gcatttaaag tgattgctga ccatattcgt actgtagcat
     1561 ttgcaatcgg tgacggcgct ttaccatcca acgaaggacg cggatatatt ttacgtcgtt
     1621 tacttcgccg tgctgttcgt tatgcaaaag tcctaacaat caacgaacca ttcatgtaca
     1681 aattagtacc agtagttggg aaaattatga atagtttcta tccagaagta gaaaaccaaa
     1741 cagactttat ccaaaaagtc attcgtacag aagaagaacg tttccacgaa acattaaacg
     1801 aaggtctagc aattttggaa acaatcctaa aaactgcgaa agaaacaaat gaacaaatta
     1861 tcaaaggcgc agacattttt aaattatatg atacattcgg tttccctgta gaattaacag
     1921 aagaatatgc agaagaccat ggcttaaaag tggatcacgc tggcttcgaa gcagaaatga
     1981 aagaacaacg ggaccgtgct cgctcggctc gtgctgatgt aaaatcgatg caagtgcaag
     2041 gcgaactact tgctaattta accgaaaaaa gtgcatttgt tggctataat tcaacagagc
     2101 aggtttcaga aatcttgtat ttaatccaag atgacacgct tgtggaggaa gttgcagctg
     2161 gaagtgaagc acaagtcatc ttcaaagaaa caccatttta tgcagaaagc ggcggacaag
     2221 ttgctgacaa aggaaccatc gagagcgaaa ctggtcttgc ttatgtagaa gatgtacaaa
     2281 aagcgccaaa caaacaaaat ttacaccgta tttctgtcaa agaaggcgta ttaaaaacag
     2341 gcgacacagt gaaacttgct gttgataaag taaaacgtcg cgaaacaatc aaaaatcata
     2401 cagcgacaca ccttttacac cgcgcactca aagacacatt aggcgagcat gttaaccaag
     2461 ctggatctct tgtttcaccg gatcgtttac gttttgactt ctctcatttt ggtcaaatta
     2521 cagaagaaga attaacgaaa atggaagaaa tcgtgaatga aaaaatctgg gaacaaatca
     2581 atgttgtgat tgaagaaatg ccaatagcag aagcaaaaga acttggcgct atggcactat
     2641 ttggcgaaaa atacggcgat atcgtacgag ttgtacaagt aggcaaatac agcattgaac
     2701 tatgtggcgg tgtccatgtg cgtaatacag ctgatattgg tctattcaaa atcgtatccg
     2761 aaacaggtat cggagcggga actagacgta tcgaagctgt tactggcaaa gaagcctatc
     2821 gctttgtaac agaacaagaa aacacattaa aacaggcagc gagtctacta aaaacaacaa
     2881 ccaaagaaac accgcaaaaa gtagaacaat tacaagctga cttacgtgaa gtgaaacgcg
     2941 agaatgaatc actattaagt aaattagcga gtgcagcaag cgcggatatt tttgaatcac
     3001 cagaagaaat cggcggcgta aaagtgattg caaaacaagt aaatgcaaaa gatatgaacc
     3061 aattacgtca attcgtggat aactggaaag ataaaaaaat tggaggcatt cttgttttag
     3121 gcgctgttca aggcgataaa gtaaacttaa tctccgcagt ctctgaagaa gcaatcaaag
     3181 caggttacca tgcaggtaaa ttattaaaag aagtggcaac acgttgcggc ggtaatggtg
     3241 gtggacgtcc tgatatggca caagctggcg gtaaaaatcc agcagaacta ggaacagccc
     3301 ttgattacgt ttctacttgg gtaaaagaac aacaagcata aatttcatca aagtgcctca
     3361 tttttctttg ttatttccgt tcacatagtg taaaatgaaa ggagatacat gaaggaatga
     3421 ggtgcttcga ttatggattc aaaagatcaa acaatgtttt acaacttcgg cgatgattca
     3481 attgaagaag atgtaaaaaa attaatgaaa caagtctacg ttgctcttga agaaaaaggc
     3541 tataatcccg taaatcaaat cgttggctat ttactttcag gcgatccagc ttatattcct
     3601 cgtcacaagg atgctagaag tatgatacgt cgtttagaac gagatgaaat tatcgaggaa
     3661 cttgtcaaag cgtatctgaa aaataacgaa attggtgaga aatgagaata atgggtttag
     3721 atgtcggctc gaaaacagtc ggcgtagcga taagtgatcc acttggttgg accgcacaag
     3781 gtgtggaaac cattcagatt gacgagaata gaaagcaatt cggctatgac cgcgtaaaag
     3841 agctcgtgct tgaatacgaa gtggaaaaag tcgtagttgg actacctaag aatatgaata
     3901 acactattgg acctcgtgct gaaagttcca aaatatatgc tgaagtactt gagtcaagaa
     3961 ttggactccc tgttgtactt tgggatgaac gtttgaccac ttctgccgct gaaagaactt
     4021 tgattgaagc agacgtttcg cgtaaaaaac gaaaagaagt gattgataag ttagctgcag
     4081 taatgatttt acagtcctat ctggacacta ctaattaatt tgaggtgaat ttaatggcag
     4141 aagaacataa ccataatcat gaagaagaaa atattatttg gatcacaaac gaagaaggaa
     4201 aagaagaagc ttacgaaatt ctttttgatt ttgattccga agactttgac aaatcttatg
     4261 ttttatattt cccggctggc aaaggggaag acgaagaaat cgaaatcctt gcatctagct
     4321 atatccaaga tgaagaaggc aaacaaggtc aacttaaacc agttgaaaca gatgaagaat
     4381 gggatatgat tgaagaaatc cttgcaacat tcttagctga cgaagacgaa gaataaaaat
     4441 taaaaaagca tgtcttgaca aaaactgtca agacatgctt tttattttgc atttctagcg
     4501 cgtttattcc atactttgta agcaaggtag acaacgatgg caataaccaa agctaacatt
     4561 aaatagctaa ttggtcgcgt atatttttcc acaacgctcc aattggaacc taatgaataa
     4621 ccaagccatg tcagaaaaat attccacgga atgcagccta aaatcgtata tataacaaat
     4681 ttccagacat tcattttggc aattcctgcc ggtaaagaga taaatgttcg gatgactggc
     4741 aaaactcggc cgaaaaatac agctcttgct ccgtaacgac caaaccataa ttccgcttta
     4801 tccaagtgct tcacatttaa gaatatatac tttccgaatt tcaatactaa agctctacca
     4861 ccgaatttac cgatgtagta agcaatcagt gaaccgacta agttaccagc aataccagca
     4921 aatacaacga gccagaagtt aagtttcccg gcttccgcca taaatccacc gaatagcata
     4981 ataacttcac ttggtagcgg tatacaaaca ctttcaatca gcattccgag gaaaataccc
     5041 cagtgcccaa gcgagtctac taaccacatc gtgaaatctt gcaaactttg tattaatgta
     5101 tgtaacatcc aaaagactcc ttcaatattt aattaattgg cagaagcaag tctttgactg
     5161 attctgtctt gttcgttaaa tcacgctatt tattataccg aaaaaacata aaaacgtc
//
LOCUS       DABQVC010000191         5216 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.191,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000191 DABQVC010000000
VERSION     DABQVC010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5216
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.191"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            153..2237
                     /locus_tag="IBJ56_002437"
     CDS             153..2237
                     /locus_tag="IBJ56_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HAM3418682.1"
                     /translation="MSKNGNFLKKVGLAFLSILIVASTIFQTTVVKAATSYGSQFLNT
                     VELLDKDGVPQTDFGYYDNMDVHYTWSIPNSTNVKAGDTMDFTLPSQLALATDLAFDV
                     KDSNGQVVGTATVKRATNQVTLVFSDYVEKHSDIKGELDFWTTFNQKVITGNETVDLE
                     FPLENGTTQIDVKVGEKTPVSPTETLFKYGWVDASNPSLIHWVIRVNYAKVNIPNAVF
                     TDIIGSKQTLNFDSIKAFHGTYSADRIFTAGAAISSTNFSATSDGFSVALGDLTDSVQ
                     ISYTTTATDGGKSTQYDNTAKLAGTDFVPKQTSTWTPASGGGGEGGGTTGSVTLTKED
                     AKTKATLEGAEFKLVDSKGTVLQENITTNASGQLSIADLKFDTYQLIETKAPTGYKLD
                     TTPVEFTIGENNQAITVTKENTLNTGSVELTKLDSATKATLAGATFELQDKEGNTLQT
                     GLTTDENGVLKVTDLVPGSYQFIETSAPTGYKLDNSPVSFEIIASETDQIVKVTKENT
                     LEVGSVELTKLDSATKATLAGATFELQNKEGNTLQTGLTTDENGVLNVTDLVPGTYQF
                     VETKAPIGYELDTTPVVFEIIAGETDQPVKVTKENTLVPPTPVPPTPVPPTPIPPTPL
                     PPVPYEPTVPPTKPAVPVTPKKSENSEDSPKTTQIRITKSLPKTGDTNSFAGLGVILI
                     ALSLSGLLLKRK"
     gene            2428..4179
                     /locus_tag="IBJ56_002438"
     CDS             2428..4179
                     /locus_tag="IBJ56_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HAM3418683.1"
                     /translation="MKKRTTMTSNLKKFGLAFLSVILLVNVLFQTNFVKAATNYGSDF
                     LKTVELLDADGNPQTDFGYYDSIKVHYTWEIPNSTNVKEGDTMEFVLPPELKIVTDLD
                     FSLKDHDGNTVGHVIAKKSTGQVVITFTDFVEKNSNISGYLDFWTNWDKSLVEGNENV
                     PVEFPVNGTTETIDVGVGGKNQIDPDESLYKYGWANAEHPELIQWVVRVNYSKQNIQN
                     AVYEDFIGPKQVVDFNSIKAFHGEFDPDDNFTPGAEVPSSAITQTTEGFKVDLGNLTD
                     SVKISYYTTSTDNGASPNYTNKGQLTGDNFIKQEIEVATPTSGGGGGGEGTTGSVELT
                     KTDDSSQKNPLEGAEFKLVNGAGTIVQTGLKTNIDGKLTISNLKYDTYQLIETKAPQG
                     YVLDASPVEFTIDDAHQSLFLSKENSAIKGSVSLEKVDHDTQNLLADAEFELQDKDGN
                     TLQPNLKTDKMGKLTVTDLLPGEYQFVETKAPTGYILDATPVKFKISTEALNVTVTKE
                     NTKKPEIPKVPVPPKTPEQPDKPDKPDKPEQPDKIISADSKRTTLPKTGDTPLVNGWG
                     ILLVAISASGLIALRRK"
     gene            complement(4223..5059)
                     /locus_tag="IBJ56_002439"
     CDS             complement(4223..5059)
                     /locus_tag="IBJ56_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HAM3418684.1"
                     /translation="MNESNGSMELYLREHTEEIINKWLSKIYENENTYTSFVYSPRYK
                     DELRADSEQTADLIISYFAGKKAFFEKLDKWLDNMYARRMENEVPLPEVITTLDKLRR
                     EFVSAVGDFCIHNDEVSKCDFSSSLSMVNHGFDRINEAFSAMYYNDIVKHLEQQHRLI
                     EEISTPVISITDKLAILPLMGSVDRERAEKLSEITANKCVHLGVEQLCIDLSGITYFD
                     DALGEMLTNLVTMLKLLGVEAFISGIQPKMAQQINRVELNLSIPAYHSLKAVLQDQTR
                     TI"
BASE COUNT         1862 a         1012 c          982 g         1360 t
ORIGIN      
        1 tatgataaat agccctaaaa aaagtcacta aaagttcata aagtgggtgt tttaggagca
       61 gtacttccga aaagtgatat agcttggagt tactcaattg tcatatgata tgtgataata
      121 acaaaacttc attagtaaag gatgaatttg taatgagtaa aaacggaaac tttttaaaaa
      181 aagttgggtt agctttctta agtattttaa tcgtcgctag cacaatcttc caaacaacag
      241 ttgtgaaagc ggcaacgagt tatggttctc agtttttaaa cacagtagaa ctcttagaca
      301 aagacggtgt gccgcaaaca gattttggct actatgacaa tatggatgtg cactacacat
      361 ggtctattcc gaattcaaca aacgtaaaag ctggagacac aatggatttc acactgccaa
      421 gccaattggc gctcgcaact gatctcgctt ttgacgtgaa agatagtaat ggtcaagtag
      481 ttggaacggc cactgtaaaa agggcaacca atcaagttac cctcgttttc agtgattatg
      541 tagaaaaaca ttccgatatt aaaggagaac tggatttctg gaccactttt aaccaaaaag
      601 taattactgg aaatgaaaca gttgatttag aatttcctct tgaaaatgga acgacacaaa
      661 tagatgtaaa agttggtgag aaaaccccag ttagcccgac agaaacgctt ttcaaatatg
      721 gttgggtgga tgctagtaat ccaagtctga ttcattgggt tattcgagtg aactacgcca
      781 aagtgaacat tccaaatgcc gttttcacgg atatcatcgg ctcaaaacaa acattaaatt
      841 ttgattctat caaagctttt catggaactt attccgcaga tcggatattt acagcaggcg
      901 cggctatttc cagcaccaat ttttccgcaa caagtgacgg gtttagtgta gcactaggag
      961 atttaacgga ttctgtgcaa atttcttata caacaaccgc aacagatggc gggaagtcta
     1021 cccagtacga taataccgct aaactagccg gaactgattt tgtacccaag caaacgtcca
     1081 cttggacacc tgcatcaggc ggaggcggtg aaggcggcgg gacaaccggt tcagtaacac
     1141 tcacgaaaga agatgcgaaa acaaaagcaa ccctcgaagg tgcggaattc aagttggtgg
     1201 attcaaaagg cactgtgcta caagaaaaca ttacaacaaa tgcgagcgga caacttagca
     1261 ttgctgatct gaaatttgac acctaccaat taatagaaac aaaagccccg acaggctaca
     1321 aacttgatac aacaccagtt gaatttacta ttggtgaaaa taatcaagca attaccgtga
     1381 caaaagaaaa tacgcttaac acaggctccg tggaactaac aaagctagac tcagcaacca
     1441 aagcaaccct agccggagca acattcgaat tacaagataa agaaggaaac acattacaaa
     1501 ctggtttaac tacagatgaa aatggcgttc taaaagtaac tgatttagta cccggcagtt
     1561 accaatttat cgaaacaagt gctccaacag gctacaagtt agacaacagt ccagtaagtt
     1621 ttgaaatcat cgcaagcgag acagatcaaa tagtaaaagt aacaaaagaa aacacactag
     1681 aagttggctc cgtggaacta acaaagctag actcagcaac caaagcaacc ctagccggag
     1741 caacattcga attacaaaat aaagaaggaa acacattaca aactggttta actacggatg
     1801 aaaatggcgt tttaaacgta actgatttag taccaggaac ataccaattt gtcgaaacaa
     1861 aagccccaat tggatatgaa cttgatacga cgccagttgt ttttgaaatc atcgctggtg
     1921 agactgacca gccggtaaaa gtaacaaaag aaaacacatt agtaccgcca acaccagtac
     1981 caccaacacc agtgccacca acaccaatac cgcctactcc gttaccacca gtaccatacg
     2041 aaccaactgt gccaccaaca aaaccagcag taccagttac gcctaagaaa tcagaaaaca
     2101 gcgaggatag tccaaaaaca acccagataa gaataactaa aagtcttcct aaaacaggag
     2161 atacaaatag ttttgctggc ttaggagtaa tcctaatagc cttgtcatta agtggtcttc
     2221 tgctgaaacg aaaatagaaa aaacaggctt agataattat ctaagcctgt tttaattagg
     2281 ttgtttaaga attgcaattg tcacaaaatg ttcacaatta gaaggctttt tttgtgaagg
     2341 agaaccgatt tttagaaaaa ataatgtata atcactatga attagcaata tattatgatt
     2401 gaaattaatt aaaaaaggat ggtttttatg aagaaacgca cgacaatgac gtctaatcta
     2461 aagaaattcg gattagcctt tcttagcgtt atcttgcttg taaacgtttt atttcagact
     2521 aactttgtta aagcagcaac taattatggc tccgattttt tgaaaactgt ggaattatta
     2581 gacgcagatg gcaatcctca aacggacttc ggttattacg acagcatcaa ggttcactat
     2641 acttgggaaa tccccaattc aactaatgtg aaggaaggcg acacaatgga atttgtgtta
     2701 cctccagagc tgaagatagt tacagattta gacttttctt tgaaagatca cgatggcaac
     2761 acggtaggtc acgtgattgc taaaaaatcg actgggcaag tagttattac atttacagac
     2821 tttgttgaaa aaaattccaa tattagtgga tatctcgatt tttggactaa ttgggataaa
     2881 tcattagtag aaggaaatga aaatgttcca gttgaatttc cagtaaatgg taccacagaa
     2941 acaattgatg tgggcgttgg tggtaaaaat caaattgacc cggatgaaag tttatataaa
     3001 tacggctggg ctaatgctga acatcctgag cttatccaat gggtcgttcg agttaactat
     3061 tcgaaacaaa acattcaaaa tgccgtttat gaagatttta ttggaccaaa acaagtcgtt
     3121 gattttaatt ctatcaaagc attccacggt gaatttgatc cggatgataa cttcacgcca
     3181 ggagccgagg taccatcatc ggcaattact caaacaacgg aaggattcaa agtcgaccta
     3241 ggaaatttaa cagattctgt caaaatttca tactatacaa cttctaccga taacggagca
     3301 tcacctaact acacaaataa agggcaattg acaggagata actttatcaa gcaagaaatc
     3361 gaagtcgcga caccaacatc aggtggtggc ggagggggag aagggacaac cggatctgtt
     3421 gaattaacga aaacagatga ttcgtctcaa aaaaatccat tagaaggtgc cgagtttaaa
     3481 ttagtcaacg gagcaggaac gatagtccaa acaggactaa aaactaatat cgatggtaaa
     3541 ctaactattt caaatctgaa atatgataca taccagctaa tcgaaacaaa agctccacaa
     3601 ggatatgtgc ttgatgcgtc tccagtagaa tttacaattg atgacgcgca ccaatcatta
     3661 tttctatcca aagaaaactc tgccatcaaa ggatccgttt cactagagaa agtcgaccac
     3721 gacacacaaa acctactagc tgatgccgaa tttgaactac aagataaaga tggcaacaca
     3781 ctacaaccaa accttaaaac agacaaaatg ggcaaactaa cggtgacgga tttacttcca
     3841 ggcgagtatc aatttgtcga aacaaaagcg ccaacaggct atattttaga tgctactcca
     3901 gtcaaattta aaatcagcac agaggcacta aacgtaaccg taacaaaaga gaacacgaaa
     3961 aaaccagaaa taccaaaagt accagtacca ccaaaaacac cagaacaacc ggataaaccg
     4021 gataaaccgg ataaaccaga acaaccagat aaaataataa gcgcagatag caaacggacg
     4081 actttaccaa aaacagggga tacaccactt gttaatggtt ggggaatact gctcgtagcc
     4141 atttcagcga gtggattaat tgcgcttaga agaaaataat taaaaaaacc gtaagcgata
     4201 atacaatcgc ttacggtttt tcttatatag ttctagtttg atcttgtaag acagccttta
     4261 acgaatgata ggcaggaata gataagttta attcaacacg attaatttgt tgtgccattt
     4321 ttggttggat gccagaaata aatgcctcga caccaagaag tttaagcatc gtcactaagt
     4381 tggtaagcat ttctccaagt gcatcatcaa aataagtaat tcctgataaa tcaatacaca
     4441 attgttccac gcctaagtgt acgcatttgt ttgccgtgat ttcggataac ttttctgctc
     4501 tttcacggtc gacgctcccc atcaaaggaa ggatcgctaa tttgtccgtg atagaaatga
     4561 cgggtgtgct aatttcttct attaaacgat gttgttgttc taaatgtttg acgatatcat
     4621 tgtaatacat ggcggagaag gcttcgttta tccggtcaaa cccgtgatta accatggaca
     4681 gacttgatga gaaatcacat ttagacactt catcattatg aatacaaaaa tcaccaacag
     4741 cagaaacaaa ttcacggcgt agtttatcaa gggtggtaat aacttcaggt aatggtactt
     4801 cattttccat gcgacgcgcg tacatgttat ccagccattt gtcgagtttc tcaaaaaatg
     4861 cttttttacc agcgaaataa gaaatgatta agtccgctgt ttgttcactg tcagcgcgca
     4921 gttcatcttt gtaacgcggc gagtaaacaa aactagtata cgtgttttcg ttttcataaa
     4981 ttttggatag ccacttatta ataatttctt cggtatgttc tcttaaatat agctccatac
     5041 ttccattcga ttcattcata ccagacaacc cctttaagtc taagtataat aactactttt
     5101 ctttattcta tgctcaaaac gttgtactgt ccaattaaat tttagaaaaa taacgaattt
     5161 attgaaattg taatattagt taaccaatcc aacgttattt ttttgttaaa attccg
//
LOCUS       DABQVC010000192         5200 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.192,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000192 DABQVC010000000
VERSION     DABQVC010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5200
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.192"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..110)
                     /locus_tag="IBJ56_002440"
     CDS             complement(<1..110)
                     /locus_tag="IBJ56_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3418685.1"
                     /translation="MFNEKVKEMIRELDKYKLQDKWVRFEKLSKNKKIDS"
     gene            complement(248..1066)
                     /locus_tag="IBJ56_002441"
     CDS             complement(248..1066)
                     /locus_tag="IBJ56_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1963 domain-containing protein"
                     /protein_id="HAM3418686.1"
                     /translation="MEQLFDILPSEWAERFLETEKERIELHFKDVGKLSLLQSKAGGR
                     GYLPREHGYPVTEEGKPLSLLTQINFSEMPQMENYPEFGLLAFYVDYQDDLYGLNFEN
                     PTSQEGFRVFFFDDLGSESLTAEEQDAFFEDVAKSDFYPVVNGEFKIAGQVSDQILLQ
                     DSFDFENEFGSNFYELADQIFAEDEDKSEALYQLGKECSQIGGYPFFTQEDPRMYTEN
                     PHHDTLLFQLASEDFDESRMAIMWGDCGVANFFINKQDLINRDFSNIMYNWDCS"
     gene            complement(1151..2362)
                     /locus_tag="IBJ56_002442"
     CDS             complement(1151..2362)
                     /locus_tag="IBJ56_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAM3418687.1"
                     /translation="MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETT
                     WLHEAAAGTIEPEKLMYPLDKVVNNTKTTFIQDTVVKINKDEKTVTLDANGDISYDYL
                     LIALGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGG
                     AGFTGIEFLGELTNRIPELVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVLE
                     DRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVRGNSVIEASGFEAGR
                     GRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNLAKLVK
                     GETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGV
                     LASKGKFKFYK"
     gene            2812..3807
                     /locus_tag="IBJ56_002443"
     CDS             2812..3807
                     /locus_tag="IBJ56_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAM3418688.1"
                     /translation="MDEKTKIYDITIIGGGPVGLFAAFYAGMRNASVKIIESLPQLGG
                     QLSTLYPEKYIYDIPGYPAVRAQELVNNLIQQMKPFDPTIALEEAVQSVEKQVDGTFE
                     IITKKDTHYSKAVIITAGNGAFEPRRLDLPEAEQYEGKNIHYFINDLSRFSGRRVAVC
                     GGGDSAVDWALMLEKVASSVAIVHRRNAFRAHEHSVNNLEKSSIAIKTPFIPTEVLGN
                     GDKLTHITLQEVKGDTRETLEIDDFIINYGFVSSLGPIKNWGLELERNSIVVNSKMET
                     SIPGIYCAGDICTYDGKVKLIATGFGEAPTAVNNAMNFIDPKTRVQPMHSTSLFE"
     gene            3895..4524
                     /locus_tag="IBJ56_002444"
     CDS             3895..4524
                     /locus_tag="IBJ56_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3418689.1"
                     /translation="MNVLVIGANGKIGRLLVEKLAMEKGFFVRAMVRKAEQVSELEKL
                     GAKPIIADLKKDFHYAYDEIEAVIFTAGSGGHTPASETINIDQNGAIKAIETAKEKGV
                     RRFIIVSSYGADNPENGPESLIHYLKAKQAADEELKRSGLDYTIVRPVGLSDDPATGK
                     IAEVSEKPTTTIPRADVADFISEALSEKSSFYKTYTIESGDTPIKHFFD"
     gene            complement(4570..4803)
                     /locus_tag="IBJ56_002445"
     CDS             complement(4570..4803)
                     /locus_tag="IBJ56_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzB family protein"
                     /protein_id="HAM3418690.1"
                     /translation="MNPIVEFCVNNLASGADAAFAKLDADDSLDVIEYDCLTYCDLCA
                     TSLFALVDGEVVRGETAEELVANIYTFLEENPF"
     gene            complement(4825..5151)
                     /locus_tag="IBJ56_002446"
     CDS             complement(4825..5151)
                     /locus_tag="IBJ56_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzD family protein"
                     /protein_id="HAM3418691.1"
                     /translation="MVNEAKLYVYGSTTICASCVGAPSSKETEEWLRAAIGRKFSGQP
                     FVVEYVDIFNPPNEKALADMANKIVEEDYMYPVIVVDGEIIAEGNPRLKDIYQVMTDR
                     GYLATM"
BASE COUNT         1565 a         1134 c          889 g         1612 t
ORIGIN      
        1 tcactatcaa ttttcttgtt tttagaaagt ttttcaaagc gaacccattt atcttgtaat
       61 ttatatttat ccaattctcg gatcatttct tttacttttt cattaaacaa atgtatctcc
      121 tcctactagt tttacttagt ttagcaggat tagagttaag acctatgtgg aaattacaca
      181 ctattttggt atctttatat agattttatt acagtggata tatctatatt caaaaaatag
      241 tacttcttta tgagcaatcc cagttataca taatgttaga aaaatcacga ttgattaaat
      301 cttgtttatt gatgaagaag ttcgcaacac cgcagtcgcc ccacataatt gccattctac
      361 tctcatcaaa atcctcagat gctaattgaa acaaaagcgt gtcatgatgc gggttttctg
      421 tatacatacg cggatcttct tgtgtaaaaa aaggatatcc gccaatttga ctacattctt
      481 tacccagttg atataatgct tcagatttat cttcatcctc cgcgaaaatt tggtcagcca
      541 gctcataaaa attacttcca aattcatttt caaaatcaaa gctatcttgt aatagaatct
      601 gatctgaaac ttgcccagct attttaaact caccattaac aacggggtaa aagtccgact
      661 ttgctacatc ttcaaaaaat gcatcttgtt cttcagcagt taagctctca cttcccaagt
      721 catcaaagaa aaacactcga aaaccttctt ggctcgttgg attttcaaaa ttaagtccgt
      781 acaaatcatc ttgataatcc acataaaaag cgagtaagcc aaattccgga taattttcca
      841 tttgtggcat ttctgaaaaa ttaatttgtg ttaataaaga cagcggttta ccttcttcgg
      901 tcactggata gccatgctct ctcggcaagt aaccacgccc accagcttta ctttgcaaca
      961 atgaaagctt accaacatcc ttaaaatgca gttctatacg ctctttctct gtttctaaaa
     1021 atcgttcggc ccattcacta ggaagtatat caaaaagttg ttccatgact taccttcttt
     1081 ctttttttct aattataaca tgaaaaaagc gccatatctg acaaaagcag atacagcgct
     1141 tcttgagttt ttatttatag aatttgaatt tacctttact tgccaagacg cctgaaccac
     1201 caattagtaa tagcgcgcgg tcatcaatga cttttttcat aacggaagct ggatagcctt
     1261 tcaagttttt accgaaaacg acaccaattg catcgttatc gcctagagag caaactgttc
     1321 ctttttcatg ataaacaaag tcttgtagat ctgtttcgcc tttaactaat ttagctaagt
     1381 tcactgcagc cacatcggct tgttgcattg cgatttgggc agttggtggg aatggacggt
     1441 cgtttgctgg gttgatgatt agtgagcagt caccaacaat taaaatttcc tcgttaccag
     1501 gaacagttaa attgttgttt actttcacac gaccacgacc agcttcaaag ccagatgctt
     1561 caattacgct attgccacga acacctgcag cccaaataat ggttgctgct ttgatttcac
     1621 gaacttcatt ttcactttcc gcatatttta cgccatcagc ggtagcttct ttgactggtt
     1681 taccgacatg gaattctacg ccgcgatctt ccagtacacc aacaccataa tcaaccagtt
     1741 tcgcatcaaa ttgtggtaat acttttggag ctgcttccat acaataaatg cgcacttttt
     1801 cgcgaggcac atcgtactct ttcactagtt ctggaatgcg attagttaat tccccaagaa
     1861 actcaattcc agtaaagcca gcgccaccaa cgataattgt taataattca tcgcgtggat
     1921 ctgttttcca tttagcaaat tgcgcttcaa tgtgcgcacg gatttttttg acggattcta
     1981 cacttgtaat agtgaaggca tattctttca aaccactgat tccaaatgtt tctgcttctg
     2041 acccaagagc aattaataaa tagtcatagc tgatatcgcc atttgcatct agtgtgactg
     2101 tcttttcgtc tttattaatt tttactacag tatcttggat aaatgtagtt ttcgtattgt
     2161 ttacgacttt atcaagtgga tacattagtt tttctggctc aattgttcca gctgctgcct
     2221 cgtgtaacca agtcgtttcg tggtgatagt cattcttatt cactagaacg atttcggctt
     2281 ccaagtttct ttgttgtaac ttgcgtaaag tttttagtcc cccgtatcct gctccgagaa
     2341 tgacaatttt tggtttactc atctgttatc acatctactt tcccttatat ttttcttcac
     2401 aaaaaaaatt gcattaagaa tttcttactg cacctatgta gattgcgcta aaaatctact
     2461 gcaaacaatg aataaagtga aaatggtaag taccaatata ttccctattt cacagcttac
     2521 aaactatatc atagactttt tcacattcat tttcaagaaa gcgaactcaa gggtttaagc
     2581 ttctttgtag catggttcga gtggtatacg atttttttca caataaagct ttgagatgac
     2641 ttggttttcg caaaaatctt ttatttgata cataattggt ctagttcatt ttttccatat
     2701 tttaatggag acaatcccgt aaacattctt tttcaacaat atatgctaaa atatgcttat
     2761 tgcaacttta gcgatttcat agggaaatta cgaactaggg ggtgatgtat tttggatgaa
     2821 aaaacaaaaa tttatgatat cacgatcatt ggtggtggac cggttgggct atttgctgcg
     2881 ttttatgccg gaatgcgcaa tgcgagtgtg aaaataatag aaagtttacc gcaattaggt
     2941 ggacaacttt ccacgcttta tcccgagaaa tatatttatg atattccggg ctatcctgct
     3001 gtacgcgcac aggaacttgt taataatttg attcaacaaa tgaaaccatt tgatccaact
     3061 attgcgctag aggaagcggt tcaaagcgta gaaaaacaag ttgatggcac atttgaaatc
     3121 atcacgaaga aagatacaca ttacagtaaa gctgttatta ttaccgctgg aaatggcgca
     3181 tttgaaccaa gacgtttgga tcttccagaa gcagagcaat acgaagggaa aaacattcat
     3241 tatttcatca atgatttaag tcgcttttca ggtcgtcgcg ttgccgtttg tggcggtggg
     3301 gattccgcag tggactgggc actcatgctt gaaaaagtag ccagttctgt cgcgatcgtt
     3361 catcgtcgca atgcttttcg tgcgcacgaa catagcgtga acaatttaga aaaatcttcc
     3421 attgccatca aaacaccatt tatcccaact gaagtactcg gtaacggcga taaattaacg
     3481 catattactt tgcaagaagt caaaggtgat acaagggaaa cactggagat tgacgatttc
     3541 atcattaact atggtttcgt ttcttcgctt ggtccaatta aaaattgggg cctagagcta
     3601 gaacgcaatt cgattgtcgt taattcaaaa atggaaacga gtatcccagg aatttattgt
     3661 gcaggtgata tttgcacgta tgacggtaaa gtaaaactaa tcgcgaccgg attcggtgaa
     3721 gctccaacag ccgttaataa cgcgatgaat ttcattgatc caaaaacacg cgtgcaacca
     3781 atgcactcca catctttgtt cgaataacaa ccgaaaccac gaggcgactt gtggttttat
     3841 tttttactca ccgggaaaag ttctttgtag atatttttta ggaggagatt agcaatgaat
     3901 gtactcgtaa ttggcgcaaa tggcaaaatc ggccgtcttt tagtagaaaa actcgccatg
     3961 gaaaaaggct ttttcgttcg agcaatggtt cgaaaagccg aacaagtaag cgaacttgaa
     4021 aaacttggcg ctaagccgat tatcgccgat ttaaaaaaag atttccacta tgcctatgat
     4081 gaaattgaag ctgttatttt cacagcagga tccggtggtc atacgcccgc ttccgaaact
     4141 atcaacattg accaaaacgg cgccatcaaa gccatcgaaa ctgctaaaga aaaaggtgta
     4201 cgtcggttca tcattgttag ctcttatggc gccgacaatc cagaaaacgg tcccgaatcc
     4261 ctcatccatt atttaaaagc caaacaagca gccgatgaag aactaaaaag aagcggtctc
     4321 gactacacca tcgtccgccc agttggcctt tcagatgatc cagctactgg caaaatcgct
     4381 gaagtttccg aaaaacctac aacgactatc ccgcgcgctg atgttgcaga ttttattagt
     4441 gaagctttat ccgaaaaatc tagtttctat aaaacctata ccatcgaaag tggcgacaca
     4501 cccattaaac atttttttga ttaataaaaa gcgatgagcc aaattacgcg ctcatcgctt
     4561 ttttctatat taaaacggat tctcttccaa aaatgtatat atattcgcaa ccaattcttc
     4621 tgctgtttct ccgcggacca cttccccgtc cactaaagca aacaaactcg tcgcgcataa
     4681 atcacaatat gtcagacaat catattcaat cacgtctaaa ctatcatccg catctaattt
     4741 cgcaaaagct gcatctgccc cgctcgccaa attattcacg caaaattcca caatcggatt
     4801 catttccact tgcctcctag actgttacat cgttgccaag taaccacggt cggtcattac
     4861 ttgataaata tctttcaacc gaggattgcc ttccgcgata atttcaccat caaccacaat
     4921 gactgggtac atataatctt cctcgacaat tttattcgcc atatccgcta aagccttctc
     4981 attcggcgga ttaaaaatat ccacatactc caccacaaac ggctgccctg aaaacttccg
     5041 accaattgca gctcgaagcc attcctctgt ttccttcgag gatggcgctc cgacacaact
     5101 cgcacaaata gtcgttgaac cataaacata taatttcgct tcatttacca tcacgcttca
     5161 cctcactatt attgtacaaa aacccaccaa aaaaagcgac
//
LOCUS       DABQVC010000193         5155 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.193,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000193 DABQVC010000000
VERSION     DABQVC010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5155
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.193"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..81
                     /locus_tag="IBJ56_002447"
     CDS             <1..81
                     /locus_tag="IBJ56_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine acetyltransferase"
                     /protein_id="HAM3418692.1"
                     /translation="EFFVDGTYHDAIRMCIFQHQYREMDI"
     gene            223..1191
                     /gene="mvk"
                     /locus_tag="IBJ56_002448"
     CDS             223..1191
                     /gene="mvk"
                     /locus_tag="IBJ56_002448"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HAM3418693.1"
                     /translation="MATGIGTAKMILCGEHAVVYGEPAISVPFTQAIVTTNVENSTKT
                     KFSSAFFSGDLDDMPDFLAGIKALVVDVLNEIGKGECVSIHVVSGVPIGRGLGSSAAV
                     ATSIARGLYKYFNQELDSKKLLAIVNAAEKIAHGNASGVDAITVVSEKPVWYERDRKL
                     EIMHFSKKITFVVADTGVPSETRDAVKDVQALYKENQTEIGKIIHQLGDISREIKTHL
                     EGDADTVKIGAAMNKAQSYLETLTVSDSSLEKLIEVARSSGADGAKLTGGGRGGCIIA
                     VAKNQEIAEQITKELHNAGAAQEWIFTIGEGSYESDSHRTHECGAN"
     gene            1148..2119
                     /gene="mvaD"
                     /locus_tag="IBJ56_002449"
     CDS             1148..2119
                     /gene="mvaD"
                     /locus_tag="IBJ56_002449"
                     /EC_number="4.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HAM3418694.1"
                     /translation="MKATAIAHTNVALIKYWGKRDEHLILPANSSLSFTVDKFYTKTT
                     VEWDGNLAQDTFILNNEHKTDAKVARFIDKMREEFGISAKAKITSENHVPTAAGLASS
                     ASAFAALALAGSSAAGRKDTKEYISRLARFGSGSASRSVFGDFVIWEKGELADGSDSF
                     AVPFTNKLCDKMSLVVAVVSDKEKKVSSRDGMRLTVETSPFFEKWVSAAETDLEEMKQ
                     AILDEDFIKVGEITERNGMKMHATTLGAEPPFTYFQPKSLEIMDAVRELRENGIPAYF
                     TMDAGPNVKVICERENENIVADKLSGLAKNVLICHAGKEASVVSDEK"
     gene            2100..3179
                     /locus_tag="IBJ56_002450"
     CDS             2100..3179
                     /locus_tag="IBJ56_002450"
                     /EC_number="2.7.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomevalonate kinase"
                     /protein_id="HAM3418695.1"
                     /translation="MYQMKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTL
                     EDSERNELWIPHYENPVSWPIGGELKPDGEHWTFTAEAINIATTFLKSEGIELTPVKM
                     VIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNG
                     SCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSV
                     GWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIK
                     ENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKTKELAE
                     KLVNEWEKLGIKHLPFHTGRVQITE"
     gene            complement(3272..3466)
                     /locus_tag="IBJ56_002451"
     CDS             complement(3272..3466)
                     /locus_tag="IBJ56_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418696.1"
                     /translation="MKRNKLKIIFRIIELVLGILIIIATSVLYFMDIISGGASGVISA
                     VGMGIFIHANNLSKKDNTTE"
     gene            complement(3484..4782)
                     /locus_tag="IBJ56_002452"
                     /pseudo
     CDS             complement(3484..4782)
                     /locus_tag="IBJ56_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929138.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
     gene            complement(4801..>5155)
                     /locus_tag="IBJ56_002453"
     CDS             complement(4801..>5155)
                     /locus_tag="IBJ56_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3418697.1"
                     /translation="LKRNVQKGMISLIAIMMFLSMFSFTNLNSIKTVEAATTAYNTIE
                     YNKSVNLDANIAYPETNAFWSAPYYSEGSTFISSATAPSYAKKDVKLIREAKTERGIY
                     YQVKLGDKIIGWLDK"
BASE COUNT         1672 a          871 c          969 g         1643 t
ORIGIN      
        1 gagtttttcg ttgatggaac ttatcatgat gctattagaa tgtgtatttt ccaacatcaa
       61 tatcgagaaa tggatattta aaaggtgatt ggcgcgggaa aagttgcgcc aatcattgtt
      121 ttgggtcaaa aaaagttcta taataaggtt ttagtgaaaa aattatggta tcatgaagta
      181 ttaaagtttg tattattttg atggagaaag gattggcgtg cattggctac aggcattggg
      241 acagctaaaa tgatattatg cggagaacat gcagttgtat acggagaacc ggcgatttca
      301 gtcccattta cacaagcaat agtaacgaca aatgtagaaa attctacaaa aaccaaattt
      361 tcttcggcat ttttttcagg tgatttagat gatatgcctg atttcttagc aggaatcaaa
      421 gcattagttg tagatgtttt aaatgagatt ggaaaaggcg aatgcgtttc tatccatgta
      481 gtttcaggtg ttccaattgg acgaggttta ggttcaagtg ccgctgtagc aacaagtatt
      541 gcgcgtggct tatataaata ttttaatcaa gaattagact cgaaaaaatt attagccatt
      601 gtgaatgcgg cagaaaaaat tgctcatggc aatgctagtg gtgttgatgc tatcacggtt
      661 gtgagtgaaa aaccagtatg gtatgagcga gatcgaaaac tagaaattat gcatttttca
      721 aaaaaaatca cgttcgtagt agcagatact ggagttccaa gtgaaaccag agacgcggtg
      781 aaggatgttc aagctttata taaagaaaat caaacagaaa ttggtaaaat aattcatcaa
      841 ctcggcgata tttcccggga aataaagact catttagaag gcgatgcaga tactgtgaaa
      901 ataggtgctg caatgaataa ggcacaatct tatttagaaa ctttgacagt aagtgatagt
      961 agtttagaga aattaataga agtagctaga agtagtggtg cagacggggc aaaacttaca
     1021 ggtggcggta gaggtggatg tattatcgct gtagcaaaaa atcaagaaat cgctgaacaa
     1081 ataacgaagg agcttcataa tgctggagct gcacaagaat ggatttttac gattggagaa
     1141 ggtagttatg aaagcgacag ccatcgcaca cacgaatgtg gcgctaatta aatactgggg
     1201 aaaacgcgat gaacacttga ttctacctgc aaacagtagt ttatccttca cggtagataa
     1261 attttataca aaaacaacgg tagaatggga cggaaattta gcccaagata catttattct
     1321 aaataatgaa cacaaaacgg atgcaaaagt agctcgtttt atagataaaa tgcgtgaaga
     1381 attcggtatt tcagcaaaag caaaaatcac ttccgaaaat cacgttccaa ctgcggccgg
     1441 gcttgcttca tcggcttctg catttgcagc tcttgcactt gctggatcta gcgctgctgg
     1501 cagaaaagac acaaaagaat atatttccag actggctcgt ttcgggtctg gttctgcttc
     1561 tcgttccgtt ttcggagatt ttgtcatttg ggaaaaaggc gaactcgcgg acggtagtga
     1621 ttcatttgca gtacctttca ccaacaaatt atgtgacaaa atgtctcttg tagtcgcagt
     1681 cgtttcggat aaagaaaaga aagtttctag tcgggatgga atgcgcctaa ctgttgaaac
     1741 atcaccgttt ttcgaaaaat gggtttctgc tgctgaaaca gacttggaag aaatgaaaca
     1801 agctattttg gatgaagatt tcatcaaagt gggcgaaatc acagaacgaa acggaatgaa
     1861 aatgcatgcg acaacgcttg gtgccgagcc tccatttact tattttcaac cgaagtccct
     1921 tgaaataatg gatgctgtta gagaattacg agaaaatggt ataccggcct attttacaat
     1981 ggatgctggt ccaaatgtta aagttatttg tgagcgtgaa aatgaaaata tcgtagcaga
     2041 taagttgtca ggtttggcta aaaacgttct aatttgccac gctggtaagg aagcgagtgt
     2101 tgtatcagat gaaaaataaa ctacaggtta aaatacccgg aaaattatat gtagctggtg
     2161 aatatgcagt tgtagaatca ggtcatacgg ctattctaac tgcagttaat cgttatataa
     2221 cgctaactct tgaagatagt gaacgcaatg aattatggat tccacattat gaaaatccag
     2281 tttcatggcc aattggcgga gaacttaaac cagacgggga acattggacg tttacagctg
     2341 aagcaattaa tatcgcgaca actttcctga aatcagaagg aatcgagcta acgcctgtga
     2401 aaatggtcat tgaaacagaa ttaatcgacc aatctggcgc aaaatatgga ctcggttcca
     2461 gtgcagcggc tacagttgct gtaatcaacg cgctaatgac gaaattttat ccagaaatat
     2521 caatgcttaa aaaattcaaa cttgctgcac tttcgcattt agtagtacaa ggaaatggct
     2581 cttgtggcga cattgcttct tgtatgtatg gcggctggat tgcgtataca acgtttgatc
     2641 aagaatgggt gaagcatcgt ttggcttata aatcactcga atggtttatg aaagagccgt
     2701 ggccaatgct tcaaatcgaa acattggaag aaccagtgcc gactttttct gtcggttgga
     2761 cgggcacacc tgtaagtacc ggaaaactag tttcgcaaat tcatgctttt aaacaagaag
     2821 atagcaagaa ttaccaacat tttttaacta gaaataacga gattatgaag caaataattc
     2881 aagctttcca tacgaaagat gaggaattgc tttattcatc tattaaagaa aatcgtcgca
     2941 ttcttcaaga acttggaaca aaagctggcg taaatattga aacaagctta ctaaaagaac
     3001 tagcggactc agctgaaaac atgggtggcg caggaaaatc atctggctct ggtggcggag
     3061 actgcggaat agctttctcg aaaacgaaag aactagccga aaaactcgtt aatgagtggg
     3121 aaaagcttgg tattaagcat ttacctttcc atacagggag agttcaaatt actgaataat
     3181 ggggatatat aataaaagcc gaacaacttt taagtaaaag ttgttcggct tttgttttaa
     3241 tcatttaaaa taaagtaaca aactgaatct tttattcagt cgtattatct tttttagata
     3301 aattattcgc gtgtataaaa atacccattc caacagctga tataacgcca gaggctccac
     3361 cagaaataat atccataaaa tataatacag atgttgcgat aataattaaa attcccaata
     3421 ccaactctat tattcgaaat attatcttta gtttatttct tttcatgtat acactctttt
     3481 cttttattta gctgtagtta ttgtcgcagg gacatataat acacaattta aatttacacc
     3541 ttttccttta tcttttttac ccattcccca tgctaaacca ccaccaaata aactcaaaca
     3601 aacagcataa cgtgatgcga tttttattcc tttttttgct aaaaatttcc ccattcgttt
     3661 atttgcacct aatccaccta tcgtacctgc cccccaataa aaatcgttaa aatcaacaac
     3721 agctttatga gaaaattgga tttgcatacc ccaccatgta tatttagctt ttatataagc
     3781 ttttttagat gccttaagaa gttgatttgg ttcatcttca tagatttctt gaactattat
     3841 gtttccctca atatgtgttt ctgatagtgt ttcatcagcc tcgatttcag cattagtttg
     3901 atctatctgc ccttcaactt caacaaactc ttccgaagta agaacatctt ccgctttgtt
     3961 agacaataca aattcattgt tttctattgt tacataatca tttactttat caattaattc
     4021 ttccggaata attgattctt catcattttc tatagaatcc atagtttttt catcaattac
     4081 attttcagag tctatccaac caataggttt gttatcttgg cttattttaa cgtagttacc
     4141 caaattatca tcagaattac tttcatcaat attaacaaat tgttgagaat aattttgaga
     4201 attatttata gggttatttt tattatatgc atcagttata tttgaaaaaa tgtcgtttgt
     4261 actattactt atcaccatag cagtgtttga aggtattaat gagaaagccc tagtgtctaa
     4321 ccaaccaatt actttattat cataactaaa ttgataatat atttaccttg ttgttttggc
     4381 tcttctgatt atttcaactc tttttccttc ataattagaa gcaggcgcaa ttaatttact
     4441 atcggactga agataaggtg ttgaccatac tgcatgtcca ataactgtag atataactgc
     4501 catctgattg tactcttcat taaaatgtac ttggtcatag agtgttatgg ctcttgcatc
     4561 taaccaagct tttatattag gagttttggt ttcactaaat tgataataag tacctctttt
     4621 gttttctact tttctccaaa tagttatttc tttgttaaga taatcacttg ctggtccttt
     4681 taaagtagag tttatttgtc cgcaaggttg agtccatact gcatgtccag aagtgttagt
     4741 gattttcccg gtccttgagt aagcaatatc cgtagaaggc atttcataaa atttaaaagc
     4801 tcatttatca agccaaccaa taattttgtc tcccaatttt acttgatagt aaattcctct
     4861 ttcagttttt gcctctctta ttaatttaac atcttttttt gcataagaag gtgcagttgc
     4921 acttgatata aatgttgatc cttctgaata atatggtgca gaccaaaatg catttgtttc
     4981 tggatatgca atattagcat ctaaattaac tgatttattg tactcaattg tattgtacgc
     5041 agttgttgca gcctctacag ttttaataga atttaaattt gtaaaactga acattgataa
     5101 aaacatcata attgcaatta aactaatcat ccctttttgt acatttctct ttaac
//
LOCUS       DABQVC010000194         5131 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.194,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000194 DABQVC010000000
VERSION     DABQVC010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5131
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.194"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..371)
                     /locus_tag="IBJ56_002454"
     CDS             complement(<1..371)
                     /locus_tag="IBJ56_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HAM3418698.1"
                     /translation="MKHYVAVDIGASSGRLILGKLVNEKLQLEEIHRFKNGFTYRDGH
                     ERWEIDQLMQEIFIGLEKVKQLGISECVLGIDTWGVDYVLIGASGEKLADPISYRDKR
                     TLNAVQNLTSEYPREYIYKKTG"
     gene            complement(390..1658)
                     /locus_tag="IBJ56_002455"
     CDS             complement(390..1658)
                     /locus_tag="IBJ56_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3418699.1"
                     /translation="MAGSSTSKKGTIAVSLTNYLDSGCIVAGASGLTLWATQFGLSSF
                     AVGLLGAVSANAFGSAIGALIGGHLADKYGRKFIYTYNMLVYMLGVTIIMFAMNFPML
                     LIGFLVTGLSVGAGVPASWTYISEMADPSIRARNIGISQFAWSCGPAIIFTLGIIVSP
                     LGLLGNRLLFLSLLIVAFVAWQLQRKLEESKDWEAEQVKMKESGNRLEHPFKTAFSSM
                     VNVKSVLFLVGVYLFWNLVAGAMGFFMPFVYETVGGLSNTQANLLQAVLWILTAASTY
                     FGFAKFGDRVSHRGLFFVGALMAVASWVVLTFVGMSWVGLWTFVILWGISAGIGAQAF
                     YALWSTELFPTKYRGGVQGVMFFLVRGSTGVWSIVFPVILANLGFTVAGTIMIGLLTV
                     SLLIGVIWAPKTRGRSLDDITKERYGNTID"
     gene            1781..2761
                     /locus_tag="IBJ56_002456"
     CDS             1781..2761
                     /locus_tag="IBJ56_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3418700.1"
                     /translation="MEALNKKLFRLNSKEKIQKSTGTFVPDLPNGSFLKENGSMELLN
                     DYFFKNKDIYISKHNRFADYPYHTHQFLELNYMYSGSSEQVIEGNKETLHEGELLLLD
                     SGCHHSIKATGEKDILINILFRDQQISLEWLTSIKKKNSLLFDFLLHSSVSEQSLKKY
                     IIFQSAQIPHIQQILNQIITEYFLEEEFSSRIITLYLPILFTELVRKCDTYLADDLTN
                     SQSSTTSTMLEVIKLIESNYRTITLTSAADTLGYNKNYLSNFIKKNTNFTFTELVNKQ
                     KMLAANLLIETTSTPIELIIEKVGFSNKTYFYSLYKKTFNLLPNEVRNKK"
     gene            complement(2811..3272)
                     /locus_tag="IBJ56_002457"
     CDS             complement(2811..3272)
                     /locus_tag="IBJ56_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HAM3418701.1"
                     /translation="MAIYKDSVHEMWEKYRTEYPMISSKFEAWAFGNSNQMANELGGL
                     VMDGIKTGTSSLFYWYDQGGETMPSVGSHVVLLDGNEEAMGIIKLTGVTIMPFNEVPE
                     TFAYLEGEGDRTLEYWREVHTSFFSNECVELGIPFEEDALVVCEEFEVVYK"
     gene            complement(3327..3947)
                     /locus_tag="IBJ56_002458"
     CDS             complement(3327..3947)
                     /locus_tag="IBJ56_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein jag"
                     /protein_id="HAM3418702.1"
                     /translation="MRDITAQGSNVEEAIQNALATLETTRDKVEVEVLDEGKKGIFGI
                     GSRLAMVKVIEKEDGIQVAIDYLLDVATKMGAVITIDVEEVGKDVKLQIKGDSLGMLI
                     GKHGQTLNALQYLTQLIANKTTSQYKNIIVNVGDYRERRHETLVILANKMADKALKTK
                     RAVHLEPMPSFERKIIHAILSENEQIETHSEGRDPYRYIVIKPVRK"
     gene            complement(3944..4807)
                     /gene="yidC"
                     /locus_tag="IBJ56_002459"
     CDS             complement(3944..4807)
                     /gene="yidC"
                     /locus_tag="IBJ56_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HAM3418703.1"
                     /translation="MKKKKRFKQKLLIASLVIGLMAVLSGCGYSTDPITSESTGFWSH
                     YIVFPLSWTITWFSDLFGGSYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIK
                     ELQEKYSSKDNETKQKLQQETMRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE
                     IKTDSFLWMQLGNPDPYYILPVVAALTTFLSSKISMMGQTQQNKSMAMIVYIMPVMIL
                     FMGITLPSALALYWIIGNIFTVFQTLLINNPFKNKREQEALAAAQVAEDRLKKKAANM
                     KASKKGGKKRK"
     gene            complement(4848..>5131)
                     /gene="rnpA"
                     /locus_tag="IBJ56_002460"
     CDS             complement(4848..>5131)
                     /gene="rnpA"
                     /locus_tag="IBJ56_002460"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HAM3418704.1"
                     /translation="QFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHE
                     LESQINPENEYIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK"
BASE COUNT         1654 a         1128 c          740 g         1609 t
ORIGIN      
        1 cctgtttttt tataaatata ttctcgtgga tactcactcg ttaaattctg caccgcattt
       61 aaagttcgtt tatcgcggta actaattgga tctgccaact tctcaccgga agcccctatc
      121 aaaacatagt caacgcccca cgtgtcaata ccaagcacac attccgaaat tcctagttgc
      181 tttacttttt ccaagccaat aaagatttcc tgcatcagtt gatcaatttc ccagcgttcg
      241 tgcccatctc ggtacgtaaa accattttta aaacggtgaa tttcttctaa ttgtaatttt
      301 tcattcacca atttccctag aattaatcga ccacttgatg caccaatatc tactgcaaca
      361 taatgtttca ctggtctagc tccttttctt taatcaattg tatttccgta acgttccttc
      421 gtaatatcat caagtgatct gccacgtgtt ttcggcgccc aaattacacc gattaaaagc
      481 gacactgtaa gtaaaccaat cataattgtc cccgccacag taaagccaag atttgccaag
      541 attactggga acacaatcga ccagacacct gtactaccac gaactaagaa aaacatcacg
      601 ccttgaaccc caccacgata ttttgttgga aaaagttctg ttgaccaaag tgcgtaaaaa
      661 gcttgtgcac caatccctgc tgaaataccc cataaaataa caaatgtcca taagccaacc
      721 caagacattc caacaaaagt aagtacaacc caagaagcaa ctgccattaa agcccctaca
      781 aaaaacaatc cacgatgact tactcgatca ccaaatttag caaagccaaa gtatgtagaa
      841 gctgctgtga gtatccataa tacagcttgc aataaattcg cttgtgtatt agaaagacca
      901 cccaccgttt catatacaaa cggcataaag aatcccattg cacccgctac taaattccaa
      961 aataagtaca cacccactaa gaaaagtact gattttacat ttaccatact agaaaatgct
     1021 gttttaaaag ggtgttccaa acgattacca ctttctttca ttttcacttg ctccgcttcc
     1081 cagtccttcg actcctctaa tttacgttgt aactgccaag caacaaacgc tacaatcaat
     1141 aaagataaga aaagtaagcg gttacctaaa agtccaagtg gagatacaat aattcctaaa
     1201 gtaaagataa ttgctggccc acatgaccaa gcaaattgag atataccaat atttctagct
     1261 cttatactag gatccgccat ttcagaaata tatgtccatg aagccggaac cccagcccca
     1321 acagaaagac ctgtaactaa aaatccaatt aatagcattg ggaaattcat tgcaaacata
     1381 atgattgtaa ccccaagcat atacaccaac atgttatacg tataaataaa tttccgtcca
     1441 tatttatctg ctaaatgacc accaataagt gcgccaattg cagaaccaaa cgcattcgcg
     1501 ctcacagccc caagtaatcc caccgcaaaa ctgctaagtc cgaattgtgt tgcccacaaa
     1561 gttagtccac ttgctcccgc tacaatacat ccagaatcta aatagttcgt caaagatacc
     1621 gctatcgttc cttttttact tgtactcgat ccagccattc ttttaaccct cctacttatt
     1681 ttagttaagc gcttacttta tattaaacaa ttaatgattg cgctttacaa tatcctgtgt
     1741 ttataattaa agtatcaaat ttacagaagg agattgtgaa atggaagcgc ttaataaaaa
     1801 attatttcgt ctaaattcaa aagaaaaaat ccaaaaaagc actggcactt ttgttcccga
     1861 tttacccaat ggatcctttt taaaagagaa cggcagcatg gaattattaa atgattattt
     1921 cttcaaaaac aaagacattt atataagcaa acacaaccga tttgcggact atccttatca
     1981 tacacaccaa tttcttgagc taaattacat gtattcagga agctccgaac aagtcattga
     2041 aggaaataaa gaaactttgc atgaaggaga acttttactt ttagacagtg gctgccatca
     2101 ttccatcaaa gcaacaggcg aaaaagacat tctcatcaac atccttttcc gtgaccaaca
     2161 aatcagccta gaatggctaa cgagtataaa gaaaaaaaac agccttctat tcgactttct
     2221 tcttcattcc agcgtaagcg agcaatcttt aaagaaatat attatttttc aaagtgcgca
     2281 aattccgcat atccaacaaa ttttaaacca aattatcaca gaatattttt tagaagaaga
     2341 attttcatca agaattatca ctctttattt gccaattctg ttcactgaac tggtacgtaa
     2401 atgtgataca tatttagctg atgatcttac caactcacaa tcaagcacca cttccaccat
     2461 gctcgaagtt attaagctta tagaatccaa ctatcggaca atcacattaa caagtgccgc
     2521 ggatacatta ggttacaata aaaattacct cagtaacttt attaaaaaaa ataccaattt
     2581 cacttttacc gaactagtca ataaacaaaa aatgctcgca gcaaatcttt taatcgaaac
     2641 cacttccact ccaattgagt tgattattga aaaagttggc tttagtaaca agacttactt
     2701 ctactcctta tacaaaaaaa cattcaatct cttacccaat gaagtaagaa ataaaaaata
     2761 agagtactgc attaatcgca gtactcttct attgtttcac gtgaaacatt ctatttataa
     2821 acaacctcaa actcttcaca aaccactaga gcatcttctt caaatggaat accgagttcc
     2881 acacattcat tactgaaaaa ggatgtatgt acttctcgcc aatattctag cgttctgtca
     2941 ccttctcctt ccaaataagc aaacgtttca ggtacttcat taaaaggcat aatagttaca
     3001 cctgttaact tgataatccc cattgcttct tcattaccat ctaaaagcac tacatgagaa
     3061 ccaacagacg gcatcgtttc tccgccttga tcataccaat aaaacaagct gctcgtaccg
     3121 gtttttatcc catccataac aagcccacca agctcattcg ccatctgatt agagttacca
     3181 aatgcccatg cctcaaactt acttgaaatc atcgggtatt ctgtccggta tttctcccac
     3241 atttcatgca ctgaatcctt ataaatcgcc atttaagtat cctcctaaaa aaagactgag
     3301 gttcgttaaa acctcagtct aagaatttat ttgcgaactg gcttaatcac aatataacgg
     3361 taaggatcgc gtccttcaga atgcgtttca atttgttcat tctcgcttaa aatagcatga
     3421 ataatttttc tttcaaatga aggcattggt tctaaatgaa cagcgcgctt cgttttaaga
     3481 gctttatctg ccattttatt tgctaaaatt actaacgttt catgacgtct ttcacgataa
     3541 tcccctacat taacaataat atttttgtat tggctcgttg ttttattagc aattaattgt
     3601 gttaagtatt gaagtgcatt aagggtttga ccgtgtttgc caattagcat acctagactg
     3661 tcacctttaa tttgcaactt cacatcttta ccaacttctt ctacatcgat tgtgattact
     3721 gcacccatct tggtagcaac atctaaaaga taatcaatcg ctacttggat accatcttct
     3781 ttttcaatta cttttaccat agccagtctt gaaccaattc cgaaaatacc ttttttacct
     3841 tcatctagaa cttctacttc gaccttgtcg cgtgttgttt ctaaagtggc taatgcattt
     3901 tggatagctt cttcaacgtt tgagccttgc gcagttatat ctctcacttt cttttcttac
     3961 ctcctttttt ggaagccttc atgttagctg cttttttctt caaacgatct tccgcaactt
     4021 gagcagcagc aagcgcctcc tgttcgcgtt tgtttttaaa aggattatta attaaaagtg
     4081 tttggaatac ggtgaaaatg ttaccgataa tccagtatag agcaagggca gacggtagtg
     4141 taatacccat aaatagaatc attacaggca tgatataaac aatcattgcc attgatttat
     4201 tttgctgtgt ttgccccatc atagaaattt ttgatgacaa gaatgttgtt aatgccgcaa
     4261 caaccggtaa gatgtaatat ggatctggat ttcccagttg catccataag aatgaatctg
     4321 ttttgatttc tgctgttcta ctaatcgctt ggtaaaatcc tagtagaata ggcatttgga
     4381 ttaataatgg taaacaaccc atcattggat ttacgctatt ttcttgatat agacgcattg
     4441 tttcttgttg tagtttttgt tttgtttcat tatctttaga cgagtatttt tcttgtagtt
     4501 ctttgatttt cggttgtaaa tttgtcatgg ccttttggct tttcagctgt ttgatcatta
     4561 aaggcatgat aagtagacgg attaaaatgg taacaacaat aattccgact gcgtaacttc
     4621 ccccgaataa atcggaaaac caagtaatag tccaggacaa tggaaataca atatagtgac
     4681 tccaaaatcc agttgattct gatgtaattg gatcagttga atagccacaa cccgaaagta
     4741 cagccattaa tccgattaca agacttgcga tgagcaactt ctgtttgaat cgctttttct
     4801 tcttcaaatt gatgtaacct ccaatttcgc ctttttaaaa tttccactca ctttgaattg
     4861 tttggttttt gctttaaaac acgccccact tttaaaacat gaatcaaact tttctttacc
     4921 tcatgaaaat ccatattggc cgccggtttt ctggcgatga taatatattc attttcagga
     4981 ttgatttggc tttctaattc atggaatgat tgtcttatgt aacgtttaat tcgatttcga
     5041 cagacagcgt ttccaatttt tttactaact gataaaccaa ttcgaaaatg attcgatcct
     5101 tcttgcttta aagtataaac aacaaattga c
//
LOCUS       DABQVC010000195         5022 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.195,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000195 DABQVC010000000
VERSION     DABQVC010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5022
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.195"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..315)
                     /locus_tag="IBJ56_002461"
     CDS             complement(<1..315)
                     /locus_tag="IBJ56_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAM3418705.1"
                     /translation="MNWLEKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAF
                     LVTRLENVILKRVRVPRKLIVIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLY
                     NNP"
     gene            437..1126
                     /locus_tag="IBJ56_002462"
     CDS             437..1126
                     /locus_tag="IBJ56_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HAM3418706.1"
                     /translation="MVEKIERKSLAEQVYDQIKAEITNGTWKIGERIPKEADLMAEFG
                     ISRNTLREAIRALSHIGLLETKQGDGTFVRNNSELNAIMQRRVRESTVQEILEIRHAL
                     DREAVILACDRRTEEDVKTLEKYRHQCQLATEKNDVGAFVKADSALHLTIVKAAHNDL
                     LLDMYVNILEEIQFSITSTTEMSPEANQHNGHAALVKAIEKRNKEQAAHEVTEYITLF
                     KRIDAKNGEKK"
     gene            1123..2340
                     /locus_tag="IBJ56_002463"
     CDS             1123..2340
                     /locus_tag="IBJ56_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HAM3418707.1"
                     /translation="MNSDLTNKKILTRSSKVMLVLGIILIAANLRTPITSVGPLLGMI
                     QSDLHLTNTMAGLLTTIPLLAFAGLSPFVSKLSRALGIEVLIFVALLTLVLGSLLRPF
                     GGELNLFAGTFMIGLAIAVGNVILPSLIKKEFPFKLGLMTGVYSISMNLCAAIAAGLT
                     VPIAMNNRFSWHGSMVFWAILGIVALVIWLPQLKYNQRSTEKIATHLVTTSVWKSPLA
                     WKISLFMGSQSAIFYISIAWLPNILADQGLSSTSSGLMLSLMQFAVMPITFIIPIVAG
                     RMKNQQLLVGISILFFLIGIFGIMFASGSVLILSIAIIVYGIGSGMSFSLSMMFFNLR
                     TTSATESADLSGMAQSIGYLFAASGPILFGTLHDALGSWQPTLYVLVGITMLMLYCGL
                     DAGRNKFLFPQKK"
     gene            complement(2539..2766)
                     /locus_tag="IBJ56_002464"
     CDS             complement(2539..2766)
                     /locus_tag="IBJ56_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3006 domain-containing protein"
                     /protein_id="HAM3418708.1"
                     /translation="MKKAILDRIEDGKAVFLLEPDQTEWQIDKEKLDSSIKEGDVVTI
                     SETNEIMKHPQETEEMKNRIAEKLERLRGRN"
     gene            complement(2776..3906)
                     /locus_tag="IBJ56_002465"
     CDS             complement(2776..3906)
                     /locus_tag="IBJ56_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAM3418709.1"
                     /translation="MTKKLVICISLIAIFLSGCSFSEPSTSKSNITEKTLNGASFTFF
                     DVGQGDSTLIQAEDGTTILIDTGRQDDDRILTYLKEANIKKIDLLLLTHPHADHIGNA
                     DKVIATYKPKEIWMDGLTFSSSIYEKVIDAALASDAKYKEPRRGEKATFGPFNLEVLS
                     PDKLENDANNDSIAVKITYKDISAIFTGDAEKGREREMVDSGADLEADILDLGHHGSS
                     TSNQPFFLDKVKPQVAVYSAEMANSYGHPHVEVLEWLKERDIKTYGTDVNGTVIIETD
                     GKKIHVQTEKSGTPKAGSSYNKENSTQKTEDATSEELPDSINLNTASSEDLQLLPLIG
                     PALAEKIIAERPYQSIDDLKKINGIGDGIVRQIKEQGIAVTK"
     gene            complement(4019..4321)
                     /locus_tag="IBJ56_002466"
     CDS             complement(4019..4321)
                     /locus_tag="IBJ56_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418710.1"
                     /translation="MNIEVTDQANKWFHDEFDVANGNGIRLFAKYGGSNSSLHPGFSI
                     GLTAEKPQEAAVAEKKEDLIFFIEDHDYWYFKDHDWKIDYEPKTEEVLFSFKEKVK"
     gene            complement(4554..5015)
                     /locus_tag="IBJ56_002467"
     CDS             complement(4554..5015)
                     /locus_tag="IBJ56_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016184352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HAM3418711.1"
                     /translation="MNSVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMD
                     DLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGT
                     LELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE"
BASE COUNT         1433 a          929 c          912 g         1748 t
ORIGIN      
        1 tggattattg taaagtttca caagagaatc tactaattga gaaatttgat taattaaaat
       61 tggtaagaaa tgcactatag cgacatataa gaatactgct actaatgaat aaagtacaat
      121 gacaattagc tttcttggta cgcgcaccct tttcaaaata acattctcta gtcgtgttac
      181 taaaaatgca aaaatgaatg ttagtaaaat caaatcaatc atacttctga gtaaatataa
      241 aacaatgcct agaagaacaa acactagcac ccgtcttgca gtgtcgtttt cttttaactt
      301 ttctaaccaa ttcatatttt caccagccct tttcttcctt cattttatcg tagtttaaca
      361 aaataaggtt tacaaaaaaa gaattcttct gtaaaataga accaatcatc ctacctttag
      421 aaatggagtg aatagtatgg tagaaaaaat tgaacgcaaa tcgcttgcag agcaagttta
      481 tgatcaaata aaagcagaaa ttactaacgg tacttggaaa atcggtgaac gcattccgaa
      541 agaagcggat ttaatggctg aatttggcat tagtcgtaat acgctacgtg aagccattcg
      601 tgccctatct catatcggtt tactggaaac caaacaaggt gacgggactt ttgttcgtaa
      661 caatagtgaa ctaaatgcta tcatgcagag gcgtgtccgc gaatccacgg ttcaagaaat
      721 cctggaaatt cggcatgcgc ttgacagaga agcagttatt ctggcctgtg atcgacgcac
      781 ggaagaagat gtaaaaacac tagaaaaata tagacaccaa tgccaactag cgacggaaaa
      841 aaatgatgtt ggtgcttttg tgaaagctga ttctgccctt catttaacaa ttgtaaaggc
      901 agctcataac gatttgttgt tagatatgta tgtcaatatt ttagaagaaa tacagttttc
      961 catcacgagt acaaccgaaa tgagcccaga agctaatcag cataatgggc acgctgcgct
     1021 tgtcaaagcg attgaaaaac gaaataaaga acaagcagct catgaagtaa cagagtatat
     1081 tactcttttc aaacgaattg atgctaagaa tggagaaaag aaatgaattc agatttaacc
     1141 aataaaaaaa tccttacacg ctcgagtaag gtaatgcttg ttttaggaat tattttaatt
     1201 gcggcaaact tacggacacc aattacctct gtaggtccgt tacttggaat gattcaatca
     1261 gatttacatt taaccaatac gatggctgga ttacttacaa caattccgct acttgcattt
     1321 gcaggactat ccccgttcgt ttctaagcta agtcgagcac ttggtataga ggtattaatt
     1381 tttgtagcac tattgacact tgtacttggt agcttacttc gaccttttgg tggcgaactc
     1441 aatttatttg ctggaacgtt tatgattggt cttgctattg ctgtcggaaa tgttattttg
     1501 ccaagtttga taaaaaaaga atttccattt aaattgggtc taatgactgg agtttattcc
     1561 atttcgatga atttgtgtgc agcgattgca gctggcttaa cggttccaat tgctatgaac
     1621 aatcgcttta gctggcatgg aagtatggtt ttctgggcaa ttcttggaat cgttgcttta
     1681 gtcatttggc ttccacagtt aaaatataat caacgctcga cggaaaaaat tgcaactcac
     1741 ttggttacaa cttcggtttg gaagtctccg cttgcgtgga aaatttcttt atttatgggt
     1801 tcgcagtcag caatttttta tatttcgatt gcctggttac caaatatttt ggcggaccaa
     1861 ggattatcta gtacttctag tggcttaatg ctctccttaa tgcagtttgc ggttatgccg
     1921 attacgttta ttattcctat tgttgccgga cgaatgaaaa atcagcaatt actagttgga
     1981 atttctattt tattcttttt aattgggatt tttggcatta tgtttgcttc tggtagcgtg
     2041 cttattttat cgattgctat cattgtatac ggaattggtt cggggatgtc atttagtttg
     2101 tcgatgatgt tctttaattt gcgaacaaca agcgctaccg aatcagcgga tctctctgga
     2161 atggcgcaat ctatcggtta cttgtttgcc gcttcaggtc cgatattatt tggtaccctg
     2221 catgatgcgc ttggtagctg gcaaccaacc ttatatgttt tagtcggtat taccatgctt
     2281 atgttatact gcggcctaga tgctggacgc aataaatttc tctttccaca gaaaaagtga
     2341 tttttgcgca taaaaaaact agtgcggaaa aagggagtaa accgcactag ctaaaaggga
     2401 gtttgggatt ttcattctaa aaagggaaag aaatgaaaat gttttgcttg ttgttagctt
     2461 atacatataa taacttttct aaaaaagaat gtgctgaaag aaagatgata atttcatgag
     2521 agtttaaaaa agtttttctc agtttctccc tcttaatctt tctagctttt ctgcaattct
     2581 atttttcatt tcttccgttt cttggggatg tttcattatt tcattagttt ctgaaatagt
     2641 gacgacatct ccttctttta tggatgaatc gagcttttct ttgtcaattt gccattctgt
     2701 ttggtctggt tctaataaaa aaactgcttt gccatcttct atccgatcta aaattgcttt
     2761 tttcacccta atcacctact ttgttacggc aatgccttgt tctttgattt ggcgcacaat
     2821 gccatcgcca atgccgttaa tttttttcaa gtcatctatg gactgatatg gtcgctcggc
     2881 aatgattttt tctgcaagcg ctggcccaat tagtggtaat aattgtaaat cttcactaga
     2941 agctgtattt aaattaatgc tgtctggtaa ttcttctgat gttgcatctt ctgttttttg
     3001 tgtgctattt tctttattat agctgctacc tgcttttggt gtacctgatt tttcggtttg
     3061 cacatggatt tttttaccgt ctgtttcaat gattaccgtt ccattcacat ctgttccata
     3121 tgtttttata tcacgctctt ttaaccactc cagcacttcc acatgaggat gtccgtaact
     3181 attggccatt tcagcagagt aaacagccac ttggggtttt actttatcta ggaaaaatgg
     3241 ctggttggat gtggacgatc cgtggtgccc taaatctaaa atatccgctt ctaaatcggc
     3301 accgctgtct accatttctc tttctcgacc tttttctgcg tcacctgtaa aaatagcgga
     3361 aatatcttta taggtgattt ttacagcgat agaatcatta ttagcgtcat tttccaattt
     3421 atcagggctt aaaacctcta gattaaatgg accaaaagtc gctttttcgc cgcgtctcgg
     3481 ttctttgtat ttggcatctg aagctaatgc tgcgtcaatt actttctcgt aaatactact
     3541 agaaaaagtt aagccatcca tccaaatttc tttcggtttg tatgtagcga ttactttatc
     3601 agcattaccg atatggtctg cgtgcgggtg tgtcagtagc agcaaatcta ttttctttat
     3661 attcgcttct tttaaatagg ttaaaatacg gtcatcatct tggcgacctg tatcaatcaa
     3721 aatagttgta ccatcttctg cttggataag tgtgctatcc ccttggccaa catcaaaaaa
     3781 tgtaaaactt gcaccattca atgttttttc ggtaatgttc gatttactcg ttgatggttc
     3841 ggaaaaacta caaccgctta aaaatatcgc gattaaactt atacagatta ctaatttctt
     3901 tgtcatcttt ctcctcctgc tctcttagta gaatagcaaa ggaaggcgaa acagtaaagt
     3961 ttttaaaaca aaaaccgcct gaaatcaatt tgattacacg cggtcattta tgttggattc
     4021 atttcacttt ttctttaaag gaaaaaagta cttcttccgt ttttggttca tagtcaattt
     4081 tccagtcgtg gtctttgaaa taccaatagt catggtcttc aatgaagaaa attaagtctt
     4141 ctttcttctc agcgactgct gcttcttgcg gtttttcggc agttaaaccg atagagaaac
     4201 caggatgcaa ggaactgtta gaaccaccgt atttcgcaaa aagtcgaatt ccattaccat
     4261 tagctacatc aaactcatca tgaaaccatt tatttgcttg gtccgttacc tcgatattca
     4321 tacttttcac tcctcgtttc caattttttc gtaatgattg ttattcaaga atagcagatt
     4381 tcttggtgaa tttcactttt tctgcttttt gttatgaaga taatatacct ctttcaaaga
     4441 aactttaaac cacattgtgt taagacaatg taaaaataag gaaattgtac tataacagac
     4501 tggggcaaaa aaactgtgtg agacgattaa tcccacacag tttttataac tctttattct
     4561 aatggcgctt ttcctaagaa tgctttgaac atccagatat gtttgtcaat gcttgctttg
     4621 aaagcaatta acatatcgtt tgttacgttg tcgccttctt tgtcagtaag ctcaatacct
     4681 tgttgatatt cgtctctaag taattctaat gttccaacta agtcttccat taattgatcc
     4741 attgtttttg gtttcgtata aggagcttct tcaacgctcg cattttctaa aaactctttt
     4801 aaagtcgaga atgggcttcc gccgattgct agtaagcgtt ctgctacttc gtccatttgt
     4861 tcgccgaatt cgctatataa atcatccatt ttttcatgta aagtgaagaa gttgtggcct
     4921 ctcatatacc aatgaatttg atgaattttt actgtgaata cgtttaggtt cgctacttgg
     4981 tgattcaaaa attcctttgt gtctactgag ttgattgttt tc
//
LOCUS       DABQVC010000196         4851 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.196,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000196 DABQVC010000000
VERSION     DABQVC010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4851
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.196"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            40..2187
                     /locus_tag="IBJ56_002468"
     CDS             40..2187
                     /locus_tag="IBJ56_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HAM3418712.1"
                     /translation="MKKFSMRVVLIISVLFIALGSANVSIAQERDTTNKLPEEELGSL
                     DTSNLIAEEVAQDKPAEVENLEEIPTTDDLMQNPEVREQSVADSDDPDLTVVSSGAYW
                     TIYRNTVNGEYSLRMFGNVPSNRPTAWNSYLKSIKHIEIEEATLTGSFASYFRNNVFT
                     VLESVRIERSNLSGVTSFEMAFYSPTLQKVIIRDNDYPTAPSLRTTEYMFGYTHKLTE
                     LDVSGLDTSAVTNMNCMFNYCSVLEELDVSNFDTSSVTTMRDMFGSSGKLEKLDVSNF
                     DTSSVTTMQAMFYGCTSLEELDVSNFDTNSVTNMSYMFYNCAGLEELDVSNFDTSSVT
                     TMYGTFVGCNSLEELDVSNFDTSSVTTMQAMFNACRALEKLDVSNFDTSSVTTMQAMF
                     ENCTGLGELDVSNFDTSSVTTMAYMFDGCTSLEELDLSNFDTSSVTTMAYMFQNCTAL
                     KSLYLDNFTTPKTMTGMFTGTTALTYLFASHNLRAFDGLANTRWYDEKNWVQFSNYKE
                     LQMYHEYQREPTGYRKGIFLSLTMDAMGGQFEEMEEQKVQNKVSGEYWEEMLPVKEGH
                     YFDGWYLDQNFTNKFDFSLPATVSATIYAKWVENYTVIIPASISLNEASELKVEGINR
                     GGKTLSVGLNYGKTTISESNKLTLANTADTTVQCLAPLSWDGSETNPEKAILTLAPGS
                     EITEGDAVMAIEAPENIQAGTYTGNLVFSINYE"
     gene            2323..4404
                     /locus_tag="IBJ56_002469"
     CDS             2323..4404
                     /locus_tag="IBJ56_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HAM3418713.1"
                     /translation="MKKFSMRVVLIISVLFIAFGSANVSTAQERDTTNKLPEEELGSL
                     DTSDVIAEEVAQDKPAEVEQLEEIPTTDELMQNPDVREQPVANSDDPDLTVVSSGDFW
                     TLYYNSANDEYNLRMFGNVPSSKPSAWNSYLKSIKHIEIEEATLTGNFASYFRSNVFT
                     VLESVRIERSNLSGVTSFARAFEGDSVSDSPLEKVIIRDNYYPETPSLTDISRMVTLC
                     RKLSELDVSGLNTSSVTNMYAAFSNTNSLKELDISNFDTSSVTDMSYMFSYCTSLEEL
                     DLSTFDTSSVTNMYCMLNGLHLKKLDLSNFDTSSVTNMQQMFYGSYNLEELDLSNFDT
                     SSVTNMHLMFGGCKSLEELDVSTFDTSSVTNMRGVFAECNSLGELDLSTFDTSSATTM
                     QIMFYDCTSLEELDLSTFDTSSVTNMDRMFQECTALKSLYLDNFTDAPSMTDMFKGTT
                     SLTYLFASHNVSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGEFLSL
                     TMDAMGGEFEDAEEQKVQSKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAA
                     VSTTIYAKWIENYTVIIPASISLNETSELKVEGINRGDKNLSVGLNRTATSVSESNKL
                     TLANTTDTTVQCLVPLSWDGSENNPKNAILTLAPGSEITEGEAVMAIEAPENIQAGKY
                     TGNVVFSIKYE"
     gene            4470..>4851
                     /locus_tag="IBJ56_002470"
     CDS             4470..>4851
                     /locus_tag="IBJ56_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uracil-5-)-methyltransferase"
                     /protein_id="HAM3418714.1"
                     /translation="MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWN
                     GKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLW
                     ISDLIEPGKGMYSIELEKTLAVGEY"
BASE COUNT         1557 a          792 c         1083 g         1419 t
ORIGIN      
        1 ggcatctaga aactaattag gaaagaagga ggggagctga tgaagaagtt ttccatgcga
       61 gtggtcctta ttatttctgt gctttttatt gcactgggga gcgccaatgt ttctatcgca
      121 caagaaagag acacaacgaa taagcttcca gaagaggagc tgggttctct ggatacctct
      181 aatcttattg cagaagaagt cgcacaagac aaaccagccg aggtcgagaa cttagaagaa
      241 atcccaacta cggatgactt gatgcaaaat ccagaggttc gagagcagtc tgttgccgat
      301 tcggatgatc cggatttaac agtggtaagc tcaggtgctt actggacgat ttatcgcaat
      361 actgtgaacg gtgaatatag cttgcgtatg tttggcaacg taccgagcaa tagaccaacc
      421 gcttggaata gttatttaaa aagtattaaa catatagaga ttgaagaagc tactctgaca
      481 ggaagttttg catcgtattt tagaaataat gttttcacgg tacttgagag tgtgaggata
      541 gaacgttcaa atttgtctgg agtgacgtct tttgaaatgg cattttatag tccaacactt
      601 caaaaagtga taatcagaga caatgattat ccgacagcac catctttacg cactacggag
      661 tatatgtttg gttatactca caaacttacg gagcttgatg tgagtggtct tgatacgagt
      721 gctgtaacta atatgaattg tatgtttaac tactgtagcg tacttgagga actggatgta
      781 agtaattttg ataccagttc cgttactact atgagggaca tgtttggtag tagtggaaaa
      841 ttggagaagc tggatgtaag caattttgat accagttcag taactactat gcaggccatg
      901 ttttatggtt gtactagcct tgaagagctt gatgtaagta attttgatac caattcagtg
      961 actaacatga gctacatgtt ttacaattgc gctggtcttg aagagcttga tgtaagtaat
     1021 tttgatacca gttccgttac tactatgtat ggcacgtttg ttggctgtaa tagtcttgaa
     1081 gagcttgatg taagtaactt tgatacgagt tcagtaacta ctatgcaggc catgtttaat
     1141 gcctgtagag cacttgagaa gctggatgta agcaattttg atacgagttc agtaactact
     1201 atgcaggcca tgtttgaaaa ttgtactggc cttggagagc ttgatgtaag taactttgat
     1261 acgagttcag taactactat ggcttacatg tttgatggat gtactagcct tgaagaatta
     1321 gatttaagta attttgatac cagttcagta actactatgg cttacatgtt tcaaaattgt
     1381 acagcgttaa aatctttata tctggataat tttactaccc caaagactat gacaggtatg
     1441 tttactggaa ccaccgcctt aacctacttg tttgccagtc acaatttaag agcttttgat
     1501 ggcctagcaa atacaagatg gtatgacgaa aagaattggg tacagttttc gaattacaag
     1561 gaactacaga tgtatcatga ataccaaagg gaacctactg gctatagaaa aggtatcttc
     1621 ctttccctaa caatggatgc gatgggtggg cagtttgaag aaatggaaga acaaaaagta
     1681 caaaataaag tttctgggga gtactgggaa gaaatgcttc ctgtaaaaga aggacattat
     1741 tttgatgggt ggtatcttga tcaaaatttc actaataagt ttgatttttc tttaccagca
     1801 actgtttcag caactatcta cgcaaaatgg gtagaaaact acacggtgat tattccagct
     1861 tctatttcct taaatgaagc ttccgaattg aaagtagaag ggattaatcg agggggtaaa
     1921 accttatccg taggcttgaa ttatggaaaa acaaccattt ctgagagcaa caagctaacc
     1981 ttggccaata cggcagacac aacagtccaa tgtttggcac cactgagttg ggacgggtca
     2041 gaaactaatc cagaaaaagc gattttaacc cttgccccag gttcggaaat aacagaaggc
     2101 gatgcagtca tggctattga agcgccagaa aatatccagg caggaacgta taccgggaat
     2161 ctagtatttt cgattaatta tgaataattt tgctaagcaa gccatagaat tttaagaagt
     2221 taaaatttta tggccggaaa agcttttcga ctcctctata attaagttgc agctagaaag
     2281 ttcggcatct agaaactaac tacgaaagaa ggaggggagc tgatgaagaa gttttccatg
     2341 cgagtggtgc tcattatttc tgtgcttttt attgcttttg ggagcgctaa tgtttctacc
     2401 gcacaagaaa gggacacaac gaataagctt ccagaagagg aactaggttc tttggatacc
     2461 tctgatgtca ttgcggaaga agtcgcgcaa gacaaaccag cagaggtgga gcaactagaa
     2521 gaaatcccaa ctacggatga gttgatgcaa aatccagatg ttcgagagca gcctgttgcc
     2581 aattcggatg atccggattt aacagtggtc agctcaggtg atttttggac gctttattat
     2641 aattctgcga acgatgaata taacttgcgt atgtttggca acgtgccaag cagtaaaccg
     2701 agcgcttgga atagttattt gaaaagcatt aaacatatag agattgaaga agctactttg
     2761 acagggaatt ttgcatcgta ttttagaagt aatgttttca cagtacttga gagtgtgagg
     2821 atagaacgtt caaatttgtc tggagtgacg tcttttgcaa gggcatttga aggtgacagt
     2881 gtatcagact caccacttga aaaagtgatt atcagagata attattatcc ggagacgcct
     2941 tctttaacag atataagtag aatggttacc ttatgtcgta aacttagtga gcttgatgtg
     3001 agtggactca atacaagttc cgtcactaat atgtatgccg catttagtaa cacgaatagc
     3061 cttaaagaac tggatataag taactttgat acgagttcag tgactgacat gagctacatg
     3121 ttttcttatt gtactagtct tgaagagctt gatttaagta cctttgatac cagttctgtt
     3181 acaaatatgt attgtatgtt gaatggactc cacttgaaaa agctagattt aagcaacttt
     3241 gatacgagtt ccgttactaa tatgcagcaa atgttttatg gtagttacaa tcttgaagag
     3301 ttagatttaa gcaactttga tacgagttcc gttactaata tgcacctaat gtttggtggc
     3361 tgtaaaagtc ttgaagagct agatgtaagc acctttgata ccagttcagt gactaacatg
     3421 cgtggtgtgt ttgctgagtg caatagtctt ggagagctag atttaagtac ctttgatact
     3481 agttcagcaa ctactatgca gatcatgttt tatgattgta ctagccttga agagctagat
     3541 ttaagtacct ttgatactag ttccgtgact aacatggata ggatgtttca agagtgtaca
     3601 gcgttaaaat ctttatacct ggataatttt acggatgcac caagcatgac agatatgttt
     3661 aagggaacca cctccctaac ctacttgttt gcaagtcaca atgtaagtac ttttaatagg
     3721 ttagaaaata caagctggta tgatgaaaag aattgggtgc agttttcgaa tctctcgcaa
     3781 ctacagacat atcaccggaa acaaagtgaa cctacaggct acagaaaagg tgagttcctt
     3841 tccttaacaa tggatgcgat gggtggagaa tttgaagacg cggaggaaca aaaagtacaa
     3901 agtaaaattt ctggggagta ctgggaagaa gtgattccag taaaagaagg acattacttt
     3961 gacgggtggt atcttgatca aaatttcact aataagtttg acttttcatt gccagctgct
     4021 gtatctacaa ctatctacgc aaaatggata gaaaactata cagtgattat tccggcttcc
     4081 atttctttaa atgaaacttc tgaattgaaa gtagaaggga ttaatcgagg agataaaaat
     4141 ttgtccgtgg gattaaaccg aacagcaaca tctgtttctg agagcaacaa gctaaccttg
     4201 gccaatacga cagacacaac agtccaatgt ttggtaccac taagttggga tgggtccgaa
     4261 aacaatccaa aaaatgccat tttaactctc gctccaggct cggaaataac agaaggcgag
     4321 gcagtcatgg ctattgaagc accagagaat atccaggcag gaaaatatac agggaacgtt
     4381 gtattttcga ttaagtatga atgatgtaaa ttagccagac tagtgatcat gtcaaggtca
     4441 tttggttatg aataaattgg aggttaccta tgaagaagaa aagagtagtg atcatatcct
     4501 tactactatt gttagtaagt gtcattggaa tcagtagtta ttttctattc aaggataaaa
     4561 taaatctgtt ggatgtagac cattctgccg ttgattggaa cggaaaaaaa cagaaggata
     4621 caagtggaga agaaaataca attgccattc cagggtttga aaaagtaacg ttgtatgcaa
     4681 atgaaacaac acaagcagtg aatttccata atccggaaat taatgattgt tacttcaaaa
     4741 tatcgcttat tcatccggat ggttcggttc tatggatatc tgatttaatc gaaccgggaa
     4801 aaggtatgta ttccattgaa ttagaaaaaa cgttagcggt aggcgaatat g
//
LOCUS       DABQVC010000197         4788 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.197,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000197 DABQVC010000000
VERSION     DABQVC010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4788
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.197"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            28..492
                     /locus_tag="IBJ56_002471"
     CDS             28..492
                     /locus_tag="IBJ56_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaR family protein"
                     /protein_id="HAM3418715.1"
                     /translation="MNNVSIGQISQSKQTNVVRGMQELNQTQQLYFEQMKANGKKQTP
                     SLTEINELITNVTDKKSLVEMDMTVDNVLSYKKAVQTFLNFYVNNVMDYDNIESRHPK
                     YGFSQKMTILKQVEKQTNELDDVMNLIDTKTGHLDMLNRIGEITGMILDVVL"
     gene            502..930
                     /locus_tag="IBJ56_002472"
     CDS             502..930
                     /locus_tag="IBJ56_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Myocilin"
                     /protein_id="HAM3418716.1"
                     /translation="MQNELINQLEILIEKNVKATDAAILLGKLVQEENWIEAEERQLG
                     LQRELAALQNEYQALKTIIGEDNTLRTLQNTWTPAENAIIDERKKMLLEKENLLRVSV
                     TENQIRTEMQLAFSEHMVDVITGHHAETQAENNMMINETF"
     gene            950..2470
                     /gene="flgK"
                     /locus_tag="IBJ56_002473"
     CDS             950..2470
                     /gene="flgK"
                     /locus_tag="IBJ56_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HAM3418717.1"
                     /translation="MRLSDFNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTA
                     VYGDGGLLGGKQTGYGVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLF
                     GTPGKNTPSDNLDNFFTAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELET
                     TIAADTDAAIQDLNSLIKKLGSINKAIGNAGSNPPNDLLNQRDQLLSTMAGYAGISVS
                     AHPNNPDVYDVTIGGRLVVQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRV
                     NQNEIKSYQEKIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNR
                     DELLRLLEKFPGVTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWIL
                     NPAITSNADNKPFLGVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATST
                     ADTQALNSLSESKSSLEGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML"
     gene            2482..3357
                     /locus_tag="IBJ56_002474"
     CDS             2482..3357
                     /locus_tag="IBJ56_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein 3"
                     /protein_id="HAM3418718.1"
                     /translation="MRISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPG
                     ATAQILSYNHVLSQLNREKTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTS
                     DKDNMSQSAEEIKGLLDVLISVANSEDDGRYVFSGSSTSVKPFTTDKTTGEIIYNGTT
                     ENKKFRVTDTLEVEVFHDGSAMTDVFNNIQKIVDAMKTGDKDALSALQETNSKNIEII
                     TNSMTNIGGQKNGVAAYDNVLSSKIVDFSERKSNVEEVNMPEAVSNLNKTSIAYQAAL
                     QSSVMVQKLSILNYM"
     gene            3369..4658
                     /locus_tag="IBJ56_002475"
     CDS             3369..4658
                     /locus_tag="IBJ56_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein 2"
                     /protein_id="HAM3418719.1"
                     /translation="MGSSIASSLMDPTQYYSQFISLQKASLEKAKTPYQNQISSYQSR
                     IDLYASLKNALSESLKTMSSFTTYESKTKLATSSNETSFTVSSTSSSVNGSYSIEVQN
                     LATADTYNKAVPDIEAKIGVSGTIKINGKEIKVDADSSMKNVMNSINSAGAKVNIYTL
                     GENMVVTSSTTGVENSIKFEGDSAVLDALGLVQNSPDHLAAEDAKLRINGATVTSATN
                     KVTNYIPGVTINLKKETTGAEKLTIQDQSDEKAASMITSFVNTYNALTSTMKTYTGKG
                     TILQASAADLEANRALNNVFQHKKDGNTLFDFGISVDKEGVLKVDETAMKKMVAEDPT
                     AVERFFFGIGGIGDELYQSLNKTFGSTGFISDETTSMTNEINKLNLKLTDITSRNDTL
                     LTNITDQYNKWLEMMQAMQSDAMTLDALIDGMNSSNK"
     gene            4677..>4788
                     /locus_tag="IBJ56_002476"
     CDS             4677..>4788
                     /locus_tag="IBJ56_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliS"
                     /protein_id="HAM3418720.1"
                     /translation="MQAWKRYTQNELNTSNPIKNTIYIYERCIIEFKKLDK"
BASE COUNT         1752 a          931 c          951 g         1154 t
ORIGIN      
        1 gaaaatgagt ttttcggggg aaaaaggatg aataatgttt caattggcca aatttcgcag
       61 tccaaacaga cgaatgtagt taggggaatg caagaattaa atcaaacaca acagctttat
      121 tttgaacaaa tgaaggcaaa tggcaagaaa caaactcctt ccctgactga aattaacgaa
      181 ctaatcacga atgtcacaga taaaaagtca ctcgttgaaa tggatatgac ggtagataat
      241 gttttgagct ataaaaaagc agtccaaaca tttttgaatt tttatgtgaa taatgtgatg
      301 gattacgaca atatcgaaag ccgtcatcca aaatacgggt tttcgcaaaa aatgacgatt
      361 ttaaagcaag tagaaaaaca aaccaatgaa ctcgatgatg taatgaattt aattgataca
      421 aaaactggac atttagacat gctaaaccgt attggtgaga ttactggcat gattctcgat
      481 gtcgtattgt aggtgatggg aatgcaaaac gaattaatca atcaattaga aattttaatc
      541 gaaaaaaatg tcaaagcgac cgatgcagca attttactcg gaaaattagt gcaagaagag
      601 aactggattg aagcagaaga acgccaacta gggctacagc gcgaacttgc cgctttgcaa
      661 aacgaatatc aagctttaaa aacaatcatt ggcgaagata atacgcttag aacgctccaa
      721 aatacttgga cacctgcgga aaatgccatt atagatgaac ggaaaaaaat gctacttgaa
      781 aaagaaaacc ttttacgagt aagtgttacg gaaaaccaaa ttagaacaga aatgcaattg
      841 gctttttcgg aacatatggt ggatgttatt acgggacatc acgcggaaac acaagcagaa
      901 aataatatga tgataaacga gactttttaa gtaaacggag ggattttttg tgcgtttaag
      961 tgattttaat acgtcattat cgggcatgtc agcggcgcaa atcgctaata tggtcgctca
     1021 gcaaaatatt agtaatatga atacgccagg atacataaga caagctgtgg atcagacggc
     1081 ggtttacggt gacggtggtc tgcttggtgg gaaacaaaca ggctacggag tcaaagtgac
     1141 agacattaaa cgtctaacaa atacagcact tacgacacaa tacaataatc aaatcgccaa
     1201 acaatccgct tcgttatatc aaagtggggc gctcggtcaa gcacttaatt tatttggtac
     1261 tccagggaaa aatacaccaa gtgataattt agataatttc ttcaccgctt gggcagcatt
     1321 agcgaaaaat cctgaccaag caacgaatac aacggcactt ttatccagta tgtcgatttt
     1381 tacggatcaa ttaaaccaac ttcattcggg cttaaaagaa ttagaaacaa ccattgcagc
     1441 agatacagat gccgcgattc aagacttaaa ttcattaatt aaaaaattag gcagtatcaa
     1501 taaagcaatc ggaaatgcag gctccaaccc accgaacgat ttgctgaacc aacgcgatca
     1561 actacttagt acgatggctg gctatgctgg gatttccgtg agcgcccatc cgaataatcc
     1621 agatgtgtac gatgtgacaa ttggcggacg tcttgttgtc caaggtgatg aaacgaccga
     1681 aatcacatca acgcgaaccg cgactggctt tgaattttcc gtagacggtc aaaaactcaa
     1741 catgccagaa ggttccatca tcgcttccgt tcgtgttaac caaaatgaaa ttaaatcgta
     1801 ccaagaaaaa atcgaaactt tttcgaacag cctagcaaaa gcattagatg atattcaagt
     1861 caaaaacgtc aataaaacaa tggacgattt gcaaaaaatc aatgatgcgc tcaaagcgaa
     1921 tccgaacgac gaaaaactac tgagcaatcg cgatgaactt ttgcgtctat tagaaaaatt
     1981 ccctggtgtg actcgttctg gtgatacgct gacgattggc ggagttgacc acgcgattga
     2041 cacgcttggc acgagtacat atgtaaccga tgtgaatgat ttttccattc caattttcac
     2101 ccaaagctct ggcaaatgga tcctgaatcc tgcaatcaca agtaacgctg ataacaagcc
     2161 gtttctagga gttatcgcgg cggatatcgc ttccttgaaa acagacaaaa acattcaagg
     2221 aacaactttc ccgagtttca tggacggaat cattaccgaa gtggcgacgg acgctagtaa
     2281 aagtagcgca acttctacgg cagacacgca agctttaaat tccctttctg aatcaaaatc
     2341 atctcttgaa ggagttaata ttgacgagga aatgacaaat atcatgcaat accaaagtta
     2401 ttatgtggcc aatacgaaag ccatgaacac agtgaacgat atgatgaaag ctctcttagc
     2461 catgttataa ggaggaaaat aatgcgaatt tcaacgaatc aacaagcaaa ttcaataatt
     2521 aatcagctga ataatgtctc aggaaacctt gcaaaatacc aattacaagt atcttctggg
     2581 aaaaagtatg aatcgatgag cgaaaatcct ggtgcaacag cgcaaatttt atcctataat
     2641 catgtgctta gtcagctaaa tcgcgaaaaa acggacgtaa ccgaagcaaa atcattatta
     2701 aatacggctg aaacatccct ttcatccatg tctacatcga tgaaccgggt aaatgcttta
     2761 gtcttgcaag cgattaacgg cacgagcgat aaagacaata tgtcgcaatc agccgaagaa
     2821 atcaaaggtt tactggatgt tcttatttct gtcgctaact cagaagacga tggcagatat
     2881 gtttttagtg gttctagcac gagcgtgaag ccatttacaa cagataaaac cactggagaa
     2941 atcatctata acggaacaac agaaaataaa aaattccgcg taacggacac attagaagta
     3001 gaagttttcc atgatggtag tgcgatgacg gatgtgttta acaacattca aaaaatcgtt
     3061 gacgcaatga aaactggcga taaggatgct ttgtctgcct tgcaagaaac aaacagcaag
     3121 aatattgaaa tcatcaccaa ttcgatgaca aatatcggcg gacagaaaaa cggtgtagca
     3181 gcctatgata acgtactttc tagcaaaatt gtcgactttt ccgaacgtaa atccaatgtc
     3241 gaagaagtca atatgccaga agctgtaagt aatctaaata aaacatcgat tgcataccaa
     3301 gccgcactac aatccagtgt gatggtacaa aaattaagca ttctaaatta tatgtgaggt
     3361 gagaccaagt gggaagttcg attgcaagca gtttaatgga cccaacgcaa tactattcgc
     3421 aatttatcag tcttcaaaaa gctagtttgg aaaaagcgaa aacgccttat caaaaccaaa
     3481 tttccagcta ccaatcacgg attgatcttt atgctagttt gaaaaatgct ttatctgagt
     3541 cgctgaaaac gatgagctct ttcacgactt atgaaagtaa aaccaaactc gcgacttcat
     3601 ccaacgaaac gagttttact gtttcatcaa cgagcagttc cgtcaacggc agttattcta
     3661 tcgaagtcca aaacttggcg accgcagaca cttacaataa agcagtacct gatattgagg
     3721 caaaaatcgg tgtaagcggg acaatcaaaa tcaatggcaa agaaattaaa gttgatgcag
     3781 atagctcaat gaaaaatgtg atgaactcca tcaatagcgc cggagctaag gtgaatatct
     3841 acacgctagg cgaaaacatg gtcgtaactt cttcaacaac cggtgtcgaa aacagtatta
     3901 aatttgaagg cgattcggct gttctcgatg cacttggatt agtacaaaat tccccagacc
     3961 atttagctgc agaggacgcc aaactcagaa tcaacggagc gaccgttaca agtgcaacaa
     4021 acaaggtaac caactacatc ccaggcgtga ccatcaacct caaaaaagaa acaactggcg
     4081 ctgaaaaatt aaccatccaa gaccaaagcg atgaaaaagc agccagcatg atcaccagtt
     4141 ttgtaaatac atacaatgca ctaacaagca caatgaaaac ctacacggga aaaggaacca
     4201 ttttacaagc atctgctgcc gacctcgaag caaatcgcgc cctaaacaac gtattccaac
     4261 ataaaaaaga tgggaataca ttattcgatt ttggaataag tgtcgacaaa gaaggcgttt
     4321 taaaagtcga tgaaactgca atgaaaaaaa tggtagctga agacccaacc gccgtcgaaa
     4381 gatttttctt tggcattggt ggaattggcg atgaactgta tcaatctttg aacaaaacat
     4441 ttggctcgac aggctttatc agtgatgaaa cgacctcgat gacgaatgaa atcaataaat
     4501 taaacctcaa gttaaccgat attactagcc gaaatgacac gttattaacg aatattacgg
     4561 atcaatacaa caaatggctt gaaatgatgc aagctatgca aagcgacgcc atgacgctag
     4621 atgccctcat cgatggcatg aacagttcta ataaataaaa atggtaggtg aaaaaaatgc
     4681 aagcttggaa acgatacacg caaaatgaat taaatacgag caaccccatt aaaaacacca
     4741 tttatatata cgaacgttgt attattgaat ttaaaaaatt ggacaaag
//
LOCUS       DABQVC010000198         4737 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.198,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000198 DABQVC010000000
VERSION     DABQVC010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4737
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.198"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(10..1221)
                     /locus_tag="IBJ56_002477"
     CDS             complement(10..1221)
                     /locus_tag="IBJ56_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance MFS efflux pump"
                     /protein_id="HAM3418721.1"
                     /translation="MSSTKSIINKKTLLFGLISVFLCGMGFSIIMPVVPFLVTPYVTN
                     ASDQALMVTLLTSVYALCVFFAAPGLGALSDRFGRRPVLLICFIGSAIGYFIFGLGGA
                     LWVLFLGRIFEGITGGSISTLFAFFADITPQEERTKYFGWVSAAAGAGAALGPAFGGL
                     LAHFGYAMPFFFGAAITFINFLFGYFYMPESLEEANRLKRIPLMRLNPFSQLLKILTI
                     KNLGRLLIAAFFIWVPNGSLQAVMSQFAIDSFSWKPALIGMMFSIMGIQDILSQAFVM
                     PKLLLKLTDKQIAILGMIAEIIGYLLIAASSIFTLAPLLVIGMFVFGFGDSIFGPSFN
                     GMVSKSASASEQGRIQGGSQAIQSVARIIGPVIGGQLYITLGHAAPAIMGVLLITVAI
                     FILYKKTSLAK"
     gene            complement(1351..1821)
                     /locus_tag="IBJ56_002478"
     CDS             complement(1351..1821)
                     /locus_tag="IBJ56_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3418722.1"
                     /translation="MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYI
                     AKNEDPNVTKLAEAFYMTKSAISKITKKLMDKGYIESYQKPENKKEIYFRLTAKGAEI
                     NQVHDDLHQEFLDRDKVVFEDVTDAQYAEVLKFVDKYSRHLDNEMQKVYNQKSE"
     gene            2023..4665
                     /locus_tag="IBJ56_002479"
     CDS             2023..4665
                     /locus_tag="IBJ56_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HAM3418723.1"
                     /translation="MEIYRKSAAETFTQLEATEQGLTTSEVTKRQEKYGFNELKNKKK
                     DPLWKLFLETFKDPMVIVLVVAALVQLVLGEVVESLIIFLVLIVNSIISVVQTRKAES
                     SLDALREMSAPVAKVIRDGSKQSIHARELVPGDVVILDAGDFVPADGRLFESGSLKID
                     EGMLTGESEAVEKYIDTIPDEVGLGDRVNMVFSGSLVVYGRGMFVVTGTASETEIGKI
                     AGLLETAEAKQTPLQRKLESFSKKLGLGILALCVLIFAVEAGRVLLGDNSADMATAIL
                     NAFMFAVAVAVAAIPEALSSIVTIVLAVGTNKMAKQHAIIRKLPAVETLGSTSVICTD
                     KTGTLTQNKMTVVDYYLPDGTKENFPESPENWSEGERRLIHIAVLCNDSNINSEGKEL
                     GDPTEVALIAFSNKNNQDYNEIREKFIREGEIPFDSDRKLMSTLHTFNENKAMLTKGG
                     PDVMFARCSYVFLDGEEKPMTEEILAKLKETNEEFSNQALRVLAYGYKRMPADTTELK
                     LEDEQDIVLVGLTAMIDPPREAVYASIEESKKAGIRTVMITGDHKTTAQAIGRDIGLM
                     DADDIALTGQELDAMPEEELDKKLEHIAVYARVSPENKIRIVKAWQKKGKITAMTGDG
                     VNDAPALKQADIGVAMGSGTDVAKDSAAMILTDDNFVSIVDAVGVGRTVFDNIKKSIA
                     YLFAGNLGAIIAILFALVLDWINPFTALQLLFINLVNDSLPAIALGMEKAEPDVMKRK
                     PRDINEGIFAGGTMRAVISRGVLIGIAVIISQYIGLQISPEMSVAMAFTTLILARTLQ
                     TFAARSNVQTAFGAGFFSNKYVIGAVLLCFVLYGITVLPGAREIFSIPASFGLHEWSI
                     AAGLALAAVVMMEIIKLVQNKFFK"
BASE COUNT         1505 a          950 c          991 g         1291 t
ORIGIN      
        1 cgaaaaacat tattttgcta aagaagtctt tttataaaga ataaaaattg caacagtgat
       61 taaaaggaca cccataatag caggagcagc atggccaagc gtaatataaa gttgcccacc
      121 gataacgggt ccgataatac gcgccaccga ctgaatggct tggctacctc cttgaatccg
      181 accttgttcg ctagcgctag cagattttga aaccatgccg ttaaacgaag gtccgaaaat
      241 cgagtcgcca aaaccgaaaa cgaacatccc gataacaagt agcggcgcaa gtgtgaaaat
      301 cgaggaagct gcaataagca aatagccaat aatctcagca atcatcccca aaatagctat
      361 ttgtttgtcc gttaacttga gtagtaattt tggcataaca aaagcttgcg acaagatatc
      421 ttgaattccc ataatggaaa acatcatccc aattaaagct ggcttccaac tgaaactatc
      481 aatggcgaat tgagacatga cagcttgcaa ggaaccatta ggaacccaaa tgaaaaatgc
      541 agcaatcagt aaacgtccta agtttttgat ggtcagaatt ttaagcagct gggaaaaagg
      601 attgagtcgc ataagcggaa ttcgttttaa acgatttgct tcttctaaac tctcaggcat
      661 gtagaaataa ccgaataaaa agttgatgaa agtaatcgct gctccaaaga aaaatggcat
      721 tgcgtaacca aagtgggcaa gcaatccacc gaaagccgga ccaagcgcag cacccgcacc
      781 agctgcagcg ctaacccaac caaagtattt cgtccgctcc tcttgaggcg taatatcagc
      841 aaagaaagca aatagtgtac ttatgctacc accagtgatt ccttcaaaaa ttcgaccaag
      901 aaagagcacc caaagcgccc caccaagacc gaaaataaag taaccaatcg cagagccgat
      961 aaaacaaatg agtaacactg gtcgtctgcc aaatctgtca cttaaagcac caagaccagg
     1021 cgcagcaaag aacacgcaaa gcgcataaac agatgtgagc agtgtcacca taagcgcttg
     1081 atcactagca tttgttacgt aaggtgttac gagaaacggg acaacgggca taataatact
     1141 aaaccccatc ccacaaagga agacagatat aagaccgaaa agtaaagttt tcttattaat
     1201 aatagattta gttgaagaca tgtaatactc ctatcgattg taattagtgt cctaggaaac
     1261 ataattagct taactcgttt ttgtttcctt gtcaacaaaa ataaaacaat aaaaaacaac
     1321 ctaacttgaa aaattaggct gttactaggt ttattcggat ttttgattgt aaactttctg
     1381 catttcatta tctaaatgac gactatattt atccacaaat tttaacactt ccgcatattg
     1441 tgcatccgtt acgtcttcga aaactacctt gtcacgatcg aggaattctt gatgcaaatc
     1501 atcgtggact tggttaattt cagcgccttt agctgttaga cggaaataaa tttctttctt
     1561 attctccggt ttttgataac tttcaatata gcctttatcc atcagctttt ttgtaatttt
     1621 gctaatcgcg ctctttgtca tatagaaggc ttccgcgagt ttcgttacat taggatcttc
     1681 atttttggca atgtattcga tgcagtggac ttcagaaggt ttatatccct ctagcgcttt
     1741 ttccatcttc actttattaa tccaagcgag cttattaaat aaatctctga cgttcgccat
     1801 gacttgttca tttttatcca tgccatgccc tcctactcta tctgcttgta gtatagctgt
     1861 tttttgtgtc cggttcaact atttattgcc tttcgtagct aaaaggggaa cttgaaagcg
     1921 ctgtttgtta agagtgtgta aatttccagt gttatcaata ttatttcact gttaagattt
     1981 gttatactta acacataaac tgtttggaag gggctgacat gattggagat ataccgcaaa
     2041 agcgcggcag aaacatttac acaactagaa gcaacagaac aaggcttaac aactagtgag
     2101 gtaacaaaac gacaagaaaa atacggtttt aacgaactga agaataaaaa gaaagatcca
     2161 ctttggaaac ttttcctgga aacatttaaa gatccaatgg ttattgtttt agtcgttgct
     2221 gccttagtgc agttggtttt aggcgaagtg gttgaatcgc ttattatctt tttagtactt
     2281 attgtcaact cgattattag cgtagttcag acgaggaaag cagaaagttc gcttgatgca
     2341 ttacgagaaa tgtctgcgcc ggttgccaaa gtaattcgtg atggctctaa gcaaagtatt
     2401 catgcgcgcg aacttgttcc gggtgacgtc gttattttgg atgctggtga tttcgtccca
     2461 gcagacggcc gtttgttcga aagcggctct ttaaaaatcg acgaagggat gcttactggt
     2521 gaatcggaag cggtcgagaa atatattgat accattccag atgaagtggg gcttggcgac
     2581 cgtgtgaata tggttttcag cggttccctc gttgtatatg gtcgtgggat gtttgttgta
     2641 acaggcacag cgagcgaaac agaaatcgga aaaatcgccg gacttcttga aacagcagaa
     2701 gcaaaacaaa caccactaca aagaaaacta gaatcattca gtaaaaagct aggactcggt
     2761 attttagctc tctgtgtact tatttttgca gttgaagctg gtcgcgtatt actcggcgac
     2821 aattcagcgg atatggcaac ggcgatttta aatgccttta tgtttgccgt ggccgtagct
     2881 gtagcagcga ttccggaagc actttcttct attgtaacga ttgtacttgc agttggaaca
     2941 aacaaaatgg caaagcagca cgcgattatt agaaagcttc cagcagttga aacactaggc
     3001 tccacaagcg ttatttgtac agacaaaacc ggaacgttaa cgcaaaataa aatgacggtc
     3061 gtcgattact atttacccga tggcacaaaa gaaaatttcc cggaaagtcc agaaaattgg
     3121 tcagaagggg aacgccgttt gattcatatt gcggtacttt gtaacgattc aaatattaac
     3181 agtgagggca aggagttagg cgacccgacc gaagtggcgc taattgcctt tagtaataaa
     3241 aataatcaag attacaatga aattcgcgaa aaattcattc gtgaaggcga aattcccttt
     3301 gattcagatc gtaagttaat gtctacgctt cataccttta atgaaaacaa ggcaatgcta
     3361 acaaaaggcg gaccagacgt gatgttcgcg cgttgcagtt atgttttcct tgatggggaa
     3421 gaaaagccaa tgacagaaga aattttagcg aaattaaaag aaacaaatga agaattttcg
     3481 aatcaggcgc tccgggtcct tgcttacggc tacaaacgga tgcctgctga tacaactgaa
     3541 ttaaaattag aagatgagca agatatcgtt ctagttggct taactgcaat gattgatccg
     3601 ccacgtgaag ccgtgtatgc atcgattgaa gagtccaaaa aagctggcat tcgtacagtc
     3661 atgatcaccg gtgaccataa aacaacggca caagcaatcg gccgtgacat tggtttaatg
     3721 gatgccgatg atatcgcatt aacaggccaa gaactagacg caatgccaga agaagaactc
     3781 gacaaaaaac tagaacatat cgcagtctac gcccgagttt caccagaaaa taaaatccgt
     3841 atcgtcaaag cttggcagaa aaaaggcaaa atcacagcaa tgactggcga cggtgtcaat
     3901 gatgcacccg ctttaaaaca agccgatatt ggtgtcgcaa tgggtagcgg aaccgacgtt
     3961 gcgaaagact ctgccgcgat gattctgacc gatgataatt tcgtttcgat tgtggatgcg
     4021 gttggcgttg gtagaaccgt ttttgacaat attaagaaat caattgctta tctatttgca
     4081 ggaaacctag gtgcgattat tgcgatttta ttcgcgctag tgctggactg gattaacccg
     4141 ttcactgcgt tacaattact atttatcaac ttagtcaatg actccttacc agcaatcgca
     4201 ctaggtatgg aaaaagcaga acctgacgta atgaaacgca aaccgagaga tattaacgaa
     4261 ggcatttttg ctggtggaac gatgcgcgcc gttatcagcc gcggtgtatt aatcggtatc
     4321 gctgttatca tctcacaata tatcgggttg caaatttcac cagagatgag tgttgcaatg
     4381 gcatttacta cgcttatcct agcacgtaca ttacaaacat ttgcagctcg ctcgaatgtc
     4441 caaaccgcat ttggcgcagg attcttcagt aacaaatacg taatcggtgc ggtattactt
     4501 tgtttcgtcc tatacggaat tacagtatta ccaggagctc gagaaatttt ctcaatccca
     4561 gcatcatttg gcctacatga atggtcgata gcagcggggc tagcacttgc agcagttgtg
     4621 atgatggaga ttattaaatt agttcagaat aagtttttca aataaattat ataaacacag
     4681 aaatcactcg ttttgcggag gatttctgtg ttttttcttt ctatccaaaa taactta
//
LOCUS       DABQVC010000199         4705 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.199,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000199 DABQVC010000000
VERSION     DABQVC010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4705
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.199"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            86..1335
                     /locus_tag="IBJ56_002480"
                     /pseudo
     CDS             86..1335
                     /locus_tag="IBJ56_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464074.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            1390..1770
                     /locus_tag="IBJ56_002481"
     CDS             1390..1770
                     /locus_tag="IBJ56_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAM3418724.1"
                     /translation="MNIVLIASLIFIAQTGLAFFQVRYYQHHMNKVADKYAGETGYYL
                     YSEMERLKFRTSAVAILVVNENRVVHECQILTGKTVFAKFKTFTNYHHKDLSEILTDL
                     SSKNKNTIQEKAIIKTVNSCMKAL"
     gene            1795..2316
                     /locus_tag="IBJ56_002482"
     CDS             1795..2316
                     /locus_tag="IBJ56_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sorbitol transporter subunit IIC"
                     /protein_id="HAM3418725.1"
                     /translation="MNYIEWFGTNFIGLFEAGGKQFVSFMTGIVPLLIVLLTFTYSII
                     AFIGEERVNRAIQFSAKNMILRYTLMPVLSVLMLTNPMAYTFGRFVKEHQKPAFYDSV
                     VSFLHPVTGLFPYANAGELFVYLGIANGVVEAGYSMSSLAVRYFLAGIVVILMRGVIT
                     ESITKFLMRKEKV"
     gene            2337..3323
                     /locus_tag="IBJ56_002483"
     CDS             2337..3323
                     /locus_tag="IBJ56_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HAM3418726.1"
                     /translation="MYQSIHVNKGQGGWGVGLDITPSEPRTKVVSITGGGIHPVALKI
                     AELSGAEAVDGFKNSIPEEEMMCVVIDCGGTARIGVYPMKRIPTVDVLPSSPSGPLAK
                     HITEDIFVSGVKPEDIEVRDRSTEPGKPFDREKFKEDYAKIKEDQEEASQLKEGFLVK
                     FSRGIGKAMGVFYQAGRDSVDMLIKNIIPFMAFISMIIGIINYTGIGKLIANTLSPLA
                     GSLWGMLLIAFICSLPFLSPILGPGAVIAQVIGVLIGSQIAIGAIPVTYALPALFAIN
                     AQAGCDFIPVGLSLAEAKPKTVQFGVPAILYSRMITGVLAVVIAWVFSIGMY"
     gene            3342..3692
                     /locus_tag="IBJ56_002484"
     CDS             3342..3692
                     /locus_tag="IBJ56_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HAM3418727.1"
                     /translation="MTISKIMEIGPLVPAFEEEKIVILFGPTATNELREISVIHEFQD
                     VPNNALTKGNTLLIGEQAYTIEEVGSDANKNLEELGHISVYFRSGQNEVLPGAIVVSP
                     EIFPTITVGDSIQF"
     gene            3803..>4705
                     /locus_tag="IBJ56_002485"
     CDS             3803..>4705
                     /locus_tag="IBJ56_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAM3418728.1"
                     /translation="MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATKTVTD
                     TMDRKVEVPTTPKRIVALQNVSEMEILGVKPVGTTDYYITTYPEATKGTESVGNDKPS
                     IEKIANLKPDLIIISDYQKDLLENLEKVAPVYITHFGDTPDKQLSNIANLLNKKAEKE
                     KWDKDYAASSKEAKATLKDAGVANEKAAVIQFYGKEIYVHDAKVFDGLYSGAGFTPTD
                     AAKANKETKAISSEAIPEYAAGADRLFILMPADGNTDSVDEMLKGVWKDIPAVKKNQV
                     YKVDNTKWSDYSASAQLYQMEDAVK"
BASE COUNT         1492 a          843 c          977 g         1393 t
ORIGIN      
        1 ttacaaaatt catttgttag gataaaatag ctttatccgg agttttattt taataaatga
       61 aaacgattac taggaggaac ttgaaatgac tttatataga cagttacttg ctcgtgagaa
      121 cgaaaaaatc cgattcgcgt tggtgttatc ggcgctggtc aaatgggatt cggtatgatt
      181 tcgcaaatcg ccgctattcc aggtatgagt atcgttggta ttagcgatat tcatgtagaa
      241 gcagcacaaa aagccgcaga tgcttacaat gccacagcaa caaaaaaaga aaaaattcta
      301 ttatctaatg actttaaaga aattattcat tctgatcttg tagaagtgat tgttgatgct
      361 actggtgttc cagaagtcgg cgcaaaaatt tccctagaaa ctttacttgc taaaaaacaa
      421 ctcgttttac ttaatgtaga aattgatatt actatcggac cactaatgaa aaaactatat
      481 gacagcgctg gtctcgtata tactggctct gatggcgacg aaccggctgc gataactgaa
      541 ctttacgaat tttccaaatc tatgggtatg gaagtccttg tcgctggtaa agggaaaaat
      601 aataaactta aaatcagcgc taaccctgat agctgtcaag cggaagccga tgggaaaaat
      661 atggcgtctc acatgctagc tgctttccaa gatggaacaa aaacaatggc agaaatgaat
      721 ttactttcta atgctattgg ttatgtccca gacgttgttg gaatgcatgg tatttcaggt
      781 gacgttgatt cggtcatcaa agatctagac ttaaaagacc aaggtggtat tttaaacaaa
      841 tttggcgttg tagaatatgt agacggtttg gctcctggcg tattcgttat cgtcaaaggg
      901 caaaacgaag gcgttagtca cgaacttagc tacctcatga aaaaaggcga ccgggatcat
      961 cacattcttt atcgtcctta tcatctagct agccttgaaa cacctctaac cattgcaaaa
     1021 gctgtgttga accacgatca cgctattgtt ccaatgggcg caccagtttc tgaaacggtt
     1081 gcggttgcta aaaaagacat agctgccggt gaaaaattag atggcattgg cggtttctgt
     1141 gtacgcggtg tactggaaac tcacgtcgat atggcaacga atggtcatat tcctatcggc
     1201 ttgattagcg gtgaggtagt agcccgcaga aatatcaaag ctggcacatt tattactgac
     1261 gaagacgttt cattagatga atccactact gtttggaaac ttagaaaact gcaagatgaa
     1321 acatttaata aataatttca acttggtggg aagtgatttg tcttcccacc ctctaaggag
     1381 gaaaagtaaa tgaatattgt ccttattgct tccctcattt tcatcgctca gacaggtctt
     1441 gcttttttcc aagtgaggta ttatcagcat catatgaaca aagttgcgga taaatatgct
     1501 ggggaaactg gttattatct ttattccgaa atggaacgac tcaaatttcg cacaagtgct
     1561 gtagccattc tggtagtgaa tgaaaaccga gttgtacatg aatgccaaat tttaaccgga
     1621 aagactgttt ttgcaaagtt caagactttc accaactatc atcataaaga tttatccgaa
     1681 atattgacgg atcttagtag taaaaataag aatacaatcc aagaaaaagc aattattaaa
     1741 acagtcaaca gttgcatgaa agcgctttaa ataactaaaa aggagtgttt cctagtgaat
     1801 tatattgaat ggtttggaac aaactttatc ggcctatttg aggctggcgg caaacagttt
     1861 gtgagtttta tgacaggaat tgtccctctt ttaattgtcc ttttaacctt tacttactcg
     1921 attatcgcct ttatcgggga ggagcgagtc aaccgagcaa tccaattttc agccaagaac
     1981 atgattttgc gctatacctt aatgcccgtt ttatccgtac tgatgctaac aaatccaatg
     2041 gcttatacat ttggtcgttt tgttaaagag catcagaaac cagcttttta tgactccgtt
     2101 gtatcgtttt tgcacccagt tacaggatta tttccatatg cgaatgctgg tgaattattc
     2161 gtttatctag gcattgctaa tggtgtggtc gaagctggat atagtatgtc aagccttgca
     2221 gttcgttact tcctagctgg aatcgtggtt atattaatgc gtggtgtgat tacagaatca
     2281 attacgaaat tcttaatgcg aaaagaaaaa gtctgaaata gaaggaggca aatgaaatgt
     2341 atcaatcaat tcatgtgaat aaaggtcaag gcggttgggg agtcggacta gatattactc
     2401 cgagcgaacc gagaacaaaa gttgtttcta ttactggtgg tggtattcat cctgtagcac
     2461 tgaaaattgc cgaattatct ggagctgaag ccgtggatgg ttttaaaaat tcaattccag
     2521 aagaagaaat gatgtgtgtt gttattgatt gtggtggcac tgcgagaatt ggtgtttatc
     2581 cgatgaaacg tattccaaca gtcgatgtgc tcccttcttc tccatcaggt ccgctcgcaa
     2641 aacatattac agaagatatt tttgtttctg gcgtcaaacc tgaagatatt gaagttcgag
     2701 acagaagcac tgaacctggg aaaccatttg acagagagaa attcaaagaa gattatgcca
     2761 agattaaaga agatcaagaa gaagcaagcc aattaaaaga aggtttcctt gtgaaatttt
     2821 ctcgtggcat tggtaaagca atgggtgtgt tctatcaagc agggcgtgat tctgtggata
     2881 tgcttattaa aaatattatt ccgtttatgg cttttattag tatgattatc ggtattatta
     2941 attacactgg gattgggaaa ttaattgcga atacgctctc tcctttagct ggatcactct
     3001 ggggaatgtt attaattgct tttatttgta gtttgccatt tctttcacct attctcggtc
     3061 ctggagcagt tatcgctcaa gtaatcggcg ttctgattgg ttctcaaatt gcgattggtg
     3121 ctattccagt tacttacgcc ttaccagcac tatttgcaat taatgctcaa gctggttgcg
     3181 actttatccc cgtaggactc tctcttgcag aagctaagcc aaaaacggtt cagttcggcg
     3241 ttccagctat tctttatagc cggatgatta ctggtgtcct tgctgttgtt atcgcatggg
     3301 tattcagtat cggtatgtat taattttagg aggaatttgc tatgactata agtaaaatta
     3361 tggaaatcgg gccacttgtc cccgcttttg aagaagaaaa aatcgttatc ttatttggac
     3421 caactgctac caatgaatta cgcgaaatat ctgttataca cgaattccaa gatgtaccga
     3481 ataacgccct tacaaaaggg aacacgttac tcattggtga acaagcgtat acaatagaag
     3541 aagtcggctc agacgcaaac aaaaatctcg aagaacttgg ccatatttcc gtctatttcc
     3601 gctcaggaca aaatgaagtt ttaccgggag ctattgttgt ttctccagaa atttttccaa
     3661 caattacggt tggcgatagt attcaatttt aaacataaaa attttttgtg ctacatttca
     3721 ccttgtcaat cctccctgtt ttcgatataa ttacttttgt aacgataatg aaaatcattt
     3781 tcaattaggg aggaaataca caatgtacca aaagcataaa tgggctgcta ttttgatgac
     3841 tgtgctttta gcagtagtat taaccgcttg tggcagttct tcggataaag actcaagcaa
     3901 agaaaaggaa tccgcaacaa aaacggtcac tgatacaatg gaccgtaaag tagaagttcc
     3961 aacaacaccg aaaagaattg tcgcacttca aaatgtaagt gaaatggaaa ttcttggcgt
     4021 taaacctgtt ggtacaactg attattacat cactacatac cctgaggcaa caaaagggac
     4081 cgaaagtgtt ggtaatgaca aacctagtat tgaaaaaatc gctaatttaa aaccagactt
     4141 aattattatt agtgattacc aaaaggatct tttagagaac ttggaaaaag tggctcctgt
     4201 ttatatcacg cattttggtg atactccgga caaacaactt tcgaacattg ccaatctctt
     4261 aaataaaaaa gcagaaaaag aaaaatggga caaagattac gcggcaagct ctaaagaagc
     4321 aaaagcaaca ctcaaagatg ctggtgttgc gaacgaaaaa gcggcagtaa ttcaatttta
     4381 tggcaaagaa atctatgtgc acgatgcaaa agtctttgac ggcttatact ccggcgcagg
     4441 tttcacaccg acagatgctg ctaaagcaaa caaagaaaca aaagctattt ctagtgaagc
     4501 aattcctgaa tatgcagcag gagcagatcg tctctttatc ttaatgccag ctgatggcaa
     4561 taccgattct gtggatgaaa tgctaaaagg tgtttggaaa gatattccag ctgtgaagaa
     4621 aaaccaagtg tacaaagtgg ataatactaa atggagtgac tacagtgcct ctgctcaact
     4681 ttatcaaatg gaagatgctg taaaa
//
LOCUS       DABQVC010000200         4641 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.200,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000200 DABQVC010000000
VERSION     DABQVC010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4641
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.200"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..510
                     /locus_tag="IBJ56_002486"
     CDS             <1..510
                     /locus_tag="IBJ56_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3418729.1"
                     /translation="GVDTIFRMATSYGIDLGISQTTLILILLMTQLVAFPFTLLYGYL
                     AKRFSAKPLIFTAIFVYIIICIYAVFMKSALDFWILAMLVGTSQGGIQALSRSFFGKI
                     IPKKRSNEFYGFYNIFGKFSAIMGPALMGVITQITGKTQYGVASLIVLFLVGGILFVF
                     VKEKNLENL"
     gene            580..1179
                     /locus_tag="IBJ56_002487"
     CDS             580..1179
                     /locus_tag="IBJ56_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HAM3418730.1"
                     /translation="MKRYFIILILPILSIFAAVTMYFSWFQGWLYFYLKHVMATVSHM
                     GYITVGITAILLYFVTVQLVNWKTNKALLVFCYIIYFSILLCLLFGKASDTQGFSSDT
                     FGFVDTFLSGNLRVIIIGNVLAFVPIGFLLKKLGFFTALLSAGMLIFAVEGAQYMLHV
                     GFFDTGDVFLNVCGIMLGYIVIRFLSPRKYKELKVKPTS"
     gene            complement(1202..2368)
                     /locus_tag="IBJ56_002488"
     CDS             complement(1202..2368)
                     /locus_tag="IBJ56_002488"
                     /EC_number="2.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HAM3418731.1"
                     /translation="MKIGIDKIGFYTPAFYVDMVELAEARNIDPNKFTIGIGQDKMAF
                     APITQDSVTMGANAALQILDEEDLKKIDLVILATESGIDESKAGAVYIHRLLGIQPFS
                     RAIEIKEACYGATAGINLAKDYVAKHPDSKVLVIGSDIARYGLATGGEATQGAGAVAM
                     VIAADPRCITLEDDNVFYTEDIMDFWRPVYSEYACVEGKYSTEQYIHFFQTIWEKYSA
                     KFGKNLEDFAAICFHLPYTKMGKKALDTIIETAPTEVQERLLENYRLSTLYSRNVGNI
                     YTGSLYLSFISLLDNQADLQAEDKIGFFSYGSGAVGEFFHGVLQPDYKKYIRKDEHAE
                     LLANRTKLAIPDYETKFKQQLPKDGSTFEVDPASDPATIVLTGIQEHKRQYIKK"
     gene            2518..3687
                     /locus_tag="IBJ56_002489"
     CDS             2518..3687
                     /locus_tag="IBJ56_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HAM3418732.1"
                     /translation="MKEVVIIDAVRTPIGKFGGSLKDISAVDLGATALKGVLERANIA
                     PERVDQVIFGNVLQAGLGQNVARQIAIKAGIPYKVPGVTINEVCGSGLKSVMLGRQAI
                     QLGEADIVAVGGTENMSQAPLLLNPELAGEEIDPKKLRNSMLIDGLTDVYGEYHMGIT
                     AENVAEKFSVTREEQDEFAHNSQMKAANAQEKNLFEEEIIPVKLPDGSFFEADETIRA
                     NSTLEKLATLKSVFKEGGTVTAGNASGINDGASAIILMSKEKAVAENIPYIATIKVTS
                     EVGVDPALMGYAPYYAVNEALNKGGYSIDDIDLFHLNEAFASQSVAVARDLKIPEEKL
                     NIYGGAIALGHPIGASGARIIASLLNELKHENKHIGVASLCVGGGIGIAIILEKA"
     gene            3874..>4641
                     /locus_tag="IBJ56_002490"
     CDS             3874..>4641
                     /locus_tag="IBJ56_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HAM3418733.1"
                     /translation="MKHTKKITFSFIIFMTILSITFNPFSAKAAPLMLNLPEPQVDQL
                     YIGDDYITGKLQQEIPMHYPGNAAYVLFNNKQYNITDYTVENDVNFRLKLPKTLEAGD
                     TLNYFTITGNVLDPVAYPGQESYKLAGPFTPIEKANIQINYVDETNQTLATSDTLSGK
                     LGETYTTSPKAIDGYQVKETPTNATGTYTTNTETIQVNYVYEKTAVEGANVSVEYIDE
                     ATNESIAPTETLSGKIGATFQAEVKELDGYELSQVPSN"
BASE COUNT         1480 a          851 c          858 g         1452 t
ORIGIN      
        1 ggggttgata caattttccg catggcgaca tcatacggga ttgatcttgg gatttctcag
       61 acgacattaa ttttaattct tttaatgaca caactcgttg catttccgtt cactttatta
      121 tacggatact tagccaaacg tttcagtgca aaaccgctta tctttaccgc gatttttgtt
      181 tatattatta tttgtattta tgcggttttc atgaaatctg cacttgattt ttggatatta
      241 gcgatgttag ttggaacttc gcaaggtggt attcaagcat taagtagatc attcttcgga
      301 aaaattattc ctaaaaagcg ttcgaatgag ttttacggat tttataatat tttcgggaaa
      361 ttttcagcaa tcatggggcc cgcacttatg ggtgtaatca cacaaattac tggaaaaacg
      421 caatacggtg tggctagttt aattgtactt ttcctcgttg gcggtatttt atttgtgttc
      481 gtaaaagaga aaaacttaga aaatctttaa acccttttaa gaaagtcctt attttcacat
      541 gttatccttg aggtagcctt tgaaaaggag gacgccagga tgaaaagata ctttataatt
      601 cttattttac caatcctttc tatatttgct gcagtgacga tgtatttttc ctggtttcag
      661 ggatggcttt atttttactt aaagcacgta atggccacag ttagtcatat gggctacatt
      721 acggttggca tcacggcgat attactctat tttgtcacag tacaattagt aaactggaaa
      781 acaaataaag cattacttgt tttttgctac attatttatt tcagtattct actctgtttg
      841 ttattcggaa aggcttccga cacgcaagga ttttcaagtg atacttttgg gtttgttgat
      901 acatttttat caggtaattt acgcgtcatt atcataggaa atgtattagc ctttgtacca
      961 attggttttt tactcaaaaa attaggtttt ttcaccgcat tactatcagc tggaatgttg
     1021 atattcgctg tagaaggggc gcagtacatg ctacatgtag gattctttga caccggagat
     1081 gtattcctga atgtttgtgg tatcatgctt ggctacattg tgattcgttt tttatcccca
     1141 agaaaatata aagagctcaa agtaaaaccg actagctgat ttagcctagt cggttttttg
     1201 attatttttt aatatattga cgtttatgct cttgaatacc agttaataca atggttgctg
     1261 ggtcactagc aggatccact tcaaacgtcg aaccatcttt aggtaattgt tgtttgaatt
     1321 tcgtttcata atctggaata gcaagtttcg tacggtttgc taacaattcc gcatgttcat
     1381 ctttacggat atatttttta tagtcaggtt gtagcactcc atggaagaac tcgccaacag
     1441 caccagaccc gtaactaaag aagccaattt tatcctctgc ttgtaaatct gcttgattgt
     1501 ctaacaagga aataaagctt aaatagaggg aaccagtgta aatattaccg acattgcggc
     1561 tataaagcgt acttagacga taattttcta gcaatctttc ttgaacctca gttggagctg
     1621 tttcaataat agtatctaac gcttttttac ccatttttgt atatggtaag tggaaacaaa
     1681 tagctgcaaa atcttctaag ttcttgccaa attttgctga atacttttcc caaatggttt
     1741 ggaaaaagtg aatgtactgc tccgtcgaat atttaccttc tacacatgca tactcagagt
     1801 aaacagggcg ccagaagtcc ataatatctt ctgtataaaa cacattatcg tcttcaagtg
     1861 tgatacaacg tggatcagca gcaataacca tcgcaacagc tccagctcct tgagttgctt
     1921 cgccgccagt tgccaagccg taacgagcaa tatccgatcc gataaccagt actttactat
     1981 caggatgttt cgcaacataa tctttcgcta aattaattcc tgcagtggct ccgtagcaag
     2041 cttcttttat ttcaattgca cgagagaacg gctgaatacc tagcaaacgg tgaatataaa
     2101 ccgcgccagc ctttgactca tcaattcctg attctgtcgc caaaataact aaatcaattt
     2161 ttttcaaatc ttcttcatct aaaatctgta aagctgcatt tgcgcccatt gttactgaat
     2221 cttgcgtaat cggagcaaaa gccattttat cttggccaat accaatagta aacttgttag
     2281 gatcaatatt tctagcttca gcaagttcta ccatatcaac ataaaatgca ggagtataaa
     2341 aacctatttt atcaattcca attttcatat gtaagctcaa gtcctttata ttttatttgt
     2401 aagtacttta attttagtag aaaaatgcac aaaatacaat acattgggct taatctagtg
     2461 agtttttagc tagtttcatg atataatacg gatagattac atttaaagga gattgctatg
     2521 aaagaagtag ttataataga tgcagttaga acaccaattg gaaaatttgg tggtagtttg
     2581 aaagacatca gtgcagtaga ccttggcgct accgctctaa aaggtgtttt agaaagagcc
     2641 aatattgctc cagaacgggt ggatcaagtg atttttggta atgtattaca agctggactt
     2701 ggccaaaatg tagctagaca aatcgctatt aaagcaggaa ttccttataa agtacccgga
     2761 gtcacaatca atgaagtttg tggatctggc ttaaaatcgg ttatgcttgg taggcaagca
     2821 attcagctag gggaggctga catcgtagcc gttggtggga ccgaaaatat gtcccaagca
     2881 ccacttttac ttaatcccga gctagctggc gaagaaatcg atccaaaaaa actaagaaat
     2941 agcatgttaa ttgatggttt aacagatgtt tacggcgagt atcacatggg aattactgca
     3001 gaaaatgttg cagagaaatt ctccgtaacc agagaagaac aagatgaatt tgcccataac
     3061 tcacaaatga aggccgcgaa tgcacaagaa aaaaaccttt ttgaagagga aattattcct
     3121 gtaaagcttc cagacggttc attttttgaa gccgatgaaa cgattcgcgc gaattcaact
     3181 ctagaaaaat tagctacttt gaaaagcgta ttcaaagaag gtggaacggt tacagccggc
     3241 aatgcttccg gtatcaatga tggagcttcc gcaattattt taatgtcgaa agaaaaggca
     3301 gtcgcggaaa acattcctta tatcgcaaca atcaaagtaa cctctgaagt tggtgtcgat
     3361 ccagcactta tgggttacgc gccatactat gcagtaaatg aagctttaaa caaaggtgga
     3421 tattctatcg atgacattga tttattccat ttaaacgaag cttttgcatc gcagtcagtt
     3481 gcagtggctc gtgatttaaa aattccagaa gagaaactta atatttacgg tggagcaatt
     3541 gcactaggcc atccaattgg agcttctggt gcacgcatta ttgcctcatt gttaaatgag
     3601 ttaaaacatg aaaataagca catcggtgtc gcttccttgt gtgttggtgg tggtattggt
     3661 attgcaatta tccttgaaaa agcttgatag tagtacattt aatgttaata aaaagctaaa
     3721 atcagctaat agttgatttt agctttttat gatttcgttt ttgtcttttt tgtgaacaaa
     3781 ccgccaattt gttttgtgaa acttcttaca aaaacaagta tttgtacggt tttggtgcta
     3841 gaatgtaatt attctaacaa gcaggaggac attatgaagc acactaaaaa aattacattt
     3901 agctttatta tatttatgac aattctaagt atcactttta atcctttttc agccaaagca
     3961 gcacccttaa tgcttaattt acctgaacca caagtggatc aactctatat tggagatgac
     4021 tatattaccg gaaaattaca acaagaaata cctatgcatt atcccggcaa tgcagcttat
     4081 gtgcttttta acaataaaca atataatatc accgactata cggttgaaaa tgacgtgaat
     4141 ttccgtctaa aattacctaa aacgctggaa gctggagaca cactaaacta ttttaccata
     4201 actggtaacg tacttgatcc agttgcttat cctggacaag aatcatacaa attagccgga
     4261 cctttcactc caattgaaaa ggcaaatata caaattaatt atgttgacga aacaaaccaa
     4321 acacttgcaa cgtccgacac attatccgga aaactcggtg aaacttatac aacatctcca
     4381 aaagcaattg atggctacca agtaaaagaa acaccaacaa acgcaacagg cacctacaca
     4441 acaaacactg aaacaataca agtgaattac gtatatgaaa aaacagcagt agaaggggca
     4501 aacgtatctg tagaatatat agatgaagca actaatgaat ctatcgcccc aaccgaaaca
     4561 ctttctggaa aaataggcgc gactttccaa gcagaagtaa aagaactcga cggctacgaa
     4621 ttaagccaag tgccatcaaa t
//
LOCUS       DABQVC010000201         4628 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.201,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000201 DABQVC010000000
VERSION     DABQVC010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4628
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.201"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..505
                     /locus_tag="IBJ56_002491"
     CDS             <1..505
                     /locus_tag="IBJ56_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HAM3418734.1"
                     /translation="GLEKMDTGEIFIDEEKIDPMSRKDVENTIGVVFQEFHLFPHLSV
                     LDNLILAPTLARKTKKADAVKEAERLLGLLDLADKANSMPYQLSGGQKQRVAIARALA
                     MNPKVLLFDEPTSALDPDLRDHVAALILSLKKVGITQIIVTHDHTFAEKVADQMMEVE
                     PLKKEAI"
     gene            507..1322
                     /locus_tag="IBJ56_002492"
     CDS             507..1322
                     /locus_tag="IBJ56_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3418735.1"
                     /translation="MKKGLLITVMLMVMLALGACSSGESKEDQWSRIKKDKEVVIGLD
                     DSFVPMGFRDKDDNLVGFDIDLAKAVFAEYGIKAKFTPIDWTMKESELKNGSIDLIWN
                     GYTVTDARKKQVAFSQPYMKNEQVLVTLKSSNINQFSDMKNKTLGAQNGASSIDDMAK
                     KPEVLTDIINNNEPELYDTFDTAFIDLNNKRIDGLIIDEVYARYYIDKQKNKDDYNTI
                     TGGFDATDFAVGMRKSDKELQTKINEAFEKLYKEGKMQEISKKWFGDDEIAKQ"
     gene            1414..2520
                     /locus_tag="IBJ56_002493"
     CDS             1414..2520
                     /locus_tag="IBJ56_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase family
                     protein"
                     /protein_id="HAM3418736.1"
                     /translation="MLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNA
                     SWEVAKKKFPVLSTVTSTFEVYNGGSTYEERDRLVAIMETNKMDAIIAVGGGKIADVC
                     KATAAVLRLPVIILPTLASTCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMIL
                     DSPKELLVAGIGDTLAKWYEADVIINSLPTKSVEIEIAHFAAKMCRDNLLQYSEEALA
                     AMDKQVLNEAFVKIIETNILVGGMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGN
                     KVAYGILVQLVIENRWDEIERLLPFYSELGLPMSLYDMGLATLAEETLVAVSKRATEP
                     HETIHMMPGEMTADVVLNAMKQLEDSMAMKRVAK"
     gene            2523..3041
                     /locus_tag="IBJ56_002494"
     CDS             2523..3041
                     /locus_tag="IBJ56_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAM3418737.1"
                     /translation="MIIRKEQPQDYEAIRRVNEEAFKGTVEADLIESIRTSDYYQPGL
                     SLVAEAEDGLIVGYIMFSEISLEAAGRSRFILALAPLAVLPAYQGTRVGSRLMEEGIR
                     LSREKAYPAIAVLGHADYYPRFGFIPSEQFAIPAPFDVPAEYFMLLELYDGSLENLAG
                     TIHYPAAFSENN"
     gene            complement(3038..3925)
                     /locus_tag="IBJ56_002495"
     CDS             complement(3038..3925)
                     /locus_tag="IBJ56_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAM3418738.1"
                     /translation="MELRQLKYFMEVARVEHMTKASENLHVAQSAVSRQITKLEEELG
                     VHLFDRVGRNMQLTSVGQDFLKQAAIALNELQKAEALVTEYTDPAKGTVRVGLPNSLS
                     TKVLPSVISTFREKYPQITYQFMEGTNEELTEMLLSGVLDMTFLSPVPESSEQIEAIR
                     FFDEKLKLIVPKTHPLAENFTVSLKELASEKFVLYPEDFDLYKIVTKAANKKGFEPQI
                     AFQSRDFYTIQGLVGAGLGISILPEMILDGAIFKETKSIALRDKELRRSVGIITTKKR
                     NLSPSENLFRSFIISFFSN"
     gene            4118..>4628
                     /locus_tag="IBJ56_002496"
     CDS             4118..>4628
                     /locus_tag="IBJ56_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HAM3418739.1"
                     /translation="MKQTNLPKKHGLYNPENEHDACGIGFVANIKKISSHKIVEQGIH
                     MLCQLKHRGGEVGGDTGDGAGILLEISDSFFRRECSKLGINLPEKYHYAVGMFNFPQN
                     KTERECLMAETEKLIASEGQTFLGWRKLPTDVTKVGAGARKTEPAIYQLFIQKNAKLD
                     EAGFERALYL"
BASE COUNT         1482 a          769 c         1032 g         1345 t
ORIGIN      
        1 tggactggaa aaaatggata caggtgaaat ttttattgac gaggaaaaaa ttgatccaat
       61 gtcgagaaaa gatgtggaaa atacgattgg tgttgttttc caagaattcc acttatttcc
      121 gcatttaagt gttttagata acttgatttt agcaccgacc cttgctcgaa aaacaaagaa
      181 agcagatgcc gttaaagaag cagaacgatt acttggctta cttgatttag ccgataaagc
      241 aaatagtatg ccgtaccaat tatcaggcgg acaaaaacaa cgggtcgcga ttgccagagc
      301 gcttgcgatg aatcccaaag tgctgctatt tgatgaaccg acatccgctt tagatcctga
      361 cttgcgcgat catgttgcag cattaatttt aagtttgaaa aaggttggta ttacgcaaat
      421 tatcgttaca catgatcaca cttttgccga aaaagtagcg gatcaaatga tggaagtaga
      481 accattaaaa aaggaggcaa tctaacatga aaaaaggatt attaataact gtaatgttaa
      541 tggtaatgtt agcgctggga gcttgttcca gcggtgaatc taaagaggac cagtggagta
      601 gaattaaaaa agataaagaa gttgtaattg gtttagatga tagttttgta ccgatgggat
      661 ttcgtgataa agacgataac ttagttggct ttgatattga tttggcgaaa gctgtatttg
      721 cagaatatgg cattaaagca aaattcacac cgattgactg gacgatgaaa gaatctgaac
      781 tgaaaaacgg ctcgattgat ttaatttgga atggatatac tgtgacggat gcgaggaaaa
      841 aacaagtcgc ttttagtcag ccttacatga aaaatgaaca agtattagtc actttaaaat
      901 caagcaatat taatcaattt agcgacatga agaataaaac gctcggagca caaaatgggg
      961 caagttcgat cgatgacatg gcgaaaaaac cagaagtgct aacagacatt ataaataata
     1021 acgaaccaga attatacgat acgtttgata cagcttttat tgatttgaat aacaaacgaa
     1081 tcgatggttt aatcattgat gaagtgtacg cgcgttatta cattgataaa caaaaaaata
     1141 aagacgatta caacactata acaggcggtt ttgatgccac agattttgct gtaggaatgc
     1201 gcaaaagtga taaagaactg caaacaaaaa tcaatgaagc ttttgaaaaa ttatacaaag
     1261 aaggaaaaat gcaagaaatt agtaaaaaat ggttcggtga tgacgaaatc gctaagcaat
     1321 agtgcgattg acagtaggtt taagttccta tacaatttga attataaatg tcgcagccga
     1381 atatccgacc gtgccagaca gaagggatga tttttgttga ataaagaatt gattgttcgc
     1441 ggagctccgc aagaatattt atgccaagta ggcgcgtggg atacattacc tactcaccta
     1501 gaacgccgcg gtttgaaaaa tgtattagta gttcgtggaa atgcttcttg ggaagtcgct
     1561 aaaaagaaat tccctgtttt atcaactgtt acatctactt ttgaagtata taatggtggt
     1621 tctacctacg aggagcgcga tcgtctggtg gcaatcatgg aaacaaataa gatggatgcg
     1681 attatcgcag taggtggcgg aaaaatagct gacgtatgta aagcgacagc agcagttcta
     1741 cgtttaccag tcattatctt accgacactt gcatcaactt gtgccgctta tacgccactt
     1801 agtgtgatgt acgacgaaga gggcgctatg attcgttacg atgtgtttgc gagtagtaat
     1861 gcgctgttat taattgatcc ggaaatgatt ttagactcac cgaaagagtt actagttgct
     1921 ggaattggcg atacgttagc caaatggtac gaagcagacg tgattattaa ttccttacca
     1981 actaaatcag tcgaaattga aatcgcgcat tttgctgcca aaatgtgccg tgataacttg
     2041 ttgcaatata gcgaagaagc acttgctgcc atggacaaac aagtattgaa tgaagcgttt
     2101 gttaaaatta ttgagacgaa tattttagtt ggtggaatgg tcggtggttt tggcgatgat
     2161 tatggacgtt gtgcaggagc gcattcgatt catgacgcgc taacgatggt tccagaaaca
     2221 catcacttat tgcatggtaa taaagtagct tatggtattt tagttcaatt agtaatagaa
     2281 aatagatggg atgaaatcga gcgtttgttg ccattttatt ctgagctcgg tcttccgatg
     2341 agtttatatg atatgggact tgcgacactt gcggaagaaa cgcttgtggc cgtatctaaa
     2401 cgtgcaacgg agccacatga aacaatccat atgatgcccg gtgaaatgac agctgatgta
     2461 gtattaaatg cgatgaaaca gttagaagat agtatggcaa tgaaacgagt ggctaagtaa
     2521 aaatgattat tcggaaagaa caaccacaag attacgaggc cattcgtcgt gtgaatgagg
     2581 aagcttttaa gggtactgtg gaagcagact tgattgaaag tatccggaca tccgattatt
     2641 atcaaccagg tttatccctt gtcgcagaag cggaggatgg acttattgtt gggtacatta
     2701 tgtttagtga gatttcgctt gaagcagccg gacgaagcag atttatttta gcacttgcgc
     2761 cacttgctgt tttacctgcg tatcaaggga cgcgagttgg ctcgagatta atggaagaag
     2821 gaatccgttt atcacgcgaa aaagcatatc cggccattgc tgtgcttgga catgctgatt
     2881 attatccgcg atttggcttt attccttctg agcagtttgc tattcctgcg ccatttgatg
     2941 tgcctgctga atactttatg ttattagaat tatatgatgg tagtttagaa aatttagctg
     3001 gaactatcca ttatccagct gcattttctg aaaataatta attcgaaaag aacgaaataa
     3061 taaacgaacg gaacaaattc tcggaagggg ataggttccg tttttttgtc gtaataatcc
     3121 cgaccgaacg ccgcaattct ttatcacgca aagcgatact tttcgtttcc ttaaaaatcg
     3181 ctccatctaa aatcatttct ggcaaaatgc taataccaag acctgctccg acaagtcctt
     3241 gaattgtata aaaatctcta ctttgaaatg ctatttgtgg ctcaaatcct tttttattgg
     3301 cagcttttgt tacgatttta tataaatcaa agtcttctgg ataaagtacg aacttttcgg
     3361 aagcgagctc ttttagtgaa acggtgaagt tttcagcaag tggatgggtt ttagggacaa
     3421 ttagcttcaa tttttcatca aaaaaacgaa tggcttcaat ttgttcgcta gattctggga
     3481 cgggcgataa aaaagtcata tcaaggacgc cgcttaagag catctcggta agttcttcat
     3541 tggtgccttc cataaactgg taggtaattt gcggatattt ttcccgaaag gtcgaaataa
     3601 cggatggcaa cactttggta gacagggagt tcggtaagcc gacgcgaaca gttccttttg
     3661 cgggatcagt atattcggtc acgagtgctt cggctttttg tagttcattt aaggcgattg
     3721 ctgcttgttt taagaaatct tgaccaacgc tggtgagttg catatttctt ccaacacggt
     3781 caaataaatg cacgccgagt tcttcttcga gtttcgttat ctgtctacta acggcagatt
     3841 gggctacgtg taaattctca ctagctttgg tcatatgctc gacacgggct acttccataa
     3901 aatactttaa ttgtcgtagt tccatttctt acctccaatt gttctcgaaa tgagattgtt
     3961 ttattctatt atatatattg tttcgataaa tgaaaaggaa taaaatagat actacaagaa
     4021 atgtaaggta agctgaatcg ctggttaatt atcagttaat ttaaataatt accagaaaga
     4081 cttagaagga ttcggttttt gaagaggagg aactaggatg aaacaaacta atttaccaaa
     4141 aaaacacggc ctatacaacc cagaaaatga gcacgatgct tgtggaattg gcttcgtagc
     4201 aaatattaaa aagatttctt ctcataaaat tgtcgaacaa ggtattcata tgctttgtca
     4261 attaaagcac cgcggtggag aagttggtgg ggatacgggt gatggcgctg gtattttact
     4321 tgagatttca gactctttct tccgacgcga gtgtagcaaa ctaggtatta atttgcctga
     4381 aaaatatcat tatgcggttg ggatgtttaa tttccctcaa aataaaacag aacgcgaatg
     4441 tttaatggcc gaaacggaaa aactgattgc gagtgaaggt caaacattcc ttggttggcg
     4501 caaattacca actgatgtaa caaaggtggg tgccggtgca agaaaaacag aaccagcgat
     4561 ttatcagcta ttcattcaaa aaaatgccaa gttagacgaa gctgggtttg aacgagcact
     4621 ttatttaa
//
LOCUS       DABQVC010000202         4614 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.202,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000202 DABQVC010000000
VERSION     DABQVC010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.202"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            31..558
                     /locus_tag="IBJ56_002497"
     CDS             31..558
                     /locus_tag="IBJ56_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HAM3418740.1"
                     /translation="MYLPKEKEIIQIKSYKHNGKLHRTWKKTVVLKSTENIIIGGNDH
                     TLVVEADGRKWVTREPSICYFHSDYWFNVISMIREDGIYHYCNLGTPFAVDEQALKYI
                     DYDLDIKVFPDGRFHLLDEGEYEQHRRQMKYPDSIDRILRHNVDVLSHWILDKKGPFS
                     PDYIDIWYEKYKEYR"
     gene            complement(600..1688)
                     /locus_tag="IBJ56_002498"
     CDS             complement(600..1688)
                     /locus_tag="IBJ56_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HAM3418741.1"
                     /translation="MKFGARILKTGIAITLALFIAQLCNSPSPSLAGISAVFAIQPSI
                     YRSYRTILERAQGNVIGAIIAIIFGLYIGNDFILIGVASIICVALLMQFRLENTIGLA
                     VVTLIIVMDSPGNDFLEIALIRFGTIMLGLLAAFIVNLFFLPPKYEVSLFQLIYNTNS
                     EIVRWIKLNLRHAADFPLLKKDMEWMQKQLNQTRNLYGLYREERTFLKKNAISKGRKI
                     AVYRQMLLCSQKGFELLKIQHRYENDYLQLPPDKQELIRQHIDYLTDKHEQLLLTYID
                     KVSIDLEYVESHLAQDPQDLMQLFLREMRETEKDEYEDMMDKYHLMRIIASVFAYQET
                     IDYLEKLIHSFKLRHTKENQIDINVNEE"
     gene            complement(1794..3092)
                     /locus_tag="IBJ56_002499"
     CDS             complement(1794..3092)
                     /locus_tag="IBJ56_002499"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HAM3418742.1"
                     /translation="MDHSMSKKLHDEALLHIVGGVNSPSRSNKGVGGGIPVTMERASG
                     AYFYDVDGNKYIDYLAAFGPIITGHAHPHITEAITKAAQNGVLYGTPTKHEITFAKML
                     KEAIPSLEKVRFTNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHFDLVLVEAGSGP
                     STLGIPDSAGVTKSTAEEVITVPFNDLASFKEALAVWSDQVAAVLVEPIVGNFGMVAP
                     EDGFLEAVNELAHANDSLVIYDEVITAFRFMYGGAQNYLGVIPDLTAMGKIIGGGLPI
                     GAYGGRIDIMEKVAPLGPAYQAGTHAGNPASILSGIACLEVLQEEGLYERFEKYGSML
                     KDGIEKAALKHGIAVTVNQIVGALTVYFTEDPVTNYAEAGATNGELFGRFFKGMLEEG
                     INLAPSKYEAWFITSAHSEADILETIQAVDTVFGKMVQDN"
     gene            3237..4178
                     /locus_tag="IBJ56_002500"
     CDS             3237..4178
                     /locus_tag="IBJ56_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase"
                     /protein_id="HAM3418743.1"
                     /translation="MNILFTLDVPEHLQTLQAEKFPEDTFYYESNDHFANLAEIDIIV
                     TYGSNITEAKIKQASNLKFIMVFSAGVDSLPREIIQEKKIKVANVRGIHAVPMGEYAL
                     SFMLSHVKKATFFYQMQKEKNWASEEPITELAGKTLVVAGTGAIGAKVAEFAQAFDME
                     IIGVNTTGHPVKPFSKTYAMSDIEKVAPLADFFVSVLPHTDKTTAIYSLSFFRKMKDN
                     AVFINIGRGSAVELKVLEQASKEQLINHFYLDVVPEEPLSEDNYLWEASNVTITPHVS
                     GHSDKYLERSFKIWFENIKHLKENTKLRNEIDLNKGY"
     gene            4261..>4614
                     /gene="perR"
                     /locus_tag="IBJ56_002501"
     CDS             4261..>4614
                     /gene="perR"
                     /locus_tag="IBJ56_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HAM3418744.1"
                     /translation="MAVSNATLKEAVDVLKKTGVRITPQRHAILEFLINSHTHPTADD
                     IYRALEGNFPNMSVATVYNNLRVFRDAGLIKELSYGDASSRFDFSTSNHYHAICNVCG
                     KIVDFQYPGLDEVEHF"
BASE COUNT         1527 a          885 c          838 g         1364 t
ORIGIN      
        1 tgatagtaca tgaggaaagt aggataaagg atgtacttac ccaaagagaa agaaataata
       61 caaatcaaga gctacaaaca taacggaaaa cttcatcgta cttggaaaaa gacagtggtg
      121 cttaaatcta cggagaatat tattatcggc ggaaacgacc acacattagt tgtggaagca
      181 gacggacgta aatgggtaac gcgcgaacca tctatctgct attttcatag tgattactgg
      241 tttaatgtaa tttccatgat tagagaagac ggcatttatc attactgcaa tctagggaca
      301 ccatttgcag tagatgaaca agcgcttaag tacattgact atgacctcga tattaaggtt
      361 ttcccagatg gaaggtttca tttgcttgat gagggcgaat acgaacaaca ccgtcgccaa
      421 atgaagtacc cagactcaat tgaccggata cttcgacata atgtggatgt gttaagccac
      481 tggattttgg acaaaaaagg tccgttttcc cctgactaca ttgacatttg gtatgaaaag
      541 tacaaagaat accgttaaaa aaacgagctt tggagtctat ctccaagctc gttttttgtt
      601 tattcttcat tgacattaat atcaatttgg ttttctttcg tgtgtctgag tttaaaacta
      661 tgaattaatt tttctaaata gtcgattgtc tcttggtaag caaaaacaga ggcaataata
      721 cgcattaaat ggtatttatc catcatatcc tcatactcat ctttttctgt ttccctcatc
      781 tcacgcaaga aaagctgcat caaatcttgg ggatcctgtg ctaaatgcga ctctacatat
      841 tcaagatcaa tcgaaacttt atcgatgtat gtcagtaaaa gttgttcatg tttatccgtt
      901 aagtaatcga tatgttgtct gattaactct tgcttatctg gaggcagttg caaataatca
      961 ttttcatagc gatgttggat ttttaaaagc tcaaaacctt tttgagaaca aagcaacatt
     1021 tgcctatata cagcaatttt ccgccctttt gaaatggcat ttttctttaa aaaagtacgc
     1081 tcttctctgt ataaaccata taagttacgc gtttgattta actgtttttg catccactcc
     1141 atatcttttt ttagaagagg gaagtccgca gcatgacgca agtttaattt aatccaacga
     1201 acgatttcac tattcgtatt ataaattaac tgaaacaatg aaacttcata tttcggtggt
     1261 aaaaagaata gattgacaat aaatgccgca agtaaaccta acataattgt cccaaaacga
     1321 ataagtgcga tttctaaaaa gtcattacca ggagaatcca ttacaataat gagtgtcacg
     1381 actgcaaggc caatcgtatt ctccaagcgg aattgcatta ataaagcaac acagataatc
     1441 gaagcgacac caattaaaat aaaatcatta ccaatataaa gtccaaaaat aattgcaatg
     1501 atggctccaa ttacgttccc ttgcgcccgt tctaaaatag ttcgatagga cctataaata
     1561 gaaggttgga tagcaaaaac ggcggaaatg cctgccagag atggagaagg tgaattgcaa
     1621 agttgagcga taaaaagcgc caatgtgatt gcaataccag ttttcaaaat tctagctccg
     1681 aatttcatgg aaggttattc ctttctatag actatttgag cgggattttt aagttttccc
     1741 gctcattctt cttctattat aacgtttctc accagtttat aaagtaatat tacctagtta
     1801 tcttgaacca tttttccaaa aacagtatca actgcttgga ttgtttctaa aatatcagct
     1861 tccgagtgtg cggaagtgat gaaccatgct tcatatttag aaggcgccaa attaatgcct
     1921 tcctctagca ttcctttaaa gaaacgaccg aataactcgc catttgtagc gccagcctca
     1981 gcataattag tcacaggatc ttccgtaaag taaacagtta gagcaccgac aatttggtta
     2041 accgtaacag caatgccgtg ttttagcgcg gctttttcaa tgccatcttt cagcatcgag
     2101 ccatattttt caaagcgctc atacagtcct tcttcttgta aaacttcgag acaagcaatt
     2161 cctgaaagaa tagatgccgg attccccgca tgcgtcccag cctgataagc cggtccgagt
     2221 ggtgctactt tttccatgat atcaatccga ccaccgtaag caccaatcgg aagcccgcca
     2281 ccaataattt tacccatagc agtcaaatct ggaataacac ctaaatagtt ctgcgcgccg
     2341 ccgtacataa aacggaaagc cgtaataact tcatcataaa ttactaaaga atcattggca
     2401 tgtgcgagtt cattaacagc ttctaaaaaa ccatcttctg gcgcaaccat tccaaaattc
     2461 ccaacaatag gttctactaa aacagcagca acttgatcgc tccaaacagc taatgcctct
     2521 ttaaacgatg caaggtcatt aaaaggtaca gtaataactt cttctgcggt tgatttcgtt
     2581 accccagcgg agtctggaat gccaagcgta gaaggtccag aaccagcttc cacgagtact
     2641 aaatcaaagt ggccgtggta acacccagcg aatttaatga ttttatctct gcctgtataa
     2701 gcgcgagcga cacgaatcgt tgtcataaca gcttccgtcc cggaatttgt aaaacggacc
     2761 ttctcaagtg aaggaatggc ctcttttaac attttcgcaa aagtgatttc gtgtttagta
     2821 ggtgttccgt acaaaacacc attttgcgca gcttttgtaa ttgcttctgt aatatgagga
     2881 tgtgcatgtc cagtaatgat tggtccaaac gcagctaagt agtcaatata cttattccca
     2941 tccacatcat aaaaataagc gccgctagcc cgttccattg ttacaggaat tccgccgcca
     3001 acccctttat ttgacctaga tgggctatta accccgccaa ctatatgtaa aagtgcttca
     3061 tcatgcaatt tttttgacat tgaatgatcc atttcgtcat ctcctcaaaa ttttaatacc
     3121 tcttatattc tatgcgaaaa aataagatgc cgcaatcgaa aaaacaattt aattgccgtt
     3181 aaatgaaaaa aagcataaaa ttagtatata gctaaagaga ggaagtgtgg cgcaaaatga
     3241 acattttatt tacattagat gtcccagaac atttacagac tttgcaagca gagaaatttc
     3301 cagaggatac tttttattat gagagcaatg atcattttgc caatttagcg gagatagata
     3361 tcatcgtcac atacggatct aacattactg aagccaaaat taaacaagca agcaatttaa
     3421 aatttatcat ggttttttct gcgggagtag atagtttgcc gagggaaata attcaagaaa
     3481 aaaaaattaa agttgctaat gtacgcggaa tccacgctgt gccaatggga gaatacgcgc
     3541 tatctttcat gttatcacac gtaaaaaaag ccactttctt ctatcaaatg caaaaagaaa
     3601 aaaattgggc aagtgaagaa ccaataacag agttagctgg aaaaactttg gtagtagctg
     3661 gaactggagc cattggagca aaagtggccg agttcgctca agcatttgat atggaaatta
     3721 taggtgttaa tacaactgga catcctgtga agccctttag taaaacatat gccatgtccg
     3781 atatcgaaaa agtggctcca ttagcagatt tttttgttag tgttttacct catacagaca
     3841 aaacaacagc tatttattcc ttatcatttt tccggaaaat gaaagataat gcagttttta
     3901 tcaatatagg aagaggtagc gcagttgaat taaaggtttt agaacaagca tcaaaagagc
     3961 aattaataaa ccatttttat ttagatgttg tacctgaaga gccactttcc gaagacaatt
     4021 atttatggga agcaagtaac gttactatca cacctcatgt atctggacat tcggataaat
     4081 atttagaacg tagctttaag atttggtttg aaaatatcaa acatctaaaa gaaaatacca
     4141 aattacggaa tgaaattgat ttgaataaag gttattaagc tataaattct gccattctat
     4201 tgacagttaa gcgttatttc cggtattata aagataataa ttatttttgg aagggagtgc
     4261 atggcggtgt ctaatgcaac tctaaaagag gcagtagatg tcttaaagaa aacaggagta
     4321 agaatcactc ctcagcgtca tgctatactt gaattcttaa ttaactcaca tacacaccca
     4381 accgcggatg atatttatcg ggctttagaa ggaaacttcc ctaacatgag cgtagcaact
     4441 gtatataata atttacgcgt tttccgggat gctggtctaa ttaaagaatt atcctatggc
     4501 gatgcatcta gtcgatttga tttttctaca tctaatcatt accacgcaat ttgtaatgtg
     4561 tgtggaaaaa tagttgattt tcaatatcca ggtttagatg aagtagaaca tttc
//
LOCUS       DABQVC010000203         4597 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.203,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000203 DABQVC010000000
VERSION     DABQVC010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4597
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.203"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..224
                     /locus_tag="IBJ56_002502"
     CDS             <1..224
                     /locus_tag="IBJ56_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418745.1"
                     /translation="INNFKEKKDKYNPETAIRFDIVDKYYDETGNKITDLNKNDDVKI
                     ILTNDFQIQETNPAQIDPKYIQKIILLNK"
     gene            346..768
                     /locus_tag="IBJ56_002503"
     CDS             346..768
                     /locus_tag="IBJ56_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAM3418746.1"
                     /translation="MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDL
                     NWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKK
                     VRELLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF"
     gene            790..1641
                     /locus_tag="IBJ56_002504"
     CDS             790..1641
                     /locus_tag="IBJ56_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAM3418747.1"
                     /translation="MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKTGYRHID
                     TAQSYMNEEAVGRGIVASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYID
                     LLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEV
                     NPFQQQAANLAVLRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWL
                     VEQDIIVLAKSVKPERMAQNLAIFDFELTEADKGEIASLDQGESQFFSHADPEMVKWM
                     ASRKLNV"
     gene            complement(1682..3208)
                     /locus_tag="IBJ56_002505"
     CDS             complement(1682..3208)
                     /locus_tag="IBJ56_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3418748.1"
                     /translation="MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQA
                     FIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVS
                     MGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGY
                     ATDPDYVSKLVAIIERYNLDKYDVIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTE
                     NANKIGTLENYLGRNLEISWEAKTEKGLWYFIRENNKDIGWINSNALKISYHQKEDEN
                     VHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEVDKKITRGGYAWFRISEGEK
                     VIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYD
                     NEKLELVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTA
                     KLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDRQNSLGWIKAIDINS
                     "
     gene            3477..4505
                     /locus_tag="IBJ56_002506"
     CDS             3477..4505
                     /locus_tag="IBJ56_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HAM3418749.1"
                     /translation="MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIA
                     LADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKF
                     LAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPRKENGQ
                     IIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGT
                     GDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLAD
                     GQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLA
                     EKIIPYLS"
BASE COUNT         1501 a          838 c          907 g         1351 t
ORIGIN      
        1 taattaataa tttcaaagaa aaaaaggata agtataatcc ggaaaccgca atacgctttg
       61 acatcgtaga taaatattac gacgaaacgg gaaataaaat aaccgaccta aacaaaaacg
      121 atgacgtaaa aatcatttta actaacgact tccaaatcca agaaaccaat ccagcccaaa
      181 tagacccaaa atacatacaa aaaatcatcc tgctaaacaa ataaaactct ctcgcccaca
      241 gagagttttt tcttttctca aaaaaataaa ctcaaattcc ttgccttggt gtgaactcca
      301 gggtttataa ttctatatgt aaagaacgaa acgaggtgat ggaggatgaa tatcaaacaa
      361 gcggctgata tgtttggttt aacagtagat acgttgcgtt attatgagcg ggtcggtgtt
      421 attccgccag tccatcgtaa cgaaagtggt taccgggact ataaaacgag tgacttgaac
      481 tgggtttatc tcgtgaagaa tttacggaat gcgggattat cggtagaatc gttaattgag
      541 tttgcgacac ttgcgcagct cagagagacg caaaatgtcg aagcggcgca aaaacaagta
      601 ctggttgacc aactaaaaga attagacgaa aaattagccg agatgaagaa ggtcagagaa
      661 ctactcgtgt acaaaatcga ttcgtacgat agtcacattg cgcagtttaa agctggcgaa
      721 ttaaatgcag ataatgtaga aaaattatgg gaacgggaca aattttaaag ataagaggag
      781 gattttcaaa tgaaaacagt gaaattaaac aatggtgtag aagtacctat tttaggattt
      841 gggacatatc aaattacaga tgctgctgaa gcggaacaag cagtaaaaga tgcgattaaa
      901 acgggctatc gtcacattga tacggcgcaa agttatatga atgaagaagc tgtaggtcgc
      961 ggaattgtgg catccggcgt cgatcgcaaa gaactattca ttacgacaaa aatatgggtg
     1021 gaaaatgtaa gttataaagg tgttatgagc tcatttgacc ggtcgttaaa acgtttaggg
     1081 ttggattaca ttgatttgct gctaattcat caacctttca acgatgtata cggggcatgg
     1141 atagcgatgg aggaattaca agcatcagga aaaattagag caattggcgt atcgaatttt
     1201 agcccggatc gcgtaattga cctagctgcg ttcaatgaag taactccgca agtcaaccaa
     1261 attgaagtta atcctttcca acaacaggca gcgaatctag ctgttttaag aaaagaaggg
     1321 gttgcaatag aagcatgggc accgtttgcg gaagggaaaa atgatatttt taataaccca
     1381 gttttaacga aaattggtgc gaaatatgga aaatcggccg ctcaagtaat tttgcgttgg
     1441 ctagtagagc aagatattat cgtcttagct aaatctgtaa aaccagaaag aatggcgcaa
     1501 aatctggcta tatttgattt tgaattgacg gaggcagata agggagaaat tgccagccta
     1561 gatcaagggg aaagccagtt cttctcacat gcggatccag aaatggtgaa atggatggct
     1621 agtcgcaaac tgaatgtata aacgaaaaaa ggttctgcgt aaatgcagaa ccttttttta
     1681 tttaactatt gatgtcgata gctttaatcc atcctagtga attttgtctg tctttaagat
     1741 gcaaccaatc ttcaccaaga atggttgctg ttttatccac tgctaataat tttccataat
     1801 agaagcccac tgcttttggg ttagtacttg ttgattctac aggtttgtta taaagttttg
     1861 ctgttgggtc tttcacgtaa gcgacttgtt ttactggttc ttctttagcg ggagtataaa
     1921 atacatttaa gtctttttcg ctagcccatc caacaagttt tccatctact ttaaactgat
     1981 accaaagtgt atttccggct ttagctcgag tcactagttc tagtttttcg ttatcataat
     2041 ctgcaagtgg tgctaatttt tctgcgtttt ttgtgttgaa tggtgcagtc catacgttat
     2101 cagttgcaga tttacttact agagcatagc catcgtaaga agtttgttct gtgatgcgat
     2161 cataaaggcg atcattcaat ttatctgcgc gaacccagcc gattactttc tcgccttctg
     2221 aaattcggaa ccaagcatag ccgccgcgag tgattttttt atctacttca agggcttttc
     2281 tatcgtattt tgcgatagtt ccattatcga attgtttttc agggcttggt agacgatata
     2341 catgtgcgct taaatcatct acatatttgg ttaaatgaac attttcatct tctttttgat
     2401 gatagctgat ttttaaggca ttactattta tccaaccaat atctttgttg ttctcgcgaa
     2461 taaagtacca tagacctttt tctgttttag cttcccagga aatttctaag ttacgcccta
     2521 agtaattttc gagggtcccg attttattag cattttctgt attgtacggt gccgaccaaa
     2581 taacctcttg ttctttattt tcagctactg ttccaattgc tgctaaggat tgattagact
     2641 cgattttatc gtaaatgaca tcgtatttat ctaagttgta acgttcaata attgctacta
     2701 gtttagaaac gtaatctgga tcagtcgcat aaccaccgtc tttaatagct tgcagtgctt
     2761 tgcggtagtt cgtttcaccg acagcgtctt gatagcgcgc attttcagta atcaaagctg
     2821 tgtggtcttc aatggattct ttccaactag ggtaaacgcg gaaattagcg gtggttgagc
     2881 cggatgcttc cattgtcccc atggagacag acttaccttt atacgttcct ttaattccga
     2941 ataagttatt agagttctgg cttagaccac tttcacccca atttgattct aaaattgctt
     3001 gagcgagcgt tacacttgta agcaatttac catcgcgata tccatcctga gccgctggta
     3061 aaatttcatc aatgaaagct tgttgtgaag tagtcagatt aacttgagct gttctgctac
     3121 ctcctgtttc tgctccaaca tttatggaaa ctaccaaaaa tgccacaatt agcagaatta
     3181 tccctggttt tataaacttt ctatccaaat ttcaatgcac tcctttttat atatctgcaa
     3241 ctatattatc aaaaaatgcc aaaaaatttc tattacattt ctatgacgaa aaacaataac
     3301 tacgccaaac ctattgggac gtaaggacta aagctggaaa tgttaaatat gtaaaatttg
     3361 tgaaattttc ttcaacaaac ttttgtaccg aaaagacaag caatatgtga aataataaaa
     3421 cggtcatgct ataataatca gtatgtcagc gcattcattt ttggaggttt ttatatatgt
     3481 taaacgaaca acaaattact agattgctat atagattgca agatcctgtt ttagaggcaa
     3541 gcttagaaga aacagaaggt gttttagaag tgcaagtgct tgaagaaaca gcaaacatca
     3601 aaatcgcatt agctgatcca gcagtagaaa cggatcattt tgttcataat atagaagaac
     3661 ttctcaccca attcggcgta aatgaaataa atattgagct agaataccta cccgcagcag
     3721 ttattgaccg cattttccaa gcaagagata acatactctc agaagctagt gaaacgaaat
     3781 tcttagcaat agcgagtggt aaaggtggcg tcgggaaatc aactgtctct gcgaatcttg
     3841 caatcgcctt agcacaacaa ggcaaaaaag taggattatt agacgcggat atatatggat
     3901 tcagtattcc tgtactgcta ggaacaaccg aatccccccg caaagaaaat ggccaaatca
     3961 tcccagtcga aacacacggc attcaaatga tttctatgga tttttttgtg gaacaaggag
     4021 aaccagttat ctggcgcgga ccaatgctag ggaaaatgat taaaatgttt ttagaagaag
     4081 taagatgggg aaaactagac tatttactta tcgatttacc acctggaact ggagatgttg
     4141 cgctagatat ccatacgctt atcccgaaat gcaatgaact tattgttaca acaccacatt
     4201 atgcagccgc gtcagtcgca tctcgagcag gatatatggc agcaaaaaac aatcacaaaa
     4261 tcatcggtgt aatcgaaaat atgtcttatc ttactttagc tgatggacaa gtattaaaag
     4321 tattcggaca aggcggcggc gaaaaagttg ctgcagactt agaaacacaa cttttaattc
     4381 aactgccaat agaacaacca gaaccaaatg gaaatggcta tgtatcagcc cttttcaact
     4441 cttcaagcac ttcaggaaaa gcatataaaa ccctagcaga gaaaataatt ccatatttat
     4501 cataaaaact ttgtaaaaag tattgacgaa aggcaaaaat cttggtatat ttataaacgt
     4561 tgctgatgcg gacaaaacgc tttcgcaaca aaagaaa
//
LOCUS       DABQVC010000204         4541 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.204,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000204 DABQVC010000000
VERSION     DABQVC010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4541
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.204"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            48..656
                     /locus_tag="IBJ56_002507"
     CDS             48..656
                     /locus_tag="IBJ56_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate phosphodiesterase"
                     /protein_id="HAM3418750.1"
                     /translation="MEDLTTHLLCVTNQTEYGKFINWYEMEVKKVLQVYPNQHFIVKI
                     SFQQLYFRETMLLLENLQKDSRRITIELVGDSQISPNSKEHFSAEDSDAFLKGKLKML
                     RKWHYFISKHIESGAIEQTLIFTPYIDELKYSLTQKSKLLNNITELKFFLSFWKNWAE
                     LRFVDFLVLVDEKNEFVSYVLLPDELNVRCKMYENFGGMVSE"
     gene            649..1653
                     /locus_tag="IBJ56_002508"
     CDS             649..1653
                     /locus_tag="IBJ56_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HAM3418751.1"
                     /translation="MSKNVKKIVITILALIMTVGLASGFISPIKASAATNNFTVKVEY
                     VDADGAEIAPSDTLTDYHYVSTPKDIPGYKLREIPHNATGNITDTGIIVRYIYDKIID
                     VSYVDETGKDLLPVVEIIDSEAAILETIPDYTFVRKDISIDGLHIIFRYKKNISTIPE
                     FGKPNQVTVNYLDENNTSIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTE
                     SPQTINIIYQKKAPEQAPSMEPLPDTAVPENPPVEKAKIKKSKIETTEKRTISKAKIE
                     PKALKLTKVEQKKQETKDRLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRCRKE
                     "
     gene            complement(1696..2109)
                     /gene="psiE"
                     /locus_tag="IBJ56_002509"
     CDS             complement(1696..2109)
                     /gene="psiE"
                     /locus_tag="IBJ56_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HAM3418752.1"
                     /translation="MKRLEKISSIVPILLRITLNLALIMVGFTLVAFLIREAFTIFNN
                     IFFLDTDVSYYYMTQDILTFFLYFEFIALIVKYFESHFHFPLRYFIYIGITAIIRFII
                     VDHSSATSTLILSGAILLLVAALFLANTKMLKREG"
     gene            2249..3919
                     /locus_tag="IBJ56_002510"
     CDS             2249..3919
                     /locus_tag="IBJ56_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418753.1"
                     /translation="MDFGCAVLAAILELAFPVAVNHVIDTLLPGKDFGLIITAALALL
                     FFYILNTFMQYIVTYFGHMLGLNIETDMRRDLFSHLQKQPFGFYDNQKTGKLMSRMTT
                     DLFEIGEVAHHGPEDIFISIMSLFGAFFLMLNINVKLAISTFILVPILTVLIVYFNKR
                     MTKVTTGIFKDLGNFNAGVENAISGVRVVQAFANEPHEKGRFRVLNQAYRQSKLMFYK
                     VMGLSFSFNYFLMRLISLFALLFGAYFTINGEISYGEFVGFILLTNVFIRPIEKINNV
                     IESYPKGFAGFKRFLEVMDTEPAIQDEKDAKPAKAFRGDIAYNHVSFEYSDGKNVLNH
                     INLSIKAGETVAFVGPSGAGKTTICNLLPRFYDVSAGEITIDGENIKRFTLPSLRAQI
                     GVVQQDVFLFSGTVRENIAYGKLDASDEEIEHVVKLAHLSKVVEEMPDGLDTIIGERG
                     VKLSGGQKQRLAIARMFLKNPPILILDEATSALDTETEQVIQASLEELAEGRTTLIIA
                     HRLATIKHADRIIVVNETGIAETGTHNELLAQDNGAYKRLYDAQFNTI"
     gene            4213..>4541
                     /locus_tag="IBJ56_002511"
     CDS             4213..>4541
                     /locus_tag="IBJ56_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HAM3418754.1"
                     /translation="MSLFSLKRKNYFVPLEIQRQQWFKHFIVAFMSVFICYLTVYLLR
                     NNFKAAQTLLIEQNHFSTTELGMIGLAFSVMYGIGKTILGYAVDGRNAKKIMSFLLGI
                     SAIISII"
BASE COUNT         1571 a          733 c          883 g         1354 t
ORIGIN      
        1 atttagtcaa aaaagaaata gttgctatta aaaaaactaa aaatctcttg gaagatctaa
       61 ctacgcattt gttatgtgtt acaaatcaaa cagagtatgg aaaatttatc aattggtatg
      121 aaatggaagt taaaaaagtt ctacaagttt atcccaatca gcactttatt gttaaaattt
      181 cctttcaaca attatatttt cgggaaacaa tgctgttgct tgagaatttg cagaaagata
      241 gccggcgaat aacgattgaa ctagttgggg atagtcagat tagccctaat tcaaaggaac
      301 atttttccgc agaagacagt gacgcttttt tgaaagggaa gttgaaaatg ttgagaaagt
      361 ggcattattt tatttcaaag catattgaaa gtggtgccat cgaacaaacg ctgattttta
      421 cgccctatat tgatgaattg aaatatagtt taacgcaaaa gtcgaagctc ttaaacaata
      481 ttacagaatt aaagtttttt ctatcatttt ggaaaaactg ggccgaactt cgatttgttg
      541 attttttagt tttagtagat gaaaaaaacg aatttgtatc gtatgtactt ttaccagatg
      601 aattaaatgt acgttgcaaa atgtatgaga actttggagg aatggtcagt gagtaaaaat
      661 gtaaaaaaaa tagtgataac aatcttagca ttaataatga cagtaggatt ggcgagtggg
      721 tttatctcac ctataaaagc aagtgcagcc acaaataatt tcacggttaa agtggaatat
      781 gttgatgcag acggagccga gattgctcct tcagatacat taactgatta tcattatgta
      841 tctacaccaa aagatattcc tggctataaa ttaagagaaa tacctcataa tgcgacaggc
      901 aatatcacag atactgggat tatcgtgcgt tacatatatg ataaaataat cgatgtaagc
      961 tacgtagatg aaactggcaa agacttatta ccagtagtag aaatcatcga tagcgaagca
     1021 gctattttag agacaatacc tgactataca tttgtaagaa aagacattag catagatggc
     1081 ttgcatatca tttttcgcta taaaaagaat atttctacca ttccagagtt cgggaaaccg
     1141 aatcaagtca ctgtaaatta tctggatgaa aacaatactt caattgcccc gtcattatat
     1201 ttgagcggac ttttcaacga agcatacaat gttccgatga aaaaaattaa aggttatact
     1261 ttattaaaat acgattcgga aattcttggc gtttttaccg aatcaccaca aacaatcaac
     1321 atcatttatc aaaaaaaagc gcctgagcaa gcaccaagca tggaaccatt acctgataca
     1381 gctgttccag aaaatccgcc agtagaaaaa gcaaaaataa agaaatcaaa aatagaaacc
     1441 acagaaaagc gaactatatc aaaagcaaaa atcgaaccaa aagcattgaa attaaccaaa
     1501 gttgaacaaa aaaaacaaga gacgaaagat cgcttgccaa aaacaggtga tagctcggta
     1561 aatttattaa ttacgtgcct cggaattatt gccatatcgt gtggcgttta cttactcgta
     1621 caacaaagcc agaagcgttg tcgtaaagaa tagaaaataa aaacaagcaa tccgaaaata
     1681 ggattgcttg tttttttacc cttctcgttt aagcatcttt gtattagcta aaaacagtgc
     1741 agcgacgagt aaaagaatcg cgcctgaaag tattagcgtc gaagttgcgc tagagtggtc
     1801 gacaataata aatcgaataa tcgctgtgat accaatataa atgaaatagc gcagcgggaa
     1861 atgaaaatga gattcgaaat atttaacaat cagcgcaata aattcaaagt aaaggaaaaa
     1921 cgtcaaaata tcttgtgtca tataatagta agaaacgtct gtatctaaaa agaaaatatt
     1981 attgaaaatc gtaaatgcct ctctaattaa aaaagcaaca agggtaaaac cgaccataat
     2041 aagcgccaga tttagggtga ttcgtagcag gatgggaaca atagaagaaa ttttttctaa
     2101 tcgtttcatc agttgcctcc tttccaaaaa cgatatcgct tttttagtta ttttacacta
     2161 taatgggaac catgactatt tttaaggggg gattgttatt ctaaaacgct tttttagtta
     2221 ttataagccg tatcgaacac tttttatcat tgactttggt tgcgccgtct tagcagctat
     2281 tttggagctg gcttttccag tcgcggttaa ccacgtgatt gatacattac ttccaggaaa
     2341 agattttggg ctgattatta ctgcggcact tgccttatta ttcttctaca tacttaacac
     2401 atttatgcag tacattgtca cttattttgg acatatgctt ggtcttaaca tagaaacaga
     2461 tatgcgtaga gatttattca gtcatttgca aaaacaacca tttggctttt acgacaatca
     2521 gaaaaccgga aaattgatgt cacgaatgac gactgactta tttgaaattg gtgaagtagc
     2581 gcatcatggt ccagaagata tttttatttc gattatgtcc cttttcggtg cttttttctt
     2641 aatgttgaat atcaatgtga aattagcgat ttcgacgttt attctagtac cgattttgac
     2701 tgtattaatt gtttacttca acaaacgaat gaccaaagta acaaccggga tttttaaaga
     2761 tttagggaat tttaatgctg gagtggaaaa tgcaattagc ggggtgcgtg tcgtgcaagc
     2821 attcgccaac gaaccacatg aaaaagggcg ttttagagtg ctcaaccaag cgtatcgtca
     2881 gtcaaaatta atgttctaca aagtgatggg cttgagtttt tcgtttaact attttctgat
     2941 gcgattgatt agtttatttg cccttttatt cggagcttat tttacgatta atggcgaaat
     3001 atcatacggg gaatttgtcg gatttatctt gctaacaaac gtgttcattc gaccaatcga
     3061 gaaaatcaac aacgtaatcg aaagctatcc aaaaggcttt gcagggttta agcgattcct
     3121 agaagtcatg gatacagaac cagcaatcca agacgaaaaa gacgcaaaac cagccaaggc
     3181 gttccgcggt gacattgctt acaaccatgt atcttttgaa tatagcgatg ggaaaaatgt
     3241 gctaaatcat ataaatcttt ctatcaaagc cggcgaaacc gttgcctttg ttgggccaag
     3301 tggagctggg aaaacgacga tttgtaattt gttaccacgt ttttacgatg tgtcagctgg
     3361 agagattaca attgacggtg aaaatattaa acgatttact ttaccgtctt tacgagcaca
     3421 aatcggtgtc gtgcaacaag atgtcttttt gttttccggt acagttcgcg aaaatattgc
     3481 gtacggaaaa ttagacgcta gcgatgaaga aatcgagcat gtcgtgaaac ttgcccatct
     3541 ttccaaggta gtagaagaaa tgccagatgg tcttgacacc atcattggtg agcgcggagt
     3601 caaactttct gggggacaaa aacaacggtt agctattgcg cgaatgtttt tgaagaaccc
     3661 accgatttta attttagatg aagcgacgtc agcacttgat acggaaacag agcaagtgat
     3721 tcaagcctcg ctagaagagt tagcggaagg aagaacgact ttaattatcg cgcacagact
     3781 cgcaacgatt aagcatgccg atcgaattat cgttgtaaat gaaacgggca tcgcagaaac
     3841 tgggacgcat aatgagcttt tagcgcaaga taatggtgcc tataagcgat tatatgatgc
     3901 tcagtttaat acgatttaac gagtaaaaac tttcgggttt taggaaatat tttactaaaa
     3961 ggaaagcagg aattatttgg gaaccccaag ataattcctg cttttttatt ttctgcatga
     4021 taacaagtgt taatgacgga aatagaattt ctgttttata tttttagcag cgcaaaaggg
     4081 gaaataaagc atttggacag cagaggtgat tgctttagaa aaattgatag actttatatg
     4141 gaaacgtttg cgtaataatg ctcatcgcat tctaaatttg gaatgaaaat tacacttgaa
     4201 aggaaattta taatgtcatt attcagttta aaaagaaaga actattttgt tccactagaa
     4261 attcaaaggc aacaatggtt caaacacttt atcgttgcat ttatgtctgt atttatttgt
     4321 tatctaacgg tctatcttct aaggaataac tttaaagcag ctcagacatt gttaattgag
     4381 cagaaccatt tcagcaccac agaactagga atgattggtt tagctttttc tgttatgtac
     4441 ggaattggaa aaacgatttt agggtatgcc gtggatggaa gaaatgctaa aaaaataatg
     4501 agttttttat tagggatttc cgccattata tcaattatta t
//
LOCUS       DABQVC010000205         4538 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.205,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000205 DABQVC010000000
VERSION     DABQVC010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4538
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.205"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            154..615
                     /locus_tag="IBJ56_002512"
     CDS             154..615
                     /locus_tag="IBJ56_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418755.1"
                     /translation="MNWTIWDKSQPVPLTLLLDADPSEKQIATYFNKSHVLQLMQADT
                     IIGVVCLFPLNKNQLEIMNIVVSSEYRNQGIGKKLLEKAFDYATHKHFSKIIVKTGNS
                     SIDQLAFYQKNGFRMQHIIPNYFTENYPNQTIIENGIACLDQIILLKEIKS"
     gene            complement(650..2002)
                     /locus_tag="IBJ56_002513"
     CDS             complement(650..2002)
                     /locus_tag="IBJ56_002513"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HAM3418756.1"
                     /translation="MGKYFGTDGVRGVANSELTPELAFRLGRMGGYVLTRHVGEHPRV
                     LVARDTRISGEMLESALIAGLVSVGIEVMRLGVISTPGVAYLTKAQGASASVMISASH
                     NPVDDNGIKFFGSDGFKLSDDQEEEIEQLLDTAEDTLPRPSGEGLGTVSDYFEGKQKY
                     IQYLKQTIENDFNGYHIALDCANGATSGLATHLFADLDADISSMGASPNGLNINDGVG
                     STHPEALAAFVLDKKADVGLAFDGDGDRVIAIDEIGQIVDGDKIMFICAKYLREQGLL
                     NNNTIVSTVMSNLGFYKGLKELEIEDVQTAVGDRYVVEAMREGNYNLGGEQSGHIIFL
                     DHNTTGDGLLSGIQLINVMKATGKKLSELAAEMKTFPQKLENIRVSDKNHVTDNPKVS
                     KVIGEVEAEMAGNGRVLVRPSGTEPLVRVMVEAATKEETDEYCERISAVVRSEMALND
                     "
     gene            complement(2252..3610)
                     /locus_tag="IBJ56_002514"
     CDS             complement(2252..3610)
                     /locus_tag="IBJ56_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbbR-like domain-containing protein"
                     /protein_id="HAM3418757.1"
                     /translation="MDRILNNKWSIRIVALLLAAILFTSVNANNNNATTFSTTSSSDS
                     EVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIG
                     TQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPII
                     DPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQE
                     VEVTVPVEKVGKSVPVKIKQEGTPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIP
                     IDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANNNQTTSDSNNQDTDT
                     TDKNTDDSGDNDTKISKSFSNMQVYMSGLKNTFDAQMITPANGKVSVTITGEKKTVDG
                     IAAKDLSVIANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSK
                     ST"
     gene            complement(3610..4431)
                     /locus_tag="IBJ56_002515"
     CDS             complement(3610..4431)
                     /locus_tag="IBJ56_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase"
                     /protein_id="HAM3418758.1"
                     /translation="MDFSNMSILHYLANIVDILVVWFVIYKVIMLIRGTKAVQLLKGI
                     FIIIAVKLLSGFFGLQTVEWITDQMLTWGFLAIIIIFQPELRRALETLGRGNIFTRYG
                     SRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLI
                     NIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSIT
                     IVVSEETGGISLTKGGELFRDVSEEELHKILLKELVTVTAKKPSIFSKWKGGKSE"
BASE COUNT         1307 a          957 c          742 g         1532 t
ORIGIN      
        1 ataaccaata accgcactaa taaaactgta tagttgcgta ataccaagag cgattaacaa
       61 actaccgcat attcctctcc atttactagg caattcgccc acttccttcc tatttatgcc
      121 ttgccatgtt accctaagag tgaggtgata aaaatgaact ggaccatctg ggacaaaagc
      181 caaccagtcc cactcactct tttgttagat gccgatccta gtgaaaaaca aattgcgaca
      241 tacttcaaca aatctcatgt gttgcaatta atgcaagctg atacaatcat cggcgttgtt
      301 tgtttatttc cactaaataa gaaccaactc gaaataatga atattgttgt ttcttcagaa
      361 tacagaaacc aaggtattgg caaaaaatta ctcgaaaaag cttttgatta tgcaactcat
      421 aaacactttt caaaaattat cgttaaaact ggaaattcta gtattgacca acttgccttt
      481 taccaaaaaa atggttttcg gatgcagcat attatcccaa attattttac tgaaaattat
      541 cctaatcaaa caattatcga aaacggcatt gcttgcttag atcaaatcat tctattaaaa
      601 gaaataaaat cctgatgaag tttatcatca ggattttttg tttgttgttt taatcgttaa
      661 gtgccatttc tgaacgaaca accgctgaaa tacgttcaca atattcgtct gtttcttctt
      721 tcgtagcagc ttctaccatc actcttacta atggttctgt acctgatggg cgaacaagaa
      781 ctcgaccatt accagccatt tcagcttcta cttcaccgat tactttactt actttcggat
      841 tatctgttac atggttttta tcacttacac ggatgttttc tagtttttgc gggaatgttt
      901 tcatttcagc cgcaagctca gataattttt tcccagttgc tttcatcacg ttgattaatt
      961 ggattcctga aagaagtcca tcaccagttg tattatgatc taagaaaata atatgaccag
     1021 attgttctcc gccaagatta taattacctt cacgcatagc ttctactaca taacggtcac
     1081 ccactgcagt ttgtacatct tcaatctcaa gctctttcaa acctttatag aagcctagat
     1141 tactcataac tgttgataca attgtgttgt tatttaataa gccttgttca cgtaaatatt
     1201 tcgcgcagat aaacataatt ttatctccat cgacaatttg accaatttcg tctattgcaa
     1261 taacacggtc gccatcgcca tcaaaagcta aaccaacatc tgctttttta tctaaaacaa
     1321 aggcagctaa tgcttctgga tgtgtagatc cgacgccatc attgatattt aaaccgtttg
     1381 gagacgctcc catcgaacta atatccgcat ctaaatctgc aaataaatgc gttgcaagac
     1441 ctgaagttgc accattcgca caatcaagtg caatgtgata tccattaaag tcattttcga
     1501 ttgtttgttt caagtattga atatattttt gtttgccttc aaaataatcg ctcactgtcc
     1561 caagaccttc tccacttggt cgaggtagcg tatcttctgc tgtatcaaga agctgttcaa
     1621 tttcttcttc ctgatcatct gacaatttaa agccgtcaga accaaagaat ttaataccgt
     1681 tatcatccac tggattatgg ctggcggaga tcattacact agcagaagcg ccttgtgctt
     1741 ttgttaaata agctacacct ggtgtggaga taactcctag acgcattact tcaatcccta
     1801 cagaaacaag tcctgcgatt aaagcggatt caagcatttc tccagatata cgtgtatcac
     1861 gagctacaag aacacgtgga tgttccccta cgtgacgggt taaaacatac ccacccattc
     1921 tacctaatct gaatgcaagt tctggtgtta attcagagtt tgcaacacct ctaactccat
     1981 ccgtaccaaa atatttaccc atttcattac tctccttcta agtcattcat tatctaaatg
     2041 atttttgttt gtcatttcat cattactttg tcaaatgctg gttctatctt tgctaatctc
     2101 aaccatacat ttgttattat acctttttta agagaaaatt tcatccctct acaataaaac
     2161 gttggtattg cttgcttttc cactattcta tgtataaaaa gttctttgcc aaaaaggagg
     2221 agtatgagac tagcgcccca cactccttat gttatgtgct tttggaaggt acttcaatag
     2281 atgcctcttt atccgtaata atgaaatcag cttgtctagg attaataaca taggcaacat
     2341 tatccggtaa gccattcaat tctagtggaa tactgtaact tcctgctttg cttttactca
     2401 aattggcaat cacactcaag tctttcgccg ctattccgtc tactgttttc ttctctccag
     2461 ttatcgtcac agatactttt ccattggcag gagttatcat ttgtgcatcg aaagtatttt
     2521 tcaatccact catgtagact tgcatattag aaaatgactt agaaattttt gtatcgttat
     2581 ctcctgaatc atcggtgttt ttatccgttg tatctgtgtc ttggttatta ctatctgaag
     2641 ttgtttgatt gttatttgct tcagactttt ttacggtctt aatcttcacc tctatcgtcg
     2701 tcggttggac tgatttggct ccagttggaa ccgggacagt cacttctttg acggtatctg
     2761 ctttgatttt agaaacatca attggaattt caatttcttt gattttttca aggaccgcat
     2821 cgtcaccaac tacaactact tctgacttat ctggtgtcat gctggaaatt tcaatatcac
     2881 tttctggcgt gccttcttgc ttaattttca ctggaactga cttgccgact ttttcaactg
     2941 gcacggtcac ttccacttct tgcggattta cttcgacatc tagcttgttc aaattgctat
     3001 caaaaacaga gacggtagcc ttatcggtaa attcggattt atgtttgcca tcactttcga
     3061 gtgttgcttt tacataagca atttgttcga tagtatcttt tgcaccagta atagagactt
     3121 ttttaggatc aatgatgggc gttccagctt gataaccatc tgcaacgaca gatttgctca
     3181 attctacgtc aacagagaat tttttcgtta ctttttcttg tacattgacg ttgactgttg
     3241 ctggattcac ttttactttt aggcggtcag atacatcttt cacttgtagt tttacttctt
     3301 gggtcccaat ggaagcattt ttcaaatctg cataaacggt aaagtcttgt tgagctttgg
     3361 cagactgaac gatgctacga gggcctgaaa gcgtgactgt aacggtttct ggaatacccg
     3421 aaatatataa attcgtttta tcataatata ctttgactgg gacattctcg atgacttctg
     3481 aatcactaga agaagtcgtt gaaaaagtcg tggcgttatt attatttgca ttaactgatg
     3541 taaaaaggat ggctgcgagt agtaaggcta caatccgaat cgaccatttg ttatttaaaa
     3601 ttcgatccat cattcgcttt tgcctccttt ccatttagaa aagatagaag gtttctttgc
     3661 agttactgtg actagttctt taagaagaat tttatgtaac tcttcttctg acacatcacg
     3721 gaaaagttct ccacctttag ttagggaaat tccgccagtc tcttcagaaa ctacaatcgt
     3781 aatactatct gtcacttcac taatcccaag tgcagcccgg tgacgcgttc caagttcttt
     3841 ggataagaac gggctatctg aaagtggcaa gtaacttgct gccgatgcaa tttcgtttcc
     3901 tttaataata actgctccat catgaagcgg tgtattcgga ataaaaatat taattaataa
     3961 ttgagaagaa atttttgcat ttaacggaat ccctgtttca atataatcgt ccatgcctgt
     4021 atcgcgcgcc actgaaatca gcgccccaat tcgacgtttt gccatatact gggtagactt
     4081 ttcgatagac tcgattaaat gatgctgttc acgctctatt cttgatccat aacgagtaaa
     4141 aatattgcct cgtccaagcg tttctaaagc acggcgtaat tccggttgga agataattat
     4201 aattgcaagg aatccccaag taagcatctg atccgtaatc cattctactg tttggagacc
     4261 aaaaaatccg cttaatagtt tgactgcaat gataataaaa atgcctttta ataattgtac
     4321 tgcttttgta cctcggatta acatgatcac tttataaatt acaaaccata cgacaagaat
     4381 atctacaata tttgctagat aatgcaatat cgacatattg gaaaaatcca tcacttcacc
     4441 tccgtgcctc ttgaaaacca tttatgatca catggttcac tttctttatt atagcataag
     4501 agtgcaggtg gaaaaagcaa tcgtcccgcc aaaaattg
//
LOCUS       DABQVC010000206         4533 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.206,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000206 DABQVC010000000
VERSION     DABQVC010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4533
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.206"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1803
                     /locus_tag="IBJ56_002516"
     CDS             <1..1803
                     /locus_tag="IBJ56_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418759.1"
                     /translation="DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT
                     DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL
                     FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKKPAR
                     NFSKTLSVPNNITSIDGTLVTPKTISNNGTYDAPNVNWSSPSYLPEVRYTFKQDVAVG
                     STTSSYTGIIIQPLNEPVDYNVTFNIDGNTSEVKTVTEEDLIPEPTNPTKQGYTFDGW
                     YDAETGGTKWDFTTGQMPANDLMLYAHFSVNSYQVNFDIDGAVMNEAVVYDTLLNEPT
                     APTKQGYTFDGWYDAETGGNKWDFKTMKMPANDVTLYAHFTVSSYQVNFDIDGAVTNE
                     AIVYDALLNEPATPTKQGYTFDGWYDAETGGNKWDFKTMKMPANDVTLYAHFTINNYQ
                     ANFDIDGAVTNETITYDTLLNEPTAPTKQGFLFDGWYDAEVGGTKWDFNTMKMPANDI
                     NLYAHFSKETPLIPSPSDESDSKPTNGSITINEPSATSMPAQNNNITVTAGENTPELT
                     TAKLPKTGDNNPWQTLFAGILLSSSAFYIWRKKA"
     gene            complement(1851..4454)
                     /gene="ppsA"
                     /locus_tag="IBJ56_002517"
     CDS             complement(1851..4454)
                     /gene="ppsA"
                     /locus_tag="IBJ56_002517"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HAM3418760.1"
                     /translation="MKPYVLKFQEIRPHSEALVGGKGMNLGACSNIEGVHVPAGFCLT
                     TEAYKRTLAENNEFTQLLQRLSSLKTSDMDAIREISETIRTLIQHTQIPSEIASYMDA
                     TLLDVGGYEMPFAVRSSATAEDLPHASFAGQHDTYLNIIGKDALLQHISMCWASLFTE
                     RAIIYRIQNQFDHRKVQLAVVIQQMISPEASGILFTADPITSNRKSLSIDASFGLGEA
                     LVSGLVSADSYTVRENTITNKIIATKKLAIYSLKEGGTETRILEKSQQTKQTLTDQQI
                     IQLAKLGRKIEAYFGKPQDIEWCLAEGAFYIVQSRPITTLYPIPEVNEPGNRVYISVA
                     HQQMMTDAMKPLGLSFYLMTTPATMYTAGGRLFVDITQSLSAKVSRDMMVNSLGQSDP
                     LIKDALLTVINKKGFLPPLPTEENPSHATVSGKPPVRSIPDSSSVFELVRNSENSIKH
                     LKQSIETKSGSDLFDFIVEDLEELKRVLFNPTSIDAIMAGMDASAWLNEHIYQWLGEK
                     NVADKLSESAPNNITSQMGLELLDVADVIRPYPAVRAYLEQTKNPDFMNELATLEGGA
                     ETKKALEDYLQKYGMRCAGEIDLTKTRWIENPLTLIPLILSNIKNFDSSASMHKFAQG
                     EKEAFHKEQEILRRLQELPDGEQKAMETKEKIDILRHFIGYREYPKYGMINRYFIYKL
                     ALLRAGEQLVKDGILQEHEDIYFLYFEELREVVRTGQVDYELINARKRDFATFEKLTP
                     PRILTSDGEMINGEYKRENLPKDAILGLPVSSGTVEGRARVILEMEKADLEDGDILVT
                     AYTDPSWTPAFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVENATTIIKDGQQIRI
                     NGTEGYIEILD"
BASE COUNT         1393 a          879 c          914 g         1347 t
ORIGIN      
        1 gatataagtc cgctagctag tttgacaagt ttacattatt ttacagcata tgtgaatcaa
       61 attactgata ttactcctgt agctaatatg acaaggctaa attctttaaa gataggaaat
      121 aataaaatta ctgatttaag cccattagct aatctatcac aattaacttg gctagaaatc
      181 ggtaccaatc aaattagcga tattaatgcg gttaaagatt taactaaatt aaaaatgttg
      241 aatgttggta gtaaccaaat tagtgatata tctgttctaa ataatctttc ccaattgaat
      301 tctttattct tgaataataa tcaacttggg aatgaagata tggaagtgat tggtggatta
      361 actaatttaa ctactttatt tttatcgcaa aatcatatta cagacataag accattagca
      421 agtttaagta aaatggattc cgctgacttt gcaaatcagg tgataaaaaa accagcacgt
      481 aatttttcga agacattatc tgttccgaat aatataacta gcatagatgg aacactagtt
      541 actcctaaga caattagcaa taatggaacc tacgacgcgc caaacgtgaa ttggtcttcg
      601 ccgagctatc ttccagaagt aagatataca ttcaagcaag atgtggcggt gggatcaacc
      661 acaagtagtt atactggtat cataattcaa ccgctaaatg agccagtaga ctacaatgtc
      721 acatttaata tagacggcaa tacaagcgaa gtaaaaactg taacagaaga agatctaatt
      781 ccagaaccta cgaacccgac caaacaaggt tatacatttg atggttggta cgacgccgaa
      841 acaggtggaa caaaatggga ctttacaact gggcaaatgc ctgcaaatga tctcatgcta
      901 tatgcccatt tttccgtaaa tagttatcaa gtgaattttg atatagatgg cgcagtaatg
      961 aatgaagcgg tagtatacga tactttgctc aatgaaccga ccgctccaac caaacaaggt
     1021 tatacattcg atggttggta tgacgcagaa acaggcggta ataagtggga tttcaaaacg
     1081 atgaaaatgc ccgcaaatga tgttacttta tatgcacatt ttactgtcag cagttaccaa
     1141 gtgaattttg atatagatgg tgcggtaacg aatgaagcaa tagtatacga tgccttactc
     1201 aatgaaccgg cgactccaac taaacaaggt tatacatttg atggctggta tgacgcagaa
     1261 acaggcggta ataagtggga tttcaaaaca atgaaaatgc ccgcaaatga tgtcacttta
     1321 tatgcgcatt ttaccatcaa caactatcaa gctaattttg atatagatgg tgcggtaacg
     1381 aatgaaacga taacatatga taccttactt aatgaaccga ctgctccaac caaacaaggt
     1441 ttccttttcg atgggtggta tgacgcagaa gtaggcggaa caaaatggga ttttaacacg
     1501 atgaaaatgc ctgcgaacga tattaatttg tacgcacatt tcagtaaaga aacgccactt
     1561 attcctagcc catctgacga atcagactcg aaacctacca atggatcaat cactataaat
     1621 gaaccgagtg caactagtat gccagcccaa aataataaca tcacagtaac agcaggggaa
     1681 aatactccag aactaacaac agctaaactt ccgaaaactg gagataataa cccgtggcaa
     1741 acactattcg ccgggatatt actttcatca tccgcgtttt atatttggag aaaaaaagca
     1801 taattaaaaa acccagtatt tcctaaaatg gagattactg ggtttttggt ttaatcaaga
     1861 atctcaatat agccttctgt cccattgatg cgaatttgct ggccatcttt tataatggta
     1921 gttgcatttt cgacacccac gacagcggga aggccgtatt cgcgcgcaat cactgctccg
     1981 tgcgtcataa gcccgccaac ctcggtcaca agccctttaa tagatacaaa tgcgggagtc
     2041 caactagggt cagtataagc cgtaacaaga atatcgccat cttctaaatc cgctttttcc
     2101 atttctaaaa tgacgcgagc gcgaccttca actgtccctg atgaaactgg aagtccaaga
     2161 atggcgtctt tagggagatt ttcgcgtttg tattcgccgt taatcatttc tccatcagaa
     2221 gtaaggatgc gtggtggcgt taatttttca aaagtggcga aatcacgttt tcgagcgtta
     2281 ataagttcgt aatcaacttg accagtacgc acgacttcgc gcagttcctc aaagtaaaga
     2341 aaataaatat cttcatgctc ttgcagaatg ccatctttta caagttgttc gccagctcga
     2401 agtaaagcca gtttgtaaat aaagtagcga ttaatcatcc cgtatttagg atactcacga
     2461 tagccgatga aatgacgtaa aatatcgatt ttttcttttg tttccatcgc tttttgttcc
     2521 ccgtccggaa gctcttgcaa acgtcttagg atttcttgtt ctttatggaa agcttctttt
     2581 tctccctgag caaatttgtg catactcgcg ctggagtcga aatttttgat gttacttaaa
     2641 atcagcggaa taagcgttag cgggttttca atccaacgag ttttggttaa gtcaatttca
     2701 cccgcacagc gcatcccgta tttttgaagg taatcttcta gcgctttttt ggtttctgca
     2761 ccaccttcta aagtagctag ttcattcatg aaatcagggt ttttcgtttg ttctaaatag
     2821 gctctgacag cagggtaggg gcgaatgacg tcagctacat ctaataattc aagtcccatt
     2881 tgtgaagtaa tattgtttgg ggctgattct gacagtttat cggcgacatt tttttctccg
     2941 agccactggt agatatgttc atttaaccaa gctgaagcgt ccatacctgc cataatggca
     3001 tcaatgctag taggattaaa taaaactcgc tttaattctt ccaaatcctc tacgataaaa
     3061 tcaaacaaat cagatccgct tttcgtttcg atggattgct tcaagtgttt tatggagttt
     3121 tcgctgtttc gaactaattc aaaaacgcta gatgaatcag gaatgctacg tacgggtggt
     3181 tttccagaaa cggtcgcatg gcttggattt tcctcggttg gtagtggagg caggaatcct
     3241 tttttgttaa ttacagtgag caaggcatct ttaataagtg ggtctgattg accgagtgaa
     3301 ttgaccatca tatcgcgaga aactttggct gacaggctct gagtaatatc gacaaacaac
     3361 cgccctcctg ctgtatacat cgtggcggga gtcgtcatta aataaaagga aagtcccagt
     3421 ggtttcatcg cgtcagtcat catttgctga tgtgcaacag aaatataaac acgattgccg
     3481 ggttcgttta cttctggaat tggatataaa gtcgtgatag gtcgactctg aacaatgtaa
     3541 aaagcacctt ccgctaaaca ccattcaata tcttgtggtt tcccaaaata ggcttcgatt
     3601 tttctaccaa gtttcgcaag ttgtattatt tgttggtcag ttaatgtttg cttggtttgt
     3661 tgtgattttt caagtatgcg agtctccgtt ccaccttctt ttaaactgta aatggcgagt
     3721 tttttagtag cgattatttt gttcgtaata gtattttctc ggactgtgta tgagtcagca
     3781 gaaactaaac cggaaacaag cgcttcacct agcccgaaac tggcatcgat agagagggat
     3841 ttgcgattcg atgtaattgg atcagccgta aataggattc cggatgcttc gggggaaatc
     3901 atttgttgaa taacgacggc aagttggact ttacgatgat cgaactgatt ttgaatgcga
     3961 taaataatcg cgcgttcggt aaacaaagaa gcccagcaca tactgatatg ttgtaataag
     4021 gcatctttac caataatatt taaatacgta tcatgttgcc cagcgaagga agcgtgggga
     4081 aggtcttcgg cagtggcgct agaacgtacg gcgaaaggca tctcataccc acccacatct
     4141 aaaagcgtag catccatata actcgctatt tcagagggga tttgtgtatg ttgaataagc
     4201 gttcgaatcg tttcgctgat ttctctaata gcatccatgt cacttgtttt tagggaagaa
     4261 aggcgttgga gcagttgcgt aaattcattg ttttccgcta aggttcgctt gtaagcttct
     4321 gttgtcaggc aaaaacctgc gggaacatgt actccttcga tattagagca agcacctaaa
     4381 ttcattcctt taccaccgac aagtgcttct gaatgcggcc gtatttcttg aaacttgagt
     4441 acatatggtt tcatatattt atcccccaat ttttttcgaa aaataatact tgactgtaaa
     4501 gaacctcttg ttgtataatt aaagtaggga ttg
//
LOCUS       DABQVC010000207         4437 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.207,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000207 DABQVC010000000
VERSION     DABQVC010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4437
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.207"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1345
                     /locus_tag="IBJ56_002518"
     CDS             <1..1345
                     /locus_tag="IBJ56_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HAM3418761.1"
                     /translation="DFASTKIKVFDLDDNHITDLSSLTNNKMPNLQRLYVRSQSFYVE
                     TPVVTSSKYEFSLQPSVFGITKPVKITATNPKATIDPITSKITYSAEVMAKRPKYSSN
                     RVSGVSGVTYSWDEDIPFNGSNNLVEYNGTFYKPLTYVEPPQVVSYNSGLTYELGTPL
                     TEQQFLNDLNVITDQPTTITTNFDKVLKDVNSVGFYPVTIKASNIEGNTEFTTSVLIK
                     YKPPVITADAEYTYLVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNTAGDYVVT
                     LSSPKSGYYEQDAIPVTVIVHVKELLELQIPDEFRMDIDANADSVPISDKKQTLTCYG
                     SSGKAELEVIDRRTVRQGWTITGAMTPFTNSGGDILQTSLKYQSKSPSSSPIYLNTTN
                     QPIEKKQSAVTDPKYDSTIVNLEDSLSMEIEPNDALVNDSYESKITWTLEDAPRP"
     gene            1385..1681
                     /locus_tag="IBJ56_002519"
     CDS             1385..1681
                     /locus_tag="IBJ56_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418762.1"
                     /translation="MKKMGFILICCLFVCASPFYVKANTDKATSKAGVIFTHDPRKPR
                     TGTDDRSGTFPTKVPPKRLPKTGDTTDFYLVLLGFGFILIAKKGYFKEVREEIR"
     gene            1725..2567
                     /locus_tag="IBJ56_002520"
     CDS             1725..2567
                     /locus_tag="IBJ56_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxL domain-containing protein"
                     /protein_id="HAM3418763.1"
                     /translation="MTSRTVKVTTASLLALGLIVAPVLSGDFASAATSVTKDSKGIVK
                     FDKSTTPDPDPVNPDPVDPDPVIPDPTDPPVGTDGLWILAVSDWDFGTHNVSSLSSGA
                     LNVHAADDTISTYVDANGNGQQDLPGEVSVTKKVTPYAQISDVRGTNTGWTLSVTGSA
                     FKDSSTPAKMIPGAELTIPKSTVSSATSTAQAPTGYDSVTISMTGGAAVPVMAAKDMQ
                     TATPTNFNDDQGMGTWTDSFGSQAVSATDTSKPKLSIPKNVVVADGTYQSTLTWTLSD
                     TPAV"
     gene            2643..3674
                     /locus_tag="IBJ56_002521"
     CDS             2643..3674
                     /locus_tag="IBJ56_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF916 and DUF3324 domain-containing protein"
                     /protein_id="HAM3418764.1"
                     /translation="MKKICAIIFACVLAILCFPGQQAYATENSSFSVKAILPDNQASS
                     VTYFDLQMKPKQKQSLNVEITNQSKEEITVNCVANTAVTNEMGYVDYSIPNTKPDKTL
                     KYPFADMVKESVSEVTLKPNETKIWTAAIQMPAENYDGIILGGLHFQEKKEEDKEKDS
                     SENDVQIKNEYAYVIGVKLTEKTTVVKPELELNQIKPATRNYRNVVEMNLQNTKATLV
                     GGLAVDAKIYKKGSEKVLHESKRTDLSMAPNSNFNYSVDWENQELKPGKYKVHLVAKN
                     KEDKWEWTKEFTISSDQAKKANKVALGLEKDYTWMYIVGGVLLFILLIIATYFVGKRA
                     AKKKQENEK"
     gene            complement(3731..4366)
                     /locus_tag="IBJ56_002522"
     CDS             complement(3731..4366)
                     /locus_tag="IBJ56_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HAM3418765.1"
                     /translation="MLIKNLCIPKINLTTVPGDATLQEAIHLLEESGYRCVPVLDEKG
                     EKFLGNIYKMHIYKHAANGGSLSDPVMSLIKNATKHICVNASFFEVFFTIKELPYIAV
                     LNEQGNFYGILTHGKLLGLLQDGWNVKTTSYVLTIATGEVQGALTKITKIIDRYSSIS
                     SLITLDNQTEDFIRRVLVSLPVGVTEDKKNEIVSHLERKGLRVVETEKIEK"
BASE COUNT         1508 a          825 c          867 g         1237 t
ORIGIN      
        1 tgattttgcc agtactaaaa taaaggtgtt tgatttggat gataatcata ttactgattt
       61 atctagtctt acaaataaca aaatgcctaa tttacagcga ttatatgtta ggagccaaag
      121 tttctatgtg gaaacgccgg tagttacttc tagtaagtat gaattttctt tacaaccatc
      181 tgtttttgga ataaccaagc cggttaaaat aactgctact aatcccaaag caactattga
      241 tcctattact tctaaaatta catattcagc agaagtaatg gccaaaagac cgaagtatag
      301 ctctaatcgg gtttctgggg tttcaggagt tacctattcg tgggacgagg acattccgtt
      361 taatggtagc aataatctag ttgaatacaa tggtacgttt tacaagccat taacttatgt
      421 tgaaccgccc caagttgtgt cttacaattc aggccttact tatgagctag gtacaccact
      481 tacggaacaa caatttctaa acgatctcaa tgtgataaca gatcaaccaa caacgattac
      541 tacaaatttt gataaggtgc taaaagatgt gaattctgta ggcttttacc ctgtcactat
      601 caaagcttct aacatagaag gaaatacgga gttcactact tcggtactga ttaagtataa
      661 gccaccagtt ataaccgcag atgcagaata cacctattta gtaggagata aagtgaatgc
      721 tactcaattt cgagcagatg taaatgcaac tttgacaggt gaaggaacac taagagatga
      781 ctttatatat aaagtaagac ttaatacggc gggagattat gttgtaactc tttcttcacc
      841 taaaagtggc tactatgagc aagatgcaat acctgttaca gtcattgttc acgtaaaaga
      901 acttttggaa ttgcaaatcc cagatgaatt tcgaatggat atagatgcaa atgcagattc
      961 cgtaccaatt tcagataaga aacaaacact tacatgctat ggttcgtctg gaaaggctga
     1021 gttagaggtg atcgatagac gaactgtgcg gcaaggctgg acgataacgg gtgcgatgac
     1081 gccatttacc aatagcggcg gcgatatact acaaacttcg ctaaaatatc aaagcaaatc
     1141 gccttccagt agtccgattt atttaaatac gacgaatcaa cctatcgaaa agaaacaatc
     1201 agctgtgaca gacccaaaat atgattctac catcgtcaat ctggaagaca gtttatccat
     1261 ggaaattgag ccaaatgatg cgctagtgaa cgattcctat gagtcgaaaa tcacctggac
     1321 actagaagat gcgcctcgac cataataagc aatcagctac atcaaacaaa aggagctatc
     1381 taaattgaaa aaaatgggat tcattttaat ctgttgttta tttgtgtgcg cctcgccgtt
     1441 ttatgtaaaa gcgaatacgg ataaggcgac aagtaaagcg ggagtgattt tcacgcatga
     1501 cccccgaaaa ccaagaactg gaacagatga cagaagcggc acttttccga ccaaagttcc
     1561 tccaaaaaga ctgccgaaaa caggagatac aactgatttt tatcttgttt tactagggtt
     1621 tggattcatt ttaatcgcga aaaaaggcta ttttaaggag gtgagggaag aaatccggtg
     1681 aaactgcacg acaaaaaaag gatatcagaa agaggagaat aataatgaca agtagaacag
     1741 taaaagtaac aacagcgagt ttattagcat taggtttgat tgtggcacca gtactttctg
     1801 gagattttgc ttcagctgcc acttccgtaa cgaaagattc caaagggatt gtaaaatttg
     1861 ataaaagcac cacgccagat ccggatccag taaatccaga tccagttgat ccagacccag
     1921 ttattccgga tccaactgat ccacccgtag gtacagacgg actttggatt ttagccgtat
     1981 ctgactggga ttttggtacg cataacgttt ctagcttatc ttcaggtgcg ttaaatgtac
     2041 atgcagcgga tgatacgatt tctacttatg tagacgcaaa tggtaatgga caacaagatt
     2101 tgccagggga agtttcagta actaagaaag taactcctta tgcacaaatt agtgatgttc
     2161 gtggtactaa tacaggttgg acactttccg tgacgggtag tgctttcaaa gattcttcta
     2221 caccagcaaa aatgattcca ggtgcagagc taactattcc caaatcgact gttagttcag
     2281 cgacttctac cgctcaagcg ccaactggat atgatagcgt aacaatttca atgactggcg
     2341 gcgcagcagt tccagtaatg gcagctaaag atatgcaaac agctacaccg accaacttta
     2401 acgatgacca ggggatgggc acatggacag atagctttgg ttcccaagca gtgtccgcaa
     2461 cagatacttc caaaccaaaa ttatccattc cgaaaaacgt cgttgtcgct gatggaactt
     2521 atcaaagtac attaacttgg actttaagcg atacaccagc agtttaacat ttttaagaga
     2581 aaacttcatt tttggatgtt gttttctctt tttacattga gcaattagga ggaaagagac
     2641 acttgaaaaa aatatgcgct atcatctttg cttgtgtact agctattctt tgttttccag
     2701 gacagcaggc gtacgcaaca gaaaatagta gtttttccgt aaaagcaatt ctccctgaca
     2761 atcaggcatc tagtgtgacc tatttcgatt tacaaatgaa accaaagcaa aaacaaagtt
     2821 taaatgtaga aattacgaac cagagtaaag aagaaatcac cgttaattgc gttgccaata
     2881 cagccgttac caatgagatg ggctacgtgg attattccat accaaatacg aaaccagata
     2941 aaacgttaaa ataccccttt gcagatatgg tgaaggaaag tgtctctgag gttacactta
     3001 agccaaacga aaccaaaatt tggacagcgg ctattcaaat gcccgctgaa aactacgacg
     3061 gtattatttt aggaggatta cattttcaag aaaagaaaga ggaggataaa gaaaaagact
     3121 ccagcgaaaa cgatgtccaa attaaaaatg aatacgccta cgtcattggt gtcaaattaa
     3181 ccgaaaaaac gaccgtcgta aagccagaat tagaattaaa tcaaattaaa ccagcgacca
     3241 gaaattaccg aaatgtagta gaaatgaatt tgcaaaatac aaaagcgacc ttagttggtg
     3301 gactggccgt ggatgcaaaa atatataaga aaggcagcga aaaagtttta catgaatcaa
     3361 aacgcacaga tttatccatg gcgccaaatt ccaattttaa ttatagtgta gattgggaaa
     3421 atcaagagtt aaaaccaggt aaatataaag tgcatttagt tgctaagaac aaagaagata
     3481 aatgggagtg gacaaaagaa ttcactatct cttctgatca agcaaaaaaa gccaataaag
     3541 tagctcttgg actggagaaa gactacacgt ggatgtatat cgtaggtgga gtattgcttt
     3601 tcattcttct tattatcgca acttactttg tcggcaaacg agcagcaaag aaaaaacagg
     3661 aaaatgaaaa atagcctaac gaaaaaacag cttgaaaatg agaatttacc tcgttttcaa
     3721 gctgttttta ttatttttcg attttttctg tttctacgac acgaagtcct ttgcgttcta
     3781 agtgggaaac aatttcgttt ttcttatctt ctgttacgcc aactggtaag gaaacaagta
     3841 cgcggcgaat gaaatcttcc gtttgattgt ctaaagtgat caagcttgag atgctcgaat
     3901 agcgatcgat aattttagtg attttagtta aggccccttg aacttcgcca gtcgcaatcg
     3961 taagaacata gctagttgtt ttcacattcc agccatcttg gagtaaacca agtaattttc
     4021 cgtgcgttaa aattccataa aagttacctt gctcatttaa aaccgcaata tatggaagct
     4081 ctttgattgt aaaaaagact tcaaagaaag atgcattgac gcaaatatgc ttcgtcgcat
     4141 ttttaattaa gctcattact gggtcgctaa gactaccacc gttagctgcg tgtttgtaaa
     4201 tatgcatttt ataaatatta cctaagaatt tttcaccttt ttcatctaat acaggaacac
     4261 agcgataacc agattcttca agtaaatgga tagcctcttg taaagttgca tctccaggga
     4321 cggttgttaa atttatttta gggatacaaa ggttttttat caacatgttc ttcactccat
     4381 tcttcttccc tttcatttta acgtaaagta ggacttttgt atagaaaatc actatta
//
LOCUS       DABQVC010000208         4435 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.208,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000208 DABQVC010000000
VERSION     DABQVC010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.208"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1932
                     /locus_tag="IBJ56_002523"
     CDS             <1..1932
                     /locus_tag="IBJ56_002523"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HAM3418766.1"
                     /translation="SLGERGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLL
                     ATRYLATDSERNVYELPQERWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATP
                     TLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAI
                     RGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQ
                     RLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDFYDESKGEGTFRE
                     KYEELVADETISKKIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNPNKHEGMVYSS
                     NLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVVAEEGTLERL
                     IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIAWDSEEAEKY
                     ADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEYFARRNYNSPEWQELAKEVA
                     EKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDLNLSTYP
                     YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKT
                     TYYVRSNDIDVEECEWCSS"
     gene            1988..3037
                     /locus_tag="IBJ56_002524"
     CDS             1988..3037
                     /locus_tag="IBJ56_002524"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HAM3418767.1"
                     /translation="MANQKEQLTRIKILEPLFPNRSTSIINGETSGILNWNDIPYPSF
                     YRAYKELSTNYWIPDEVDMKSDAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIYNI
                     AEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPTIIKRNE
                     PIMDAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISF
                     INRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETEWSEEVLQGIE
                     GIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRN
                     SSYKKTNMDNGFDDL"
     gene            3034..3471
                     /locus_tag="IBJ56_002525"
     CDS             3034..3471
                     /locus_tag="IBJ56_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HAM3418768.1"
                     /translation="MRILLAYDSLSGNTKMVADEIEEILQSEGHEVVSFRVSPLAEYP
                     LDEDFDLYVLGAWTVDYGRTPPDMKDFIAELAVKPENVAIFGTGETQWGMEFYCGAVD
                     RMAKYFGTSYPTLKIEQMPHTEQDVADIDNWVKKILALRSGIK"
     gene            3468..3794
                     /locus_tag="IBJ56_002526"
     CDS             3468..3794
                     /locus_tag="IBJ56_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HAM3418769.1"
                     /translation="MTSIEIKSPEEFQAHINGEELVYVDYWKDNCPNCKMLDLSFAEF
                     KNSEIASKVKVLKVKLEEMGENFFFDRDVQQTPTLVLYKGGEEIHRLNGFIPPNKIEE
                     AVSLNA"
     gene            3901..4200
                     /locus_tag="IBJ56_002527"
     CDS             3901..4200
                     /locus_tag="IBJ56_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HAM3418770.1"
                     /translation="MKQLQAEITAFLKERDWLDQYNYPKDLAISLSLEAAELLECFQW
                     KTDEIALKENREELLKEVADVLIYALQIAESMGADGEELVRMKLAENRRRTWPKK"
     gene            complement(4243..4419)
                     /locus_tag="IBJ56_002528"
     CDS             complement(4243..4419)
                     /locus_tag="IBJ56_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418771.1"
                     /translation="MKLAGLVLLLIGLIGFGFSFSITGLIGFGVCIISIILVIAGIFA
                     MIRSKKRRKRSYSY"
BASE COUNT         1542 a          758 c          893 g         1242 t
ORIGIN      
        1 agtctaggcg aacgtggtat ttattctggc aatattctaa aaaattattc taaagaagat
       61 ttgattgcag cagggaaatt aattgaccct gaaaaagata aattattcac ttataatggt
      121 ttgtatttac ttgcgactcg ttacttagcg actgactctg aacgtaatgt gtatgagttg
      181 ccacaagaac gttggttaac tatcgcactt tatttaatgc aaaatgaacc aaaagaaaaa
      241 cggatgaaac tagtagaaga agcttactgg gctttaagta atttatatat gactgttgca
      301 acaccgacac ttgcaaatgc tggaaaagtt ggcggtcaat tgtctagttg tttcattgat
      361 actgtagatg atagcttgca aggtatttat gacagtaata cagacgtcgc tagagtttct
      421 aagcacggtg gtggtgttgg cgcatatctt gggtatgttc gttcaacagg agctgctatc
      481 cgcggcgtca aaggcgcaag tggtggcgtt attccttgga ttaaacaatt aaacaatact
      541 gcggttagcg tagatcaatt aggtcaacgt aaaggcgcga ttgcagttta tttagatgtt
      601 ttccataaag atatcgaatc tttccttgat ttgcgattaa acaatggtga ccaacgttta
      661 cgcgcacatg atgtattcac tgcagtttgt atccctgata ttttcatgga agctgtagaa
      721 cgtcgtggcg agtggtattt gtttgatcca catgaagtaa aagcgaaaaa aggctggtac
      781 ctacaagatt tctacgatga atcaaaaggt gaaggtactt tccgtgaaaa atatgaagaa
      841 ctagtagcag atgaaacaat tagcaaaaaa attgttaaag ctattgatat catgaaacgt
      901 attatgatga gtcaattaga aacagggaat ccattcatgt tttaccgtga tgaagtaaac
      961 agaatgaacc ctaataaaca tgaaggcatg gtgtattcta gtaacttatg tacagaaatc
     1021 atgcaaaata tgagcccaac aaaaatgatt caagaaatta tttctggaga tcaaattgtt
     1081 atcacaaaac aagcgggaga ttttgttgta tgtaacttat cttctgttaa cctaggtcgt
     1141 gcggttgttg ctgaagaagg tactttagaa cgtttaatcg aagtagaagt acggatgtta
     1201 gataacgtta tcgacttaaa cgaactacca gtaccacaag ctactatcac gaaccaaaag
     1261 taccgttcta tcggacttgg aacatttggt tggcaccatc tgcttgctct taaaaatatc
     1321 gcttgggact cagaagaagc ggagaaatat gccgatgaat tatatgaaca aattaactat
     1381 ttagctattc gcgcaagtaa caaactagcg caagaaaaag gtgcttataa agtctttaaa
     1441 ggcagtgact ggaatactgg agaatacttc gcgcgtcgta actataattc acctgaatgg
     1501 caagaattag caaaagaagt agcagaaaaa ggtttgcgta atgcatatct tgtagctgta
     1561 gcaccaaata tgagtacagc tcaaattgct ggatccactg cttcaatcga cccaatttac
     1621 agtgcattct actatgaaga gaaaaaagat taccgtcgtc cagttattgc accggactta
     1681 aacttaagca catacccata ctacgaaaaa ggtgcttaca aagttgacca attcgcaagc
     1741 gttcgtcaaa acggtcgtcg tcaacgtcac gtagaccaat cactaagctt taacttctat
     1801 gtaccaagtg gtatcaaagc aagtaaacta cttgaactac acatgacggc ttggaatgaa
     1861 ggacttaaaa caacttacta tgttcgctct aacgatatcg atgttgaaga gtgcgaatgg
     1921 tgctcaagct gatacatctc taaaatactt tacacttagt acaaaatgaa agggagggct
     1981 tgcctagatg gctaaccaaa aagaacaact gacacgtatt aaaattttag aacctttatt
     2041 tcctaatcgt tctacttcaa tcataaacgg agaaactagt gggattttaa attggaatga
     2101 catcccgtat ccttctttct accgtgcgta taaagaactt tctactaact actggattcc
     2161 agacgaagta gacatgaaaa gcgatgcaaa acaatatccc gctctttcag aacaagaaaa
     2221 atatgctttt gatgcaatca ttggcttact tgcaacactg gattctccgc aaacacgttt
     2281 tatttataat attgcggaat atattaccga tccagctgtt catgcaaacg cagcgattat
     2341 cgcgcaacaa gaagtcattc ataatgaaag ttactcgtat gtacttgctt ctattacaaa
     2401 tttacaagaa caaaatcgtg tttttgaact tgcgagaaca catccgacaa tcatcaaacg
     2461 taatgagcca atcatggacg catatgatga cttcatgaat aacaaaacag gtgaaacact
     2521 tgtaaaagca ttaattcaat cttctatttt agaaggaatt aatttctata gtggttttgc
     2581 ttacttctac aatcttgttc gtcaaaataa aatgactgga acagggaaaa taattagctt
     2641 tatcaatcgt gatgaacttg ctcactcgaa gttcatttca gaagtaatcc gggcaatcct
     2701 tggtgaaaac ccagaattac aaacagaaga gctagtagaa tacacacatg atgctttccg
     2761 ccacgctgtt gaacttgaaa cagaatggtc tgaagaagtg ttacaaggta ttgaaggtat
     2821 tgatgtggaa gaaatggttg actacgtgaa atatcgggcc aacaaaatgc taggaatgct
     2881 tggtattcca gaactttatc caggacatag tgataacaca atgacatgga ttaaagctta
     2941 cgcagataac tttacagaaa caaaaaccga ctttttcgaa atgcgcaatt caagctataa
     3001 aaaaacgaat atggataacg gattcgacga tttatgagaa ttttgttagc ctatgattct
     3061 ctaagtggta atacgaaaat ggtggctgat gaaattgaag agattttaca aagcgaagga
     3121 catgaggttg tgtcctttcg cgtatctcct ctagccgagt atccgcttga tgaggatttt
     3181 gacttgtacg tgttgggggc atggacagtc gactacggaa gaacaccgcc ggatatgaaa
     3241 gattttatcg cggaactagc cgttaagccc gagaatgtag ccatttttgg tactggggaa
     3301 acacaatggg gtatggagtt ttattgcgga gctgttgacc gaatggcaaa atacttcggc
     3361 acaagctacc cgactttaaa aatagaacaa atgccacaca cagaacaaga tgtggctgat
     3421 atagacaatt gggtcaagaa aattttagcg ttaaggagtg gaatcaaatg acaagtattg
     3481 aaattaaatc acctgaagag ttccaagctc atataaatgg agaagaatta gtatatgtag
     3541 actattggaa agataattgt cctaattgta aaatgcttga tctttctttt gctgaattca
     3601 aaaactctga aatcgcaagc aaagtgaaag tattaaaagt aaaattagaa gaaatgggcg
     3661 aaaatttctt ttttgaccgt gatgtacaac aaacgccaac acttgtactt tacaaaggcg
     3721 gcgaagagat ccaccgttta aatggattta ttccaccaaa caaaattgaa gaagcagttt
     3781 cattaaacgc gtaatttaat gagtagcagg tctccttgta aataggtggc ttggtgctca
     3841 tttttttaca agtacttgcg atatttttca caaataaatt cttctaaagg agttaaaata
     3901 gtgaaacaac tacaagctga aattactgct tttctaaaag agcgtgattg gctagatcaa
     3961 tacaattatc caaaagattt ggcaatttca ttgtcacttg aagcagcaga attacttgaa
     4021 tgctttcagt ggaaaacaga tgaaatagcg ttaaaagaaa atcgtgaaga acttttaaaa
     4081 gaagtagctg atgtgcttat ctatgctctt caaattgcag agagtatggg ggcggacggc
     4141 gaggaacttg ttcgaatgaa attagcagag aatcgtagga gaacttggcc aaagaaataa
     4201 aaaaagctgc tttaccaaat gatgataagg cagcttttta ttttaataag aataagaacg
     4261 tttacggcgt tttttggaac gaatcattgc aaaaattcct gctataacta agataataga
     4321 aatgatacat acaccaaaac cgataagtcc ggtaatgcta aacgaaaagc caaaaccaat
     4381 caaaccaatc agaagtaaca ctaagccagc taatttcatt tgaaaactcc tttca
//
LOCUS       DABQVC010000209         4401 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.209,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000209 DABQVC010000000
VERSION     DABQVC010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4401
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.209"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..892)
                     /locus_tag="IBJ56_002529"
     CDS             complement(<1..892)
                     /locus_tag="IBJ56_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgE/DapE family deacylase"
                     /protein_id="HAM3418772.1"
                     /translation="MERQRKIQILKDIVNIDSTNGHEEQVANYLQKLLAEHGIESEKV
                     QYDVDRASLVSEIGSSDEKVLAFSGHMDVVDAGDVSKWKFPPFEAAEHEGKIYGRGAT
                     DMKSGLAAMIIAMIELHEEKQKLNGKIRLLATVGEEVGELGAEQLTQKGYADDLDGLI
                     IGEPSGHRIVYAHKGSINYTIKSTGKNAHSSMPEFGVNAIDNLLLFYNEVEKFVKSID
                     ATNEILGDFIHNVTVIDGGNQVNSIPEKAQLKGNIRSIPEMDNETVKQVLVKIINKLN
                     KQENMNLELIFDYDKQPVFSD"
     gene            complement(1026..2525)
                     /locus_tag="IBJ56_002530"
     CDS             complement(1026..2525)
                     /locus_tag="IBJ56_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418773.1"
                     /translation="MKRNKVILRIVVTLAAVLAITFWVGMSSKEVQAAVIEQPTPINE
                     IFTDPVVADNVKTLLEKADVTDEVTQTDLDSITQLSAKSAGITTIEGMQYLTNLSELE
                     LTDNQITDVSPLANLTKITELGLSGNPLKDVSALAGLKSLKMLHLIYTDITDVTSLAG
                     LTNLQELNLDINQITDISPLAALSNLQTLSLGYTQVSDLTPIANLSKLTILNAENCKV
                     SDISPLASLSSLTEVYLRENQISDVSPLANIPNLSIIELTDQIITNQPVYYQNKIIVP
                     NVIKGLSGELIAPDTISDNGTYTSPDLTWDLNSYINSVSYTFNQSVVFKNATVPFSGT
                     VTQPLTEAYTAVFDVDGEQTSLTVVVNELIEEPTVPTKEGYTFDGWYDAETNGNKWDF
                     AVDKMPASDITLYAKFTENEEPNASSSINVEPNDDNSINVEPDASNSITVKPTENNDG
                     TNNPNSSSDDKVNIKLPITGDEWNVLPIFVGAVLIGMGLVLFSKKRQTK"
     gene            complement(2737..>4401)
                     /locus_tag="IBJ56_002531"
     CDS             complement(2737..>4401)
                     /locus_tag="IBJ56_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014600431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418774.1"
                     /translation="AVVMAISFWVGTSSKEEVQAAVIDQPTPINEIFTDENLANAIKA
                     TLNKPSTTSDVSQAELDSISEVTAESSNIASLEGAQYLNNIDTLILNNNKITDLNSLA
                     GLSKLRILEANDNQLSDISALANVTSLHQLRLAGNQIKQLNGVSNLINLETIELSNNQ
                     ITDISPVSGLKNLIGLGIDYNDISDLSPIAGLAKLSHLTADNNQISDLSPISSLGAME
                     IMRLDKNQISDVTPIANLANLSYVFLAENQISDISSLQPLFNSPNFFGITLDNQKITS
                     EPVLYQQELVVPNNIKDEMGALISPDTISDNGVYASPNIKWNLANYTNQVSYTFNKQL
                     AQGSFSGTVTQPLHNAYTATFDVDGVKTNEVVEETKLLQEPTAPTKEGYTFTGWYDAK
                     TGGNKWDFATDKMPAEDITLYAQFTINSYTATFDIDGKLTTQKVTYQSLLEEPAAPTK
                     DGYTFIGWYDAKTGGTKWDFATDKMPAGNITLYAQFTKNATPDSNDPTTVTPTGNGNG
                     TSTPSNSGGNTTLPTAGDENTMLPIFVGVFLLGTATLILRKTIKVK"
BASE COUNT         1177 a          871 c          738 g         1615 t
ORIGIN      
        1 tatcactaaa tactggttgt ttgtcataat caaatattaa ttctagattc atattttcct
       61 gtttgtttaa cttattgata atcttcacta gcacttgttt cactgtttca ttatccattt
      121 ctggaatcga gcgaatattc ccttttagtt gcgctttttc agggatacta ttgacttgat
      181 ttccaccatc aattacggtg acattatgaa taaaatcgcc taatatttcg ttagtagcat
      241 caattgattt cacgaatttt tctacttcat tataaaatag caacaagttg tcaatcgcat
      301 taacaccaaa ttccggcatc gaactatgcg catttttacc agtggattta atggtataat
      361 taatggaacc tttatgcgca taaacaatcc ggtgtccact cggttcgccg ataatcaagc
      421 catctaaatc atctgcgtaa cctttttgcg ttagttgttc ggctccaagt tcaccgactt
      481 cttcaccaac cgttgctaat aatctaattt tgccatttag tttttgtttt tcttcatgaa
      541 gctcaatcat tgcaataatc atcgccgcta gacctgactt catatccgtc gcgccacgtc
      601 cgtatatttt cccttcatgc tctgctgctt caaaaggtgg gaacttccac ttcgagacat
      661 cacccgcatc aacgacatcc atatgccctg aaaacgccaa aactttctcg tcactggaac
      721 caatttcgct aactaggctg gctctgtcta cgtcgtattg taccttttcg gactcaatac
      781 cgtgttcagc taacaacttt tgcaaatagt tcgcaacttg ttcttcatgc ccattagtcg
      841 aatcaatatt cacaatgtct tttaagattt gaatttttct ttgtcgttcc atgtttacgc
      901 cctctttctt tgaattccac tctatgtttt cccgttccat aaaaaggcaa actcatcctc
      961 ctaatctcca atcaaaaaat ggcttagctc ctgcataatt cacagaagcc aagccattaa
     1021 tcgaattatt ttgtttgacg ttttttgctg aataaaacta agcccatacc gataagaact
     1081 gctcctacaa aaatgggaag cacattccat tcgtccccag taattggtaa cttgatgtta
     1141 actttatcat cacttgaact gttcggatta tttgttccat cgttattttc tgttggtttt
     1201 acagtgatgg aattgctagc gtcgggttct acattgatgg aattatcatc gtttggttcc
     1261 acattaattg aactactagc atttggttct tcgttctcag tgaacttagc atataaagtt
     1321 atatcactag caggcatttt atctaccgca aagtcccatt tattcccatt cgtttctgcg
     1381 tcataccagc catcgaatgt atatccttcc ttggttggaa ctgttggttc ttcaattaat
     1441 tcattcacaa ctactgtcaa acttgtttgc tctccgtcca catcaaaaac ggcagtgtaa
     1501 gcctctgtta atggttgggt gactgttcca ctgaaaggaa ctgttgcatt tttgaaaacg
     1561 actgattggt taaatgtgta actaacacta ttaatgtagc tgtttaaatc ccacgttaaa
     1621 tcaggactag tatatgttcc attgtcacta atagtatcag gtgcaataag ctcaccagaa
     1681 aggcctttta tcacatttgg aacaatgatt ttattttgat aatatacggg ttggttggta
     1741 attatttgat ccgtcaactc aataatagat aagttgggaa tattcgcaag gggactcaca
     1801 tcgctaattt gattctctct caagtaaact tctgtaagac tagataaact agcaagtggc
     1861 gagatatcgc ttactttaca attttcagcg tttaatatgg ttagtttaga taaattagca
     1921 attggggtta aatcgctcac ttgggtatat ccgagtgata atgtttgcaa gttagataaa
     1981 gctgctagtg gacttatatc cgttatttga ttgatatcca aatttaattc ctgcaaattg
     2041 gtaagacctg caagggaagt cacatcggta atatctgtat aaataagatg caacattttt
     2101 agacttttta atcccgcaag cgcacttaca tcttttaatg gatttccgga taatccaagc
     2161 tctgttattt tcgttaaatt tgcgagcgga cttacatcgg ttatttggtt atctgttagt
     2221 tctagttctg ataaattagt taagtactgc attccttcta tcgttgttat tcccgcagat
     2281 tttgctgata attgagttat actatctaaa tcagtttgcg taacttcatc tgttacatcc
     2341 gctttttcga gaagtgtttt cacattatca gcaaccactg gatcagtaaa aatttcattg
     2401 ataggggttg gttgttcaat taccgctgct tgtacttctt ttgagctcat cccaacccaa
     2461 aaagtaattg ccaatactgc tgctaaagtc actacgattc ttaatattac tttgtttctt
     2521 ttcattaaac tatctccttt gtatgatcgt tctgctttta gaaatttgta tgttctcgta
     2581 gttgagttac tatattatag cgtagtaggt tttcattcaa tcactaaaat tagacttgtt
     2641 accgttttag ttgtgacgtt tagatgaatt tctttgctaa taaaaaaaca gccgaattct
     2701 atagaaaaac tatagacctt agctgttttt ttgttgttat tttactttga ttgttttgcg
     2761 gagaataagc gttgctgttc ctaacaagaa aactcctaca aaaattggaa gcatggtatt
     2821 ttcgtcccca gctgtcggaa gcgtggtatt tccacctgaa ttgcttgggg tacttgtccc
     2881 attgccattt cctgttgggg taaccgttgt tgggtcattg gaatctgggg tggcattttt
     2941 agtaaactgg gcgtatagcg ttatatttcc agctggcatt ttgtctgtcg caaaatccca
     3001 tttagttcca cctgttttag catcatacca acctatgaac gtatagccat ccttcgttgg
     3061 cgctgctggt tcttctagca agctttgata agtgactttt tgcgtcgtta atttcccatc
     3121 gatatcgaat gtggctgtat agctattaat cgtgaactgc gcgtataatg tgatgtcttc
     3181 tgctggcatt ttgtctgtcg caaaatccca tttattcccg ccagttttcg catcatacca
     3241 gcctgtgaaa gtgtatcctt ctttcgttgg agctgttggt tcttgaagca atttcgtttc
     3301 ttccactact tcatttgttt tcactccatc tacgtcaaat gtcgctgtat aagcattgtg
     3361 aagtggttgg gtcactgttc cgctaaaaga accctgtgct aattgtttat taaatgtgta
     3421 acttacttgg ttagtataat tagccaagtt ccacttaata ttcgggcttg cataaacacc
     3481 attatcgcta attgtatctg gtgagattaa cgctcccatt tcatccttaa tgttattggg
     3541 gaccacaagc tcttgttggt acaatactgg ttcactcgtt attttttgat tgtctaaagt
     3601 aataccaaaa aaattaggtg aattaaaaag tggttgtaaa gaactaatat cactgatttg
     3661 attttcagct aaaaatacat agcttaaatt agccaaattc gcaattgggg ttacatcact
     3721 gatttgattt ttatctagtc gcataatttc catagcccct aagcttgaaa taggactcaa
     3781 atcacttatt tggttattgt ctgcagttaa atgacttaac tttgctaagc cagcaattgg
     3841 gcttaaatca ctgatatcat tataatctat tccaagacca attaagtttt tcaaacctga
     3901 aactgggctt atatccgtta tttgattgtt gcttagttct atggtttcta gattgattaa
     3961 attactaact ccatttaact gttttatttg atttccagct aatcttaatt ggtgcagact
     4021 tgtcacattt gctagtgcac ttatatcgct taattgattg tcatttgctt ctaatatcct
     4081 taatttagat agtcctgcaa gtgaatttaa atccgttatt ttattattat ttaaaattaa
     4141 tgtatctata ttatttaaat actgcgcccc ctctaaagaa gctatattgc tactttctgc
     4201 cgttacttca cttatagaat ctagctctgc ttgtgaaacg tcagatgtag tactaggttt
     4261 atttaaagtt gcttttattg cgtttgctaa attctcatct gtaaaaattt cattaattgg
     4321 cgtcggttga tcaattactg ccgcctgtac ttcctctttt gagctagtcc ctacccaaaa
     4381 gctaattgcc attactacag c
//
LOCUS       DABQVC010000210         4363 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.210,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000210 DABQVC010000000
VERSION     DABQVC010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4363
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.210"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..562
                     /locus_tag="IBJ56_002532"
     CDS             <1..562
                     /locus_tag="IBJ56_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Rgg/GadR/MutR family transcriptional regulator"
                     /protein_id="HAM3418775.1"
                     /translation="SLEGILLAEKEHNFELAREKVTYIWDRLSEADELFWNDILILRN
                     IFFIFENETAQHIVNRLISQLKKYRYLYPTLSIEISLHVNRATYLILDEEYELALHYI
                     ELSIKIAKHNHYYLQFCMAIAKKGIVLYKLGQKQKGKHFMQRALRVAKVLEEERILNG
                     IKNEIDYFLHDELQNLSLNEFTKIDI"
     gene            complement(618..1082)
                     /gene="smpB"
                     /locus_tag="IBJ56_002533"
     CDS             complement(618..1082)
                     /gene="smpB"
                     /locus_tag="IBJ56_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HAM3418776.1"
                     /translation="MPKGDGKLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARV
                     NLKDSYARIDKGEIFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESG
                     YSIVPLKMYIKDGYAKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKERQQ"
     gene            complement(1098..3479)
                     /gene="rnr"
                     /locus_tag="IBJ56_002534"
     CDS             complement(1098..3479)
                     /gene="rnr"
                     /locus_tag="IBJ56_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HAM3418777.1"
                     /translation="MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVK
                     ALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNE
                     VKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKR
                     LFGEVEIDLEDGLKPVDGHKVIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIH
                     KHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVTQ
                     LSNGNWKLGVHIADVTHYVTEGSPLDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLN
                     PQVDRFTMSCEMEIDEEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAP
                     IVPMLEKMQHLAEILRRKREKRGAIDFDFKEARVVVDEDGHPEAVVMRERSAGEHLIE
                     EFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPA
                     ALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPD
                     LIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFM
                     VDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQ
                     IYRIGDEVEVEVTKVVVDAREIDFALRSEGKPGPVSDKQKRQREKPIDKTRNFKSNQK
                     KGRNKRRAGKSEDVKPKSERKEDEWHTKPKKKKKKKPFYQGVAKESPKKKKRR"
     gene            complement(3513..4259)
                     /locus_tag="IBJ56_002535"
     CDS             complement(3513..4259)
                     /locus_tag="IBJ56_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAM3418778.1"
                     /translation="MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYT
                     CYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKL
                     GFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTPEQIDAEMVAYKDAPM
                     NTIAKLKDEINGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFK
                     ESGHVITLDKERKEVNQAILTFLDSLDWQE"
BASE COUNT         1153 a          963 c          732 g         1515 t
ORIGIN      
        1 ctcacttgaa ggtattttac ttgctgaaaa agaacataat tttgaacttg ctcgagaaaa
       61 agtaacctac atttgggaca gactttcgga agcggatgaa ttattttgga atgacatatt
      121 aattttaaga aatattttct ttatttttga aaatgaaacc gctcaacata ttgtaaatcg
      181 ccttatctct caacttaaaa aatatcgtta cctatatcca accctttcga ttgagatttc
      241 acttcatgtt aatcgtgcta cttatttaat tttagacgaa gaatatgaac tagctttgca
      301 ctacattgaa ttatctataa aaatcgctaa gcataaccat tactacttac aattctgtat
      361 ggctattgcg aaaaaaggaa ttgtgctgta taagctcggc caaaaacaaa aaggtaaaca
      421 ctttatgcaa cgagcactta gagtggctaa agtgcttgaa gaagagcgta ttctaaatgg
      481 tatcaaaaat gaaatagatt attttcttca cgatgaactt caaaatctct ctttaaacga
      541 attcaccaaa atcgacatat aaaaaaagcc taaatctagc ttctccaact tttggttgaa
      601 tgactagatt taggctttta ttgttggcgc tctttaaaag cgcgttcgat atcacgtttt
      661 gcttcttttt gttttaagtc ttggcgttta tcgtatttct ttttacctcg agctacaccg
      721 atgagtactt ttgcgtagcc atctttaata tacattttta gcggaacaat cgaataaccg
      781 gactctttcg tttctccaat taaacggctg atttgcttct tatgtaaaag caatttgcgc
      841 gttcttagtg gatcatgatt gtagcggttc ccttgttcat aaggactaat atgcatattg
      901 tgtaagaaaa tttccccttt gtcgatacgt gcataggaat cttttaagtt tacccgtgcg
      961 tttcttacgg atttaatttc agtaccttgc aggacaatgc cagcctcaaa agtttcttca
     1021 attgcgtaat cgtggcgcgc ttttttattt tgcgcaacta gcttaccatc accttttggc
     1081 ataactcccc atcctttcta gcgacgtttt ttcttcttcg ggctttcttt tgctacacct
     1141 tgataaaaag gttttttctt ctttttcttt ttaggttttg tatgccattc gtcttcttta
     1201 cgttctgatt ttggtttcac gtcttctgat ttaccagctc tacgtttgtt acgacctttt
     1261 ttctggttac tcttgaaatt tcttgtttta tcaatcggtt tttcgcgttg gcgtttttgt
     1321 ttatcgctca ctggacctgg tttaccttca ctacgaagcg caaaatcgat ttcacgagca
     1381 tccacgacta ctttggttac ttcgacttcc acttcatcac caatacgata aatttggcct
     1441 gttctttcgc caatcatcgc taattgattt tggtggaatt tgaagtaatc gcctttcatt
     1501 gcgctcacat gaactaaacc ttcaatcgta gttggaagtt cgataaataa gccaaaattg
     1561 gttaccgaac taatgattcc gatgaaacgt tcgcccactt tgtcgaccat aaattccgtt
     1621 ttcttcagtt cgtctgtttc gcgctctgct tcaacggcac ggcgctccat tttcgagctg
     1681 tgttcagcaa tctcaggaag ctcctcagcg cgtttttcta acgtttccgg acgaacatcc
     1741 ccgttaatta aatactctct aatcaacctg tgaacaatca agtccgggta ccgacgaatt
     1801 ggtgacgtga aatgtgtata aaaatcagta gacaaaccaa agtgtccggc gcttactgtg
     1861 tcatacttcg cttgttgcat cgaacgcagc ataacagtcg aaacaaccat ctcttctggt
     1921 ttacctttta cttcttctag tacttgttgt aaagcagctg ggtgaatatc gttagcagtc
     1981 cccttcacaa tcaaaccaaa gttcgtaata aattcaaaga accgcgctaa tttatcttct
     2041 tttggatctt catggatacg gtaaataaat ggtacatcca tccagtggaa atgctctgca
     2101 actgtttcat tggcagcaag cataaattct tcaatcaaat gctctcccgc tgaacgttcg
     2161 cgcataacga ctgcttctgg atgaccgtct tcatcaacaa ctacacgtgc ttctttaaag
     2221 tcaaaatcaa tcgcgccacg tttttcacgt ttacgacgaa gtatttcggc caaatgttgc
     2281 atcttttcaa gcattggaac aattggcgca tatttttccc gtaaagcttc gtccttttca
     2341 actaaaatat catttacatc cgtatacgtc atacgttctg ttgttttaat aatactttca
     2401 aaaatttcgt gattaaccac atgaccttct tcatcgattt ccatttcaca actcatagta
     2461 aaacgatcta cttgtgggtt aagcgagcaa attccgttcg atagtttatg tggcaacatc
     2521 ggaattacgc ggtcaaccaa ataaacactc gttccacgtt cttgcgcttc gacatcaagc
     2581 ggcgagcctt ctgtcacata atgcgttaca tccgcaatat gaacgcccag cttccagtta
     2641 ccgttcgaaa gttgcgtaac agttacagca tcatctaaat ctttagcgtc tgccccgtca
     2701 atcgtaataa tcatttggtc acgaagatca cgacggttac caatatccga atcatccacc
     2761 acatccggcg ctttacttac ctgctccatt acttcttccg ggaacccgat tgaaataccg
     2821 tgtttatgaa taatcgataa aatatccact cctggatcat tacggtgacc gatgattgat
     2881 ttaacaaccc ctcttgcacg cgcatgccca gttgcatatt ccgtcaattc aacgataact
     2941 ttatgcccat caactggttt taagccgtct tctaaatcaa tttccacttc accaaaaagt
     3001 cgcttgtcat ctggcatcac aattggagta ccagctaagt cttccatata agttccgacg
     3061 atttgcgttg tcttccgttc gacaattttc ttaatcgtcc cctctgccaa attatcgcct
     3121 ttacgtttcg taatcgttgc aaaaactaaa tcgccattca ttgcatcttt tacttcattt
     3181 ggtgggataa aaatatcgtc catttctttt tcttccggga gaacaaagcc aaaacctcgt
     3241 tcatgcgcgc gaaatgttcc ttttactaag tccatttttt ctggtaatgc ataccgattc
     3301 ttccttgagc ggacaatagt tccggaatct tccagtttca ctaaagcttt caccattaat
     3361 ttaaagtcat ccgcattgtt taaagctatt tctatttcca aatcttcaag cgcaaatgtt
     3421 ttatcaggcg ctgaagttaa tagattcata attttttctt ccatttgttt ttgttccact
     3481 tctgtccctc ctctctctgt tttaaaaatt gtctattctt gccaatctaa actatctaaa
     3541 aatgttaaaa tggcttgatt tacttctttt cgttctttgt ctaatgtgat gacgtgccca
     3601 gattctttaa accagtgcaa ttctttcttc gttgactcta ctgtatcata aattagctgt
     3661 gctccgctca catcaaccat atcgtctttt tcaccttgga cgaccattat tggcgcataa
     3721 atcatatcta tttcagccac gacgccattt atctcgtcct ttagtttagc gattgtgttc
     3781 attggggcgt ctttataggc aaccatttca gcatcgattt gttcaggtgt tttaccttct
     3841 aattttttat aattacgcac ataatctaaa aagccttgaa ttattggtga tgaactgtcc
     3901 attcttgttg gagtactcat ggctataatt ccctttaacg gcctagaaaa acctaatttt
     3961 agtgaaaaaa gcccaccgag tgaaagtccc gccacagcta tttccgtgta accaagtgat
     4021 tttaggtgat cataggcttc aagaacatct tcccaccaat cgtttggtcc cgtttttaac
     4081 agtaggtcag gagatacacc gtggcctctg tattgaggtg catagcaagt ataattgttt
     4141 tcttgtaaaa acctacctaa tattcttaca tccgctgagc tacctgtgaa accgtgcaag
     4201 agtaacactg ctcttttgcc tttttcgaat aggaatggtt gtggtggtgt tattttcata
     4261 gtaaatatcg ctccttggtt ctttttggag gtttggttga tctgggttgg atgttatttt
     4321 tgttggagtt ctaggggatt ggctgtattt aataatttat act
//
LOCUS       DABQVC010000211         4353 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.211,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000211 DABQVC010000000
VERSION     DABQVC010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4353
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.211"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            55..390
                     /locus_tag="IBJ56_002536"
     CDS             55..390
                     /locus_tag="IBJ56_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 domain-containing protein"
                     /protein_id="HAM3418779.1"
                     /translation="MGELGNIETRNGRTSFFDGGLLQYIGWTILGTLVTICTIGICYP
                     WALCMVYGWKINHTVIEGRRLKFQGSAVGLFGHWIKWLFLTIITIGIYGFWVFIKLED
                     WKVKNTIFK"
     gene            complement(447..518)
                     /locus_tag="IBJ56_002537"
     tRNA            complement(447..518)
                     /locus_tag="IBJ56_002537"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(483..485),aa:Arg,seq:ccg)
     gene            complement(638..2074)
                     /locus_tag="IBJ56_002538"
     CDS             complement(638..2074)
                     /locus_tag="IBJ56_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitin-binding protein"
                     /protein_id="HAM3418780.1"
                     /translation="MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKG
                     INVGVGSAQYEPQSVEAPKGFPASGPADGSIAGGGKYSLLDAQTANRWAKVDIQSGPL
                     TVEWTLTAPHRTSSWQYFITKKGWDPNKPLTRASLEPLTTIEADGSVPNALTKQEINI
                     PDDRSGYYVILGVWNIADTGNAFYQVIDANIINSSVAPAVDNEAPTEPTNLAATTTAK
                     NVSLTWTVSTDNVGIKGYEILRDGVVLGESQTASYEDTAVESNTAYTYTVRAKDFAGN
                     KSTLSDSIDVTTKEAPAVDNEAPTAPKSLMSHGQTETTIALCWQASTDNVEVKNYEIY
                     RNNTKIATSTKNMFEDTKLASNTSYNYKVYAVDTSGNRSLVSNEITIKTKPLDPLNTW
                     KSDQIYHAGDQVYYNGVAYTAKWWTKGNTPDTSDVWQTASRDIQIWNAQKAYNGGDKV
                     TYNGKTYQAKWWVRGEKPDSSSIWTLLN"
     gene            2231..2827
                     /gene="clpP"
                     /locus_tag="IBJ56_002539"
     CDS             2231..2827
                     /gene="clpP"
                     /locus_tag="IBJ56_002539"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HAM3418781.1"
                     /translation="MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSI
                     VSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSF
                     LLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQ
                     PYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKD"
     gene            complement(2877..4268)
                     /locus_tag="IBJ56_002540"
     CDS             complement(2877..4268)
                     /locus_tag="IBJ56_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAM3418782.1"
                     /translation="MTKVNSFFRKKSFHNPATDKHHLNKTLGAFDLTMLGVGAVVGGG
                     IFILPGQVASVIAGPGIIISFIIAGIACCLAALCYSEFASKLPVAGSAYTYSYHVFGE
                     GVAWILGWSLILEYGLAVAAIASGWSSYMKSLLAGFDLHIPTVISSAYDPSAGTYFDL
                     LAFVVVMVIGILLSFGIRESTRVNNIMVLVKIAVVVLFILVGAFYVKPDNWTPFLPFG
                     VQGVITGASTVFFAYIGFDAVSSAAEEVKNPQKNMPIGIISSLAICTLLYILLSAVLT
                     GVVPYTDLVDVSAPVAFALQAINQNWIAGLLSVGAIVGMTTVVLVMSYGGTRLLFAMG
                     RDGLLPKSFSKISKNDTPVRNTMIFATVMGLIASTVPMADLAQLINIGTLFAFAMVSI
                     GIFFLRRNPDLNQKGFRTPFYPVVPALSFLLCVYLMINLSKTTWIAFGIWFVIGILVY
                     TFYGRKHSALRIK"
BASE COUNT         1335 a          875 c          770 g         1373 t
ORIGIN      
        1 gggtataaac gttctaacga ttatataaat aataaaggga agttggtttg caaaatggga
       61 gaattaggta atatcgaaac acgaaacggg agaacatcat tttttgacgg aggtttactg
      121 caatatattg gttggacaat tcttggcact ttggtgacga tttgtacgat tggtatttgc
      181 tatccatggg ctttatgtat ggtttatggc tggaaaatca atcatacagt tattgaagga
      241 agacgcttga aattccaagg ttctgcggtt ggactttttg gtcactggat taaatggctc
      301 ttcctaacaa tcattactat cggaatttat ggtttctggg ttttcattaa actagaagat
      361 tggaaagtaa aaaatacgat ttttaaataa aatgaaaaaa catcttacaa catggctttt
      421 gccagatgtg ggatgttttt ttagtatgcc ctcggaggga atcgaacccc cattttaaga
      481 accggaatct tacgtgctat ccgttgcacc acgagggcta tatgtaggcc agaaatgctt
      541 accgtacgaa taataattat agcgaaattc gtagtgtttt acaagtttta ttttaaatga
      601 agaagccagc gcctccaaag atttgctggc tcaagtatta atttaataat gtccaaattg
      661 atgaactgtc aggcttctcg cctcgtaccc accatttcgc ttggtatgtt tttccgttat
      721 acgtaacttt atctccgcca ttataggctt tttgagcatt ccagatttgg atatctctac
      781 ttgctgtttg ccaaacatca cttgtatctg gagtgttccc ttttgtccac catttcgctg
      841 tataagctac tccgttatag taaacttggt cacctgcatg gtaaatttgg tccgatttcc
      901 aggtgttcag tggatctagc ggttttgttt taatagtgat ttcattactt actaatgaac
      961 gattgccaga tgtatctact gcatacactt tataattata gcttgtattg ctggctaatt
     1021 ttgtatcttc aaacatgttt ttcgtggatg ttgcaatttt tgtattgtta cgataaattt
     1081 cataattttt cacttctaca ttatctgtgg aggcttgcca acaaagagca atagttgtct
     1141 ccgtttgtcc atgagacatt aaactttttg gtgcagttgg tgcttcatta tctactgctg
     1201 gggcttcttt tgtcgtcaca tcaatactgt cgcttaatgt agatttgttt ccggcgaaat
     1261 cttttgctcg aacagtgtaa gtgtatgcgg tatttgattc tacagctgta tcctcataag
     1321 aagctgtttg actttctccg agtactacgc catcacgtaa aatttcataa ccttttattc
     1381 ctacgttatc ggtagaaaca gtccaggtca aacttacatt cttagcggta gtagttgctg
     1441 ctaaattagt cggttctgtc ggcgcttcgt tgtcaacagc tggtgctaca ctagaattaa
     1501 taatgtttgc atcaattact tgatagaatg catttcctgt atcagcaatg ttccaaacgc
     1561 ccaaaataac gtagtatcct gaacgatcat ctggaatatt aatttcttgt tttgttaaag
     1621 catttggtac gcttccatcc gcttcaatcg ttgtgagtgg ctctaatgat gctctagtta
     1681 acggtttatt tgggtcccaa ccctttttag taataaaata ttgccagctg cttgttctgt
     1741 gtggcgcagt taatgtccat tctacagtta atgggcctga ttgtatatct acttttgccc
     1801 aacggtttgc agtttgagcg tctaacagtg aatatttccc accgcccgca atactcccgt
     1861 cagcaggtcc gcttgctgga aatccttttg gagcctccac actttgtggt tcatattgtg
     1921 ctgatccaac cccaacatta atccctttgt tggctaaata tacacgactt gctggttttg
     1981 atatgtatcc atgagctgaa gcagttgttt gaaaaagaac tacagctaac gtaaacaccg
     2041 caaaaaacat tcctatcttc gtcattttct tcatgatgca ccttcctttc agcatagttc
     2101 attatacctt tttgttaaat tttatagaaa taattcgcct cagactttat cgtttgacct
     2161 agtttgacca ttcgtgtatg atataaacaa agctaattta aaattcacat ttaacaggag
     2221 gaatcttgat atgaacttaa ttccaacagt aatcgaacaa actagccgcg gtgaacgtgc
     2281 atacgacatt tattcccgtt tattaaaaga cagaattatt atgttaggat ctgcaattga
     2341 tgataacgtg gcgaattcga tcgtttctca attactcttc ttagatgcac aagatcctga
     2401 aaaagatatt ttcctatata tcaattcacc aggtggaagt atttcagctg gtatggccat
     2461 ttacgataca atgaatttcg ttaaagcgga cgtacaaact atcggcatgg gtatggcagc
     2521 ttccatgggc tcattcttac taacagctgg tgcaaatggc aaacggtttg ccttgccaaa
     2581 cgctgaaatt atgattcacc aaccacttgg tggcgctcaa ggtcaagcga ctgaaatcga
     2641 aatcgctgct cgccacattt taaaaatcaa agaacgtatg aatacgatta tggctgagaa
     2701 aactggtcaa ccgtatgaag tcattgctcg tgatacagat cgtgataatt tcatgactgc
     2761 acaagaagca aaagattacg gcttaattga tgatatcatc attaacaaat ctggcttaaa
     2821 agactaataa aaaaaaagag gttttgcaca aaatgcaaaa cctctttttt tataccttat
     2881 tttatacgaa gcgctgaatg ttttcttccg tagaatgtat acactagtat tcctatcaca
     2941 aaccaaatac cgaatgcaat ccatgttgtt ttagataagt taatcattaa atatacacaa
     3001 agcaaaaagg aaagtgctgg tactactgga taaaatggcg ttctaaatcc tttttgattc
     3061 aagtctggat ttctccgtaa aaagaaaatc ccaatagaaa ccatcgcaaa agcaaacaac
     3121 gtaccaatat taattaattg tgctaaatct gccatcggta cagtagaagc aattagtccc
     3181 attactgtcg caaaaatcat cgtatttctc acaggtgtat catttttgct tatttttgag
     3241 aacgattttg gtaataatcc gtcacgtccc attgcaaata acaagcgtgt accaccataa
     3301 gacataacaa gtacaaccgt tgtcatccca acaatcgcac caactgacaa caagcccgca
     3361 atccagtttt gattaatagc ttgaagcgcg aaagcaactg gtgcactaac atcaactaaa
     3421 tccgtataag gaacaacccc tgtaagtact gcagaaagta aaatataaag tagtgtacag
     3481 attgccagtg aagaaataat tcctattggc atattttttt gtggattttt cacttcttcc
     3541 gcggcacttg atacagcatc aaagccgata taagcaaaga aaactgtgga agctcctgta
     3601 atgactcctt gtacaccaaa cggcaagaac ggcgtccaat tatcaggttt cacatagaaa
     3661 gctcctacta aaataaataa tacaaccact gcaattttta ctaacaccat aatattattc
     3721 actcgtgtgg attcacgaat accaaaacta agtaaaatac caattaccat aactactaca
     3781 aatgcaagta aatcaaaata ggttccggca ctcgggtcat aagctgaaga aatcaccgtt
     3841 ggaatatgta agtcaaatcc tgctagtaga ctcttcatat aagaagacca accacttgcg
     3901 attgcagcaa cagccagacc atattctaaa atcagcgacc accctaaaat ccatgcaaca
     3961 ccttccccga acacatggta actgtaagta tatgcgctac ctgcgactgg taatttagaa
     4021 gcaaattccg aataacataa tgccgccaaa cagcaagcaa ttcccgcaat aataaaagaa
     4081 ataataattc ctggtcccgc aatgacagaa gctacctgcc ctggaagaat aaatatccct
     4141 cccccaacaa ccgctccgac tccaagcatc gttaaatcaa acgctcctaa cgttttgttc
     4201 agatgatgtt tatctgtcgc tgggttatga aaactctttt ttctgaaaaa agaattaact
     4261 ttcgtcataa aaattcctcc ttcttaaatt ccaattttca gttaatttat atgtgtattt
     4321 ttaaactaac ttgaaaacta ttattcatag tac
//
LOCUS       DABQVC010000212         4345 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.212,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000212 DABQVC010000000
VERSION     DABQVC010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4345
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.212"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            430..1368
                     /locus_tag="IBJ56_002541"
     CDS             430..1368
                     /locus_tag="IBJ56_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418783.1"
                     /translation="MSGSGAFFPMSVKKFLEKGITSLSEEEKMSTLHYLENAYHQEPC
                     NEEIVHRLIQFYNQTDKTKKAQEIGQNFLTMNGYDKEILGELSVTFMKEDNMDTYFTL
                     VRHYMEEEKKEATEEIADNVIPFPKQFVPRRDIREFASWHTTEQLEFLQEARFLEIDS
                     FLPAFKAFLADDSFSPFVQSMIFELMQEKEINEDITVQKIDKHGIFNPSLVPMLADNK
                     FAEAIFAGLAEMLEHSNPSLLEQVIGIIQQHLFMLYPFELEPQEVDVWINAYYKWANA
                     MYGNYCVISDDVNHLAVEEAISIIEELEIRQQNYFI"
     gene            1483..2766
                     /locus_tag="IBJ56_002542"
     CDS             1483..2766
                     /locus_tag="IBJ56_002542"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HAM3418784.1"
                     /translation="MSVKWEKQEGNVGKLTFEIEQEKVKEGLDRAFVKVRKTLNVPGF
                     RKGKVPRQIFNQRFGEEALFQDALDILLPEVYSAAIDEAGIDPVDTPQVNIESMEKGE
                     TWVLTAEVTVKPEVKLGDYKGLEVEKRETELTTEELEAELKQLQERQAELVVKEDAPA
                     ENGDTVILDFEGFKDGVAFEGGQAENHSLELGSGQFIPGFEEKLVGLKAGDEADIELT
                     FPEEYHAEDLAGQPVVFKVKLHEIKTKEVPALDDELAKDIDEEVETLDELKEKISKRL
                     QEAKEESVAQAKQEEVIAKAVENAEVDIPHAMVHHEADHLMNHFAQDLQAQGLTPELY
                     YQFTGQTEEAMHAQMEKDAEKRVKMNLVLEAIAEAENIEPTEEAIDEEISTLAEKYGM
                     EKDAVRAALGDMSELKSDLKIRKAIDVLLDSAVEK"
     gene            2951..4210
                     /gene="clpX"
                     /locus_tag="IBJ56_002543"
     CDS             2951..4210
                     /gene="clpX"
                     /locus_tag="IBJ56_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017358145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HAM3418785.1"
                     /translation="MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCNE
                     IIEEELGISEFVDFGEVPKPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETK
                     EDEVELSKSNICLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENIL
                     LKLIQSADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVA
                     SVPPQGGRKHPHQELIQIDTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKD
                     DETYLSRVVPEDLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRM
                     LELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIPSRDDITKCII
                     TEKAARGEEEPQLQLEDGSIIPIKTSA"
BASE COUNT         1563 a          652 c          895 g         1235 t
ORIGIN      
        1 ggtgaaaatt atatactatc aaatgcagtt ataagtaaat tcccagtgga agaattacct
       61 gaagaagaat tgttcttaga tggagggcaa acaacggaag aaacagatag cattgaagaa
      121 atttatcagg aggtctatca agaagttttg gaagaattcg gtgaataaaa aagtttaaac
      181 gcccgtaaga cctcggtgta aaaatcgagg tctaattttt ttgaaataaa aatttgataa
      241 aaaatgaagt ttaatctaga cagtttttcg tgataaaaca ccataaaagc ctcttgacag
      301 aaccagacta tacaagtaga atgaatcaaa ccaaatcaac atttttgcta gaaatggtta
      361 gatttttaac aataagggta aatccagtta gtataaataa agctttttca actaaaagga
      421 gataaaacga tgagtggaag tggtgctttt tttccaatga gtgttaaaaa atttctggaa
      481 aaagggatta cctcgttgtc cgaagaagaa aaaatgagta cgctacatta tttggagaat
      541 gcgtatcatc aagagccttg caacgaggaa attgtacata gattaattca attttataat
      601 cagacagata aaacgaagaa agcgcaagaa attggacaaa actttttgac gatgaatggc
      661 tatgataagg aaattcttgg agagctatct gtaacattta tgaaagaaga taatatggat
      721 acgtacttca cattagttag gcattatatg gaagaagaaa aaaaagaagc aacggaagaa
      781 atagctgaca atgttattcc ttttcccaaa cagtttgtcc caagaagaga cattcgtgaa
      841 tttgcgtctt ggcatacgac ggaacaattg gagtttttac aagaagctcg tttcttagaa
      901 atagattcat ttttgccagc ttttaaagct tttctagcgg atgatagttt ttccccgttt
      961 gttcagtcga tgattttcga attaatgcaa gaaaaagaaa taaatgaaga tattacagtt
     1021 caaaaaatag ataagcacgg tatttttaat ccaagtcttg tgccaatgct tgctgataac
     1081 aaatttgcgg aagctatttt tgctggactc gctgagatgc tcgaacatag taatccaagt
     1141 cttttagagc aagtgattgg tattattcag caacatctat ttatgcttta tccatttgaa
     1201 ttagagcctc aagaagtaga tgtttggata aacgcatact ataaatgggc gaatgcaatg
     1261 tacggtaatt attgtgttat ttcggatgat gtgaatcact tagcagtaga agaagctatt
     1321 tccattattg aagagttaga aattaggcag caaaattatt ttatataatg atatttcttg
     1381 ttttcaagtc agggatatct gtgttattat tagtgagtat ggctgaaact tgtcatgaga
     1441 gtaattaaat tgaactaaat agatgatgga gggaattata ccatgtcagt aaaatgggaa
     1501 aaacaagaag gtaatgttgg aaaacttact tttgaaattg aacaagaaaa agtaaaagaa
     1561 ggtttagata gagctttcgt aaaagtgcgt aaaactctta atgtgcctgg cttccgtaaa
     1621 gggaaagttc cacgtcaaat tttcaatcaa cgttttggtg aagaagctct tttccaagat
     1681 gcgcttgata tcttgcttcc agaagtatat tctgcagcaa ttgacgaagc tggtattgat
     1741 ccagtggata ctcctcaagt aaacattgag tctatggaaa aaggcgaaac ttgggtttta
     1801 acagcagaag ttactgtaaa acctgaagtg aaacttggag attacaaagg tcttgaagta
     1861 gaaaaacgtg aaacagaact tacaacagaa gaattagaag cggaattaaa acaattacaa
     1921 gagcgtcaag ctgaattagt tgttaaagaa gatgcaccag ctgaaaacgg tgacactgtt
     1981 atccttgatt ttgaaggatt taaagacggc gtagctttcg aaggtggaca agctgaaaat
     2041 cattctctag aacttggaag cggacaattc attcctggtt ttgaagaaaa attagttggc
     2101 ttaaaagctg gcgacgaagc ggatatcgag ctaactttcc cggaagaata tcatgcggaa
     2161 gatttagctg gacaacctgt agttttcaaa gtgaaattac acgaaatcaa aacaaaagaa
     2221 gttccagctc ttgacgatga gcttgcaaaa gacatcgacg aagaagtaga aactttagat
     2281 gaattaaaag aaaaaatctc taaacgttta caagaagcaa aagaagaatc tgttgctcaa
     2341 gctaaacaag aagaagttat tgcgaaagct gttgaaaatg cagaagtgga cattccacac
     2401 gcaatggttc accatgaagc tgatcattta atgaatcact ttgcacaaga tttacaagca
     2461 caaggtctaa ctcctgaatt atattaccaa ttcactggcc aaacagaaga agctatgcac
     2521 gcacaaatgg aaaaagacgc tgaaaaacgc gtgaaaatga acttagtgct tgaagcaatt
     2581 gcggaagctg aaaacattga gccaacggaa gaagctattg acgaagaaat ttctacatta
     2641 gctgaaaaat atggtatgga aaaagacgca gttcgtgctg cacttggcga tatgagcgaa
     2701 cttaaatctg atcttaaaat ccgcaaagct atcgacgttt tattagatag tgcagtggaa
     2761 aaataagcta cgactgattt aataatttca ttaaaaaatg gggggcatga gttatactcg
     2821 tgtccttctg aatgtagaaa tatgaataca gatgattggc atttctaata aacaaatgat
     2881 attattaaca cacataggag atgaaaaaat cgcctataag caacatacct atgcgaaggg
     2941 gtgaaatatt ttgtttaaat ttaacgacga aaaaggccaa cttaaatgct ccttttgcgg
     3001 aaagactcaa gatcaagtac gtaaattagt ggccggtcca ggtgtttata tttgtgatga
     3061 atgtatcgag ctttgtaatg aaattattga agaagagcta ggtatttctg aatttgttga
     3121 ttttggtgaa gtaccaaaac ctcaagaaat ccgtcatata ttaagtgact atgttattgg
     3181 tcaagaacgt gctaaaaaag cacttgctgt agcagtttac aatcactaca aacgtattaa
     3241 ttccaatgaa acgaaagaag atgaagtaga actttcgaaa agtaacattt gtctaattgg
     3301 tccaactggt agtggtaaaa cacttcttgc tcaaacatta gcgcgaattc tcaatgttcc
     3361 atttgctatt gcagatgcga cttcacttac agaagctggt tacgttgggg aagatgtaga
     3421 aaatattctt cttaaactga ttcaatcagc agattacgat gtggaaaagg ccgaaaaagg
     3481 tattatctat attgacgaaa ttgacaaagt tgctcgcaaa tccgaaaacc catctattac
     3541 tagagacgtt tccggtgaag gcgtacaaca agcgctactg aaaattttgg aaggtactgt
     3601 cgcaagcgtt cctcctcaag gcggtagaaa acatcctcat caagagttaa ttcaaattga
     3661 tacaggaaat attctattta tcgttggtgg agcttttgat ggaatcgaac aaatcgttaa
     3721 aaatcgaatg ggtgaaaaag tcattggctt tggcacagat aatgcgaaac taaaagatga
     3781 tgaaacttat ttatctcgcg ttgttccaga agatttactg aaattcggtt taattcctga
     3841 atttatcggc cgtttaccgg ttatagcaac gcttgaacaa ttagatgaag ctgcgcttgt
     3901 ttccattttg acagaaccga agaatgcttt agtaaaacaa tacaaacgta tgttagagct
     3961 tgatgatgta gaacttgaat tcgaaccaac tgctctaatt gaaattgcga aagaagcgat
     4021 tgaacgcaaa accggagcgc gtggtcttcg ttcgattatc gaacagatta tgcttgaagt
     4081 gatgttcgaa attccttctc gtgatgacat tacgaagtgt ataattactg aaaaagcagc
     4141 tcgtggtgaa gaagaaccgc aactgcaatt agaagatggt tctattattc caattaaaac
     4201 atctgcatga ttagaatgcg cgtcgtaatt ggcgcgcatt ttttctatca aaccagcttg
     4261 ttttactgta atatctgact tgtttcgtgc tatactttat taatattaat tggagaggat
     4321 aaaaagacat gaaaagtgaa aacaa
//
LOCUS       DABQVC010000213         4324 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.213,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000213 DABQVC010000000
VERSION     DABQVC010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.213"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..489)
                     /locus_tag="IBJ56_002544"
     CDS             complement(<1..489)
                     /locus_tag="IBJ56_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HAM3418786.1"
                     /translation="MKMDTLGFLELNSISKGIEAVDTMLKAANSELIYAKASCPGKYY
                     ILIAGTVDSVAQSIEAGTKIGAANIVGNLVIPRVSDQVIKAINKTEVPDEMNAVGVME
                     YYSCSGSIIAADAAVKAADVQLMDIRLATGIAGKSFVVLTGDTAACEAAVEAGLAAAK
                     EEA"
     gene            complement(486..1850)
                     /locus_tag="IBJ56_002545"
     CDS             complement(486..1850)
                     /locus_tag="IBJ56_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization protein"
                     /protein_id="HAM3418787.1"
                     /translation="MSQMSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECE
                     PLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS
                     VTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAP
                     VVRKQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDKST
                     IAEKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCPRKQLGH
                     DIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACPMGLSPRQVNIHVKK
                     ELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVF
                     IPTKMHIGAPSIPVVSEGDIVKKGDLIAKIPDASLGANIHASIDGQIIRITEEQVHIK
                     KVMS"
     gene            complement(1969..2448)
                     /locus_tag="IBJ56_002546"
     CDS             complement(1969..2448)
                     /locus_tag="IBJ56_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HAM3418788.1"
                     /translation="MKYPIMLDITGKRVVIIGGGKVALRKVKGLLHTRADILIVGLDV
                     LPEIKELQVQVKEEAYRAEHLIGAFLIFICTNNPEVNQMVLKDRLPEQLVNDTTEQKN
                     SDFFNMATVSKNELLVGISTGGGNPGYAKKVKREVRQLVENLETEEIGKRNKNDKTC"
     gene            2540..2947
                     /locus_tag="IBJ56_002547"
     CDS             2540..2947
                     /locus_tag="IBJ56_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAM3418789.1"
                     /translation="MFNQAKRISTFFTFNGNGEEAFNFYLDTFPDAKKIGLTYFTKPE
                     QGGDIGKVLNATFEIKGASFMIMDMTNNASPDFSWATTTLYFADTEDEFDTLFEKLAK
                     EGTVMMGPEAVEALRKVAWVTDKYGITWQLAFV"
     gene            3078..3650
                     /locus_tag="IBJ56_002548"
     CDS             3078..3650
                     /locus_tag="IBJ56_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HAM3418790.1"
                     /translation="MAENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLL
                     LESISNDPITIFINSQGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEK
                     ENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISK
                     DTDRNFWLSVNEAKDYGIVNEIIENRDGLK"
     gene            3715..4062
                     /locus_tag="IBJ56_002549"
     CDS             3715..4062
                     /locus_tag="IBJ56_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418791.1"
                     /translation="MKLTKENFQKLDQIHLSLENRHSMSEIIAILSESYIEITQNGVV
                     KDFSYYKSLTTLGNSSLEIMDYDIKILDETKVLSYYKLKNTSENSYTMRSNVWIIENG
                     SWKLTFHQGTKIV"
     gene            complement(4097..>4324)
                     /locus_tag="IBJ56_002550"
     CDS             complement(4097..>4324)
                     /locus_tag="IBJ56_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418792.1"
                     /translation="PVTPVNPSNQVNPIDPVKSVLQVTETLMKQTTSVNTIVAKDNRN
                     LPKTGDSGMHSSLVSGLMLAVSSVILLRKRK"
BASE COUNT         1341 a          925 c          724 g         1334 t
ORIGIN      
        1 tgcttcttct ttggctgccg caagtccagc ttccacagcc gcttcacatg ctgctgtatc
       61 accagttaga acaacgaaag atttaccagc aatccccgtt gccaaccgaa tatccattaa
      121 ctgaacatct gcagctttta ctgcggcatc tgcagcaata attgatcctg aacaggaata
      181 atactccata acaccaactg cattcatctc atctggcact tccgttttgt taattgcttt
      241 aattacttgg tcggacacgc gaggaatgac taaattcccg acgatatttg ccgcaccaat
      301 cttcgttcca gcttcaattg attgagctac agaatctact gtccctgcaa ttaatatata
      361 atacttccca gggcagcttg ctttagcata aatcaattcg gagttggccg cttttagcat
      421 tgtgtcaacc gcctcgatgc ctttcgaaat actatttaat tcgagaaatc ctaatgtatc
      481 cattttcatg acatcacctt cttaatatga acttgttctt cggttatacg aataatttga
      541 ccgtcaatac ttgcatggat atttgcccca agagacgcat caggaatttt cgcaattaaa
      601 tcaccttttt tcacgatgtc cccttcactt actactggaa tagacggcgc gccaatatgc
      661 attttcgttg ggataaatac ttcatctaca tctagataat gcattgtttc taaatgaacg
      721 tctgcatatt gttgtaagcc cattttgatt agaatatttt tgggagcaat tgatttatat
      781 tcacgcatcg gatcaggcgt aaattctttt ttatcagttt gataacgaac gccttgtttt
      841 aaaagttctt ttttcacatg aatatttact tggcgcggtg agagccccat cggacaagca
      901 attacctcac aaatgccaca ttcacagcaa atcatcgctt cttcccaaat cggatctggt
      961 ttaatatccg ttatatcttc tgcaaccgcg aaatggcgca taactttatg cggatgaata
     1021 tcgtgaccta attgttttct tggacataaa tccgaacaaa gtgaacactg aatacaagcc
     1081 gattttgttt cattaaaaat ttgttccact gtttggtaat gtagcttgtg cagataacca
     1141 gtatcctctg ccacaatcaa acccgaagtt gttttcgtta ctactttttc agcaatggta
     1201 gacttgtcat ttaatttccc catcattggt ccaccatcta aaaataaata ctcgtctaaa
     1261 ttagttccac cagctgctgc taaacagact tcaaatggcg ttccaactgg gacatctaaa
     1321 agtttcggct ctccaactgc tccagttact gtcagctgtt tacgaacaac tggtgcgtca
     1381 tcttgaattg catgaaagac gttccacatt gtcgagacat tcgatacaat acagccaacc
     1441 attagtggaa taccgcttgg tggcacaacg cgtccagtca cttcaaagac catgacttgc
     1501 tcgtcaccag ttggatagac attatccatc tcatgtattg tcacacttgc atctagttct
     1561 gtaattgctg accgtaaagc cgcaatttcc tctgtgtaat accgttttgt tgcaataacg
     1621 gcaaattctg cacctacttg gcttttaacc atttcaattg ctttaatcgt ttctactgca
     1681 tggtttctca tgacaaaatg atctgttttt aggagcggtt cacattccgc tgcgttaata
     1741 attaagtatt ccacttcacc gctaaatttg gcatgggtcg gaaagcccgc tccaccacaa
     1801 ccaacaactc cggcatcttt aatcttttct aaaatggaca tttggctcaa caccctctta
     1861 atagtttttc agtatacttc aatgatagag cgtttacatt ccaaaatcta tagtaaaatt
     1921 ttgcaaccta aaagagagca atataataga ataaaaaacc tactaaaatt agcaggtttt
     1981 atcattttta ttacgctttc cgatttcttc tgtttctaaa ttttctacta actggcgtac
     2041 ttcccgtttt actttcttgg cgtatccagg attcccgcct cctgttgaaa taccgactag
     2101 caactcattt tttgatacag ttgccatatt gaaaaaatcg gaattctttt gttcagtcgt
     2161 atcattcact agttgttctg gcaagcgatc tttcagtacc atttgattta cttctgggtt
     2221 attcgtacaa ataaatatca gaaaagcacc aattagatgt tctgcccggt atgcttcttc
     2281 tttcacctgc acttgaagct ctttaatctc tggcaaaacg tctaacccga caattaaaat
     2341 atcagctctg gtgtgaagca gcccctttac tttacgaagc gccaccttcc caccgccaat
     2401 tatgacaacc cgtttccctg taatatcaag cattatcgga tatttcatca tcaagccccc
     2461 gcacattttt cttcatttta acacataatt gaaacatttt tcgggtatag ttaaaataat
     2521 tcaaaaggag gtaaaataaa tgtttaatca agcaaaacga atctccacat ttttcacgtt
     2581 taacggcaat ggcgaggaag catttaattt ttatttagac actttccccg atgcgaaaaa
     2641 aatcggacta acttacttta caaaaccaga gcaaggcggc gatattggca aggttctcaa
     2701 tgctactttt gaaataaaag gtgcatcatt catgattatg gacatgacta acaacgcctc
     2761 ccctgacttt agctgggcca ctacaaccct ttattttgca gatacggaag atgaatttga
     2821 cactcttttt gaaaaactgg ctaaagaagg tacagttatg atggggccag aagcagtaga
     2881 agcgcttcga aaagtggcat gggttacgga taaatatggc attacttggc aactcgcatt
     2941 cgtataaaat taagaagaga aaacgccgtc ctaaagcgtt ttctttttta tattcaaaat
     3001 gtttgaccat tttcgaccat tatgataaga tacctgtatt acaaataaac taaggctttt
     3061 taaggaggaa ttttttcatg gcagagaata caaagaatga aaacatcaca aacatcctta
     3121 cccaaaaatt gattgataca cgcacagtgt taatttacgg ggaaatcaat caggagttag
     3181 ccgaggacgt ttctaagcaa cttttactac ttgaatctat tagcaatgat ccaattacga
     3241 tttttattaa tagccaaggc ggacacgtcg aagctggtga cacgattcat gatatgatta
     3301 aatttattaa accgacagta aaagtcgttg gaactggttg ggttgcaagt gccggcatta
     3361 ccatttactt agctgccgaa aaagaaaatc gctttagcct tccaaatacg cgctatatga
     3421 ttcaccaacc tgctggcggt gtccaaggtc aaagcacaga aatcgaaatc gaagcaaaag
     3481 aaattatccg gatgcgcgaa agaattaatc gcctaatcgc tgaagcaacc ggtcaatcat
     3541 acgaaaaaat ctccaaagat acagaccgca acttctggct ttctgtaaat gaagcaaaag
     3601 attacggcat cgtaaatgaa atcatcgaaa atcgcgatgg cttaaaataa aaaccaaaag
     3661 gttcacttac aaaatgaagt gaaccttttt tattcccttt atggaggact taaaatgaaa
     3721 ttaacgaaag aaaattttca aaaacttgat caaattcatt tatcactcga aaaccgtcac
     3781 tccatgtccg aaattatcgc tattttaagc gaatcttata ttgaaatcac acaaaacggt
     3841 gttgttaaag acttttccta ttacaaatcg ctaacaacac ttggcaatag cagtttagaa
     3901 atcatggatt atgacataaa aattttagac gaaacgaagg tcttatccta ttataaattg
     3961 aaaaacacaa gtgaaaatag ctatacaatg cgaagcaacg tctggattat cgaaaatggc
     4021 tcgtggaaac tcacctttca ccaaggtaca aaaatcgtat agaaaaggaa tttgactaaa
     4081 agccaaattc ctttttttat tttcgttttc gtaataaaat cacgctagaa acagctagca
     4141 ttaaaccact aactaaacta gaatgcattc cactatcccc tgttttcggt aaatttctat
     4201 tatctttagc tactatcgta ttaacagaag tagtctgttt cattaaagtt tcagtaactt
     4261 gaagaactga tttcactgga tcaattggat ttacttgatt tgacgggttt actggagtga
     4321 ctgg
//
LOCUS       DABQVC010000214         4227 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.214,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000214 DABQVC010000000
VERSION     DABQVC010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4227
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.214"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            417..644
                     /locus_tag="IBJ56_002551"
     CDS             417..644
                     /locus_tag="IBJ56_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3850 domain-containing protein"
                     /protein_id="HAM3418793.1"
                     /translation="MTKTHELKITPEFFAAVTEGRKTFEIRKNDRDFQVGDILILREW
                     NNEFSGFQIAVEVVYMTDYEQKDGFVVLGIV"
     gene            656..943
                     /locus_tag="IBJ56_002552"
     CDS             656..943
                     /locus_tag="IBJ56_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418794.1"
                     /translation="MKLKINDDYVIRNSQFQYILSKQNGVDKNGTEIFKDVGYYPTID
                     KALQAFVDYQIKTSEINSFEELASELNAIRELLVDIASKLEITIPSTEEEK"
     gene            940..1218
                     /locus_tag="IBJ56_002553"
     CDS             940..1218
                     /locus_tag="IBJ56_002553"
                     /inference="COORDINATES: protein motif:HMM:NF019467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HAM3418795.1"
                     /translation="MKNITQEYVEGVKDHKGFTVIKAPVVSEAVANWFERNKEALEYR
                     IGKYIYDFNIHAQESDAFYRFMNNVIGKPLETLISMQYGYYVQKEVSE"
     gene            1215..1616
                     /locus_tag="IBJ56_002554"
     CDS             1215..1616
                     /locus_tag="IBJ56_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418796.1"
                     /translation="MTSTIKISEKDKVFQIATEAGWVEQTGMQVTIDGIDFAIYPFHA
                     ENNIFIQVSEVDSGGVLINFPADFIDVFVLDTRDKAIEYYKDNVIPLVQKKIGKNGLD
                     GFRKAVEKLKRYMFETHGERPEIKDIEGESK"
     gene            1616..2098
                     /gene="ssb"
                     /locus_tag="IBJ56_002555"
     CDS             1616..2098
                     /gene="ssb"
                     /locus_tag="IBJ56_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAM3418797.1"
                     /translation="MMNRVVLVGRLTKDPELRYTPAGVAVTTFTLAVNRAFTNQNGER
                     EADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTRNYEDNDGKRVFVTEVVAESVQF
                     LEPKNNNVEGATSNNYQNKANYSNNNQTSSYRADTSQKSDSFASEGKPIDISDDDLPF
                     "
     gene            2117..2299
                     /locus_tag="IBJ56_002556"
     CDS             2117..2299
                     /locus_tag="IBJ56_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418798.1"
                     /translation="MTAETAIKKLRNRSMSIRQMANAIAEVTNYQISEIESMGDEEIE
                     AKYTAYVINEASEYAK"
     gene            2244..2648
                     /locus_tag="IBJ56_002557"
     CDS             2244..2648
                     /locus_tag="IBJ56_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1064 domain-containing protein"
                     /protein_id="HAM3418799.1"
                     /translation="MKRNIRRTSLTKQASTRSKYNAKKVVIDDIKFDSKAEAAYYQQL
                     KLLKMSGEVVSFDLQPEFILQDSFVKNGKKYHAIKYRADFLVRYKDGHEELIDVKGML
                     TNEFILKRKLFEMRYMQSIKCVKLKGGQFVEV"
     gene            2652..3035
                     /locus_tag="IBJ56_002558"
     CDS             2652..3035
                     /locus_tag="IBJ56_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2481 domain-containing protein"
                     /protein_id="HAM3418800.1"
                     /translation="MTVMEMTKSKARQREIISYIANNVVELEELLKLQKELNNLMKEN
                     TEEKQKTYWTKTFDRIVKKKKWAEITIHEFADLRNAGLTCYAIAEHFKVSKSIVFNYT
                     QRNKKEYYKLFDMDEYQRNKEIWND"
     gene            3175..3609
                     /locus_tag="IBJ56_002559"
     CDS             3175..3609
                     /locus_tag="IBJ56_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418801.1"
                     /translation="MGQLFNLPQIEDINYIQTVRAVRKFFKDYLTLRVMAGDRKFPTM
                     TTMYKITPPNFGNEFHSKVEDAAIHNVDNVHAAQEAVKKYDAILNQLEHIHRKILFEK
                     FIHNLQDITIMLDIPYEERQYKREKRKAVIELATTLGIEVLN"
     gene            3869..>4227
                     /locus_tag="IBJ56_002560"
     CDS             3869..>4227
                     /locus_tag="IBJ56_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418802.1"
                     /translation="MSFILEVGSLADWVSGLATAGALFWAIKLNSNENRKRLTILFRH
                     SFVSKKNGIIISDGKPKDFIITPVNNSKFSLEINFRQILLVPSLMDRLLFRAEPKQLS
                     NLEALLKQLENKANWEIV"
BASE COUNT         1593 a          567 c          930 g         1137 t
ORIGIN      
        1 ggtgaaagag gtggcgaaat aatgtgtgag tattgtaaga atgactctat gatgaataac
       61 gagcctttac taagttttga tgaagagtat aaagaacctg gtgttgttag actagatagc
      121 actggcaact taggagtttt cagctactac ggtttaacag ctaggaatat caattactgt
      181 ccaatgtgcg gaaggagttt ggaataaatg actaaacaaa gccggaaaaa taaagaatac
      241 gtctatgagt tgatatgtag tttttggaac aatgagaagt cgctaggtat attcaaaaca
      301 agagcagcag cggaaagggc tatgtatgac gatatagacg acacgccgaa gcagatttat
      361 acagattatt acgaaatata taaacgacca atatacgagt gaaaggaagc gtctaaatga
      421 ctaaaacaca cgaattaaaa ataacgccag aattttttgc agctgttacg gaagggcgta
      481 aaacattcga aattagaaag aatgaccgcg atttccaggt aggagatatt ttgattttac
      541 gcgaatggaa caatgaattt tcaggctttc agatcgctgt tgaagtagtt tacatgacgg
      601 attatgagca aaaagacgga tttgtagttc tggggattgt ataggaggaa atgagatgaa
      661 attaaaaatc aatgacgatt atgtaataag aaatagccag tttcaataca tcttatccaa
      721 gcaaaatggc gtagataaaa acggaacaga aattttcaaa gatgttggtt actatccaac
      781 tatagacaaa gctttacagg catttgttga ctatcaaatt aaaacgtctg agataaacag
      841 ttttgaagaa ttagcaagtg aattaaatgc tatcagagaa ttgctagttg atattgctag
      901 taaattagaa attacaattc catcaacgga ggaagaaaaa tgaaaaatat aacacaagaa
      961 tatgtggaag gcgtcaaaga tcataaagga tttactgtga ttaaagcgcc agtggtttca
     1021 gaggctgtgg cgaattggtt tgagcggaat aaagaggcgc tagaataccg cataggaaaa
     1081 tacatttatg atttcaatat acatgcacaa gagagcgacg ctttttatag atttatgaac
     1141 aatgtaatag gaaaaccact agaaacacta atatctatgc aatacggcta ttatgtgcag
     1201 aaagaggtaa gcgaatgact agcacaataa aaatatctga aaaagataaa gtgttccaga
     1261 ttgcgacgga agctgggtgg gttgaacaga ctggaatgca agtgacgatt gacggaatag
     1321 actttgcaat ttatccgttc catgcagaaa acaatatttt tatacaagta agtgaagtag
     1381 atagcggcgg agtattaata aatttcccag ccgattttat agacgttttt gttttagaca
     1441 ctcgagataa agcaatcgaa tattataaag ataatgtgat tcctttagtt cagaaaaaaa
     1501 tcggaaagaa cgggttagat ggatttagaa aagctgttga aaaactgaaa agatacatgt
     1561 ttgaaactca cggagagcga ccggaaatta aagatattga gggggaaagc aaataatgat
     1621 gaatcgtgta gtacttgtag gacgattaac aaaagaccct gaattacgtt acactccagc
     1681 aggcgtagca gtaacgactt ttacattagc tgtaaaccgc gctttcacta atcagaatgg
     1741 agaacgagaa gccgacttta ttcaatgtgt tgtttggcgt aaaccagcgg aaaatgttgc
     1801 taatttcttg aagaaaggaa gcatggcggg cgttgatggt cgaatacaga ctcgaaatta
     1861 tgaggacaac gacggtaaac gcgttttcgt tacggaagta gttgctgaat cagttcaatt
     1921 cttagagcca aaaaataaca acgtagaagg cgctacatcg aataattatc aaaacaaggc
     1981 taattattca aataacaatc aaacaagctc atatcgagcg gatacgagcc agaagagcga
     2041 ttcatttgca agtgaaggta agccgataga tatttcagat gatgatttgc cattttaagg
     2101 gaaagggtga ataaaaatga cagcagaaac agcaataaaa aagttgagaa atagatcaat
     2161 gagcatcaga caaatggcta atgcgattgc agaagtcaca aactaccaaa ttagcgaaat
     2221 agaaagtatg ggggacgaag agattgaagc gaaatatacg gcgtacgtca ttaacgaagc
     2281 aagcgagtac gcgaagtaaa tacaatgcga agaaagtagt tattgacgat ataaagttcg
     2341 atagcaaagc agaagcagca tattatcagc aattgaaact attaaaaatg agcggggaag
     2401 tagtgagttt cgatttacag ccagagttta ttttgcagga ctcatttgta aagaatggga
     2461 aaaagtatca tgcgattaaa tatagagctg actttctcgt tcgatacaaa gatggtcacg
     2521 aggaattaat cgatgttaaa ggcatgttga caaatgagtt tatactcaaa cgaaaactat
     2581 ttgaaatgcg ttatatgcaa tcaattaagt gtgtgaaatt aaaaggcggg caatttgtgg
     2641 aggtgtaaca aatgacagta atggagatga cgaagagtaa agcaaggcag cgggaaatta
     2701 ttagttatat agcaaataac gttgtagaac tagaggaatt actaaagttg caaaaagagt
     2761 taaacaatct gatgaaagaa aatacagaag aaaagcaaaa aacttattgg acaaaaacgt
     2821 ttgatcgcat cgtgaaaaag aaaaaatggg cggaaattac aattcatgaa ttcgctgatt
     2881 tacgtaatgc aggactaacg tgttacgcaa ttgcagagca tttcaaagtg tcgaagtcga
     2941 tagtctttaa ttacacacaa agaaacaaaa aagaatacta taagctgttt gatatggatg
     3001 aatatcaacg gaataaggag atatggaatg attgataaag tagctaaatt tataggagct
     3061 ttgactattt acgctttatg gatcctagcg ctgatttttg tactaggatt agcggttaaa
     3121 gggatatttt gggcttggag taatatgttt taataattat aagggggcga ctttatggga
     3181 caattattca atctaccaca aattgaagat ataaactaca ttcagacagt cagagcagta
     3241 agaaagttct ttaaagacta tttaacgctg cgagtgatgg ctggtgatcg taaatttcca
     3301 actatgacga ctatgtacaa gattacgcca ccaaattttg gcaatgagtt tcattcgaaa
     3361 gtagaagatg ctgcaattca taatgtcgat aacgttcatg cagcacaaga agcggttaaa
     3421 aaatacgatg ctattttgaa tcagcttgag cacattcata gaaagatact gtttgagaag
     3481 ttcattcata acttacaaga tataactatt atgcttgata ttccttacga agaaaggcaa
     3541 tacaaaagag agaaaaggaa ggctgttatt gaattagcaa caacgcttgg aattgaagtg
     3601 ctaaattaaa aatggcactt ttctggcact ttttgagtga aaaaaggtga taaaatgtta
     3661 ttagtgagaa gtgaagatga ttacaaaaat aaatcatata ttgagtctgc gctccacttc
     3721 tcatatccta tctgcactgg atgtaaaaca cgcatgcggc gctgactggt gcgttaacca
     3781 gttttttaaa tatatagccc tttccatctg ttgaaaattg agcaggtggt ttttatttgg
     3841 tatagtgaaa aataaaaggg tgttgcaaat gagttttata ctagaggttg ggagtttagc
     3901 tgactgggta agtgggttag cgacagcagg agctttgttt tgggctataa aattaaatag
     3961 taacgaaaat agaaaaaggc taaccatatt atttagacat tcatttgtta gcaaaaagaa
     4021 cggtataatt ataagtgatg gaaaaccgaa agattttata attactcctg taaataatag
     4081 taaatttagc ttggaaatta attttagaca aatattatta gtgccaagtt tgatggatag
     4141 attattattt agagcagaac ccaaacaatt atcaaattta gaagctcttt taaaacagtt
     4201 ggagaataaa gcaaattggg aaattgt
//
LOCUS       DABQVC010000215         4194 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.215,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000215 DABQVC010000000
VERSION     DABQVC010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4194
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.215"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(244..1092)
                     /locus_tag="IBJ56_002561"
     CDS             complement(244..1092)
                     /locus_tag="IBJ56_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HAM3418803.1"
                     /translation="MNKNKTGWNIAKIIVGALIFSLAVNVFAIPNNLGEGGVTGLTMM
                     LYYLLGWTPAVTTFIFNGILLIIGYKFLDRMTIVWTIVAISFTSIFLHFSEPLAFVAN
                     QTIVAAIFAGLMMGIGMGLIMNGGGTTAGSAILAKIANKYLGWNTSYALLFFDLLVVI
                     PSVFVIGFENMLFTIVSLYISTKVLDFILEGYNPKKSVTIISDYYEEIATEIDANLER
                     GITLFNGQGFYMRQDKKILYIVISRDQLLPLTKIVNKYDEKAFFIINDVQSVVGEGFT
                     KQITSE"
     gene            1711..2424
                     /gene="treR"
                     /locus_tag="IBJ56_002562"
     CDS             1711..2424
                     /gene="treR"
                     /locus_tag="IBJ56_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HAM3418804.1"
                     /translation="MNKKNKFFDIYLELEQDITSGVYPAGTLLPSENVLAKRFSVSRE
                     TIRKALVLLLENGCIQKLQGKGSIVIDRERYSFPVSGLTSFKELQKSEHMNATTEVIR
                     NERTTLPDRIADFAGLPHGSNCLAILRVRYLEGEATILDYDYLLDKTEPIANEILEDS
                     LYQYLENEKGYEISYAQKEITVEPLNAEDKKYLALHGDTHVVVVKSTVFLKDTTLFQY
                     TESRHRLDKFRFIDFARRR"
     gene            complement(2455..4101)
                     /gene="treC"
                     /locus_tag="IBJ56_002563"
     CDS             complement(2455..4101)
                     /gene="treC"
                     /locus_tag="IBJ56_002563"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HAM3418805.1"
                     /translation="MTKFAQKTIYQVYPKSFYDTTGDGTGDIPGITAKLDYLQKLGIE
                     MIWLNPFYPSPQNDNGYDIADYTAVDPLFGTMDDVTTLIKEAKKRNIGIMIDLVLNHT
                     STEHPWFKKALAGDPFYRDFYYFRPAKADGSPPTNWVSKFGGNAWEKLPDSSEYYLHL
                     YDVTQADLDWANPNVREALFDVVNFWIDKGVEGFRLDVLNVIAKPKFLEDDFEGDGRR
                     FYTDGPGIHAYLKELHERTFGDKPIITVGEMSSTDIDNCIRYSNPDEKELSMVFHFHH
                     LKVDYPDGEKWRLADVNFENLKSIFHTWQVAMSEENGWDALFWNNHDQPRALGRFASD
                     KPEHYYHSATLLGATIHFMRGTPFVYMGEEIGMMNPKFPTIDDYVDVETLNHFDILQK
                     NGLSEQEVMAIIKERSRDNSRTPMQWDDSQNAGFTTGTPWLKVADNASEINVQAALSN
                     KTSIFYFYQKLIALRKEYPVIQTGDYTPYWTDEDLIIAYKRSNEITSLLSIHHFGSTT
                     KKIQLPNEFLNAKVLLSNYERQTISSELELAPYETLTLIR"
BASE COUNT         1405 a          812 c          714 g         1263 t
ORIGIN      
        1 tgaatatcga atcctaagtg tgatgagccc gatgatgatt aataaactac caaccatcaa
       61 attctctaag tcgctaaaat cccaaaaaat agagattccg atattagata gtcctagaaa
      121 aacaaaaacc aagccaacaa caagtaaaac caaataagcc ggtttagaaa ttttcataag
      181 gacgcctcat ttacattaaa aataatttcc acattattgt aacataagtt gagagaaacg
      241 acatcactca cttgttattt gttttgtaaa gccttccccc acaacacttt gtacatcatt
      301 aataataaag aatgctttct catcatattt gttgacgatt ttggtgagcg gcagtaattg
      361 atcacgactt attacgatat aaagaatttt tttatcttga cgcatataga aaccttgacc
      421 gttgaaaagg gtaataccac gctctaaatt cgcatcaatt tcagttgcaa tttcttcata
      481 ataatccgat ataatcgtga cagatttttt aggattgtaa ccttcaagaa tgaaatcaag
      541 tactttggtt gaaatataaa gcgaaacgat ggtaaatagc atgttttcaa aaccgattac
      601 aaaaacagaa ggaataacaa caagtaaatc aaagaatagc aacgcataac tcgtattcca
      661 accaagatat ttattagcaa ttttcgctaa aatagcgcta ccagcagtag ttccgccacc
      721 attcataatt agtcccatac caattcccat cattaatccg gcaaaaatgg ctgcgacaat
      781 cgtttgattt gccacgaaag caagcggctc agaaaaatgt aaaaagatcg aagtgaaact
      841 aatagcaaca attgtccaga caatcgtcat tcgatcaaga aacttgtaac caataataag
      901 taaaatacca ttaaatataa aagtagtgac tgcgggagtc caaccaagca agtaataaag
      961 catcattgtt agcccagtaa cgccgccttc tcctaaatta ttcgggatag caaaaacgtt
     1021 gacagctagc gagaaaataa gcgcccccac gataattttt gcgatgttcc aaccagtttt
     1081 atttttgttc atctccattt ctcctttcca tgcaaaaaaa gacccaagaa taccactaaa
     1141 caggcactct ggagtctttt tataaaaaaa gcattaactg acatctttgt cattaattgt
     1201 ctcaccataa aaaattgcta ttcatttcaa cacaatttac aatataccat aaaaaataag
     1261 catcttcaag ccttttttaa gtataagtaa ttagccaaaa atcgctaaaa atggcattaa
     1321 attaagtaaa aataaaccta caagaacact aataacaatt ttgatgacaa gtggtttttc
     1381 actttctgtt tttttcaatt tgttttcctc cttaatgtgc gcttacttag cccagtgtac
     1441 aaattcattt tttaatggca tataagtggc tgtttttttc ttatagattt ggtaagcaag
     1501 tataaatccg agaaacgcag gaacgataat tgcaaaaata gttaaaataa ctttagtcat
     1561 agaaaatacc tcctcttaaa tcaaaacaca tgttcagacc ttactactaa tagtgtacca
     1621 aatttcacgt gattttggta ataaagcgag ctagcaaatt tcggttacaa ttatgggtaa
     1681 atgtgctaca atagccttgg gtgagtaaat ttgaataaaa aaaataagtt ttttgacatt
     1741 tatttagaat tagagcaaga cattacatca ggcgtttatc cagcaggcac actacttcca
     1801 agtgaaaatg tcctggcgaa gcgtttttcg gtatcccgtg agaccattag aaaagcactt
     1861 gtattattgc ttgaaaacgg ctgtattcaa aagctccaag gaaaaggatc gattgtcatt
     1921 gaccgagaac gctattcttt tccagtctct ggtttaacta gttttaagga attacaaaaa
     1981 tccgaacata tgaatgcgac aacggaagtc atccgaaatg aacgaaccac tttaccagat
     2041 cgaattgctg attttgctgg tcttccgcac ggctcaaact gcttagctat cctcagagtg
     2101 cgctatttag aaggagaggc aactattttg gattacgatt atttattaga caaaactgaa
     2161 ccaattgcga atgagatttt agaagactct ttgtatcaat acttagaaaa tgagaaaggc
     2221 tatgaaatca gttatgctca aaaagaaata accgtggaac cgctgaacgc cgaagataaa
     2281 aaatacttag cattacatgg tgatacgcat gtagttgtcg taaaaagtac cgtgttttta
     2341 aaagatacaa cactttttca atacacagaa tcgcgtcacc gactggataa attccgtttt
     2401 atagattttg caagaagacg ctaaaaagcc tgagaattgt ttctcaggct ttttttatcg
     2461 aattaaagtt aatgtttcat aaggtgctaa ttccagctca gaactgattg tttgacgttc
     2521 ataattagaa agaagtactt tagcatttaa aaactcattt ggtagttgaa tttttttcgt
     2581 agtcgagcca aaatggtgaa tggaaagaag cgaagtaatt tcatttgaac gcttataggc
     2641 aataatcaaa tcttcatccg tccaatatgg cgtataatca cccgtctgaa tgacagggta
     2701 ttctttccgt aatgcaataa gcttttggta aaaatagaaa atgctcgttt tattagataa
     2761 ggctgcttga acatttattt cacttgcatt atccgctact tttagccatg gagtaccagt
     2821 tgtaaagcca gcattttgcg aatcatccca ttgcataggt gtccgactat tatctcgcga
     2881 acgctctttg ataatcgcca taacttcttg ctcactaagt ccgttttttt gtaaaatatc
     2941 aaaatggttg agcgtttcca catccacata atcatcaatc gtaggaaatt ttggattcat
     3001 catcccgatt tcttccccca tataaacaaa cggtgtcccg cgcataaagt gaatcgttgc
     3061 gccaaggagg gttgccgaat gataataatg ttccggtttg tcggaagcaa agcgaccaag
     3121 tgctcgaggt tggtcatggt tgttccagaa aagcgcatcc catccatttt cttctgacat
     3181 cgcgacttgc cacgtatgga aaatagattt taagttctcg aaattcacat ccgctaaacg
     3241 ccatttttct ccatcaggat agtctacctt caaatgatgg aaatgaaaaa ccatcgataa
     3301 ttctttttcg tctggattac tataacgaat gcagttgtca atatctgtag aggacatttc
     3361 tccaaccgtt ataattggct tgtcgccaaa agttcgttca tgtagttctt ttaagtaagc
     3421 atgtattcct ggtccatctg tataaaaacg gcggccgtcg ccttcaaaat catcttctaa
     3481 aaacttaggt ttggcaatca catttaatac atctaaacga aaaccttcca cgcctttatc
     3541 aatccaaaaa ttcacgacat caaagagtgc ctcgcgtaca ttcggattgg cccagtctaa
     3601 atcagcttgc gtaacatcgt ataaatgcaa atagtactca gaggagtcag gcaatttttc
     3661 ccaagcatta ccaccgaatt tggaaaccca atttgttgga ggggaaccat cggcttttgc
     3721 tgggcggaaa tagtaaaaat cacgatagaa tggatcacca gcaagcgctt ttttaaacca
     3781 aggatgctct gttgaagtat gattcaatac taagtcaatc ataataccaa tatttctttt
     3841 tttcgcttcc ttgataagcg ttgtcacatc gtccatcgta ccaaataaag gatcaaccgc
     3901 ggtatagtca gcgatatcat agccgttatc attttgcgga gaaggataaa atggattcag
     3961 ccaaatcatc tcaattccga gtttttgtaa ataatcaagc ttggcagtga taccgggaat
     4021 atccccagta ccatcgccag tcgtatcata aaaggatttc ggatacactt gataaattgt
     4081 tttttgagca aactttgtca taaagggaag cctcactttt tagttggttg tttttgcaga
     4141 ttcacgatac tcctttttac caaacgtacg aattggtgca gtatctactt tgtt
//
LOCUS       DABQVC010000216         4179 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.216,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000216 DABQVC010000000
VERSION     DABQVC010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4179
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.216"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            1..516
                     /locus_tag="IBJ56_002564"
                     /pseudo
     CDS             1..516
                     /locus_tag="IBJ56_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730955.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
     gene            513..1109
                     /locus_tag="IBJ56_002565"
     CDS             513..1109
                     /locus_tag="IBJ56_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418806.1"
                     /translation="MTLSIKSIDSFEKDCIIEEIASLVFAGFKSKFTKMLFKETEAHD
                     IIYAFCHYIYTEKGENLLIAIQDELVCGCMFVTGKSDSHQKLYQNLRKFLPFSQCLKL
                     IFLLSLLSHKPVQNERYIDFITVSPNFRGQGIGKTLISHCLETFHDEKITLYVAKNNN
                     RAYKLYRNLGFQVIQKENSTLMGVLTGIKEWRKMEWIQ"
     gene            1082..2104
                     /locus_tag="IBJ56_002566"
     CDS             1082..2104
                     /locus_tag="IBJ56_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3418807.1"
                     /translation="MAKNGVDTMKRWKKITIVMSAIIVILVAILFIGNNFEMNETRVT
                     IPTTGGKLSAVVTTPKHEKPKGIIVFVHGDGAQEATQNGGYRPLMERFSKQGYISVSW
                     DKLGVGNSSGNWLNQSMEDRANEVNQVIEWMKVKYPDSTTKIGLWGASQAGWVIPKAM
                     NANNEIAFSILAAPAINWMRQGEYNTGWQAKDAGKTTKEVKQAQQNFLTDSALISKNK
                     TYESYKQNGGKEKMTPDRYNYIRKNMNQDATLDLSKVKAKIYLVLAEKDKNVDSAETK
                     EVYTQQIKKENLETQTIPNVSHQMINPAIANSELLINIVGLMVPKYFLVDDAYLDYCV
                     QVVSKQ"
     gene            complement(2118..2573)
                     /locus_tag="IBJ56_002567"
     CDS             complement(2118..2573)
                     /locus_tag="IBJ56_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418808.1"
                     /translation="MEYEQLLQSELGELEIIREELQNKEYRGMIVKTAKDGTMTRTRL
                     AKKTDKKAGYFVAFWEKDEFGKNCPFDENDSADFLCIVVIDDDLNGIFVFPRQCLIEK
                     GILTSEAGIGKMAARFYPTWCQDLNKTARKTQAWQQAYFKNYSIRKEDH"
     gene            complement(2573..3016)
                     /locus_tag="IBJ56_002568"
     CDS             complement(2573..3016)
                     /locus_tag="IBJ56_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418809.1"
                     /translation="MILINKRAKKQDYQTILAIWEKSVIATHDFLAAEDRQFYKEQIP
                     LFLDNVELFLWFAGEEVVGFSGTSERELDMLFLEPIATGNGYGSQILSWLIENKQINL
                     VDVNEQNENATRFYLKHGFVVSSRSDADGFGKPYPILHLQLKGES"
     gene            complement(3033..3371)
                     /locus_tag="IBJ56_002569"
     CDS             complement(3033..3371)
                     /locus_tag="IBJ56_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418810.1"
                     /translation="MNEFPVVFEPEFMTIYLLVIIGIFSTTLALSLEKYKFTIAGKAL
                     IGMCFISLFVLFVYIWVGGISSETNELIMSPIGILSVLRFTTHPYIFLILAILLGGEK
                     KPPHVPKPKK"
     gene            complement(3775..>4179)
                     /locus_tag="IBJ56_002570"
     CDS             complement(3775..>4179)
                     /locus_tag="IBJ56_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418811.1"
                     /translation="KSLIEEFQLNYKVISEEELALFGSNFALVFLIHFDEVSLNFVCR
                     DKDNSLVSYDVWSYFLHVFDDKDKENLPKYNSVQERVDISFLILARGLPRHWSSVLNG
                     DDKWLEDYERYELASVPREVIGYLKDSLSLYI"
BASE COUNT         1454 a          862 c          625 g         1238 t
ORIGIN      
        1 tgaaaaagtg actcccatgt tagagcaggc tgaacaagat ttgcaacaaa aaatagaaga
       61 gttagtagga attcagaaaa cgattcaaaa aatcatccat tcgcaaaaaa aatgcgttta
      121 aatgaaatca cttttgtagc taaagacaat cgttatttta aaaaagttcc taaccaaata
      181 attgatcata acactatcaa ctactcccaa gctgcaaaac acaatttacc agatttagag
      241 gaaccttttt acattttctc caaacaagac actggagcaa tctgccttaa aaccattaaa
      301 aaaagaagtg attatacttt tccagctgtc gaatatgctt gtaaatcttt tattgctaaa
      361 gatgaagcaa ctgttgaagc gcaaatccaa ctatttttgg aagaattaaa atatcctaga
      421 acaagcatga tattatacga aaacatctat ccttcactcg cctatccgga cgcaatggtt
      481 tacacaatgg aagtgccgct ggaagtgccg ctatgaccct ttctattaaa agcatcgatt
      541 catttgaaaa agattgcatc attgaagaaa tagcgtcttt agttttcgca gggttcaaat
      601 caaagttcac aaaaatgcta ttcaaagaaa cagaagcaca tgacattata tatgcttttt
      661 gccattacat ttatacagaa aaaggcgaaa acctactaat tgcaatacaa gatgagctag
      721 tttgcggttg catgtttgta acgggcaaga gtgactcaca tcaaaagcta tatcaaaacc
      781 taagaaaatt tttaccattt tcacagtgcc tcaaattaat tttcttactc agtcttctat
      841 cacacaaacc tgttcaaaat gaacgatata ttgactttat aaccgtttcg ccaaattttc
      901 gtggtcaagg tattggaaaa acgctaattt ctcattgcct agaaaccttt catgatgaaa
      961 agattactct atacgttgcc aagaacaata atcgtgccta caagctgtat agaaatttag
     1021 gcttccaagt gattcaaaaa gaaaatagca cattgatggg agtactcacc ggtatcaaag
     1081 aatggcgaaa aatggagtgg atacaatgaa acgttggaaa aaaataacta tcgtaatgag
     1141 cgcaatcatc gtcatattag tagcgattct tttcatcgga aataatttcg aaatgaacga
     1201 aacaagagtc acaatcccaa ctactggtgg aaaactttct gcggtcgtga caactccaaa
     1261 acacgagaaa ccaaaaggca ttattgtgtt tgttcatggt gacggggcac aagaagcaac
     1321 tcaaaacggt ggctatagac cgctaatgga acgcttttcc aaacaaggat atatatctgt
     1381 ttcttgggat aaattaggcg ttggtaactc ctcaggcaat tggctaaatc agtccatgga
     1441 agaccgcgca aacgaagtca accaagttat tgagtggatg aaagtgaagt atcctgatag
     1501 caccaccaaa atcggcttat ggggcgctag tcaagccggc tgggtgatcc caaaagcaat
     1561 gaatgcaaat aatgagattg ctttctcaat ccttgccgca cctgctatta actggatgcg
     1621 tcaaggagaa tacaacactg gctggcaagc gaaagacgct ggtaaaacaa cgaaagaagt
     1681 caagcaagca caacaaaatt tcctcaccga cagcgccctt atttctaaaa acaaaaccta
     1741 cgaaagctac aaacaaaatg gcggtaaaga aaaaatgacc ccagatcgct acaactatat
     1801 ccgcaaaaac atgaaccaag atgccaccct agacctttca aaagtaaaag caaaaatcta
     1861 cctcgtctta gctgaaaaag ataaaaatgt tgattcagca gaaacaaaag aagtttacac
     1921 ccaacaaatc aaaaaagaaa acctagaaac ccaaaccatc ccaaatgtct cgcatcaaat
     1981 gattaatcct gccatcgcta attcagaact actcatcaat attgttggct taatggttcc
     2041 aaaatatttt ctagtagacg atgcttactt agattactgc gtgcaagtag tttctaaaca
     2101 ataaaaagaa gacccaatta atggtcttct tttcttatag aataattttt aaaatacgcc
     2161 tgttgccaag cttgcgtttt tctcgctgtt ttatttaaat cctgacacca cgttggataa
     2221 aatctagcag ccatttttcc aataccagct tcactagtta aaattccctt ttcaattaaa
     2281 cactgccttg gaaaaacaaa tataccgttc aaatcatcat caataacaac aatacataaa
     2341 aaatcagcgc tatcattctc atcaaaagga caattcttac caaattcatc tttctcccaa
     2401 aaagcaacaa agtaccctgc ctttttatcc gttttcttcg ccaaacgcgt acgagtcatt
     2461 gtcccatctt tagccgtttt tacaatcatt cctcgatatt ctttgttttg tagttcttcc
     2521 cgaattattt caagttcacc aagttcgctt tgtaacagct gttcatactc cattaactct
     2581 ctcccttcag ttgcaaatga agaattggat aaggcttccc aaaaccgtcc gcgtcacttc
     2641 tagaagaaac cacaaatcca tgcttcaaat aaaatctcgt ggcattttca ttttgttcat
     2701 tcacatccac caaatttatc tgcttatttt ctattagcca actaagaatt tgactcccat
     2761 aaccattacc cgtagctatc ggctctaaaa acaacatatc tagttcccgc tcgctcgtcc
     2821 cactaaaacc aacaacctct tcaccagcga accataagaa cagttccaca ttatctagaa
     2881 acaaaggaat ttgttctttg taaaactgcc tatcttccgc agctaaaaaa tcatgcgttg
     2941 caataactga cttttcccaa atcgctaaaa ttgtctggta atcttgtttt ttcgctcgtt
     3001 tatttataag tatcattttt tcaacttcct atttattttt taggtttggg cacatgtggc
     3061 ggtttctttt ccccgccgag caagattgca agtattaaga aaatatatgg atgtgtagta
     3121 aagcgcaata cactgagaat cccaataggg ctcatgatta attcgtttgt ttctgaagaa
     3181 atccccccca cccatatata aacaaataat acgaacaggg atataaagca catcccaatc
     3241 aacgctttcc ccgctatagt aaacttatat ttttcaagcg ataaagccag tgttgtagaa
     3301 aatataccga tgataacaag taaataaatt gtcataaact ctggttcaaa tacaactgga
     3361 aattcgttca taaagttacg ctcctttaaa attattgtgc tggattacac tgctgtttat
     3421 acgttgttgt tctaaataca aaaatccctt gatgtttttt gaattattaa aggttaaaag
     3481 cataaacaca aagaaagtga aatcaatttt acccttttgt gtatgattga ttttcttttc
     3541 tcctctcgta tttgaatctc ccatgttttc atagtacatt attatttgtg aaataaaaag
     3601 agattttagg gagcttttct aattaataag ttgtgacatc cgttattttt atttcgatta
     3661 atttaaaatt attatggagt agaaattcac ttttttaagg attatttctt ttgagttacc
     3721 gtctattttc atggttgaac tcctctttgc tgttacattc tcaacatttc ttggttaaat
     3781 atataaactc aaactatcct ttaagtaccc gattacttct ctaggaacac tggctaattc
     3841 atatcgctca taatcttcca accacttatc atctccatta agcacactac tccaatgacg
     3901 cggaagacct cttgcaagta ttaaaaacga aatatcaacc cgttcctgca cagaattata
     3961 ttttggcaaa ttctccttat ctttatcatc aaagacatgc aaaaaataag accatacatc
     4021 ataactgaca agcgaattat ctttatcacg gcatacaaaa ttcaaagaaa cttcatcaaa
     4081 atgaatcaaa aaaacaagcg caaaatttga accaaaaagt gctagctcct cttcagatat
     4141 aactttataa tttaactgga attcttctat taatgattt
//
LOCUS       DABQVC010000217         4166 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.217,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000217 DABQVC010000000
VERSION     DABQVC010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4166
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.217"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..1560)
                     /locus_tag="IBJ56_002571"
     CDS             complement(<1..1560)
                     /locus_tag="IBJ56_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HAM3418812.1"
                     /translation="MKEWMKQNWQFITTGISGILIVIGCLVGSDVGDFWTAVIFLSAF
                     VIGGFEQAKEGIQATIKTKKLNVELLMILAATGASIIGYWFEGAILIFIFSVSGALET
                     YTTNKSKREITKLMAFQPERAFRLLPNGDLEEVAAKELQLDDMVFVRPGESVPIDGVI
                     VRGSTTLNEAAINGESVPATKTVGADVFGGTVNVSSAITVKVTQTFDNTIFSKIIRLV
                     ESAQSEPSKTARFIERFEDAYVKAVLLFVLVMMFLPHFALGWSWNETFYRAMVLLTVA
                     SPCALVASVTPATLAAISNGARHGILFKGGVHLENLRGVKAVAFDKTGTLTNGTPELT
                     DRLFAENVDKQQVINVVGAMERQSLHPLAAAITQDLEAEITEKLTEIEVTDVAGWGVQ
                     AIYQEENWQVGKAGFVGEEAAAAFSNGAFERLAGEGKTIVYVAKDGVIQAMFALKDTC
                     RPEAIRTIKALQAKGIKTIMVTGDNEQTGAAIQAELGMDYVVSGCLPEKKVDVLKELS
                     VTYGSVAMVGDG"
     gene            complement(1826..2743)
                     /locus_tag="IBJ56_002572"
     CDS             complement(1826..2743)
                     /locus_tag="IBJ56_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HAM3418813.1"
                     /translation="MKRITIGNSALTASEISLGCMRMADLSKEDANKVINTALENGID
                     FFDHADIYGGGKSEEVFADAIDMNATIREKMILQSKCGIRQGFFDFSKEHIIASVEGS
                     LKRLKTDYLDTLLLHRPDTLFEPEEVAAAFTELEKSGKVRHFGVSNQNPGQIELLKKY
                     VDQELIANQLQFSIMHTGMIDTGFNVNMTIDPSLDRDGGILEYSRLNNMTIQAWSPFQ
                     YGFFEGVFLDNDKFPELNKVIDKIAADKGVTNSAIAVAWIQRHPASFQTVVGTMNPGR
                     IADIAKASDVTLSREEWYEIYRAAGNQLP"
     gene            complement(2807..3340)
                     /locus_tag="IBJ56_002573"
     CDS             complement(2807..3340)
                     /locus_tag="IBJ56_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HAM3418814.1"
                     /translation="MERKLIQEINLLENKKLVMNLNIVAIAIVLILTVLGIVFSGGFA
                     ITNGFMGIIWMFGGYAVAIVIHEAVHGIFFKAFRPEAKVKFGFKNGMAYAGSPGAFYT
                     KAQFFIISIAPFIVLTGLFIFLRFLGVNEAVLYLIFALHTSGCVGDFYYCILLINQPA
                     GIVVEDTDKGISFYSEG"
     gene            complement(3880..4065)
                     /locus_tag="IBJ56_002574"
     CDS             complement(3880..4065)
                     /locus_tag="IBJ56_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418815.1"
                     /translation="MKKVKMEKWLIGVYALVVLMCIIIYFATESIILLLLGFIALLGT
                     GFQTLRYRNAKKSIKAK"
BASE COUNT         1307 a          958 c          614 g         1287 t
ORIGIN      
        1 tccatcacca accattgcca cactgccata agtaaccgac aattctttta acacatccac
       61 ttttttctca ggtaaacaac cggaaacaac atagtccatt ccgagttcgg cttgaatcgc
      121 tgcacctgtt tgttcgttat ctcccgtcac cattatggtt ttaatccctt ttgcttgaag
      181 tgccttaatc gtacgaatgg cttcaggccg gcatgtatct ttaagggcaa acatagcctg
      241 aatcacgccg tctttagcta cataaacaat cgttttccct tcacccgcaa gtcgctcaaa
      301 tgcaccattt gaaaatgctg ccgctgcttc ttccccaaca aacccagctt tcccaacttg
      361 ccaattttcc tcttgataaa tcgcttgaac tccccatcca gctacatccg tcacttcaat
      421 ttctgttaac ttttcggtga tttctgcctc taggtcttgc gttattgccg cagctaacgg
      481 atgtaaagat tgtcgctcca tcgctccaac tacattgatt acttgttgct tatcgacatt
      541 ttcagcaaat aaccgatctg tcagttctgg tgtaccattt gtcagcgtcc cagttttatc
      601 aaatgcaaca gcttttacac cgcgcaaatt ttccaagtgt acgccgcctt taaacaaaat
      661 cccgtgacgt gcaccgttcg aaattgccgc taaagtcgca ggcgttaccg aagccactag
      721 cgcacaaggg gaagcaaccg ttagcaaaac catcgcacga taaaatgttt cattccaaga
      781 ccaccctaaa gcaaaatgag gcaagaacat cattactaac acaaataata gaactgcttt
      841 tacatacgca tcctcaaatc gttcaataaa gcgagcggtt ttcgaaggtt cactttgagc
      901 cgattctact aaacgaataa tcttactaaa aatcgtatta tcaaatgttt gcgttacttt
      961 gaccgtgatg gcgctgctta cattgaccgt cccgccaaac acatccgcac caactgtttt
     1021 cgtcgctggc actgattccc cattaatggc tgcttcattt aacgtggttg accctcgaac
     1081 aatgactcca tcgattggaa cactttctcc tggccgaacg aataccatat catccagttg
     1141 taactccttt gcagccactt cctctaaatc tccattagga agcaaacgaa aggcgcgttc
     1201 tggttgaaat gccattaatt tcgtgatttc gcgcttactt ttattggtcg tatacgtttc
     1261 taaagcgcca ctaaccgaga aaataaaaat aagtatggcc ccttcaaacc aataaccaat
     1321 aatagatgca ccggtagccg ctaaaatcat taagagctcc acattcaact ttttcgtttt
     1381 gatagtcgct tgaatgcctt ctttagcttg ctcaaaacca ccgataacaa aggcacttag
     1441 gaaaataacc gctgtccaaa agtcgccaac atcactgccg accaaacaac ctatcacaat
     1501 caaaatcccg ctaatacccg tcgtaataaa ttgccaattc tgcttcatcc attccttcat
     1561 tatgctcatc ctctccaaat gataatgatt cccattaccc taaaaaacac aaaaatctgc
     1621 tttcgcaacc gcgaaaaaca gattaaacaa taattattat aaataaatat aaaaatatgc
     1681 gtccttaact cacttgttat tatagcactt tcctaatgac atatcaaact aattgataaa
     1741 attatattct aattgagaat gaatttcact atcactccaa tacataaaaa aacacttgag
     1801 cataatgccc aagtgtctga tctcattaag gtaattggtt gccagccgca cggtaaattt
     1861 cataccattc ttcgcgacta agtgttacgt cagaagcttt tgcaatatca gcaattcttc
     1921 ccggattcat tgtaccaacc actgtttgga agctcgctgg gtggcgctga atccacgcaa
     1981 ccgctatagc tgagttagtt acacctttgt cagcagcaat tttgtcgatt actttgttca
     2041 attcagggaa tttatcgtta tccaagaaaa ctccttcaaa gaaaccatat tggaacgggg
     2101 accatgcttg gattgtcatg ttgtttaagc gactatattc caaaataccg ccgtcacgat
     2161 caagtgaagg atcaatcgtc atattcacat taaaaccagt atcaatcata cccgtatgca
     2221 taatgctaaa ttgcagttgg ttggcgatta attcttggtc tacatatttt ttcagtagtt
     2281 caatttgacc tggattttga ttacttacgc cgaaatgacg cacttttcca cttttctcta
     2341 attctgtgaa agctgccgct acttcttctg gttcgaaaag tgtatccgga cggtgaagta
     2401 aaagtgtatc taaatagtct gttttcaggc gttttaagct accttccaca gaagcaataa
     2461 tgtgctcttt tgaaaaatca aagaatcctt gacgaattcc gcattttgat tgaagaatca
     2521 ttttttcacg aatagttgca ttcatatcaa ttgcatcagc aaaaacttcc tctgatttac
     2581 cgccgccata aatatccgcg tggtcaaaaa aatcaatgcc attttcaagt gctgtattaa
     2641 tcactttgtt ggcatcctct ttactaagat ccgccattct catacatcct agcgaaattt
     2701 ctgaagctgt taaagcgcta tttccaattg ttattcgttt caaactaagc acctctttct
     2761 aaaagtatat ccttattcta acactttgtt gtaatcgtta ccaagcttaa ccttctgaat
     2821 aaaaactaat tcccttatcc gtgtcctcta caacgattcc agccggttga ttaatcaaaa
     2881 gaatgcaata gtaaaaatcc ccgacacaac cagatgtatg taatgcaaaa atcaaataaa
     2941 gaaccgcttc attcacccca agaaatcgca gaaaaatgaa caaacccgta agaacgataa
     3001 atggcgcaat cgaaataata aagaattgtg ctttcgtata aaatgctccg gggcttccag
     3061 cataagccat cccattttta aaaccaaatt tcacttttgc ttctggacga aatgctttaa
     3121 agaaaatccc gtgtacggct tcgtgaataa caattgctac tgcataacca ccaaacatcc
     3181 aaataatccc cataaaacca ttcgtaattg caaaaccacc tgaaaaaaca attcctaaaa
     3241 cagttaatat gagtacaata gcaatcgcaa caatattcaa attcataacc aattttttat
     3301 tttctagtaa attaatttcc tgaatcaatt ttctttccat ccagaccgct ccttttataa
     3361 aaacgctgat attttcgtta ttacaattat acaatacttc ttgtcagcat tctatgtcat
     3421 agtggggaaa tacccaagtc cggctgaagg ggacgaaaag ttgttctttt gtcggtttct
     3481 ataaattttt acaagccttt gaatcgttaa agctatatac tctcatgtca caaccttaca
     3541 aacaacaata tcttctatat tatatcaatt aatcgttcgt caaatcactt taattaacct
     3601 atgtttcttt cgtgatctaa attaacagga actacatact tgtattgcat atgatgattg
     3661 ttctttaagt ataatgtttc tattgaccaa ttacgtttaa gtacatctgc taaaagatat
     3721 agaatgttct ataatgtaat caattatatt atacatgttt gtcatctctt aataacatct
     3781 tacgaacaaa cgcactcaaa accaagtggg aatgattaaa agaattctac acataaataa
     3841 aaagtaggca ggataatttt atcccaacct acattttgtt tatttagctt tgattgattt
     3901 ctttgcattt cggtatctta aagtttggaa tcctgttcca agaagagcta tgaaccctag
     3961 taacaataag attatacttt ctgttgcaaa gtaaataata atacacatta atactacaag
     4021 ggcatataca ccaatgagcc acttttccat tttcactttt ttcataacct aagcctccaa
     4081 tactatatca attttcaacc gtacggacga tatttatgtg taaatgtctt aagcagtcca
     4141 gtatagttag attttttata aataga
//
LOCUS       DABQVC010000218         4161 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.218,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000218 DABQVC010000000
VERSION     DABQVC010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.218"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..297
                     /locus_tag="IBJ56_002575"
     CDS             <1..297
                     /locus_tag="IBJ56_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvyl-transferase"
                     /protein_id="HAM3418816.1"
                     /translation="STRYRVNLVNNQLTQLKKTTSEQNKKYQQKITETQEKNQQLEKQ
                     LTDTKQKLQLTINKNHELTNKIRHYQGTLNRKSVKTTLKVANSLANLKKKVSRS"
     gene            complement(338..688)
                     /locus_tag="IBJ56_002576"
     CDS             complement(338..688)
                     /locus_tag="IBJ56_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2200 domain-containing protein"
                     /protein_id="HAM3418817.1"
                     /translation="MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLTGYDQ
                     DSLQQAIDQAIDFETFFAEAPKMNPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVD
                     ELAKGKKMEKILRK"
     gene            complement(822..1211)
                     /locus_tag="IBJ56_002577"
     CDS             complement(822..1211)
                     /locus_tag="IBJ56_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF956 family protein"
                     /protein_id="HAM3418818.1"
                     /translation="MVQSINTKVDLTIDATAYTGLTDYGKIMIGDKGFEFFNSRDVRK
                     FVQIPWEEVDQVIVSVMLKGKWIPRYAIKTKRNGTYTFASKRPKEVLRKIRVYVDPAN
                     MVSSLSFFDVMKRSFRSIFSKKKNKNK"
     gene            complement(1338..2249)
                     /locus_tag="IBJ56_002578"
     CDS             complement(1338..2249)
                     /locus_tag="IBJ56_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HAM3418819.1"
                     /translation="MAEKIELSKRDRLRVAWRSTFIQGSWNYERMQNGGWAFSMIPAI
                     KKLYKTKEDRSQALKRHLEFFNTHPYIASPILGVTLALEEERANGAEVDDVAIQGVKV
                     GMMGPLAGVGDPVFWFTIRPMLGALGASLALSGNILGPILFFVAWNVIRWGFMWYTQE
                     FGYKAGSKITDDLSGGLLQDITKGASILGMFVLAALVQRWVNIQFAPIISKVKLDEGA
                     YIDWSHLPQGAQGIKTALEQQQAGLALSEIKVTTLQNNLDNLIPGLAAVALTFLCMWL
                     LKKKISPIIIILGLFVVGIVGHLIGLL"
     gene            complement(2271..3077)
                     /locus_tag="IBJ56_002579"
     CDS             complement(2271..3077)
                     /locus_tag="IBJ56_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HAM3418820.1"
                     /translation="MSVISIILVVLIAFLAGIEGILDEFQFHQPLIACTLIGLVTGNL
                     TACIILGGTLQMIALGWANIGAAVAPDAALASVASAIILVLGGQGVAGIPSAIAIAIP
                     LAVAGLFLTMIVRTLAVPIVHLMDRAAEKGNIRSVEWLHISAICMQGIRIAIPAAALL
                     FIPADSVQSFLEAMPAWLTDGMAIGGGMVVAVGYALVINMMATKEVWPFFVIGFVVAA
                     ISQLTLIAIGALGVALALIYLNLSKMGGGNSNGGGGGNSRDPLGDILNDY"
     gene            complement(3101..4066)
                     /gene="manX"
                     /locus_tag="IBJ56_002580"
     CDS             complement(3101..4066)
                     /gene="manX"
                     /locus_tag="IBJ56_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HAM3418821.1"
                     /translation="MVGIILATHGEFAEGILQSGTMIFGEQENVKAITLMPSEGPEDI
                     KAKMEAAIASFDSQDEVLFLVDLWGGTPFNQANGLYELHKDKWAIVAGLNLPMLIEAF
                     SSRFTMESAHEIAANILAPAQEGVRVKPEELQPQVTATEQPQAEIAAVGDGKIEFVLT
                     RVDSRLLHGQVATAWTKATHPTRIIVVSDAVAKDDLRKKLIEQAAPPGVKANVIPVQK
                     MIEISKDPRFGNTKALLLFENPQDVLRAIEGGVEIEQVNVGSMAHSVGKVVVSKVLSM
                     GKDDVETFEKLKEKGVKFDVRKVPNDSSANMEDIIKKAKHELKTQ"
BASE COUNT         1207 a          877 c          746 g         1331 t
ORIGIN      
        1 agcacaagat accgcgtcaa tctcgtaaat aatcaactta cccaactgaa aaaaacaact
       61 tctgaacaaa acaaaaaata ccaacaaaaa attactgaaa cacaagaaaa aaatcagcaa
      121 ttagaaaaac aactgacaga tactaaacaa aaattacagt tgacgattaa taaaaatcac
      181 gaactaacta ataaaatcag acattatcaa ggaacattaa accgaaaatc tgtaaaaact
      241 actttaaaag tagcgaactc tctagcaaat ttaaaaaaga aagtctccag aagctaagca
      301 ataaaaaagc agccatccaa atccggctgc ttttttctta tttccttaaa atcttctcca
      361 tttttttccc ttttgcgagt tcatccacca atttatccaa ataacgaatt tgttgcatta
      421 gtttatcttc aatttcttct actcggtagc cgcaaataac tccggtgatt aaggaagcat
      481 tcggattcat ttttggtgct tcggcaaaga aggtctcgaa atcaattgct tggtcgattg
      541 cttgttgcaa agaatcttga tcatagccgg ttagccaaaa aataatttca tccacttctt
      601 cttttgtgcg gtcttttttc tccgcttttt gtatgtaaag agggtataca ctagcgaatg
      661 acatcgtgta gattcttggt tttttcatgt tggtgttcct ccttcgttta cttttgattt
      721 cactttctat tgtaccaaaa tgtgctgttt gttcaattat tatgtacgaa aaaaagcatc
      781 aacagacata aatccattga agcttttcgg tataaatcgg cttatttatt tttgtttttc
      841 ttcttgctaa atatcgaccg aaacgagcgc ttcataacat caaagaaact gagcgagctc
      901 accatattgg ctgggtcgac ataaactcgt attttacgta aaacttcttt aggtcgttta
      961 gaagcaaatg tgtatgtgcc gttgcgcttt gttttaatgg cgtagcgagg gatccactta
     1021 ccttttagca taacggatac gataacttga tctacttctt cccaagggat ttggacgaat
     1081 ttacgcacat cacgtgagtt aaaaaattca aaacctttgt cgccaatcat aattttcccg
     1141 taatctgtaa gtccagtata cgcggtggca tctattgtta agtctacctt tgtattaatc
     1201 gattgaacca actgtattcg ctccatttct tttcgcttgt tttgtttatt ataccgtatt
     1261 cgtttatctg tgtcatatat ctaaacgaaa agaggctcgg tgaatattgc accagcctct
     1321 tttcgatcag cttattttta cagaagcccg attaagtgac caactatacc aactacgaat
     1381 agacctagaa tgatgataat tgggctgatt tttttcttaa gtaaccacat acataggaat
     1441 gtaagagcta ctgctgcaag tcctgggatt aagttatcca agttattttg caaggttgtt
     1501 actttaattt cagaaagagc taaacctgct tgttgttgtt ctaaagcagt tttgatacct
     1561 tgagcgcctt gtggaagatg actccaatca atatacgcac cttcatcaag tttaactttc
     1621 gagataattg gcgcaaactg gatatttacc catctctgca ccaaggcggc gaggacgaac
     1681 atcccgagta tcgaagcacc ttttgtaatg tcttgtagta atccaccaga aaggtcatca
     1741 gtaattttcg aaccagcttt gtagccgaat tcttgtgtat accacatgaa gccccaacgg
     1801 attacgttcc aagcaacgaa gaataagatt ggtccaagaa tgtttccact caaggcaaga
     1861 gaagcaccta atgctcctaa cattggacga attgtaaacc agaatactgg atcaccaaca
     1921 ccagctagag gtcccatcat accaacttta accccttgaa ttgctacatc atcaacttct
     1981 gctccattgg cacgttcttc ttcaagagca agtgttaccc ctagaattgg agatgcaata
     2041 tatggatgtg tattaaagaa ttctaagtga cgttttagag cttgcgaacg atcttcttta
     2101 gttttatata attttttaat agcgggaatc atagagaatg cccagccacc attttgcata
     2161 cgttcgtagt tccatgaacc ttgaatgaac gtagagcgcc atgctacgcg tagacggtct
     2221 ctctttgata attcgatttt ttctgccatt ctattctcct ccttttttta ttaatagtcg
     2281 tttaatatat cgcccagtgg atcgcgagag tttccgcctc caccgccgtt tgagttaccg
     2341 ccacccattt tagataggtt aaggtaaata agagcaagtg caacacctag agcaccaatt
     2401 gcgataagtg taagttgaga aattgcagct actacgaaac cgattacgaa gaacggccat
     2461 acttctttag tagccatcat gttgataact agtgcataac caacggcaac taccattcct
     2521 ccaccgatag ccataccatc tgttaaccaa gctggcattg cttctaagaa agattgaacg
     2581 ctgtctgctg gaatgaataa aagtgctgct gcaggaatcg cgatacgaat accttgcata
     2641 caaattgctg aaatatgtaa ccactctacg ctgcgtatat tccctttttc agcggctctg
     2701 tccatcaagt gaacaattgg aactgccaat gtacgaacga tcattgttaa gaaaagacct
     2761 gctactgcta gtggaattgc aatcgcgatt gcagatggaa tacctgctac cccttgtcca
     2821 cctaatacta atataattgc tgaagctact gaggcaagcg cggcatctgg tgctacggct
     2881 gctccgatgt ttgcccatcc aagtgcgatc atttgtagag ttccgccaag gatgatacat
     2941 gctgttaagt tacctgttac gagaccaatt aatgtacatg cgattaatgg ctgatggaac
     3001 tgaaattcat ctagaattcc ttcaatacct gctaaaaatg caataagtac tactaaaatt
     3061 attgatatga cagacataat aaacctccta ttttaatttt ttattgtgtc tttagttcgt
     3121 gttttgcttt tttgatgatg tcttccatgt ttgcgcttga gtcattaggg actttacgca
     3181 catcgaattt aacgcctttt tcttttagtt tctcaaaggt ttcaacatca tctttcccca
     3241 tggaaagtac tttgctaaca acaactttac ctacagagtg agccatggaa ccaacgttta
     3301 cttgttcgat ttctacgcca ccttcaattg cgcgtaaaac atcttgagga ttttcgaata
     3361 ataaaagtgc ttttgtattg ccgaaacgcg gatcttttga aatctcaatc attttttgga
     3421 ctgggataac gttagctttt actcctggtg gtgctgcttg ttcgattaat tttttacgaa
     3481 ggtcgtcttt tgcaactgca tctgaaacga cgataattct tgttgggtgt gttgcttttg
     3541 tccatgcagt ggctacttga ccatgcaaga gacgtgaatc aacacgagtt aaaacgaatt
     3601 cgattttgcc atcaccaact gcagcgattt ctgcttgtgg ctgttcagta gctgttactt
     3661 gcggctgtag ttcttctggt ttaacgcgga caccttcttg agctggtgca agaatatttg
     3721 ctgcgatttc gtgtgcgctt tccattgtaa aacgtgatga gaaagcttca atcagcattg
     3781 gcaaattaag tcctgctacg attgcccact tatctttatg tagttcataa agaccgtttg
     3841 cttgattgaa tggtgtgcct ccccaaagat ccactaagaa taaaacttca tcttggctat
     3901 caaaggatgc aattgcagct tccattttag ctttgatgtc ttctggacct tcgcttggca
     3961 tcaaagtgat tgctttaacg ttttcttgct cgccgaaaat cattgttccg gactgcaaaa
     4021 taccttcagc aaattcaccg tgagttgcga ggataattcc taccatcttt ttccctccta
     4081 atataattca tttattttgc tacccgctat atttattgca agttctgtgc caatttatag
     4141 tattactctc aaaaccctta t
//
LOCUS       DABQVC010000219         4157 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.219,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000219 DABQVC010000000
VERSION     DABQVC010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4157
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.219"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(97..1935)
                     /gene="typA"
                     /locus_tag="IBJ56_002581"
     CDS             complement(97..1935)
                     /gene="typA"
                     /locus_tag="IBJ56_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HAM3418822.1"
                     /translation="MNLRNDIRNVAIIAHVDHGKTTLVDQLLRQSGTFRDNETVAERA
                     MDNNDLERERGITILAKNTAIKYEDTRVNIMDTPGHADFGGEVERIMKMVDGVLLVVD
                     AYEGTMPQTRFVLKKALEQNLTPIVVVNKIDRDFARPEEVVDEVLELFIELGANDDQL
                     EFPVVYASAINGTSSYDSDPAEQKETMKPLLDTIIEHIPAPVDNSDEPLQFQVSLLDY
                     NDYVGRIGIGRVFRGTMHVGQTVALIKLDGTVKQFRVTKMFGFFGLKRDEIKEAKAGD
                     LVALAGMEDIFVGETVTPFDHQEALPLLRIDEPTLQMTFVTNNSPFAGREGKHVTSRK
                     IEERLLAELQTDVSLRVEPTASPDAWVVSGRGELHLSILIETMRREGYELQVSKPEVI
                     IREIDGVKCEPVEDVQIDTPEEFMGSVIESISQRKGEMKNMINDGNGQVRLQFMVPAR
                     GLIGYTTDFLSMTRGYGIINHTFDSYQPIQKGRVGGRSRGVLVSMETGKSTTYGTMQV
                     EDRGTIFIEPGTDIYEGMIVGENNREGDIAVNIVKAKQMTNIRSANKDQTNVIKKPRH
                     LSLEESLEFLNEDEYCEVTPESIRLRKKILNKNEREKAAKRSKTAE"
     gene            complement(2127..2900)
                     /locus_tag="IBJ56_002582"
     CDS             complement(2127..2900)
                     /locus_tag="IBJ56_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HAM3418823.1"
                     /translation="MDSEKIDYLARLWIMEAAAKIKQSFKETLDIDVKSGRNDLVTNM
                     DKETEAFFVQQIKDHFPDHRLFGEEGMASDVTDLDGVVWILDPIDGTLNFVEQQRDFA
                     ISLAVYEDGIGQLAYIYDVARDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANL
                     SVTRKFPTMWEAVKASRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVE
                     ELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP"
     gene            3031..3645
                     /locus_tag="IBJ56_002583"
     CDS             3031..3645
                     /locus_tag="IBJ56_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1054 family protein"
                     /protein_id="HAM3418824.1"
                     /translation="MTFKGFSKKDFKTMQIPGLEARMSGIQTDIQPKFRAVGEELTTY
                     LSAKLGDEMFLHIARHQRRSVNPPESTWLAICHDKRGYKKHPHFQVGLFDNYLFIWLA
                     FIYENEESAKIANRFLKEKKLLADLPDNFAISPDHTEEKTYPVHDGQLKATLERFRDV
                     KKGEFLVGKIYLPDDSHLSPGKDFIKEAEMVLDELIPLYKASLQ"
     gene            3846..>4157
                     /locus_tag="IBJ56_002584"
     CDS             3846..>4157
                     /locus_tag="IBJ56_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HAM3418825.1"
                     /translation="MHQIFKSDENGKLIELEEVTRNCWINIVAPTSEEINKIADNYEI
                     PLEFLEDPLDKDESARIERDDDSDSVLIVCDFPVVDEDDIHYASFETIPMGIIITKDY
                     FI"
BASE COUNT         1224 a          823 c          760 g         1350 t
ORIGIN      
        1 attccctttt ccagcaaatt aaagcataaa aaaaccaaat agtttttaaa ggatattcct
       61 accacttaaa aaccatttgg ccgattcaaa tatatattat tcagcagttt ttgaacgttt
      121 tgctgctttt tcacgttcgt ttttgtttag gattttttta cgtaaacgga tggattctgg
      181 tgttacttca cagtattcat cttcgtttag gaattctaat gattcttcta gtgataaatg
      241 acgaggtttt ttgattacgt ttgtttggtc tttgttagca gaacgaatgt tagtcatttg
      301 ttttgctttc acaatgttta cagcgatatc gccttcacga ttgttttccc caacgatcat
      361 accttcgtaa atatccgtac caggttctat aaaaatagta ccacggtctt ctacttgcat
      421 tgttccgtaa gtagtagatt tacctgtttc catggataca agaacaccac gactacgtcc
      481 gccaacgcgt cctttttgga ttggttggta gctatcgaat gtgtggttga taataccata
      541 accacgagtc attgaaagga aatcagttgt ataaccgatt aagccacgag ctggaaccat
      601 gaattgtaaa cgaacttggc cgttaccgtc gttaatcatg tttttcattt cgcctttacg
      661 ttggctaata gattcaataa cagaacccat gaattcttct ggagtatcaa tttgaacatc
      721 ttctactggt tcacatttca cgccatcaat ttcacggatg attacttctg gtttagaaac
      781 ttgtaattca taaccttcgc gacgcattgt ttcgatcaga atggataaat gaagctcacc
      841 acgaccagaa actacccaag cgtctggaga agctgttggt tcaacgcgta aagatacatc
      901 cgtttgaagt tctgcaagta agcgttcttc aattttacgg cttgttacgt gtttaccttc
      961 acggcctgcg aaaggactgt tatttgtaac aaaagtcatt tgcaatgttg gctcatcaat
     1021 acgtaaaagt ggaagtgctt cttggtgatc gaaaggtgtt actgtttcac caacgaaaat
     1081 gtcttccatt cccgcaagtg ctactaagtc acccgctttt gcttctttaa tttcgtcacg
     1141 ttttagtccg aagaaaccga acattttcgt tacacggaat tgttttactg tgccatcaag
     1201 tttaattaaa gcaactgttt gtcccacgtg cattgttcca cggaatacgc ggccaatacc
     1261 gatacgacca acatagtcat tataatcaag taatgatact tggaattgta atggttcgtc
     1321 gctattatca actggagccg ggatatgttc gataattgtg tctaaaagtg gtttcattgt
     1381 ttctttttgt tctgctggat cagaatcata gcttgaagtt ccgttgattg cagaagcata
     1441 aacaactggg aattctaatt gatcgtcgtt cgcacctaat tcgatgaata attctaatac
     1501 ttcatcaaca acttcttctg ggcgagcaaa atcacggtca attttgttta ctacaacgat
     1561 cggtgttaag ttttgttcta gtgctttttt tagtacaaaa cgtgtttgag gcatagtacc
     1621 ttcatacgcg tccactacta aaagaacacc atctaccatt ttcatgatac gttctacttc
     1681 tccaccgaaa tcggcgtgtc caggtgtatc catgatgttt acacgtgtat cttcatactt
     1741 aatcgctgta tttttcgcta aaattgtaat accgcgttct ctttctaaat cattgttgtc
     1801 cattgcgcgt tctgcaactg tttcattgtc gcggaatgtg cctgactggc gtagtaattg
     1861 gtctactaga gttgttttac catggtcaac gtgggcaata attgctacat tacgaatatc
     1921 atttcttaaa ttcaatcttg tttcctccta aattaaaaat ccaaacattt atcgtgaaga
     1981 ttagccaaaa gaaagaggaa aatagattta ttttcctccg tcgctatcgt ctcgtttaaa
     2041 tcaacttacc tattatagca tagctgagcg gatttggcac gatttttatt ttctgaaaac
     2101 aagttttttt atgttgagcg ctttctttaa ggcaggtagt tatctaataa ggtttgatgg
     2161 atttttggcg atgctacaat agaacttcct ttttctaaca tattgatttt ttcaccatta
     2221 atccgtgtca ctttcccgcc taattcttcg acgataattt ttccagcagc tatatcccac
     2281 ggggctaaat tagcagaaag ataggctccc gctcgtccag tagcaacatc catatattcc
     2341 agtgaagctg ctccgtgtaa tcgtaatcct ctagaagctt ttaccgcctc ccacatggtt
     2401 gggaattttc ttgtcacgct caaattagca attaatagcg tatcttttag gtctattgct
     2461 gggtcaagtt tagggatagt tctgccgttt actgtagcac cttttccttt ttctccaaaa
     2521 tacagctcat cgcgtgcaac gtcataaata taagcaagct gccctattcc atcttcataa
     2581 actgcaagtg aaatcgcaaa atcgcgttgc tgttcaacaa aattcaatgt cccgtcaatt
     2641 gggtcaagaa tccaaaccac tccatctaaa tctgttacat ctgacgccat tccttcttca
     2701 ccaaataaac gatggtcagg aaaatggtct ttaatttgtt gaacaaaaaa agcttcggtt
     2761 tctttatcca tattcgtcac taaatcattt cgaccggatt tgacatcaat gtctagtgtt
     2821 tctttgaaag attgtttaat tttcgctgcg gcttccatga tccataacct tgctaaataa
     2881 tctatttttt cgctgtccat aaacacacct cttcgcactc tttttgttta ttttatcaca
     2941 aaaatgaatt atctgaatag aacaagattc tttcacttgg aacttaactt ccgtataatg
     3001 aaactatatg caaaattagg aggaaaacag atgactttta aaggatttag taagaaagat
     3061 tttaaaacaa tgcaaattcc tgggcttgaa gcacgtatga gcggaattca aacggatatc
     3121 caaccaaaat tcagagctgt tggggaagaa ttgactactt atttaagtgc caagcttggc
     3181 gatgaaatgt ttttacatat tgctcgtcac caaagacgtt cagttaaccc acccgaaagc
     3241 acttggctgg ccatttgcca tgataaacgt ggatataaaa agcaccctca tttccaagtg
     3301 ggtctattcg ataattattt attcatttgg ctcgctttta tttatgaaaa tgaagaaagc
     3361 gcgaaaatcg ccaatcgctt cttgaaagaa aagaaattat tggctgattt accggataac
     3421 tttgccattt ctccagatca cacagaggaa aagacgtatc cggtacacga cggacaacta
     3481 aaggccacgc ttgaacgatt ccgtgatgtg aaaaaaggag aattcttagt tgggaaaatt
     3541 tatctaccag atgatagcca tttatcccca gggaaagact tcattaaaga ggcagaaatg
     3601 gtccttgacg agctaattcc gctctataag gcttcccttc aataaaagat gtacaaatga
     3661 ctataatcta ggtataatgg tagagttgtg aattactatg gtttgaagga gttgaggaac
     3721 gtgaaaaagg agcagcaaac agcaagtgac cctggtccac atcgaagtat tcatacaggt
     3781 gatttttcac gggaacgaaa ctctaaccgc gtgaaattta cctgttaaaa aaggaggtaa
     3841 aaagcatgca tcaaattttc aaatcagatg aaaacggcaa attaattgaa ttagaagaag
     3901 tgacacgcaa ttgttggatt aatattgttg cgccaacttc cgaagaaatt aacaaaattg
     3961 ccgataacta cgaaattcca ctagagttct tagaagatcc actagataaa gatgaaagtg
     4021 cccggattga acgcgatgac gactcggatt ctgttttaat cgtttgtgac tttccggtag
     4081 tcgatgaaga tgatattcat tacgcttcat ttgaaaccat accaatgggg ataattatta
     4141 caaaggatta ttttatt
//
LOCUS       DABQVC010000220         4152 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.220,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000220 DABQVC010000000
VERSION     DABQVC010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4152
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.220"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..722
                     /locus_tag="IBJ56_002585"
     CDS             <1..722
                     /locus_tag="IBJ56_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="WecB/TagA/CpsF family glycosyltransferase"
                     /protein_id="HAM3418826.1"
                     /translation="ISILNIPFYNTTQAGFVEELYMAAKNGERRFVVTANPEIVMHAR
                     TDKEFEAILGQADYIVPDGIGIIMASEKLGEPLKERVTGYDTMVGLLNKPLSCYFLGA
                     KPEISEVVEAKVREKFPQAVVCGVHHGYFDVLESEAIAKEILVAQPDVIFVALGSPAQ
                     EKWILSQIANFTKGIFIGVGGSFDVLTDSVKRAPKIWIKLRLEWVYRLLSNPSRWRRF
                     FAIPQFMLVIRKERKRLKKGE"
     gene            723..1847
                     /gene="menC"
                     /locus_tag="IBJ56_002586"
     CDS             723..1847
                     /gene="menC"
                     /locus_tag="IBJ56_002586"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HAM3418827.1"
                     /translation="MYFQEARLIHAELPLIAPFKTSYGELNSKDFYIIELVNEEGIRG
                     YGELEAFPLPDYTEETLGTAISIIKQHLLPILAQKEIRTPEEVNQMFSWIQGNEMAKA
                     AVELAVWDAFAKNEKLSLAKMIGAKKDSITVGVSIGVQHSAEALVQLVSQYMDEGYER
                     VKLKIAPKKDIQFVKAVREKFPNLSLMADANSAYNREDFLLLKELDHFNLEMIEQPFG
                     TKDFVEHAWLQKKLKTRICLDENIRSLDDLKQAHMLGSCQAVNLKLARVGGMSEALKI
                     ARYCSDNNLLVWCGGMLEAGIGRAHNIALAARAEFTFPGDISASNRYFNEDIVSPAFV
                     LNQGKLTVPTGQGVGVALDLDVLQKYTKSTERILLNKGWS"
     gene            1855..2907
                     /locus_tag="IBJ56_002587"
     CDS             1855..2907
                     /locus_tag="IBJ56_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HAM3418828.1"
                     /translation="MLIWSILISFAVGIIMVPIIRKFAFRINAVDTPRERHKHTKTTA
                     TLGGLAIFISFSVGMILAPIDKSGFLPIYFGALIIIATGFIDDIFDLSPKWKMLGQIL
                     AALCVTVWGDITINFINVPFYGQVDFGYFAIPLSIIWIVAIVNALNLIDGLDGLAGGI
                     SIIALMTIAGMALLLKDVFVAPVALILVAAVAAFLIYNFPPASIFMGDTGALFLGYMI
                     AVLSLMGFKNVTFISLLVPLIILGVPLSDTFFAIVRRLKERIPISSADRSHIHHRLMA
                     LGFTEKQTVLLIYCMALLFSMTGFVFSFSTTWGAMLLLLLLIFSIEIIVEFIGLIGED
                     YRPILNLLQKIHRKRK"
     gene            complement(2944..4002)
                     /locus_tag="IBJ56_002588"
     CDS             complement(2944..4002)
                     /locus_tag="IBJ56_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HAM3418829.1"
                     /translation="MSKGTDDSRRSSKKYKRRRKILFWILIPVMCLVLAGVGYGTYLF
                     SKTKLAADNSYDNVRNGKASTLRTNDIEPIKDSFSILIIGVDTSSTRAENGNPRSDSL
                     ILATFNVKDSRIEMTSIPRDSYVHIEDSAKDIDKYTKINAAHAYGGPELTMKTVEEEF
                     KIPIDYYVRFDFDAFLKIVDALDGIDVDVPVDFTEQDSKDNAGAITLKKGPQHLNAEQ
                     ALALARTRHIDSDIERGKRQQLIIKSIVSEATSISSVSKYSDIIEVVGDNMKTNLTFN
                     QMLSIAKYGMTNKIDIKSLNLKGDSNPMDGIYYYKLDESSVQSISNEFADELGIKQPF
                     PGAAPYSDESSNTTSTSN"
BASE COUNT         1227 a          626 c          880 g         1419 t
ORIGIN      
        1 aaatttcaat tttaaatata cctttctata atacgacgca agcaggattt gtggaggagc
       61 tatacatggc cgcgaagaac ggggagcgtc ggtttgttgt aacggctaat ccagaaattg
      121 ttatgcatgc tcgtactgat aaggagttcg aagcaatatt agggcaagct gattatattg
      181 tacccgatgg tattgggatt ataatggctt cagaaaaact tggagagcct ttaaaggaac
      241 gggttactgg ttatgacacg atggttggtc tattaaataa gccactaagt tgttattttt
      301 taggagcaaa accggaaatt agtgaggttg tagaggccaa agtgcgggaa aaatttccac
      361 aggcagttgt ttgtggtgtt catcatggtt actttgatgt attagaaagt gaagcaattg
      421 ctaaggaaat actcgtagca caaccagatg tgatttttgt cgctctaggt tcacctgctc
      481 aagaaaaatg gattttgtct cagattgcta attttactaa aggcattttt attggtgtag
      541 gtggaagttt tgatgtctta acagatagtg taaagcgcgc gccaaaaata tggataaaat
      601 taaggttaga atgggtatac aggctccttt ctaatccttc aagatggaga cgtttttttg
      661 caatacctca atttatgctt gttattagaa aagagcgcaa gcgtttgaaa aagggtgagt
      721 aaatgtattt tcaagaagcg agactaattc atgcagaact tcctcttatt gcaccattta
      781 aaacaagtta tggtgagcta aacagtaaag atttttatat tattgagtta gtgaatgagg
      841 agggtatacg tggttatgga gagttggaag cttttccgtt acctgactat acagaagaga
      901 ctttgggcac tgctatttct attattaaac agcatttgtt gccaatcctt gcgcagaaag
      961 aaatacgaac tcctgaagag gttaaccaga tgtttagctg gattcaagga aatgaaatgg
     1021 cgaaagcggc tgtggagctt gctgtttggg atgcttttgc aaaaaatgag aagctctcat
     1081 tagctaaaat gattggcgca aagaaggact cgattacggt tggcgtgagc attggtgtgc
     1141 agcatagtgc ggaagcgtta gtccagttag ttagtcaata tatggatgaa ggctacgaaa
     1201 gagtgaagtt gaaaatcgca cctaagaaag atattcaatt tgttaaagct gttcgagaaa
     1261 aatttcctaa tctaagcttg atggctgatg cgaattcagc gtataataga gaagatttct
     1321 tgttgttaaa agaattagat cactttaatt tagaaatgat tgagcaacca tttggaacta
     1381 aggattttgt ggagcatgct tggttgcaaa aaaaattaaa aacgcgtatt tgtttggacg
     1441 agaatattag gtcattagat gatttgaaac aggctcatat gttaggaagt tgtcaggcag
     1501 ttaatttaaa attagcgcgc gttggtggta tgtctgaggc tcttaagata gcgaggtatt
     1561 gtagcgataa taatttgctt gtctggtgtg gcggcatgct tgaagctggt ataggtaggg
     1621 ctcacaatat tgcacttgct gctagagcgg aatttacttt cccaggagat atttctgcat
     1681 caaatcgtta ttttaatgaa gatattgttt cgccagcatt tgtattaaat caaggaaaac
     1741 tcactgtgcc aactggtcaa ggggttggag ttgctttaga tttagatgtg ctacaaaaat
     1801 atactaaatc aacagaaaga attttgctaa ataaaggatg gagctgaaaa aatattgcta
     1861 atatggagta tattgattag ctttgcagtt ggtatcatta tggtgccgat aattaggaag
     1921 tttgctttcc gaattaatgc ggttgataca ccgcgtgaaa gacacaaaca tacaaaaact
     1981 acagccactt taggtggatt agctattttt ataagttttt cggtagggat gatcttagcc
     2041 ccaatagata aatcaggttt cttgccaatt tatttcggag cattaattat tattgcgaca
     2101 ggctttatag atgatatatt tgatttatca ccaaaatgga aaatgttagg acagatttta
     2161 gctgctcttt gcgtaactgt ctggggagac attactatta actttattaa cgtcccattc
     2221 tacggacaag tagattttgg gtattttgcg attccattat cgattatttg gattgttgca
     2281 attgtgaatg cgttaaactt aattgatgga ttagatggtc tcgctggtgg tatttctatt
     2341 attgctttaa tgaccattgc aggtatggct ttgcttttga aagatgtttt tgttgcgccg
     2401 gttgcgttaa ttcttgtagc agcagttgcg gctttcttga tttataattt cccgcctgct
     2461 agtattttta tgggagacac tggagcgtta ttccttggtt atatgattgc tgttttatca
     2521 cttatgggtt ttaaaaacgt tactttcatc tcattgttag taccacttat tattttaggt
     2581 gtacctttgt cagatacttt ttttgctatt gtaagaagac taaaagagcg gataccgata
     2641 tcttcagcgg atagatctca tattcaccat aggctgatgg cgctaggatt tacagagaaa
     2701 cagacggtgt tactaatcta ctgtatggca ttactattct ctatgacggg cttcgtattt
     2761 tcgttttcca ctacttgggg agcaatgtta ttactgttat tattaatttt tagtattgag
     2821 attattgttg aatttattgg gttaattggt gaggattacc gaccaatctt aaatttactt
     2881 caaaaaatac atcgaaaacg aaaataaaaa gaccaacaac tatttattag ttgttggtct
     2941 tttttaatta gaagtgctag ttgtgttaga actttcgtct gaatacggtg ctgcaccagg
     3001 gaatggttgt ttaattccaa gttcatcagc aaattcattc gaaatacttt gcacagagct
     3061 ttcatcaagt ttgtagtaat aaataccgtc cattgggttg ctatcccctt ttaagttaag
     3121 ggatttaata tcaattttat ttgtcattcc atattttgcg atagaaagca tttgattgaa
     3181 agttaagttg gttttcatgt tatctccaac aacttcaatg atatcggaat atttgcttac
     3241 agaagaaatg gatgttgctt cgcttacaat agatttaatg attagttgtt gacgtttgcc
     3301 acgttcgata tcactatcga tgtgtcgtgt acgagctagt gctaaagctt gctcagcgtt
     3361 aaggtgttga ggaccttttt ttagagtgat tgcaccggcg ttgtctttag aatcttgctc
     3421 agtgaagtcc actggaacat ctacatcaat tccgtctaaa gcatccacaa tttttaagaa
     3481 tgcatcaaag tcaaaacgaa cataataatc aattggaatc ttaaattctt cttctacggt
     3541 tttcattgta agttctggac caccgtaagc atgagctgcg ttaattttcg tgtatttatc
     3601 aatgtctttg gcggaatctt caatatgaac ataagaatca cgcggaatac tagtcatttc
     3661 tatgcgtgaa tctttgacat taaatgttgc taagattagt gaatcgcttc gagggttacc
     3721 attttcggcc cgtgtagagc tggtatcaac accaataatt aaaatagaaa aactatcttt
     3781 tataggttca atgtcatttg ttcgaagtgt agaggctttt ccgttcctta cattatcata
     3841 agagttatct gctgcgagtt ttgttttact aaaaagataa gtgccgtatc cgacacctgc
     3901 aagtactaag cacattacag gaattagaat ccagaataaa atttttcttc tacgtttgta
     3961 tttcttgctg cttcttcggc tatcatcagt gcctttactc atatattaat tctccttata
     4021 gtcacttttc taagttttat tgtatcattt gttgcattaa agaatgttac gcccgattta
     4081 cggtttcttt aatttttaaa ctttgatgtt attatacaga aattactcga aaaaaaatac
     4141 aaaaaagatg at
//
LOCUS       DABQVC010000221         4127 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.221,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000221 DABQVC010000000
VERSION     DABQVC010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.221"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..744
                     /locus_tag="IBJ56_002589"
     CDS             <1..744
                     /locus_tag="IBJ56_002589"
                     /inference="COORDINATES: protein motif:HMM:NF019371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HAM3418830.1"
                     /translation="AYAIGEKYGHKPQNYLHILNYKQGKKQKNNNSQRTNLLARLNKY
                     INCSEIEPLKYYRENYKNMPPWILVKGLTFGEVYTLYELSKSDVKDSIIKGILGVKTI
                     DEPLREFFAKMMSVIIKYRNWSAHGGRIYNHRCKPHVAYWESLCDSFEITRKEFNKGQ
                     GKNDLLALTMCICFFYQERPESFIEYFVSLNQACQTFKNSNIVTYSQVIRETGLPIEV
                     HSIFLEMLKKREFATAFTKEYKELSEVPD"
     gene            971..1204
                     /locus_tag="IBJ56_002590"
     CDS             971..1204
                     /locus_tag="IBJ56_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418831.1"
                     /translation="MYNLFDDVLEHSIVLADALKRNWSIEVLFLKNNHHVRYKYVVPV
                     HIDNEKHIVQLERFDERIIDINIEDIIFCEVMT"
     gene            1201..1407
                     /locus_tag="IBJ56_002591"
     CDS             1201..1407
                     /locus_tag="IBJ56_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418832.1"
                     /translation="MRLYSFNDFKYICYVEGKDRAVKKLFASLRTDKEIAILNKRIQK
                     DTINIENVYKEYLRGINGAEQNNI"
     gene            1731..3254
                     /locus_tag="IBJ56_002592"
     CDS             1731..3254
                     /locus_tag="IBJ56_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418833.1"
                     /translation="MSRIDIGEIQAFLYQLRAANEPGRKTIQSIKAAVTKYVGDNSLK
                     GKAVDASKNYYQMTYFPLCDAIIEAMDESEERLGQYIQDFHAEVDSSPDAKIDADGLY
                     ELGKMIDRIESKKEALAQRMNSGTEGQMQNYRSQLAIAYKQENILEKYLSFEQSHASF
                     FDHLIDLVQAVQQTIRELQSNIQFNSQTGTYDLSKLNHATVSHMQQALNKARGIKEDI
                     IKELQDYTVLAVVYLDSNGKEQVMWLLERDGLGVENAELKVYLEKNGKYLNPEDYSII
                     TNEDLNKKINKAWRDGVYYLNGNKYDGLTGGILSTSAYVEAGKGFIDKSGLADVVLGL
                     GLSTAAIRGSVTFGKKNKLKGYDYLDDLLGDLNNKVKIKKYDSAESVNKYWHQQNYDQ
                     PPYTPKTPVQDLELLVETKFVRVYDGGSSKLHGGWLMKAEDIKGLTPTQIKDKFALPN
                     IPKFVGEVTLPKGSNIRMGEVNPLFENKGGGIQFDLKGQFIGEFKELGKISEWGGLK"
     gene            3236..3613
                     /locus_tag="IBJ56_002593"
     CDS             3236..3613
                     /locus_tag="IBJ56_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418834.1"
                     /translation="MGRIKVTINAEYIDNKLTAFGKSIEFKNKIVELKENDNCLFVRL
                     LVVPGQELNENTLSNVYAINKLGEIQWQIKNVAPKGNNVYICAPLVGMDIEENDLFVT
                     DFMGRRFEVNQENGELNQVRIVK"
BASE COUNT         1546 a          542 c          835 g         1204 t
ORIGIN      
        1 gcttatgcta ttggagagaa atatggtcat aaacctcaaa attatttaca tatacttaat
       61 tacaaacaag ggaaaaaaca aaaaaataat aatagtcaaa gaacaaattt attagctaga
      121 ttaaacaaat atataaattg ctctgagatt gaacctttaa aatattatcg cgaaaactat
      181 aaaaatatgc cgccttggat attagttaaa ggtctaactt tcggagaagt ctatacactt
      241 tatgaactct ccaaaagcga tgttaaggat agtataatta aaggcatatt gggcgttaaa
      301 actatagacg aacctctaag ggagtttttc gcaaaaatga tgtctgtgat aataaaatat
      361 agaaattggt ctgcccatgg gggaagaata tataatcata gatgtaagcc tcatgttgca
      421 tattgggaat ctttatgtga tagttttgaa ataacccgaa aagaatttaa taaaggacaa
      481 gggaaaaatg acttattggc tttaacgatg tgtatttgtt ttttctatca agaaagacca
      541 gagtcgttta tagagtattt tgtgtcgctt aatcaagcgt gccaaacttt taaaaatagt
      601 aatattgtta cctactcgca agtgattaga gaaaccggat tgccaataga ggtgcattct
      661 atattcttag aaatgttgaa gaagagagaa tttgcaactg cttttacaaa agaatataaa
      721 gagttatctg aagtccctga ctaggtgtta gggctttttt tatgcaaaaa aacaccccga
      781 aaatttattc gaggttgctg ttatgttcag atgtaaaaaa cgggatgtca aacagctaat
      841 agttgaatga aataatgaac gaaaatcgtt catgtgaata ttattacata gatttttatg
      901 taatacaaca ctttttaaca cttgatttta agaacgtttg ttcgtataat gttgtcaaga
      961 ggtgaagtaa atgtataact tatttgatga tgttttagaa cattcaatag tattagcaga
     1021 tgcacttaag cgtaactggt caatagaagt actgttttta aagaacaatc atcatgtgcg
     1081 atacaagtat gttgtgccgg tccacattga taatgaaaaa catattgtac agcttgaaag
     1141 atttgacgaa cgaataattg acattaatat agaagatatt attttttgcg aggttatgac
     1201 gtgagattat atagctttaa tgattttaaa tacatttgct atgttgaggg gaaagatcgt
     1261 gctgtaaaaa aactatttgc tagtttgcgg acagacaaag aaattgctat actaaacaaa
     1321 agaatacaaa aggatacaat taatatagaa aatgtttata aagaatactt gcggggcata
     1381 aatggggcag agcaaaacaa catataaata cttatagctt cttgtaacag cttttcaaaa
     1441 ggcataaacc gcgtaacaaa gccgatttct tcccgtgaat gcgtgtaact gctcaacaca
     1501 aaaccaactc ttaatcagcg ggtcgggggt tcgaaaccct cacaacccat aaaaaacaaa
     1561 cgccagtgac tgttaaagtc gttggtgttt tgtcgttttt acgggcaaaa tgttaataat
     1621 ttcaataata agctgatttc tttttgatta tttatcgatt acatagaaaa taagtggaat
     1681 ttcaaagtat ctaataattt actacatgat atacaaaagg agttgtttca gtgagtagaa
     1741 ttgacatcgg agaaatacaa gcttttttat accagctacg tgcagccaat gaaccaggaa
     1801 ggaaaactat ccaatctatc aaagcggccg tgacaaagta tgtgggagat aatagtttaa
     1861 aaggaaaagc agttgatgca tcgaaaaatt attatcaaat gacttatttc cctctctgtg
     1921 atgcaataat cgaagctatg gacgaaagtg aagaaagatt ggggcagtac atccaagatt
     1981 ttcatgccga agttgatagt tcaccagatg ccaaaatcga tgcggacggt ttatatgaac
     2041 tgggtaaaat gattgaccga atagaaagca aaaaagaagc tttagcacag cgaatgaaca
     2101 gtggaacaga agggcaaatg cagaattatc gttctcagtt agctattgcg tataaacagg
     2161 aaaacattct cgagaaatat ttgtcatttg aacaaagcca cgctagcttt tttgaccatt
     2221 tgattgactt agttcaagca gttcagcaga ccatccgcga actccagtcg aatatccagt
     2281 tcaacagcca gacaggcact tacgatctaa gtaagctgaa tcacgctaca gtgagccaca
     2341 tgcaacaagc tttaaataaa gcacgaggaa taaaagaaga tattataaaa gaactacaag
     2401 actacacagt gcttgcagtg gtatatttag atagtaatgg aaaagaacag gtgatgtggt
     2461 tattagagcg agacggctta ggagtggaga atgccgaact taaagtctat ttagaaaaaa
     2521 acggaaaata tcttaatcca gaagattatt cgattattac taatgaagac ttgaataaga
     2581 aaatcaataa agcttggcga gatggtgttt attatctaaa tggtaacaag tatgatggac
     2641 taactggcgg tattttatct acctcggcat atgttgaagc tgggaaaggg tttatagata
     2701 agagtgggtt agcggatgtt gtgctggggc ttgggttgag tacggctgcg attagaggga
     2761 gtgtgacatt tggtaagaaa aataaactga agggttatga ttatttagat gacctgttgg
     2821 gcgatttaaa taataaagtg aaaataaaga agtatgactc tgctgaaagt gtcaataaat
     2881 attggcatca acaaaactat gatcaacctc catatacacc taaaacacct gtccaagatt
     2941 tagaactttt ggtagaaact aaatttgtca gggtatatga tgggggaagt tcaaaactac
     3001 atggtggatg gcttatgaaa gcagaggata taaaaggttt aacaccgact caaattaaag
     3061 ataaatttgc attacctaat atacccaaat ttgttggaga agttactttg ccaaaaggca
     3121 gcaatatcag aatgggagaa gtaaatcctc ttttcgaaaa taaaggtggg ggtatacaat
     3181 ttgatttgaa aggtcaattc attggtgaat ttaaagaact cggaaaaatc tcagaatggg
     3241 gcggattaaa gtgacaatta acgcagaata cattgataat aaattaactg cttttggaaa
     3301 aagcattgaa tttaagaata aaattgtaga attaaaagag aatgataact gtttatttgt
     3361 gagattattg gttgttcctg gtcaagaatt aaatgaaaac actttaagta atgtatatgc
     3421 aattaataaa ttgggtgaaa ttcaatggca aataaaaaat gttgcgccaa aaggaaataa
     3481 tgtttatata tgcgcaccat tggtaggtat ggatatcgaa gagaacgatt tatttgtaac
     3541 agatttcatg gggcggaggt ttgaagttaa tcaagaaaat ggtgaactca accaagtgag
     3601 aatagtgaaa taaactctcc ttttactcta ataaattttt gtttgttgaa gtttattagg
     3661 atattggatt tactattaaa ggtagcgagg tggactaaaa gtctcgtaat tactggattt
     3721 aaatgataat acgggtgaaa tcaaggatat tgaagagtta ataaatgaaa actcatgtga
     3781 ttaagtaaac aaattacgga ggaataacta tttttaagtt ggaaataagt ttgcgcttta
     3841 gaaagccgac attattaaga aatgctgaaa cagggcacgc accatttaaa gcgataactt
     3901 aatttgaata atttttaaat gaagatgagt gaaaattggc taaaggtact ttctcatgag
     3961 agaaatatat caagtgaact gtccacaaga gaatataaga cctttttaga ggatatgatg
     4021 ttgaggtagt taagctgata gatttgctaa agaaagaatc aaacacaaag atgaggaaaa
     4081 agcttatgac gaagataact catatgaata ataaattaat ttttgaa
//
LOCUS       DABQVC010000222         4125 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.222,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000222 DABQVC010000000
VERSION     DABQVC010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.222"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            105..1535
                     /locus_tag="IBJ56_002594"
     CDS             105..1535
                     /locus_tag="IBJ56_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HAM3418835.1"
                     /translation="MKRRTYVIITGLVLIFVAGAFWITNSTNQSDQKATQTEPLKKTS
                     PANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTAC
                     LEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKG
                     VVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAES
                     AFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKEN
                     NIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKENTLVIVNM
                     HWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFG
                     ADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAK
                     KIVDELNRISKPIEGGVTEYTYFDPF"
     gene            complement(1582..2013)
                     /locus_tag="IBJ56_002595"
     CDS             complement(1582..2013)
                     /locus_tag="IBJ56_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HAM3418836.1"
                     /translation="MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLR
                     AFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPA
                     EFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR"
     gene            complement(2114..3943)
                     /locus_tag="IBJ56_002596"
     CDS             complement(2114..3943)
                     /locus_tag="IBJ56_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0514 family class 1 internalin"
                     /protein_id="HAM3418837.1"
                     /translation="MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLN
                     GLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIK
                     NQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSISGSEVTHNVFKTFNKLPKLTYLYA
                     QNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRT
                     NPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVA
                     LPSARLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMNSYTISSGTY
                     DQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVP
                     GEYTVTLNAENAAGLKATPVTVKVTVHEKPVITADSQISYKKESTKSVDEFLQEIHSS
                     VTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDGEHVNPVP
                     PTPEVKPTPQEETDPTIIPEPQSENSEDQVKENNAKTEEKANKTSLTTKENKVEKADK
                     AEKTNQPKTKALPQTGDTNKSTLPIAGVMLSLAALLIFRKSKS"
BASE COUNT         1238 a          781 c          730 g         1376 t
ORIGIN      
        1 cccaaaacaa tttattttgg gcttttgttt tactaaatat agacttgtgt ttcttcctta
       61 caattactat acttagaaaa aaaggaacta cggaggatat ctagttgaag agacgtacct
      121 atgttattat tactggttta gtacttattt ttgtcgctgg tgctttttgg attacaaatt
      181 ctactaatca atctgaccaa aaagccactc aaaccgagcc actaaaaaaa acaagtccag
      241 ctaatgttaa aaccatttca tcagaagcta agaaaacctt gaattcccta gcaagttcag
      301 gagctgacaa agcttctatt tccgatttaa atcaattaat taaagaacta aaatcctatc
      361 cagttgaaaa aaatgattct ggcgcctatc tccaaaatct cacagcctgt ttagaagctg
      421 taaaatcgta tacgaccggc aaaacagatg aaaaaacgct tgggaaagta tatcctgctt
      481 ttcttgcaag tgaacaaaaa ctatcagcca tcgaaaaaac aaatcaatat gattggtttt
      541 atgccgcagc cgcaaccaat caacaaggtt tgaaagaaaa aggtgttgtc actttgacca
      601 tggttggcga taattcattt ggaacctatc ctgaaacgcc cgaacacctc aaattcgata
      661 acgtattcca aaaaaacaac ggcaataata cctatgttta taaaaactgc cttccttggt
      721 ttaaatctga tgactacact gtcattaacg ctgaaagtgc ctttacgaat gcaacaaaag
      781 cagaaaataa aaaatggcgc atcaaaagtg accctgcaca cgtcgccttt ttaccagcga
      841 gcggtgtaga agcagcaaat ttggccaata accatacaat ggattacttc caagttggtt
      901 acgatgacac attaaaggct tttaaagaga ataatattcc tgttttcaat accgacgctc
      961 cacttgaaac aaccattaaa gggatgaaaa ctgttctact aggctacgat tgccgtatga
     1021 gtcagcaatc tcctgcttat cttgaaagaa ttgtaaaaga cgtgaagaaa tacaaaaaag
     1081 aaaatactct cgttatcgtt aatatgcact ggggcgtcga atatcgcgaa acaccaacgg
     1141 attatcaaac ccaatttggt catgcgattt tagatgctgg tgctgatata attatgggct
     1201 ctcaccctca tcgcctagaa agcgttgaaa aatataaaga taaatacatc gtttatagca
     1261 tgggcgactt tgcttttgga gctgatccta cgctactttc ccgtatgaca tcgatgttcc
     1321 aactgcgctt tacgaaggaa gataataaaa tcgttctaaa agatatttct atcgttccaa
     1381 cttatgaaaa ttcagatggt agtacgacag aaaacaatta tcaaccgctc cctgtgtttg
     1441 gtgatgatgc taaaaaaatc gtcgatgaac ttaaccgtat tagtaaacct atcgagggcg
     1501 gcgtaacaga atacacttac ttcgatccgt tttgataata aaaagcgtag atatcttcta
     1561 acaaagatat ctacgctttt tttatctagc tattaaagta tcgcaaattg catgagccat
     1621 aatataagaa gaaacactac caagaactag cttttctact cggttcatcc cagtcgctcc
     1681 gcaaataatt aaatctgctt ggaactctgc tggaatgtct gtggaaagta agattttcgg
     1741 attaccttta gcaacaaaag tttctacttg tttcactcct gccgttctag ctttttctgc
     1801 gtattcatta acgctcgttt ttaattctag ttcggctttt tcttctaagc tgccatcata
     1861 agaaacattc ggggaaaagg cacgtaaatc gacaatacta gcaattccaa gcacaccgtc
     1921 taattttagc gctagttcca gtcctttttc aaaggctaat tttgctggtt cagaaccatc
     1981 cactgctaca agaatgcgat gatatttttc catcatataa aacctcctac aacttttctt
     2041 atagtattcc ataccctata aaaatgattt taggcctgcc attcattctt tttgctaatg
     2101 aattcacaat aacttaagat ttgctttttc tgaaaatcag cagtgccgct aaactcagca
     2161 ttactcctgc gattggtaag gtgctcttat tagtatcacc agtttgtggc aaagcttttg
     2221 ttttcggttg atttgttttt tctgctttat ctgctttttc tactttgttt tctttcgttg
     2281 ttaaagaagt tttatttgct ttttcttctg tttttgcatt attttctttc acttggtctt
     2341 ctgaattttc gctttgaggt tctgggatga ttgttgggtc ggtttcttct tgaggtgtgg
     2401 gttttacttc tggtgttggt ggaaccggat taacatgttc gccgtcgcta gtagtcactg
     2461 tcacaactac ggttacaggg tctgcttttt ggccgcgatc atttattgca tttaaagtta
     2521 cggtgtattc gcctggggtg tttaaatcta ctactttatc aaaatcacta gttaaaactg
     2581 catttccagt taccgaacta tggatttctt gcaaaaattc gtcgactgat ttagttgatt
     2641 cttttttata agaaatttgg gaatcggctg taataactgg tttttcatga acggttactt
     2701 taactgttac gggagttgct tttagtcctg cagcgttttc cgcatttaat gtcacggtat
     2761 attcacccgg tacatcaagc ttaactactt gatcaaaatc gctctttact gctgtgccat
     2821 catctgtttc agcatgtaca tcttttaaaa attgttcttc tgatgttgca tcgtattgat
     2881 tatagtcaaa actttcatcc gccgttaaat ctagcgtgtg gctaatatca aaatattgat
     2941 catatgtccc gctggaaatg gtataagaat tcatgcttgg tggtgtcggg taacttccag
     3001 tcggaaaatc atagcgtgca ttatattcaa tttcatcaag attgtcgaat tcttcttttg
     3061 ttacaccgct gactgtaata ccatcatcgg taatggatag acgtgcgctt gggagtgcca
     3121 catcattaaa tcctaaataa gtattacttg cggaagtcga tttagaaaat ggtgcaacag
     3181 tgccatcaaa actcgttaaa ggttttggca tcatcgaaaa tggtaaatat aacgtttggt
     3241 ttgtttcatt ataatctaac ttaccagatt taagtgtaat tcttggattc gtgcgccctg
     3301 tattttgccc aaaagcagca agagctttca agttgccatt tttaaaactt tcaaagtcat
     3361 ttaaaggtct aaaatcatca atgccatcaa attgtaagaa tagtgtcgtt aaggctggta
     3421 aggaagcaag cgcagaaata tctgtgattt tcatggagtt ttgcgcataa agataagtta
     3481 actttggcaa cttattgaaa gtcttaaaga cattatgtgt cacttcgctt ccgctgatac
     3541 taagactttg taaattaaca agtccattta aatctacgaa aagactatct tttacattgt
     3601 ctccgcccac tgttaagtaa gtcaaagaag tttggttttt aatcggttca agtgtttgga
     3661 tgttagtatt gttaagagat agtgttacca gatttccagc ttcctccaaa cccgtcaagt
     3721 ctgtataagt gctgccagaa agtgtaacgg tttggatagt gttcatttgt gttttagtaa
     3781 ttggtgcatc acttgcttgc ttgagcagac cattaagata ggttttaaga tttgcatcag
     3841 gaatattaac aatattcgtt tcttctgcgt gagctgctgt ggaaggatat atcattatga
     3901 acatacaaat cgtcgcaaga aatagtttca gtgctttttt catttatact ctccttagtg
     3961 gttaatttct tcccaaagta taaccgcgtt aaaactaact ctcaatacgt tttcataaaa
     4021 tatttcacgt ttgatttgcc ttaatattca tattattcac tcttattttt ataggaatcg
     4081 ctttaaataa acaatggtag cgcttttttg tctaaataaa agaaa
//
LOCUS       DABQVC010000223         4119 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.223,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000223 DABQVC010000000
VERSION     DABQVC010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4119
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.223"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(28..2097)
                     /locus_tag="IBJ56_002597"
     CDS             complement(28..2097)
                     /locus_tag="IBJ56_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HAM3418838.1"
                     /translation="MKKLSMRVILIVTVIFIAFGSANVSIAQERDTINKLPEVELGSL
                     YTSNLITEEVAQDKPAEVENLEEAPTTDDLVQNPDVLEQLIADSDDSDLTVVNSGDFW
                     TIYRNTVNGEYSLHMFGNVPSSKPTAWNSYLNRIKHIEIEEATLTGNFSSYFRNNVFT
                     VLESVRIERSNLSRVTSFALAFYGSGIEKVIIRDNNYPTAPSLLTTEGMFKNCSNLME
                     VDLSGLDTSAVTTMWDMFNSCRALEELDVSHFDTSSVTNMSYMFYDNRNLEVLDVSNL
                     DTSSVTNMYAMFEDCTSLEELDVSNFDTSSVTDMYRVFNGCEKLKKLDVSNFDTSSAT
                     EMVQMFRNCSALEKLDVSNFNTSLVTDMRAMFAGCTSLEALDVSNFDTSSVTNMAAMF
                     SDNEKLEKLDLSTFDTSSVTNMGTMFKNCTALKSLFLDNFTHAASSTDMFTGTTSLTY
                     LFVSHNVSNFNGLENTSWYDEKNWVQFSNLSQLQTYHRQQSEPIGYRKGAFLSLTMDA
                     MGGEFEDAEEQKVQNKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAAVSTT
                     IYAKWVENYTVIIPASISLNEASELKVQGINRGSKTLSVGLNYEETTISESNKLTLAN
                     TADTTVQCLAPLSWDGSETNPEKAILTLAPGSEITEGEAVMVIEAPENIQAGKYTGNV
                     VFSIKYE"
     gene            complement(2233..4080)
                     /locus_tag="IBJ56_002598"
     CDS             complement(2233..4080)
                     /locus_tag="IBJ56_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HAM3418839.1"
                     /translation="MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSL
                     DTSDVITEGVPQEKPAEAENLEEIPTTDELMQNPNVLERSVADSDDSDLTVVSSGAYW
                     TLYYNSANGEYSLRMFGNVPSSRPTAWNNYLKRIKHIEIEEATLTGDFVGYFGWFIGL
                     KGVRIEGSDLSGVTSFQQAFSNSSLEKVIIKNNYYSNSQSLTNTKQMFFMAKNLSELD
                     LSGLNTSFVTTMERMFEGCENLKILNLSNFDFDTSSVINMDYMFADCTNLEELDVSKF
                     DTSSVTFMQMMFQYCKSLEKLNLSSFDTSSVTRMNSMFEGCTSFEELDLSSFDTSSVG
                     NMQTMFQGCTNLKVLYLDKFDDNITTNKNNMFGNTPLLSYLRFSHRFTKLENIGLENT
                     NWYDEKNWVQFSNITQLQTYNKQQSEPTGYRKGAFFSLTMDAMGGEFEDAEEQKVQNK
                     VSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPAS
                     ISLNEASELKVEGINRGGKTLSVGLNYGKTTISESNKLTLSNTADTTVQCLAPLSWDG
                     SETNPKNAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSVNYE"
BASE COUNT         1220 a          894 c          659 g         1346 t
ORIGIN      
        1 catgatcact agtctggcta atttacatca ttcatactta atcgaaaata cgacgttccc
       61 cgtatatttt ccagcctgga tgttctctgg tgcttcaata accatgactg cctcgccttc
      121 tgttatttcc gaacctgggg ctagggttaa aatggctttt tctggattag tttctgaccc
      181 gtcccaactc agtggtgcca aacattggac tgttgtgtct gccgtattgg ctaaagttag
      241 cttgttgctc tcagaaatgg ttgtttcctc ataattcaaa cctacggata aagttttact
      301 ccctcgatta atcccttgta ctttcaattc ggaagcttca tttaaggaaa tagacgctgg
      361 aataatcacc gtgtagtttt ctacccattt ggcgtaaata gttgtagata cagcagcagg
      421 caatgaaaaa tcaaacttat tagtgaaatt ttgatcaaga taccacccgt caaagtaatg
      481 tccttctttt actggaatca cttcttccca gtactcccca gaaattttat tttgtacttt
      541 ttgttcttcc gcatcttcaa attctccacc catcgcatcc attgttagag aaaggaaagc
      601 gccttttcta tagccaatag gttcactttg ttgcctgtga tatgtctgta gttgcgagag
      661 attagagaac tgtacccaat tcttttcgtc ataccagctt gtattttcta acccattaaa
      721 attgcttaca ttgtgactga caaacaagta ggttagggag gtggttccag taaacatatc
      781 tgtcgagctt gctgcatgtg taaaattatc tagaaataaa gattttaacg ctgtacaatt
      841 tttaaacatg gtacccatgt tagtcactga actggtatca aaggtactta aatcaagctt
      901 ctccagtttt tcattatcag aaaacatggc agccatatta gttactgaac tcgtatcaaa
      961 attacttaca tctaacgctt caagactagt acaaccagca aacatggcac gcatatcagt
     1021 tactaagctc gtattaaaat tacttacatc caacttctca agggcgctac aatttctaaa
     1081 catttgaacc atttcagtag cggaactggt atcgaaatta cttacatcta gtttcttcag
     1141 tttttcacag ccattaaaca ctctatacat atcagttact gaactcgtat caaaattact
     1201 tacatccagc tcttcaagac tagtacaatc ttcaaacatg gcatacatat tagttactga
     1261 actcgtatca aggttgctta catccagcac ctcaaggttt ctattatcat aaaacatgta
     1321 agacatatta gttactgaac tcgtatcaaa atgacttaca tccagttcct caagtgccct
     1381 acagctgtta aacatatccc acatagtagt taccgcacta gtatcaagac cactcaaatc
     1441 aacctccata aggttggaac aatttttaaa cataccttcc gtagtgagta aagatggtgc
     1501 tgtcggataa ttattatctc taatgataac tttttcaatt cctgaaccat aaaatgcgag
     1561 tgcaaaagac gtcactctag atagattcga acgttcaatt ctcacactct caagtactgt
     1621 gaaaacatta tttctaaaat acgatgagaa atttcctgtc aaagtagctt cttcaatctc
     1681 tatatgttta attctgttca aataactatt ccaagcggtt ggtttactac ttggcacgtt
     1741 accaaacata tgcaagctat attcaccgtt cacagtatta cgataaattg tccaaaaatc
     1801 acctgagttt actactgtta aatccgaatc atccgaatca gcaataagct gctcaagaac
     1861 atctggattt tgcaccaaat catccgtagt tggggcttct tctagattct cgacctctgc
     1921 cggtttgtct tgcgcgactt cttctgtaat gagattagag gtataaagag aacccagctc
     1981 aacctctgga agtttattta ttgtatccct ttcttgtgcg atagaaacat tagcgctccc
     2041 aaaagcaatg aaaataacgg taacgattag gatgactcgc atggaaagct tcttcatcag
     2101 ctcccctcct tcttccgtaa ttagtttcta gttgctaaac attctagctg ttattttatt
     2161 atagaggagt aagggggtac ctctagccat aaaattttaa cttcttaaaa ttttatggct
     2221 tgcttagcaa agttattcat agttaaccga aaatactaga ttccctgtat attttcccgc
     2281 ctggatattt tctggcgctt caatagccat gactgcatcg ccttctgtta tttccgaacc
     2341 tggcgctagg gttaaaatgg cattttttgg attagtttcg gaaccgtccc aactcagtgg
     2401 tgccaagcat tggactgttg tgtctgccgt attggacaag gttagcttgt tgctctcaga
     2461 aatggttgtt tttccataat tcaagcctac ggataaggtt ttaccccctc gattaatccc
     2521 ttctactttc aattcggaag cttcatttaa ggaaatagaa gctggaataa tcaccgtgta
     2581 gttttctacc catttggcgt agatagttgt agatacagca gcaggcaatg aaaaatcaaa
     2641 cttattagtg aagttttgat caagatacca cccgtcaaag taataatctt cttttacagg
     2701 aactatctct tcccagtatt ccccagaaac tttattttgt actttttgtt cttccgcatc
     2761 ttcaaattct ccacccatcg catccattgt tagagaaaag aacgcgcctt ttctgtaccc
     2821 tgtaggttca ctttgttgtt tattatatgt ctgtagttgc gtgatattcg aaaactgtac
     2881 ccaattcttt tcgtcatacc agtttgtatt ttcaagacca atgttctcaa gcttggtgaa
     2941 tcgatgacta aagcgtaaat aggataacaa aggagtattc ccaaacatgt tattcttatt
     3001 agttgttata ttatcatcaa atttatctaa gtataaaact tttagattcg tgcatccctg
     3061 aaacatggtt tgcatatttc caaccgaact cgtatcaaaa ctgcttaagt ctagctcttc
     3121 aaaactagta catccttcaa acatactatt catgcgagtt actgagctcg tatcaaaact
     3181 gcttaaattc agtttctcaa gcgatttaca atattgaaac atcatctgca taaaagtaac
     3241 agagctggta tcaaatttgc ttacgtcaag ttcttccagg ttagtacaat ccgcgaacat
     3301 ataatccata ttaataactg aacttgtatc aaaatcaaag ttacttaggt tcaatatttt
     3361 aaggttttca cacccctcga acatcctttc cattgtggtt acaaaactcg tatttaaacc
     3421 acttaaatca agctctgata gatttttcgc cataaaaaac atttgcttcg tatttgttaa
     3481 agactgcgaa ttagaataat agttattttt aatgataacc ttctcaaggg atgaattaga
     3541 aaacgcctgt tgaaaagatg tcactcccga taaatcagac ccttcaattc taacgccctt
     3601 taatccaatg aaccaaccaa aataaccaac aaaatcacct gtcaaagtag cttcttcaat
     3661 ctctatatgt ttaattcttt ttaaataatt attccaagcg gttggtctac tgcttggcac
     3721 gttaccaaac atgcgcaagc tatattcacc gttcgcagaa ttataataaa gcgtccagta
     3781 agcacctgag cttaccactg ttaaatctga atcgtccgaa tcagcaacag acctctcaag
     3841 aacatttgga ttttgcatca actcatccgt agttgggatt tcttctaagt tctcggcttc
     3901 ggctggtttt tcttgcggga ctccttctgt aatgacatca gaggtatcca gagaacccag
     3961 ctcctcttct ggaagcttat tcgttgtgtc cctttcttgt gcgatagaaa cattagcgtt
     4021 ccccagtgca ataaaaagca cagaaataat aagaaccact cgcatggaaa acttcttcat
     4081 cagctcccct ccttctttcc taattagttt ctagatgcc
//
LOCUS       DABQVC010000224         4041 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.224,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000224 DABQVC010000000
VERSION     DABQVC010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4041
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.224"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(75..1475)
                     /locus_tag="IBJ56_002599"
     CDS             complement(75..1475)
                     /locus_tag="IBJ56_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HAM3418840.1"
                     /translation="MKIRWIRLSLVTVLIIAVVFVGVIGFQKYQFSKSRNKVIMQMDR
                     LMKDQDGGNFRRLDKKENGVEIISYIPKTTEKKDNEIIQKEIEKATDAEVKKLNRDKE
                     TQGIIFYTYQKHRMAEQAISYKAVQSEYVKEGRTKFVLKDKKDICKNIVTDAETGALL
                     TLGEVLIKSNQTKLNLKTAVEEELIKTGGFSLKDVGNLGEIKSLVKWNQTDFEITNSE
                     LILPVKIPGAPEPNKVKVKLADIASSVNKRYLPSSVKVPEVPKAKTNKRIALTFDDGP
                     SASVTPGVLDTLKRHNVKATFFVLGSSVIQNPGLVKRELEEGHQVGSHSWDHPQLTKQ
                     STQEVYNQILKTQKAVFDQTGYFPTTMRPPYGAVNKQVAEEIGLPIIQWSVDTEDWKN
                     KNAGIVTKKVLAGATDGAIVLMHDIHKTTAASLDATLTKLKNQGYEFVTIDELYGEKL
                     QIGKQYFDKTDSRMVK"
     gene            complement(1768..2577)
                     /locus_tag="IBJ56_002600"
     CDS             complement(1768..2577)
                     /locus_tag="IBJ56_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HAM3418841.1"
                     /translation="MLNYLSSLNPVLLALLAGIFTWACTAAGASLVFFFKNLNKKWGN
                     VMLGFAAGVMLAASFWSLLAPAIEMSKDLGKFSFVPALVGFLLGGIFLRVIDRIIPHL
                     HFGFPEQAKEGPKTSLRKSILLVLSITIHNIPEGAAVGVAFGAVITGDTETLITAIVL
                     ALGIGIQNFPEGAAVSIPLRGEGLSRGKSFWYGQLSAVVEPIFAVIGAVLVVFVTPIL
                     PFALAFAAGAMIFVIVEELIPESQVEGSTDLATAATMAGFAVMMVLDVALG"
     gene            complement(2604..2795)
                     /locus_tag="IBJ56_002601"
     CDS             complement(2604..2795)
                     /locus_tag="IBJ56_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418842.1"
                     /translation="MAKPIEEIGEEIGAKVEKVARKTGNVAGTAAKLSVYSSIWAVKT
                     GVNKTRAFAQGFKQGWSGK"
     gene            3138..4010
                     /locus_tag="IBJ56_002602"
     CDS             3138..4010
                     /locus_tag="IBJ56_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HAM3418843.1"
                     /translation="MTGLGTLLFLVGIGVLIFGLVSFRRKNWPRKKTQIIIISSILAI
                     IIGVGIIPTTDEEASTEEPTKQEEKTEKVDNTPILKAETTFTTDDEGTLVVEGKTNPG
                     AEVTLDFVAIPDAVTTADENGAFSLSVNQLDKAQDAVLSIVIDGQTKEQTLKLALTPA
                     YETKLTAKAEAERVAAEKAEAERVERERVAAEEKRAADAKIAAEKKAEEARVAAEKKA
                     AEEKRVAAERSKAAAAQPDTSNEQGQMVYITATGKRYHYDQNCRGLNNSNGETAVTVA
                     QAKAQGLTLCKFEQ"
BASE COUNT         1243 a          837 c          691 g         1270 t
ORIGIN      
        1 ttcacgtaaa gaaaacttta catttcgtat aaaaaaagta gctaaaatga ttcattcatc
       61 ttagctactg atttttattt caccattctt gaatctgttt tatcgaaata ttgcttccca
      121 atttgcaatt tctcgccata aagttcatca atagtaacaa actcatatcc ttgattcttt
      181 aatttagtca atgtagcgtc aaggctcgca gcagtggttt tatgaatatc atgcattagt
      241 acaatcgctc cgtccgttgc accagcaagg acttttttcg ttactatacc agcatttttg
      301 tttttccaat cttctgtatc aacagaccac tgaattattg gaagaccaat ctcttcagcc
      361 acctgtttgt ttactgcacc atatggaggg cgcattgtag ttggaaaata tccagtttga
      421 tcaaatactg ctttttgcgt ttttaaaatt tggttgtaca cttcttgtgt cgattgttta
      481 gttaattgcg ggtgatccca tgagtggctg ccaacttggt gcccttcctc taattcacgt
      541 tttactaaac ccggattttg tatgacacta gagccaagta caaagaatgt cgcttttaca
      601 ttgtggcgtt tcaatgtatc aagtacgcct ggtgttaccg aggcacttgg accgtcatca
      661 aaagtaagcg caattcgctt gttggttttt gcttttggca cttctggaac tttcacactg
      721 cttggtaagt agcgtttatt cacagaacta gcaatatcag caagttttac ttttacttta
      781 ttcggttccg gtgcacctgg tatttttact ggcaaaatta gttcagagtt cgtaatttcg
      841 aaatctgttt gattccattt cactaaactc ttaatttccc caagattccc aacatctttt
      901 aaagaaaaac cccctgtttt aatcagttct tcttcaacag ctgtttttaa atttaattta
      961 gtttgattac tttttattaa tacttcccca agtgttaaca aagcacctgt ttctgcgtcg
     1021 gttactatgt ttttgcaaat atctttttta tctttgagta caaatttagt tctaccttct
     1081 tttacgtact ctgattgaac agctttataa gatattgctt gctcggccat tctatgcttt
     1141 tggtaagtgt aaaaaataat cccttgagtt tctttatctc tatttaactt tttaacctct
     1201 gcatctgtgg ccttttcaat ttctttttgg ataatttcgt tgtctttttt ctcagttgtt
     1261 ttaggaatgt aagaaatgat ttccactcca ttttctttct tatccaagcg gcggaaattt
     1321 cctccatctt ggtctttcat tagtctgtcc atctgcatta ttactttgtt gcgcgacttt
     1381 gaaaattggt atttttggaa acctattaca ccaacaaaaa ccacggcaat aatgagaacg
     1441 gtaactagtg aaagtctaat ccacctaatt ttcacattat gcacctcacc ttagaaaaac
     1501 cttccccagc ttttcttata aaacaattat acatgaaaaa aagcaacttt ctagcttttg
     1561 tactaaaata ggaaaaaagg accaacaatt ctataacaat tgtcaaaaaa aagacacgga
     1621 taaagtggga gcttttaccg tgtccgattt atagttacag gattacccct gaaaactaac
     1681 atattgtgaa gtatttcact attaatttta ccgtaaaaaa acgcattccg caaatattaa
     1741 atgtcgtttt ttgtccagtt tattatttta tcctaacgca acatctaaaa ccatcattac
     1801 tgcaaatccc gccatcgttg cagcagttgc taaatcggtc gaaccttcta cttgagattc
     1861 aggaattaat tcctctacaa taacaaaaat cattgcacct gctgcaaagg ccagcgcaaa
     1921 cggcaaaata ggtgtaacaa aaacaaccaa tacagcacca attacagcga aaattggttc
     1981 aactaccgct gaaagttggc cataccagaa acttttccct ctcgagagcc cttctccgcg
     2041 caaaggaatg gatactgccg ctccctctgg aaagttttga ataccaatac caagcgccaa
     2101 aactattgca gtaataagcg tctccgtgtc tccagttatc actgctccga aagctacccc
     2161 aacagctgcc ccttctggaa tattatgaat agtaatggaa agaaccagta agatactttt
     2221 tcgaagagaa gtttttggtc cttccttcgc ttgctctgga aacccgaaat gtaaatgtgg
     2281 aataatacgg tcaataacac gtaaaaatat tcccccaagc aaaaagccaa ctagagctgg
     2341 tacgaaggaa aacttcccta aatctttact catttcgatt gcaggggcaa gaagcgacca
     2401 gaagcttgct gcgagcataa cgcctgcagc aaatcctagc ataacattgc cccatttttt
     2461 atttagattt ttaaagaaaa atacgagtga agctcctgct gcggtacaag cccatgtaaa
     2521 aataccggca agaagtgcta acagtaccgg atttagtgac gataagtaat ttaacaattc
     2581 atgctctccc ttttcctatg cttttattta ccagaccagc cttgtttaaa gccttgagca
     2641 aatgcacgag tcttatttac gcctgttttc acagcccaaa tggaactata aacagatagt
     2701 ttagctgccg ttccagcaac atttccagtt ttccgtgcaa ctttctctac ctttgctccg
     2761 atttcttcac caatttcttc tatcggtttc gccatttcta gcacctccaa agcacttgtc
     2821 tttccttcat cataaagcaa tcaatcggat tattcaagct gcttcctctt tatccttttc
     2881 actaatacgc ttcctttcgc tatgatgaat ttctagctaa ttcatctaac ctcgacattc
     2941 tgattaatct ccatttactt agacaactac tgtcttttta gcaaaatatg taattttttt
     3001 atcatttttt tgattttctg aacattttca ttgaatttct ttgtaaaaag tacaaaaaac
     3061 ggctgattta acttgtgcat taactcacat tatgcatata ataattttgt tagacaaaaa
     3121 gggagaggaa gatgtatatg acgggattag gaactttatt gtttctagta ggtattggtg
     3181 tattgatttt tggactggtg agctttagaa ggaaaaattg gcctcgtaaa aaaacacaaa
     3241 tcattattat tagttctatt ttagctatta ttattggtgt tggaattatt ccgaccacag
     3301 acgaggaagc ctcaactgaa gaaccaacca aacaagaaga aaaaacggag aaagttgata
     3361 ataccccaat tttaaaagca gaaacgactt ttacaacaga tgatgaaggt accttggtcg
     3421 tcgaagggaa aacaaatcca ggggcagaag taacgcttga tttcgttgca attcctgacg
     3481 ccgtgactac agctgatgag aacggcgctt tcagtctttc tgtaaatcaa ctggataaag
     3541 cacaagatgc cgttctttct attgtcattg atggccaaac gaaagaacaa acgcttaaac
     3601 tagcactaac ccctgcttac gaaacaaaac ttactgctaa agcggaagca gagcgagtag
     3661 ccgcggaaaa agcggaagca gaacgagtag aacgcgaacg tgtagcagcg gaagaaaaac
     3721 gcgcagctga tgcaaaaatt gcggctgaaa agaaagccga agaagctaga gtggcagccg
     3781 agaaaaaagc tgcggaagaa aaacgggttg cagcagaacg ttcaaaagct gcagctgcac
     3841 aaccggacac gagtaacgaa caaggacaaa tggtttatat cactgctact ggcaaaagat
     3901 atcattatga tcaaaattgt cgcggcttaa ataactctaa tggcgaaact gctgtgacag
     3961 ttgctcaagc aaaggcacaa ggcttaactt tatgtaaatt tgaacaataa aaataaagca
     4021 aaatttctta tcatgagaaa t
//
LOCUS       DABQVC010000225         4028 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.225,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000225 DABQVC010000000
VERSION     DABQVC010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4028
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.225"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            11..1294
                     /locus_tag="IBJ56_002603"
     CDS             11..1294
                     /locus_tag="IBJ56_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HAM3418844.1"
                     /translation="MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWE
                     AILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGW
                     FGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVL
                     LFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKS
                     RKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWT
                     TNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMV
                     PPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQL
                     PNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK"
     gene            1295..2395
                     /locus_tag="IBJ56_002604"
     CDS             1295..2395
                     /locus_tag="IBJ56_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF917 domain-containing protein"
                     /protein_id="HAM3418845.1"
                     /translation="MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPI
                     KLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPME
                     AGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIG
                     IMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRE
                     TSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVH
                     FQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTD
                     KGIETVGPRYFGYDVDFEPLEELVKKEERRHV"
     gene            2388..3938
                     /locus_tag="IBJ56_002605"
     CDS             2388..3938
                     /locus_tag="IBJ56_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HAM3418846.1"
                     /translation="MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESL
                     HRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPE
                     DMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKND
                     QELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKAL
                     EQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDV
                     GGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGP
                     DSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMT
                     EDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQ
                     YEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLR
                     VKVVGNLV"
BASE COUNT         1211 a          741 c          974 g         1102 t
ORIGIN      
        1 gcggaacata atgacagaga agaaatcagt ggagcaaacg caatcctggc agagtttagc
       61 atttgtatgg accggagcaa tgatttgtgt accgagtcta ctagttggag gaactttaat
      121 ttcaggtatg cctctttggg aagcaatttt aatagcactt ttaggatacg gcgttattgt
      181 cttatttatg atatatcaag gaatgcaaag tagcgattta ggtattccag cagttagtgt
      241 agcttcacag gtttttggag aacaagggtc gaaaaaaatc atatctattc ttttagcgat
      301 tgcttgtcta ggatggtttg gtattcaagc caatgtatgt ggtgcagcat tctcacagtt
      361 tctaggtatt tatggaatta atcttccagt accagtttct tccttaattt ggggagttat
      421 catgttactt tcagctattt atggtattcg tattttgagt attttaaatt atatcgcagt
      481 tccagtttta ctatttgtat gtatttacgg acttgttgtt tctttaaacg atggcggact
      541 agctattgtg gaaaactata aaccagcagg aagtatgtcg tttatgacag gactagcaat
      601 tacaattggc tcatttgcgt taggggcagt aattgcagga gactattctc aatatacaaa
      661 atcgcgtaaa gatgttgtaa aagcagctat tgtcgggatt ttgccatcag gtgtgcttat
      721 gattacggtt ggagcggtac ttgcacttac ggcgggtaca gcagatattt ctgtcgtatt
      781 tacaaactta ggattaccag ttcttggtat tatcggcttg atacttgctg catggacaac
      841 aaacgcagta aatgcctttt cgggaggtat tgcgattatc aatgtattta acatctctga
      901 aaaatatcac aaagtagcag tggcagttgc aggcggactt ggaacaatac tcgcggttat
      961 cggaatttta aaccactttg ttccaattat gtccgtactt tcagcaatgg taccacccgt
     1021 tgcaggagta atgattgctt cttactggat tgtccaaaaa ggagataaat ccaaatgggc
     1081 gccagtacca ggtgtcaact ggctgggtgt aagttcttgg ctagttggtg cagtcattgc
     1141 ggggattcca gtcattttga catttttccc ggagctacca caattaccaa atcaaccact
     1201 tatcggtatt atcttgtcgc tggctgttta cttgatcgga gcgaaagtgc tgagcgggaa
     1261 aaccaacaat gtagaaaact tggagggaaa ataaatgcgt tatttagatg aacaagctat
     1321 tgaaaatatc gcgattggtg ctgcgtttct tggcactggt ggcggaggag atccatatat
     1381 aggcaagatg atggcattaa ctgcaattaa aaaacatgga ccaattaaac tgttatcccc
     1441 agaagaaatt gcggatgatg attatttcat tccagccgcg atgatggggg caccgtctgt
     1501 actcattgaa aaatttccta aaggcgacga attcgttcgt gtatttgaaa aattaggtag
     1561 atatgtaggc aaagaagtaa aaggaacatt tccaatggaa gctggtggag taaactcaat
     1621 gatcccaatc gttgtggcgg ctcaactagg tttgccaatg gtggactgtg acggcatggg
     1681 ccgagctttt ccagaactac aaatggtgac gttccatcta gacgggattt ccgcaacacc
     1741 aatggctatc accgatgaaa aaggtaatat tggcatcatg gaaacgattg ataataaatg
     1801 gaccgaacga cttgcacgtg tgacaacggt cgaaatgggc gcgagttctc ttgtgagcct
     1861 gtatccgtgt aacggcgcgc aaattaagca aagtagtatt aaaaatatcg tgacgctatc
     1921 tgaagaaatc ggtaaagtaa tccgtgaaac ttcgatggac gaagcagaaa aactacaaaa
     1981 attattagat gtaacgcacg gttatcattt attcgaaggg aaaattaccg atgtagttcg
     2041 ggaaacgcgt gcaggcttca actttggtcg tgtgaaaatc gacggactaa acaaagacac
     2101 aggtagcgaa gtcattgttc atttccaaaa cgaaaatctt gttgcggaga aaaatggcga
     2161 accgatagca attacaccag atttaatttg tatggtagac cttgaaacgc tgatgccggt
     2221 aacgacggaa gcgctcaaat acggaaaacg tgtccgcgtg atggcactac cagctgatga
     2281 tgcttggaga acggacaaag gtatcgaaac agttggaccg cgctatttcg gctatgatgt
     2341 cgattttgaa ccactagaag aacttgtcaa aaaggaggaa cgccgtcatg tataaaattg
     2401 gaattgacgt tggtggtaca aacaccgatg ccgttatttt agatgaaaat caacaactca
     2461 ttcatagtgt aaaaatgcca acgagtgaag atattgaaac aggaattact gagtcacttc
     2521 atcgcgtatt gagcgaaacg ggcattgatc gctcgaaagt aacgcacgcc atgcttggaa
     2581 caacccagtg tacgaacgcg attgtggaac gtaaaaaatt agcaaaagtt ggcgttcttc
     2641 gtttaggcta tcctgcaaca gcatccgttt taccatatac agcttggccg gaagacatgg
     2701 ttggcttttt atctggaaaa tataaattaa ctggtggcgg ctatgagtat gatggtcagg
     2761 tgctatcaga aatcaacgaa gcagaaatcc gtgaaacctt agctagttgg aaaggtgaag
     2821 tggaatccgt cgcagttgtt ggcgtctttt cttccttgaa aaacgatcag gaattagctg
     2881 ttcaaaaaat tattgaagaa gaactaggcg cagatattcc ggtttcgatt tcctcttccg
     2941 taggttctgt tggactgatt gaacgcgaaa atgcgacgat tttaaacgca gcccttttca
     3001 aagttattgc ggcaacgagt gatggttttg aaaaagcact agaacaagaa ggaattgcgc
     3061 atgctgaaat ctatctttgc caaaacgacg ggactttaat gtcactaaac tatgcaagac
     3121 aattcccgat tttgacaatt gcttgtggac caacgaacag tatccgcggc gcatcctact
     3181 tggcgggact taaagacgcg atggttctcg atgttggtgg cacgacttct gatattggag
     3241 tgctgacgga tggtttccct agagagtcct cgcttgcggt tgatgttggc ggagtgcgta
     3301 ccaactttag aatgccagat attatttcca tcggacttgg tggaggaagt atcgttcgcg
     3361 aaaaagatgg cgacataaca atcggaccag atagcgttgg ctaccgtatt tccgaagaag
     3421 cactagtttt cggaggtaaa acgatgacca ctaccgacat cgcggttcgt ctaggtaggg
     3481 cagaaatcgg taaccctgaa ttagtcgcac atatcccaac cgattttgcc gaaaaagcct
     3541 ataaaaaaat tgctgaaatg accgaagatg cgattgataa aatgaaaacc agttcgggga
     3601 gtgtaagtct agtacttgtt ggcggtggta gcgtgattat tccagacgaa atctctggtg
     3661 tcgcacaaat tttccgcgac aaaaacggcc cagtagccaa cgcaatcggc gcatccattt
     3721 cccaaatcag cggacaatac gaacaaatct acatctattc tcaaatcgag cgggaagaag
     3781 cgctccaaga tgccgaacaa aaagcgagag aacaagcaac tctagccggt gcagtgactg
     3841 actcgattga agtggtggaa gtggaagaaa tcccattagc gtatcatccg ggtaatgcaa
     3901 ccagattgcg cgtgaaagtt gtgggaaatt tggtttaagg gaagtaagaa gtaaatagta
     3961 gtgcattgct gacttcagac tggaaacaaa gtaagaaatt actttgcttc cagtctattt
     4021 ttgtataa
//
LOCUS       DABQVC010000226         4017 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.226,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000226 DABQVC010000000
VERSION     DABQVC010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4017
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.226"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            22..735
                     /locus_tag="IBJ56_002606"
     CDS             22..735
                     /locus_tag="IBJ56_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3418847.1"
                     /translation="MSGMAKYMEIYIDIRDKINQNKYEINEKLPDGDSMARTYDCSKL
                     TVKKALDMLVQEGMIIRRRGAGTFVKSHSTNGGEFALGPMSGLVNTFGKDNIKSKVIL
                     FSIEKPSKEVAEKLEMQDDYIYRIIRMREVGHKAYSIEHTYMPLAIIPGLEPRHLEDS
                     IYNYIRDDLKLKMQSAHVWVRGDKSNQEDSKLLNLEEPTFMMEIEKLAHLEDGRVFEY
                     SITRHTYESFVFETVFVQN"
     gene            complement(775..1110)
                     /locus_tag="IBJ56_002607"
     CDS             complement(775..1110)
                     /locus_tag="IBJ56_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HAM3418848.1"
                     /translation="MPKLPNCPECNSEYAYEDRGLLICPECGHEWSAVAEEATEEKVF
                     KDANGNVLTDGDSVTVIKDLKVKGASNPIKMGTKVKNIRLVDGDHDIDCKIDGFGPMK
                     LKSEFVKKI"
     gene            complement(1147..1866)
                     /locus_tag="IBJ56_002608"
     CDS             complement(1147..1866)
                     /locus_tag="IBJ56_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAM3418849.1"
                     /translation="MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHAN
                     QKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNN
                     VNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDADELLELLMEADIDVRD
                     ILDEDGQAIIYAEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFEKL
                     IDALEDLEDVQKVYHNVELED"
     gene            complement(1962..2471)
                     /locus_tag="IBJ56_002609"
     CDS             complement(1962..2471)
                     /locus_tag="IBJ56_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HAM3418850.1"
                     /translation="MEEWDLLNENRELTGKTHIRGEKLAPGELHLVVHVCIFNEKGQL
                     LIQKRQKDKEGWPNYWDLSAAGSALKGETSLQAAEREVQEELGITIDLSNTRAKFSYH
                     FEAGFDDYWFITKDVELSDLTLQKEEVADARFVTKEELEVLRSSGEFIPYFFLNQLFN
                     LKNATSIHF"
     gene            complement(2521..3468)
                     /locus_tag="IBJ56_002610"
     CDS             complement(2521..3468)
                     /locus_tag="IBJ56_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HAM3418851.1"
                     /translation="MRKAERLNDMMLFLNDKNSFQLSDIMAKYGVSRSTAIRDIQSLE
                     EIGMPIYSERGRNGHYRVLRNRLLSPIVFNIDEVFALYFSMLTLKAYETTPFHLSVEK
                     LKTKFERCLSAEKIEMLRKTEEVFSLGYIKHNNQCEFLDVILQFTMEEKVCQINYDKN
                     GTEKTYIVQFYNISSAYGQWYVTSYNFETKRMQVFRCDKILALKENDTFEAKKMEELK
                     RVADSFNKKADVTTFEVEIASNGVDLFFKENYPSMKLRQQQGKNVIHGFYHKGEEQFI
                     INYLLGYGEKIIAIQPDSLRDMLLNELDTIKKHMQNLSS"
     gene            3563..>4017
                     /locus_tag="IBJ56_002611"
     CDS             3563..>4017
                     /locus_tag="IBJ56_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase-like
                     domain-containing protein"
                     /protein_id="HAM3418852.1"
                     /translation="MKNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVVFY
                     VEAGKKALEDLGLIVEELDVAAENLEEITMTLKKNDFIYVTGGNTFFLLQELKRTGAD
                     KLILEEIAKGKLYIGESAGAVITSPNISYIQSMDSVKKATNLTNYDALN"
BASE COUNT         1192 a          782 c          695 g         1348 t
ORIGIN      
        1 atcagtaaag gagccaataa aatgtcggga atggctaaat acatggaaat atacatagat
       61 atccgtgata aaatcaacca aaataaatac gaaattaacg agaaattgcc tgatggggac
      121 agtatggctc gcacgtatga ttgcagcaag ctcactgtca aaaaagcact ggatatgctt
      181 gtacaagaag gcatgattat tagacgacgc ggggctggga ctttcgtgaa atcccattcg
      241 actaacggcg gagaattcgc gcttgggcca atgtccggac ttgtaaatac atttggaaaa
      301 gacaatatta aatccaaagt cattttattt tctattgaaa aaccatcgaa agaagtcgca
      361 gagaaattag agatgcagga tgactatatt taccgaatca tccggatgag agaagttggt
      421 cataaagcct attcgattga acatacttat atgccacttg cgattattcc aggtctagaa
      481 ccacgtcatt tagaggactc gatttataat tatattcggg atgatttgaa acttaagatg
      541 cagagtgcgc atgtttgggt acgcggggat aaatcaaatc aagaggatag caagctcctc
      601 aatttagaag aacctacttt tatgatggaa attgaaaaat tagcgcattt ggaagatggt
      661 cgtgtgttcg aatattcgat aacgcgccat acgtatgaat cgtttgtgtt tgaaacggtt
      721 tttgtgcaga attaaaaaaa acagcgactc tctgaattag agaatcgctg ttttttatat
      781 cttcttaaca aattctgatt ttaatttcat tgggccgaag ccgtcaattt tgcaatcaat
      841 gtcgtggtcg ccgtctacta ggcggatatt ttttactttt gttcccattt tgattgggtt
      901 tgatgcgcct tttactttaa gatctttgat gactgtgaca gaatcgccat ctgttagtac
      961 gttgccgttt gcatctttga acactttttc ttcggtagct tcttctgcta cagcgctcca
     1021 ctcatggccg cattccgggc agattaataa gccgcgatct tcgtaggcat actctgagtt
     1081 acattctggg caatttggta attttggcat tttatcaatt cctccgattg ttgtaatagt
     1141 tggctgttaa tcttctaatt cgacgttatg atatactttt tgcacgtctt ctaggtcttc
     1201 taaagcatca attagtttct cgaatttttc taagtcctca cctgataatt gaatatcatt
     1261 ttgaggaatc atttcgattt ccgctactgt aaattcttca attccagccg ctttcaaacc
     1321 ttcttgtact ttgtggaaat cttctggttc tgcataaata atcgcttggc catcttcgtc
     1381 taaaatgtca cgaacatcaa tatccgcttc cattaaaagt tctaataact catccgcgtc
     1441 ttttccttca acaccaaaaa tggctgtatt atcaaacata taagctactg aaccacttac
     1501 gcccatgttg ccgccgtttt tgctataagc tgcgcgaaca tcggatgccg tacgattcac
     1561 attatttgtc agtgcgtcta cgataatcat cgagccattt ggaccaaagc cttcatagcg
     1621 cagttctgaa tatgtttcat cgccagtgcc tttcgctttt tcgattgcac ggtcaataat
     1681 atgtttcggc acattgtatg tttttgcacg ttcaataaca aaacgtaatt tttggttggc
     1741 atgcggatct gggtcgcccg atttagccgc tacatatatt tcaattccaa attttgcata
     1801 gatacgacta tttgttttat cttttgacgc ttttttctct ttaatatttg cccatttacg
     1861 gcccatatta ccactcgctt tctaattgga gttttctcgt gtctctgtac tattataagt
     1921 gtaggaaacg aatttgttaa gtggaaattt agctatattc gttaaaaatg gatagatgtg
     1981 gcgtttttga ggttaaaaag ctggtttaaa aagaagtatg gaataaattc gcccgaactt
     2041 cttaacactt ctaactcttc tttagtcaca aaacgggcat ctgctacttc ttctttttgt
     2101 aaagttaagt cgctaagttc cacgtctttc gtaataaacc aataatcatc aaatcccgct
     2161 tcgaaatggt aactgaattt ggcacgggtg ttacttaaat caattgtaat ccctagttct
     2221 tcttgcactt ctcgttcagc agcttgcagg cttgtttcgc cttttagcgc agaacccgcc
     2281 gcagaaagat cccaataatt cggccaacct tctttatctt tttggcgctt ttggattaaa
     2341 agttgccctt tttcgttaaa aatacatacg tgaacaacca aatgaagttc tccgggcgct
     2401 agtttttcac cgcggatatg tgttttccca gttaattcac gattctcatt tagcaaatcc
     2461 cattcttcca ctaaaatcgg ctccttctaa tcattgactt gttttcatta tacaacaaag
     2521 ttaggatgat aaattttgca tatgtttttt tatcgtatcg agctcattta gcaacatatc
     2581 tcgcaatgaa tctggctgga tagctataat tttttcacca taacctagta aataattgat
     2641 aataaattgt tcctctcctt tatgataaaa accatgaata acatttttac cttgctgttg
     2701 gcgaagtttc atcgatggat aattttcttt aaaaaataag tcaacaccat ttgaggcaat
     2761 ttccacttca aaggtagtta catcagcttt tttattaaaa gaatcagcca ctctttttaa
     2821 ttcctccatt ttcttagctt caaaagtatc attttctttt agcgcaagga ttttatcaca
     2881 acgaaatacc tgcatccgtt tcgtctcgaa gttataactc gtcacatacc attgcccgta
     2941 tgccgaagat atattataaa attgaacaat atacgttttt tcagtcccat ttttatcata
     3001 attaatctga cacaccttct cctccatcgt aaactgcaaa ataacatcta gaaattcaca
     3061 ttgattatta tgctttatat agccgagact aaatacttct tctgtttttc gaagcatttc
     3121 gattttttca gctgaaagac aacgttcaaa tttcgttttt aatttttcca cgctcaaatg
     3181 aaaaggtgtc gtttcatagg cttttaaggt aagcatcgaa aaatagagcg caaatacctc
     3241 atcgatatta aaaacaatgg gcgagagtag ccgattacga agcacccgat aatgaccatt
     3301 tcgtccccgt tccgaatata tcggcatgcc tatttcttcc aaagactgta tatctcgaat
     3361 agcagtactg cgggaaacgc catattttgc cattatgtcg cttaattgaa acgaattttt
     3421 atcatttaaa aacaacatca tatcatttaa tcgctctgct tttctcatcg ccatctcttt
     3481 tcttttttca gattaaaagg tgtcactaat tgataccttt aaccattata ctataattag
     3541 aaaccaaagg agctaaaaaa tgatgaaaaa cttattttta acctcgtctt ttaaagatgt
     3601 tgtaccatta tttactgaat ttgaaagcaa tctccaagga aaaaccgtta cttttatccc
     3661 gacggctagc accgttgaag aagttgtttt ttatgtagaa gctggtaaaa aagcgctcga
     3721 ggatttaggg ttaattgttg aggaactaga tgtggcggca gaaaatctag aagaaataac
     3781 gatgacactc aaaaaaaatg attttatcta tgttactgga ggaaatactt tctttttact
     3841 acaagaatta aaacgaactg gtgcagataa attaatttta gaggaaattg ctaaaggaaa
     3901 attatatatt ggtgaatcag ccggtgcagt catcacgagt cctaatatat cgtatatcca
     3961 atccatggac agcgtaaaaa aagccactaa tttaaccaac tatgatgctt taaattt
//
LOCUS       DABQVC010000227         3981 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.227,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000227 DABQVC010000000
VERSION     DABQVC010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3981
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.227"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..478
                     /locus_tag="IBJ56_002612"
     CDS             <1..478
                     /locus_tag="IBJ56_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HAM3418853.1"
                     /translation="LSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLL
                     VVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSA
                     MFEPGERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLNERFTVAGK"
     gene            593..1294
                     /locus_tag="IBJ56_002613"
     CDS             593..1294
                     /locus_tag="IBJ56_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HAM3418854.1"
                     /translation="MVLLGALVNGLGILIGSVIGMKLHNIPERMKDTVMKGMGLSVIV
                     LGIQMAFKTSNSLIVILSICFGAVIGEWLNIDYHLNQLGHWIERKVGAKGKSNVSKGF
                     VTATLIFVIGAMGIIGALDSGIRGNHDVLYTKSVMDGFIALLLSTTLGWGVMLSAIPV
                     FLFEGIIALFATQINQFVPADLMALIIKELTATGGIMILAIGLNLLGLTKIRVANLVP
                     GILVVALIVTGLYYF"
     gene            complement(1329..2219)
                     /locus_tag="IBJ56_002614"
     CDS             complement(1329..2219)
                     /locus_tag="IBJ56_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HAM3418855.1"
                     /translation="MTTIKIALIQQKAVPNNKEANLKLAIKYIKEAHEKGADLVLFPE
                     MWSNGYAPPFEDAFNHPLATDFDNERTKWLNEAITEDSAYVLTLKELAKELQIGICAT
                     YLSKTEQKIQNTAIIIDRKGEIILDYAKVHTCDFSLEILLQSGEEFKVCEFDGIKLGV
                     MICYDREFPESARVLMLKGAEIILVPNACDINPARLNQLNSRAFENMVGVAMANYPGE
                     KWGRSTAFSPIVFDENGDYRDNTIIETEDVSEGIFIAEFNLDEIRTYRENETWGNAYR
                     KPQTYTDLISLDVEAPFKRN"
     gene            complement(2325..2975)
                     /locus_tag="IBJ56_002615"
     CDS             complement(2325..2975)
                     /locus_tag="IBJ56_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5105 domain-containing protein"
                     /protein_id="HAM3418856.1"
                     /translation="MKKGLFSMVLVLAMVLVLSACGASRVEPKKAGEITVNAVVYNKD
                     TDKVKDVYGEDGSKFEKEFETSFKESFISTFTASFSSDVNLDKQVDEFYDALRKQVNE
                     KTSYTTKVTNDDKESPEIQFAVKGLDMKGVQTELVEELTKAATADPSLATDDQKMAEK
                     TMEIYTKAVQNADAVSEAKTVTLKLKADPDDDSLWKMENDMAFMQELTTAFFMGGM"
     gene            3099..3575
                     /gene="ybaK"
                     /locus_tag="IBJ56_002616"
     CDS             3099..3575
                     /gene="ybaK"
                     /locus_tag="IBJ56_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HAM3418857.1"
                     /translation="MNKKTNACRILDKQKVNYELREYAWSEDSLDALHVAAETGNNPA
                     QIFKTLVLTGDKTGNIVACIPADKTLHLKHLAKISGNKKCELIAVDTLEKLTGYIRGG
                     CSPIGMKKLFPTFIDNSAESLDTILISAGKRGLQIELAPTDLKKVVRAEFAMIKEE"
     gene            3602..>3981
                     /locus_tag="IBJ56_002617"
     CDS             3602..>3981
                     /locus_tag="IBJ56_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HAM3418858.1"
                     /translation="MNLSVYVASAFSKNNKGGNKAGVVLNEPTLATAQKMAIAKQLGY
                     AETAFLTESNCADYKLEYFTPKEEVDLCGHATIGTFAILMHLNKIHKSQYTIETNSGV
                     LTITIKDGTIFMEQNQPTFYDTIPP"
BASE COUNT         1174 a          738 c          758 g         1311 t
ORIGIN      
        1 tctttcagat ttatcagacc aaaatgtcgt tgttgatgct tatggcatca gtccagacga
       61 agcagaaaaa catgtcactt cccttgatca cttaatttct gttttaaatg gaactgtgtc
      121 tccgcgctta cttgtcgttg gcggagcagc tagtctgcaa attgatgaag acggaaacac
      181 gcttttagag tccaagggcc tacgggaagc gccttactat ccaactgcac gtgcgcaagc
      241 gaaacaatta gagcatttaa aatcacatca agcagaattc agttggactt acattagccc
      301 ttctgccatg tttgaacccg gcgaacgcac tggagactat caaataggaa aagatcatct
      361 cttatttggt agcgatggta atagttttat cagtatggaa gactatgcaa ttgctgtttt
      421 agatgaaatt gaacgaccta atcacttaaa tgaacgcttt acagtagccg gaaaatagac
      481 ttaaagtcga aggatcactt tgatccttcg acttttttgt acaaaataaa actcccaatt
      541 ggcgaaaact tcctgtatac tattgctata tgtaaaaaaa gggaggaaga aaatggttct
      601 acttggtgcg ctagtgaatg ggcttgggat tttgattggc tctgttattg gcatgaaatt
      661 acataatatc cctgaacgta tgaaagacac ggtcatgaaa gggatgggtt tatccgttat
      721 cgtccttggc attcaaatgg catttaaaac gagcaactcg cttattgtca ttttaagtat
      781 ttgttttgga gccgttattg gggaatggct taatatagat tatcacctga atcagctcgg
      841 gcactggatt gaacgtaaag tcggtgccaa gggaaaaagt aatgtttcaa aaggctttgt
      901 gacagctaca cttattttcg tgattggtgc gatggggatt attggtgcgc ttgatagcgg
      961 cattcgcggc aatcatgatg tactttatac gaaatcggtg atggatggat ttatcgccct
     1021 acttcttagt acgacacttg gttggggcgt tatgctttct gcgattccag tgtttctctt
     1081 tgaaggcatt atcgcgttat tcgcaaccca gattaatcaa ttcgttccgg cagacctgat
     1141 ggcactaatt ataaaggaat taacggctac aggcgggatt atgattttgg caattggtct
     1201 aaacttgctt ggtttaacca agattcgggt cgcgaatctt gttccgggga ttttagtcgt
     1261 tgcgctgatt gttaccgggc tttattattt ttaaaagaaa aaacagagaa tcgctcatct
     1321 ctgttttttt aatttcgttt aaatggcgct tctacatcta aacttattaa atctgtatat
     1381 gtttgcggtt ttcggtaggc atttccccac gtttcatttt cccggtaagt tcgaatctcg
     1441 tctaaattaa attcagcaat aaaaatacct tctgaaacgt cctctgtttc aataatcgta
     1501 ttatcgcggt aatccccatt ttcatcaaaa acaatcgggg aaaaagcagt ggatctgccc
     1561 catttttcgc caggatagtt tgccatcgct acgccaacca tgttttcaaa agcacgagaa
     1621 tttagttgat taagtctggc tggatttata tcacaagcat ttggaacgag gataatttct
     1681 gcccctttta acatgagaac tctggcgctt tctggaaact cgcgatcata gcaaatcatg
     1741 acccccagct taataccatc aaactcacaa actttaaatt cctcgccact ttgtagtaat
     1801 atttctaaag aaaaatcaca cgtatggact ttggcatagt ctaaaattat ttctcctttt
     1861 cggtcaataa taatagcagt attttgtatt ttttgttccg ttttagacaa atacgtagcg
     1921 caaatgccaa tctgcaactc tttggcaagt tctttcagtg tcaaaacata cgcactgtct
     1981 tctgtgatag cttcatttaa ccacttggtt ctttcattat caaaatcagt agctagtgga
     2041 tgattaaaag catcttcaaa aggtggcgca taaccatttg accacatctc agggaaaagt
     2101 actaaatctg cccctttttc atgcgcttct tttatatatt taatggctaa tttcaaattg
     2161 gcttccttat tatttggtac tgctttttgt tggattaatg cgatttttat agtagtcata
     2221 tagcgcctcc cattagtaaa tcttcatgtt attataacat ttattcttgg aaacaaaaaa
     2281 acaccaacaa cccgaaagtt attggtgttt tgccatataa aagcttacat gccgcccata
     2341 aagaatgctg ttgttagttc ttgcatgaat gccatatcgt tttccatttt ccataaagaa
     2401 tcgtcatctg gatctgcttt taatttaagt gtaactgttt tagcctcaga tactgcatct
     2461 gcattttgaa cagctttcgt atagatttcc attgtttttt cagccatttt ttgatcatct
     2521 gttgcaagag atggatcagc tgttgctgct tttgttaatt cttcaactaa ttctgtttga
     2581 acgcctttca tatcaagccc tttaacagcg aattgaattt ctggactttc tttgtcgtca
     2641 tttgttactt tagtagtata cgaagttttt tcgtttactt gtttgcgaag tgcatcataa
     2701 aactcatcca cttgtttgtc taagtttaca tcactagaaa agcttgctgt aaatgtactg
     2761 ataaagcttt ctttaaaact agtttcaaat tctttttcga atttagaacc atcttcacca
     2821 tatacatctt ttactttatc cgtatctttg ttgtagacta cggcattaac tgtgatttct
     2881 cctgcttttt ttggttctac ccttgatgcg ccacatgcac ttaatacaag taccattgct
     2941 agcacaagaa ccatactaaa taaccctttt ttcattagta aatctccctt tcttatttga
     3001 attccacttc attgtacaga atgaaaaggg aaaagccaac tatttcacaa aaagtgtcat
     3061 aaattataca tatttctgaa ttaattgagg tgaaagactt gaataaaaag acaaatgcgt
     3121 gtcggatttt agataaacag aaggtaaact atgaattacg tgagtatgcc tggagcgagg
     3181 attcccttga tgcgcttcat gttgcggcag aaacagggaa taatcccgca cagattttta
     3241 aaacattagt cctgactggt gacaaaacag gaaatattgt agcgtgcatt cctgccgata
     3301 agactttgca tttaaaacat ttggcaaaga ttagcggtaa taaaaaatgt gaattgattg
     3361 cggtagatac gttagagaag ctgactggct atattcgcgg tggatgttcg ccgattggaa
     3421 tgaagaaatt atttccaacg tttattgata acagcgctga atcgcttgat actatactga
     3481 tttcggctgg aaaaagagga ttacaaatcg aactagcccc tactgatttg aaaaaagtag
     3541 tacgtgcgga gtttgcgatg attaaggaag aataaagttt ttacaaggga gttttatttt
     3601 tatgaattta tctgtttatg ttgcaagtgc atttagtaag aataataaag gtggaaataa
     3661 ggcgggtgtc gtattgaacg aaccaacact cgccactgct caaaaaatgg ccattgcaaa
     3721 acaattaggc tatgcggaaa ctgctttcct aactgaatct aactgtgctg attataaatt
     3781 agaatatttt actccgaaag aagaagtcga tttatgtggt catgcgacaa tcggcacttt
     3841 tgcgattttg atgcatttaa ataaaattca taagagccag tatacaattg aaacaaatag
     3901 cggtgtactg acgattacga taaaagatgg cactatcttc atggaacaaa atcaaccaac
     3961 tttttatgat acaattcccc c
//
LOCUS       DABQVC010000228         3865 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.228,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000228 DABQVC010000000
VERSION     DABQVC010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3865
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.228"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            140..1036
                     /locus_tag="IBJ56_002618"
     CDS             140..1036
                     /locus_tag="IBJ56_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rgg family transcriptional regulator"
                     /protein_id="HAM3418859.1"
                     /translation="MVGYGKTVRDIRTSKGIHQKDLYDNIISKSFAIEFEKGKHDITL
                     TLFEKILKRMNMDLDEFFYIHRELSVSAEKNYLCMNQERGNIYDLASLELLYNELSKH
                     NGELVEVWKAFVRSRIKLVEHLFKYHEFTVDVITPKDKCTIQKYLFSIDTWTLEELKI
                     CANSIYFFEEDLQIQFLNQVIKAIHSYKNYDRARRVLCTLLINTIEMFISRGQLSSAS
                     KLIILLDSLCLYNESAFYRNISHFLKGLVKMQNNHIQEGYNQAKKAIQIMNDLRFEEI
                     AYLYEILLDQFIRIKGIDIVKS"
     gene            complement(1033..1662)
                     /locus_tag="IBJ56_002619"
     CDS             complement(1033..1662)
                     /locus_tag="IBJ56_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HAM3418860.1"
                     /translation="MNVNEQKVLVLNNLVEHYGYQDWWEADNRLADWLSMILIQRTTE
                     KNAKQALANLAPYLDLDSLIEMDKAKLEELIYPAGFYKQKSIYIKALAEWFYGHGASL
                     DKFQTYSTEALRKELLGIKGVGEETADAMLLYIFERNVFIADLYARRLFTRLGFGEYT
                     TYAQMRDEFMPIIENIPHKLCKEWHSVIDVHGKHFGKDKSMNESWLLES"
     gene            complement(1705..2121)
                     /locus_tag="IBJ56_002620"
     CDS             complement(1705..2121)
                     /locus_tag="IBJ56_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418861.1"
                     /translation="MSIIARELTKAEEAEIIRLKEEGEMMLQTDGTPEERIEKIAEYL
                     KQTSPDTDLAEELGYILGSLYGEAVREKYEWRWLFVSENDLEGYAITSKEHGYTFMVH
                     DYFMQVIVQNKPDNSKMLFELMVDMTGNRNDFRMIG"
     gene            2241..2804
                     /locus_tag="IBJ56_002621"
     CDS             2241..2804
                     /locus_tag="IBJ56_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HAM3418862.1"
                     /translation="MEQNKEKLTKPTSEKNYFWPIMIISFVAVVVILLLFFSPIGYQG
                     AVHFDITIFPRMNAIFNSFTFVFLVIALWAIIKKKNIKMHRGFILAAFTSTLFFLVTY
                     LTFHYLSAETSTFGGTGIIRPIYFFILITHSFLAAIVVPLALFALVWGWTMQIEKHKK
                     IVRWTMPIWLYVSLTGVLVYLFMAPYY"
     gene            complement(2850..3557)
                     /locus_tag="IBJ56_002622"
     CDS             complement(2850..3557)
                     /locus_tag="IBJ56_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HAM3418863.1"
                     /translation="MKPIFAVGDVHGEITLLDELLENWDKEQERLLFVGDLIDRGENP
                     AAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSL
                     DKKMTPEGLAERVKEEAAELIDFIRNLPLYYEEGKYVFVHAGVDLTKKDWHDTEERDF
                     FWIREPFLFGQNKTGKVFIFGHTPVQNLHIDESSGIWVSEDKTRLDIDGGAVFGGELH
                     GVVVEEKVITKSFSVKK"
     gene            complement(3625..3834)
                     /locus_tag="IBJ56_002623"
     CDS             complement(3625..3834)
                     /locus_tag="IBJ56_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418864.1"
                     /translation="MAHENLRELEDQLIELRQTYQEVISETREFEDPQLQNGPINAAE
                     VRLSALRHEIAEVEKKIKKAESKTE"
BASE COUNT         1163 a          830 c          595 g         1277 t
ORIGIN      
        1 ttcataaagt cctaaaaata ggacttcttc cgccaaattt tctatgctac gatttaaaag
       61 taaaatggct gttaaactcc ttgcaacacc tcttagatgc agcccacatc taaattatga
      121 aacaaaagga gtaacttgaa tggtcgggta tggaaaaaca gtgagagata ttcgcacttc
      181 taaaggaata catcaaaaag atttatacga taatatcatt tccaaatcct tcgctatcga
      241 atttgaaaaa ggaaagcacg acatcacact aaccttattt gaaaaaattt taaaacggat
      301 gaatatggac ttggacgagt tcttttatat ccatagagaa ttgtcagtat cagctgagaa
      361 aaattattta tgcatgaatc aagaacgcgg aaatatatat gatcttgcga gtttggaact
      421 attatataac gagctttcta aacataatgg cgaattagtg gaggtctgga aagcatttgt
      481 tcgttcgcga attaaattgg tcgaacatct ctttaaatat catgaattta cagtagacgt
      541 gattacacct aaagataaat gcacgattca aaagtattta ttttcgattg atacgtggac
      601 acttgaagaa cttaagattt gcgctaactc catctacttt tttgaagaag atttacaaat
      661 tcaattttta aaccaggtca ttaaggccat tcactcttat aaaaactacg accgtgccag
      721 acgtgtttta tgtacccttt taattaatac gattgaaatg tttatttcgc gcggtcaact
      781 atcctctgct agtaaactca tcatcctatt agactcttta tgtctgtata acgaaagcgc
      841 cttttaccgg aatatctccc attttttaaa agggttagta aaaatgcaaa ataatcatat
      901 ccaagaagga tacaaccaag caaaaaaagc cattcaaatt atgaatgacc tccgttttga
      961 agagattgct tatttatatg aaattttgtt ggatcagttt atcagaataa aaggtataga
     1021 tattgttaag agctagcttt ctagcagcca agattcattc atacttttgt ctttcccaaa
     1081 atgttttccg tgaacatcaa tgactgagtg ccattcttta catagtttat gtggaatatt
     1141 ctctattatt ggcataaatt catcgcgcat ttgtgcataa gttgtatatt caccaaaacc
     1201 caacctagta aatagtcgtc tggcatataa gtcagcaata aacacattcc gctcaaaaat
     1261 atacagcaac attgcatccg ccgtttcttc cccgacaccc tttatgccta acaactcttt
     1321 tcgtaaagct tccgttgaat acgtctgaaa cttatctaaa ctagctccgt gaccatagaa
     1381 ccactcagca agtgctttaa tatagatact tttttgttta taaaaacccg ctggatagat
     1441 taattcttcc aatttcgctt tatccatttc aattaagcta tctaaatcta aatatggtgc
     1501 aagattcgct aatgcttgtt tggcattttt ctctgtcgta cgctggatta atatcataga
     1561 aagccaatca gccagacgat tatccgcttc ccaccaatct tgataaccat aatgctccac
     1621 taaattattt aaaactaaca ctttttgttc gtttacattc accttgcatc acctcaaaaa
     1681 ggaatcaaaa aacagttatt ctccttaacc aatcatccga aaatcatttc gattcccagt
     1741 catatcaacc atcaattcaa atagcatttt gctattatct ggcttattct gaacgattac
     1801 ttgcataaaa taatcatgca ccataaatgt atagccatgc tctttcgacg taatcgcgta
     1861 gccttctaaa tcattttctg agacaaacag ccagcgccac tcatactttt cacgcactgc
     1921 ctctccgtac aaagagccta aaatataacc aagctcttct gctaaatcag tgtctggcga
     1981 ggtttgtttt aagtactcag caattttctc gatgcgttct tctggagttc cgtctgtttg
     2041 gagcatcatt tcgccttctt cttttaaacg gataatttca gcttcttccg ctttcgttag
     2101 ttctcgtgca ataatcgaca ttagaaacac cctttcccca cccattataa ctcaaaagct
     2161 caatctttcg catccgatat gttcgtcatg tataatgaaa gaagtacagc aatttttata
     2221 tttagggggc tatttttttc atggaacaaa ataaagaaaa actcacaaaa ccgacatcag
     2281 aaaaaaacta tttttggccg ataatgatta tttcatttgt cgcggttgtg gttattttac
     2341 tactcttctt ctcaccaatc gggtatcaag gagcagtgca tttcgacatt actatcttcc
     2401 cgcgaatgaa cgccatcttt aatagtttta cctttgtatt tttagttatt gcactttggg
     2461 cgattataaa aaagaaaaac attaaaatgc accgtggctt cattttagca gcatttacat
     2521 ctacattatt cttcttagta acttacttaa cattccatta tctttcagca gaaacttcta
     2581 catttggcgg aactggaatt atccgtccta tctacttctt cattttaatt acacatagtt
     2641 tcttagcagc aatcgtggtt ccactagcgc tatttgcact tgtttggggc tggacaatgc
     2701 aaattgagaa acacaaaaaa attgttcgct ggaccatgcc aatttggctt tatgtcagct
     2761 taactggcgt actcgtttac ttatttatgg caccgtatta ttaaacaaaa aagcatcgaa
     2821 tgagcgcttc aaaagagccc attcgatgct tattttttta cagaaaaact tttcgtgatg
     2881 actttttctt ccacgacaac cccgtgaagt tctccgccaa aaaccgcgcc accatctata
     2941 tcgagcctcg ttttatcttc cgaaacccaa ataccagaac tttcatcaat atgtaaattt
     3001 tgtaccgggg tatgcccgaa aataaagact ttcccggttt tattctgtcc aaataagaaa
     3061 ggttcgcgaa tccagaaaaa atcacgctcc tcggtatcgt gccaatcttt tttcgtcaaa
     3121 tctacgcctg catgtacaaa tacatatttg ccttcttcat aatagagtgg caagttccgg
     3181 atgaaatcaa tgagttcagc agcttcttct tttactcgtt ccgcaagtcc ctccggcgtc
     3241 atttttttgt caagcgagtc cgcgattaag gattgaattg tttccatacc gccttgactt
     3301 aaataataat gcattttccc agaagggttt tcgagaaaat ctagtaacat ttgttcgtga
     3361 tttcctttta agacaatcgc tcccgtttgg tcggctaatg ctttcactct tctaagtact
     3421 gcagctgggt tttcgccgcg gtcaatcaaa tcccctacaa acaaaagccg ttcttgctct
     3481 ttatcccagt tttcgagtaa ttcatctaaa agcgtaatct ctccgtgtac atctcctaca
     3541 gcaaaaattg gcttcatgct tatacctcca gatctacgta aaagaaacgc ccctctgcaa
     3601 aataaacaaa tggacgcttt tttcttattc ggttttgctt tctgcttttt tgattttctt
     3661 ctctacttcg gcaatttcgt gacgtaatgc acttaatcta acctccgctg cattgattgg
     3721 tccattttgg agttgtgggt cttcaaactc tcgtgtttca ctgattacct cttgatatgt
     3781 ttgtcgcaat tcaatcaatt gatcttctag ttctcttaaa ttctcatggg ccatacgcgc
     3841 cacctccaaa ttaatcatac tacac
//
LOCUS       DABQVC010000229         3858 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.229,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000229 DABQVC010000000
VERSION     DABQVC010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3858
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.229"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1618
                     /locus_tag="IBJ56_002624"
     CDS             <1..1618
                     /locus_tag="IBJ56_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HAM3418865.1"
                     /translation="GLEDFASKKPTQLSGGQKQRVAIARSLANNPDMIIADEPTGALD
                     SVTSDEIIKLLKDLAAKGTTVIVVTHDLNIADQTDAVLRLADGEVISFERKKEVVQKV
                     THKNEKKLRLNWWATAKISFKSFFNRKFRNLLVALGTSIGIIAILLAFGLGNGVNQSL
                     SKIFGTTFSPNQITTYYKEDGGSKSPEPTTPLTSSEIKKIKQLYEDENITEIYERTTV
                     QGIKFEYDGEYLKGISGEMQEANFKPSRYEDLTVKDEYLLSGKMVTSDETGAVIPSSV
                     ARAILGKKDSDELTKSDGDKLIGKKITLVYAGRNSDTKNTVKTETIISGITNPSKEGF
                     ARGFDVSTKTMNDFIKTTGIEKPILSVDAFTKTTAEAEEIVEKYEDDKDWANYSITNA
                     NAFVDTFSQFTDIIVYLIAFIAGLSLAVAGVMIAIVLYIGVVERTREIGVFRAIGYRK
                     RHIRGLFMMEASYIIILANVLSSLVAMTIAKIASPILETKIGFEDMIHISFWNFLVTL
                     AITITIGFIFSIYPSNKAAKLDAAEALRSE"
     gene            1647..2150
                     /locus_tag="IBJ56_002625"
     CDS             1647..2150
                     /locus_tag="IBJ56_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418866.1"
                     /translation="MKKPLKISLIVVGIAVVIFAGVMLSYRFIKSMDVTENAEINKSA
                     TGDHVLLATQGSKFKDSVMDQVKKDMEGKNVHVSIIDTTKLDKVKADDYDKVVLFTTV
                     QSDDIPENVTTFMNDNKDKSIHIAVTADSGRWDDKPKDIDAISEASKAENKQDFVDDL
                     TKAIVAE"
     gene            2293..2493
                     /locus_tag="IBJ56_002626"
                     /pseudo
     CDS             2293..2493
                     /locus_tag="IBJ56_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464278.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2589..3425
                     /locus_tag="IBJ56_002627"
     CDS             2589..3425
                     /locus_tag="IBJ56_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3418867.1"
                     /translation="MSVLNIEGAKLSYQKVGQGPILIFIPGANGTGDIFLPLAEQLKT
                     SFSVVMVDRRGYGDSELTAAIPERASHAYDDYRVTRDAADIAALAKALSDEPVYILGS
                     SSGSIVAMHVLKNHPEVVKKIAFHEPPINTFLPDSEMWQEANEKIVQTALTKNMAEAM
                     QLFGETLHIAPIDAESMSKPAVTIDEVTKDSTTQQMKYWFTYEIRQYTSSNISLDDFK
                     PYVHQITLLNGTDSKGSFPQDVNAFIAKQLGLTIVDIPGGHLGYIQKPAGFAKVLLSI
                     WG"
     gene            3551..>3858
                     /locus_tag="IBJ56_002628"
     CDS             3551..>3858
                     /locus_tag="IBJ56_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HAM3418868.1"
                     /translation="MNIRTELQNSQLCEGLTEAQLNELMNKITVKEKHYKNNEILFYT
                     DEVTKVYILVKGNAAIAKNTSSGKRILGKNVTEPGELAGEIYYFSHRNPFWDYVIVLE
                     P"
BASE COUNT         1363 a          648 c          761 g         1086 t
ORIGIN      
        1 ggggctagaa gactttgcta gcaaaaaacc aacacaacta tctggtggac aaaagcaaag
       61 ggtagcgatt gcaaggtctc tcgctaataa tccagatatg attatagccg atgaaccaac
      121 tggagcactg gatagtgtta cttcagatga aattattaaa ctgcttaagg atttggccgc
      181 aaaagggaca accgtaatag ttgtaaccca tgatttaaac attgcagacc aaactgatgc
      241 ggtattacgc ctagcagatg gagaagtaat ttcatttgaa agaaaaaaag aagttgtcca
      301 aaaagttacc cacaaaaacg aaaaaaagtt aagactaaac tggtgggcta ctgcaaaaat
      361 ttcttttaaa agttttttca atagaaaatt ccgaaatttg ctcgtagcac ttggcacctc
      421 gattggaatt atcgctattt tattagcatt tgggcttgga aatggagtaa atcaaagtct
      481 ttcaaagatt tttgggacaa ctttttcacc caatcagatt acgacttatt ataaagaaga
      541 tggtggctcg aaatcacctg aacctaccac tccattaacg agtagtgaga tcaagaaaat
      601 taagcaactg tatgaagatg aaaatattac agaaatatat gaacgcacta ctgtccaagg
      661 cattaaattt gaatacgatg gcgaatactt gaaaggtatt tctggtgaaa tgcaagaagc
      721 caactttaag ccatcacgct atgaagattt aaccgtcaaa gatgagtatc ttctaagcgg
      781 gaaaatggtg acaagtgatg aaaccggagc agtcatcccg tcaagtgtag caagagctat
      841 tcttggaaaa aaggattctg atgaattaac aaaaagtgat ggtgataaac tcattggtaa
      901 aaaaataacc ttagtttatg ccggaagaaa cagtgacaca aaaaatacgg ttaaaacaga
      961 aacaattata tccggtatta ccaacccatc taaggaaggt tttgctagag gatttgatgt
     1021 ttccacaaaa acaatgaacg actttattaa aacaactggt attgaaaaac cgattttatc
     1081 tgtagatgca ttcacaaaaa cgacagcaga agcagaagaa atcgtggaga aatatgagga
     1141 tgacaaagac tgggcgaatt attcgattac taacgcgaat gctttcgtag atacatttag
     1201 ccagtttacc gatattattg tgtacttgat tgcctttatt gcaggtcttt cgcttgcagt
     1261 tgctggcgtg atgattgcta tcgtgcttta tatcggtgtg gtggaacgaa caagagaaat
     1321 cggtgtattc cgagcgattg gttatcgtaa acgccatatt cgcggacttt tcatgatgga
     1381 agcaagttat attattattt tagctaatgt gctatcaagt cttgtcgcca tgacaattgc
     1441 aaaaatagcc agtcccattt tagaaacgaa aattggcttt gaagatatga ttcacatttc
     1501 gttctggaat ttccttgtta cactcgcaat aacaattact attggcttta ttttctcgat
     1561 ttatccaagt aataaagcag caaaattaga tgcagcagaa gctttaagat cagaatgacc
     1621 caactaacag aaaagaggaa tttaacatga aaaaaccact aaaaatcagc ttaatcgtcg
     1681 taggaatcgc agtagtcata tttgcaggag tgatgctatc ctaccgtttt attaaatcaa
     1741 tggacgttac tgaaaatgcc gaaataaata aatcagctac aggagatcat gtattactgg
     1801 caactcaagg tagtaaattc aaagacagtg taatggacca agtgaaaaaa gacatggaag
     1861 gcaaaaacgt acatgtttcg attatcgata caacaaaact agacaaagta aaagcagatg
     1921 attatgacaa agttgttcta ttcaccacag tgcagtccga tgatattcca gaaaacgtaa
     1981 ccacttttat gaatgataat aaagataaaa gtatccatat tgcggtaaca gcagattctg
     2041 ggcgctggga tgataaaccg aaagatattg atgcaatttc cgaagcatcg aaagcagaaa
     2101 ataaacaaga tttcgtggac gatttgacaa aagcaattgt ggcggaataa gactaacaga
     2161 aacacccatc cttaggtagt ggctcataag aaagtatatg aacttattga tagtgacagc
     2221 taacaaacag ataatgtaaa aagcgtaata tgatggaatt agaattcctc gtattgcgct
     2281 tttatttttt gaattatttt tccttgttat aattttgccg catctcgtat ggtttgcgag
     2341 tttattgaga acatacaatt agttagtcaa tacattttta ttattgtcac ttatagtaat
     2401 acggcgccaa tgtgcgcctc taccgaacta tatgaacatt tccttatgag cacctaccat
     2461 ttggtgggtg ttttttggaa aataaatcca taatagcttt ctcctttcgt aaccacggtt
     2521 acagacgaaa tcacaaaagc tatctatact aaagttagat tttagataaa ttagaggaga
     2581 tggtcataat gagcgtttta aacattgaag gagcaaaatt atcgtatcag aaagtcggac
     2641 aaggtcctat tcttattttt ataccgggag caaatggaac tggagatatc tttttaccac
     2701 tggcagagca attgaaaaca tctttttctg ttgtaatggt agatcgtcgt gggtatgggg
     2761 acagtgagtt aacagcagct ataccggagc gcgctagtca tgcatatgat gattaccgag
     2821 tgactagaga tgctgctgat attgctgcac tcgcaaaagc gttaagcgac gagcctgttt
     2881 atattttagg gtcaagctct ggttcgattg ttgctatgca tgtcttgaaa aatcacccag
     2941 aagttgttaa aaaaatagcc tttcatgagc caccaatcaa tacattctta ccagattcgg
     3001 agatgtggca agaagcgaat gaaaagattg tacaaactgc cctaactaaa aatatggctg
     3061 aagcaatgca actttttggc gaaacacttc atattgcccc cattgacgca gaaagcatgt
     3121 cgaaaccagc cgtaacaata gacgaagtga caaaagattc aaccacgcaa caaatgaaat
     3181 actggttcac ttatgaaatc cgccaatata ctagctctaa tatatcttta gacgatttca
     3241 aaccatatgt tcatcagatt acgttactta atggtaccga ttcaaaaggc tcattcccac
     3301 aagatgttaa tgcctttata gccaaacagc tcggattaac tatcgtggat attccaggcg
     3361 gtcatttagg ttatattcaa aaaccagccg gatttgctaa agtacttttg tcaatctggg
     3421 gataaaaata aaaaattctg ctaaaggtta aatttagcag aatttttttg atgcagtcgt
     3481 aattgctatt taaaagaaag tggtctatgc ttatcgttaa aagtaacttt cattttagag
     3541 gagaagcaaa atgaacattc gaactgaatt acaaaatagc caattatgcg aaggattaac
     3601 agaagctcaa ttaaacgaac tgatgaataa aattacggtt aaagaaaagc actataaaaa
     3661 taatgagatt ttattttata cagacgaagt aacgaaagta tatattttag ttaaaggaaa
     3721 tgcggccatt gctaaaaata caagtagcgg taagcggatt ctaggtaaaa atgtcacaga
     3781 acctggagaa ctggctgggg agatttatta tttctcgcat cgcaatccat tttgggacta
     3841 tgtaatcgtg cttgaacc
//
LOCUS       DABQVC010000230         3673 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.230,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000230 DABQVC010000000
VERSION     DABQVC010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3673
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.230"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..658)
                     /gene="prfA"
                     /locus_tag="IBJ56_002629"
     CDS             complement(<1..658)
                     /gene="prfA"
                     /locus_tag="IBJ56_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="listeriolysin transcriptional regulator PrfA"
                     /protein_id="HAM3418869.1"
                     /translation="MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDG
                     ITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINEL
                     KELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPD
                     GIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYA
                     P"
     gene            complement(931..1884)
                     /gene="plcA"
                     /locus_tag="IBJ56_002630"
     CDS             complement(931..1884)
                     /gene="plcA"
                     /locus_tag="IBJ56_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylinositol-specific phospholipase C"
                     /protein_id="HAM3418870.1"
                     /translation="MYKNYLQRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVT
                     TKQWMSALPDTTSLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRY
                     IDIRAKDNLKIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYR
                     IQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSHKFGMQFG
                     ASNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALN
                     NKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN"
     gene            2127..>3673
                     /gene="hly"
                     /locus_tag="IBJ56_002631"
     CDS             2127..>3673
                     /gene="hly"
                     /locus_tag="IBJ56_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cholesterol-dependent cytolysin listeriolysin O"
                     /protein_id="HAM3418871.1"
                     /translation="MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENLISSMAPPAS
                     PPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVE
                     KKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPG
                     MTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLI
                     AKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTK
                     EQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVEL
                     TNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFL
                     KDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEINYDPEGNEIVQH
                     KNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRN
                     ISIWGTTL"
BASE COUNT         1207 a          594 c          691 g         1181 t
ORIGIN      
        1 taggagcata tcttttgaga taatcaagat tttgtacata aaagcatgaa tttttataca
       61 cgataacttt ctcttgcttt aatttagaaa taattctgct aacagctgag ctatgtgcga
      121 taccgcttga atagcctaac tcctgcattg ttaaattatc cagtgtaatc ttgatgccat
      181 caggagtttc tttaccatac acataggtca ggattaaaag ttgaccgcaa atagagccga
      241 gcttcccgtt aatcgaaaaa tcattaaatt tggctaggct gtatgaaact tgtttttgta
      301 gggtttggaa aacatagaaa aagtgcgtaa gattcttgct cagtagttct tttagttcgt
      361 ttattttgat aacgtatgcg gtagcctgtt cgctaatgac ttctaaatta taatagccaa
      421 ccgatgtttc tgtatcgata aagccagaca ttataacgaa agcaccttta tagtattgta
      481 aattcatgat ggtcccgttc tcactaatac ttgtaagctt tgtaatacca tcatatagga
      541 aaatacaata ttcttgtgga tcccattggt taaaaataag ttctttttta tgaaattgtt
      601 ttggttttat cccgttagtt tctaaatatt ttttgaattc ttctgcttga gcgttcatgt
      661 ctcatccccc aatcgttttt tatcgccctt ttttaaaata ccctaaaaac attaggcagt
      721 aacaacaatt gttagctgtt gaaagaaagt cacgctaaat aatatttttt acatatagga
      781 ttttattata caaattttga tttcgcaaaa gaaatgcata catatttaaa aacggattta
      841 tttagatgtt aaaattgaaa tagggttagt atatggttcc gatggttgct cggagatata
      901 ctaacccttt ttttgtagga ataatatatg ttagttgaat ttattgtttt ttatgatgtt
      961 tttgatagtt tgtttttcgg ggaagtccat gattagaatg cctaatcctc gaactttttc
     1021 cgatgttaag ttgagtacga actgctctac tttgttgttt aatgctgcag catactgacg
     1081 aggtgtgaat gttaatgaag tggcactaat atggttaaga aacagtttgt tgtccgcttt
     1141 agaagcttga taagcagtct ggacaatctc tttgaatttt gttttcacac tcggaccatt
     1201 gtagtcatct tgaattactt ggttggatgc gccgaactgc atgccgaatt tgtgtgaatt
     1261 aatgactaat ggcttttttg tgtggttctc tgaaagtaat aatatttttc cgcggacatc
     1321 ttttaatgta gggattttat tgctcgtgtc agttctggga gtagtgtaaa aataatcttt
     1381 gtaaatgttg attaatggtt ggatccgata atcaaaacta tcgttgctgt tttgctcgtc
     1441 ttttaaacgc ataataatgg tttcttttgg atttttcttt aaaaattgag taatcgtttc
     1501 taatacacct gaaagtgatg catttaaaaa aattggccca tggtaaattt tgagattgtc
     1561 ttttgctcta atatcgatgt accgtattcc tgcttctagt tgttggtaca atgacatcgt
     1621 ttgtgtttga gccagtggtt tggttaatgt ccacgtcatg tctccgttat agctcatcgt
     1681 atcatgtgta cctggtatag agagtgctgc taggctcgtt gtgtcaggta gagcggacat
     1741 ccattgcttt gtagttacag agttctttat tggcttattc cagttattaa gcgaatatgc
     1801 ttttccacct aatgggaaag taaaaaagca taaaataaaa cagagtacta aaactaatgt
     1861 gcgttgcaaa taattcttat acaaaatggc cccctccttt gattagtata ttcctatctt
     1921 aaagttactt ttatgtcgag tcattaacat ttgttaacga cgataaaggg acagcgggac
     1981 tagaataaag ctataaagca agcatataat attgcgtttc atctttagaa gcgaatttcg
     2041 ccaatattat aattatcaaa agagaggagg ggctaaacag tatttggcat tattaggtta
     2101 aaaaatgtag aaggagagtg aaacccatga aaaaaataat gctagttttt attacactta
     2161 tattagttag tctaccaatt gcgcaacaaa ctgaagcaaa ggatgcatct gcattcaata
     2221 aagaaaattt aatttcatcc atggcaccac cagcatctcc gcctgcaagt cctaagacgc
     2281 caatcgaaaa gaaacacgcg gatgaaatcg ataagtatat acaaggattg gattacaata
     2341 aaaacaatgt attagtatac cacggagatg cagtgacaaa tgtgccgcca agaaaaggtt
     2401 ataaagatgg aaatgaatat atcgttgtgg agaaaaagaa gaaatccatc aatcaaaata
     2461 atgcagatat ccaagttgtg aatgcaattt cgagcctaac atatccaggt gctctcgtga
     2521 aagcgaattc ggaattagta gaaaatcaac ccgatgttct tcctgtcaaa cgtgattcat
     2581 taacacttag cattgatttg ccaggaatga ctaatcaaga caataaaatt gttgtaaaaa
     2641 atgctactaa atcgaacgtt aacaacgcag taaatacatt agtggaaaga tggaatgaaa
     2701 aatatgctca agcttatcca aatgtaagtg caaaaattga ttatgatgac gaaatggctt
     2761 acagtgaatc acaattaatt gcaaaatttg gtacggcatt taaagctgta aataatagct
     2821 tgaatgtaaa cttcggcgca atcagtgaag ggaaaatgca agaagaagtc attagtttta
     2881 aacaaattta ctataacgtg aatgttaatg aacctacaag accttccaga tttttcggca
     2941 aagctgttac taaagagcag ttgcaagcgc ttggagtgaa tgcagaaaat cctcctgcat
     3001 atatctcaag tgtggcatat ggccgtcaag tttatttgaa attatcaact aattcccata
     3061 gtactaaagt aaaagctgct tttgacgctg ccgtaagtgg gaaatctgtc tcaggtgatg
     3121 tagaactgac aaatatcatc aaaaattctt ccttcaaagc cgtaatttac ggtggctccg
     3181 caaaagatga agttcaaatc atcgacggta acctcggaga cttacgagat attttgaaaa
     3241 aaggtgctac ttttaaccgg gaaacaccag gagttcccat tgcctataca acaaacttct
     3301 taaaagacaa tgaattagct gttattaaaa acaactcaga atatattgaa acaacttcaa
     3361 aagcttatac agatggaaaa atcaacatcg atcactctgg aggatacgtt gctcaattca
     3421 acatctcttg ggatgaaata aattatgatc ctgaaggtaa cgaaattgtt caacataaaa
     3481 actggagcga aaacaataaa agtaagctag ctcatttcac atcgtccatc tatttgccag
     3541 gtaacgcaag aaatattaat gtttacgcta aagaatgcac tggtttagct tgggaatggt
     3601 ggagaacggt aattgatgac cggaacctac cgcttgtgaa aaatagaaat atctccatct
     3661 ggggcactac act
//
LOCUS       DABQVC010000231         3620 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.231,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000231 DABQVC010000000
VERSION     DABQVC010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3620
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.231"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            86..340
                     /locus_tag="IBJ56_002632"
     CDS             86..340
                     /locus_tag="IBJ56_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HAM3418872.1"
                     /translation="MPNIKSAIKRVKTAETRNSRNASQRSAMRTAIKKFDEAAANNAD
                     NAKDLYVEASKKLDSAVSKGLIHKNNAARNKSRLAAKLAK"
     gene            complement(426..1457)
                     /gene="holA"
                     /locus_tag="IBJ56_002633"
     CDS             complement(426..1457)
                     /gene="holA"
                     /locus_tag="IBJ56_002633"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HAM3418873.1"
                     /translation="MLPEWKQIRSKKIMPVYLIIGTEDYIINETKQLLIDNILKGEEV
                     EFNYANLDLEEMPIEVVIQEAESMPFFGDKRLVMANNPLFLTTEKSKNKVEHDTAKLE
                     AYLNEPVDYSVLCFVARVEKLDERKKLTKLLKKTATVIEAKRPNENELKKWIEAKLSE
                     NNMQMSQEAITRLVELTSGQLTTAMNELQKLMLYCFDSKEITIQDVESLVVRSLEQNI
                     FLLLDKMIAMDISGALRIYYDLLKQKEEPIKILALISSQFRLLNQLKLLEQQGYSQQQ
                     AATKLKVHPFRVKLASKQAKNFTELQLNQALKRLAEIDLEMKTGFGDKEQKLEWFLFE
                     LQDNRQKRV"
     gene            complement(1525..3594)
                     /locus_tag="IBJ56_002634"
     CDS             complement(1525..3594)
                     /locus_tag="IBJ56_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HAM3418874.1"
                     /translation="MEKFNTSSFTATEYNGNCQIIDNLKIDGDSFQTFVRCEKEKFQL
                     SYKITTEEEQQKLKKLHYGQFISVSANIETPSVNRNQNQFNYQTYLKNQNVHYILRAS
                     NLAISSQFSPSFLMKLQNIRLKIITHLTEKISPTISPYCLALISGEKNGFSPEMYEVY
                     QQMGVVHLLAISGLHVNLLIGAIYFLLLKFGITRDRAITCLLVFLPFYVILTGANPPV
                     IRAATMTALLLLSEKYTTKWSSFSAICLSFILFFLLQPYIIREVGFQLSYAVSFGIIL
                     SSRQILTRQQNAFTKSLAISFISTIMSSAVMMYHFYSFSWVGIFFNLIYVPIFTMIIL
                     PGCLTVFVLSFFSTEIFHFPEAMLTFFIQLVEKLTYIFAKIPHQTIVTGRPNTVILVL
                     TIITIIIVFSQWQKKKFPLGIFICFCLLCYLASFNFSGKVSFIDVGQGDSILIQLPYN
                     QGNYLIDTGGQLPFEKEAWAKKRKPFTIGGSTLSPVLKSKGINSLDKVIITHSDADHM
                     EGLDDLQKNITIKELIFAKGAENKPIMKEALAAMPKVKQTIILAGAKWQIGENSFECL
                     YPDKAGEGGNDDSIVLKAVLDGKIWLFTGDLEANGEKGISEQPIKADILKVGHHGSKT
                     SSSKEFIQKVKPTFAVISCGLNNRFGHPHAETINTLETAGVTILRTDVQGEITYTFGK
                     GFEATLK"
BASE COUNT         1124 a          639 c          606 g         1251 t
ORIGIN      
        1 taatagcatt tgttctgata taatttaaaa aggtatgtta tatgaaataa atactacctc
       61 attagtttgg acggaggtga atggaatgcc aaatattaaa tctgcaatta aacgtgtaaa
      121 aactgctgaa actcgcaaca gccgtaatgc atctcaacgt tctgcaatgc gtactgctat
      181 caaaaaattt gacgaagcag ctgcaaacaa cgcggacaac gcgaaagatc tttacgtaga
      241 agcatcgaaa aaattagata gcgctgtgag caaaggattg attcacaaaa acaatgctgc
      301 tcgcaacaaa tctcgcttag ctgctaaatt agctaaataa taccgagttc ggtataaaac
      361 atcacacctt gtgtggtgtt ttttgtttgc aaaaatagct ttgtcttaaa tgacaaagct
      421 attttttata ctctcttttg ccgattatct tgtaattcga ataagaacca ttcgagtttc
      481 tgttctttat caccaaagcc agttttcatt tccaagtcga tttcagctaa tcgttttaaa
      541 gcttgattta attgtaattc cgtgaaattc ttcgcttgtt ttgatgctaa cttaacgcgg
      601 aatggatgca cttttagttt agtcgcagct tgttgttgcg aataaccttg ttgttctaat
      661 agctttaatt ggtttaacaa cctgaattga ctagaaatta atgccagtat cttgataggc
      721 tcttcttttt gttttaataa gtcgtaataa atccgaagtg ccccgctgat atccatagca
      781 atcatcttat caagtaacaa aaagatattt tgttcaagtg aacgtacaac taaagattct
      841 acatcctgaa tggtaatttc ttttgaatca aaacaataga gcattaattt ttgcagttca
      901 ttcatggcag ttgttagctg accactagtt aattccacca gtcgagtaat agcctcttgt
      961 gacatttgca tgttgttctc gcttaatttt gcttcaatcc attttttcaa ctcattctca
     1021 ttaggtcgtt ttgcctctat aacagtagct gttttcttga gtaacttagt aagcttttta
     1081 cgctcatcta acttttctac gcgcgctaca aagcataata cggaataatc cactggttca
     1141 ttgagataag cctctaattt tgcagtatca tgctccactt tgtttttact tttttcagtt
     1201 gttaaaaaaa gcggattatt ggccattact aaacgtttat caccgaaaaa aggcatgctt
     1261 tctgcttctt gaatgaccac ttctattggc atttcttcta aatctaaatt agcgtagtta
     1321 aattctactt cttcgccttt caaaatgtta tctattaaaa gttgcttcgt ttcgttaata
     1381 atataatctt ccgtaccaat gattaaatac accggcatta tttttttgga gcgtatctgt
     1441 ttccattctg gcagcattca tttcgcctcg cttcactctt atttctcttt ctatggtaaa
     1501 acatgaaata agagatagca agttttattt caaagtcgct tcaaagcctt ttccaaatgt
     1561 ataagttatt tccccttgta catctgttcg taaaattgtt actcctgctg tttctagtgt
     1621 attaatagtt tctgcgtgtg gatgaccaaa gcgattgttt aacccgcatg aaataactgc
     1681 aaaagtcggc ttcacttttt gaataaattc tttggaactg gaggtcttgc taccatgatg
     1741 ccctactttc aaaatatctg ctttgatagg ttgttctgat atgccctttt ctccgttcgc
     1801 ctctaaatca ccagtaaaaa gccatatttt accatctaat actgccttta atacaataga
     1861 gtcatcattt cctccttctc ctgctttatc gggatataag cattcgaaac tgttttcgcc
     1921 aatttgccac ttggccccgg ctaaaataat tgtctgtttc acttttggca tcgcagcgag
     1981 agcttctttc atgataggtt tattttctgc tcctttagca aaaataagct ctttaatagt
     2041 aatgtttttc tgtaaatcat caagtccttc catgtggtca gcatcgctat gtgtaataat
     2101 tactttatct aagctattaa ttccttttga ttttaacact gggctaagtg tacttccgcc
     2161 tattgtaaat ggttttcttt tcttagccca tgcttctttt tcaaatggaa gttggcctcc
     2221 agtatctatt aaataattcc cttgattgta tggtagttga attaaaatgc tatccccttg
     2281 ccccacatcg ataaaactaa cttttccact aaaattaaaa ctagctaaat aacataataa
     2341 acaaaaacaa atgaatatcc ctaaaggaaa ctttttcttt tgccactggc tgaagacgat
     2401 gatgatagtt ataatggtta gcactaatat aacggtgttt ggcctccctg ttacaatagt
     2461 ctgatgcgga atcttggcga aaatgtaggt taatttttct accaattgta taaagaatgt
     2521 aagcattgct tcaggaaaat gaaatatttc tgttgaaaaa aaagacagca caaacacagt
     2581 tagacaacct ggcaaaataa tcatcgtaaa aatgggcaca taaattaaat taaagaatat
     2641 ccctacccat gaaaatgagt aaaaatgata catcatgaca gctgaagaca tgatggttga
     2701 aatgaaggaa atagcaagtg acttagtaaa tgcgttctgc tgtctggtta gtatttgtct
     2761 tgacgataaa ataattccaa acgatactgc ataagatagt tgaaaaccta cttctctaat
     2821 gatatacggt tgcaagagga aaaacagaat aaaggacaaa caaatggcag aaaacgaact
     2881 ccatttagta gtatattttt ctgacaataa aagtaatgct gtcattgtag cagctcgtat
     2941 gactggcgga tttgctcctg taaggataac gtaaaatggt aagaaaacaa gtagacaagt
     3001 gatggctcta tcccttgtaa taccgaattt tagtaggaga aaatatattg cccctattaa
     3061 taaattcacg tgaagtccag agatagctag caaatggaca acacccattt gttgataaac
     3121 ttcatacatt tcgggggaaa agccgttttt ctctccacta attaatgcga gacaataagg
     3181 agaaatggtt ggagatattt tttcggttaa atgggtaatt attttcaaac gtatattttg
     3241 aagtttcatt aggaaagatg gtgagaattg actggaaata gcaagattac ttgctcgaag
     3301 tatatagtgt acattttggt tctttaaata agtttggtaa ttgaattgat tttgattgcg
     3361 gttgacggaa ggtgtttcta tatttgcaga aacagaaata aactgtccgt aatggagctt
     3421 ttttagtttt tgttgttcct cttccgttgt aattttataa ctcaattgaa atttttcttt
     3481 ttcgcagcgt acaaaagttt gaaaactatc tccatcgatt tttaaattat ctataatttg
     3541 acagttccca ttatattcag ttgctgtaaa agaggaagta ttgaattttt ctattacaaa
     3601 caaaaaacta taggttagaa
//
LOCUS       DABQVC010000232         3571 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.232,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000232 DABQVC010000000
VERSION     DABQVC010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3571
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.232"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..402
                     /locus_tag="IBJ56_002635"
     CDS             <1..402
                     /locus_tag="IBJ56_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase I"
                     /protein_id="HAM3418875.1"
                     /translation="ADEIIYVGAIYMGKVLGFDKFSKNYKTLSSKLIVISAGMYDPTR
                     KENTDNIELTVKENLQKTNFLLKDIFCLKGRLDTQQLRLKHKMLVNALYKSAKRKKES
                     DLNDNERDIVRAYEDDSQIDLNKLDGILDRV"
     gene            615..899
                     /locus_tag="IBJ56_002636"
     CDS             615..899
                     /locus_tag="IBJ56_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 family protein"
                     /protein_id="HAM3418876.1"
                     /translation="MREIKVSEVTFQQHATKLASESTGSYLPLKNGNMAYSRANSIDQ
                     LRSALIDLVGVVEDFQHVTKQDAGRLKKMGIAYAKQDQLMGQKMNQLEVR"
     gene            900..1268
                     /locus_tag="IBJ56_002637"
     CDS             900..1268
                     /locus_tag="IBJ56_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P"
                     /protein_id="HAM3418877.1"
                     /translation="MDSAHSKLEQQLQQIKKAKLTAETNVDQTRRKQNEQDWLEEDSH
                     QLTQEKLVLLDFLRSGWQGEEASGFHRFLEEQQHEESQAWRRDLQDKRSDLDTELQEN
                     KDRLHTLETKQATLQKEWSK"
     gene            1265..2350
                     /locus_tag="IBJ56_002638"
                     /pseudo
     CDS             1265..2350
                     /locus_tag="IBJ56_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463867.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2926..3342
                     /locus_tag="IBJ56_002639"
     CDS             2926..3342
                     /locus_tag="IBJ56_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418878.1"
                     /translation="MAVGIKVDFLWFSIGTSDFFHSFFSTVCVNLENMNWGSKFPVVM
                     KDMYAGYLSKEKVEIALKELKEIKLGLGEIPPEKIIWDAEDLDKTPPWGTHISKDITN
                     LAQYFVTTDGNNLISVLEEAMEEAIEEDVDLEIKDL"
BASE COUNT         1353 a          525 c          781 g          912 t
ORIGIN      
        1 gccgatgaaa tcatttatgt tggtgcgatc tatatgggaa aagtactcgg atttgataag
       61 ttttctaaaa attataaaac tttgtcaagt aaattaatcg ttatttcagc tggaatgtat
      121 gatccaacac gcaaggaaaa tacggataac atcgaattaa cggtcaaaga aaaccttcaa
      181 aaaactaatt ttttattaaa agacatattt tgtttaaaag ggagactaga tacacagcaa
      241 ctccgcttga aacataaaat gttagtcaat gctttatata agagtgcaaa aagaaaaaaa
      301 gagagtgact taaatgataa tgaaagagat atagtgcgtg cttatgaaga cgattcgcag
      361 attgatttga ataagttaga tggtatttta gatagagtgt agctgacaac caaaagaaaa
      421 tagcccaaaa gcctgtcttt aaagagaggc tttttggtat tgacttagtt agaagatgaa
      481 atgttaattt tttcacttaa aaagctgatt ttaagctgtt tttcaatgaa ttgtttcaca
      541 gaatgctcac aaaagaggtg tgctaccggt gatataatga gggggaagga tttacataga
      601 gaggaagcat gcagatgaga gaaataaaag ttagcgaagt aaccttccaa caacacgcaa
      661 ccaaattggc aagtgaaagt acgggaagtt atttgccact gaaaaacggg aacatggctt
      721 attccagagc caattcaatt gatcaattgc ggtcggcatt gattgatttg gtaggcgtag
      781 tggaggattt tcaacacgtg accaagcaag atgcgggccg attaaagaaa atgggtattg
      841 cctatgccaa acaagaccaa ttgatgggac aaaaaatgaa tcagttggag gtgcgttaaa
      901 tggatagcgc acacagcaag ctagaacaac aactccaaca aatcaaaaaa gcaaagctaa
      961 cggcagaaac gaatgtcgat caaacaagaa gaaaacaaaa tgaacaagat tggttagaag
     1021 aggacagcca ccaattaaca caagaaaaac tggtgttatt agacttttta cgcagtggct
     1081 ggcaaggcga agaagccagt ggttttcatc gttttttaga agagcaacaa cacgaagaat
     1141 ctcaggcttg gaggcgtgat ctccaggata aaagaagcga tttagacacg gaattacaag
     1201 aaaataagga caggctccac acgttagaaa ccaaacaagc cactttgcaa aaggagtgga
     1261 gcaagtgagc cggatagata tggcggaatt gaatgacttt ctccacggtt tgcgaagtag
     1321 taatgccgaa gccaaaacca tgatgaaaaa aatcaaagaa gcggcaatgg attacgccca
     1381 ggacaatcgt ttaaaagggg aagcagttag tacctccaaa cggtatttta cgagtaccta
     1441 tacaagtatt tgccagagca tcattgaggc actggatgaa agcgaagagc gactagcgca
     1501 atatattcgc gagttcggga gccaagtgga tagttcgcct tctgccagaa ttgatgcaga
     1561 aatcttacaa gaagcgatgg ccaaggttag ccagttacag cgaaaagaag aagacttgca
     1621 tcgacaatta accgcaccga acacgaagcc ggatatgcaa caagtctatg cagtgaaatc
     1681 aagaagtgtt catacacaat tattgaaggc aatcgaaaaa gagaacatcc tagaaagata
     1741 tttagctttt gaacaaagtc atggccagtt ttttagtgcg ttagacgaac tcattcgagc
     1801 aaccggacgt gcggtgcaag aattgttaca acaggttacg tttaatgaga aaacgggtac
     1861 ttactccgta ccaaccagtg ccaacaatag cttattacta atgaataaag cgctccaagc
     1921 agcccgaaaa gaaaatggta aagatccttt tccaaaagca tttgaagatt atactttgtt
     1981 tgcctatact tatgtgaatg accaaggcga aacggtgacg atgtggctgc tggaaagaga
     2041 tggcaaacga gcaaacaacc gagaactgca agacttccta gaagaacatg gccaagaatt
     2101 aaatcctctt ctttatacca atctttccgg agaagaacta gaacggaaag taaatgacag
     2161 ttggaaagaa ggcgtgaatt acttaaatgg tcaaaaagta tccggatttt ccggaggtgt
     2221 gttgaagtct tctgcctatg tggccagcgt aaaagatgcg atggatgatg ctggactgac
     2281 agaaatgaca ttaagtttag ggtttgggat tgcagcagct agaaataaaa caataatggt
     2341 aaagaaagta aaaaaaccag aagttggaaa aatttcagag cgcataaaaa atgatagtaa
     2401 aacagtccaa aagaatatag aattaagtaa gaaagttaga gaatcttcga aaatgaaaga
     2461 gtatttaaaa cgagaaaaag tcgttttaga gaaaattaag aaagccagtg gacttggaaa
     2521 gaatattgag gctgaaaata ttccaaagag accaagttgg cgtcaatctg aaattgatgc
     2581 agaattggat tataaaggat atggttctca aaaatctttt ttaaatggta aagaagtacc
     2641 ttatggaact aaaggaagct ctcgcccaga gttgtataga caaggacata gtatagaagt
     2701 taaaaattat aatgttcaaa ccagttctgg acaaaacaac ttaattaata acgtatctaa
     2761 acagataaaa gaaagactaa ctaatttacc acctggaaca gaacaaacta tcttaataga
     2821 tgttagaggt cagaacgtat cgaatgatat tctgaaaaat attagaagta aaattttaga
     2881 caaatctggt gttaaagtag aaataatatt taagaggtga ataatgtggc tgtaggtatt
     2941 aaagtagatt ttttatggtt ttctataggg actagtgatt tctttcattc atttttttca
     3001 actgtatgtg taaacttaga aaatatgaat tggggaagca aattccctgt tgtaatgaaa
     3061 gatatgtacg ctggttattt gtcaaaagaa aaagttgaaa ttgctctaaa ggaattgaaa
     3121 gaaattaaat taggattggg tgaaattcct cctgaaaaaa ttatatggga tgccgaagat
     3181 ttggacaaga ctccgccttg ggggacacat ataagtaagg atattactaa tttagctcaa
     3241 tattttgtaa caactgatgg aaacaatcta ataagtgtat tagaagaagc tatggaagaa
     3301 gctatagaag aagatgtgga tttagaaata aaagatttat aaatcaaaaa ggcaatttat
     3361 cacgagaatg gtaatcaagt gttaaagcct tgactagtac gctgtaacgc cctaacaaag
     3421 ttgctaatag ctagctggat tcattgtgaa aaaggagcaa ttgaattagg ttgttccttt
     3481 ttccacgcaa cgggattttt aaatgtaaag aagaaagaat atctttggag cgttattggt
     3541 tctattaagt ttaataatta tattagtgta a
//
LOCUS       DABQVC010000233         3556 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.233,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000233 DABQVC010000000
VERSION     DABQVC010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3556
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.233"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..140
                     /locus_tag="IBJ56_002640"
     CDS             <1..140
                     /locus_tag="IBJ56_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3418879.1"
                     /translation="IAQNACVKTIANIQRFIDALDVQDYDKCIAIIDQVIDAHVLVAY
                     R"
     gene            complement(181..1170)
                     /locus_tag="IBJ56_002641"
     CDS             complement(181..1170)
                     /locus_tag="IBJ56_002641"
                     /EC_number="1.3.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acryloyl-CoA reductase"
                     /protein_id="HAM3418880.1"
                     /translation="MKSFQALFIEKEADNTSLHFRETTIDNLPENEVTIEVHYSGINY
                     KDGLAVLPDGKIVSEYPFIPGIDASGVVVHSKSDQFQVGDEVIVTSYDFGVSYFGGYS
                     EFIRVPAAWVVPLPDGLSLKEAMILGTAGFTAALSVDALEFSGVTPDAGKIAVSGATG
                     GVGSLSSAILSKRGFSVVASSGKSDAKEFLEKFGVSEIVLREAFQPEKVRALDKQLYA
                     GAIDCVGGKPLSYLLTAVQYGGAVTTCGMSAGGKLDTTVFPFILRGIQLFGIDSVLCP
                     MPKRERIWNRLATDFKLTNLESLVTEVGFSELPEALHQVMNGGVTGRYLVKIK"
     gene            1349..2278
                     /locus_tag="IBJ56_002642"
     CDS             1349..2278
                     /locus_tag="IBJ56_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HAM3418881.1"
                     /translation="MGKALLIVNPSSGKEKGKTYQGKTEEVLKKRYDEVEVRLTEKAG
                     DATEFASWAAEQGFEAVIAMGGDGTLNETINGLAIHEKRPDFGFIPLGTVNDLARSVG
                     IPLKPEKAIQALEKAIAVPMDIGRIGDQYFMNVLAIGMIAQAVDQVSVEQKTKFGSVA
                     YFLEGLKAFNRNELLHFKIEYDEEVWEGEAALVVAGLTNSVGGMESWAPDAKIDDGYL
                     HIIILTKLGLLDAANMIPQLIRGNLKNSDGVVYIKTKKLTIDASGDDLSINVDGDPGP
                     GVPAEIEVLGSHLNILAPKKSSKKRFGPFILKK"
     gene            2318..2650
                     /locus_tag="IBJ56_002643"
     CDS             2318..2650
                     /locus_tag="IBJ56_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418882.1"
                     /translation="MEEELEVIHKGLANAKNGFKAVPGKLYLTATYIVHKPNDYFDEE
                     INIPLNRVAKIRGVRTKILGKELLSNILEIDMISGVKYQFVVNKQKKWLEAVSEVLES
                     RGESEKLG"
     gene            complement(2688..3554)
                     /locus_tag="IBJ56_002644"
     CDS             complement(2688..3554)
                     /locus_tag="IBJ56_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAM3418883.1"
                     /translation="MTILAFDLGGTAVKFGVLTTAGEILKKGKFKTPDNLDEMLQSLM
                     DVKANYDYTFQGAAFSCPGAVNNETGIIGGASAIPYIHNFPFKQLLEEKLGLPVTMEN
                     DANCAALAEVWIGAAKDKQDIIFMILGSGVGGAVIRGGKVHHGANLHGGEFGYMLMDR
                     DGRTLSELGTVVNAATRIAERLEVPKASIDGLRAFELRAEGNKIAKEELDTMFYYLAR
                     SIFNLQYALDPELVVIGGGVSERADFIQELTEYVAKVKASVPIATISPTVVGCHFGND
                     ANLIGATAFHLA"
BASE COUNT         1128 a          755 c          684 g          989 t
ORIGIN      
        1 agattgcaca aaacgcttgt gttaaaacaa tcgctaacat ccaacgtttt attgatgcgt
       61 tggatgtaca agattatgac aagtgcatag cgattattga tcaagtcatt gatgcccatg
      121 ttttagtcgc ttatcgttaa aaaagcattg tccttactac ttaaggacaa tgctttttat
      181 ttactttatt ttcactaaat atctaccagt cacgccaccg ttcattactt ggtgaagagc
      241 ttcaggtaac tcagaaaagc ccacttctgt tactaagctt tctaaattag ttaatttgaa
      301 atctgtcgca agtctattcc aaattcgttc tcgttttggc atcggacata aaactgaatc
      361 aataccgaat aattgaatac cacgcaaaat aaatggaaag acagttgtat ctaattttcc
      421 accagcagac ataccgcatg tagtaactgc cccgccatat tgaacagctg ttaggaggta
      481 tgaaagaggt tttccaccaa cacagtcaat ggccccggcg tatagttgtt tgtctaatgc
      541 gcgcactttt tcaggttgaa aagcttctct taaaactatt tcagatacac cgaatttttc
      601 taggaattcc tttgcatcgc tttttccaga agaagctaca acagagaagc ctcgtttgga
      661 aagtatggct gagcttaaac tacctacacc gcctgttgca ccacttacag cgatttttcc
      721 agcatcgggt gttacgccac taaattcaag cgcatcgacc gagagtgctg ctgtaaagcc
      781 cgctgtgcca agtatcatcg cttcttttaa tgatagacca tctggcaaag gaacaaccca
      841 agcagctgga acgcgaataa actcactata tccaccaaaa tagctcactc caaaatcata
      901 actagtgaca ataacctcat cgcctacttg aaattggtca gatttagaat ggacgaccac
      961 accacttgca tcaataccag gaataaaagg atactcgctc acaattttcc cgtctggaag
     1021 tacagccagt ccatctttgt agttaatacc agaataatgt acctcaatcg ttacttcatt
     1081 ttctggcaag ttatctatag tagtttctct aaaatgaagg gaagtattat ctgcttcttt
     1141 ttcaatgaaa agtgcttgaa atgatttcat tttttaaatt cctccacaac tcaattttgt
     1201 gttccccttc actttacgac ttttttcgcc attttacaag gctgtgactg gtacaaatcc
     1261 ccatttcaag gtaaactaga atagagaaga tgccgatatt ttgtgtaaat ttataaatag
     1321 aattttttgg caagaaaggg tgagtgcgat ggggaaggca ctattgattg tgaatccatc
     1381 atcaggtaaa gaaaaaggaa aaacttatca aggaaagaca gaagaagtac taaaaaaacg
     1441 ttatgatgag gtggaagttc gcctgactga aaaagcaggg gatgcaacag aatttgcttc
     1501 ctgggctgct gaacaaggct ttgaagcagt aattgcgatg ggcggagacg ggactttaaa
     1561 tgaaaccata aacggacttg caatccatga aaaacgacct gactttggct tcattccact
     1621 tggaacagtc aatgatttgg ctcgttcggt aggtatacca ttaaaacccg aaaaagcgat
     1681 tcaagcatta gaaaaagcta ttgcagtgcc gatggatatt ggccggattg gcgaccaata
     1741 ctttatgaac gtcctagcta tcggtatgat tgcgcaagct gtcgaccaag ttagcgtcga
     1801 acaaaaaacc aaatttggct ccgtagcata ctttttagaa ggcctgaaag catttaaccg
     1861 caatgaatta cttcatttta aaatcgaata tgacgaggaa gtttgggaag gggaagctgc
     1921 gctagttgtg gctggcttaa ctaattcagt tggtgggatg gaatcatggg cgccagatgc
     1981 aaaaattgac gatggctacc tgcatattat tattctaacg aaacttggct tgctcgatgc
     2041 agctaacatg atcccgcaat taattcgcgg taatttaaaa aacagtgacg gtgtagttta
     2101 tattaaaacc aagaaactta ccattgatgc aagtggagac gatttaagca tcaacgtcga
     2161 tggcgaccca ggtccaggtg taccagcaga aatcgaagtg cttggcagtc acttgaatat
     2221 tcttgcaccc aaaaaaagca gcaagaagcg cttcggccca ttcatactta aaaagtaacc
     2281 tacaataatt gtagaagaat aaggagatga aagctttatg gaagaagaat tagaagtcat
     2341 tcataaaggt cttgccaatg cgaaaaatgg ttttaaagca gtccccggaa aactttattt
     2401 aacagcaacg tatattgtcc acaaaccaaa tgattacttt gacgaagaaa tcaatattcc
     2461 gctgaatcga gtagcaaaaa ttcggggtgt ccgcaccaaa atccttggaa aagaattact
     2521 ctccaacatt ttagaaatag acatgatatc cggagtaaag taccaattcg ttgtaaacaa
     2581 acagaaaaag tggctggaag cagtttctga agtattagaa agccgcggtg aatcagaaaa
     2641 attaggatag aaagaagctg gcacgaaaaa agtgaccagc ttctttttta tgctaaatga
     2701 aatgcagttg caccaatgag attggcatca tttccaaagt gacagccaac aacagtaggg
     2761 ctaatagtcg caattggtac agacgctttt actttcgcca catattcggt caactcttga
     2821 ataaaatcag cccgctcact tacaccacca ccaatgacga ctagttcagg atcaagtgcg
     2881 tactgcaaat taaatatact tctcgcaaga taataaaaca tcgtatctag ctcttctttt
     2941 gcgattttat ttccttccgc acgtaattca aatgcccgaa gaccgtctat actagctttt
     3001 ggaacttcta aacgctcggc tattctcgtc gcagcattta cgactgtacc aagctcgcta
     3061 agtgtgcgtc cgtcgcggtc catcaacata taaccaaatt caccaccatg caaattggcc
     3121 ccgtgatgta ccttgccacc gcgaataact gcgccaccaa ctccacttcc aagaatcata
     3181 aaaataatat cttgcttgtc tttcgccgcg ccaatccaaa cctctgctaa agctgcacag
     3241 ttggcgtcat tttccatcgt aacaggaagc cccagttttt cttcaagtaa ttgtttaaaa
     3301 gggaaattat gtatgtaggg gatagcactc gcgccgccaa tgataccggt ttcattatta
     3361 accgcacctg gacaactaaa cgcagctcct tggaatgtat aatcgtaatt tgcttttaca
     3421 tccataagcg attgcagcat ttcatccaaa ttatccgggg ttttgaattt accttttttt
     3481 agaatttctc cagctgttgt taacacgcca aacttcactg ctgttccacc taaatcaaat
     3541 gcaagtatcg tcatta
//
LOCUS       DABQVC010000234         3453 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.234,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000234 DABQVC010000000
VERSION     DABQVC010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3453
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.234"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            51..1802
                     /locus_tag="IBJ56_002645"
     CDS             51..1802
                     /locus_tag="IBJ56_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HAM3418884.1"
                     /translation="MNDLKDIFKVLYQFKTDYLKVTLLLTILQAFVMGPFIYYFFFFI
                     LRVIGVPGITDANLGEVFSSPVAVIMLLILALLILLFIYYELGFFIMMAIYQLRGESY
                     TVFKIIQRLNVKAKYFLSYQAIYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELM
                     KTTTGTWLYVIAIAIIFYISARLVFALPYFIEDKSLKISGAIRKSWKYPQKNLFFMLL
                     KWVLIIVAIGFLVSIIATIMMLPLLLIEKITPGIAVFIAGITLTILQVIGFFAAGIFQ
                     GIIAQLLVKNAFAIEGQPALVTRNQFPHKKRFIIVAIIVFIIFSSFNIYTVNATLYEP
                     NTKIIAHRGDTMNAVENTVEAIESAAEAGADYSEIDIQETKDHQFVVFHDMTLRRLAG
                     SSKRVADMTLNELQQTKVKSGDYSSHIASFDEIIKTAKRNKIDLLVEVKLHGGESSDM
                     VERLVTLLKKEKVTDKYLVQSLDQPVIEKIEQADPTLETGIILALNIGNLPKTSADFI
                     VLEDFSINKRLLTQARQNNKRVFVWTVNKEKLMQMYLRKNVDGIITNYPKKAIELRES
                     FNENDSLRSRIENRLGF"
     gene            complement(1841..2335)
                     /locus_tag="IBJ56_002646"
     CDS             complement(1841..2335)
                     /locus_tag="IBJ56_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5067 domain-containing protein"
                     /protein_id="HAM3418885.1"
                     /translation="MKKLKSVLLLMGIVTFALALTACGGTEDKASTEKTETAKAETKK
                     KANQNELGDYKVEILSSEVVKDFEGNNAIAIKTKFTNNSKENISFMVAIDQQAFQNGT
                     QLETTVSADASMGGSEKDVQPGGTLEVTELYKLQDTQNKVDVEAKELISFSKNAVKKS
                     FELK"
     gene            complement(2415..>3453)
                     /locus_tag="IBJ56_002647"
     CDS             complement(2415..>3453)
                     /locus_tag="IBJ56_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HAM3418886.1"
                     /translation="ELFVRKIIPSSFAPVIEQLKDLSSKYLPKIEVMIPNGNQLIVYE
                     EYINGKNLADLMKANATFDADEVTRLMLMLSDALTELHANAIIHRDIKPSNIMISSDG
                     VLKLIDFDASRVFEVGKNQDTVNLGTIGYAAPEQYGYSQTDVRSDIYSIGVLMLELLL
                     GKNTLPDKEHATSLEKIAMQAAAFDPEQRYQSIQDFRTAVKNDSLGPSYVSELSDFTE
                     LDNFSTESDWENVSADYEKDFVPWYKHIPGFRTGTPWKMIVGVLGYIFLLFGLFTPPT
                     EGVKMSPIVNFFNNFFLIVPAFVIFTNLCGIWSKLPLLKSSSPGTRKAGIVIYIIVCV
                     SIYGIYNEIFS"
BASE COUNT         1090 a          587 c          631 g         1145 t
ORIGIN      
        1 cttggataaa ccataaagcc ttgaaaatta aacaaaaaag ggagaagcaa atgaatgatt
       61 taaaagacat ttttaaagta ttgtatcagt ttaagacaga ttatctcaaa gtaaccttat
      121 tattaacaat cttacaggca tttgtgatgg ggccatttat ttattatttc tttttcttta
      181 ttctccgggt catcggagtg ccaggaatta cagatgccaa tcttggagaa gttttttcga
      241 gtcctgttgc cgttattatg ctgctgattt tagctttact cattttactg tttatatatt
      301 atgaactggg tttctttata atgatggcaa tttatcaatt gcggggagaa agctataccg
      361 ttttcaaaat catacaaaga ctcaatgtaa aagcgaaata ctttcttagt tatcaagcaa
      421 tttattttct gctatatttc tttttacttt tgcccattgc aggattatct ttaccaatta
      481 cgataacaga aaacctctat ttaccacatt ttattacgga tgaattaatg aaaacgacga
      541 cgggaacgtg gctgtatgtt attgcaattg cgattatttt ctatattagc gccagacttg
      601 tgtttgcttt gccctatttc attgaagaca aatcactaaa aataagtggg gctatccgaa
      661 aaagttggaa atacccgcaa aaaaacttat ttttcatgtt actaaaatgg gttttaataa
      721 ttgttgcgat tggcttttta gtatcgatta tcgcaacgat tatgatgttg ccgcttctct
      781 taatagaaaa aataactccg ggaattgcgg tgtttatagc gggtattact ttaaccatac
      841 tacaagtgat aggtttcttt gccgctggaa tttttcaagg aatcattgcg caattattag
      901 tgaagaacgc ctttgctata gaaggacaac cagcacttgt gacgcgcaac cagttcccgc
      961 ataaaaagcg atttattatt gtagcgataa tcgttttcat tatttttagt agttttaata
     1021 tttatacagt gaatgcgact ttatatgaac ctaacacgaa aataatcgcc catcgaggtg
     1081 atacaatgaa tgctgttgaa aatacggtgg aagccattga atcagctgct gaggctgggg
     1141 cagattacag cgaaattgat attcaagaaa ccaaagatca tcagtttgtc gttttccatg
     1201 atatgacact gagaagactt gctggcagtt ctaaacgagt agcagatatg actttaaacg
     1261 agttgcagca aactaaagtg aagagtggcg actattcgtc tcatatagct tctttcgatg
     1321 aaattattaa gacggcgaaa aggaataaga tagatttact cgtggaagtg aagttgcatg
     1381 gcggggaatc tagcgatatg gtggaacgac ttgtcacatt gttaaagaaa gaaaaagtaa
     1441 ccgataaata tctagtccaa tcgttggacc aaccagttat cgaaaaaata gaacaagctg
     1501 accctacgct tgaaactggc atcatattag cgcttaatat tggaaactta ccaaaaacat
     1561 ctgccgattt tattgtttta gaagattttt ctattaataa acgattactt acacaagcca
     1621 gacaaaataa taaaagggtg tttgtttgga cggtaaataa agaaaaacta atgcaaatgt
     1681 atttgcgaaa gaatgtagat ggaatcatta ccaattatcc taaaaaggcg atagagctta
     1741 gggaatcttt taatgaaaat gattctttgc gaagtcgtat tgaaaatagg ttaggctttt
     1801 aaataaaaag ccgcaaacaa gcactgtttg cggctgattt ttattttagt tcaaatgatt
     1861 ttttaacagc gtttttgctg aaactaatta attcttttgc ttctacatcg actttatttt
     1921 gtgtatcttg tagtttataa agctcagtta cttctaaagt tccaccaggt tgtacgtctt
     1981 tttcagagcc gcccatacta gcatcagctg atacggttgt ttctaactga gtgccatttt
     2041 gaaaagcttg ttgatcaata gctaccataa aagaaatgtt ttctttgctg ttatttgtga
     2101 atttagtttt aattgcgatg gcattgttac cttcaaaatc cttaactact tccgaactaa
     2161 gaatttctac tttataatct ccaagttcat tttgatttgc tttctttttc gtctcggctt
     2221 tagctgtttc tgttttttct gtacttgctt tatcctctgt cccaccacat gcagttaatg
     2281 ctagggcaaa agtaacaatc cccattaata gtaaaacgct tttcaatttt ttcattttct
     2341 tctctccttc attttttatc tgtctctatt agaccatgtg gagagaataa aagtcctatg
     2401 cagtgggcat aggactagga aaagatttca ttataaatac cataaatact tacacaaacg
     2461 ataatataaa tgacaatacc tgcttttctt gtaccaggag aggatgattt aagtaaaggt
     2521 aatttggacc aaataccaca aagattagta aaaatgacaa aagcaggaac gataagaaag
     2581 aaattgttaa aaaagtttac tattggcgac attttgacgc cctcggttgg cggggtgaat
     2641 aaaccaaata gcaagaatat ataacctaat acgccgacaa tcattttcca aggtgtccct
     2701 gttctaaaac cgggaatatg tttataccat ggaacaaagt ccttttcgta atccgcggat
     2761 acattttccc agtcagattc agtagaaaaa ttatctaact cagtaaaatc ggataattca
     2821 gagacgtagc ttgggccaag tgagtcgttt ttgacggctg tcctgaaatc ttgaatggat
     2881 tgataacgct gttcaggatc aaaggcagct gcttgcatcg caattttttc aagcgaagtg
     2941 gcatgttctt tatctggtaa agtatttttt cctaataaaa gttcgagcat aagaacaccg
     3001 atactgtata tgtccgacct cacgtctgtt tgtgaatagc cgtattgttc gggagcagcg
     3061 taaccgattg tgccgaggtt gacagtgtct tgatttttac cgacttcaaa tacacgggaa
     3121 gcatcaaaat caattaattt taatacgccg tcgctagata tcataatgtt tgatggctta
     3181 atatctcggt gaataatcgc attagcgtgt aattctgtaa gtgcatcaga tagcatcagc
     3241 attaaccgcg taacttcatc cgcatcaaac gtagcatttg ctttcattaa atcagccaaa
     3301 ttttttccat ttatgtattc ttcataaaca attaattgat tgccatttgg aatcatcact
     3361 tcgatttttg gcaaatattt actagataaa tctttaagct gttcgatcac aggggcaaaa
     3421 ctgcttggaa ttattttacg gacaaataat tct
//
LOCUS       DABQVC010000235         3432 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.235,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000235 DABQVC010000000
VERSION     DABQVC010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3432
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.235"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..326
                     /locus_tag="IBJ56_002648"
     CDS             <1..326
                     /locus_tag="IBJ56_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3418887.1"
                     /translation="KKFIRDLYKREEETSTGIEDGFGIPHAKSKYVKEPLIVFVHSGI
                     INDYFGLDDSPIECSFLIGVPKKATDVHLQILSELSRKLMNKEFREKLKNSKNKTEII
                     TILSN"
     gene            340..1734
                     /locus_tag="IBJ56_002649"
     CDS             340..1734
                     /locus_tag="IBJ56_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HAM3418888.1"
                     /translation="MKIVGVTACPTGIAHTYMSAEKLTITAEALGYEVKIETQGAKVE
                     NVLTKEDIATADYVILAVDKEIDTSRFAGKKIKKVSTSRAIKEADVVIEETISGKGLI
                     SLEAKSSDISSEQPSKASLYNHFMNGVNYMLPFVIAGGILIAISFAFGIDASNPDSDS
                     YNALAAAFSKIGGDTAFGLMVPALAAGIAVSVAGRAGFAPGLVAGTLATVGGSGFLGG
                     MIGGILAGYVAHFFANKVNVTKSLASIYQLIVVPLLGITIVGLAMVFIIDTPIAWVLN
                     ALTGWLNGLGETSGVVFGLLIGVMMAADMGGPINKSISTFSIGLMSAGVTAPIAACMA
                     AGMVPPLGLALATLLFKNKFTKEEKTAGNSCWVLGASYITEGAIPFAVADPLRVIPSL
                     MLGSATAAAISMGAGVTSMAPHGGIWVMFIPNVINHLFIYLLAIAAGTVVTAISVGLL
                     KTPLNKRKNKEEMI"
     gene            1734..2594
                     /locus_tag="IBJ56_002650"
     CDS             1734..2594
                     /locus_tag="IBJ56_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketose-bisphosphate aldolase"
                     /protein_id="HAM3418889.1"
                     /translation="MLYTMKDLLAVGKEHQFAVPAFNICSFDMLKSIMEEVEANNAPV
                     ILEIHPDEIEYLGDNFVATVREYAHKSKVPVVIHMDHGGTIKDVMRAIRNGYTSVMID
                     ASRASYEENVALTKQVVELAHKVGVSVEAELGTIGNNGSAEGGADTIIYTDPDQAEDF
                     VQRTGIDTLAVAIGTAHGLYPKDKKPELNMPLLKELNKRLDIPFVLHGGSGNPDKEVS
                     ESVQYGVRKVNLSSDLKSVFFEEVRRVLVDNPAMYEPNQVYPSANEKVKEVVRHKLHI
                     LNTTGQRDKY"
     gene            2651..3421
                     /locus_tag="IBJ56_002651"
     CDS             2651..3421
                     /locus_tag="IBJ56_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAM3418890.1"
                     /translation="MLSTAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVE
                     LEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNETSKIRIADIAKSLIRDDMVIFL
                     DSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
                     AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGH
                     KFMHQSLACHDIDYLITDFKLDPDVEEQFKTHQITCLY"
BASE COUNT         1092 a          552 c          794 g          994 t
ORIGIN      
        1 caaaaaaatt tatacgtgac ttatataaac gagaagaaga aacttctact ggaattgaag
       61 atggttttgg catccctcat gcaaaaagta aatatgtaaa agaaccattg attgtttttg
      121 ttcattctgg cattataaat gattattttg gattagatga ttcaccgatt gaatgtagtt
      181 ttcttattgg tgttccgaaa aaagccacag atgttcactt gcaaatccta agtgaactat
      241 cgaggaagtt aatgaacaaa gaatttcgtg aaaaattaaa aaattccaaa aacaaaacgg
      301 aaattataac aattttatcg aactaaggag gcgtttcaca tgaaaatagt tggtgttact
      361 gcttgtccca ctggtattgc gcatacgtat atgtctgccg agaaattaac tataacggca
      421 gaagcgcttg gttacgaagt gaaaatcgag acacaaggag ctaaggttga aaatgtttta
      481 acgaaggaag acatcgcgac tgctgattat gtcattttag cagtcgataa agaaatagat
      541 acatcaaggt tcgctggaaa gaaaattaaa aaagtatcca cttccagagc gattaaagag
      601 gctgatgtgg ttattgagga aactatttct ggtaaagggt taatcagttt ggaggcgaaa
      661 agttcggata taagttcgga acaaccgtca aaagcaagtt tatacaatca ctttatgaat
      721 ggtgttaact atatgttgcc atttgtcata gctggcggga ttttaattgc tattagtttt
      781 gcttttggaa ttgatgcctc aaaccctgac tctgattcgt ataacgcact tgcagctgca
      841 ttttcaaaaa ttggtgggga tactgcattt ggtttaatgg ttccagcact tgcagcaggg
      901 atagcggttt ctgtggctgg tcgagcagga tttgcgcccg ggcttgtggc agggacactg
      961 gcgactgttg gtggatcagg atttctaggc ggtatgattg gtggtatttt ggctggttac
     1021 gtggcacatt tctttgctaa taaagtcaat gtcactaaat cacttgcttc gatttatcaa
     1081 ttgattgttg taccgctttt agggattacg attgttggtt tggcgatggt atttattatt
     1141 gatacaccaa tcgcttgggt tttaaatgca ctcacaggtt ggttgaatgg gcttggtgag
     1201 acatctggcg tcgtatttgg actactcatt ggtgtgatga tggcagcaga tatgggtggg
     1261 ccaattaata aatctatttc aaccttttca attgggttaa tgtcagcagg tgtaacggcg
     1321 ccgattgcgg cttgtatggc ggctggaatg gttccgccac ttggattagc actcgcaaca
     1381 ctattattta aaaacaaatt tacaaaagaa gaaaaaacag cggggaattc ttgttgggtg
     1441 ttaggtgcat cttatattac tgaaggagca attcctttcg cagttgctga tccgctccgg
     1501 gttatcccaa gtttgatgtt aggttctgca acagctgctg caatttcgat gggagctggt
     1561 gtaacttcga tggcgcctca cggtgggatt tgggtgatgt tcattccaaa tgtaattaac
     1621 catttattta tctacttact agcaattgca gcaggcacag tcgtgacagc aatttctgtc
     1681 ggactattaa aaaccccatt aaacaagcga aaaaataaag aggagatgat ataatgttat
     1741 atacaatgaa agatctttta gcagtaggaa aagagcatca atttgcggta ccagcattta
     1801 atatctgtag ttttgatatg ttaaagtcga taatggagga agtggaggca aataatgctc
     1861 ctgtaatttt agaaattcat ccggatgaaa tagagtatct cggtgataac tttgttgcaa
     1921 cagtcagaga atacgcacat aaaagtaagg tgccggtcgt tattcatatg gaccacggtg
     1981 gaacaatcaa agatgtgatg cgggcaatta gaaatggcta tacttctgtc atgattgatg
     2041 cttcaagagc cagttatgaa gagaacgtgg cgttgactaa gcaagtggtt gaacttgcgc
     2101 ataaagtcgg tgtttctgtt gaagcggaac ttggaacaat cgggaacaat ggttcagcag
     2161 aaggcggggc ggataccatc atatatactg accctgacca agcagaagat ttcgtacaga
     2221 gaactggcat tgatacgcta gccgtagcta ttggaacggc gcatgggtta taccctaaag
     2281 ataaaaaacc agaactgaat atgcctcttt taaaagaatt aaataaacgc ttggatattc
     2341 cgtttgtact tcatggtggt tcgggaaatc cagataaaga agtcagtgaa tctgtacagt
     2401 acggtgttag gaaagtaaac cttagttcag atctgaaaag tgtgtttttt gaagaagttc
     2461 gccgcgtttt agtggacaat cctgcgatgt atgaaccaaa tcaagtgtac ccatcagcaa
     2521 atgaaaaagt aaaagaagtt gtaagacata aattacacat tttaaatact actggtcaaa
     2581 gagataaata ctaataagaa gggtagaagc gctagttata gtgcttttgc cctttaagga
     2641 gtggaggaac atgttaagca cagcgaagga acggcaacta aaaatcgtta accggctaaa
     2701 agtggaacaa tttatgcgga ttattgattt agtggagctt gtcaactaca gcgaagccac
     2761 tgttaaacgg gatttagtag aattagaaaa agaaggactt gtgagacgaa caagaggcgg
     2821 ggcaatgatt atcgataata aaaaaatcga tttgccttat ttaatgaaaa tgaatgagcg
     2881 aagtaatgaa acgagtaaaa taagaattgc cgatattgcc aaatcactga ttcgcgatga
     2941 tatggtgatt ttcttagact ctagctcaac atcactgcat ttaatcgacg ttttaagtaa
     3001 atttgatgga ctgcaaatta ttacaaacgg ggtcatgacg gcttccatgc tatcagaatt
     3061 tacaaatgca agagttagta ttttaggagg atcgatttta acgaagcgat atacggtgaa
     3121 cggcgcaaaa gcatacaatg acgctttaac ttataatgcg gatattgctt ttgtttcatg
     3181 ccgggggatc gactatgaca aaggtgcaac ggaaacacat gaaggtgaag cactcatcaa
     3241 acaagctttc aggcgccagt caagttcgct cgttttactt gtcaccgaag aaaaagtagg
     3301 acacaagttt atgcaccaaa gcttagcatg tcatgatatt gactatttaa ttacggactt
     3361 caaactggac ccagatgtag aggaacagtt caaaacccat caaattactt gtttgtatta
     3421 gattttatac tt
//
LOCUS       DABQVC010000236         3422 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.236,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000236 DABQVC010000000
VERSION     DABQVC010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3422
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.236"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            7..195
                     /locus_tag="IBJ56_002652"
     CDS             7..195
                     /locus_tag="IBJ56_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HAM3418891.1"
                     /translation="MSELKIENAMLKRRLLALGCDEGCDICIKQKGLFGGPCTFETKG
                     QYISIRQCDACAIMVERR"
     gene            192..2186
                     /gene="feoB"
                     /locus_tag="IBJ56_002653"
     CDS             192..2186
                     /gene="feoB"
                     /locus_tag="IBJ56_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HAM3418892.1"
                     /translation="MSQNTYCLLGNPNTGKTSLFNALTGSYEYVGNWSGVTVEKKVGT
                     LRSKTGKLIDLPGIYDLNPISRDETVVTRFLLEEKFDCMLNIVDSSQIERNLNLTIQL
                     LEFGAPVVMGLNMIDVAAGRGIHLNIQNLAKQLRIPILPVVARSGKGTDDILSTLSEK
                     HVAPAIPLVLPYGEPAEKAITEIQALIKDMIPAKQSRWLAVQFLSKNEVTEEFLATCP
                     ALEQLKHIRTELEIALDGKLENHFHQVRVNYIHDICLTSVEYTRHSDIPLSDKLDKIF
                     THKFFGIPIFLGIMWLIFQITFTWVGAPLSDLLDGFIGGPLTDSVTSFLTAIGASGFI
                     TDLVADGIIAGVGGVLVFVPQILVIFFFISVLEDSGYMARIAVVMDRVMEIFGLNGKA
                     FIPMIIGFGCNVPGIMAARSIEESKERTLTILVSPFMSCSARLPVYALFVGVFFEKHQ
                     ALVVLSLYVIGILMALIVTKILSKTLLKKDNSVFVVELPPYRLPSLKTLWRSTWEKGK
                     GFLRKAGTFIFAGSVIIWLLNYAGPSGLDVPMGESFLAIIGGMLAPLLVPLGFGTWQA
                     GATLIPGFLAKEVVVSTMAIIYAVGESSLGSIVSTFYTPLSAYCFMLFILLYIPCLAT
                     VAAIRKETSSWKWSAFAVAYPLVTAYVLVFLVYQIGSLFV"
     gene            2193..2375
                     /locus_tag="IBJ56_002654"
     CDS             2193..2375
                     /locus_tag="IBJ56_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HAM3418893.1"
                     /translation="MFFVSIMVNLLLGGAIFGYTIYAIIKFIKRSKQGKCGGCELEKA
                     CNCESDEHTNLDHIFK"
     gene            complement(2405..3259)
                     /locus_tag="IBJ56_002655"
     CDS             complement(2405..3259)
                     /locus_tag="IBJ56_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009929107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HAM3418894.1"
                     /translation="MALKIKWIIAISMIIVLLVVGWFLGTRLTVKKYEVSSAKIEKEI
                     KLVQLSDLHFSEFGDKNENLLHKVANLNPDVIAITGDLFDRQGDSVPKELIKKLTKIA
                     PVYFSPGNHEYDVKNAYEDDYKPFLEKIGVVNLEDQTATIDVGGQKFQMSGLRSSANL
                     DYDYPYYKEGLAEIKKQQDSTYYQILLSHMPDYFELYVENGFDLTLSGHTHGGIVRIP
                     YTNIGAIAPGPQRTLLPDYVYGEHSKDGKTMIISAGLGAGSLHQKAFPRLGNPYEIVA
                     VTIKPATN"
BASE COUNT          967 a          717 c          629 g         1109 t
ORIGIN      
        1 gttcgcatct cagaattaaa aattgagaac gccatgctta aacgtcgctt acttgcactt
       61 ggttgcgatg aaggttgtga tatttgtatc aaacaaaaag gactatttgg tggtccctgt
      121 acttttgaaa caaaagggca atatatcagc attagacaat gtgatgcttg cgccattatg
      181 gtggaacgca gatgagtcaa aatacatatt gcttactcgg aaacccaaat accgggaaaa
      241 cttccttatt taatgcatta acaggctctt atgaatatgt aggaaactgg agcggagtca
      301 ccgtcgaaaa gaaagtcggt acgttgcgct caaaaactgg aaaattaatt gatttacccg
      361 gtatttatga cttaaatccg atttctcgtg atgaaacagt tgtcactaga tttttactgg
      421 aagagaaatt cgattgtatg ttaaatattg ttgattcctc gcaaattgag cgaaatctaa
      481 atttaaccat tcagctactt gagtttggtg cacctgttgt gatgggactg aatatgattg
      541 atgtagctgc cggtcgcggt attcatctaa acatccagaa ccttgccaaa caattgcgca
      601 ttccaatttt gccagtagtt gctcgttccg gaaaaggtac agacgatatt ttatctactt
      661 tgtcagaaaa acacgtagct cccgcgattc cacttgtttt accatacggg gaacccgcgg
      721 aaaaagcgat tactgaaatc caagctttaa tcaaagacat gattcctgcc aaacaatctc
      781 gctggcttgc tgttcaattt ctttctaaaa atgaagtcac agaagaattt ttagcgacat
      841 gccctgcttt ggagcaatta aaacatatcc gcacagaact tgaaattgcg cttgacggta
      901 aactagaaaa tcattttcac caagttcgtg tgaattacat tcatgatatt tgtttaacct
      961 cggtcgaata tacgcgccat tcggatattc cactatccga taaactcgat aaaattttca
     1021 cccacaagtt ttttggcatt cctatttttc ttggtattat gtggttgatt ttccaaataa
     1081 cctttacttg ggttggcgca ccgctatctg atttgctcga tggttttatt ggcgggccgc
     1141 tgacggactc cgtaacatcc tttttaacag ccattggcgc atctggattt atcactgatt
     1201 tggttgcaga tggtatcatc gctggtgtcg gtggcgtgct tgtctttgtt cctcaaatat
     1261 tggttatttt cttcttcatt tctgtcttag aagattctgg atacatggct agaatagcgg
     1321 ttgttatgga ccgcgtaatg gaaatcttcg gcttaaatgg gaaagctttt attccgatga
     1381 ttatcggctt tggttgtaat gtccctggaa ttatggcggc gcgctcgatt gaagaatcca
     1441 aagaacgaac actaactatt ctcgtttcac catttatgtc ctgctccgcg cgacttcctg
     1501 tttatgctct ttttgtaggc gtgtttttcg agaaacatca ggcgctcgta gtactttcac
     1561 tttacgttat cggtatttta atggcactta tcgtcactaa aattttatca aaaactttac
     1621 ttaaaaaaga taattccgta ttcgtcgtcg aactaccacc ctaccgcctc ccatcgctta
     1681 aaactttatg gcgcagcacg tgggaaaaag gaaaaggatt cttgcgtaaa gcgggaacat
     1741 tcattttcgc aggttcggtt atcatttggt tgctaaacta cgctggtcca tctggactcg
     1801 acgtaccaat gggcgaaagt ttcttagcaa ttatcggtgg catgctcgcc ccactactcg
     1861 ttccgcttgg tttcggaaca tggcaagcgg gagccaccct tatacctggt tttctagcaa
     1921 aagaagtagt cgtttccaca atggcaatta tttatgcagt tggagaaagt tcgcttggca
     1981 gcatcgttag cactttctat acaccacttt cggcttattg ctttatgttg ttcatcttgc
     2041 tttacatccc atgtttagcg acagttgccg ccattcgtaa agaaactagt tcgtggaaat
     2101 ggagcgcatt tgctgtcgct tatccacttg ttacagccta cgtgttagta tttctcgttt
     2161 atcaaattgg tagtctattc gtttaagaga ggatgttttt cgtgagtata atggttaatt
     2221 tattacttgg tggcgcaatt ttcggctaca ctatttacgc gattattaaa tttatcaaac
     2281 gcagtaaaca aggaaaatgt ggcggctgtg aacttgaaaa agcctgtaat tgcgagtcag
     2341 acgaacatac aaatttggat catatcttta aatagaaaaa agagccttga tgaaggctct
     2401 tttttcagtt cgtcgctggc tttatcgtca ccgcaacaat ttcatatgga tttcctaacc
     2461 tcggaaatgc tttttgatga agacttcccg caccaagtcc agctgaaatt atcattgtct
     2521 ttccatcttt tgaatgttct ccgtatacat aatccggcaa aagtgttcgc tgcggtcctg
     2581 gagcaatcgc accaatattc gtatacggaa tacgcacaat ccctccatgc gtgtggccac
     2641 ttaaagttaa atcaaaacca ttctccacat aaagctcaaa atagtccggc atatgcgaca
     2701 aaagaatttg ataatacgtt gaatcttgct gcttttttat ttctgctagt ccttctttat
     2761 aataaggata gtcataatct aaattcgcac tactccgcaa tccagacatt tgaaatttct
     2821 gtcctcccac gtcgatagta gcagtttgat cttctaagtt aactacacca attttttcta
     2881 aaaatggctt gtaatcgtcc tcataggcat ttttaacatc atattcatgg ttccccggcg
     2941 aaaaataaac cggcgcaatc ttcgtaagct ttttaataag ctctttagga acactatccc
     3001 cttgcctatc aaaaagatct ccagtaattg caatcacatc tggatttaaa tttgccactt
     3061 tatgtaacaa attttcattc ttatcgccaa attcactaaa atgcaaatcc gataattgca
     3121 ctagtttaat ttctttttca attttagcag aactcacttc atattttttc accgttagcc
     3181 tagtccccaa aaaccatcct acaactaaaa gtacaataat catactgatt gctataatcc
     3241 actttatctt taaagccatt ttctcacctc tatgttgcta tttccattta ttatcaatat
     3301 tttgtcatcc attatatgtt acccctatca ttataaccta gattaagtgt tgactcaaaa
     3361 tgcacgaaaa aaccacccca attctaacaa aagtagaaaa gggaaaaaat atcaggttga
     3421 ca
//
LOCUS       DABQVC010000237         3377 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.237,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000237 DABQVC010000000
VERSION     DABQVC010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3377
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.237"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..627)
                     /locus_tag="IBJ56_002656"
     CDS             complement(<1..627)
                     /locus_tag="IBJ56_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAM3418895.1"
                     /translation="MDFFEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAEC
                     FVSTTTFLRFVRKLGFTGYSEFTTVLKFTLLGHTELKPSPFVVEQSDYREEYLKNIIE
                     SVRVLEPSKIKKITKKLVSKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYR
                     QAVLPHIGKDDLVFILTYGGHDIELIQTAQKLKSRNETPMLISITGADN"
     gene            complement(644..1753)
                     /gene="aguA"
                     /locus_tag="IBJ56_002657"
     CDS             complement(644..1753)
                     /gene="aguA"
                     /locus_tag="IBJ56_002657"
                     /EC_number="3.5.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase"
                     /protein_id="HAM3418896.1"
                     /translation="MGQLKGLPVEDGFRMPGEYEPHIGCFMIWPERPDNWRLGGKPAQ
                     QNYKEVAVAISNFEPVTMFVSPNQYKNARKELPDTIRVIEMSNDDAWIRDYGPSFLVN
                     DKGEMRGVDWGFNAWGGLLDGLYFPWDKDNQIAKKVCDLERLDYYSQNDFILEGCSIH
                     VDGEGTLVTTEECLLSEGRNPNLTKIEIEQTLKKYFHVQKVIWLKHGFYLDETNGHVD
                     NIFNFVAPGEVVLSWTDNKSDPQYEISRECYDILANQTDAKGRTFIIHKLHCPDPVLI
                     TQTESEGVEAINGTFPRQAGDRLAASYVNYYTANGAIIFPLFDDPKDKDAQELLEQLY
                     PDRKIVGIKAREILLGGGNIHCITQHLPDKSTIRE"
     gene            complement(1854..2795)
                     /gene="arcC"
                     /locus_tag="IBJ56_002658"
     CDS             complement(1854..2795)
                     /gene="arcC"
                     /locus_tag="IBJ56_002658"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HAM3418897.1"
                     /translation="MNQKIVVALGGNAILSSDASAEAQQSALEKTAEYLVQFIENGDD
                     LIISHGNGPQVGNLMLQQHAGASEKNPAMPLDTCVAMTQGSIGYWMQNALDKAFLKHG
                     LDKVAVSLITQVVVDKDDPAFKKPTKPIGPFLTKEEAEKEMAETGAIFLEDAGRGYRK
                     VVPSPRPLSIKEHQIIKQLVDSGVVTISAGGGGVSVVENGLDLSGVETVIDKDFASEK
                     LAELISADLLVILTGVENVYINYNQPNQKKLERVTVSELEKYIDEKQFAAGSMLPKIE
                     AATAFVKERPNAKAIITSLENIGAMLEHGAGTVIIAG"
     gene            complement(2808..>3377)
                     /locus_tag="IBJ56_002659"
     CDS             complement(2808..>3377)
                     /locus_tag="IBJ56_002659"
                     /EC_number="3.5.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013727152.1"
                     /note="catalyzes the formation of carbamoylputrescine from
                     agmatine in the arginine decarboxylase pathway of
                     putrescine biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase"
                     /protein_id="HAM3418898.1"
                     /translation="SEGRNPQLSKQQIEMVLKEYLNLEKIIWLKRGIYLDETNGHVDN
                     IFNYVRPGVVALAWTDDETDPQYEISKECFDILSNETDAKGRKLEVHKINVPKPILIT
                     DEESKGVDAVEGTLPREEGDRLAASYINYYTANGGVVFPLFGDPNDELAREKLRQLYP
                     NCEVVGVKAREILLGGGNIHCITQQVPRG"
BASE COUNT          951 a          766 c          527 g         1133 t
ORIGIN      
        1 attatcagcc ccagtaatcg aaatcaacat gggcgtttca tttctgcttt ttagtttttg
       61 ggcagtttgg attaattcaa tgtcatgtcc accgtacgta aggataaaaa ctaaatcatc
      121 tttaccaata tgcggcaata cagcttggcg atactgataa tcttcaggaa actctaccaa
      181 aaatccgctc attgtataga gatatttgat gtatttcgca gcatgtttac tcagcccttt
      241 agcaaaaaaa taaattcgcg gtttgcttac tagttttttg gtgattttct tgattttact
      301 tggttctaaa actcggacag attcaataat gtttttcaaa tattcttcac gataatccga
      361 ctgttctacg acaaatgggg acggttttag ctctgtatgc ccaagtaaag tgaactttaa
      421 gactgttgta aactcgctat aaccagtaaa tccaagcttt cttacaaaac gcaaaaaagt
      481 tgttgttgaa acaaagcatt ctgcagaaac ttctcgaata ctttgatttt taattaaatt
      541 catattctta acgacatagt caaataaaat ccgctcattc cgagttaggg aagctacagt
      601 cttactggaa atttcgaaaa agtccatact tcaagtctcc tttttattca cgtatcgtac
      661 ttttatcagg gagatgttgc gtgatacagt gaatatttcc gccgcctagc aaaatctcac
      721 gtgctttaat ccccacaatt tttctatcag gatataactg ttcaagtaat tcctgcgcat
      781 ctttatcttt tggatcatca aacaatggga aaataatagc accattcgct gtatagtaat
      841 ttacataact agcagctaat cgatctccag cctgtctagg gaaagttcca ttaatcgcct
      901 ccacaccttc gctctctgtt tgcgtaataa gtactggatc cggacaatgt agtttatgta
      961 ttataaaagt tcttccctta gcatctgttt ggttagctaa aatatcatag cattctcttg
     1021 aaatttcata ctgcggatca cttttgttat ccgtccacga taaaacaact tcgccaggtg
     1081 ccacaaagtt aaaaatgtta tctacatgtc cgtttgtttc gtcaagatag aagccatgct
     1141 taagccaaat taccttttgt acatggaaat atttttttaa agtttgttcg atttctattt
     1201 tggttaaatt cggattcctt ccttctgata acagacactc ttctgtcgta accagcgtcc
     1261 cttcaccgtc tacatgaatg gaacaacctt ctaaaataaa atcattctgt gagtagtaat
     1321 caagtcgctc taaatcacaa actttttttg caatttgatt atctttatcc cacggaaaat
     1381 atagaccatc aagaagacca ccccaagcat taaatcccca gtcaacacca cgcatttctc
     1441 ccttatcatt caccaaaaaa cttggtccat aatcgcgtat ccacgcatca tcattactca
     1501 tttcgataac acgaatggta tccggaagtt ctttacgagc atttttatat tgatttggtg
     1561 atacaaacat agtgactggc tcaaaatttg aaatagcgac tgcaacttct ttatagtttt
     1621 gttgcgctgg ctttccacca agccgccagt tatcaggtct ttctggccaa atcatgaaac
     1681 agccaatatg aggttcgtat tctcctggca ttctgaatcc gtcctctacc ggcaaccctt
     1741 tcagttgtcc catcctcatt ctcctcctat tacttcataa ccacattata catgaaatac
     1801 tgttttacaa gacaaaaacc gagtaacaag tacccggatt tcgccctatt ctactagccc
     1861 gcaataatca ctgtccctgc cccatgttct agcatggcgc caatattttc aagcgaggtg
     1921 attattgctt tggcatttgg tctttctttg acaaaagctg ttgctgcttc gattttgggc
     1981 aacatacttc ctgctgcaaa ttgtttctca tcaatatatt tttctaattc tgaaacggta
     2041 actctttcaa gtttcttttg atttggctga ttataattga tataaacatt ttccacccct
     2101 gttaaaataa ccaacaaatc cgcactaatt agttctgcaa gtttttcaga agcaaaatct
     2161 ttatcgatta cggtctctac cccagataaa tcaaggccat tttcaacgac cgaaactccg
     2221 cctccaccag cagaaatagt cacaacacca ctatcaacca attgtttaat aatttgatgt
     2281 tctttaatac taagcgggcg aggagatggt acaactttac ggtaacctcg accagcgtcc
     2341 tcaagaaata ttgcaccagt ttctgccatt tccttttcag cctcttcttt agtaagaaaa
     2401 ggcccaattg gtttggttgg ttttttaaaa gcaggatcat ctttatccac aacaacttgt
     2461 gtaattaatg aaaccgctac tttatctagc ccgtgtttta aaaatgcttt atctaacgca
     2521 ttttgcatcc agtagccaat actcccttgc gtcattgcga cacacgtatc aagcggcatt
     2581 gctggattct tttcagaagc tcccgcatgt tgttgcagca tcaggttgcc tacttgcggt
     2641 ccatttccat gcgaaataat taaatcatcc ccgttttcga taaattgcac caaatattcg
     2701 gctgtttttt caagtgcact ttgttgcgct tcagcactgg catcactcga taaaattgca
     2761 tttccaccta gtgccacgac tattttttga ttcatgctgt tcactcctta tcctcttggc
     2821 acctgttgag taatacagtg aatatttccg ccaccaagta aaatttctct tgctttcaca
     2881 ccaaccactt cacagtttgg ataaagttga cgtaattttt cgcgggcaag ttcatcattt
     2941 ggatccccaa atagcgggaa aaccactcca ccattcgctg tgtagtaatt aatatagctt
     3001 gctgccagtc ggtcgccttc ttcccgtggt agcgttcctt ccacagcatc tacaccttta
     3061 ctttcttcat cggtaattaa aattggtttt ggtacattta ttttatgcac ttctaatttg
     3121 cgcccttttg catcggtttc attcgataaa atatcaaagc attctttaga aatttcatac
     3181 tgcggatcag tttcatcatc tgtccacgcg agcgctacta cacctgggcg tacataattg
     3241 aaaatattat ctacatgacc attcgtttca tctaaataaa ttcctcgttt taaccaaata
     3301 attttttcta aatttaaata ctcttttaaa accatttcga tttgctgttt tgaaagttgt
     3361 ggattgcgac cttctga
//
LOCUS       DABQVC010000238         3349 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.238,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000238 DABQVC010000000
VERSION     DABQVC010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3349
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.238"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            149..1624
                     /locus_tag="IBJ56_002660"
     CDS             149..1624
                     /locus_tag="IBJ56_002660"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HAM3418899.1"
                     /translation="MTDELEQKALITIFGGTGDLANRKLYPSLYHLYSKGSLGDNFAV
                     IGTARREWSNDFFRDKVKESIKDIDGSEKDADAFASHFYYQSHDVTNKESYVTLKDLS
                     DELDAKYELGGNRLFYLAMAPNFFGTIASRIKSEGFVDTDGFHRLIIEKPFGHDLASA
                     EELNNSLRQAFKEDEIYRIDHYLGKEMIQNISVIRFANSIIESLWNNRYIDNIQVTLT
                     EVLGVEDRGRYYDESGALRDMVQNHILQIVSLLAMEPPINLTTREIRHEKVRALRSLR
                     VFEGKEVHQNFIRGQYGPGEVGGKELKGYRQEDNVDPHSNTETFVAAKLEIDNFRWAG
                     VPFYIRTGKRLAKKTTQIAIQFKDVPLNLFGQQQSLGGNVLVIHIQPDEGITLHLNVK
                     EPGQGMVTMPVNLNYIHSSPDGMNTPEAYEKLILDCLRGDATYFSHWDEVSLSWNFID
                     HIADVWTNTKDHFPNYKSGSMGPKEADDLIQRDGFQWFPID"
     gene            1743..2174
                     /locus_tag="IBJ56_002661"
     CDS             1743..2174
                     /locus_tag="IBJ56_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1694 domain-containing protein"
                     /protein_id="HAM3418900.1"
                     /translation="MAENIDDYLEKGMYGAKEINPAEKKKYLGTYRERVLVALTKEEV
                     LTQEYLPELEKAILENSDSKLLLNGLLHYNSLRPYIKLAEKCKHEFSIVTRLEGETDI
                     YLVLACQKAVNKEDIHLYKEAEVEQEEEPVSLLEKVRKLFN"
     gene            2206..2343
                     /locus_tag="IBJ56_002662"
     CDS             2206..2343
                     /locus_tag="IBJ56_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418901.1"
                     /translation="MLHIITLSLAILMALQTIYFFIRKNVNMGVMFLLITAALLLLST
                     I"
     gene            complement(2326..2811)
                     /locus_tag="IBJ56_002663"
     CDS             complement(2326..2811)
                     /locus_tag="IBJ56_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418902.1"
                     /translation="MGISNKTNLIIIASGKPKIWDKSPDIGPVKASEVYTGTFHRLSR
                     AYAEQFANEYLILSPKYGFLRPDDIISKTYDVRFTMKGTSADTIQLEELKEQWQKLQI
                     NPTEPIPMLGGKKFRGLLTSITDGKQVFNFPLDGASGIGVMQRNLKQAIETGIPLNRT
                     E"
     gene            complement(2784..3311)
                     /locus_tag="IBJ56_002664"
     CDS             complement(2784..3311)
                     /locus_tag="IBJ56_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3418903.1"
                     /translation="MDNLETDRLILINYTLEMIQATINGTEALEKASGYHVSPDWPGI
                     DFFFYLPYVLENVKKDDRMIKWTRLVILKEENKIIGEIGGQGNPDETGEIEIGYSIVP
                     DYQNKGYMSEALIGMIAWLEEQPAIHRIFARSYEQNMASIQVLKHNHFVHIKEKDTEE
                     KQGRVMMWEYPIKRT"
BASE COUNT          995 a          644 c          629 g         1081 t
ORIGIN      
        1 ttatggataa aatagtatgg actaatgagg aaaattaata gctcatttaa taaggccttt
       61 ttttgtgggg ttcttttcaa actaagaaat ctttttctta gcagttaatt tttgccatta
      121 agagaataag aaagagggta aatgacgtat gacagatgag ttagaacaaa aagcactgat
      181 tactattttt ggcggtacgg gagatttggc aaatcgcaaa ctttaccctt cgctatatca
      241 tttgtacagt aagggatctc ttggcgacaa ttttgctgtt attggaacgg ctcgtcgtga
      301 atggagtaac gatttcttcc gtgataaagt aaaagagtct atcaaagaca ttgacggttc
      361 cgaaaaagac gcggatgcat ttgcttctca cttctactat caatctcatg atgtgacaaa
      421 taaagaatct tatgtaactt taaaagattt gtctgatgaa ttagatgcaa aatacgaatt
      481 aggtggcaat cgcctcttct atcttgcaat ggcgccgaat ttctttggaa ctatcgcaag
      541 tcgcattaaa tctgaaggat ttgtagatac agatggcttt catcgtttaa ttatcgaaaa
      601 accatttggt cacgatttag ctagtgcaga agaattaaat aattcgcttc gtcaagcatt
      661 taaagaagat gaaatttatc gtattgacca ttatttagga aaagaaatga tccaaaatat
      721 ctcggttatt cgttttgcaa attctatcat tgaatcgctt tggaataatc gttacatcga
      781 taacatccaa gttactttaa ctgaggtgct tggggttgaa gatcgtgggc gctattacga
      841 tgaaagtggc gcgcttcgag acatggttca aaaccatatt ctccaaatcg tttctctact
      901 tgcgatggag ccaccaatta acttaacgac acgcgagatt cgtcatgaaa aagttcgcgc
      961 gcttcgttcc ttacgcgttt ttgaaggtaa agaagttcac caaaacttta ttcgtggtca
     1021 gtacggtcct ggtgaagtag gtggcaaaga actcaaaggc tatcgtcaag aagataatgt
     1081 ggatcctcat tccaatacgg aaacgtttgt tgcagccaaa ctagaaatcg ataacttccg
     1141 ctgggctggc gttccatttt atattcgcac gggtaaacgt cttgcgaaga aaacgaccca
     1201 aattgcgatt cagttcaaag atgtaccgct gaatttattt ggtcaacaac aatcgcttgg
     1261 tggtaatgtg cttgttattc atatccaacc ggacgaaggt attacacttc atttgaacgt
     1321 caaagaacct ggtcaaggta tggttacaat gccagtcaac ttaaattata ttcattcctc
     1381 tccagacggc atgaacacac ctgaggctta cgaaaaattg attctagact gtcttcgcgg
     1441 tgatgcgact tacttctctc actgggatga agtatcacta tcatggaact ttattgacca
     1501 tatagcagat gtttggacaa atacgaaaga tcatttcccg aactacaaat ccggttcgat
     1561 ggggcctaaa gaagcagacg acctcattca acgcgacgga ttccagtggt tcccaatcga
     1621 ttaatcaaaa aaccagaaat atggctaccc tagcctattt ctggttttct ttgtttactt
     1681 gcaaaaaccc ctatgcatgt tagaatagag aggaaaacta actagttaaa ggagctcata
     1741 taatggctga aaatattgat gactacttag aaaaaggcat gtatggggca aaagagatta
     1801 atcccgctga gaagaaaaaa tatttaggaa cttatcgcga acgtgtttta gttgcactca
     1861 caaaagagga agttttgacc caagagtatc ttccagaact agaaaaagca atactagaaa
     1921 acagtgactc caagcttctt ttaaacggat tactccatta taattcttta cgcccttata
     1981 ttaaactagc agaaaaatgt aaacatgaat tttcgattgt tactcgttta gaaggtgaaa
     2041 cagatattta cctcgtcctc gcctgtcaaa aagcggtaaa caaggaagac attcatttat
     2101 ataaagaagc agaagtagaa caagaagaag aacctgtctc gttacttgag aaggttcgta
     2161 aactgtttaa ttaagttttc cgcttactat ttaggaggtc gatttatgct acacattatc
     2221 actctgtcac tcgctatttt gatggcgtta caaacgattt atttcttcat ccgtaaaaat
     2281 gttaatatgg gcgttatgtt tttgctcata actgctgcac ttcttttact cagtacgatt
     2341 taatggaatt cctgtttcga tagcttgctt taaatttcgc tgcatgacac caattcctga
     2401 tgccccgtca agtgggaaat taaatacttg cttaccatcc gtgatgctcg tcaataaccc
     2461 tctgaacttt ttgccgccta acatcggaat tggttcggta gggtttattt gtagtttctg
     2521 ccactgctcc tttaattcct cgagttgaat cgtatcagca ctagtccctt tcatggtgaa
     2581 gcggacatca tatgtttttg aaataatatc gtccggtcgc aaaaaaccat atttggggga
     2641 taatattaaa tattcatttg caaactgttc cgcataggct ctacttaaac gatgaaatgt
     2701 tcctgtatac acttcgcttg cttttactgg accaatatct ggcgacttat cccatatttt
     2761 tggttttcca gatgcaataa taatcaggtt cgttttattg gatattccca catcatcact
     2821 cttccttgtt tctcttctgt atctttttct ttgatatgta cgaaatggtt gtgttttagt
     2881 acttgtatgg atgccatgtt ctgctcgtag cttctggcaa atatgcgatg aatggcgggc
     2941 tgttcttcta gccaagcaat catacctata agcgcttctg acatataacc tttattttga
     3001 taatctggta cgatgctgta gccaatttcg atttcgcccg tttcgtccgg atttccttgt
     3061 ccaccaattt cgccgataat tttattttct tcttttaaaa tgactaggcg tgtccattta
     3121 atcattctat cgtctttttt cacgttttct aatacatatg gtaaataaaa aaagaaatca
     3181 attcctggcc agtcaggtga cacatggtag ccacttgctt tttccaaagc ttctgtccca
     3241 ttaatcgttg cctgaatcat ttctagtgtg taattaatta atattaatcg atctgtctct
     3301 aaattatcca caacaataac ccggctttcc tactaattta ttactttca
//
LOCUS       DABQVC010000239         3272 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.239,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000239 DABQVC010000000
VERSION     DABQVC010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3272
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.239"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            227..2458
                     /gene="pflB"
                     /locus_tag="IBJ56_002665"
     CDS             227..2458
                     /gene="pflB"
                     /locus_tag="IBJ56_002665"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HAM3418904.1"
                     /translation="MTEQWYEFAGGNWQQEVDVRDFILKNYRLYDGDDTFLVGPTEAT
                     TKLWDQVMDLTKKERENGGVLDMDTKIVSTITSHDPGYLNKDLEKVVGVQTDVPFKRA
                     LQPFGGIRMAEVAAESYGFKVDEEISHIFSEYRKTHNQGVFDAYTAEMRAARKSGVIT
                     GLPDAYGRGRIIGDYRRVALYGVDFLIKQKKQDLNNTGLRTMSDDVIRQREELNEQIR
                     ALGELKVLGEKHGFDLGRPAKTAQEAFQWLYLGYLAAIKEQNGAAMSLGRTSTFLDIY
                     VERDLRNGLITEEEAQEIVDHFIMKLRLVKFARTPDYNELFSGDPTWVTESIGGITEE
                     GVPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSTHLPSGFKKFCAKMSIKTSAIQYEND
                     DVMRPKWGDDYAIACCVSAMRVGKQMQFFGARANLAKTLLYAINGGIDEKSKAQVGPA
                     YRPVEGDVLDYKEVMEKYDAMMEWIAELYLNTLNVIHYMHDKYAYERIEMALHDTEVL
                     RTMATGIAGLSVAADSLSAIKYATVRPIRDEDGIVVDYEIEGDYPKYGNNDDRVDEIA
                     VELLKTFMTKVRKHKTYRDAVHTTSVLTITSNVVYGKKTGNTPDGRRAGEPFAPGANP
                     MHGRDTKGALASLSSVAKLPYEYGQDGISNTFSIVPKALGREDESQINNLVAMLDGYS
                     TKMGHHLNINVFNRDTLLDAMDHPEEYPQLTIRVSGYAVNFIKLTREQQLDVIHRTMH
                     ESM"
     gene            2535..>3272
                     /gene="pflA"
                     /locus_tag="IBJ56_002666"
     CDS             2535..>3272
                     /gene="pflA"
                     /locus_tag="IBJ56_002666"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HAM3418905.1"
                     /translation="MTEVLGRVHSVETMGTVDGPGIRFIVFMQGCLLRCQFCHNPDTW
                     KIGTGTERSAQDVFDEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVH
                     TTIDSCGGCFTRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAH
                     YLRDKEQPIWIRHVLIPTKTDDPEDLTKLHEFIQTLPNVKQVDVLPYHTMGVYKWKEM
                     GIRYPLEGIEAPEEEVVALANKILETSS"
BASE COUNT         1092 a          596 c          657 g          927 t
ORIGIN      
        1 aaaaacaaaa ttagaatcat aataaattag ggaaatggct atttaaaggt aattttaagc
       61 tttttaagtt taaaagacac aaaaaagtca taaaaaagtt tgaaaaatat tgcacaaaac
      121 tgtagcattt tccagagaat atgttatgat aacagtgtag attatttata aattagtttg
      181 ctcaaaaaag cacgctcgag aatgaacaat aaatggaggt tatatgatga ctgaacaatg
      241 gtatgaattc gcaggtggta actggcaaca agaagtagat gtacgtgact ttatcttaaa
      301 aaactatcgc ttatatgacg gtgacgacac attcttagtt ggcccaaccg aagcaactac
      361 aaaactttgg gatcaagtaa tggacttaac taaaaaagaa cgtgaaaacg gtggcgtact
      421 ggatatggat accaaaatcg tttcaaccat cacttcacat gacccaggtt acttaaacaa
      481 agacttagaa aaagttgtcg gtgttcaaac tgacgtacct ttcaaacgcg ctttgcaacc
      541 attcggtgga atccgtatgg cagaagttgc agctgaatct tatggcttta aagtagacga
      601 agaaattagt catatttttt ctgaataccg taaaacgcat aaccaaggtg tatttgatgc
      661 ttatactgct gaaatgcgcg cagctcgtaa atcaggcgta attactggtc ttccagatgc
      721 ttatggccgt ggccgtatta tcggtgacta ccgtcgtgta gcactttacg gagtagactt
      781 cttaattaaa caaaagaaac aagatttaaa caatacaggt ttacgtacaa tgagcgatga
      841 cgttatccgt caacgtgaag aacttaacga acaaattcgt gctcttggcg aattaaaagt
      901 actaggcgaa aaacatggtt tcgatcttgg tcgcccagct aaaactgcac aagaagcttt
      961 ccaatggtta taccttggtt acttagcagc aattaaagaa caaaatggtg ctgcaatgag
     1021 cttaggacgt acatctacat tccttgatat ttatgtagaa cgtgatcttc gtaacggctt
     1081 aattactgaa gaagaagcgc aagaaatcgt tgaccacttc atcatgaaat tacgccttgt
     1141 aaaatttgct cgtacaccag attacaatga attattctct ggagatccaa catgggttac
     1201 tgaatccatc ggtggtatta cagaagaagg cgttccactt gtaacgaaaa actcattccg
     1261 tttcttacac actttagata acttaggacc tgctccagaa ccaaacttaa ctgtactttg
     1321 gtccactcat ttaccatcag gattcaagaa attctgtgct aaaatgtcta tcaaaacatc
     1381 tgctattcaa tacgaaaatg acgatgttat gcgccctaaa tggggagatg actatgcaat
     1441 cgcatgttgt gtatctgcaa tgcgcgttgg taaacaaatg caattctttg gtgctcgtgc
     1501 caaccttgct aaaacacttc tttacgcaat caatggtggt atcgatgaaa aatctaaagc
     1561 acaagttgga cctgcttatc gtccagttga aggcgacgta ttagactaca aagaagtaat
     1621 ggaaaaatat gatgcaatga tggaatggat tgcagaactt taccttaata cattaaatgt
     1681 tattcactat atgcatgata aatacgctta cgaacgtatc gaaatggctt tacatgatac
     1741 agaagtatta cgtactatgg caactggtat cgctggactt tctgttgcag ctgactcctt
     1801 atctgctatt aaatatgcta ctgttcgtcc aattcgtgac gaagatggca tcgtggttga
     1861 ttatgaaatc gaaggcgact atcctaaata cggaaataat gatgaccgtg tagacgaaat
     1921 tgctgtagaa cttctaaaaa cattcatgac taaagttaga aaacataaaa cttaccgtga
     1981 tgcagttcac acaacttctg ttcttacaat cacttctaac gtggtttatg gtaagaaaac
     2041 tggtaacact ccagacggac gtcgtgcagg agaaccattt gcaccaggtg cgaacccaat
     2101 gcatggccgt gatacaaaag gtgctttagc ttctttatct tctgttgcta aacttcctta
     2161 cgaatatggt caagatggta tttctaacac attctctatc gtaccaaaag ctttaggtcg
     2221 cgaagacgaa tctcaaatca ataacttagt tgcaatgcta gatggttatt ctacaaaaat
     2281 gggacatcac ttaaacatca acgtattcaa tcgtgataca ttactagatg cgatggatca
     2341 tccagaagag tatccgcaat taactatccg tgtatctgga tatgcagtta acttcatcaa
     2401 attaacacgt gaacaacaat tagatgttat tcaccgtaca atgcacgaat ccatgtaata
     2461 attaggcgag aacgctttgg caaggattgc tcaccgtagc aatccttgtt atttaggaaa
     2521 ggaagaggag aattatgaca gaggttttag gaagagttca ttcagtagaa acaatgggaa
     2581 cagtagacgg tccaggtatc cgctttattg tttttatgca ggggtgttta cttcgttgcc
     2641 aattttgtca taatcccgat acttggaaaa ttggtactgg cacagaacgt tctgcccaag
     2701 atgtatttga cgaagcaatt aagtataaag agttttggga tgcatcaggt ggcggcgtga
     2761 cagttagtgg cggtgaaccg ttgcttcaag tagatttcct aatcgagttt ttcacgctat
     2821 gtaaagcagc aggagtgcac acaactattg attcttgtgg tggttgtttc acacgtgatc
     2881 cggagtttat tgagaaattg gatcgtttga tggaagtaac ggatttaatt ttactggata
     2941 ttaagcaaat caacccagaa aagcatttaa aactgacaac gaaatctaat gcaccaataa
     3001 tcgattttgc tcattattta cgtgacaaag agcaaccaat ttggattaga catgtactaa
     3061 ttccaaccaa gacagatgat ccagaagatt taacaaagct ccacgaattc attcaaactc
     3121 ttccaaacgt aaaacaagtg gatgtgcttc cataccatac aatgggtgtt tacaaatgga
     3181 aagaaatggg cattcgttat ccgttagaag gaatcgaggc gccagaagaa gaagtggtag
     3241 cacttgccaa taaaatctta gaaactagta gt
//
LOCUS       DABQVC010000240         3237 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.240,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000240 DABQVC010000000
VERSION     DABQVC010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3237
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.240"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(21..167)
                     /locus_tag="IBJ56_002667"
     CDS             complement(21..167)
                     /locus_tag="IBJ56_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XkdX family protein"
                     /protein_id="HAM3418906.1"
                     /translation="MINWYEKVKDYFLGGYYTEADVNKFVTLKKITRSQADEIIAMKE
                     AKAE"
     gene            complement(167..508)
                     /locus_tag="IBJ56_002668"
     CDS             complement(167..508)
                     /locus_tag="IBJ56_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418907.1"
                     /translation="MSELIKVFKYDDNGVFERDDLIILKKGEKIPDGYTLIEPPVPAI
                     NPVFNTKKQKWSPGEEASIPEPPELTELEKLTQDYADLMLYVAEVEQKTEQTQQDNAN
                     LLLSLAEAGAL"
     gene            complement(505..1626)
                     /locus_tag="IBJ56_002669"
     CDS             complement(505..1626)
                     /locus_tag="IBJ56_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HAM3418908.1"
                     /translation="MTALRKINATLDLNRKSWNIERIEAVQGDIDSLMIAVQIVENGK
                     LKDLTDYKPTFAVVLPGTVKYVIDDLHFSNEKMNEGYFEYTFVKEAFSVPGVYDTARF
                     ILQNEDGTELSGMPRFTYYVEKDPLQGKVVAESYISDFERLEQMIHAVELEIAELHDE
                     VTSESVRLDSEIAALDEKINTETSKLQSEADDLQQQFDNLNPAQFAQKTVLDEHVNDA
                     DIHVTATDKTNWNAKETVEGAQAKADKALADAKAFFELSSSVQSVTLTPKNGFVASQP
                     LIARYIKFGNRFLVIVSGIVGKGTGSGTGICATLPTFLAPDASWNKLYSAAQQSTAAS
                     NQANIYLSVSADINIVGVGSVDVNTGLDGIIYLTKEVTT"
     gene            complement(1623..>3237)
                     /locus_tag="IBJ56_002670"
     CDS             complement(1623..>3237)
                     /locus_tag="IBJ56_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418909.1"
                     /translation="FSIKLLKRRGRDKVASIRYRKNLTGLETDVDTENVITRIYPFAN
                     KQDSNGNEQTIVLPEKYIDSEHINAYSNVKILAVDYSSDDTVTDVTTLRNVAGKYFMN
                     NKTDIPEMNIKVSFEPLSEMTGYEKYKNLEAVELGDTVTVYHPDLNVNITAKAVRTKY
                     NVITEKYEEIELGSVKADFTDTLKSDISKIIDEVPTQDWMQNELKAIGDSIQGANGGN
                     IYTFPTFKPSTMYFMDTDNVNTAKKVMVMNREGIAFYQNGITGIPKTAWGIDGKFVAD
                     WIGTGTLRAIDIEGVSITGSSGFFDTLYSSFLPGLPAPQYKEELKMGGGVGFHLTAKS
                     VTKPYPALQMRMNTNGDLGLAIEAVNENTGAIDADRVVRLSPFAGIETPLIQSDGWCC
                     IGANSDGKTASIDRHTWISGGGPQLRYVPHRASNFETASSEEYKKNIRKVKKTAFGKT
                     AKQVINETDVFTYSHIADETNEKKIGFIAEQASDSLTTADGKAIDLYNSVAWLYQYAK
                     ENEEEKEALKAEVKELKNLVNKLVNEVSK"
BASE COUNT          876 a          698 c          491 g         1172 t
ORIGIN      
        1 tttcaacata aaaaataagc ctattcggct tttgcttctt tcatagcgat tatttcatct
       61 gcttgtgatc tcgttatctt ttttagagta acgaatttat taacatctgc ttcagtatag
      121 tagccgccta aaaaataatc tttcactttt tcataccaat taatcattac aaagcacctg
      181 cctccgccaa agataatagt aagtttgcat tatcttgttg cgtttgttcc gtcttctgtt
      241 cgacttctgc tacataaagc attaagtccg cataatcttg tgttaatttt tcaagctcgg
      301 tcaattctgg cggttcagga atgcttgctt cttcaccagg actccatttt tgctttttcg
      361 tattaaaaac cggattaatt gctggtactg gtggttcaat tagtgtatag ccatccggaa
      421 tcttctcccc tttttttaaa ataattaagt cgtcacgctc aaatacgccg ttgtcatcat
      481 atttaaaaac ttttattaac tcgctcatgt tgtcacctct ttagttaaat aaattatgcc
      541 atcaagtccg gtgttcacgt ctaccgaacc aactccaacg atatttatat cagcgctcac
      601 acttagatat atattcgctt gattacttgc tgccgtactc tgctgtgcag cggaataaag
      661 tttattccag ctcgcatcag gagccaaaaa agttggtaac gttgcgcata tgccagttcc
      721 acttccagtc cctttgccta caattccgct aacaatgact agaaaccgat tgccaaactt
      781 aatgtatcga gctattaaag gctgacttgc aacaaatccg ttcttcggcg tcaaagtaac
      841 actttgtaca gagctagata gttcaaaaaa agcttttgca tcagcaagtg ctttatctgc
      901 tttagcctgc gcgccttcta ctgtttcttt tgcattccag tttgttttat cagtcgctgt
      961 gacatgaata tcagcatcat taacatgttc atccaaaaca gttttttgtg cgaattgagc
     1021 gggatttaag ttatcaaact gctgttgcaa gtcatctgct tcactttgaa gcttactagt
     1081 ttctgtattg attttttcat caagtgccgc aatttcacta tctaaacgca cgctttcact
     1141 tgtcacttca tcatgtagtt cagcaatttc taattctaca gcatgtatca tttgttctaa
     1201 tctctcgaaa tcacttatat agctttctgc tactactttt ccttgcaacg ggtctttttc
     1261 aacataatac gtaaaacgag gcataccaga tagctctgtc ccatcttcat tttgcaaaat
     1321 aaaacgggct gtatcataca ctcccggaac agaaaatgct tcttttacaa atgtgtattc
     1381 gaagtaacct tcattcattt tttcgttact aaaatgtaaa tcgtcaatta catatttgac
     1441 cgtgcccggt aaaactaccg cgaacgttgg cttataatct gttaagtctt tcaatttacc
     1501 gttttcgaca atttgaactg ctatcatcag agaatcaata tcaccttgaa ctgcttcaat
     1561 gcgctcaata ttccaagatt ttctatttaa gtctaatgtt gcgtttattt ttcttaaagc
     1621 agtcatttac tcacctcgtt tactaattta tttactaagt ttttcaactc ttttacctct
     1681 gcttttaatg cttctttttc ttcttcgttt tcttttgcgt attgatatag ccacgcaaca
     1741 gaattatata agtcaattgc ttttccgtcg gctgtagtca gcgaatcaga agcttgttca
     1801 gctataaatc cgattttctt ttcgtttgtt tcatcagcaa tatgcgaata agtgaaaaca
     1861 tctgtttcgt ttatgacttg cttagctgtt ttaccaaacg cagttttctt tactttacgt
     1921 atatttttct tatattcttc tgaactagca gtctcaaaat tactagctcg atgcggcaca
     1981 taacgtaatt gtggaccgcc accggaaatc caagtatggc gatcaataga agcggtttta
     2041 ccatcagaat tagcaccaat acagcaccaa ccgtcgcttt gaattaaagg tgtttcaatt
     2101 cccgcaaaag gggacagtct aacaacccta tcagcatcta tcgcacccgt attttcattc
     2161 acagcttcaa tagcaagccc taaatctcca ttcgtgttca ttctcatttg cagagcggga
     2221 taaggttttg tcaccgattt tgcggttaaa tggaaaccaa cacctccgcc cattttcagt
     2281 tcttctttat attgaggtgc tgggagacct ggtaaaaaac ttgaatacaa tgtgtcaaaa
     2341 aaacctgatg agcctgttat gcttacccct tcaatatcga tagcccttaa ggtccctgtt
     2401 ccaatccaat cggcaacaaa tttaccatct attccccatg cggttttagg aatgccggtt
     2461 atcccatttt gataaaacgc tataccttct ctgttcataa ccatcacttt ttttgcagta
     2521 ttcacattgt cagtgtccat aaaatacatg gtcgaaggtt taaatgttgg gaaagtataa
     2581 atgttacctc cgtttgcgcc ttggatacta tctcctattg cttttaattc attctgcatc
     2641 caatcctgag tcggaacttc gtcgataatt ttgcttatat ctgattttaa tgtgtctgtg
     2701 aaatctgctt tcacactacc aagctcaatt tcttcatatt tttcagtaat aacattatat
     2761 tttgttcgaa cagcttttgc agttatattt acgtttaaat ctggatgata aactgtgact
     2821 gtgtctccta actcgactgc ttccaaattt ttatattttt cataacctgt catttcagaa
     2881 agtggctcaa aagatacttt gatattcatt tctggtatat ctgtcttatt attcataaaa
     2941 tatttacccg ctacatttcg aagtgttgtt acatctgtca ctgtgtcatc agatgagtaa
     3001 tcaactgcca agatttttac attcgaatat gcattaatat gttcactatc tatatatttt
     3061 tcaggcaata caatcgtttg ctcattacca tttgaatctt gcttattcgc gaatggataa
     3121 attcgagtaa ttacattttc cgtatctaca tcagtttcta atccagttaa atttttccgg
     3181 tatctaatag atgcaacttt atctctccca cgtcgtttta atagttttat actaaag
//
LOCUS       DABQVC010000241         3227 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.241,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000241 DABQVC010000000
VERSION     DABQVC010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.241"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..260)
                     /locus_tag="IBJ56_002671"
     CDS             complement(<1..260)
                     /locus_tag="IBJ56_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ribazole phosphatase"
                     /protein_id="HAM3418910.1"
                     /translation="MQLIFVRHGETDWNVAKKYCGQLDVALNENGIRQMEQLREKLEN
                     YSIDLVVTSDLMRVKQSANILSNAKTLRFPALNEMNFGDFEG"
     gene            complement(261..1007)
                     /gene="cobS"
                     /locus_tag="IBJ56_002672"
     CDS             complement(261..1007)
                     /gene="cobS"
                     /locus_tag="IBJ56_002672"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HAM3418911.1"
                     /translation="MKTLILLIQFFTRIPLPVQINMDEINLKKGSALLPFVGVIIGAW
                     NWLIFTLVALLMPLPVAIIAGLFAEIIITGGFHVDALADTADGLFSSRKRERMLEIMK
                     DSRVGANGVIAICFYFLFYGSLFLSVPDTQQIGWLFFVLPIVAKGVTMLLFAKMTYAG
                     SKEGLGSIFLGVPWWPVVIAQVIVLVALGLFFSYIGVIAYAGVILFTIIYRAFVYKRI
                     GGMNGDTLGAGGQMGQLICLFCLVLLWGLI"
     gene            complement(1009..1566)
                     /gene="cobU"
                     /locus_tag="IBJ56_002673"
     CDS             complement(1009..1566)
                     /gene="cobU"
                     /locus_tag="IBJ56_002673"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HAM3418912.1"
                     /translation="MSEMMLVTGGARSGKSSFAEKEATKYNRVLYVATGIAFQNDTEF
                     QARIKKHQATRPEHWDTFEAFKGIAAYLERNGNKYDVIMLDCVTMLVTNLFFSLLGER
                     ELTNEIADEVEAGIQSEVRAILKAGEQSSAKFIFVTNEIGLGVVPENKLTRVFRDIIG
                     RINQQIATEVEEVYFVVSGIPKRWK"
     gene            complement(1559..2302)
                     /locus_tag="IBJ56_002674"
     CDS             complement(1559..2302)
                     /locus_tag="IBJ56_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HAM3418913.1"
                     /translation="MPQVRDLSVIDVPGGCVLTSCDISAGFGEKVHDGLRVAPEVTAR
                     LTLRVALLEMLASGAVVVAVSDVIGAEMEPTGKRVIAGLKDELIKADLGHIELNGSTE
                     ENMNVTQTSVGVLVTGFATKAALKLINVHEAAVLFAFGEPIVGAEVLQRMAEMPDYHL
                     VKKLVEHSDVLEVVPVGSKGMAYEANTLARLNDCTFKASDVFNEATMNKTAGPASVIL
                     VAVKASEVKAFEQNFPAAKCLGELRNYHE"
     gene            complement(2327..2758)
                     /gene="eutP"
                     /locus_tag="IBJ56_002675"
     CDS             complement(2327..2758)
                     /gene="eutP"
                     /locus_tag="IBJ56_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutP/PduV family microcompartment system
                     protein"
                     /protein_id="HAM3418914.1"
                     /translation="MKKMMVMGSVGCGKTTLCQKLHGYDILYKKTQAVEYFQEMIDTP
                     GEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFSPMFASIFAKPVIGIVTKVDLA
                     ESEKDIERAERELRMAGAKHIFYISSLEETGIEELRAYLED"
     gene            complement(2764..3114)
                     /gene="eutS"
                     /locus_tag="IBJ56_002676"
     CDS             complement(2764..3114)
                     /gene="eutS"
                     /locus_tag="IBJ56_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HAM3418915.1"
                     /translation="MSFDDNKERVIQEYVPGKQVTLAHLIANPNRDIYTKLGLEEGAS
                     AIGILTITPSEASIIASDIATKSGDVRIGFIDRFSGSVVLTGDVSSVESALQQVVYSL
                     HEILDFSIPKITRS"
BASE COUNT         1007 a          834 c          472 g          914 t
ORIGIN      
        1 taaccttcaa agtcaccgaa attcatttca ttcaaagccg gaaaccgaag cgtctttgcg
       61 ttacttaaaa tatttgccga ctgcttcacg cgcataagat cactcgtaac aactaaatcg
      121 atcgagtaat tctccagctt ttcgcggagt tgctccattt gtcgaatacc attttcattt
      181 aacgcgacat ctaactgacc acaatatttt ttcgctacat tccagtccgt ttctccgtgt
      241 cgcacaaaaa taagttgcac ttaaatcaac ccccaaagca gcactaaaca aaataaacaa
      301 ataagttgtc ccatttgtcc acccgcacca agcgtatccc cattcatacc accaatccgt
      361 ttataaacaa atgcccggta aataatcgta aacagaatca cgccagcata agcaataacg
      421 ccaatatatg agaaaaacag ccctaacgca actaatacga tcacctgcgc aatcacaacc
      481 ggccaccaag gaactcctag aaaaatcgaa cctagtcctt ctttcgatcc cgcataggtc
      541 atttttgcaa aaagcaacat tgtcactcct ttagcaacaa tcggtaaaac gaaaaataac
      601 caaccaattt gttgcgtatc tggaacagat aggaataaag agccataaaa aagaaaataa
      661 aagcaaatcg caatcacgcc attcgcgcct acacgactat ctttcataat ttccagcata
      721 cgctctcttt tccgagaaga aaaaagtcca tccgccgtat ccgccagtgc atcaacatga
      781 aaaccgccag taatgataat ttctgcaaaa agccccgcaa taatcgcaac tggtaagggc
      841 atcaaaagcg ccaccaaagt aaaaatgagc caattccaag cgccaataat caccccgaca
      901 aacggcagca aagcactccc ttttttcaag ttgatttcat ccatatttat ttggacaggt
      961 aacggaattc gcgtaaagaa ttgaattaat aaaatcaatg ttttcatatt acttccacct
     1021 tttcggaatg ccactcacga caaaatagac ttcttctact tccgttgcaa tttgctgatt
     1081 aatacgacca ataatgtctc gaaagacgcg tgttaacttg ttttcaggta caacccctaa
     1141 tccgatttcg ttcgtaacaa aaataaattt ggctgaggat tgctctcctg cttttaaaat
     1201 tgcgcgaact tccgattgaa ttcccgcttc tacttcatca gcaatctcat ttgtcaactc
     1261 gcgctcacca agcaacgaaa aaaacaaatt agttactaac atcgttacgc aatcaagcat
     1321 tattacatca tatttatttc catttcgctc caaataagca gcaatccctt taaatgcttc
     1381 aaaagtatcc cagtgttctg gacgcgttgc ttgatgtttt tttatcctag cttgaaactc
     1441 tgtatcattt tgaaatgcaa ttccggtcgc cacatataaa acacgattat atttggtagc
     1501 ttctttttca gcaaaactac ttttaccact tctagcgcca ccagttacaa gcatcatctc
     1561 actcatggta attcctcaac tctcctaaac atttagccgc tggaaagttc tgctcaaatg
     1621 cttttacttc acttgcttta actgctacta aaataacaga agcaggcccc gcagttttat
     1681 tcatggtcgc ttcattaaaa acgtcactgg ctttgaaagt acaatcatta agccgtgcta
     1741 aagtatttgc ctcataagcc attcctttcg acccaaccgg cacaacttca agcacatcgc
     1801 tatgctccac caattttttc actaaatgat aatctggcat ctccgccatc ctctgcaaaa
     1861 cttctgctcc aacaatcggt tcgccaaatg caaataagac cgcagcttcg tgcacattta
     1921 taagcttaag tgcagcttta gtcgcaaaac cagttacaag aacgcctaca ctagtttgtg
     1981 ttacgttcat attttcttca gtacttccat ttaattcaat atgacctaaa tcagccttaa
     2041 taagttcgtc ttttagccct gcgataacac gtttaccggt cggctccatt tccgctccga
     2101 taacatcact cacagccact actacagcac ctgaagcaag catttctagt agagcgactc
     2161 tcaaggtcaa acgagctgtg acttccggcg cgactcttaa accatcatgc actttctcac
     2221 caaacccagc gctaatatca cagctcgtca aaacacagcc accaggcaca tcaattacag
     2281 ataaatccct cacttgaggc ataaaataac ccccacttag ttaaaattaa tcttccaaat
     2341 atgcccgaag ctcttctatt ccagtttcct ctaacgaaga aatataaaaa atatgcttcg
     2401 cgccagccat gcgtaattcc cgctctgctc gctcgatgtc tttttctgat tccgctaaat
     2461 ccacttttgt aacaatccca ataaccggtt tagcaaaaat actggcaaac atcggtgaaa
     2521 acgtctgctt cttctccgtt acactctgta aaattgcgat tacagatgca tcagccgcag
     2581 tcacagtgag cgcgctgtag agttgtctat gctgtacaaa ttcacctggc gtatcaatca
     2641 tttcttgaaa atactccaca gcttgtgttt ttttatataa aatatcatat ccatgtaatt
     2701 tctggcacag cgttgtttta ccacaaccaa ctgaacccat taccatcatt ttcttcaagt
     2761 gactcagctc ctagtgattt ttggaataga aaagtccaaa atctcatgta atgaataaac
     2821 gacttgttgt aaagctgatt caacagaaga aacatcacct gtaagtacaa cggacccact
     2881 aaaacgatca ataaagccaa ttcgtacgtc acctgattta gttgcaatgt cactcgcaat
     2941 aatggaagcc tcacttggcg taatcgttaa aattccaatc gcacttgcgc cttcttctaa
     3001 tcctaatttt gtataaatat cacggtttgg gttggcgatt aaatgcgcca gcgtcacctg
     3061 ttttcccggt acatattctt gtattacacg ctctttatta tcatcaaaac tcattttctt
     3121 cactcctcat ctagacaaac tatctcaaaa taatcctatc atatttaagc gccactattt
     3181 tgtcagattg ttcaaaaggc acgcaaccac agtcagtgcg taccttt
//
LOCUS       DABQVC010000242         3197 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.242,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000242 DABQVC010000000
VERSION     DABQVC010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.242"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..471
                     /locus_tag="IBJ56_002677"
     CDS             <1..471
                     /locus_tag="IBJ56_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012580737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0104 family protein"
                     /protein_id="HAM3418916.1"
                     /translation="EKVSNLRNTLDEKIITFHEESSRIGKDWKLIVRCCFYTTLQLWI
                     YFSIPFFILQAIGVTGIGLYMAITYHAFIIMFATVMPTPGGAGGAEYTFTLLFGMLLG
                     PAKLLMALVLWRIITYYSCIVFGAGALLIKDTASKKIKPRIKALAKAPAKNIPQ"
     gene            588..1859
                     /locus_tag="IBJ56_002678"
     CDS             588..1859
                     /locus_tag="IBJ56_002678"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HAM3418917.1"
                     /translation="MTDKLIIRGGKKLAGTLQVDGAKNSAVALIPAAILAESEVVLEG
                     LPDISDVHTLYNILEELGGTVRYDNKTAVIDPTDMISMPLPSGNVKKLRASYYLMGAM
                     LGRFKKAVIGLPGGCYLGPRPIDQHIKGFEALGAKVTNEQGAIYLRADELKGARIYLD
                     VVSVGATINIMLAAVRAKGKTVIENAAKEPEIIDVATLLTNMGAIIKGAGTDTIRITG
                     VEHLHGCHHTIIPDRIEAGTFMVLAAASGKGVRIENVIPTHLEGIIAKLTEMGVPMDI
                     EEDAIFVGEVEKIKKVDIKTYAYPGFPTDLQQPLTALLTRAEGSSVITDTIYPSRFKH
                     IAEIERMGGKFKLEGRSAVINGPVQLQGSKVTATDLRAGAALVIAALLADGETEIHGV
                     EHIERGYSKIIEKLSAIGANITRSSAAETKL"
     gene            1964..>3197
                     /locus_tag="IBJ56_002679"
     CDS             1964..>3197
                     /locus_tag="IBJ56_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HAM3418918.1"
                     /translation="MAKLSIAHLESLTIKEIYALAKEHKITYYSKLTKRELIFALLKS
                     NAEKEGFFFMEGVLEIIPNEGFGFLRPINYSSSSEDIYISASQIRRFELRTGDKVSGK
                     VRPPKENERYFGLLHVEAVNGENPEVAKERVHFPGLTPLYPDRQIHLETGKNPISTRT
                     IDLISPIGFGQRGLIVAPPKAGKTVLLKEIANAITTNHPESELIVLLIDERPEEVTDI
                     ERSVKADVVSSTFDEVPENHIKVAELVLERAMRLVEQKRDVVILMDSITRLARAYNLV
                     IPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEF
                     KGTGNMELHLDRQLAERRVFPAIDMRRSGTRKEELLLSKERLEQLWKIRKAMPKQSDG
                     LDISERFVRYLKKTENNEA"
BASE COUNT         1025 a          563 c          698 g          911 t
ORIGIN      
        1 gaaaaagttt ctaatttaag aaatacatta gatgagaaaa ttattacttt ccatgaagaa
       61 agtagccgaa ttggtaaaga ttggaaatta attgttcgtt gttgttttta tacaacgttg
      121 caactttgga tttacttctc aatccctttc tttattttac aagcgattgg tgtgacagga
      181 attggcctgt atatggcgat tacgtatcat gcttttatta ttatgtttgc gacagtcatg
      241 ccaacgccgg gtggggctgg gggagctgag tatactttca ctttgttatt cggtatgtta
      301 ctcggtccgg caaaactcct aatggcactt gttttatggc ggattattac ttattatagc
      361 tgcatcgttt tcggggcggg cgcattatta ataaaagata cagcttcgaa aaaaattaaa
      421 ccgcgtatca aagcactcgc aaaagcacca gccaaaaata taccacaatg attaaaagct
      481 tgggacgtaa tgttcccagc tttttaggga aagcatttct tgcaaagtaa aacaaattaa
      541 tggataatga aacagtatta catgcttcaa gaaagaaggg tacatttgtg acggataaat
      601 tgattattcg aggcggtaaa aaattagctg gtactttgca agtggatggc gcaaaaaata
      661 gtgcggtggc attaattcca gcggcaattt tggcggagtc tgaagtggtt ttagaaggtt
      721 taccagatat ttcggatgtt cacacacttt ataatatttt agaagagctt ggcggcacgg
      781 ttcgctatga taataaaaca gcagttattg atccaacaga tatgatttct atgccacttc
      841 catcgggaaa tgtgaagaaa ttacgtgcgt cctattattt aatgggtgca atgttaggcc
      901 gatttaaaaa agcggttatt ggacttccag gcggttgtta cttagggcca cgtccaatcg
      961 accaacatat aaaaggtttt gaagcattag gcgcaaaagt aacgaacgag caaggtgcga
     1021 tttatttgcg tgccgatgaa ctcaaaggtg cacggattta tttagatgtt gtaagtgttg
     1081 gagcgacaat caatatcatg ctagcggctg ttcgtgcaaa aggaaaaacg gttatcgaaa
     1141 atgcagcaaa agagccagaa attattgatg ttgcaacgct tttaacaaat atgggagcaa
     1201 ttattaaagg tgcaggaact gatactattc gaatcactgg ggtagagcat ttacatggtt
     1261 gtcatcatac aattattcca gaccgaatcg aagcagggac attcatggta cttgcagcag
     1321 cttctgggaa gggagtacga atcgaaaatg ttattcctac ccatttagaa ggaatcattg
     1381 caaagctcac agaaatgggc gttccaatgg atatcgaaga agatgctatt tttgttgggg
     1441 aagtagaaaa aataaaaaaa gtagatatta aaacttacgc ttatccaggc ttcccaacgg
     1501 acttacaaca accgttaact gctcttttaa cacgtgcgga aggtagtagt gtcatcactg
     1561 atacaattta tccaagccgt tttaaacaca ttgcggagat tgaacgaatg ggcggtaagt
     1621 ttaaacttga aggtcgttcg gctgtcataa atggtcctgt gcaacttcaa ggttctaaag
     1681 tgacagcgac agatttacgc gccggtgcag cgcttgtaat tgcagcactt ttagctgacg
     1741 gagaaactga aattcacggg gtggaacata tcgaacgtgg ttacagtaag attattgaaa
     1801 aattatctgc tattggcgca aatattactc gtagtagcgc agcagaaaca aaattataaa
     1861 aaatgaggct gaacgaatca agtcgtttca gccttccctc taaatccctc cattatcatt
     1921 tattcctaaa tactatttat taactcaaaa aggtggtaca tatatggcta aactgtccat
     1981 tgcacactta gaaagtttaa caatcaaaga gatatatgcc ttagcaaaag aacacaaaat
     2041 tacttactat agtaaattaa caaaacgaga attgattttt gctttattaa aatcaaacgc
     2101 agaaaaagaa ggatttttct tcatggaagg tgtattagaa attattccaa atgaaggttt
     2161 tggcttctta cgccctatca actattcatc tagttcggaa gatatttaca tctctgcttc
     2221 ccaaattaga cgtttcgagt taagaactgg ggataaggtt tctggaaaag ttcgtcctcc
     2281 gaaagaaaat gaacgttact ttggcttact ccatgttgag gctgtcaatg gagaaaatcc
     2341 tgaagtggct aaagaaagag tgcatttccc aggactaaca ccgctttatc cagatcgtca
     2401 aattcattta gaaacaggca aaaatcctat ttccacaaga acgattgatt tgatttcacc
     2461 aattggtttt ggtcaacgcg gacttattgt agctccacca aaagcaggta aaacggtatt
     2521 acttaaagaa attgcgaacg cgattactac taatcatcca gagtcagaat tgattgtctt
     2581 gttaattgat gagcgtccgg aagaagtaac tgatatcgaa cgttctgtaa aggccgatgt
     2641 tgtcagttcc acatttgatg aggtacctga aaatcacatt aaagtagcag aactggttct
     2701 tgaacgagcg atgcgtttag tagaacaaaa acgcgatgtg gtcattttaa tggatagtat
     2761 tacgcgactt gcgagggcct ataacctagt gattccgcca agtggtcgaa cactttcagg
     2821 ggggattgat cctgctgcat tccatagacc gaagcgcttc tttggagctg ctcgtaatat
     2881 tgaagagggt ggaagcttaa ccattcttgc cacagcatta gttgacacgg gttctcgaat
     2941 ggacgatgtt atttacgaag aattcaaagg gacaggcaac atggagttac atcttgatcg
     3001 ccaacttgca gaacgtcgcg tttttcctgc tatcgatatg cgtcgctccg gcacaagaaa
     3061 agaagaatta ctactatcca aagagcgtct tgaacaactc tggaaaatcc gcaaagcgat
     3121 gccgaaacaa agcgatggac tagatatttc agaacgattt gtacgttatt tgaagaaaac
     3181 ggagaataat gaagctt
//
LOCUS       DABQVC010000243         3191 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.243,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000243 DABQVC010000000
VERSION     DABQVC010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.243"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(168..602)
                     /gene="fabZ"
                     /locus_tag="IBJ56_002680"
     CDS             complement(168..602)
                     /gene="fabZ"
                     /locus_tag="IBJ56_002680"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HAM3418919.1"
                     /translation="MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEF
                     FNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIGLFAGIDGCRFKRQVVPGDQ
                     LLLEAEITRMRGAIAKAKVKATVEGDLVCEAEIMFALSDLPK"
     gene            complement(625..1620)
                     /locus_tag="IBJ56_002681"
     CDS             complement(625..1620)
                     /locus_tag="IBJ56_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MreB/Mrl family cell shape determining protein"
                     /protein_id="HAM3418920.1"
                     /translation="MAKDVGIDLGTANVLIHVKGRGIVVNEPAVVAINNKTGQVLAVG
                     TEARDMVGRTPGDITAIKPMKDGVIADFDIVQEMLRFFIQKLNLKTFFSRPRILICCP
                     TNITSVEQKAIREVAEKSGGKQVFLEEEPKVAAIGAGMEIFEPSGNMIIDIGGGTADV
                     AVLSMGDIVTSQSVKVAGNKWDADILNYVKRKYNLLIGERTAENIKVTIGTACQGAKE
                     EKMEIRGRDLVSGLPKTISITSSEVEEAIHDSLHLMVLAAKQVLEQTPPELSADIIDR
                     GIIMTGGGSLLHGLDELMSEQLKVPVLITENPLDVVALGTGILLDSLTNKKRNRF"
     gene            complement(1783..3075)
                     /gene="murA"
                     /locus_tag="IBJ56_002682"
     CDS             complement(1783..3075)
                     /gene="murA"
                     /locus_tag="IBJ56_002682"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HAM3418921.1"
                     /translation="MEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKN
                     VPNLSDVFTINEVLKYLNADVSFVNDEVTVNATGEITSDAPFEYVRKMRASIVVMGPL
                     LARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAIVKIENGYIEATAEKLVGAKVYLD
                     FPSVGATQNIMMAATLAEGTTVIENVAREPEIVDLANFLNQMGARVIGAGTEVIRIEG
                     VKELTATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHISSLIAKLEEMGVQIIE
                     EENGIRVIGPDKLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTETVFENRFMH
                     VEEMRRMNADMKIEGHSVIISGPAKLQGAEVAATDLRAAAALILAGLVADGYTQVTEL
                     KYLDRGYNNFHGKLQALGADVERVDDSKIDVTNLASLF"
BASE COUNT          984 a          708 c          459 g         1040 t
ORIGIN      
        1 ggtagaaacc ttccaaaaga ttatttcctc taaaagaaaa acatcatttt atgtagttaa
       61 tgacatccaa agcatcattt tagtactttg aaaaaatttt taaccaatgt tattctgaga
      121 acatgaaaaa agcactaaaa cccatttgga cctcagtgct aatcttttta tttaggtagg
      181 tctgataagg caaacataat ttcagcttca caaaccaaat cgccttctac agttgctttg
      241 acttttgctt ttgcaatcgc gcccctcatc cgagttattt cagcctcaag caagagttgg
      301 tcccccggaa caacttgacg tttaaatcgg caaccatcaa ttccagcaaa taaaccaatt
      361 ttacctttat ttgcttcact ctgcatcatt gcaattccac tagtttgcgc tagagcttcc
      421 actattaaaa ctcctggcat tacaggatac tcaggaaagt gcccgttaaa aaattcttca
      481 tttgctgtta cattcttaat agcggtaact tttttgcctt cttcaacaga aataactcta
      541 tctactaaca aaaatggata acgatgaggc aaaatctctt tgattttctt aatatctaac
      601 atatacatcc cccaaaattc acatttagaa tctattacgc tttttatttg taagtgagtc
      661 aagtaaaatg ccggtaccaa gtgccactac atctaaagga ttctcagtaa ttaaaactgg
      721 gacctttagc tgttcggaca ttaattcatc taaaccatgt aataaagatc caccaccagt
      781 catgatgatt cctctatcaa taatatccgc tgaaagctct ggaggtgttt gttccaacac
      841 ctgtttagca gctaggacca ttaggtgtaa tgaatcgtga atcgcttcct ccacttcaga
      901 acttgtaata gaaattgttt tcggtaagcc actcactaaa tctctaccac gaatttccat
      961 tttctcttct ttggctcctt gacatgcagt accgattgtt actttaatat tttcagccgt
     1021 tctttcacca ataagtaagt tatatttacg tttaacataa tttaaaatat ctgcgtccca
     1081 tttgtttcca gcgactttta ctgattgact agttacaata tcacccatag acaatacagc
     1141 aacatccgca gtacctccac caatatcaat aatcatatta ccggaaggct caaaaatctc
     1201 catacccgca ccaatagcag caactttagg ttcttcttct aagaacactt gtttcccacc
     1261 acttttttca gcaacttcgc gaattgcttt ttgttcgaca gaagttatat ttgttggaca
     1321 acaaattaaa atacgtggcc gtgaaaaaaa agtttttaaa tttaactttt gtatgaagaa
     1381 acgcaacatt tcttgcacaa tatcaaagtc agcaataacc ccatctttca taggtttaat
     1441 tgccgtaatg tctcctggag ttctaccaac catatctctt gcttcagtcc caacggctaa
     1501 aacttgtcca gttttattgt taatagcgac aactgcaggt tcattaacga cgattcctct
     1561 tcctttaaca tgaattaata cattggctgt acctaaatcg ataccaacat cttttgccat
     1621 ttacatttta actcctttcg tggtgtacac ctaattttac atctcattct gaattatagc
     1681 ataatttatg tgcggctgaa atgtatattt tatagcaatg cggaattttt catgacaaat
     1741 aaaaaaaccg catcaagaag atacggtttt taacatttaa atttagaata aagacgctaa
     1801 gtttgttaca tcgattttgg aatcatctac acgttccaca tcagcaccaa gcgcttgtag
     1861 tttgccgtgg aaattattat agccacgatc aaggtatttt aactcagtta cttgtgtata
     1921 gccatccgca actaaaccag caagaataag cgctgctgct gcacgtaaat ctgtcgcagc
     1981 aacttctgct ccttgtaatt tagctgggcc agaaataata acagaatgtc cttcaatttt
     2041 catatcagcg ttcattctac gcatttcttc tacatgcata aaacgattct caaaaacagt
     2101 ttcagtcatg atgcttgttc cttcactcag catttgaata accatcattt gcgattgcat
     2161 atctgttgga aaacctgggt gtggcatcgt tttaacatcc acagctttta atttatcagg
     2221 accaattaca cgaatcccat tctcttcttc aatgatttga acgcccattt cttcaagttt
     2281 agcaattaac gaactaatat gctcgggaac tgcatcttca attaaaacat ttccaccagt
     2341 aatcgcagca gcaatcataa atgttcctgc ttcaatacgg tctggaataa tagaatgttc
     2401 agttgcagtt aattctttaa ctccttcaat tctaattact tctgttcctg caccgataac
     2461 tctagcaccc atttggttaa ggaagtttgc taagtcgaca atttcaggtt cacgagccac
     2521 gttttctatt actgtagtac cttctgctag agtagcagcc atcataatat tttgtgtcgc
     2581 tccaacactt gggaaatcta agtatacttt agcacccact aatttttcag cagttgcttc
     2641 aatatagcca ttttcaattt tcacgattgc gcccattgct tcaaaacctt ttaaatgtaa
     2701 gtcaactggt cttgagccaa ttgcacatcc accaggtaaa gctacacgtg ctgaaccagt
     2761 acgtgccaaa agtggtccca ttacaacaat ggaagcacgc attttacgaa cgtactcaaa
     2821 aggtgcatca gaagtgattt ctcctgttgc attgactgtt acttcatcat ttacaaaaga
     2881 aacatctgca tttagatatt taagaacctc attgattgtg aatacatcag acaagtttgg
     2941 gacatttttt aatacgctag tacctttact cgcaagtaat gtagcagcta ttaccggtaa
     3001 tacagcattc ttggcacctt ccattttcac agaaccattt aactgttttc caccgcgtac
     3061 aataattttt tccaaaaaga acccctccgc gttactaata actaaatcat ttatcgaatt
     3121 ttattaatca aaatttgaat ttaaaacata tctaagtaat tctaccactt atcaccctaa
     3181 aatatcaact g
//
LOCUS       DABQVC010000244         3175 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.244,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000244 DABQVC010000000
VERSION     DABQVC010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.244"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(7..618)
                     /locus_tag="IBJ56_002683"
     CDS             complement(7..618)
                     /locus_tag="IBJ56_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HAM3418922.1"
                     /translation="MKNYSMKVFVSVAVLGTLAFILMMLQFPLLPSAPFLKLDFSDIP
                     ALIGGLLFGPLAVILVELIKNVLLYIVSGSPVGVPIGEISNFINGIVYVLPIYYLFHW
                     FRSTKGMVFSTAIGTLVMTVVMSIFNYFILLPFYIKLGGLPADTDVAWLVTYAIIPFS
                     LLKGVIVSAVFLLLYSRLKKWIAKNQTVKERRKFEKKQQEVSH"
     regulatory      complement(808..930)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            complement(1060..1578)
                     /locus_tag="IBJ56_002684"
     CDS             complement(1060..1578)
                     /locus_tag="IBJ56_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HAM3418923.1"
                     /translation="MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTA
                     SISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLK
                     TGERYLAATSFLTFVALDADGKTVEVPLVKPETEEQKRIHAGAEARSIARKIRLKENQ
                     SLAESLSTDIPW"
     gene            complement(1594..>3175)
                     /locus_tag="IBJ56_002685"
     CDS             complement(1594..>3175)
                     /locus_tag="IBJ56_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     WalK"
                     /protein_id="HAM3418924.1"
                     /translation="DSALILLDDTMGVIIEQNGKSVYQSQSPDTISSASANKLIQDKT
                     LDKALEKDNSVTMKYNFKTEKSSLPVEISAQKFKLANGETGVVYVYQSYHDILKVNEK
                     TMSTLIISGIIAIVITSILSFVFSSRMAFPLREMKKIAIAVSKGNFDNRVPTYTHDEI
                     GELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEF
                     LHNWFFSPENTEKVLIPVALNELLNDTLEKKESQVGEITFADHTYVAILTLLYTGEHV
                     RSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVRE
                     FAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENY
                     VELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEARSNL
                     VITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNRKISV
                     ESELGKGSDFIITLPLYK"
BASE COUNT         1002 a          655 c          506 g         1012 t
ORIGIN      
        1 gataaattaa tggctaactt cttgttgctt tttttcaaat ttgcgccgtt cttttacagt
       61 ttggttttta gcaatccatt tttttagtct agagtatagt aacaagaata cagcactaac
      121 aatgactcct tttaataaac tgaatggtat aatcgcatat gtgactaacc aagcaacatc
      181 tgtatccgcc ggaagtccac caagtttaat gtaaaatggt aataaaatga aataattaaa
      241 tatcgacatg acgactgtca ttactaacgt tccaattgct gttgaaaaca ccattccttt
      301 tgttgaacga aaccagtgaa ataaataata aatcggtaat acataaacaa taccattaat
      361 aaaattggat atttctccaa tcggaactcc aactggacta cctgacacaa tataaagtag
      421 cacatttttg attagttcta ctaaaatcac tgcgagtggt ccgaataata agccaccaat
      481 caaagctgga atatcactaa agtcaagctt taaaaatggt gcactcggta gtagcggaaa
      541 ttgtagcatc attaaaataa atgctaaagt accaagaacc gccacactta caaaaacctt
      601 cattgaataa ttcttcattg tcatttctcc cttgatgttc accaagaagc gagtgacatc
      661 actagacgaa tgcaacccaa gcaaataaaa aacctcaact gaaaagagtt gagggagagt
      721 ttgtgaatga ataaacaagc accggatact caaataagca tcacagcttg ctaacacatg
      781 ctcgtgaaga caaacgaaaa ggtctgccaa catcttctcc catccagact atactgtcgg
      841 tcctggaatt acaccagagt caactgctaa aaaagcagat cgtggacttt aaccaccggt
      901 cgggaattgc accctgcccc gaagatgaac gaatatttta ttacaatttt cattttacca
      961 tgaaaaaaat ttttggcaag cacttttgta tattttttca cgtaagcgct ttctatctaa
     1021 attaaataaa aactagctgc ttagctagtt tttattaatt caccatggaa tatctgttga
     1081 taatgattcc gctaatgatt ggttttcttt taaacgaatt ttacgagcaa tgcttcttgc
     1141 ctcagcaccc gcgtggattc ttttttgttc ttctgtttct ggtttaacga gtggcacttc
     1201 tacagtttta ccatctgcat ccaacgctac aaatgttaaa aaggatgtcg ccgctaagta
     1261 acgttctcct gttttcaaat tctccgcaat aattttaacg aagatttcca ttgaacttct
     1321 gcccgttgaa gctacataag actctaagca aacagagtga tcatttttaa tcggttttaa
     1381 gaaatccact gagtctgtcg atgcagtgac aatttccgta cgacaatgac gagaggcact
     1441 gatagaagcc gtatcatcaa tataagtcat caatctaccg ccaaaaaggg tattatgatt
     1501 attcgtgtcc gacgggaaaa cccggcttgt tttaattact agtgattctt tgcaaaattt
     1561 tgtttgtctt ttttccatgt ttttcgctcc aatctattta tagagaggca aagtgataat
     1621 aaaatcagat cctttaccta attcgctttc aaccgaaatt ttcctattat gtgcttctac
     1681 aatattctta acgattgcaa gaccaatacc tgttccaact gcttttccgc gtttccttgc
     1741 tttatccact ttataaaaac gctcaaacag atatgggatg tcttcttccg caatcccact
     1801 accgttgtca gatactgtga ttacaagatt gcttctagct tcatcaatgg tttgttttaa
     1861 aattactttt ccatcatagc cttcttttcc agtatgacga atagcattca taattaaatt
     1921 aattaatact tgctccatcc ggtcggggtc ataggaatac tctaaatcgg gagtttcaag
     1981 ctctaagccg agttccacat aattctcttt cgcaagaacg tcaaaattag aaataacttt
     2041 tcgcagcaat ggagcgagcg gtaatttttg attatccatt tgattaaaac cagcttccat
     2101 tctagcaagg tctagcatat cattaaccaa acgcccaata cgaagggatt catcgtaaat
     2161 aatttgtgca aactcccgca cttcttcatc cgactgagca accccgtcaa taatcgcttc
     2221 actataacct tgtaacatcg aaatcggcgt tctaagttca tgcgaaacat tattaacaaa
     2281 atcgcttttc attttttcaa gttgtttctc ttcggtcata tcgcgaataa ccgcaacgac
     2341 actacgcaca tgttcccctg tatacaaaag tgttaaaatg gcaacatacg tatggtcagc
     2401 aaacgtaatt tctccgactt gagattcttt cttttctaac gtatcattca ataattcatt
     2461 taaagccact ggaatgagca ctttttcggt attttcaggt gagaagaacc aattatgtaa
     2521 aaattcttct gccggcggat tactaagaat gatcgtttta tccacactaa atttaataac
     2581 accatcagcc atcccaacta aaatattgga tagctgttcc ttttcttgcc taagggcgct
     2641 aacattatac ttcaattgct ttgccatatc gttaaaagct actccgagtt caccaatttc
     2701 atcatgcgta taagttggta cgcgattatc aaagttccct ttagaaacag caatcgcaat
     2761 ttttttcatt tcacgaagcg ggaaagccat gcgagaagaa aagacgaaag ataagataga
     2821 cgtgatgact atcgcaataa tacccgaaat aatcaaagta ctcatcgttt tttcgttcac
     2881 ttttagaata tcatggtaag actgataaac gtaaacaaca ccagtttcac cgttcgctag
     2941 tttgaatttc tgtgcagaaa tttcaaccgg taaggagctt ttttctgttt taaaattata
     3001 tttcatcgtt acactattat ctttttctaa agctttatct agtgtcttat cttgaattaa
     3061 tttattagca gatgcactag aaatggtatc tggtgactgt gattgataga cgctttttcc
     3121 attttgttcg ataatgacgc ccatcgtatc atcaagtagt atcagtgcag aatca
//
LOCUS       DABQVC010000245         3168 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.245,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000245 DABQVC010000000
VERSION     DABQVC010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3168
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.245"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            11..1210
                     /gene="coaBC"
                     /locus_tag="IBJ56_002686"
     CDS             11..1210
                     /gene="coaBC"
                     /locus_tag="IBJ56_002686"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HAM3418925.1"
                     /translation="MQGKNILLAVSGGIAVYKAVALTSKLTQAGANVKVMMTEHAQEF
                     VPPLSFQVLSKNDVYTDTFDEKKSSVVAHIDLADWADLVIVAPATANVIGKMANGIAD
                     DMVTTTILATEAPVWVAPAMNVHMIQHPAVIRNINRLYADGVRFIEPEEGYLACGYVG
                     RGRLEEPEKIVLRIAEFFQEDKDLLRDKNVLVTAGATREKLDPVRYFTNHSTGKMGFS
                     IAESAARHGAKVTLVTTSKALPVPPGVEAIYVESAEEMYQAVDEHKVSQDIFVMTAAV
                     ADYTPAKVSDQKIKKQPGDFAIEMKRTKDILLEIGQHKTADQVVIGFAAETENLEANA
                     RKKLTSKNADMIVANNISVAGAGFSGDTNIVTFYRKDGSSKALPILDKKEVAEHIIKE
                     TANFLRK"
     gene            1215..>3168
                     /gene="priA"
                     /locus_tag="IBJ56_002687"
     CDS             1215..>3168
                     /gene="priA"
                     /locus_tag="IBJ56_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HAM3418926.1"
                     /translation="MINIAKVIVDVPAMQVDRPFDYYIPEDLEELIRPGMRVSVPFGN
                     RKIQGFVIALGETEENPKLKGIDGVMDLAPVLNEELMELGDWLAEDTLSFRVSAYQAM
                     LPAALRAKYEKYFLRLDEENEELEQLFEGYETLDWKVAEARGLLKQIGKWVREGSVEV
                     VYQVKNKITSKKVRVVNCLKSPHQLAEIIEDMPKNAKAQSRVLAFFQAFEGNEITAAE
                     LKKQAETTDATLKKLVDLGILSIQEKIVSRDPYENHQFEKSESLQLLPDQQTACEKIT
                     AATDQETFLIHGVTGSGKTEIYLQTIEAKLKEGKEAIVLVPEISLTPQMVERFKSRFG
                     SEVAVLHSALSSGEKYDEWRKIERKEARVVVGARSAVFAPFENLGIIIIDEEHEASYK
                     QEDNPRYHARDVAIWRATKYQCPVVLGSATPSLESFARAKKGVYTLIELPSRVNDRAM
                     PEVSVVDMREELRKENRTEFSTELLEKIKERIAKKEQTVLMLNRRGYSSFVMCRDCGY
                     VVECPNCDISLTYHQSSNQMKCHYCGHEERVPQKCPSCEGEHIRYFGTGTQKVEESLT
                     KLIPEARVIRMDVDTTRTKGAHEKLLKSFRNHEADILLGTQMIAKGLDFPDITLVGVL
                     NADTMLHLPDFRASERTFQLLTQVSGR"
BASE COUNT         1063 a          630 c          698 g          777 t
ORIGIN      
        1 tgacttttca atgcaaggaa aaaatatctt actcgcagtg tccggtggca ttgctgttta
       61 taaagcagtc gcacttacaa gtaaattaac gcaagcagga gcaaacgtca aagtgatgat
      121 gacagaacat gctcaggaat ttgttccacc gctttcgttt caagtattat ctaaaaatga
      181 tgtatacaca gatacatttg acgaaaaaaa atcaagtgtt gtcgcacata tcgatttagc
      241 tgattgggcc gatttagtaa ttgtcgcacc agctaccgcg aatgtgattg gcaaaatggc
      301 aaatggaatc gctgatgata tggtaacgac aaccattctt gcaacagagg caccagtttg
      361 ggtagcgcca gcaatgaatg tccacatgat tcagcaccca gcagttattc ggaatattaa
      421 tcgattatac gcagacggtg ttcgttttat cgagccagaa gaaggttact tagcttgtgg
      481 ctacgttggt cgcggtcgtc ttgaagaacc agaaaaaatc gttcttcgta ttgctgaatt
      541 ttttcaagaa gataaagatt tattgcgcga caaaaacgtg ctagttacag ccggcgcaac
      601 tcgcgaaaaa ttagatcctg tacgctattt caccaaccat tccacgggca aaatgggatt
      661 tagtattgca gaatccgcag ctcgtcatgg tgcaaaagtg acgctcgtta cgacaagcaa
      721 agcacttccc gtaccacctg gtgtagaagc aatctatgtc gaatcggcag aagaaatgta
      781 tcaagctgtg gatgaacata aagtgtcaca agatatcttc gtgatgaccg cagcagttgc
      841 cgattacacg ccagcaaaag tatcagacca aaaaattaaa aaacagccgg gcgattttgc
      901 cattgaaatg aaacgaacca aagatatttt actcgaaatt ggtcaacaca aaactgcaga
      961 ccaagtcgtg attggctttg ccgctgaaac agaaaatcta gaagcaaacg cacgtaaaaa
     1021 attaacatcc aaaaatgccg atatgattgt cgctaacaat attagtgtgg caggagcagg
     1081 cttttctggt gatacaaata tcgtgacatt ttaccggaaa gatggttcta gcaaagcgtt
     1141 accgatacta gataaaaaag aagttgctga acatatcatc aaagaaactg ctaacttttt
     1201 aaggaagtga acgaatgatt aatattgcga aagtaattgt ggacgttcca gccatgcaag
     1261 tggatcgtcc atttgactac tatattccag aagatttaga agaacttatt cgtccaggta
     1321 tgcgagtaag tgtcccattt ggaaatcgta aaatacaagg atttgtcatt gctcttggag
     1381 aaacagaaga aaacccaaaa ttaaaaggca ttgacggggt gatggattta gcccccgttt
     1441 taaatgaaga attgatggaa ctaggcgatt ggttagcaga agatacgctg agtttccggg
     1501 tgtctgctta ccaagccatg ttaccagccg cgctacgagc aaaatacgaa aaatattttt
     1561 tgcgcttaga tgaggaaaac gaagaattag agcagctatt tgaaggctac gaaacactag
     1621 actggaaagt ggcagaagcc cgcggtttgc tcaaacaaat tggcaaatgg gtcagagaag
     1681 gtagtgtgga agtagtctac caagtcaaaa ataaaatcac gagtaaaaaa gttcgcgttg
     1741 ttaactgtct caaatcacca caccaactag ctgaaataat agaagatatg ccgaaaaacg
     1801 ccaaagcaca gtcacgtgta ctcgcatttt tccaagcttt tgaaggcaac gaaattacgg
     1861 cagccgagtt aaaaaaacag gcggaaacaa cggatgccac attaaaaaaa ttagtcgact
     1921 tagggatact ttctattcaa gaaaaaattg tttcgcgtga tccctatgaa aaccaccaat
     1981 ttgaaaaaag tgaatcgctt cagttattac cagatcaaca aactgcgtgc gagaaaatca
     2041 ccgcagcaac tgatcaagaa acattcctaa tacacggggt tactggaagt gggaaaaccg
     2101 aaatctattt acaaaccatc gaagcaaaat taaaagaggg taaagaagcc atcgttttag
     2161 taccagaaat ttcccttacc ccacaaatgg tagagcgatt taaaagccgc tttggaagcg
     2221 aggtcgcggt actacatagt gcgctatctt ccggagaaaa atacgacgaa tggcgcaaaa
     2281 tcgaacgcaa agaagcgcgc gttgtcgttg gggctcgttc cgccgtattt gcaccgtttg
     2341 aaaatctcgg cattattatt atcgacgaag agcacgaagc gagttacaaa caagaagata
     2401 atccgcgtta tcatgcaaga gatgtagcca tttggcgcgc aacaaaatat caatgtccag
     2461 tagttctcgg aagcgccacg ccgtctcttg aatcttttgc tagggcgaaa aaaggtgtgt
     2521 atacgttaat cgaacttcct agccgggtca atgatcgggc gatgccagaa gtgagcgttg
     2581 tcgacatgcg cgaagaatta cgcaaagaaa accgcaccga attttcgact gaattactag
     2641 aaaaaatcaa agagcgaatt gccaaaaaag aacaaacagt tttaatgcta aatcgccgag
     2701 gttattcttc ttttgtgatg tgccgtgatt gtggttatgt tgtggaatgt ccgaactgcg
     2761 atatttcgct cacctatcat caatcgagca atcaaatgaa atgccattac tgcggacatg
     2821 aagaacgtgt tccgcaaaaa tgtccgagct gtgagggcga gcatattcgt tattttggca
     2881 ccggtacaca aaaagtagaa gaaagtttga ccaaattaat tccagaagcg cgcgtcatcc
     2941 ggatggacgt ggataccact agaacaaaag gtgctcatga aaaattactc aaaagcttcc
     3001 gcaatcacga agccgatatt ttacttggaa cacaaatgat tgccaaagga ctagattttc
     3061 cagatattac gttagttggc gtattaaatg ctgacacaat gcttcattta ccagactttc
     3121 gcgcttcgga acgaactttc caacttctca ctcaagtaag tggacgag
//
LOCUS       DABQVC010000246         3157 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.246,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000246 DABQVC010000000
VERSION     DABQVC010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3157
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.246"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..94
                     /locus_tag="IBJ56_002688"
     CDS             <1..94
                     /locus_tag="IBJ56_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HAM3418927.1"
                     /translation="IPFSRKLLKPKLTKWLGNQKKHTQYYYFDM"
     gene            251..712
                     /locus_tag="IBJ56_002689"
     CDS             251..712
                     /locus_tag="IBJ56_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HAM3418928.1"
                     /translation="MFTESMLFLLLFLLLGLIAKNNSLIIAVAVVILLKLFHVDGKAM
                     EMIQAKGINWGVTIITVAILIPIATGQIGFKDLIDSFKSAAGWIGLGAGIAVSILAKK
                     GVGYMAVDPQVTVSLVFGTILAVVLFRGIAAGPVIAAGIAYMAMQLVAFIK"
     gene            749..1870
                     /gene="citZ"
                     /locus_tag="IBJ56_002690"
     CDS             749..1870
                     /gene="citZ"
                     /locus_tag="IBJ56_002690"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HAM3418929.1"
                     /translation="MTLSKGLENVYVAETSISSIIDDMLTYVGYGIDDLMENNASFEE
                     VIYLLWHLRLPNKDEFKKFKREIQENMAVSETIITSLRMQNHQKLHPMSVLRTTVSML
                     GVFDTEAELDDGEAVYRKGLRLQAKMPTIVAAFSRIRRGLDPIPPREDLNMAANFLYM
                     ITGEEADALSVEAMNKALVLHADHEFNASTFTARVCVATLSDVYSGVTAAIGALKGPL
                     HGGANERVFDMLEEIDQAGDVRNYIQEKIDTKQKIMGFGHRVYRGGDPRAQHLREMSR
                     KLTAEKGEEKWFDISLQVEESVWELKHLKPNVDFYSASVYHALGIDRDLFTLVFSVSR
                     VSGWLAHIFEQYRDNRLIRPRAIYVGPENRSYLPVEERI"
     gene            1890..3152
                     /gene="icd"
                     /locus_tag="IBJ56_002691"
     CDS             1890..3152
                     /gene="icd"
                     /locus_tag="IBJ56_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HAM3418930.1"
                     /translation="MSQKIQVENGVLKTPNNPVIPFIEGDGTGPDIWAAAKRVLDAAV
                     KKAYNGEKEIAWKEVLAGEKAFKQTGEWLPQATLDTIDEYLIAIKGPLTTPIGGGIRS
                     LNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENTEDIYAGIEFKEGSEE
                     SKKLIDFLKSEFGVDKIRFPETSGIGIKPISKEGTERLVRSAIEYAIKEGRKSLTLVH
                     KGNIMKFTEGAFKNWGYDLCEREYGDKVFTWNEYDRIKEAEGTEVADAKQKEALAAGK
                     ILVKDSIADIFLQQILTRPAEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYLT
                     GHAIFEATHGTAPKYAGLDKVNPSSVILSGTLLLEHIGWGEAAALINQSMEKTIAAKT
                     VTYDFARLMDGATEVKCSEFADELIKNF"
BASE COUNT         1011 a          517 c          687 g          942 t
ORIGIN      
        1 tattccattt tcccgcaaac tattaaaacc aaaattaaca aaatggcttg gaaatcaaaa
       61 gaaacatacg caatattatt attttgatat gtaattaaaa cctctatggg aaaaactttc
      121 tatagaggtt tcattgaaaa aagggcaatt cattttcctt atggcatttt agtattacta
      181 taaggtatgt ttatgatata ataattgtta tctcgcttcc tagatgcgtg atattgaaag
      241 gtgacttaat atgtttacgg aaagtatgtt gtttttactt ctttttttac ttctcggact
      301 tatagcaaaa aataattcgc ttatcattgc tgtagctgtc gttattttgt tgaagttatt
      361 tcacgtcgat ggcaaagcaa tggaaatgat tcaagcaaaa gggataaatt ggggtgtaac
      421 gattattacg gttgctatct taattccaat cgcaactggt caaatcggtt ttaaagattt
      481 aattgattct ttcaaatcgg cagctggctg gattggcctt ggtgcaggaa ttgccgtttc
      541 tatcttagcg aaaaaaggtg taggctatat ggccgttgat ccacaagtga ctgtctcact
      601 agtattcggg accattttag cagtggtgct ttttagaggg attgctgctg gaccagtaat
      661 tgcagctggt attgcgtaca tggcaatgca gttagttgca ttcataaaat aagtacatac
      721 gtaaaaaagg ataaaaggag gaaatgaaat gacgttatct aaaggcttag aaaatgtata
      781 tgttgctgaa acttccatta gctctatcat tgatgatatg ttaacttatg ttggctatgg
      841 tattgacgat ttaatggaaa ataacgcttc ttttgaagaa gtgatttact tattatggca
      901 tttacgtttg ccgaataaag atgaatttaa aaaatttaaa cgagaaatcc aagaaaatat
      961 ggcagtgtct gaaacaatca ttacgagctt aagaatgcaa aatcaccaaa aattacatcc
     1021 gatgagtgtt ttaagaacta cagtttctat gctcggtgta tttgatacag aagctgaatt
     1081 agacgacggg gaagcagttt accgtaaagg tttgcgactt caagcaaaaa tgccaaccat
     1141 tgttgccgct ttttccagaa ttcgtcgcgg actcgatcca attccaccga gagaagattt
     1201 aaatatggca gcaaatttcc tatatatgat tacaggagaa gaagcagatg cattatcagt
     1261 agaagcaatg aataaagcgc tcgtactgca cgctgatcac gaatttaatg cgtctacttt
     1321 tacagcgcga gtttgtgtgg caacgctttc ggatgtttat tccggcgtaa cagctgcaat
     1381 cggtgcgctg aaaggcccgc ttcatggtgg tgccaatgaa cgcgtatttg atatgttaga
     1441 agaaattgac caagctggtg atgtgcgtaa ttacattcaa gaaaaaattg atacgaagca
     1501 aaagattatg ggatttggtc accgtgttta tcgcggcgga gatcctcgtg cgcaacattt
     1561 gcgtgaaatg tccagaaagt taactgctga aaaaggcgaa gagaaatggt ttgatatttc
     1621 gctgcaagta gaagaatctg tttgggaatt gaaacactta aaaccgaatg tcgatttcta
     1681 ttcagcctcc gtttatcatg cgcttggtat tgaccgcgac ttgtttacgc ttgtgttttc
     1741 tgtaagtcgt gtatctggtt ggttagcaca cattttcgag caataccgtg ataatcgtct
     1801 tattcgtccg cgtgcaattt acgttggacc tgaaaataga agttatttac ctgtagaaga
     1861 acgaatttaa tcgaggagga acaaacttta tgagtcaaaa aattcaagta gaaaacggtg
     1921 tgctcaaaac accaaacaac ccagtcattc cttttattga aggggacgga actggtccag
     1981 acatctgggc agctgcaaaa cgcgttttag atgccgcagt aaaaaaagct tacaatggcg
     2041 aaaaagaaat tgcttggaaa gaagtattag ctggtgaaaa agcatttaaa caaacaggag
     2101 aatggttacc acaagcgact ttagatacaa ttgatgaata tttgattgct attaaaggac
     2161 cgcttactac tccaatcggt ggaggcattc gttcgttaaa cgttgccctg cgccaagagt
     2221 tagatttata tgtttgttta cgtccagttc gttatttcaa aggcgttcct tcaccggtga
     2281 aacgtccgga agacacagat atggtcattt tccgtgagaa tacagaagat atatatgcag
     2341 ggattgaatt taaagaaggc agcgaagaat caaaaaaact aatcgacttc ttaaaatctg
     2401 agtttggcgt tgacaaaatt cgtttcccgg aaacttctgg tattggtatt aagccaattt
     2461 ccaaagaggg aacagagcgt ttagtgcgtt cggcgattga atatgcaatt aaagaaggtc
     2521 gtaaatcatt aacgcttgta cacaaaggga atatcatgaa attcacagaa ggagctttca
     2581 aaaattgggg ctatgactta tgtgaacgcg aatatggcga taaagtattt acttggaatg
     2641 agtatgatcg cattaaagaa gcagaaggaa cagaagttgc tgatgcgaaa caaaaagaag
     2701 cgcttgctgc tgggaaaatt ttagtcaaag attcgattgc ggatattttc ttgcaacaaa
     2761 tcttaactcg cccggctgaa tttgatgtag ttgctacaat gaacttgaat ggagattaca
     2821 tttctgatgc acttgctgct caagtaggcg gaatcggtat tgctccagga gcaaacatta
     2881 actacttaac tggccatgca attttcgaag cgacgcatgg tactgcaccg aaatatgcag
     2941 gtcttgataa agtgaatcct tcatcagtta ttttatctgg gacacttctt cttgaacata
     3001 ttggttgggg tgaagcggct gcattaatta atcagtcaat ggaaaaaaca atcgctgcga
     3061 aaaccgtaac ttatgatttt gctcgattaa tggatggtgc gacagaagtt aaatgttcgg
     3121 aatttgcaga tgaattaata aaaaatttct aaaacaa
//
LOCUS       DABQVC010000247         3129 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.247,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000247 DABQVC010000000
VERSION     DABQVC010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.247"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            147..3082
                     /locus_tag="IBJ56_002692"
     rRNA            147..3082
                     /locus_tag="IBJ56_002692"
                     /product="23S ribosomal RNA"
BASE COUNT          892 a          654 c          933 g          650 t
ORIGIN      
        1 agaaagttag taaagttagc atagataatt tattatttat gacacaagta accgagaatc
       61 atctgaaagt gaatctttca tctgattgga agtatcatcg ctgatacgga aaatcagaaa
      121 aacaaccttt acttcgtaga agtaaattgg ttaagttaga aagggcgcac ggtggatgcc
      181 ttggcactag gagccgaaga aggacgggac taacaccgat atgctttggg gagctgtacg
      241 taagcgttga tccagagatt tccgaatggg ggaacccact atctttagtc ggatagtatc
      301 cttacgtgaa tacatagcgt gaggaaggca gacccaggga actgaaacat ctaagtacct
      361 ggaggaagag aaagaaaaat cgatttcctg agtagcggcg agcgaaacgg aaagagccca
      421 aaccaagaag cttgcttctt ggggttgtag gacactctat acggagttac aaaagaaagt
      481 tataaatgaa gcggtctgga aaggcccgcc aaagacggta acagcccggt agttgaaatg
      541 gctttccctc cagagtggat cctgagtacg gcggaacacg tgaaattccg tcggaatccg
      601 ggaggaccat ctcccaaggc taaatactcc ctagtgaccg atagtgaacc agtaccgtga
      661 gggaaaggtg aaaagcaccc cggaagggga gtgaaacagt tcctgaaacc gtgtgcctac
      721 aagtagttag agcccgttaa tgggtgatag cgtgcctttt gtagaatgaa ccggcgagtt
      781 acgatttgtt gcaaggttaa gcggaaaaag cggagccgta gcgaaagcga gtctgaatag
      841 ggcgcataag taacaggtcg tagacccgaa accaggtgat ctacccatgt ccaggatgaa
      901 ggtaaggtaa tacttactgg aggtccgaac ccacgcacgt tgaaaagtgc ggggatgagg
      961 tgtgggtagc ggagaaattc caatcgaact tggagatagc tggttctctc cgaaatagct
     1021 ttagggctag cctcgaggta aagagtcatg gaggtagagc actgtttgga ctaggggccc
     1081 ttctcgggtt accgaattca gataaactcc gaatgccatg tacttatact cgggagtcag
     1141 actgcgagtg ataagatccg tagtcgaaag ggaaacagcc cagaccacca gttaaggtcc
     1201 ccaaatatat gttaagtgga aaaggatgtg gggttgctta gacaaccagg atgttggctt
     1261 agaagcagcc accattgaaa gagtgcgtaa tagctcactg gtcgagtgac cccgcgccga
     1321 aaatgtaccg gggctaaaca tattaccgaa actgtggatg aacctcttta gaggttcgtg
     1381 gtaggagagc gttctaaggg cggtgaagtc agaccggaag gactggtgga gcgcttagaa
     1441 gtgagaatgc cggtatgagt agcgaaagaa gggtgagaat cccttccacc gaatatctaa
     1501 ggtttcctga ggaaggctcg tccgctcagg gttagtcggg acctaagccg aggccgatag
     1561 gcgtaggcga tggacaacag gtagagattc ctgtaccagt gctaattgtt taaccgatgg
     1621 ggtgacacag aaggataggg aatcgcacga atggaaatgt gcgtccaagc agtgagtgtg
     1681 agaagtaggc aaatccgctt ctcgcgaagc atgagctgtg atggggaagg aaattaagta
     1741 cggaagttcc tgatttcacg ctgtcaagaa aagcctctag gaagagtagt actgcccgta
     1801 ccgcaaaccg acacaggtag atgaggagag aatcctaagg tgagcgagag aactctcgtt
     1861 aaggaactcg gcaaaatgac cccgtaactt cgggagaagg ggtgctctat tagggtgcaa
     1921 gcccgagaga gccgcagtga ataggcccag gcgactgttt agcaaaaaca caggtctctg
     1981 caaaaccgta aggtgacgta taggggctga cgcctgcccg gtgctggaag gttaagagga
     2041 gtgcttagct tcggcgaagg tacgaattga agccccagta aacggcggcc gtaactataa
     2101 cggtcctaag gtagcgaaat tccttgtcgg gtaagttccg acccgcacga aaggcgcaac
     2161 gatctgggca ctgtctcaac gagagactcg gtgaaattat agtacctgtg aagatgcagg
     2221 ttacccgcga caggacggaa agaccccgtg gagctttact gcaacctgat atggaatgtt
     2281 tgtaccgctt gtacaggata ggtaggagcc gaagagacgt gtgcgctagc atacgaggag
     2341 gcaatggtgg gatactaccc tggctgtatg accattctaa cccgccacgc ttagcgcgtg
     2401 gggagacagt gtcaggtggg cagtttgact ggggcggtcg cctcctaaag agtaacggag
     2461 gcgcccaaag gttccctcag aatggatgga aatcattcgc agagtgtaaa ggcacaaggg
     2521 agcttgactg cgagactgac aagtcgagca gggacgaaag tcgggcttag tgatccggtg
     2581 gttccgcatg gaagggccat cgctcaacgg ataaaagcta ccccggggat aacaggctta
     2641 tctcccccaa gagtccacat cgacggggag gtttggcacc tcgatgtcgg ctcgtcgcat
     2701 cctggggctg tagtcggtcc caagggttgg gctgttcgcc cattaaagcg gcacgcgagc
     2761 tgggttcaga acgtcgtgag acagttcggt ccctatccgt cgcgggcgca ggaaatttga
     2821 gaggagctgt ccttagtacg agaggaccgg gatggacaca ccgctggtgt accagttgtt
     2881 ccgccaggag catcgctggg tagctatgtg tggcagggat aaacgctgaa agcatctaag
     2941 cgtgaagccc ccctcaagat gagatttccc atttcttcgg aaagtaagat ccctgaaaga
     3001 tgatcaggta gataggtttg gagtggaagt gtagcgatac atggagcgga caaatactaa
     3061 tcgatcgagg acttaaccaa aaaatgaaac gaagttacct aactgaaccc tttcttctct
     3121 agttttgag
//
LOCUS       DABQVC010000248         3113 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.248,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000248 DABQVC010000000
VERSION     DABQVC010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.248"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1168
                     /gene="dxs"
                     /locus_tag="IBJ56_002693"
     CDS             <1..1168
                     /gene="dxs"
                     /locus_tag="IBJ56_002693"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HAM3418931.1"
                     /translation="LGPINGHDIEEVITNLELAKRTKGPVLLHIVTKKGKGYQPAELD
                     SRGTWHGTGPYKVETGSFIKPAKRAASWSSVISNELIRLAEKDERIVAITPAMPVGSK
                     LEKFAKAFPERFFDVGIAEQHATTMAAGLATQGMKPFLTIYSTFLQRAYDQLVHDVCR
                     QKLNVVIGIDRAGLVGADGETHQGIFDISFLNSIPNMTISMPKDEVEARQLMDTAFSY
                     NDGPFAIRYPRGEAPGAQVAESNTLIPIGKWETIIQPIDAVILTFGPTIRLALKAAEQ
                     LELEGYHVGVINARYIKPLDEALLHQILKQKIPILTVEESLLKGGFGASVLEFIEASN
                     YSDVVMHRIGLPDEFISHGSVSIILESFGISTTGIVLKIKEMLAQSGKLRAKRL"
     gene            1165..1989
                     /locus_tag="IBJ56_002694"
     CDS             1165..1989
                     /locus_tag="IBJ56_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HAM3418932.1"
                     /translation="MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPG
                     EKIPIDSELQVKGKQMPYVSRGGLKLEKALQVFDFEVKDKLMLDIGASTGGFTDCALQ
                     NGARHSYALDVGYNQLAWKLRNDDRVTVMERTNFRHVTPADFSEGLADFATIDVSFIS
                     LKLILPVLRTVLVTGGDVMTLIKPQFEAGREQVGKKGIIRDPAVHESVVEHIVQFALD
                     NGYDLMGLDFSPITGGEGNIEFIAHLKWTGGETGTNHLEPNAIAKLITKAHTKLDK"
     gene            2180..2629
                     /gene="argR"
                     /locus_tag="IBJ56_002695"
     CDS             2180..2629
                     /gene="argR"
                     /locus_tag="IBJ56_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HAM3418933.1"
                     /translation="MNKGHRHIIIRELITSNEIDTQEDLVELLLERDVKVTQATVSRD
                     IKELHLVKVPTQTGGYKYSLPADNSFNPHQKLKRALIDCFIGIDNVQFMIILKVMPGN
                     GNSVGALIDNLDWPEKAGTICGDDTCLIICRSEENAKTLTDRFIDML"
     gene            2652..>3113
                     /locus_tag="IBJ56_002696"
     CDS             2652..>3113
                     /locus_tag="IBJ56_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAM3418934.1"
                     /translation="MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGL
                     LVGGRGSADFIRHGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRS
                     GKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASD"
BASE COUNT          983 a          525 c          702 g          903 t
ORIGIN      
        1 tttgggccca attaatgggc atgatataga agaggttatt actaacttgg aattagcaaa
       61 acgcacaaaa gggcctgtac tgctccatat cgttacaaaa aaaggcaaag ggtatcaacc
      121 ggccgaatta gactctcgtg gcacctggca tggtacagga ccttataaag tcgaaacagg
      181 tagctttatt aagccggcta agcgtgcagc gtcatggagt tcagttatta gcaatgaatt
      241 aatacgtttg gcagaaaagg atgaacggat tgttgcgata actccggcaa tgcctgttgg
      301 ctctaaatta gaaaaatttg cgaaagcttt cccagaacgc ttttttgatg ttgggattgc
      361 ggaacagcat gcgacaacaa tggcagcggg gctagcaaca caagggatga aaccgttcct
      421 tactatttat tccacttttt tacaaagagc ctatgatcag ttagttcatg atgtttgccg
      481 gcaaaagttg aatgtggtca ttgggattga ccgggccggg cttgttggcg ctgatggcga
      541 aacacatcaa ggtatctttg atatttcatt tttaaatagt attccaaaca tgactattag
      601 catgccgaaa gatgaagtgg aagctagaca attaatggat actgcgtttt cgtataatga
      661 tgggcccttt gcgattcgct atccacgcgg cgaagctcct ggtgcgcagg tagctgagtc
      721 taatacgctt ataccaatcg gaaagtggga aacaatcatt cagccgattg atgctgttat
      781 tttaaccttt ggccctacca tccggctagc gctaaaagca gctgaacaat tagagttaga
      841 aggataccac gttggagtaa ttaatgcgcg ctatattaaa ccgttagacg aagcactttt
      901 acaccaaatc ttaaagcaaa aaattcccat tttaacagta gaagaatcac tattaaaagg
      961 tggatttggt gcgagtgtgt tagaatttat agaagcgagt aattatagcg atgttgtaat
     1021 gcatcgaatc ggtttaccag acgaatttat tagccatggt tctgtatcca taattttgga
     1081 atcatttggc atatcaacaa ctggaatagt attaaaaata aaagaaatgc tcgcacaaag
     1141 cgggaagtta agggcgaaga gactatgaca ataaaaaaag aacgcgcaga tattctgcta
     1201 gtagaacaag gactatttga aacaagagaa aaggcaaaac gtgcaattat ggcgggaatt
     1261 gtttatcgga aagaagaacg tgtagataaa cctggagaaa aaatccctat tgatagcgaa
     1321 cttcaagtaa aaggaaagca aatgccttat gttagtcgcg gtggattaaa gctagaaaaa
     1381 gcattgcaag tatttgattt cgaagtgaaa gataaactta tgctggatat cggagcatca
     1441 actggtggtt ttacagattg cgctttacaa aatggggcaa gacactctta tgcgctcgat
     1501 gttggctata atcagcttgc atggaaactg cgcaacgatg atcgcgtcac tgtgatggaa
     1561 agaactaatt tccgtcatgt aacgccagct gatttttccg aaggtttagc agattttgca
     1621 acgattgatg tatcctttat ttcactcaaa ctaattttac cagtacttag aactgtgctt
     1681 gtaaccggtg gcgatgtgat gacacttatc aaaccacaat ttgaagcagg tcgagagcaa
     1741 gtcggtaaaa aagggattat tcgtgatcca gcagtacatg aatcggtagt tgaacatatt
     1801 gttcaatttg cgctcgataa tggttatgat ttgatgggac ttgatttttc acctattaca
     1861 ggtggagaag gaaacatcga atttatcgcg catcttaaat ggactggtgg ggaaactgga
     1921 actaatcatt tggaaccaaa tgcgattgcg aaacttatca caaaagcgca tacaaaatta
     1981 gataaataat gtataccgga aagcagtgat gttttccggt ttttgctttt atcatgctgt
     2041 tttggctcat tttgcaatgt attacctatg tataaagtat taaagaaact tttcttgcat
     2101 aaatttgcac taaatccgtg actttatgcg ttttttcgga taagatgtaa gtagaaaatt
     2161 atcgtgaggt gaagaaggaa tgaataaagg tcatcgtcat attattattc gagaattgat
     2221 tacatccaat gagattgaca cgcaagaaga tttagtagaa cttctgttag aacgcgatgt
     2281 taaagtcacc caggcaactg tttcccgtga tattaaagaa cttcatcttg tcaaagttcc
     2341 aacacaaaca ggtggttaca aatacagtct acctgccgat aatagtttta acccacatca
     2401 aaaattaaaa cgcgctttga ttgattgctt tattggcatt gataacgtgc aatttatgat
     2461 tattttaaaa gtaatgccag gaaatggaaa ctcggttggt gcattaatcg ataacttgga
     2521 ctggccggaa aaagccggaa ctatttgtgg agatgacact tgtttaatta tttgtcgctc
     2581 ggaagaaaat gcgaaaacat taacagatcg ttttatagat atgctttaaa atttgttgga
     2641 ggtgaaagat tttgcttcaa gaaatgacaa ttaaaaactt tgctatcatc gaatcgcttt
     2701 ctttaacttt tcaagaaggg atgacggtac ttacggggga gaccggcgct ggtaaatcaa
     2761 ttattattga tgcgcttggt cttcttgttg gcggacgcgg gtcagctgat tttatccgtc
     2821 atggagaaga acgtttagaa cttcaagggc tttttgcgct agcagaggat aaccttgctt
     2881 gccgaaatgc gttaattgaa aatgggatag atgcttcgga tgatatggtt gtactagaac
     2941 gcagcctgtt tcgctcgggg aaaaatagtt gccgaattaa tggcaaactt gtaactaccg
     3001 ttctcttgcg tcaaattggc tcgaaattaa tagatatcca tagtcagcat gaacatcagg
     3061 aattgatgaa tgaggagttt catttgtcat tacttgatcg tttcgcttct gac
//
LOCUS       DABQVC010000249         3059 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.249,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000249 DABQVC010000000
VERSION     DABQVC010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.249"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(1..250)
                     /locus_tag="IBJ56_002697"
                     /pseudo
     CDS             complement(1..250)
                     /locus_tag="IBJ56_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464266.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
     gene            complement(315..824)
                     /locus_tag="IBJ56_002698"
     CDS             complement(315..824)
                     /locus_tag="IBJ56_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3418935.1"
                     /translation="MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSD
                     MLISISEVLETPVSTLLGETVMVSKVDDVKAISEKLEIINLQLAQRKTARRKMLYWLF
                     VSLCAVIAIISSVFIILNSPYLGWDYSDPETSVIGVAFHTFEWLFVRLAPIILIGGVV
                     GIFLTRKNV"
     gene            complement(1101..3005)
                     /locus_tag="IBJ56_002699"
     CDS             complement(1101..3005)
                     /locus_tag="IBJ56_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HAM3418936.1"
                     /translation="MKKAFLCLSAVVLSLNFVWVNPLSGLASKIETTKLKSTMDTNQQ
                     VNLKNNATDIVTSEDLGGQTWLINEVNRQLAPKKVGVDLTFDDLAKIKIISLSNKSLT
                     GEVPPEIKNLVSLEKLLLYSNKLSGEIPAELGELTNLSELRLDYNQFTGKIPDGLGKI
                     SSIALQNNELVGQIPLSLYENRTGTNEVNVSGNQVTINSREPEPSIYSYSTFIYPATT
                     PQYSGHLTATTTYFSNVTNDTLLTPFLSGSSTFIDLHAEFMLDRELFEGHEVTITDES
                     SGKILYEGELNSDISISLKSFSSGYHNIRVVLDNAPNNPQNQVTFGISMASTVAGDLT
                     VNYVDEDGKTIHDPQIVSGFVGDDYDVTTPDYELVIDGYELDTSKLPTNGMGTFDYAP
                     LSVTYVYKKMEGAPVTVKYVDENGNEITTSDTLTGKLDDSYHAKAKEITGFTLDNSKL
                     PVNASGVFETNPQTVTYVYNAVPAKIKAHDSTIYVGDTWSAEDNFDSAVNSVGAAVSF
                     DDVKVEGKVDTTKAGVYPVTYSFSGEAVTINVTVKAKVIPAPPVTPVQPINPDQPNIP
                     NTPSVDQTHVAKPGNLKVTKTQPTVAGKIKLPTTGDNLWDSVLYSVFGLIAVCVAFSL
                     FFWRKKQKHS"
BASE COUNT          889 a          620 c          501 g         1049 t
ORIGIN      
        1 tcttcttcaa acgtttatag ctattatctt tatcaacatc aacaaagcca tatcttttct
       61 cgaaaccttc acgtgttgaa taaagagcta ttattcacta aattagataa acgtttatgt
      121 cacaaccttc ttcaatggct tcttgcatac gcgcaatatg tgaggccaaa taatcaattc
      181 ggtacgtaga atcaattgtc tagccccgtt cggttgtttg acaatatggg tttggtgctt
      241 tgattccgtt cctttttaca aacagtaatt ttgaagtctg actcatccct aaaagcatcc
      301 aagatagtac gcttttatac gttcttccgc gttaaaaaaa tcccaacgac tcctcctata
      361 aggataatcg gtgctaatct gacaaacaac cattcaaatg tatgaaaagc tactccgata
      421 acgctagttt cagggtcact ataatcccaa cctaagtaag gactatttag tattataaag
      481 accgaagaaa ttattgctat aacggcacac aacgagacaa atagccaata aagcattttt
      541 cgtctggcgg tctttctttg tgcaagctgt aagtttataa tctccagttt ttcggagatc
      601 gcttttacgt catcaacctt tgaaaccata acagtttctc caagcaaagt gcttactggt
      661 gtttcaagca cttccgatat ggagattaac atatcagaat caggaactga caatccttgc
      721 tcccatttag agattgtttg tcgcaccaca ttcagtttga tggcaatttc ttcttgcgaa
      781 agtccttttg atttcctgat tgctttaata ttttcgttta acattagaga tacccacctt
      841 tcttccagtt gttatcacta ttgtatgaga actcgtccat tgctacaagc aacgcatatt
      901 aacattcaaa ctttatagcc acgatatgca gttttgtatt tactatcaca tccatagtac
      961 ctttcaatca taaaaatatt attttgcttt ctttaattca gaataggacg taaagttatt
     1021 ttttgctggt ataccgtttt tagttggtat ctctttagca cattaccctt ttaaaatagg
     1081 cagcctagtt ctaatatatt tcagctatgc ttttgctttt tacgccagaa gaataaacta
     1141 aatgcgacac atactgctat taaaccaaat acactataca gcacactatc ccaaagatta
     1201 tcccctgtag ttggtagttt tatttttcct gctactgtag gttgtgtctt tgttaccttt
     1261 aaatttccag gttttgcaac gtgagtctga tctacgctag gtgtatttgg aatgtttggt
     1321 tggtctggat taattggttg aacaggtgtt actggtggtg ctggaataac tttagctttt
     1381 acagttacat taatagtcac agcttccccg gaaaaactat aagtaaccgg ataaacacct
     1441 gcttttgtcg tgtctacttt cccttctact tttacatcat caaaggaaac tgcagctcca
     1501 acagaattta ctgcgctatc aaaattatcc tctgcgctcc atgtatctcc tacgtaaatc
     1561 gtggaatcat gcgctttaat ttttgcaggt actgcattat acacgtaggt gactgtttgt
     1621 ggatttgttt caaaaacgcc gcttgcattg actggtagct tactattatc taatgtaaat
     1681 ccagtaattt ctttcgcttt tgcgtgataa gaatcatcta gttttccggt caaagtgtca
     1741 gaagtagtga tttcgttgcc gttttcatct acgtatttta ctgtgacagg tgcgccttcc
     1801 atttttttat agacatacgt gacagatagt ggcgcgtagt caaaagtgcc catcccattg
     1861 gttggtaatt tggaagtatc taattcgtac ccatcaatta ctaattcgta gtcaggcgtt
     1921 gttacatcat aatcatcacc tacaaatcca ctaactatct gtggatcatg aatcgttttt
     1981 ccatcttcat ctacatagtt aactgtcaaa tcaccagcca ccgtacttgc catgctgata
     2041 ccaaaagtta cttggttttg tgggttgttc ggcgcattat caagtacaac tcgaatatta
     2101 tgatagcctg agctgaaact tttcaaagaa atactaatgt cagaatttaa ctcaccttcg
     2161 taaagtattt taccagaaga ctcatctgta attgttacct catgaccttc aaaaagttcc
     2221 ctatctaaca taaactccgc atgcaaatca ataaaagtag aactgccaga aagaaaagga
     2281 gtaagcaatg tatcattcgt tacgttgcta aaataagtgg ttgttgccgt caaatgccca
     2341 ctatattgag gtgtagtcgc tggataaata aaagttgagt aggagtaaat acttggttcc
     2401 ggctctctac tattaatggt cacttggtta cctgatacat ttacttcatt tgttcctgtt
     2461 cgattttcgt ataagctcaa aggaatttgg ccaaccagtt cgttgttctg taacgcaatt
     2521 gacgaaatct ttccaagtcc atcaggaatt tttccagtga attgattgta gtctaatcga
     2581 agttctgata aattcgttaa ttcccctaat tcagcaggaa tctctcctga tagcttatta
     2641 gaatataaaa gcaatttttc aagagatact aaatttttaa tctccggtgg tacttcacca
     2701 gtaagcgatt tattactcaa tgaaatgatc ttaattttag ccaaatcgtc aaatgttaaa
     2761 tccacaccga cctttttagg cgctaattgt ctgtttactt cattaatcaa ccacgtctgc
     2821 cctcctaaat cttccgaagt aacaatatcg gttgcattat ttttcaaatt aacttgttgg
     2881 tttgtatcca ttgttgattt caattttgtt gtttcgattt tggatgccaa cccagaaagt
     2941 gggttaaccc acacaaaatt taatgacaaa acaacagcgg ataggcatag aaacgctttt
     3001 ttcattcgtg tataacctcc agtaatattt attactccta aaattatacg ctaaacagc
//
LOCUS       DABQVC010000250         3032 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.250,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000250 DABQVC010000000
VERSION     DABQVC010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.250"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..759)
                     /gene="lde"
                     /locus_tag="IBJ56_002700"
     CDS             complement(<1..759)
                     /gene="lde"
                     /locus_tag="IBJ56_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Lde"
                     /protein_id="HAM3418937.1"
                     /translation="MENWKKNLYVVWVGCFLTGTGLNLIMPFLPLYIEELGVHNPDQV
                     SMWSGIALSSTFLVSAIMSPIWGKLADQKGRRIMLLRAALGMAIAMILMGLVSNVYQF
                     VGLRLLMGIFSGYISTANALIATQVPRHRSGWALGALSTAAVSGVLIGPLIGGALSDT
                     LGVRPVFYITGALLLGSFFLTLFFVKEKFTPVEKKEMRSGKEVFLSLKNPGLIISLFI
                     TTMMIQIASNSVNPILTLYVRDLAGNAQNIAFISG"
     gene            complement(876..1223)
                     /locus_tag="IBJ56_002701"
     CDS             complement(876..1223)
                     /locus_tag="IBJ56_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418938.1"
                     /translation="MNQTFIVKKEHVSQYPNPLFVNKNESIWVFEEDTEYPGWIFCKV
                     KSTGKEGWVPKQIIQLSNDGKSGTVSEDYSARELNVKPGDKLESNRELNGWVWCVTEE
                     NEAGWVPRENLEA"
     gene            complement(1242..1886)
                     /gene="fsa"
                     /locus_tag="IBJ56_002702"
     CDS             complement(1242..1886)
                     /gene="fsa"
                     /locus_tag="IBJ56_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HAM3418939.1"
                     /translation="MRFFIDTANVEEIKKANRMGFIAGVTTNPSLVAKEGRDFNEVIQ
                     EITSIVDGPISGEVVSLEADEMIAEGRVIAKIHPNMVVKIPMTGEGLAAVKVLTEEGI
                     KTNVTLVFSATQALLAARAGATYVSPFLGRLDDIGDDGLVLIRDIADIFEIHGIPTEI
                     ISASVRHPIHVIECAKAGADIATVPFKVFEQMLKHPLTDSGIDKFLADWEAAKK"
     gene            complement(2027..2716)
                     /locus_tag="IBJ56_002703"
     CDS             complement(2027..2716)
                     /locus_tag="IBJ56_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3418940.1"
                     /translation="MLFLKELESNLTVSKLMELCFEHPSYKDYCSVISTKKGEVLESL
                     SPAGTKVYFVLSGIYGMIVEEDAEMEEESYKESIVRFLQKGDSFGLYHLFYDEWSPHV
                     SMQSLGHGEVMEVDSNFLFSIFDKKDENNFFMIKVMAEELREAHTFAKLSFLKKEERI
                     RKAILKCAQTLGTFSDNGILLPREITQEVLARYTNTSREYVAHTVMHLIKEDIIRNRP
                     KPLLVMDKTRL"
BASE COUNT          899 a          669 c          470 g          994 t
ORIGIN      
        1 cccactaata aaagcgatgt tttgcgcatt tcctgccaaa tcacgcacgt ataatgtcaa
       61 aatcgggttc actgagttgg acgcaatttg aatcatcatt gtcgtaataa ataaggaaat
      121 aatcaagccc gggtttttaa gcgataagaa aacttctttc cctgaccgca tttccttttt
      181 ttctactggt gtaaatttct cttttacgaa gaacagtgtg aggaaaaagc tacctaaaag
      241 aagtgctcct gtgatgtaaa acactggtct gacgcctaat gtatccgaca acgctccgcc
      301 aattaacggg ccaattagca cacccgaaac cgccgccgta gataatgccc cgagagccca
      361 gccgctacga tgacgaggaa cttgtgtagc aataagggca tttgctgttg aaatatatcc
      421 tgaaaaaatc cccattaata agcgcaaacc aacaaattgg tatacattgc ttacgagtcc
      481 catcagaatc atcgctatcg ccatacctag cgcagctcgc aaaagcataa ttctccgccc
      541 tttttggtca gctagtttac cccaaattgg tgacataata gctgatacta aaaaggtcga
      601 actgagtgca atccctgacc acatgcttac ttgatccgga ttatgcactc ctaattcttc
      661 aatatacaat ggtaaaaatg gcatgattaa atttaatccg gttccggtta gaaagcaccc
      721 cacccagaca acatacaaat tcttcttcca attttccata aacccaccta gattcttcta
      781 tcgttatcct taattattcc acaaaaaaag cgaaagtaaa actaaaccct tcgctttttt
      841 gctatatttg cgtaaaatgt ttcacgtgga acattttatg cttctaaatt ttctcgtggt
      901 acccaaccag cttcattctc ttctgttacg caccaaaccc aaccattaag ttcacgatta
      961 ctttctaatt tatcgcctgg tttaacattt aattcgcgcg cagagtagtc ttctgatacg
     1021 gttccactct ttccatcatt actcaattga ataatttgtt taggaaccca gccttctttt
     1081 ccggttgact tcactttaca aaaaatccag cctggatatt ctgtatcttc ttcaaacacc
     1141 caaatagact catttttatt cacaaaaagg ggatttggat attgactaac atgttctttt
     1201 ttcacgataa atgtttgatt catagttaga aacctacctc tttatttttt cgccgcttcc
     1261 caatctgcaa gaaatttgtc aatcccactg tcggtcaacg gatgttttag catttgttcg
     1321 aacactttaa atggcaccgt agcaatgtca gctccggctt tggcacattc aataacgtgg
     1381 attgggtgtc gcacacttgc tgaaataatt tctgttggaa tcccgtgaat ctcgaaaata
     1441 tccgcaatgt cacgaattag aactaagcca tcgtcgccta tatcatctaa tcgacctaaa
     1501 aacggtgata cgtatgttgc gccagctcgt gctgcaagca aggcctgtgt ggcagaaaac
     1561 acaagtgtta cattggtttt aatgccttct tctgtcaaca cttttacagc tgccaaacct
     1621 tcgcctgtca tcggtatctt tacaaccata ttcggatgga tttttgcaat aactcgacct
     1681 tccgcaatca tctcatctgc ttctaaactt actacttcgc cactaatcgg tccgtcaaca
     1741 atggatgtga tttcttgaat gacctcatta aaatcgcgac cttcttttgc aacaagtgat
     1801 ggatttgtcg tgactccggc aatgaatccc attctgttag cctttttaat ctcttctacg
     1861 ttcgctgtat cgataaaaaa tctcattaaa acatcctcct tttctatcaa gcgctttcaa
     1921 ttacagagcc attataacgc aaaaatttaa ataatgcttt tgaagtgctt ttccacaaaa
     1981 aaaagaatgc cactgagcat tccaaaaagt ttcacgtgaa acaaaattat aatcgagttt
     2041 tgtccatcac taggagaggc tttggtctat ttctaattat atcctcttta attaaatgca
     2101 tgactgtatg agccacgtat tctcgtgatg tatttgtgta tcttgcaagt acttcttgcg
     2161 tgatttctct tggtagcaat atcccgttat cagaaaacgt tcctaaagtt tgagcgcatt
     2221 tgagaatggc tttgcggatt cgttcttcct ttttcaagaa gcttagtttt gcaaatgtat
     2281 gggcttcacg taattcttct gccatcactt taatcataaa aaagttgttc tcatcttttt
     2341 tgtcgaaaat agagaacaag aaattgctat ctacttccat aacttctccg tgacctaagc
     2401 tctgcatcga aacatgcgga ctccattcat cgtaaaaaag atgatatagt ccaaaactat
     2461 ctcctttttg caagaaacga acaatgcttt ctttatagct ttcttcttcc atttctgcat
     2521 cttcctctac aatcatcccg tatatgccgc ttagaacaaa atatactttt gttccagccg
     2581 gacttaaact ttctagaacc tcacctttct tggtgctgat aaccgagcag tagtctttgt
     2641 aacttggatg ttcaaagcac aactccatta atttgctaac cgttagattg gattcaagct
     2701 cttttaagaa tagcatattc tctcctttgc tatattatat tgaagaaact cttcgtaatt
     2761 atatcataaa ggctgtattc aaaatcctat tcacagtcag tcataaaaag ctaaaaacct
     2821 aattaaagat aaatatatta caacttttta taaaatactt aatttatatc tcgtttttcg
     2881 ttagtgtttt atcctaaatt cgaacttttt gttactttta ttaaatattt aaagtcagat
     2941 aataattcaa taactaccac tttagactgg tttattttta gataaattga ttatacttaa
     3001 aaagtaagta atttatggat gggtaactca gg
//
LOCUS       DABQVC010000251         2938 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.252,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000251 DABQVC010000000
VERSION     DABQVC010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2938
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.252"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(29..301)
                     /locus_tag="IBJ56_002704"
     CDS             complement(29..301)
                     /locus_tag="IBJ56_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418941.1"
                     /translation="MLFDIDGIEYNTDDYEQYDMYKQSVVRNVMYKAYRSLRSVVSDN
                     KCQGLKQKEVKEKINNNRSQVYQLLSFTDEEINSIFIFIEKYFPRI"
     gene            complement(307..618)
                     /locus_tag="IBJ56_002705"
     CDS             complement(307..618)
                     /locus_tag="IBJ56_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HAM3418942.1"
                     /translation="MHMTSKHYNLINTNQLMKFYKCKEWLSLRQEALKRDNYECQRCK
                     KKGKQRQADCVHHIKYVKEFPAFALTLSNLECLCNQCHNEEHERLPNQQEKKIINQER
                     W"
     gene            complement(1198..1623)
                     /locus_tag="IBJ56_002706"
     CDS             complement(1198..1623)
                     /locus_tag="IBJ56_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF722 domain-containing protein"
                     /protein_id="HAM3418943.1"
                     /translation="MSKRLRQAHYKLIEDELRYYHSTKKEILEKRANIVMGSIHQEFK
                     DENQGGGSSGQISNEVEQRVMLLQVDKEIQRMSDIVRAIDTVLSTLSDEDKQLIHFRY
                     WDRSRPTWLWIACKLNISESTAKRKRKEIIYKIAARLGY"
     gene            complement(1624..2265)
                     /locus_tag="IBJ56_002707"
     CDS             complement(1624..2265)
                     /locus_tag="IBJ56_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HAM3418944.1"
                     /translation="MFTHIRKFISKWNSNQDIYIEQMSREETIPFNKEETMTLYHVET
                     EEDYDALMLELEEEGCVWGYTGNKPTKDGHWYIFKGDTVIDKYDIYLGVASKGYCEKV
                     YLNIPIQKYKTRKDKIKEDVEYFSKCNEQIMESVYEFIHQDNNDIVNNPSHYTSGGIE
                     TLDYIKAKVKDYPSYAAGNILKYVSRYEYKNGIEDLKKAQFYLNDLIEWMESD"
     gene            complement(2535..2855)
                     /locus_tag="IBJ56_002708"
     CDS             complement(2535..2855)
                     /locus_tag="IBJ56_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009928016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VRR-NUC domain-containing protein"
                     /protein_id="HAM3418945.1"
                     /translation="MTAEMDIQNSIRLALAKKGHYVFRANVGKIRMPNGRIFDTGLPK
                     GFPDLFGFRGTDGKMFFIEVKNEIGKLRQEQRNFQQAMEITPAICGVARSVEEALRIV
                     EGLK"
BASE COUNT          858 a          619 c          409 g         1052 t
ORIGIN      
        1 aagttttaaa atttttaccc ggggggtatt aaatccgtgg aaaatatttt tcaataaaaa
       61 taaaaataga atttatttct tcatcagtaa atgaaagcaa ctgatacact tgcgacctat
      121 tattatttat tttttctttc acttcttttt gcttcaaacc ttgacacttg ttatcagaca
      181 caacagaccg cagcgaacga tatgctttat acatcacatt gcgcactaca ctttgcttat
      241 acatatcata ttgttcatag tcatctgtgt tgtactcaat tccatcaata tcaaataaca
      301 atcacatcac catctttctt gattaataat cttcttctct tgttgattag gcaaacgctc
      361 atgctcttcg ttatgacatt gattacataa acattcgaga ttacttaatg ttaacgcaaa
      421 agcgggaaac tcttttacat atttaatatg atgtacacag tccgcttgac gttgcttacc
      481 tttcttcttg catcgttggc attcatagtt atcacgcttc aatgcctctt gcctgagaga
      541 caaccactct ttgcatttat aaaacttcat caactgatta gtattgatta agttataatg
      601 tttagatgtc atatgcatat gtattacccc tatataaaaa gcccaacact aatgtgctgg
      661 acttcattgt tctatgtatc cgtagttata aaaccaggcg gacttctacg gtagcattcg
      721 tcaatgcttt gtctttcttc taattaaccc tcagacgggc tcgcggacgt cagaaagcgg
      781 aaattataaa gccttcccat cagaacatat ctgctattaa atagagagaa ggtattgtcg
      841 tttaaatata ctcggcaagg atttgcacct tgcaacatca agccgaagcg tgatatagga
      901 ctcatccata acgtctacct gttccgtcac gagtattgag attgaacaag aaggtgtctc
      961 ttgttgggac tagtgagatt ggaatgggat gcgtctccca tcaagaccaa cgatcagata
     1021 ataagcctct gtccggcaac atagcaacct cctgctatat catcatcatg tgattatata
     1081 tgagaagtga agtgcagact taatatatta ttttattttg taatcatctt cacttctcta
     1141 ctctataata ttaacatgga aaaacatgtc aaacgggtca taaacgggtc aactttttta
     1201 ataacctaat cgcgcggcaa ttttatatat aatctctttc cgttttcttt tagccgtact
     1261 ttcactgata ttcaacttac aagcaatcca caaccaggta ggtctactcc tatcccagta
     1321 tctaaaatga atcagttgct tatcttcatc agacaaagtg ctcaataccg tatcaattgc
     1381 tctgacaata tcagacattc tttgtatttc tttatcgact tgtaatagca taacacgttg
     1441 ttctacttca tttgatatct gaccagatga accaccgcct tggttttcgt ctttgaattc
     1501 ttgatgtata gatcccatga caatgtttgc gcgtttttct agtatttctt tttttgtaga
     1561 atgatagtaa cgaagttcat cttcaatcaa tttataatgc gcttgtcgta atcgttttga
     1621 catttaatca ctctccatcc actcaattaa atcattcaaa taaaactgcg ctttcttcaa
     1681 atcttcaatg ccgtttttgt attcataacg cgaaacgtat ttaagtatat ttccggctgc
     1741 ataactcgga taatctttta ctttcgcctt aatgtagtca agggtttcaa tgcctcccga
     1801 cgtgtaatgc gatgggttgt ttacgatgtc gttattatct tgatgtataa attcgtatac
     1861 gctttccata atttgttcgt tacatttcga aaaatactct acatcctctt taattttgtc
     1921 tttcctcgtt ttatattttt gaattggtat atttaaatat actttttcac aatatccttt
     1981 tgacgccaca cccaaataaa tatcatattt atctattaca gtatctccct taaaaatata
     2041 ccagtgacca tcctttgtag gtttattgcc tgtatagccc cacacacatc cttcttcctc
     2101 caactccaac atcaatgcat catagtcttc ctctgtttca acgtgatata gtgtcatagt
     2161 ttcctccttg ttaaatggaa ttgtttcttc acgactcatt tgttcaatat aaatatcttg
     2221 attagagttc cacttgctta taaattttcg aatatgggtg aacaatttta tctcctccaa
     2281 gagtccaata acagttcaag ttcttcaaga ctatgtcttt taaataatag ttttccaatt
     2341 gcataaccat aaaatttcaa ttttgagaaa cattttaaat taccaaggtc tgtaaatata
     2401 tatttctcat ttcctaagtc aacaaaaaaa ttcatcatag tttacactcg gaacatacct
     2461 ttcattactt tgtataaatt cttcaaattc atatttagtt tctgcctgat ttccacatat
     2521 aacaagaaat cttttcattt taatccctcc acaattcgca atgcttcctc tacactccta
     2581 gctactccac atatggcagg tgttatttcc atcgcttgtt gaaagtttct ctgctcttgc
     2641 cttaacttcc cgatttcgtt tttcacttca ataaagaaca tttttccatc cgtcccacga
     2701 aaaccgaata aatctggaaa cccctttggt aaacctgtgt caaaaatacg tccattcggc
     2761 attctaattt tccccacatt ggctctgaaa acataatgtc ctttttttgc taaggctaag
     2821 cggatagaat tttgtatatc catttctgct gtcattagat cactcctttg tcaaaaatga
     2881 taaaaaggtg gatagttggt ggatagttga agcaaaccct ccaccttcga aatccatt
//
LOCUS       DABQVC010000252         2837 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.253,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000252 DABQVC010000000
VERSION     DABQVC010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.253"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            7..135
                     /locus_tag="IBJ56_002709"
     CDS             7..135
                     /locus_tag="IBJ56_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid D-Ala incorporation-associated
                     protein DltX"
                     /protein_id="HAM3418946.1"
                     /translation="MLQHPATIFTMKTFFYLVVLLGLLWFYGFKNPEGAKFIYNEF"
     gene            172..1704
                     /gene="dltA"
                     /locus_tag="IBJ56_002710"
     CDS             172..1704
                     /gene="dltA"
                     /locus_tag="IBJ56_002710"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HAM3418947.1"
                     /translation="MTTSIIERIDAWAEKTPDFPCYEYAGTRLSYKELKRQSDAFGSF
                     LLKNLNTDKEKPIIVYGHMSPLMLVAFLGSIKSGRAYVPVDVSMPVERIEQIKKAADP
                     SLFICTEELPSNLTITGCPVLTQDQLMDALEKHFGEVPDKEACVKNDDNYYIIYTSGS
                     TGNPKGVQISQNNLVSFSNWILQDFSLSQGLRFLNQAPFSFDLSVMDLYPSLLSGGTL
                     VPLDKTITANMKDLYREIPAQNLDVWVSTPSFADLCLLDDNFNQENNPGLIRFLFCGE
                     VLAKKTASELLNRFPDAVIYNTYGPTEATVAVTQVKVTREVIDAYPSLPLGVIKPDMR
                     LHIVDQETGEVLPEGEKGEIVLIGASVSKGYLNEPEKTDQVFFDYKGYQAYRTGDSGI
                     IKDGYLFFQGRLDFQIKLHGYRIELEDIENNLKKVSYIQNCAIIPKMKDEKVDMLVAQ
                     VIPTNHDFEKEYQLSAAIKNELKEFMPAYMIPRKWIYKTEFPLTMNGKIDRKALNSEV
                     NK"
     gene            1701..>2837
                     /gene="dltB"
                     /locus_tag="IBJ56_002711"
     CDS             1701..>2837
                     /gene="dltB"
                     /locus_tag="IBJ56_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltB"
                     /protein_id="HAM3418948.1"
                     /translation="MSLPYGTILYFGVLVLFLIPIIVAGLLGKRLPIYNAFVTLVFLY
                     FMFSASPVQGATFIFFVFWQLALVRLYFHYRQEKKQNHGGVFVIAVILSILPLIISKV
                     VPILGDNVTMVGFLGISYLTFKAAQMIIEIRDNLIKQYNAWDFVNFLLFFPTISSGPI
                     DRFRRFKKDVDNPPSKEAYLALLNRGIFLIFLGFLYKFIIAYLVNKHFVVPLDIAITH
                     HVDTTKSLIGYMYAYSMYLFFDFAGYSAFAVGVSYLLGVQTPMNFNKPFAARNIKEFW
                     NRWHMTLSFWFRDYVFMRFVFWVTKKKWFKSKFTIAYLAYFVNFFIMGVWHGLHWYYI
                     VYGLYQATLIVGFDLFERFNKKYKFYPKNKITYVIGVFITFQFVC"
BASE COUNT          893 a          534 c          503 g          907 t
ORIGIN      
        1 aaactcattt tgcaacatcc agcaactatt tttacaatga aaactttttt ctaccttgtt
       61 gttttgctag gattgctttg gttttatggt ttcaaaaacc ctgaaggtgc gaaattcatt
      121 tacaatgaat tctaaaagaa gaaaggactg ttaaaaatgg gaatatcaat aatgacaacg
      181 agtatcatag aaagaattga tgcatgggca gagaagacac cggatttccc ttgctatgaa
      241 tatgctggaa cacgtctttc ctataaagaa ctaaaacgac aatctgatgc attcggctct
      301 tttctactaa aaaacctaaa tactgacaaa gaaaaaccta ttatcgttta cggacatatg
      361 tctcccctaa tgctagttgc atttttaggc tctatcaaat caggtcgagc ttatgtacca
      421 gtagatgttt ctatgccagt tgaacgtata gaacaaatta aaaaagcagc tgatccttct
      481 ttgtttattt gtacagaaga gctacctagt aaccttacta ttactggttg tccggtacta
      541 acacaagatc agctaatgga cgccttagag aaacatttcg gagaagttcc agataaagaa
      601 gcatgtgtaa aaaatgatga taactactat attatttaca catccggaag tacaggaaat
      661 cctaaagggg ttcaaatcag tcaaaacaat ctagtaagtt ttagtaactg gatattacaa
      721 gacttttctt taagccaagg attgcgtttc ttaaaccaag cacccttttc cttcgatcta
      781 tccgttatgg atttatatcc aagtttacta tcgggtggaa cgcttgtacc tcttgataaa
      841 acaattactg cgaatatgaa agatttatat cgtgaaatac ctgctcaaaa cttggatgta
      901 tgggtttcta ctccttcttt tgctgatttg tgcttactag acgataactt taaccaagaa
      961 aataaccctg gcttaattcg tttcttattc tgtggtgaag tacttgccaa gaaaacagca
     1021 agcgaattgc tgaatcgttt cccagatgca gttatttaca acacatacgg acctacagaa
     1081 gcaaccgtgg ctgtcactca agtaaaagta actcgagagg ttatcgatgc ttatccaagc
     1141 ttaccacttg gcgttattaa accagatatg cgtttacaca tcgttgacca agaaactggt
     1201 gaggttcttc cagaaggcga aaaaggagaa attgtcctga ttggtgctag cgtttctaaa
     1261 ggttacttaa atgaacctga aaaaacagac caagtattct tcgactataa aggttatcaa
     1321 gcttatcgca caggagactc tggcattatc aaagacggtt atctgttctt ccaaggacgt
     1381 cttgacttcc aaattaaact gcatggttat cgcatcgaat tagaagatat cgaaaacaac
     1441 ctaaaaaaag taagttacat tcaaaactgc gctattattc ctaaaatgaa agatgaaaag
     1501 gtagatatgt tggtcgcaca ggtcatccct actaaccatg atttcgaaaa agaataccag
     1561 ctaagtgctg caataaaaaa tgaactgaaa gaatttatgc cagcatacat gatcccaaga
     1621 aaatggattt acaaaacgga attcccgtta actatgaatg gcaaaatcga tcgcaaggcg
     1681 cttaatagcg aggttaacaa gtgagtttac catacggcac aatcctttat tttggagtac
     1741 ttgtactatt tttgattcct atcatagtag ctggtttgtt aggaaaaaga ttaccgattt
     1801 ataatgcttt tgtgacactc gtatttttat actttatgtt ctcagcaagt ccagtccaag
     1861 gagctacttt tatcttcttt gtcttctggc aacttgctct tgtacgactt tacttccatt
     1921 acaggcagga gaaaaagcag aaccacggcg gcgtattcgt catagcagtg attctgtcta
     1981 ttctccccct tattatctct aaagttgttc caattttagg agacaatgtt acaatggttg
     2041 gtttcctagg gatttcctac ttaacattta aagcggcaca aatgattatt gaaatacgcg
     2101 ataacttaat taaacagtat aacgcgtggg attttgttaa tttcttacta ttcttcccga
     2161 ctatatcatc cggaccgatt gaccgattcc gtcgctttaa aaaagacgtg gataatccgc
     2221 ctagtaaaga agcttatcta gctttattaa atcgaggaat attccttatc ttccttggtt
     2281 ttctctacaa attcattatc gcttacttag taaacaaaca ttttgttgtt ccactagaca
     2341 tcgcgattac acaccatgta gacacaacaa agagtttaat tggttatatg tatgcctata
     2401 gtatgtattt attctttgac tttgcaggtt acagtgcctt tgcagttggg gttagttact
     2461 tactcggcgt tcaaacacct atgaacttta acaaaccttt cgcagctcgc aatattaaag
     2521 agttctggaa tcgttggcat atgacgcttt ctttctggtt ccgcgattat gtattcatgc
     2581 gtttcgtatt ttgggttaca aaaaagaaat ggtttaaaag taagttcact attgcctacc
     2641 tagcatattt cgttaacttt ttcatcatgg gtgtatggca tggacttcat tggtattaca
     2701 tcgtttatgg cctttatcaa gcaacactaa ttgttggatt tgacctattc gaacgcttta
     2761 acaagaagta caaattctat ccaaaaaaca aaattactta tgtaatcggc gttttcatta
     2821 cattccaatt tgtttgt
//
LOCUS       DABQVC010000253         2793 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.254,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000253 DABQVC010000000
VERSION     DABQVC010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.254"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            125..1279
                     /locus_tag="IBJ56_002712"
     CDS             125..1279
                     /locus_tag="IBJ56_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HAM3418949.1"
                     /translation="MDKLNLKDIFSDPIFDELIAETPKKQVKRIDPELEKFQEIIEWI
                     KNHDGKEPEKSRDMTERKIFSRLKGYRDKPEMIKKFAEIDELNLLDSKNTVLENSIKS
                     PKSLDDILNDDTLFEKKDKVDSLLDLSRYKRTISAADKYSVRKHASHFERYEPLFRLV
                     QKEIANGTRKIIPVDTENNIKPGKFYIDNGILLYILSVGNYYEDKHGHRNAKLHLIYE
                     NGTENKGILLRSFASNLFDRTRHGRMVTEVMSDVMGDTTVEERVAEYLTTGYIYVVRS
                     LSSNPEILQYKSLYKIGFAAGSVEKRIANAKNEATYLYAPVKIVATWEVQNFSGRKLE
                     TVIHHRFEAKQIQISIPTANGKIENPKEWYLVSLDEIEASINDIIVKLNS"
     gene            1670..1954
                     /locus_tag="IBJ56_002713"
     CDS             1670..1954
                     /locus_tag="IBJ56_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 family protein"
                     /protein_id="HAM3418950.1"
                     /translation="MTKIRINKEKMINHATTLGDSAGKLDYYPLKNENMSYTQTNSIH
                     LFRESLLELFEGIENLGSVAQDDATRIKQMGEAFAKQDKSISQKMNLEVR"
     gene            1955..2284
                     /locus_tag="IBJ56_002714"
     CDS             1955..2284
                     /locus_tag="IBJ56_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418951.1"
                     /translation="MDKRTQELGEIKKEMEREDDALYAIKNKIRHLEDVEEDIHQARR
                     EIDDILYHMKEVWRGEHAEDTFWQIEDEVNHYNRKTACMTNDIHTELNNEQKKHRQNL
                     HALETKQ"
     gene            2463..>2793
                     /locus_tag="IBJ56_002715"
     CDS             2463..>2793
                     /locus_tag="IBJ56_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418952.1"
                     /translation="MKLDDNAKEIILKKSEFLLQNNFKLIEITDATITFSNKKIAFVI
                     GYERYDNVSNINIKFLEENEMFNLGWIAFVRRNQIPLPQNKLDNILELLDYAEKNYAK
                     VINLQFCQ"
BASE COUNT         1077 a          406 c          507 g          803 t
ORIGIN      
        1 cctcaaattg ttcaatttaa aaatgaaaat ggtagaattc cagataagtc tagttcagat
       61 caatacgagc aaagattagc ctatgcttta ttacgtttgg agcaactaag aagagagaga
      121 caagatggac aagcttaatc ttaaggatat tttttctgac ccaatctttg atgaattaat
      181 agctgaaact cctaagaaac aagttaagcg aattgaccca gaacttgaaa aatttcaaga
      241 gattatcgaa tggataaaaa atcatgatgg aaaagaacca gaaaaatctc gtgatatgac
      301 cgaaagaaaa atattttcca gacttaaagg ctatcgtgac aagccagaaa tgataaagaa
      361 gttcgctgag attgatgaac ttaacttgct tgatagtaaa aatacggttt tagaaaattc
      421 gataaaaagt ccaaaatctc ttgatgatat tcttaatgat gatacacttt ttgagaaaaa
      481 agataaagtt gattcactgc ttgacttgtc aagatataag agaacaatta gcgcagctga
      541 taaatatagc gttcggaaac atgctagcca tttcgaacga tatgaacctc tatttaggct
      601 tgttcaaaaa gaaatcgcaa atggcactag aaaaataatt cctgttgata ctgaaaacaa
      661 cattaaacca ggtaagtttt atattgataa tgggattctg ctttacatcc tatccgtagg
      721 taattattat gaagataaac atggtcatcg taacgcaaag cttcatctta tttatgaaaa
      781 tggaactgaa aacaaaggga ttttactgag atcatttgca tcaaatctct ttgacagaac
      841 tcgtcatggt cgaatggtaa ccgaagtaat gagtgatgtt atgggagaca caaccgttga
      901 agaaagagtt gctgaatatc tgactactgg atatatttat gtagtcagat ctcttagctc
      961 aaatcctgaa atattacaat ataaaagtct ttataaaatt ggttttgctg ctggaagtgt
     1021 tgaaaaacga attgctaatg ctaaaaatga agcgacttac ctatatgcac ctgtgaaaat
     1081 tgttgcaaca tgggaagttc aaaactttag tggtcggaaa cttgaaacag tcattcatca
     1141 tagatttgaa gctaagcaaa tacaaatctc tatcccaaca gcaaatggaa aaattgaaaa
     1201 tcctaaagaa tggtatttag tttctttgga tgaaattgaa gcaagtataa atgatatcat
     1261 tgtgaaattg aatagttaat tcaaatttat gatagttgtt aaagcatcct tgccataatg
     1321 gtgatgatgc ttttttggcc aaagctacgc tggcatcttg ttgactattt ttaccaaata
     1381 cataacaatt taattcatcg ggtggttgtg gagtatgata taacattgtg gattgtaata
     1441 gatttagcaa gtctactgct aatttgtaat aagattctta tgtctatccg tcagagaaaa
     1501 gttgacttta actaaatgat attgattttt gcatttcaga tcataaagaa tattctttga
     1561 catcaattat ttacaatgcc attttcaatg ctactaaatg acaatccaaa aaaatgtcat
     1621 tataatagaa ccatgataca accttcacat acagaaaggg aaaacaacca tgacaaaaat
     1681 tcgtattaat aaagaaaaaa tgattaatca tgccacaacc ctaggtgata gtgcggggaa
     1741 attagattac tatcctttga aaaatgaaaa catgagttat acgcaaacaa attctatcca
     1801 cctttttcgg gaatcattac ttgaactgtt tgaaggcatc gaaaatttag gatctgttgc
     1861 acaagatgat gctactcgaa tcaagcaaat gggggaagct tttgcaaaac aagataaatc
     1921 catcagccag aagatgaatt tggaggtgcg ttaagtggat aaacgtaccc aagaattagg
     1981 tgaaataaaa aaagaaatgg agcgagaaga tgacgctcta tacgcgatta aaaataaaat
     2041 tagacattta gaggacgtgg aagaagatat tcatcaagct agacgtgaaa tcgatgacat
     2101 cctttaccat atgaaagaag tttggcgagg agaacacgca gaggatactt tttggcaaat
     2161 agaagacgag gtaaatcatt acaaccggaa aactgcttgc atgactaacg atattcatac
     2221 cgaactaaat aatgagcaaa aaaagcatcg acaaaatctc cacgcgctcg aaactaaaca
     2281 ataggatatt aaaaaggaga tgacgtagct acggctacga agccgactgt agaaaactta
     2341 tacatcgctg ggactaaaca acttacgggt tttgggcgtg aatatgaata ctttctacaa
     2401 catggttata cttatgatgt aaaaacaagt acaatgaagt tgaagaaatg aggaattcaa
     2461 gcatgaaatt agacgataat gcaaaagaaa taatccttaa aaaaagtgaa tttctactcc
     2521 aaaacaattt taaattaata gaaataacgg atgctactat cacattttca aacaagaaaa
     2581 ttgcttttgt catcggttat gaaagatatg ataatgtaag taatattaat ataaagtttt
     2641 tggaagaaaa tgaaatgttt aatcttggat ggattgcttt tgtaagaaga aatcagatac
     2701 cgctccctca gaataaatta gataatatat tagagttact tgattatgct gaaaaaaatt
     2761 atgctaaagt tattaactta caattttgcc aag
//
LOCUS       DABQVC010000254         2762 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.255,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000254 DABQVC010000000
VERSION     DABQVC010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.255"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..379)
                     /locus_tag="IBJ56_002716"
     CDS             complement(<1..379)
                     /locus_tag="IBJ56_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1149 family protein"
                     /protein_id="HAM3418953.1"
                     /translation="MDIVTNKIVVEKYNFETIMEENEQFENKIELEVHEVEPVNGNVE
                     LMSKGKIFKITIPFLLVLENFRIDGRISRIIQLKDFFGDFSDLEAVDVEGLSNPLIDY
                     IKRLTYDVTEIAFDEPGVSLDFNA"
     gene            complement(448..828)
                     /locus_tag="IBJ56_002717"
     CDS             complement(448..828)
                     /locus_tag="IBJ56_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HAM3418954.1"
                     /translation="MKIEHVALWTTNLEQMKQFYVTYFGATANDLYENKTKGFNSYFL
                     SFEDGARLEIMSRTDVTGKTTGENLGWAHIAISTGTKEAVDELTEKLRQDGFAIAGEP
                     RMTGDGYYESVVLDPEGNRIEITW"
     gene            complement(844..1851)
                     /locus_tag="IBJ56_002718"
     CDS             complement(844..1851)
                     /locus_tag="IBJ56_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HAM3418955.1"
                     /translation="MDTVILITVIIVIMGLAFDFINGFHDIANAVATSISTRALKPRV
                     AIGIAAVMNFLGAISFTGVAESLTKSIVDPFSLNNGEFVVLCGLIAAVIWNLMTWLVG
                     MPSSSSHALIGAIAGASIASASSFSVLNWSGFTTIIIALIISPIIGFTVGYLIYSLFK
                     HLFHDKKLGKMNRRFRFIQIGTAAAQAYSHGTNDAQKTMGIITLALVASGLLKESAGI
                     PFWVQVSCAASMAIGSSVGGYRIIKTVGTKIMKITPVTGVASDLSSLSVIMTATLIHL
                     PVSTTQVIDSSIMGVGTANHKKEVNWRTGKNMVVTWFITLPLAGLLAAVVYWISAAIF
                     L"
     gene            complement(1960..2358)
                     /locus_tag="IBJ56_002719"
     CDS             complement(1960..2358)
                     /locus_tag="IBJ56_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418956.1"
                     /translation="MGMITFLPIFFIFAIFLGLAAKVLLAIWIYKDAEQRGMNAILWC
                     LLMVFINVIIILVIYLIVRNKGEVMKQNLGLLISGIGIAVLNTLMAIMAFIFIIFFAV
                     NDGGMHNMMDGYNYDYDDGYEYDMDNFEDF"
     gene            complement(2349..>2762)
                     /locus_tag="IBJ56_002720"
     CDS             complement(2349..>2762)
                     /locus_tag="IBJ56_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HAM3418957.1"
                     /translation="NRQTEFTLLIVGASLSILTFLGAMLYTIIFGLNTLMVADTFGYY
                     SSSEETIVLGIITFFSVVAAFFALGSAVFGFIGAFKVKSDGPKVKTLGVCFIVLGGLQ
                     VFTIHGILFLIAGILTITKKEYKTNSKEDEGTKWE"
BASE COUNT          889 a          588 c          420 g          865 t
ORIGIN      
        1 tagcgttaaa atccaagcta actcccggtt catcaaatgc gatttctgtt acatcatatg
       61 ttaagcgttt gatgtagtca attagtggat tggataagcc ttcaacatct acagcttcta
      121 aatcggaaaa atctccaaaa aagtctttta attgaataat acggctgatt ctaccgtcaa
      181 tccggaaatt ttcaaggact aataaaaaag gaattgtgat tttaaaaatt tttccttttg
      241 acataagttc cacatttcca ttgactggct cgacttcatg gacctctaat tcaattttgt
      301 tttcgaattg ctcattttct tccatgattg tttcaaaatt atacttttct acgacaattt
      361 tattagttac gatatccata aaattcacct catttgtagt atgtaccccg tatattacac
      421 gataactaag ttcctagcaa atcaatacta ccacgtaatt tcgatgcgat tgccttctgg
      481 gtctagcacg acactttcgt agtatccgtc tcctgtcatt cttggttcac ccgcaattgc
      541 aaaaccatct tgtcttagtt tttcagttag ctcatctact gcttcttttg ttcctgttga
      601 aatagcgatg tgcgcccagc ctaagttttc cccagttgtt tttcctgtta catccgtccg
      661 actcataatt tcaagtcttg ctccgtcttc aaacgaaaga aagtaagaat tgaagccttt
      721 tgttttgttt tcatataaat cattggccgt tgcaccaaaa taagtgacgt aaaattgctt
      781 catttgttct aaattagttg tccataatgc aacatgttct attttcattt aaaatcctcc
      841 ttattataaa aaaatagctg ctgatatcca gtataccact gctgccaaaa gtccagctag
      901 tggtaacgtg ataaaccaag ttacaaccat attttttccc gtacgccaat tgacttcttt
      961 tttatggtta gctgttccga cacccataat cgagctgtca ataacttgcg tagtgctgac
     1021 tggcaaatga atcaaagtag ctgtcatgat tacagaaagt gagcttaaat cggacgcaac
     1081 acctgtaact ggggtgattt tcatgatttt agttcctact gttttgatga ttcgataacc
     1141 accaacagac gatccaatcg ccatcgatgc cgcacaactt acttgcaccc aaaaaggaat
     1201 accagctgac tctttcaaaa gcccactcgc aactaaagca agcgtgataa ttcccatcgt
     1261 tttttgggca tcatttgtgc cgtgtgaata tgcttgggcg gcagctgttc caatttggat
     1321 aaaacgaaag cgtcgattca tcttcccaag ctttttgtcg tgaaaaagat gcttaaagag
     1381 tgaataaatc aaataaccta ctgtaaaacc gataatcggc gagataatga gtgcaataat
     1441 aatagttgta aatcctgacc aattaagcac gctaaaacta ctggctgatg cgatggaggc
     1501 cccagctatc gcaccgataa gcgcatgcga ggaactacta ggcatgccaa caagccaagt
     1561 catcaaattc caaatcactg ccgcaattaa gccgcataaa acgacaaact ctccattatt
     1621 aagcgaaaat ggatctacaa tacttttggt gagcgattca gctactccgg taaacgaaat
     1681 ggctcccaga aaattcatga ctgccgcaat tccaattgcc actcgcggtt ttaaagctct
     1741 agttgaaata cttgtggcca cagcatttgc aatatcatga aatccattta taaaatcaaa
     1801 tgctaagccc attataacga taataaccgt aattaaaata accgtatcca ttcagcagtt
     1861 ccccttgtcg atattcactt ttttattgtc tatacccctt ttatagaaat ataaaaagaa
     1921 tctgctcctg tattaggtag cagattctcg ttggtgttat taaaaatctt caaaattatc
     1981 catatcgtac tcgtacccgt cgtcataatc atagttataa ccgtccatca tattatgcat
     2041 tccaccatca ttcaccgcaa aaaagattat aaaaataaaa gccataatcg ccattaatgt
     2101 atttagtacc gcaataccaa taccactaat tagtagtcct aaattttgct tcatgacttc
     2161 tcctttatta cgtacgatca ggtaaataac aagaataata atgacattaa tgaaaaccat
     2221 taacagacac caaagaattg cgttcattcc gcgttgttca gcatctttat aaatccaaat
     2281 tgctaaaagg acttttgctg ctagtcctaa aaaaatcgca aaaataaaaa atattggtaa
     2341 gaacgttatc attcccattt tgtcccctca tcttctttag aatttgtttt gtattctttt
     2401 tttgtaattg ttaaaattcc tgcaatcaaa aataaaattc cgtgaatagt aaatacttgc
     2461 aatccaccca aaacgataaa acaaacgcct aatgttttta cttttggccc gtcacttttg
     2521 actttaaatg caccgataaa tccaaaaact gctgatccga gtgcaaaaaa tgcagcaact
     2581 actgaaaaga aagtaattat cccaagtaca atcgtttctt ctgagctact ataataacca
     2641 aaagtatcag ctaccattag ggtattaagt ccaaaaataa tggtatacaa catagcacct
     2701 agaaaagtta aaatgcttaa tgaagccccc acaataagta atgtaaattc tgtttgtctg
     2761 tt
//
LOCUS       DABQVC010000255         2718 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.256,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000255 DABQVC010000000
VERSION     DABQVC010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.256"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..2650
                     /locus_tag="IBJ56_002721"
     CDS             <1..2650
                     /locus_tag="IBJ56_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HAM3418958.1"
                     /translation="PKTSTTRAGSSKGDFLIRNKVRYRKVENNPLRAIDEIEQEIVSQ
                     NKKPRYLITTDFEMLYAKDTKTNDSLAIHFEDLPTSAEFFLAWNGIEKVDYQKENPAD
                     IKAAERFTKLYDELVKINPELAKKETDGKSFNLFLIRSLFLYFSEDTEIITKGSFTNI
                     LKIRTETDGSNLNSVIKELFLILDVPEKQRYDMPDWLKEFPYVNGNLFKEPHHDLNFS
                     TFTRKLLIEAGELLNWNEINPDILGAMIQTVANKEERQVSGMHYTSVPNIMKVIKPLF
                     WDNIQAEYQRLSDRADDYKDRDITEKQRREQQRDIIKQLGRLLERMSKIKFLDPACGS
                     GNFLIITYIELRRLEIQILVKIREIQEALNEKDVYQGELLKRSKIRLNQFSGIELDDF
                     AHEVARLSLYIAEHQMNVEMMESLADYQPRIFPLQESGNIVHGNALHMDWNKVLTHEA
                     KDEVYIMGNPPYIGSKRQTEDQKQEIDTLFLNVHNHRQLDYISGWFIKGAKFIHQANA
                     KLAFVTTNSINQGQQVAVLWNEIFKYNVEINFAYTSFKWANSASNNAGVTVAIIGICP
                     IEASEIKYLFDETEVARTVKSINAYLVDGENILVSEKKSPISDIPIVDYGSMANDNGN
                     LIFNTIEYFEIIDKYPDLGAVIKKFIGGKDFIDGSYRYALWMTKKDFEKYADNQLIIK
                     RTTAVKEYRQNSKRNSTKELSKYPYRFGECRYEDKDYILIPRTSSESREYVPMGYFTD
                     RSVASDSAVAVYGAPIWLLGILQSRMHMTWLRSVGGKMKTDYRYSAGMVYNTFPISKL
                     STQRKNVLEEAVLEMLDVREEEGGTLAELYGGANKPMNARLREAHEKIDGIVERAYKQ
                     EPFKSDEERLNVLLKLYQEMVNEEKK"
BASE COUNT          968 a          457 c          521 g          772 t
ORIGIN      
        1 tcctaaaaca agtaccacac gtgcaggatc cagtaaaggt gattttttga ttcgaaataa
       61 agttcgttat cgaaaagttg aaaataatcc actacgcgct attgatgaaa tcgagcaaga
      121 aattgtatcg caaaataaaa aacctcgcta tctcatcaca actgattttg aaatgcttta
      181 tgctaaagat acaaaaacta atgattctct tgctattcac tttgaagatt taccaacttc
      241 tgcagagttt ttccttgcat ggaatggaat tgagaaagta gattaccaaa aagaaaaccc
      301 agcggatata aaagcggcgg agcgtttcac aaaactttat gatgaattgg tcaaaatcaa
      361 tccagagctt gcaaaaaaag aaactgacgg caaatccttc aacctatttc taattcgttc
      421 acttttcttg tacttctctg aagatacaga aattatcact aaaggttctt ttactaatat
      481 tcttaaaata agaactgaaa ccgatggaag taatctaaat tcagtcatca aagaattatt
      541 tttaatttta gatgtgcccg aaaaacaacg atacgatatg cctgattggt tgaaagaatt
      601 tccatacgtt aatggcaacc ttttcaaaga accacatcat gatttaaact ttagcacctt
      661 tacccggaaa ctactcatcg aagctggaga attgctcaat tggaatgaga tcaatcctga
      721 tattttgggg gcaatgattc aaactgttgc aaacaaagaa gaacgtcaag tctcaggcat
      781 gcactacacg agtgtgccaa atatcatgaa agtgattaaa ccactatttt gggataatat
      841 tcaagcagag taccaaaggc tatctgaccg tgcagatgat tacaaagacc gtgatattac
      901 cgaaaaacaa agacgagaac aacaacgaga tattatcaaa caactgggtc gcttgcttga
      961 gcgaatgagt aaaattaagt tcttagaccc tgcctgtggt tctggcaact ttttgattat
     1021 tacctacata gagcttcgaa gacttgaaat ccaaatcctt gttaaaatcc gtgaaattca
     1081 ggaagcttta aatgaaaagg atgtttatca aggagaatta ctcaaacgat ctaagataag
     1141 gctcaaccaa ttctcaggta ttgagcttga tgattttgcg catgaggtag ctagactttc
     1201 tctttatatt gctgaacatc aaatgaatgt agaaatgatg gaatctttag ctgactatca
     1261 acctagaatc tttcctcttc aagaatcagg aaatattgta cacggtaacg ccttgcacat
     1321 ggattggaat aaagttctca cacacgaggc aaaagatgaa gtctatatta tgggaaatcc
     1381 accatatatt ggtagcaaac gacaaactga agatcaaaag caggaaatag atactttgtt
     1441 tttaaatgtt cataatcatc gacagttaga ttatatttct ggttggttta tcaaaggagc
     1501 taaatttatt caccaagcca atgcaaaact tgcattcgtc actactaact ctatcaacca
     1561 aggacagcag gttgccgtac tttggaatga aatatttaaa tacaatgttg aaataaattt
     1621 tgcttacact tcatttaaat gggctaacag tgcaagcaat aatgcaggtg ttacagttgc
     1681 aattattgga atttgcccaa ttgaggcaag tgagattaaa tatttatttg atgaaactga
     1741 ggttgcaaga accgtaaaga gtataaatgc ttacttggta gacggagaaa atattctagt
     1801 ttcagaaaaa aaaagcccta tatctgatat accaatagtt gattatggaa gtatggctaa
     1861 tgataatgga aatttgatct ttaatactat tgagtatttt gaaattattg ataaatatcc
     1921 tgatttggga gcagttataa aaaaattcat tggcggaaaa gattttatag atggtagtta
     1981 taggtatgct ttatggatga ccaaaaaaga ttttgagaag tacgcagata accaattaat
     2041 aataaaaaga acaactgctg taaaggaata tcggcaaaat agtaaaagga attccactaa
     2101 agaactatca aaatatcctt atcgctttgg ggaatgcaga tatgaagata aagattatat
     2161 actaatcccg aggacatcat cagagtctcg tgaatatgtg ccaatgggat atttcacaga
     2221 tcgatcagtg gcctcagact ctgcggtggc agtctacggt gccccgatct ggctcctcgg
     2281 tatcctacaa tctcgcatgc atatgacttg gcttcgctca gttggtggga aaatgaaaac
     2341 ggattatcgc tattcagcag gcatggttta caatactttc ccaatttcca agctttcaac
     2401 ccaacgtaaa aatgtccttg aagaagccgt tttagagatg ctggatgtcc gtgaggaaga
     2461 aggtggtaca cttgctgagc tatatggtgg cgcgaataaa cctatgaacg caagattacg
     2521 cgaagcacac gaaaagattg acggcattgt ggaacgtgct tataagcaag aacctttcaa
     2581 atccgatgag gaacgattga atgtactgtt gaagctttat caagaaatgg taaatgagga
     2641 gaaaaaatga catcaaatat ttttgaaatt aattataatg gtactggaca aagccaaaat
     2701 acaaatgcgt taggaatg
//
LOCUS       DABQVC010000256         2700 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.257,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000256 DABQVC010000000
VERSION     DABQVC010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.257"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            288..1241
                     /locus_tag="IBJ56_002722"
     CDS             288..1241
                     /locus_tag="IBJ56_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HAM3418959.1"
                     /translation="MPSKKKKIVVIGRSNLQNLYIHTVLLKKIPAEIYLIDDQAKTSV
                     QDFDYASYYHADATIHAGTFNECHNADIVVFFQEEMSNQLVSKEDNVTLIKEKVKKMM
                     ASGFRGIVLVATAESNVVAALIKRFSGLPANQIITLGTMLATSYFQVEIAKLFKISPK
                     NVHGYIIGDNAEDVIPVWSRAFLGGKPILSYLAEEQKRISAEDLQNLTKMITKIPDFP
                     FENKDGCSFRFSTVTVLAELTEVVLRDEARVITVGVEVKDAYGLENPVFISVPAVIGA
                     EGVRELLELHLSDDEQKELKQIATKTTEKLEELQLNKGGIS"
     gene            1241..1513
                     /locus_tag="IBJ56_002723"
     CDS             1241..1513
                     /locus_tag="IBJ56_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418960.1"
                     /translation="MEYSYPLNPDWTTEEMTIVVQFLEAIERAYEKGIDTLELKEKYR
                     AFKQVVPAKGEEKRIGIDFEKASGYSAYKVMQLVKNATTSKIKMQP"
     gene            1535..2065
                     /locus_tag="IBJ56_002724"
     CDS             1535..2065
                     /locus_tag="IBJ56_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HAM3418961.1"
                     /translation="MDISQIKAEVVTPETGIHVGDQTAPVKVMSFVNLRCPFCREWNE
                     KSKDVLTEYIQAGKIELIIKPFDKEKESLQRGNVTHRYLDYSKPEETRETINKIYSKQ
                     DEWGSLTLPEVATYMESELGLTEQDNKAASEKIVAEANAANVVFVPTVIVGEHIFDEH
                     ISPEELRSLLDGELAK"
     gene            complement(2123..>2700)
                     /locus_tag="IBJ56_002725"
     CDS             complement(2123..>2700)
                     /locus_tag="IBJ56_002725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HAM3418962.1"
                     /translation="GFYTHMKTRFALQILYMISTTFLRHLKRLNRQTDEIEKELHESM
                     KNKQLYDLMGIEKSLVYFVTALKSNKVVLDKMMRQNIVKMYEEDQDLLEDVIIENRQG
                     IEMAEVHSNILSGMMDAYASIISNNMNIVMKFLTSFTIILTIPTMVFSFYGMNVKLPF
                     MNTPMAWMLTLGFAFGIAGALAIVFWRRKFF"
BASE COUNT          948 a          458 c          517 g          777 t
ORIGIN      
        1 ctcgaaactc caatcacagg ctttgtcaaa atgactggtg gctacatcgg taaaggaatc
       61 ttagaagtaa ttattctgat tatcgttagt tatgtattac cgattttctt ctgttttgca
      121 acgcattatt taaaagtaaa acgacgtgaa atggcttaaa ataagattat tttgtaaaaa
      181 gcaaagcgaa tgagcattgc tttttattta tgtggtcaag ttattttatt tttgcctcgg
      241 aagcatgcta aaataacaat aagagacttg atgaggagga gatgcatatg ccatctaaga
      301 agaaaaaaat tgtcgttatc ggcagaagta atctacaaaa tctctacatt catacagttc
      361 ttttaaaaaa aataccagcc gagatttact taatagacga tcaagctaaa acaagcgtac
      421 aagattttga ctatgcgagt tattatcatg cagatgcgac cattcacgca ggaaccttca
      481 acgagtgtca caacgctgat atagtcgtct tttttcaaga agaaatgtcc aatcaactcg
      541 tttcaaaaga agacaacgtc acgctaatca aagaaaaagt gaagaaaatg atggcgagcg
      601 gtttccgagg aattgtctta gtggcgacag ctgaaagtaa tgtcgttgcc gcgttaatta
      661 aacgtttctc cggcctacct gcaaatcaaa ttattacgct tggcaccatg cttgcgacgt
      721 cttattttca agtggaaatt gctaaattat ttaaaattag ccctaaaaat gtacacggat
      781 atattattgg cgataatgca gaagatgtca ttcctgtatg gagtagagcc tttcttggtg
      841 gcaaaccaat tttaagttat ttagctgaag agcaaaaaag aatctcagca gaggatttac
      901 aaaatttaac aaaaatgatt actaaaattc cagattttcc ttttgaaaat aaagatggtt
      961 gttcttttcg atttagcacg gtaactgttc ttgctgaatt aaccgaagtt gttttgcgcg
     1021 acgaagcaag agttataaca gttggtgttg aagtgaaaga cgcatatggt ttagaaaatc
     1081 ctgtcttcat tagtgttcca gctgtcattg gcgcagaagg agtcagagaa ctacttgaat
     1141 tacatctctc agacgatgaa caaaaagaat taaaacaaat cgccacaaaa accaccgaga
     1201 aattggaaga attgcaactt aacaaaggag ggattagtta atggaataca gttatccact
     1261 aaatccagac tggacaaccg aagaaatgac gattgttgtg caatttttag aagctattga
     1321 gcgagcgtat gaaaagggca tagatacgct tgagctcaaa gaaaaatatc gagcattcaa
     1381 acaagtagtc cctgccaaag gagaagaaaa acggattggt atcgactttg aaaaagcaag
     1441 tggctattcg gcctataaag tcatgcaact tgtaaaaaac gcaactacta gtaaaataaa
     1501 aatgcaacca taattaagag gaggaatttt tttcatggat attagccaaa ttaaagcaga
     1561 agtagtaaca ccagaaacag ggatacacgt aggagatcaa actgcgccag taaaggtaat
     1621 gtcattcgtt aacttacgtt gcccattttg tagagaatgg aatgaaaaat ccaaagacgt
     1681 tctaacggaa tatattcaag cagggaaaat tgaattaatc attaaaccat ttgataaaga
     1741 aaaagaatcg ttacaacgag gaaatgtaac gcatcgctac ttagattatt ccaaaccaga
     1801 agaaacccgt gaaacaatca ataaaattta tagtaagcaa gatgaatggg gtagcctaac
     1861 gcttcctgaa gtagctactt atatggaatc cgagttaggc ttaacagagc aagacaacaa
     1921 agcggcatca gaaaaaattg ttgctgaggc aaacgcggca aatgttgttt ttgtaccaac
     1981 tgttattgtg ggtgaacata tttttgatga gcacattagt cctgaagaat tacgttcgtt
     2041 actagacggc gaattagcta aataaaaaaa gcgaatgtat tggcctaaaa ttttaggtaa
     2101 tacattcgct ttttgtttat ttttaaaaga atttcctccg ccagaataca atcgcaagcg
     2161 ctccggcaat cccgaatgca aaaccaagcg tcagcatcca agccattggt gtattcataa
     2221 acggtaattt cacgttcatt ccgtaaaaac taaacaccat cgttggaatc gtcaagatga
     2281 tggtaaaaga agtaaggaat ttcatcacga tattcatatt gttcgagata attgaagcat
     2341 aggcatccat catcccgctc aaaatattcg agtggacttc cgccatttca ataccttggc
     2401 gattttcaat aataacatct tctaataagt cttgatcttc ttcgtacatt ttaacaatat
     2461 tttgacgcat cattttatca agtacgactt tattcgattt aagggcggtt acaaagtaga
     2521 ctaaactttt ttcaatcccc attaaatcat aaagttgttt atttttcata gattcatgta
     2581 gttctttttc gatttcgtct gtttgacggt tcaagcgttt taagtgacgc aagaaagtag
     2641 tggaaatcat gtataagatt tgcaatgcaa accgcgtttt catatgtgta taaaagcctt
//
LOCUS       DABQVC010000257         2679 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.258,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000257 DABQVC010000000
VERSION     DABQVC010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.258"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            108..929
                     /locus_tag="IBJ56_002726"
     CDS             108..929
                     /locus_tag="IBJ56_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HAM3418963.1"
                     /translation="MKKSKTVQILLVFSVVALILSMVGVVSIWYGQKNHQTNNAKTTT
                     KKETTVTKKQDTFKITALGDSLTYGVGDTEGGGYVRVVENFYKQKEKNVENVNLAISG
                     AKSDQLLKQLDQKEVQNQIKSADVILMTIGGNDLFRGGEALDDFKSNAIKQAEASYTN
                     NLKQIYQTIRKLNPSAPVFHIGLYNPFMSLKNASEMSAVANEWNMQSQNLSQNEKNII
                     YVPTFDLFQQNGDAYLATDKFHPNHAGYQFIGNRVTKVIQTGGGKDDDGASTSSN"
     gene            901..1806
                     /locus_tag="IBJ56_002727"
     CDS             901..1806
                     /locus_tag="IBJ56_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3418964.1"
                     /translation="MTELALQVTNLHKKIRKREIIKGISFEVMPGEVFGFLGPNGAGK
                     TTTIRMIVGLIKPTSGTILIGGKDIRKNFTEAMRGLGSIVENPEFYTFLTGQENLAYF
                     ARMDSAIKKERIQEVTELVGLEKRINDRVSTYSLGMRQRLGIAQALLSNPKLLILDEP
                     TNGLDPSGIHEMRDFIRALAKNEGISVLVSSHLLSEIELLCDRVAIMTDGTIIKTDQV
                     SHLLSSRAQLRWLATPFEQAKAFLESVTEVEVDGEYLVTAVNEHSAEWNEQLVAKGIQ
                     VHEIDKKKPSLEDLFLELTGGHTID"
     gene            1799..>2679
                     /locus_tag="IBJ56_002728"
     CDS             1799..>2679
                     /locus_tag="IBJ56_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418965.1"
                     /translation="MINLVYNEQLKLWRKKRLIVILALVAIIVAIFTYAQFRQHQEDE
                     KQAGTSDWHVQTQQQIVDLENRLGTGRLPEEYQKYFKVLVGQLQYYLDNDINPNAPGA
                     PTFLKTFVENGISLLFPLFIMVIAADLISAETSAGTMKFLLTRPVKRWRILTSKYISM
                     LLSISAIMVLSAVIAYLISGIVFGYGGWDAPVLTGFGMKDGAVTTTDVYQLPVWQLLL
                     MEFGLAWFVSVVVGVLTMFVSVLVRSTAAVMGIMLASLITGTILTNLVSSWPSAKYLF
                     MVNLQLTNYLNGSSPPV"
BASE COUNT          848 a          495 c          600 g          736 t
ORIGIN      
        1 aggatagcta gtttttacta gctatccttt ttaaatgaag gagtctcatt ttaaaatatg
       61 ctatacttag tgaaatataa acctcatgaa acggtaggtg gttgtcagtg aaaaagagta
      121 agacggttca aattctatta gttttttccg ttgttgcgtt aattttgagc atggttgggg
      181 tggtatcaat ttggtatggg cagaaaaatc atcaaacgaa taatgcgaaa accaccacca
      241 aaaaagagac gacagtaacg aaaaaacaag atacctttaa aataaccgcg ctcggtgatt
      301 cgcttacata tggcgttggc gatacagaag gcggcgggta tgtccgagtg gtggagaatt
      361 tctacaaaca aaaagagaaa aatgtcgaga atgtcaatct tgctattagt ggggcgaaat
      421 cagaccagct tctcaaacaa ttagatcaaa aagaagtgca aaaccaaata aaatcagccg
      481 atgttatttt aatgacgatt ggcggaaatg atttgtttcg tggcggagaa gcactggatg
      541 atttcaaaag caatgcaatt aaacaagccg aagcaagcta tacgaacaac ctgaaacaaa
      601 tttaccaaac gatacgaaaa ttaaatccat ccgcgcccgt ttttcatatt gggctgtata
      661 atccgtttat gtcattaaaa aatgcgagtg aaatgtcggc agttgcgaat gagtggaaca
      721 tgcaaagtca aaatctatcg caaaacgaga aaaatatcat ttatgttccg acttttgatt
      781 tatttcagca aaatggggat gcatatttag cgactgataa attccatcca aatcacgccg
      841 gatatcagtt tatcggtaat cgggtgacaa aggttataca aacaggaggg ggaaaagacg
      901 atgacggagc tagcacttca agtaactaat ctgcataaaa aaattcgcaa acgagaaatt
      961 atcaaaggga tttcttttga agtaatgccc ggagaagttt ttggctttct tggaccgaat
     1021 ggagctggca aaacaacgac gattcgaatg attgtggggc taatcaaacc aacatctgga
     1081 acgattttaa tcggtgggaa agatatacgg aaaaatttca ccgaagcaat gcgcggactt
     1141 ggctcgatcg ttgaaaaccc agaattctat acatttttaa cgggacaaga aaatttagcg
     1201 tattttgccc gaatggattc ggcgattaaa aaagaacgca tccaagaagt aaccgagcta
     1261 gttgggctag aaaagcggat aaatgaccga gtttctacgt attcacttgg tatgcgccag
     1321 cgtttaggca ttgctcaagc gttactttcg aatccgaaat tattaattct tgatgaacca
     1381 acaaacggtt tagatccatc tggaattcac gaaatgcgcg actttatccg tgctctggct
     1441 aaaaatgaag gtattagtgt acttgtttct tcccatttat taagtgaaat tgaactttta
     1501 tgtgaccgag tggcgattat gacagatgga acgattatta aaaccgatca agtttcacat
     1561 cttcttagtt ctcgtgcaca attacgctgg ctggcgactc cttttgaaca agccaaagca
     1621 tttttggaaa gtgtaaccga agtagaagtg gacggcgaat atctcgtgac cgcagtgaat
     1681 gaacatagcg ccgaatggaa cgaacagtta gttgcaaaag gcattcaagt ccatgaaatc
     1741 gacaagaaaa aaccatctct cgaagaccta tttcttgagt taacaggagg tcatacgatt
     1801 gattaattta gtttataatg agcaattaaa actttggcgc aaaaagcgac tcattgttat
     1861 tttggcgcta gtggcaatta tcgtagcgat tttcacgtat gcacagttcc ggcagcatca
     1921 agaagatgaa aagcaagctg ggacaagcga ttggcatgtg caaacccaac aacaaattgt
     1981 tgaccttgaa aataggctcg gaacagggcg actgccagaa gaatatcaaa aatatttcaa
     2041 agtgcttgtc gggcaactac aatattattt ggataatgac atcaacccaa atgcacctgg
     2101 agcaccaact ttcctaaaaa cgtttgtcga aaatggtatt agtttattgt ttccgctttt
     2161 tatcatggtt atagcggccg acttaattag tgctgaaaca agtgcgggaa cgatgaaatt
     2221 cctgctgaca aggcctgtga agcgatggcg gattttgacg agtaaatata tttcaatgtt
     2281 gctttcgatt tccgcgatta tggtattatc cgctgttatt gcctatctga tttctggaat
     2341 tgtgtttggt tacggtggct gggatgcgcc agttctcacc ggatttggca tgaaagatgg
     2401 tgctgttaca acaacagacg tgtaccaact gccggtttgg caactactgc tcatggagtt
     2461 cggactcgcg tggtttgtca gtgtcgtggt cggcgtgtta acgatgtttg tatcggtgct
     2521 cgtccgctcc acagctgccg taatgggaat tatgcttgct tcactcatta ccggaaccat
     2581 tttaaccaac ctcgtcagct cttggccgag cgcgaaatat ttatttatgg ttaatttaca
     2641 actaacgaat tacttaaacg gctcgagccc acccgtcga
//
LOCUS       DABQVC010000258         2670 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.259,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000258 DABQVC010000000
VERSION     DABQVC010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2670
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.259"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..637)
                     /locus_tag="IBJ56_002729"
     CDS             complement(<1..637)
                     /locus_tag="IBJ56_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HAM3418966.1"
                     /translation="MKFNWKVVLLFVLILALIVPVYSKAVETGKELPKSPELQDDKSS
                     TLKNVNTPKNLKASPLTIPANSTIADLFPDEGMAKTVANQLGRTENNNFQTPTKTDWK
                     VDDVVTEVELNRMWYLTSVATIGSIEGIQYLPNLYNVQLQFDDQCKDLSPFLKAPNGY
                     PQLYRLNINNGNISDISPLTELSAPTLKYIDLAGNNISDLSLFKKLPNKLPS"
     gene            complement(655..1320)
                     /locus_tag="IBJ56_002730"
     CDS             complement(655..1320)
                     /locus_tag="IBJ56_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3418967.1"
                     /translation="MEKLFTYKEFVDMMQKYGIRHTKRKLRRGENLMENASKFSNVVL
                     LIDGYISSYTYESPEKLLSIFEPGIFLRYSILEDQPEFVTNIALSDNCEVYEYKKEDI
                     EYALTLFPENFGFQYFFLKRIGRHLYYRALLNGKEHKDKLYYAMKYLGELIGKTDENG
                     NVSLPPEVTLKVLIEYSTLSKAAFYRQRIHLLEQEILKPHENTFIVQKKVASHYEDQL
                     TSI"
     gene            1688..2635
                     /locus_tag="IBJ56_002731"
     CDS             1688..2635
                     /locus_tag="IBJ56_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HAM3418968.1"
                     /translation="MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRA
                     KDLGIVEIFIKDETYYTVDLEQKLEEKFGLEEAIVVATHDMSEEEALNFLAKEAAYTL
                     SKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDL
                     KKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTM
                     EEIGYINSEDIEELRYKDVVGDINSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVV
                     ALANGLQKKEALVAALNAGLIDVIVITDRMAEYILQKND"
BASE COUNT          898 a          456 c          450 g          866 t
ORIGIN      
        1 aactaggtaa tttattagga agctttttaa aaagagataa atcagaaata ttattacccg
       61 ctaagtctat atatttaagt gttggtgcgc tcagttcagt aagaggtgaa atatctgaaa
      121 tattaccatt attaatattt aaccgatata actgtggata tccatttggt gcctttaaaa
      181 aaggagacaa atccttacat tggtcatcaa actgtaactg tacattgtaa agattgggta
      241 gatattgaat gccttcgata cttcctatag tagcaactga agttaagtac cacattctat
      301 ttaactctac ctcagtaaca acatcatcca ctttccaatc cgttttagta ggtgtttgaa
      361 aattgttatt ttctgttcgt cctagctggt ttgcgacagt ttttgccatc ccttcatcgg
      421 gaaacaaatc tgctatcgtg ctattcgctg gaattgttag cgggctagct ttcagatttt
      481 taggtgtatt tacatttttt aacgtagatg acttatcatc ttgtagttcc ggactcttag
      541 gtaactcttt tcctgtttct acagccttcg aataaaccgg aacaataagt gctaaaatta
      601 aaacaaacag cagaactact ttccaattaa atttcattat ttttatgtct ccttttaaat
      661 gctagttagc tggtcttcat aatgactagc tacttttttt tgaacaataa aagtattttc
      721 atgcggtttt aaaatttctt gctccaataa gtgaattcgt tgtctataaa aagctgcttt
      781 ggataaagta ctgtattcaa ttaagacttt caatgtcact tctggtggca acgaaacatt
      841 tccgttttca tccgttttac caatgagttc tcccaaatat ttcatggcat aatatagttt
      901 atctttatgc tctttgccgt taagtaatgc tcgataatat aaatgccgcc cgattctctt
      961 tagaaagaaa tactgaaaac caaaattttc gggaaataat gttaatgcat attcaatatc
     1021 ttctttttta tattcgtata cttcacagtt atctgagaga gcaatatttg tcacaaactc
     1081 tggctgatct tctaaaatgg aataacgtag aaaaatacct ggttcaaata tagataagag
     1141 tttttctgga gattcatatg tataactgct tatataacca tctattagta aaacaacatt
     1201 actaaattta gaagcgttct ccattaaatt ttcgccacgt cttagcttgc gtttcgtgtg
     1261 tctaatccca tatttttgca tcatgtcaac aaactcttta tatgtaaata acttttccac
     1321 tatagcccac tccttttcta aaataattta gtaagcgata tataagttgg gcgagaactc
     1381 aacttatgtt accatgtgcg gcttggcaga ttttctccat agagatggaa taatgatatt
     1441 tcttctagaa taattctaaa aaaatttggt gaattcctcg taaataagaa aaaaagttgt
     1501 ttgttttttt gtcacaaata aatagtatgc acactgtcta tttcaaaatt actccttttt
     1561 cggcaaaaac gatgttccta tctaccccaa cttttcataa agcaaattct atgatactat
     1621 tagcataaaa acatttgtga catcgtataa cttttgttcc attatgatgt aaatggaggt
     1681 aagtagaatg aaatgggaag aaaaaagaga tatggtgaaa atcgctacgt ggtactatca
     1741 ctacggctgg acccaagcgc aaatcgccaa aaaaatcggg atttcaagat ccattatctc
     1801 taaaactttg caacgcgcaa aagacttagg cattgtggaa atctttatta aagatgaaac
     1861 ttactatacg gtagatttag aacaaaaatt agaagaaaag tttggtttag aggaagcgat
     1921 tgtcgttgca acgcacgata tgtctgagga agaagcactg aatttccttg ccaaagaagc
     1981 tgcctataca ctgagtaaaa ggattgctaa agtaaaaact ctcgggattt catgggggaa
     2041 aacaattcgc aaatttgcta atgaattccc attcatcccg cataaagact taacaattat
     2101 tccgcttata ggtggaatgg gctcgagtga tattgatctg cattccaatc aaatttgtta
     2161 tgatttaaag aaaaaaatga aatgccactc caaatatttg tatgcgcctg cgctcgttga
     2221 agatacggaa atgaaaaccg atttatccaa aaacaaatat attagcgaag tattagaaga
     2281 aggaaaaacg gttgatatgg ctattgtcgg tgtatcgagc ccttataatc acagcacaat
     2341 ggaagaaatc ggctatatta attctgaaga tattgaagaa ctacgctata aagatgttgt
     2401 cggtgatatt aattcacgct ttttcacagc agacggaaaa gaagcaaaaa ctgagattaa
     2461 cacccatgta atcggtctta gtctagagga gttgaagaac atccccaccg tcgtcgcact
     2521 tgcaaacgga ttacaaaaaa aagaagcatt agtggcagct cttaatgccg gattgataga
     2581 tgtgattgtg attactgata gaatggccga atacattctt caaaaaaacg actaaaaaat
     2641 aatcctaact ataaaattta aaatatccaa
//
LOCUS       DABQVC010000259         2649 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.260,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000259 DABQVC010000000
VERSION     DABQVC010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.260"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..694)
                     /locus_tag="IBJ56_002732"
     CDS             complement(<1..694)
                     /locus_tag="IBJ56_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3418969.1"
                     /translation="MKAIRDTSILFGRSMRHIMRSPDTIITVAIIPIMIMLMFVYVLG
                     GAIQTGTDNYVDYLLPGIILMAIASGIAYTAVRLFTDVQKGLFQRFHSMPISRSSVLW
                     GHVLTSLVSNVISIVLIILVALLIGFRSSAGIVEWLSVAGILLLFTLALTWVAVIPGL
                     TAKSVDGASAFSYPLIFLPFISSAFVPTDTMPTAVRVFAENQPVTSIVNTIRGLLYSE
                     PIGNDIWIALAWC"
     gene            complement(691..1455)
                     /locus_tag="IBJ56_002733"
     CDS             complement(691..1455)
                     /locus_tag="IBJ56_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3418970.1"
                     /translation="MKEVMIKATGLEKSFKKTEVLKGVDFEVKHGEIFALLGSNGAGK
                     TTTIQILATLLKADNGLATVSSFDVKTEPEKVRKHISLTGQFAAVDGLLTGRENILLI
                     AKLRGEKNPAQTADDLLARFGLEKAADRRADTYSGGMTRRLDIAMSLVGSPDVIFLDE
                     PTTGLDPEGRMEVWKTIKTLSDGGTTILLTTQYLDEAEQLADRIAILHGGTIIANGTL
                     DELKKLFPPAEVEYIEKQPSLEEIFLAIINGKEEVK"
     gene            complement(1653..>2649)
                     /locus_tag="IBJ56_002734"
     CDS             complement(1653..>2649)
                     /locus_tag="IBJ56_002734"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HAM3418971.1"
                     /translation="NLGFSYIKTDKRYISYWKDGEWDEGTLTEDNTLHISEGSTALHY
                     GQQCFEGLKAYRCKDGSINLFRPDRNAARIQKSCERLLMPHIPTEKFIDAVMQVVRAN
                     EEFVPPYGTGATLYLRPFVIGVGDNIGVHAAPEYIFSVFCSPVGPYFKGGMAPTNFIV
                     SDFDRAAPNGTGAAKVGGNYAASLLPGQAAKERNFGDCIYLDPATHTKIEEVGSANFF
                     GITKDDKFVTPYSPSILPSITKYSLLYLAEHRLGLEALEGDVYIDKLDEFKEAGACGT
                     AAVITPIGGIQTKDDFHVFHSETEVGPVTKRLFDELCGIQFGDVEAPEGWIYKVK"
BASE COUNT          833 a          588 c          432 g          796 t
ORIGIN      
        1 cacaccaagc aagcgcaatc caaatatcat tcccgattgg ttctgaatac agcaatccac
       61 gtatcgtatt aacaattgag gtcacgggct gattttctgc aaaaacacga actgcagttg
      121 gcatcgtatc tgttggaaca aaagctgaac taatgaatgg taaaaatatg agcggataag
      181 aaaatgcgct tgctccatct actgatttgg cagttaaacc aggaatcaca gcaacccatg
      241 tgagcgctaa tgtgaataat agcaaaatac cggctacaga aagccattcc actattcctg
      301 ccgatgaacg aaaaccaata agaagagcaa ctaaaataat gagcacaata gagataacat
      361 tagaaactaa agaagttaaa acatgacccc ataataccga agaacgacta attggcatag
      421 aatgaaatcg ttgaaataat cctttttgta catctgtaaa taatcgtacc gccgtataag
      481 caatcccact tgcgattgcc atcaaaataa ttcccggcaa caaataatct acgtaattgt
      541 ctgtccccgt ttgaattgcg cctccaagca catacacaaa catcaacata atcataattg
      601 gaataatggc aactgtaata atcgtatcag gactacgcat aatatgacgc atggagcgac
      661 caaataatat gcttgtatca cgaattgctt tcattttact tcctccttcc cattaataat
      721 tgctaagaaa atttcttcta gtgatggttg tttttcgata tattctactt cagctggcgg
      781 gaataatttt ttaagttcat ccaaggttcc atttgcaata atggttccac cgtgaaggat
      841 agcgattcta tccgcaagct gctctgcttc atctaaatat tgcgttgtta gtaatatagt
      901 tgttcctcca tcagaaagtg ttttaatcgt tttccagact tccattcgcc cttccggatc
      961 aagtccagtt gttggctcat caagaaaaat cacatctggg gagccaacga gactcatcgc
     1021 aatatccagt cgtcttgtca ttccacctga ataagtgtct gcacgccgat ccgcagcttt
     1081 ttcaagtcca aaacgtgcca ataagtcatc tgccgtttgt gctggattct tttcaccacg
     1141 taacttagca atgagtaaaa tattttctcg tcctgttaaa agtccatcta ctgccgcaaa
     1201 ttgtccggta agactaatat gtttccgtac tttttccggc tccgttttca catcaaaact
     1261 agaaactgta gcaagtccat tatccgcttt taaaagagtc gctaaaattt ggatggttgt
     1321 cgtcttgccc gcaccgtttg agcctagtaa tgcaaaaatt tcgccatgtt ttacttcaaa
     1381 atccacacct ttcaagactt ctgttttctt aaatgacttt tccaaacccg tggctttaat
     1441 catcacttct ttcatttgaa tacaaccttc tttccatttt ttattaaaac tccactactc
     1501 agtaatacag gtattctgta tcacttatta ctactacata gtaacaccga gttgctatca
     1561 tgtcaataaa aaagtcattt tctttttatt aatcagaaat gacttttgat tttgtacata
     1621 aaaaaaccgt ccgctgaacg gacggtttaa aattatttca ctttataaat ccaaccttct
     1681 ggagcttcta catctccaaa ttgaatgcca catagttcat cgaataaacg cttcgttact
     1741 ggccccactt ctgtttcact atggaataca tggaaatcat ctttggtttg aataccacca
     1801 attggtgtaa taaccgctgc tgttccacat gctccagctt ctttaaactc atctaattta
     1861 tcaatatata catcaccttc taatgcttct aaacctagac gatgctctgc caaataaagt
     1921 aacgaatact tcgtgatact tggcaaaata gaaggagaat acggcgtaac aaatttatca
     1981 tcttttgtaa taccaaagaa attagcagaa ccaacttctt ctatttttgt atgagtagct
     2041 ggatctaaat aaatacaatc accaaaattg cgttcttttg cagcctggcc tggaagtaaa
     2101 cttgcagcat agtttccgcc tacttttgcg gcacccgtac catttggagc agcacggtca
     2161 aaatcggaaa caataaagtt agttggcgcc attccacctt tgaagtaagg gccgactggt
     2221 gaacagaaaa cagagaaaat atactctggg gctgcatgaa caccaatatt gtcacctaca
     2281 ccaataacaa atggacgtaa ataaagtgtt gcacctgttc catacggcgg tacaaattct
     2341 tcattggcac gaacaacttg cataacagca tcaataaatt tttcagttgg gatgtgaggc
     2401 attaataaac gctcacagct tttttgaata cgagcagcat tccgatctgg gcggaaaaga
     2461 ttaattgaac cgtccttaca acgatatgct tttaaacctt caaaacattg ttgtccgtaa
     2521 tgaagcgctg ttgaaccctc actaatatgt agcgtattat cttctgttag cgtaccttca
     2581 tcccattccc cgtctttcca ataagaaatg taacgcttat ccgttttaat ataactaaat
     2641 cctaaatta
//
LOCUS       DABQVC010000260         2623 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.261,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000260 DABQVC010000000
VERSION     DABQVC010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.261"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            123..581
                     /locus_tag="IBJ56_002735"
     CDS             123..581
                     /locus_tag="IBJ56_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3418972.1"
                     /translation="MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFF
                     TARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTTAGKE
                     LENELGAAQRKQMAEIFANSSDTDGLHFTEVMEGYAKNRPGAALIKDFKE"
     gene            588..947
                     /locus_tag="IBJ56_002736"
     CDS             588..947
                     /locus_tag="IBJ56_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418973.1"
                     /translation="MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLL
                     PDGDLQNMVVNIKLALPCDEEKLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKE
                     DKNDLMYIVNASVETGY"
     gene            complement(972..1652)
                     /locus_tag="IBJ56_002737"
     CDS             complement(972..1652)
                     /locus_tag="IBJ56_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HAM3418974.1"
                     /translation="MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDS
                     DFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITV
                     NKEKEVGWFPVKRTSDKLSFFPESLNVFHWHQDTFALPAGATRLFASEGCLNQAFLYG
                     ENIIGLQFHFEMEKAGIETILRIDEAFITSGKYVQSVEVMREKDVPEDNKQMLEAILD
                     YLINPKTI"
     gene            complement(1759..2337)
                     /locus_tag="IBJ56_002738"
     CDS             complement(1759..2337)
                     /locus_tag="IBJ56_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418975.1"
                     /translation="MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKIP
                     KDIKELEDNSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYL
                     SDGKYVAVENYIALDKGQEYTIFLGEKDKDTYPLSSMGYGKFGGSLKEDQAVLADFNI
                     LGEVQKFDFISENTEEVKNYQLIKEQVAGKYK"
BASE COUNT          811 a          502 c          428 g          882 t
ORIGIN      
        1 gtttagcaga aaatatcttc ttaataatgc gaaaaagctt ctaaaaaagt gatacgctaa
       61 ctgttattgt gtccccttat ttatgctata ctgttgatat tgacagaaaa aggggtatat
      121 ttatgaacaa tgagcaaaac atgaatcaac aaatcgcttt attttacttt ggttataaag
      181 catttacaga gaccgctgat ttgattattg ccaaacattc actcaaaaga ttgcatcatc
      241 gtattttatt tttcacggcg cggatgcctg gacttacaat taatgaactt ttaacttttt
      301 tagaaatatc aaaacaagcc ctacaccagc cgctcgctga actgaaagag cgcgaacttc
      361 tcacgatcga gcaaggtaga cgcgacaaac gccaacgctg catcttccta actacagcag
      421 gcaaagaatt agaaaatgaa cttggtgccg cacaacgtaa gcaaatggca gaaatattcg
      481 ccaattcttc tgatactgac ggattacatt tcaccgaagt tatggaagga tatgcgaaaa
      541 accgaccagg cgccgctttg ataaaagatt ttaaggagtg atttatgatg gaacaaattc
      601 tatttatcca aactggcttt ggcgttgatg ttcacggcca aaatattaca aaagcagccg
      661 aacgagctgt aagaaatgcg atttttacga actctatgcc cggtattcaa gggcttcttc
      721 cagatggcga cttacaaaat atggttgtta atatcaaatt ggcgctaccg tgtgatgaag
      781 aaaaacttga cgaagatacc attcgcgcga ttatccctta tggcactgta actattgaga
      841 aaatggctgg cggaatgatg actacaagcg gcattttctt agaagacaaa gaagacaaaa
      901 acgatttaat gtatatcgtc aacgcttctg ttgaaactgg atactaaaga aaaaaccatc
      961 tgactttctc gtcagatggt ttttggattt attaaataat ctaaaatagc ctcaagcatt
     1021 tgtttattat cttctggaac atccttctct cgcatcactt ccacgctttg aacatatttt
     1081 ccagatgtga taaacgcctc atcaattcgc aaaatcgtct caatccccgc tttttccatt
     1141 tcaaaatgaa actgtaaacc gataatattt tcaccgtaca aaaaagcttg gttcaaacaa
     1201 ccctcactag caaataaacg cgtggcgcca gctggtaacg caaacgtatc ttgatgccag
     1261 tgaaacacat ttaatgattc tgggaaaaat gataatttgt cggaagttct tttgacagga
     1321 aaccagccta cttctttttc tttatttaca gtgatttcgc ttccgaatgt tgctgcgatt
     1381 tgttgtgcgc cgaggcagac accaaaaaca ggtttatgct gttcacttaa tcgctttatt
     1441 agcttacgtt cgtcttttaa ccacggaaat tcggctgtat catttattcc catgggtcct
     1501 ccaagtacaa ttaaaaaatc cgagtcattt ggaacatgag cattttcttc aaatagagaa
     1561 tgtattttta actgatgctg gttttctctc gcccaattcg ctataagtcc aggtccttcg
     1621 tgcggcacat gttgcaatac atcaataatc aattgatcag ctcctgtcat ttttttctat
     1681 tatgaccgaa ttctaaggtt tgtgcaactg agatttctct aaaaaacacc tggttattaa
     1741 tcaggtgttt aagtttactc atttatattt ccctgcgact tgctctttaa ttaattgata
     1801 attttttact tcctcagtat tttctgagat aaaatcaaat ttttgcactt ctccaagaat
     1861 gttgaaatct gctagaacag cttggtcctc ttttaaactt ccaccaaatt taccataacc
     1921 catactacta agaggatatg tatctttatc tttttctcca agaaaaatgg tatattcttg
     1981 tcccttatct aatgcaatat agttttcaac agcgacatat ttaccatcgc ttaaatacca
     2041 cggttctgaa atatctactt tactcccttt ttctaggttt cctttgtaac tagtcaaaat
     2101 ttctatctcg ctaatagtac taccatcctt gcctatcgtt ttattttgaa gaaatttcac
     2161 tttaacaata ttagcactat tatcctcaag ttctttaata tcttttggaa ttttgtaatc
     2221 tgctcttatt gtgatagtct tggatatttt agtgtctttg gttatttttt cattcggcga
     2281 ggaacagctt gctaagattg ttgctaacaa taatatgggc actagaatct ttttcaatag
     2341 tagagtcctc cttatatgta ttattcagct taccttccct taaattttag cataggtaga
     2401 ttatgtttta tagtacaatc catagtgaaa aaacggcttt ttattgcgtt tattgctaaa
     2461 ttgttaacag attgctcgtt tgactataat tattcacaaa aaaacaaaac caattaatga
     2521 gggttttgtt tttaggaatt tatttgcaag gaataattat aacggaaata gataatcata
     2581 agcataatag gttttcattt atatttcatc ttaagcaatt aaa
//
LOCUS       DABQVC010000261         2623 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.262,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000261 DABQVC010000000
VERSION     DABQVC010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.262"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            118..426
                     /locus_tag="IBJ56_002739"
     CDS             118..426
                     /locus_tag="IBJ56_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein SpoVG"
                     /protein_id="HAM3418976.1"
                     /translation="MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLF
                     VAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
                     "
     gene            545..853
                     /locus_tag="IBJ56_002740"
     CDS             545..853
                     /locus_tag="IBJ56_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein SpoVG"
                     /protein_id="HAM3418977.1"
                     /translation="MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLF
                     VAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
                     "
     gene            1240..2613
                     /gene="glmU"
                     /locus_tag="IBJ56_002741"
     CDS             1240..2613
                     /gene="glmU"
                     /locus_tag="IBJ56_002741"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HAM3418978.1"
                     /translation="MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTL
                     NVDKVVTIVGHGAEKVQEHLAGKSEFVKQEEQLGTAHAVLQAKAELAGKDGVTLVVCG
                     DTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDAT
                     EKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRM
                     ESFEESLGVNDRIALAEASRLMQRRINENHMRNGVTLVNPENTYIDIDVKIGQDTVIE
                     PGVMLRGETVIGDDCVVTTGSEIVNSVIGERVYVRTSSIFESKVGDDVQIGPYAHLRP
                     ESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNK
                     AKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPDDALGIARAKQDNKLGYA
                     KHLNHGK"
BASE COUNT          865 a          396 c          609 g          753 t
ORIGIN      
        1 tattgcttgc tttataaaag taattttttc tatgggggaa tttttctcga gtgtgtactt
       61 aagttgcatg tgagcattgt ttactagcag cgcaactaga ttaaggtggt gaagataatg
      121 gagattacag atgtgagatt acgacgtgtt gagacagatg ggagaatgaa agctatttct
      181 tcaataacga ttgacggtga gtttgttatt cacgacattc gtgtcatcga tggcaacgag
      241 ggtttgttcg tagctatgcc tagtaaacgt acgccggatg gtgagtttag agatatcgct
      301 catccaatta actcaggcac ccgtgcaaaa attcaagaag ccgttttagc tgcttatgaa
      361 gtagcggacg aaccagcagt aaacgaagaa agttctgcag acgaaagtat tgtagaagaa
      421 aactaaaaaa tcctcggtta gggagaacgt tgttgggaac agttggggga taaataccta
      481 agattttagc tgggataagc agattctttt tgaaagaggc aaatgggata aggagtgact
      541 aataatgcaa gtaacagatg tgagattacg tcgtgtagaa actgatggaa gaatgagagc
      601 gattgcttca atcactttag atgaggaatt tgtagttcat gatattcgcg ttattgatgg
      661 gaataacggt ttattcgtag ctatgccaag taaacgtggt gttgacggtg aattccgtga
      721 tatcgctcac ccaattaatt ctgacactcg tgcaaaaatt caagaagtag ttttagctga
      781 atatgagcgc gttggtgaag aagaagcaac tgcagtaaca gaagaagaat ctgaatccgt
      841 ttctgctgaa taatttaaaa ttttcaaggg ctagctgcgt gctagccctt tttgtgtaca
      901 tgaagcatga aaaaaatcat aaatagcctt ggtcttctat ttttgctatg gtataattaa
      961 tagcaggtta taaaacaggg aggagaattt taaatgatgt tgcaaaaaca ggtccatttt
     1021 agaaaacttt tttgtggcat aagtgtaaat tcttctttta gtaagcaaat aaataatcat
     1081 actatatctt tcggaatttt caaacaaata aaactttaaa ttgaatcttt acctaaaaaa
     1141 agtaggtaag gttttttatt tgggcgcatt cttgaaaaaa tgtaaatttt acgttatcat
     1201 tcatagtgga tgaatagtga atattggagg ttctatataa tgtcaaaacg atatgctgta
     1261 gtgcttgctg ctggccaagg cacacggatg aaatcaaaac tttacaaagt attgcatcct
     1321 gtttgtggaa aaccaatggt cgaacatgta gtagatcaaa tttcgacgct taatgttgat
     1381 aaagtggtta caattgtagg tcacggagct gagaaagtac aagagcattt agctggtaaa
     1441 agcgagtttg taaagcaaga agagcaactc ggaacggcgc atgcagtact gcaagcgaaa
     1501 gcggaacttg caggtaaaga tggtgtgacg ctcgttgttt gtggggacac gcctttaatc
     1561 gaagctagta cgatggaagc tttactgaaa tatcaccatg aaaaacgtgc aaaagcaact
     1621 attcttacaa cggttattga agatcctaca ggttatggtc gtattattcg tgatgaccta
     1681 ggcattgtag aaaaaatcgt agaacataaa gatgcaacag aaaaagaaca acgtatttcg
     1741 gaaattaaca ctgggacata ttgctttgat aataaagctc tttttgaagc gttagagaat
     1801 gtttctaacg ataatgtgca aggagaatat tacttaccag atgttattaa gattttaaaa
     1861 gattcggatg aagtcgttgc ggcttacaga atggagtctt ttgaagagtc acttggagtg
     1921 aacgaccgaa ttgccctagc tgaagcatcc agattaatgc aacgtcgaat taacgaaaat
     1981 catatgcgta atggagtaac gcttgttaat cctgaaaaca cgtatattga tatagatgta
     2041 aaaattggtc aagatacagt aattgaacca ggagttatgc ttcgtgggga aactgtaatc
     2101 ggtgatgatt gcgtggttac aaccggctcg gaaatcgtaa acagtgttat cggtgaacga
     2161 gtatacgtca gaacttcttc tattttcgaa agtaaagttg gcgatgacgt tcaaattggc
     2221 ccatatgcgc acctaagacc agaatctgac attcacgatc atgtgaaaat cgggaactac
     2281 gtcgaaacga aaaaagcagt ggttggtgaa ggaactaaat taccacattt catttacatg
     2341 ggagatgcgg aaattggtaa aaacgtcaat gttggttgcg gaagtattgc tgttaattac
     2401 gacggcaaaa acaaagcgaa aaccatcatt ggggataatg tctttgttgg ctgtaattca
     2461 aacctgattg cacctgtcaa agtgggagat cgagctttca tagctgctgg ttccacgatt
     2521 acaaaagatg ttcctgacga tgcgctaggc attgctcgtg cgaaacaaga caataaactt
     2581 ggttatgcaa aacatttgaa tcacggtaaa taatttccat ttg
//
LOCUS       DABQVC010000262         2606 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.263,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000262 DABQVC010000000
VERSION     DABQVC010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.263"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..2418)
                     /locus_tag="IBJ56_002742"
     CDS             complement(<1..2418)
                     /locus_tag="IBJ56_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HAM3418979.1"
                     /translation="MKYMVKWRGFFIVAIIGLLVFQNVSPVLATIVDEKTTMITLKII
                     KEDKDTKEKINGSSFEIKNKKTGETKEVSITEHGTIIENSLSEGEYIVKEKKAAPGYT
                     LDEQTYNVTLADKEEAITSSSTKKEAEKTPSVTEQPSKKGNLKAVITDNIFTAVKVEN
                     GTGNELGATNRIKNGGAVVLKMNFTFSGKNYKAGDTFKTVLPDSFNFGTTNLTGDFLP
                     STEAKWDLNASTRELTITFFKDGVQEGNYDIELSTALKSFSETEKTSQVAVFNTAGGN
                     TVYQLEIIPEVDKATQVMLEAMPSKVNPDKATVDARFNLTKETSELGELRLSDTAYGG
                     STIINRNSIKVYSTDISAKGTFIGSKQLLTENTDYELIYAPSGLTIKLKEGLKAKGYQ
                     VTYERSIDKTNSSLSTIGTSATTVGSSGMLSNGSMTISVTIKAYDHLIKKAVYNPVTQ
                     CIDWTINVNYDLANLTPGTVLTDVLTDDNVSYVADSLKIKRVTFNEESGEAVIGDDAS
                     NDWTVSTISDNGSFNMNYKKTDEKAYQVTYSTKLTDFSPRKIKNEVTDEKGVKATENF
                     DFKPDLLNKEAGEIDYYNNTMDWTITVNSEGINMQNINIVDEFSTGVKSLVSYNVYAY
                     PSDSGYKLLTEGRDFTIQKDVSPAGFKIKLIGNYATTDNKIVVKMKTKIDLTDGAKTL
                     DNKASFSYFDGSLTQYSETIKAEATPETSILANGGKVGKWNPATGEINWIVSVNAMGK
                     KYDKLVLDDEFLDGTTFVEGSLQYRNVVNSSELTDLSIPLEIKGTLAQVGDANYPTKI
                     DTSANKIH"
BASE COUNT          744 a          498 c          379 g          985 t
ORIGIN      
        1 atgtatttta ttggctgatg tgtctatttt ggttggataa ttagcatccc caacttgtgc
       61 taaagtccct tttatctcta gaggaatact caagtcggtc agctcggatg aattaactac
      121 attacgatac tgtaaagatc cttcaacaaa ggttgtacca tctaaaaatt catcatctaa
      181 aaccaattta tcatattttt tccccattgc attgacagat acaatccaat ttatttcacc
      241 agttgccgga ttccatttac cgaccttccc accgttagct aaaatactag tttccggtgt
      301 tgcttctgcc tttattgttt ctgaatactg ggttaaacta ccgtcaaaat atgaaaacga
      361 ggctttatta tctagcgttt ttgctccatc agttaaatca atttttgttt tcattttcac
      421 aacaatttta ttatctgttg tcgcatagtt accgataagt ttaattttaa acccagctgg
      481 cgagacgtct ttttggatgg taaagtctct accttctgtt aataatttgt agcctgaatc
      541 agaaggataa gcgtacacat tgtagctgac taaacttttt acacctgtag aaaactcgtc
      601 aacgatatta atgttttgca tattaatacc ttccgaatta actgtaatag tccaatccat
      661 tgtattatta taataatcaa tctctccagc ttctttattt agtaagtctg gcttgaaatc
      721 aaagttttct gttgctttaa cacctttttc atccgttact tcatttttaa tttttcgtgg
      781 actaaaatcg gttagttttg tagaatacgt tacttgatat gctttttcat cagttttctt
      841 gtagttcata ttaaaactac cgttgtctga tatagtcgaa acagtccaat cattagacgc
      901 atcatcgcct attactgctt ctcctgattc ttcattaaaa gtgactcgct taatcttcaa
      961 agaatctgca acataactaa cattatcgtc tgttaataca tctgttaaaa ccgtaccagg
     1021 agtcaagttt gctaaatcat aattaacatt aattgtccaa tcaatacatt gagttacagg
     1081 gttataaact gcttttttaa ttaaatgatc atatgctttt attgttactg aaatggtcat
     1141 acttccattt gataacatgc cagaacttcc aactgttgtt gctgaagtcc cgatagtact
     1201 caaagacgaa tttgtcttat caatggaacg ctcataggta acttgatacc cttttgcttt
     1261 tagaccttct tttaatttaa ttgttaatcc tgaaggtgca taaatcaatt cataatctgt
     1321 attctcagta agtaattgct ttgagccaat gaatgttcct ttagcactaa tatctgttga
     1381 gtagacctta atactattcc tattaataat agtcgaaccc ccgtaagcag tatccgatag
     1441 tctaagttcg cctagctcac tagtttcttt agttaaatta aatctcgcat ccacagtagc
     1501 tttatccgga ttgactttac tcggcatcgc ttctagcatt acctgtgtgg ctttgtctac
     1561 ttcaggaata atctctaact ggtaaactgt attaccaccc gctgtattaa acaccgctac
     1621 ctgactagtt ttttctgtct cagagaaact ttttaaagca gtactaagct caatatcata
     1681 attaccttct tgcacaccat ctttaaaaaa agtaatggtt aattcacgtg tgcttgcatt
     1741 caaatcccat ttcgcttcag ttgaaggtaa gaaatctcct gttaaattag tcgttccaaa
     1801 gttgaatgaa tctggtaaaa ccgttttaaa tgtatctcca gctttgtagt ttttccctga
     1861 gaaagtaaaa ttcattttca gaactactgc tccgccattt tttatacggt tagtcgcacc
     1921 aagttcattt ccagttccat tttccacctt tactgcagta aaaatattat ctgttataac
     1981 tgctttcaga ttcccttttt tagagggttg ttctgtaaca gatggagttt tttctgcctc
     2041 tttttttgtt gaactagaag ttatagcctc ttctttatca gctaaagtga cgttataagt
     2101 ttgttcgtct aaagtatatc ctggagcagc cttcttttcc ttaacaatat attctccttc
     2161 tgaaagtgaa ttttctataa ttgtcccgtg ttcagttata gaaacttctt ttgtttctcc
     2221 agtttttttg tttttaattt caaaagaaga accattgatt ttttcttttg tatctttatc
     2281 ttctttgatt attttaagcg ttatcattgt tgttttttca tcaacaatgg ttgctaatac
     2341 aggcgacacg ttttgaaaaa cgagtaaacc aataattgca acgataaaaa aacctctcca
     2401 tttcaccata tatttcatta agctgttttc ctcctatgca agttgtgtct gttgtataag
     2461 acctatgact tgttgaatta taacaatggg cgagaagtcg aaaatgttct taaagaacaa
     2521 caaagcggat ttattgtgtc tttttagtga acaaaaaagt atgttttttg ctaaaaatat
     2581 actttttcaa tacaaaaccc tctttt
//
LOCUS       DABQVC010000263         2557 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.264,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000263 DABQVC010000000
VERSION     DABQVC010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2557
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.264"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..269
                     /locus_tag="IBJ56_002743"
     CDS             <1..269
                     /locus_tag="IBJ56_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HAM3418980.1"
                     /translation="DQIICRNFAPLYDINEEAATGTSNGALACYLYKNHYLRKENYVF
                     EQGYSLHSPSEIFVNLVISNKDEIEKVYVGGKGYYCEMQDLSME"
     gene            complement(386..>2557)
                     /locus_tag="IBJ56_002744"
     CDS             complement(386..>2557)
                     /locus_tag="IBJ56_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3418981.1"
                     /translation="FVLIFICFLTLTTIVPWNTLETKAASTSWLEQELDGNEAFITET
                     ERVLSKNREDITLADLETIQELDIYGDASSIPDKISDYKNLNTLLALNGTISEIPTSI
                     TKLTKLTRINVDNNNFQEFPMILLQMPSLSSIEINRNKIKEIPSEITTLSPHLGSLDV
                     RYNELITLPDNIFTTEWESKLSLLTTGNQLVSDIPADWLDNFNQADNMLEFYNNPPND
                     YHQKQDQLTYSGARIEVPLNTDLKTLTPDKTKLGLKTGRTLFEQHEFMYYDDGTSNNI
                     LTNGVATATGNGYITIKSTLSTNSNPFAKVRVPITVTPPVKGGDVTVQYKDTTGVVLA
                     DSITLSGNVGENYTTTAKTIDGYSLTTTPTNANGTFSTNPQTVTYTYKKDPIAQPVTV
                     NYIDTDGKTIAPTETLSGNVGENYTTTAKTIDGYSLTTTPANANGTFSTNPQTVTYTY
                     TKDPIAQPVTVNYIDTDGKTIAPSETLTGNISENYTTTAKTIDGYSLTTTPANAKGTF
                     STEPQIINYIYAKNAETAQPITVNYRNSTGQKIAKSEVLTGNIGESYSTQPKTIAGYT
                     LTTIPPNAKGTFTTNAQTVTYMYTPIAISALPVTVNYLDENGKEIADSVVLNGRVGEA
                     YNTLAKEMDGYTLIKTPTNANGVFSAEAQSIDYIYRKNKPVVIVNPPIKNPIIKIDSS
                     TNVIKEETSVLPKTGDSNPYNDFLAGILLLSSAMFLWKNHK"
BASE COUNT          716 a          396 c          509 g          936 t
ORIGIN      
        1 ctgaccaaat tatttgtcgg aatttcgcgc cactatacga cattaatgaa gaagctgcga
       61 ctgggacctc taatggtgct ttggcctgtt atctttataa aaatcactac ttacgaaaag
      121 aaaattatgt atttgaacag ggctattctt tgcactcgcc ttccgaaatc ttcgttaatc
      181 tagtcataag taataaagac gaaatagaga aagtgtatgt gggcggtaaa ggatattact
      241 gtgagatgca ggatttaagc atggagtaac tcatggtaaa tatattccac ttcacttcat
      301 ttcattataa taaaaaaact gtaggcaaag tatttttata cttcgcctac aatctcagcc
      361 gaaaagaaag gtgtcttttc ggtttttatt tatgattttt ccaaagaaac atcgctgaag
      421 atagtagtag aattcctgcc aaaaagtcat tgtatggatt ggaatcgcca gtttttggta
      481 agacagacgt ttcttctttt attacgttgg tactagaatc tattttaata atcgggtttt
      541 tgattggtgg atttactatt actactggtt tatttttacg gtagatataa tcgattgatt
      601 gtgcttccgc cgaaaacaca ccattagcat ttgtaggagt ttttatcaac gtgtagccat
      661 ccatttcttt agctagtgta ttataagcct ctcccacacg accatttaga actacagagt
      721 cagcaatttc tttaccattt tcatctaaat agttcactgt cactggtaag gcggaaatag
      781 caatcggcgt atacatataa gttactgttt gcgcatttgt tgtaaaggtt ccttttgcat
      841 ttggaggtat tgttgtgagt gtgtaaccag caattgtttt cggttgagtt gagtaagatt
      901 ctccgatatt accagttaaa acctcacttt tcgcgatttt ttgacctgta gagtttctat
      961 aattaacggt aataggttgg gctgtctcag cgtttttcgc atagatataa ttaattattt
     1021 gaggttctgt cgaaaaagtc cccttggcat tggcaggtgt agttgttaaa gaatagccgt
     1081 caattgtttt agctgttgtc gtatagtttt cactaatatt tccggttaag gtttcagaag
     1141 gagcaattgt ttttccatct gtatcgatat aattaacagt aactggttgc gctataggat
     1201 cttttgtgta agtatatgtg acagtttgtg ggtttgttga aaaagttcca ttagcattgg
     1261 caggtgtagt tgttaaagaa tagccgtcaa ttgttttagc agttgtcgta taattttcgc
     1321 ccacatttcc gcttaatgtt tcagtgggag caattgtttt tccatctgta tcaatataat
     1381 taacagtaac tggttgcgct atagggtctt ttttataagt atatgtgaca gtttgtgggt
     1441 ttgttgaaaa agttccatta gcattggttg gtgtagttgt taaagaatag ccgtcaattg
     1501 ttttagctgt tgtcgtataa ttttcgccca catttccgga taaagtaatg gagtctgcta
     1561 acactactcc agttgtgtct ttatattgaa cggtaacatc tcctcctttt actgggggtg
     1621 ttactgtgat aggaactcgt acttttgcaa aagggttgga attggttgat aaagtacttt
     1681 tgattgttat atagccattt cctgtggcag tagcaacacc gttagttaga atgttattag
     1741 aggtcccgtc atcataatac ataaattcat gttgttcaaa taacgttctg cctgttttta
     1801 agcccagttt tgttttatca ggagttaatg tttttagatc tgtatttaat gggacttcaa
     1861 ttcttgctcc actatacgtt agctggtctt gtttttgatg ataatcattt ggtggattgt
     1921 tgtaaaattc gagcatgtta tctgcttgat taaaattatc taaccaatca gcaggaatgt
     1981 cagaaactaa ttgatttcct gtagttagta atgagagctt actttcccac tcagtagtga
     2041 agatattatc cggaagcgta attagctcat tatagcgtac atccagcgat cctaaatgag
     2101 gggataatgt ggttatttct gaaggaatct ctttaatttt atttctattt atctcaatag
     2161 aacttagaga aggcatctgt aatagaatca tcggaaattc ttgaaaatta ttattgtcta
     2221 cgttgattct tgttagtttt gttagtttag tgatactagt tggaatttct gaaatcgttc
     2281 cattaagggc aagtaaagta ttgagattct tataatcaga aattttgtcg ggtattgatg
     2341 aagcatcacc ataaatatct aattcttgta ttgtttctaa atctgcgagt gtaatatctt
     2401 cacgattttt tgacaagact ctttctgttt cagtgataaa ggcttcatta ccatctaatt
     2461 cttgttcaag ccaagaagtg gatgccgcct tcgtttcgag cgtattccaa gggacaatgg
     2521 ttgttagcgt gagaaaacaa ataaaaatta aaacaaa
//
LOCUS       DABQVC010000264         2527 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.265,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000264 DABQVC010000000
VERSION     DABQVC010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.265"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..214
                     /locus_tag="IBJ56_002745"
     CDS             <1..214
                     /locus_tag="IBJ56_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HAM3418982.1"
                     /translation="ASDIVKEEIPLLGISGTTDAAEFTKAKKEFPVIIFGPGNETPHQ
                     VNENVSIENYLEMVDVYKRIATEFLS"
     gene            361..777
                     /locus_tag="IBJ56_002746"
     CDS             361..777
                     /locus_tag="IBJ56_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAM3418983.1"
                     /translation="MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLRAVGISTAQFDCI
                     AQIGLDKEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTKTGREKHITLTEKGQAC
                     YRENVPKQEAFQQAQFDKLTRDEQKELLKLLKKLGE"
     gene            784..1743
                     /locus_tag="IBJ56_002747"
     CDS             784..1743
                     /locus_tag="IBJ56_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HAM3418984.1"
                     /translation="MKLTGIHHVSIFTANARANFDFYTKIMGLRLVKKSVNQDDPYTY
                     HLYYGDEIGSPGTALTFFEVPNMAKNHPSRNAISSLSLRVPSDEALHYWDKRLDEHRI
                     FHSKPIDQFGRKIIRLKDTDGLPVNLISGETSTQVTEVSPWEDSPVPAEYAIRGLGPV
                     RFSVFKKEKTDRLLTKILGFERIGAYEDDDKLVTVFKTGDVGLGGEVHVESRPDLEQG
                     NLGAGGIHHVAFRVPTDGDLIGWTEMIQDLGYKNSGYVDRFYFHSLYFRESNGILIEL
                     ATDEPGFQTDFTKEHGTYVDLPPHLEERREDILAHLKPLDTDK"
     gene            1815..2450
                     /locus_tag="IBJ56_002748"
     CDS             1815..2450
                     /locus_tag="IBJ56_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HAM3418985.1"
                     /translation="MAEGLRTIYFVRHGKTEWNMTGQMQGWGDSPLVAEGIDGAKAVG
                     EVLKDTPIDAVYTSTSKRTQDTAAYILGDREIEIQPLEELKEMGFGTWEGIRVTEIDE
                     QHPEERAKILHSPETYKAEVNGGETYYELAERLLEGVEKIIAENLSGNILVVSHGMSL
                     TLLLYLLQGGTVEDHRKEAPRILNTSISIVEYQNGEFSLKKINEIGHLDLK"
BASE COUNT          865 a          471 c          551 g          640 t
ORIGIN      
        1 agcaagcgac attgtcaaag aagaaatccc attactcggt atttccggaa caaccgatgc
       61 agcagaattt accaaagcta agaaagagtt cccagtgatt atttttggac caggaaacga
      121 aacccctcac caagtaaacg aaaatgtttc tatagagaat tatttggaga tggtagatgt
      181 ttacaaacga attgccaccg agtttttatc gtgatggaac tttaacttta cttatttttc
      241 gctataaaat acgtaattaa ataaaagtct agtatttgtt tgtaaacagg tgctaggctt
      301 ttttcttgct tttaatacag tttagtacta aactaataat atcaagagga ggggacgagc
      361 atggtaaaaa aagaagaaag gctaggggtt ttgctttggt ttcgatttag tcgattttac
      421 aatcggaata tgaagctgac caatcagaat ttgcgagcgg taggaatttc gacagcgcag
      481 tttgattgca ttgcccagat tggcttagac aaagagatta cacagcaaca acttgccgaa
      541 aaattagttg taacgaaggg aaatgttacc caactcctcg cgaaattaga acaattaggt
      601 tatatcacgc gaacaaagac agggcgcgaa aaacatatta ccctcacaga aaaaggccaa
      661 gcgtgttacc gcgaaaacgt gccaaaacaa gaagcttttc agcaagctca atttgataaa
      721 ttaacaagag acgaacaaaa agaactactt aagctattaa aaaaattagg agagtgatta
      781 tttatgaaat taacgggaat tcatcacgta tctattttta cagcgaacgc acgagctaac
      841 tttgactttt atacaaaaat aatgggacta cgactagtga aaaaatcggt taaccaagat
      901 gacccttata cgtaccactt atattacgga gacgaaatcg gttcgccggg gacagcgcta
      961 actttctttg aagttccaaa tatggccaaa aaccacccat cacgcaatgc gatttctagc
     1021 ctcagcttac gtgttccaag cgatgaagcc ttgcactact gggataaaag actcgatgag
     1081 catcgcattt ttcacagtaa accaatcgac caattcgggc gcaaaattat tcgtttaaaa
     1141 gacacagatg gcttaccggt caatttgatt tccggtgaaa caagcacaca agtaaccgag
     1201 gtgagccctt gggaagatag cccggttcca gcagaatatg ccattcgcgg acttggccca
     1261 gtgcgcttct ctgttttcaa aaaagaaaaa acagatcgtc ttttgacaaa aatattaggc
     1321 ttcgagcgga tcggtgccta tgaagatgac gataaattag ttacagtatt caaaactggc
     1381 gacgttgggc ttggcggaga agtgcatgtg gagtcgcgac ctgatttaga acaaggaaat
     1441 ttaggtgctg gcgggattca tcacgtggcg tttcgtgtac cgacagatgg cgacttgatt
     1501 ggctggacag aaatgattca agaccttggc tacaaaaatt caggatatgt ggaccgtttt
     1561 tatttccact ctctttattt tcgcgaaagc aatggcattt taatcgaact tgcaaccgat
     1621 gaaccaggtt tccaaaccga tttcacgaaa gagcatggaa cttacgttga tttaccgcca
     1681 catttagaag aacgccgcga agatattttg gctcatttaa aaccacttga tacagataaa
     1741 taaataagaa aaccttgaaa atatgcctat tcatgataca attttagaag aatgtgtaat
     1801 taggaggcag aattttggca gaaggtttac gtacaattta ttttgtaaga catggtaaga
     1861 cggaatggaa tatgactgga caaatgcagg gatggggcga ttcgccgcta gttgcagaag
     1921 gtattgacgg ggcaaaagca gttggcgaag tgttgaaaga tacaccaatt gatgcggttt
     1981 atacaagtac aagtaaacgc acgcaagata ccgcggctta cattcttggc gaccgcgaaa
     2041 tcgaaattca acctctggaa gaactaaaag aaatgggatt tggaacgtgg gaaggcatta
     2101 gagtaactga aattgacgaa caacaccctg aagaacgcgc aaaaattctc catagcccag
     2161 aaacctacaa agcagaagtg aacggcggcg agacttatta tgaacttgca gaacgactgt
     2221 tagaaggcgt cgaaaaaatc attgcagaaa atctaagcgg caacattctc gtcgtttctc
     2281 acggcatgtc gctcacgtta ttattatact tgctgcaagg cggaacggtt gaagatcacc
     2341 gcaaagaagc gccaagaatc ttgaacacaa gtattagcat cgtagaatac caaaacggcg
     2401 aattttctct taaaaaaatc aatgaaatcg gtcatttaga cttaaaataa gtagaatctt
     2461 ggacatatct cattggaggt gtgtcctaga tttatacata agagaaagct agaaaaaggg
     2521 agaaaac
//
LOCUS       DABQVC010000265         2463 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.267,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000265 DABQVC010000000
VERSION     DABQVC010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.267"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(98..826)
                     /locus_tag="IBJ56_002749"
     CDS             complement(98..826)
                     /locus_tag="IBJ56_002749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3418986.1"
                     /translation="MAQNQTKYSFIAEEIRKRIMNHAYPLNQPIPDEITLAKEFDCSR
                     MTMKKALEVLVLEGLLYRKRGHGTFIIKSALDADRLQIHNQEVNGFTKLLNGKKVISK
                     VIEFKVIFPTEEIAERLHIEMETPIYDILRVRLVKDEPYVLEHTYMPVGVIPGINQQI
                     LEGSIYSYIQDDLNLKIASSYKQIRADKATLLDQQYLDCASDDPVVEVEQTVYLNNGL
                     AFEFSKSRHRYDKFVFTTVNIARR"
     gene            complement(870..2264)
                     /locus_tag="IBJ56_002750"
     CDS             complement(870..2264)
                     /locus_tag="IBJ56_002750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HAM3418987.1"
                     /translation="MTYKFPENFWWGSAASGPQTEGAANVDGRKPSIWDHWYKIEPGR
                     FFNDVGPTNTSNFYYQYKEDIALMKQTGHNSFRTSIQWTRLIPDGIGEVNPKAVDFYN
                     RVIDEMLANDVEPFMNLYHFDMPMSMQEKGGFESREVVDAYATFAKTCFELFGDRVKH
                     WFTFNEPIVPVEAGYLYDMHYPNVVDFKRATQVAYHTTLAHALAVKEFHALEIPEGQI
                     GIILNLTPSYPRSQNPADLKTAHIADLIFNRSFLDPVTKGEFPADLVEIIREHDALPE
                     YTEEDLAIIKNNIIDILGVNYYQPRRVKAKEYATHPDAPFMPEHLFDNYEMPYRKMNP
                     YRGWEIFERAIYDIAINLRDNYDNIPFFISENGMGVEGESRYRNADGMIEDTYRIDFI
                     KSHLKWLHKAIEEGANCHGYHLWTFMDCWSWANAYKNRYGLVEVDLDNNFKRTIKASG
                     HWYKELSENNGFED"
     regulatory      2385..>2463
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00167"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="purine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="guanine and/or adenine"
                     /db_xref="RFAM:RF00167"
BASE COUNT          722 a          501 c          425 g          815 t
ORIGIN      
        1 aaaagtgaat ctaataatga cctatacttc attaattctt cctaaaaaaa gaaactagat
       61 aaaatgattt ctcacttttt ctagtttctt ttttacttta tcgtctagct atattcactg
      121 ttgtaaacac gaatttatca taacggtggc gcgatttgga aaattcaaac gcgagaccat
      181 tgtttaaata cacggtttgt tctacttcga caacgggatc atcagaagcg cagtcgagat
      241 attgctgatc aagcagtgtc gctttatccg cgcgaatttg tttgtaggaa ctagcaattt
      301 ttaggttcaa atcgtcttga atgtacgaat aaatcgaccc ctctaaaatt tgctgattaa
      361 tgcctgggat aaccccaact ggcatatacg tatgttctag cacataaggt tcatctttca
      421 ctagccgaac acgaagaatg tcatagattg gtgtttccat ttcgatatga agacgctctg
      481 caatttcttc agttggaaag ataactttaa actcaataac tttactaata actttcttgc
      541 cgttcaaaag tttagtgaag ccgtttacct cttggttatg aatctgtaag cggtccgcgt
      601 ccagcgccga tttgataatg aaagtaccat gtccgcgttt acgatatagt aagccttcaa
      661 gaacaaggac ttccagtgct tttttcattg tcattcgact acaatcaaac tctttcgcca
      721 aagttatctc atcaggaata ggttgattaa gcggataggc gtgattcata attcttttgc
      781 ggatttcttc agcaataaag ctatatttcg tctggttctg agccacggaa gttcacctct
      841 ttacacataa tacttttatt ttatcacatt tagtcttcaa aaccattgtt ttctgaaagt
      901 tctttgtacc aatgtccgga tgcttttata gtacgtttga aattattgtc taaatcaact
      961 tctactaagc cataacggtt tttgtaagca ttcgcccagc tccagcaatc catgaacgtc
     1021 caaaggtggt aaccgtgaca attagcgcct tcttcaattg ctttatgaag ccatttcaag
     1081 tgactcttaa tgaaatcgat tcggtacgtg tcttcaatca ttccatctgc attacggtag
     1141 cgactttcgc cttccacacc cataccattt tctgaaatga agaatggaat attatcgtag
     1201 ttatcacgca gattaatcgc aatatcataa atcgctcttt cgaaaatttc ccaaccacgg
     1261 tacggattca ttttgcggta aggcatttca tagttatcaa aaagatgttc tggcataaat
     1321 ggtgcatccg ggtgagttgc gtattctttc gctttcacac gacgcggttg atagtagttt
     1381 acaccaagaa tatcaataat gttgttttta attatcgcca aatcttcttc agtatattct
     1441 ggaagcgcgt catgttcgcg aataatttca acaaggtcag ctgggaattc cccttttgta
     1501 accggatcaa ggaaactacg gttgaaaatt aaatccgcaa tatgagctgt ttttaaatct
     1561 gccggatttt ggcttcttgg atacgacggt gttaagttta aaatgattcc aatttggcct
     1621 tctggaattt caagtgcgtg gaattcttta acagcaagcg catgtgccaa agtagtatgg
     1681 taagcaacct gagtcgcacg tttaaaatca acgacattcg gatagtgcat atcgtataag
     1741 taacctgctt caacaggaac aattggttca ttaaaagtaa accaatgttt cacacgatct
     1801 ccgaataatt caaaacatgt tttcgcaaaa gttgcatacg cgtcaactac ttcacggctt
     1861 tcaaaaccgc ctttttcttg catcgacatt ggcatatcaa aatgatataa attcataaat
     1921 ggttccacgt catttgcaag catttcatca ataacgcgat tgtaaaaatc aaccgctttc
     1981 ggattcactt cgccaatacc atctggaata agacgtgtcc actgaatcga agtacggaaa
     2041 gaattatgcc cagtttgttt cattaaagca atatcttctt tatattgata gtaaaaatta
     2101 gatgtattcg taggtcctac atcgttaaag aaacgacctg gttcgatttt gtaccagtga
     2161 tcccaaatac tcggttttct gccatctaca tttgctgcgc cttctgtttg tgggccggac
     2221 gccgcacttc cccaccaaaa attctctgga aatttataag tcatttttct acctccaact
     2281 attatttgct tttattatac cttatttatt taaaagtata aacttattta tttaaaagtt
     2341 cgttttttat ttttatttct tacacgtatt gccaaaaatc ggctaatccg ctacaataat
     2401 aaagtcgtat aagttcggta atatggaccg ttcgtttcta ccaggcaacc gtaaaatgcc
     2461 agg
//
LOCUS       DABQVC010000266         2459 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.268,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000266 DABQVC010000000
VERSION     DABQVC010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.268"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            97..1110
                     /locus_tag="IBJ56_002751"
     CDS             97..1110
                     /locus_tag="IBJ56_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HAM3418988.1"
                     /translation="MFGFGNKDIGIDLGTANTLVYMKGKGIVLREPSVVAMKKDTQEI
                     VAVGSDAKNMIGRTPGNIVAIRPMKDGVIADYDTTAAMMKYYIQKAGKSVNASKPRVM
                     ICVPSGITGVEKRAVIDATRQAGAKDAFTIEEPFAAAIGAGLPVGEPTGSMVVDIGGG
                     TTEVAVISLGGIVTSRSVRTAGDDLDEVIINYIRKKYNLLIGDRTAEAIKMEIGSASP
                     NGLDLSPFSIRGRDLVTGLPKTIEITPEEISEALADTVAAIIDAVKGTLENTPPELSA
                     DIMDKGIVLTGGGALLRNLDTVISEETKMPVIIADEPLDCVAIGTGKALENMDMYKRK
                     KMN"
     gene            1196..2083
                     /gene="mreC"
                     /locus_tag="IBJ56_002752"
     CDS             1196..2083
                     /gene="mreC"
                     /locus_tag="IBJ56_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HAM3418989.1"
                     /translation="MPQFFLNKRLIILLISIIVLVALVGFSLRDRENASWPEQFVKDV
                     VGFGENIVAKPTSFISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKD
                     LKESLDITDSIRDYDPLNASVISRNPTNWNDQVEIDKGSSDGVKPDMAVTTPSGLIGK
                     VTTTGAKSATVELLTSSDVKNRVSAKVQGKENAFGIINGYDSDTKLLELKQLPYDMKF
                     KKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIKPGADMYDLNHVTVLKRS
                     AEAGTTDDDTTSSDTTGGQ"
     gene            2086..>2459
                     /gene="mreD"
                     /locus_tag="IBJ56_002753"
     CDS             2086..>2459
                     /gene="mreD"
                     /locus_tag="IBJ56_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HAM3418990.1"
                     /translation="MNVKKNIALPAIMVGTFILEGVFSLQFANGLFNDRHLFIPHFLL
                     IMLTIMTCFYKRNTTLAYAFILGLLFDIYYTGVMGIYFAIFPFTVYITDKFMKVLQNN
                     ILLVGLIAIFNIILTESLVYAF"
BASE COUNT          820 a          354 c          524 g          761 t
ORIGIN      
        1 cattgacaca aagggataag gtaacattaa tttaatggac gaataaggaa acttaatgta
       61 tcctgtagaa tattacgaag gaaaaggaga atacagatgt ttggatttgg taataaagat
      121 attggaattg atttaggaac agcgaacaca cttgtctata tgaagggaaa aggtattgtc
      181 cttcgtgaac cttccgttgt agcaatgaaa aaagacactc aagaaatagt tgcagttggt
      241 agcgatgcaa aaaatatgat tggtagaaca ccaggaaata tcgttgcaat tcgtccaatg
      301 aaagatggtg ttattgctga ttatgataca actgcagcaa tgatgaagta ttacatacaa
      361 aaagctggta aaagtgttaa tgcaagtaaa ccacgcgtaa tgatatgtgt accttctgga
      421 attacaggtg tagaaaaacg tgctgttatt gatgcgactc gtcaagcagg agctaaagat
      481 gcatttacaa ttgaagagcc atttgctgcg gctattggtg ctgggcttcc agttggcgag
      541 cctacaggta gcatggttgt agatattggt ggaggaacta cagaagttgc tgttatttct
      601 ctaggtggta ttgtaaccag tcgctctgta agaactgctg gtgatgattt agatgaagtt
      661 atcattaatt acattcgtaa aaaatataat ctattaattg gtgatcgtac tgccgaagca
      721 atcaaaatgg aaattggctc agctagtcca aatggtttgg acttatctcc atttagcatt
      781 cgaggacgtg atttagtaac tggacttcct aaaactattg aaattactcc agaagaaatt
      841 agcgaagcac ttgctgatac agtagcagcg attattgatg ctgtaaaagg aacacttgaa
      901 aatacgccac cagaattgtc agctgatatt atggataaag gtattgtact cacaggtggg
      961 ggagctcttt tacgtaattt agatacagtt atttccgaag aaacaaaaat gcctgttatt
     1021 attgcagatg aaccacttga ttgtgttgca attggaacag ggaaagcttt ggaaaatatg
     1081 gatatgtata aacgcaaaaa aatgaactaa atggacacgc tcatttatgt catataacaa
     1141 gatgaattag cttcaaaaaa atggaaaaag agtactaacg agatgaggtg tcgttatgcc
     1201 acaatttttt ctcaataaac gtttgattat cttgttaata tctattattg ttctcgtcgc
     1261 gctagttggt ttttctttac gtgatcgtga gaatgcttcg tggccagaac aatttgtgaa
     1321 agatgttgtt ggatttggcg aaaatatagt agctaagcct acttcattta tctcaggtgc
     1381 agttgatgga gtggttgatt taaaaaacac ttatactgaa aaccaacatc taaaagaacg
     1441 tttagaagaa ttggcacaac ttgaaagtga agttgcagac ttaaaaaaag aaaataaaga
     1501 tttaaaagaa agtcttgata ttacggatag tattcgtgac tacgatccac ttaatgcttc
     1561 tgttatttct agaaatccta ctaattggaa tgatcaagta gaaatcgaca aaggttcaag
     1621 tgatggagta aaaccggata tggcagttac aacaccaagt ggtcttattg gtaaagtaac
     1681 aacgacaggc gctaaatcag ctacggttga attattaact tcgtcggatg ttaaaaaccg
     1741 tgtttctgct aaagtgcagg gcaaggaaaa tgcattcggg attatcaatg gttatgacag
     1801 tgatactaag ttattagaat taaaacaatt accgtatgac atgaaattta aaaaaggaca
     1861 gaaagttgtt acttctggac tcggtggaaa attcccagca ggtatcttta tcggtacaat
     1921 tgaaaaagta gaaactgata aaatgggatt atctcaaacc gcgtttatta agccaggtgc
     1981 tgacatgtat gatctaaatc atgttactgt gttgaagcgt tcagcggaag cagggacaac
     2041 ggatgacgat acaactagtt cagacacgac tggaggacaa taatcatgaa cgttaagaaa
     2101 aacattgcac ttcctgcaat catggttgga acctttattc ttgagggtgt ttttagtctt
     2161 cagtttgcga atggtctgtt taatgataga catcttttta ttccacattt tttacttatt
     2221 atgttgacga ttatgacttg tttttataaa cgaaatacga ctttagcata tgcttttatt
     2281 ctaggcttgc tgtttgatat ttattatact ggcgtgatgg gcatttattt tgctatcttc
     2341 ccgtttacag tgtatatcac agataaattt atgaaagtgt tgcaaaataa tatacttttg
     2401 gttgggttaa ttgcgatatt taatattatt cttacagaaa gtttagtata tgcgtttta
//
LOCUS       DABQVC010000267         2427 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.269,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000267 DABQVC010000000
VERSION     DABQVC010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.269"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..167)
                     /locus_tag="IBJ56_002754"
     CDS             complement(<1..167)
                     /locus_tag="IBJ56_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosugar-binding protein"
                     /protein_id="HAM3418991.1"
                     /translation="MSATSLYRLFAPQIEFLSPAEKQVFFYIDNHISTIEKMSLTSLA
                     ESTNVSTTTVI"
     gene            333..2291
                     /locus_tag="IBJ56_002755"
     CDS             333..2291
                     /locus_tag="IBJ56_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIA"
                     /protein_id="HAM3418992.1"
                     /translation="MKLSDITSEPLIFLDKDWRTKEEVFDGLIDALHNQGVLSDKNEF
                     KKAVLEREKISETGLEKGFAIPHGKSKAVKKAAFAFARINQPINSWGSIDPTNEVKYI
                     FLLAIPENEAGSTHLELLAALSKRLLDPAFIESISTAPTVNEFITVLDSEQQEDEKVD
                     YTRKIVAITACAAGIAHTYMAAEALELAGKELGIEVIVEKQGANGIEDRITPEILKGA
                     EAVIFATDITAKDKERFAGMPFIQRRVAEPLRSGKEMIETVLSKPDGYVKADTDGSEQ
                     QFDNNKSSVFSQIYRGILTGISYMLPVIVAGGLMIGIGQLGATAFGLEKVIGNPEYAT
                     NSNQLIVIFHYLGLYGNMIMKFMYPVFGAFLAYSIADRPGLAPGFIGGAFAAGLHYTF
                     WGIDGGIPSGFFGVLILGIIAGFVAKFLNEKIKLHKNLQAMKPMFLIPGITVLVLFFV
                     NYYVVDPVFGGLNAWLQELIIQNQDASAVLLSTIIACLTAFDLGGPVNKAAGAIAIGL
                     AADGIFPLTARVLAIVIPPIGLGLATVLDKYVVKRRVFDENLRVAGTTSIFLGFIAIG
                     EGAIPFMLQNPLITIPINMIGASLGAVTAVLLGAVQWLPLPAIWGWPLVENFWAYAIG
                     LIVGIAFITFANIFVRYGLITRKENKIK"
BASE COUNT          742 a          439 c          497 g          749 t
ORIGIN      
        1 ctaataacgg ttgtggtgct gacattggtt gactccgcta gagatgtgag ggacattttt
       61 tcaatggtag aaatatggtt gtcaatatag aagaaaactt gtttttcagc aggacttaaa
      121 aattcaattt gaggcgcaaa caagcgataa agtgaagtag ctgacataat aaatacctcc
      181 atggctatcc gaattaattt tagtatacat gaaataaaag cgaatgaaca acactgcgta
      241 caattgtacg attttcgtac tttttcaaaa aaataatatg gtataactaa agtaacctag
      301 ggaaaagact gttaataaag gagctgatag cattgaaatt aagcgatatt acatcggagc
      361 cactcatctt tttagataaa gattggcgca ctaaagaaga agtatttgat ggattaattg
      421 atgctttaca caatcaagga gttttgtcag ataaaaatga attcaaaaaa gctgtcttag
      481 aacgcgaaaa gatttctgaa actggtttag agaaaggttt tgctattcca catggtaaat
      541 ctaaagctgt taaaaaagct gcttttgcat ttgctcgtat caatcaacca attaattctt
      601 ggggcagcat tgatccaaca aatgaagtaa aatatatctt tttattagct attccagaaa
      661 acgaagccgg atcaactcat ttagaacttt tggcagcttt aagtaagcgt ttactcgatc
      721 ctgcttttat tgagagcatt tctaccgctc cgacagtaaa cgaatttata accgtgctag
      781 attctgaaca acaagaagat gaaaaagtag attatacacg aaaaatcgtt gctattacag
      841 catgtgcagc gggtatcgcc catacgtata tggcagcgga agcccttgaa ctagctggta
      901 aagaacttgg tattgaagtt atcgtcgaaa aacaaggtgc gaatggtatt gaagaccgca
      961 ttactcctga aatccttaaa ggcgcagaag cagtcatttt cgcgacagat attaccgcaa
     1021 aagataaaga acgtttcgcc ggaatgccct ttatccaaag acgtgtcgct gagccacttc
     1081 gtagtggtaa agaaatgatt gaaactgtat taagcaaacc agatggctat gtcaaagctg
     1141 atacagatgg ttcagaacaa caatttgata ataataagag cagtgttttc tcgcaaattt
     1201 atcgtgggat tttaactggt atttcttata tgttacctgt tattgtcgca ggtggtttaa
     1261 tgattggtat tggccaactt ggcgcaactg cctttggtct tgaaaaagtt attggtaatc
     1321 cagagtatgc aacaaactct aaccagctta ttgtaatctt ccattatctc ggtttatacg
     1381 gaaatatgat tatgaaattc atgtatcctg ttttcggtgc cttccttgct tactcaattg
     1441 ctgaccgtcc tggacttgct cccgggttta tcggtggtgc tttcgcagca gggctacatt
     1501 acaccttctg gggcatagat ggcggtatac catctggatt cttcggtgtt ctaattttag
     1561 gtatcattgc cggatttgtt gctaaattct taaacgaaaa aattaaatta cacaaaaatt
     1621 tacaagctat gaaaccaatg ttcctgattc cagggattac cgttttagtc ttgttcttcg
     1681 tcaattacta tgtggtcgac ccggtattcg ggggcttaaa cgcatggtta caagaactaa
     1741 ttattcaaaa tcaagatgca agtgctgtac tactttcgac aattattgct tgtttgactg
     1801 catttgactt aggtggacca gtcaataaag cagctggagc tatcgcaatc ggactcgcag
     1861 cagacggaat tttcccgcta actgctcgtg ttttagcaat cgttatcccg ccaatcggac
     1921 ttgggcttgc gactgtatta gataaatatg ttgttaaacg tcgtgttttt gatgaaaact
     1981 tacgtgttgc aggtacaacc tctattttcc tagggtttat tgccatagga gagggcgcga
     2041 taccgtttat gctacaaaat ccacttatca ctattccaat taatatgatt ggtgcttctc
     2101 ttggtgcggt tactgccgtt ttacttggtg cagtacaatg gcttccactc ccagcaattt
     2161 ggggttggcc gctcgttgaa aatttctggg cctatgcgat tggtttaatc gtaggtatcg
     2221 cctttatcac attcgcgaat atcttcgtac gctacggctt aatcacacgt aaagaaaata
     2281 aaatcaaata aaaaaatagg ctgacaggta ctctcgttag tacctgtcac ttaatttgag
     2341 aggtttttaa aatgaaaaaa aataaaattg tacatgttgt cgcacattcc cactgggatc
     2401 acgaatggta tttcaccatg gaagatt
//
LOCUS       DABQVC010000268         2410 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.270,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000268 DABQVC010000000
VERSION     DABQVC010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.270"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            65..2389
                     /locus_tag="IBJ56_002756"
     CDS             65..2389
                     /locus_tag="IBJ56_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HAM3418993.1"
                     /translation="MINKKWMKIVMIPMLVVPMYGLTTVGGQLQDSLTGENSFVKEVE
                     AATTASQQAFIDKIAPAAQASQEKYHLLSSITLAQAILESGWGKSGLATQGYNLFGIK
                     GKYNGQSVIMTTSEYVNGEWIKIDAEFRKYPSWNESVTDHTLLLVNGTSWNKDLYKKV
                     VDATDYKVAAMELQKAGYATSPTYGASLIQVIENYDLAKYDVLYDKILTQKSTSGKAT
                     VTSPTGNGVWTLPYKVKGVQSVSPASTYANKDIDLVSVATTKRGTYYQFKYNGKVVGW
                     VDGKALTIYDSVNYDKVNVGRAKITSPVSNGIWSKPYNVYGREFVTNATTYAQQEIKL
                     LREAQTAKGTYYQFSINNKTIGWIDKRALTIYPYDSIISSKNVNLDGQITNPTGNGIW
                     TKAYKLEGTTSVAQATKYANKDVKISQQIETQHGTYYNISIDGKAIGWLDRNAITLYD
                     QEEYNKTVAIDAVVKNVKGNAVWTEPYRTVGTKLIGPAETYLNKEVEVVREAKTPKGT
                     YYQFKSGGKVIGWLDKKAFDVYDNINYNKAVNLDAVVENVTGNAVWTAPYKSKGVKLV
                     TSAATYKGKATKITREAQTSRGTYYEFSVDGKVIGWLDKKAFDVYDNINYNKAVNLDA
                     VVENVTGNAVWTAPYKSKGVKLVTSAATYKDKATKITREAQTSRGTYYEFSVNGKVIG
                     WLDKKAFDVYDSIEYNKAINMTGLLSNAPGNGIWTEPYRVIGTKNVGQATAYANKTVQ
                     LIREAKTTRATYYQMSVNGKIVGWVDKRAFTNVK"
BASE COUNT          897 a          367 c          497 g          649 t
ORIGIN      
        1 ttacggaggc ataaagtttg gtaaaattag gacaataaac aaattaagga gtggttggag
       61 aataatgata aataaaaagt ggatgaaaat tgtaatgatt ccgatgctag ttgttccaat
      121 gtacggtttg acaactgttg gcggacaatt acaagattca ttaactggag aaaattcctt
      181 tgttaaagag gttgaagctg caacgacagc atcgcaacaa gcatttatcg acaaaatagc
      241 acctgctgcc caggcatctc aagaaaaata tcatctgtta tctagtataa ctttagctca
      301 agcaattcta gaatctggtt ggggaaaaag tggacttgct acacaaggat ataatttatt
      361 tggtataaaa gggaaatata atggacaatc agttatcatg acaacttctg aatatgtgaa
      421 cggtgagtgg attaaaattg atgctgaatt ccgcaaatac cctagctgga atgaatctgt
      481 cactgaccat actcttttat tagtgaacgg aacttcttgg aataaagact tatataagaa
      541 agttgtcgac gcaacggatt ataaagtagc tgcaatggag cttcaaaaag ctggatatgc
      601 aacctctcct acatatggtg ctagcttaat tcaagtaatt gagaattatg atttagccaa
      661 atatgatgtt ttatacgaca aaattcttac tcaaaaatcc acttccggaa aagcaactgt
      721 tacaagtccg actggaaatg gtgtatggac tttaccgtat aaagtaaaag gagtgcaatc
      781 tgttagtcca gctagcacat acgctaacaa ggatatcgat ttagtatctg ttgctacaac
      841 aaagagaggt acgtactatc aatttaaata taatggtaaa gtagttggtt gggtagatgg
      901 caaagcatta actatttatg atagtgtcaa ttatgataaa gtaaatgtcg gacgtgctaa
      961 aattactagc ccagtaagta acggtatctg gtctaaacca tacaatgttt atggaagaga
     1021 atttgttacg aatgcaacaa cttacgcaca acaagaaatt aaacttttac gcgaagcaca
     1081 aactgctaaa ggtacttatt accaatttag cataaataat aaaactattg gttggattga
     1141 taaacgagct ctcactatct atccgtatga ttccattatt tcaagtaaaa atgtgaacct
     1201 tgacggacaa attactaatc caaccggaaa tggtatttgg actaaagcgt acaaacttga
     1261 aggaacaact tctgtggcgc aggctacgaa atatgcaaat aaagatgtga aaatcagcca
     1321 acaaatcgaa actcaacatg gtacttatta caatatcagt atcgatggga aagcaattgg
     1381 ttggttagat agaaacgcta ttacactgta tgatcaagag gaatacaata aaacagttgc
     1441 tattgacgca gtagtaaaaa atgtgaaggg taatgctgta tggacagaac cttaccgtac
     1501 agttggtaca aaattaatcg gaccagcgga aacttacttg aataaagaag tggaagtcgt
     1561 ccgtgaagca aaaacgccaa aaggaactta ctaccaattt aaatctggtg gcaaagtaat
     1621 cggctggtta gataaaaaag ctttcgatgt atatgacaat attaattaca acaaagcggt
     1681 taatttagat gctgtagtgg aaaatgtgac aggtaatgca gtttggacgg ctccttataa
     1741 gagtaaaggt gttaaacttg ttacttcagc agcaacctat aaaggcaagg caacaaaaat
     1801 aactcgtgaa gcgcaaacaa gtagaggaac atattacgag tttagtgttg atggtaaagt
     1861 cattggctgg ttagataaaa aagctttcga tgtatatgac aatattaatt acaacaaagc
     1921 ggttaactta gatgctgtag tggaaaatgt gacaggcaac gcagtttgga ctgctccata
     1981 taagagtaag ggtgttaaat tagttacttc agcagccaca tataaagata aagcaactaa
     2041 aataactcga gaagcgcaaa caagtagagg aacttactac gaatttagcg taaacggcaa
     2101 agtaatcggt tggttagata aaaaagcttt tgatgtatat gattctattg agtacaataa
     2161 agcgattaat atgactggat tacttagcaa cgcgccaggt aatggcattt ggacagagcc
     2221 gtatagagtt attggcacaa aaaatgtagg acaagcaact gcttatgcta acaagacagt
     2281 acagttgata cgcgaggcta agactacacg tgcaacttac tatcaaatga gtgtaaatgg
     2341 taaaatagtt ggttgggtag ataaacgagc ttttacaaac gttaaataga ctaaaaataa
     2401 tcatataaaa
//
LOCUS       DABQVC010000269         2259 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.271,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000269 DABQVC010000000
VERSION     DABQVC010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.271"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(172..475)
                     /locus_tag="IBJ56_002757"
                     /pseudo
     CDS             complement(172..475)
                     /locus_tag="IBJ56_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958746.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            579..1556
                     /locus_tag="IBJ56_002758"
     CDS             579..1556
                     /locus_tag="IBJ56_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HAM3418994.1"
                     /translation="MKITDPLYGTFEIEPVLAELIQSPLVSRLAYVHQGGSSYLVNPL
                     WDLSRLDHSIGVMLFIRKFGGSLEEQIAGLLHDVSHTAFSHVVDYALDFEEEDYHEQI
                     FEDFVKTSTIPAILEKYGYSFEGIFDDISKWKILEQEAPELCADRIDYTLQDLYRHRK
                     ISLAEVEEFLQALVMVDGRLYLANIALAEWFVAQYYSEVIDYFYDPLNVYSYEILAEA
                     MRIAFQQETITTADLRLTDTELLAKLNANSDAREKIQLLASAHLEENEADFTYHHKKK
                     MRLINPSILVDGRLIPADELSEKVRKMNDWASERSKHGIYIKATKKSKQ"
     gene            complement(1639..1881)
                     /locus_tag="IBJ56_002759"
     CDS             complement(1639..1881)
                     /locus_tag="IBJ56_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418995.1"
                     /translation="MKRIILTSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLIC
                     FLATGIVNVKKKEYLWSTMLFEGVLVVLLSLIIVLV"
BASE COUNT          671 a          388 c          426 g          774 t
ORIGIN      
        1 ttgtgtcaat atacataatt ttatacattg aaaaataaaa taagccattt aaaccttcta
       61 ataaataacc tatttcatat agaaccataa tcccacgtgt ataaaccgta tttttataca
      121 cgtgggatta ctttataaaa aatgattgga atgttccact atttacttcc cttaaaccaa
      181 attccccaca actttcatgc gcaacctggg cgcattagcc agatgatgca ccaatgggat
      241 ttcttccact acttcaaccg agtcagtcac tgtaccggcc aaggttactt attctctcgc
      301 ttttgctcgc cattttgcag cgcttcatcc cgcttgattt gggaaataga ttcgccgatt
      361 gcgttggcaa ctaggtcgat tttatcgcgg aaaatttgtg caacaacaga ggtttcgtct
      421 ggaataatta cactaccgaa ctgtttttca ttttatcaat cgcatcttcg gtcatttcag
      481 taatttttta taagctttct cagcaaaatt ggaattgcta gggaaaacat ggaaaacgtt
      541 tgttcgctaa tatataatta aaaaaagagg tgaatatgat gaaaataaca gacccgctct
      601 acggaacatt tgaaatagaa cctgttttgg ctgaactaat ccagagccca ttggtttcac
      661 ggctagcata cgtgcatcaa ggtggctcga gttatttagt aaatccgctt tgggacctta
      721 gccggcttga tcattcgatt ggtgtgatgc tttttattag gaagttcggt ggctctttgg
      781 aggagcaaat tgctggctta ctgcacgacg tatcgcacac tgctttttcg catgtggtgg
      841 attatgcgct tgattttgaa gaggaagatt atcatgagca gatttttgag gactttgtaa
      901 aaacttcgac gattcctgcc attttagaga agtatggtta ttcttttgaa gggatttttg
      961 atgatatttc gaagtggaaa attttggagc aagaagcccc ggagctttgt gccgaccgga
     1021 ttgattacac gctgcaagat ttgtatcgcc ataggaaaat tagtttggct gaggtggaag
     1081 aatttttgca ggctttagta atggtggatg ggcggcttta tttggcaaat atcgctcttg
     1141 cagaatggtt tgttgcgcaa tattattcgg aagtgattga ttatttttat gatccgctga
     1201 atgtttatag ttatgagatt ttggctgaag caatgcgcat tgcgtttcag caggagacga
     1261 ttacaaccgc ggatcttcgg ttgactgata ctgaattgtt agctaaattg aatgcgaatt
     1321 cggatgctcg ggagaagatt caattgctcg cgagtgccca tttggaagaa aatgaggcgg
     1381 actttactta tcatcataag aagaaaatgc gtttgattaa tccgtctatt ttagtggatg
     1441 ggcggcttat tccggcggat gagctttcag aaaaagtacg taaaatgaat gattgggcat
     1501 ctgagagaag taagcacggc atctacataa aagcaaccaa aaaaagtaag cagtagtgac
     1561 actgcttact tgagaggttt gagttaacaa tactcctatt tagtttggaa catccatcta
     1621 ttcatatatt tacatccgtt agactaatac aataattaaa cttaatagaa ctactaacac
     1681 gccttcaaat aacatagtgc tccaaagata ttcttttttc ttcacattta ctatacctgt
     1741 cgctaagaag cagattaaaa gaatgatgtg aagccaaatt ggaaaagcaa tgccagtatt
     1801 attactaacc atagaaatac tcatgtaaat gcatactatt gtccaaacga ttaatgtact
     1861 tgttaaaatt attcttttca ctatactatt actccttaat atgctttgga attaaagaac
     1921 caatttccta cattttttag ttgttaatct attttttgcc tttaagtgta cctattgcac
     1981 gtacatcctg atatttaaaa gcatatattt tcttaccata gcttgttgga actaatcctg
     2041 ttatgcgata ctgcttactt gatagtctaa agttaattta cacagattaa acacttttat
     2101 ttgaatatac gagttcactt tttgtatttc ttattaaatt cattgtgtac gtttgcacat
     2161 tttatacaaa catatactct tatttataat atgtcttttt tatcattttt atagttatag
     2221 gttaattttt actgtttgtg attatatttc cttatagca
//
LOCUS       DABQVC010000270         2249 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.272,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000270 DABQVC010000000
VERSION     DABQVC010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.272"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..239
                     /locus_tag="IBJ56_002760"
     CDS             <1..239
                     /locus_tag="IBJ56_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="terminase"
                     /protein_id="HAM3418996.1"
                     /translation="NAYLYYWDMEQNLLRDINERGFYVEYDNGGGQKGTRKNDSALLL
                     QKYTKQAMDILQFLSLKPPSEVKNTGSELHDPAL"
     gene            223..1875
                     /locus_tag="IBJ56_002761"
     CDS             223..1875
                     /locus_tag="IBJ56_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HAM3418997.1"
                     /translation="MTQLSNVYKWHPAISEWMRMVENDEVENCKEQKLLMKYVRGRLE
                     QKNVIIDHDTLDTAIATAERYFYKLFPFQKFIYAFVFAVFEIDEDGDKQLMFNDYFIY
                     AGRGFGKNGLLSCMIFECTTKNHGVDHYNIDIVATSEDQAKTSFEDIYNMLEENKDTM
                     KNVYRWNLVAIQHRKNGSTIKYKTSNARTKDGSRPGAVAFDEEHAYEDYSNYAVHTSG
                     LGKKERSRRFHLTTDGYVRGSVLDDRKVLAQQVLNGEKPNSKMFPFICKLDSPDEVQN
                     KTKWAKANPMILYYKPLRIEIDQHWDDAQSSSEIMVEFMTKRMNCPTQDPTTVAVKWD
                     DIKATNQPMPSLKMAPAIGGIDFADVRDFCAVGLLFKKEGKYIFKHHTFICAESLKIT
                     KFKFPIHEAVEKGLATIIHDNYIDEDYPLQWFLEQAKEHRIINIATDSFRYKSLKEAF
                     TSAGAPLIQVRSGPYSHNRLSSMVDKLFASHKIIFGDDMLMRWYCNNVAIKFDARGEK
                     TYIKIEPKTRKTDGFFALLHTLMLDEELPETREIKLYDVTTY"
     gene            1889..>2249
                     /locus_tag="IBJ56_002762"
     CDS             1889..>2249
                     /locus_tag="IBJ56_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HAM3418998.1"
                     /translation="MGFKSWVSGFFNEEQRTLNLTDTVWCSIPSEKLKELSIKKWAID
                     SCANKIANTLSCAEVLTYEKGEEVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNE
                     ALIFMQDEYIYVADSFTK"
BASE COUNT          825 a          314 c          449 g          661 t
ORIGIN      
        1 taaatgctta tctgtattat tgggatatgg aacagaatct attaagagat attaatgagc
       61 gtggttttta tgttgaatat gacaacggtg gcggtcagaa aggcactcgt aaaaatgata
      121 gtgcattatt actacaaaaa tacactaagc aagcgatgga tattttacaa ttcctatctt
      181 taaaaccacc ttctgaagtt aaaaatacag gaagtgaact acatgaccca gctctctaat
      241 gtatataaat ggcatccggc aatatcagag tggatgcgaa tggttgaaaa tgatgaagtg
      301 gaaaattgta aagaacaaaa attattgatg aaatatgtta gaggtaggtt agaacaaaaa
      361 aatgtaatca ttgatcatga tactttagac accgctattg ctacggcaga gcggtatttt
      421 tataaacttt ttccgttcca aaaattcata tatgcatttg tatttgctgt atttgaaata
      481 gatgaagatg gcgataagca attaatgttt aatgattatt ttatttatgc tggtagaggt
      541 ttcggtaaaa atggtttatt aagttgcatg atttttgaat gtacaactaa aaatcatgga
      601 gtggaccatt acaatatcga tattgttgcg acatcggaag accaagcgaa aacaagtttt
      661 gaagatattt ataatatgtt agaagaaaat aaagacacga tgaaaaacgt ctatcgctgg
      721 aatttagttg caatacaaca tcgaaaaaat ggatcaacga tcaaatataa aacatcaaat
      781 gcaagaacaa aagatggttc aagacctggt gcagttgcct ttgatgaaga acacgcatat
      841 gaagattatt caaattatgc agtacacact tctggattag gtaaaaaaga acggtcacgt
      901 agattccatt taacgaccga tggttatgtt cgtggaagtg ttttagatga cagaaaagta
      961 ttagcacaac aagtgttaaa tggtgaaaag ccaaactcaa aaatgttccc tttcatttgc
     1021 aagttggata gtccggacga agttcaaaat aaaacaaaat gggcaaaagc aaatcctatg
     1081 attttatact acaaaccatt gcgaatagaa attgaccaac attgggatga tgcgcaatca
     1141 tcttctgaaa ttatggttga gtttatgact aaaagaatga actgtccaac tcaagatcca
     1201 accactgtag cagtaaaatg ggatgatatt aaagcaacaa atcaacctat gccatcgtta
     1261 aaaatggctc cagcgattgg aggtatcgat tttgcggatg ttagagactt ttgtgcggta
     1321 gggttgttat ttaaaaaaga aggtaagtat atctttaaac atcatacatt catttgcgct
     1381 gagtcattga aaatcacgaa atttaaattt ccgattcatg aagcagtgga aaaaggactg
     1441 gcaactatca tacatgataa ttatattgat gaagattatc cacttcaatg gtttttagaa
     1501 caagcgaagg aacaccgcat aataaatatt gcaacagata gcttcagata taaatccttg
     1561 aaagaagcat ttacgagtgc gggtgcgcct ctgattcaag tccgttctgg tccatattcg
     1621 cataacagat tatcaagcat ggtagataaa ctatttgcct cgcataaaat aatttttggc
     1681 gatgatatgc tgatgcgctg gtactgtaac aatgtagcta ttaagtttga tgcgcgtggt
     1741 gaaaaaacat atataaaaat tgaaccgaag acacgtaaaa cggatggttt ttttgctttg
     1801 ctgcatacac taatgcttga tgaagaattg ccagagacac gagaaataaa actgtatgat
     1861 gtgactacgt actaggaggt gataaatatt gggattcaaa agttgggtga gtggattttt
     1921 taatgaagaa caaagaacat tgaatttaac ggacacggta tggtgttcta ttccttctga
     1981 gaaactaaaa gaattgtcta taaagaaatg ggcaattgat tcttgtgcta ataaaattgc
     2041 caacactcta tcttgtgcag aggtactcac ctatgaaaaa ggtgaagaag tccgtaaaaa
     2101 aaattggtat atgtttaatg ttgaagcaaa tcaaaatcag aatgcaactg agttttggaa
     2161 gaaagcaata tacaaacttg tatatgataa tgaagctttg atatttatgc aagatgaata
     2221 tatttatgta gctgatagtt ttactaaaa
//
LOCUS       DABQVC010000271         2188 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.273,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000271 DABQVC010000000
VERSION     DABQVC010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.273"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(32..403)
                     /locus_tag="IBJ56_002763"
     CDS             complement(32..403)
                     /locus_tag="IBJ56_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014600481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3418999.1"
                     /translation="MDNLVAVNKIDSLVEEKVELLINNQKVVAFNASPQELEIGEEYK
                     AEIDIFTNDFLEITEQKNEQIKRIEHLNNFSYMLWGELLEDNVLDVGFFITSDLLEDY
                     EHLVGHYISFEVDRLQIYCES"
     gene            complement(625..907)
                     /locus_tag="IBJ56_002764"
                     /pseudo
     CDS             complement(625..907)
                     /locus_tag="IBJ56_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463865.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 family protein"
     gene            1037..1504
                     /locus_tag="IBJ56_002765"
     CDS             1037..1504
                     /locus_tag="IBJ56_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HAM3419000.1"
                     /translation="MNNLTFRFIAAIYIDVPPTISDYSDNAMLAADYCIIVLQTQELS
                     LDGAQTYIAYMQYLADTYNSELDVLGLIPMMLRKGGRVDQKVLDQAKEMYGSNVLNTI
                     VKYQERLKVYDVEGITVSYNVNGKVDMWDTRAHQVFIDVLDELDEHEIMLQNI"
     gene            1521..1988
                     /locus_tag="IBJ56_002766"
     CDS             1521..1988
                     /locus_tag="IBJ56_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419001.1"
                     /translation="MANDEKLSPIISRKRKSTLNSKKVDIAGVGDFGRDTTPVSSVIS
                     QPNSASKDNAIPAEYQSTIPEETVNVVRQAVPNEVDFRRKATKTQKMSSDVILKLNTL
                     KPYIKDLEEMGSDGNPSINDIVNMLLDNYINTKLSTRQLQGYKAVYQNLFEHL"
BASE COUNT          707 a          385 c          339 g          757 t
ORIGIN      
        1 taaatctatt gattaaagaa atcaccaaat tttatgattc gcagtatatc tgcaacctgt
       61 ctacttcaaa agaaatataa tgccctacta aatgttcata gtcttccaat aagtcacttg
      121 taatgaaaaa acctacatcc aatacgttat cctctaataa ctccccccaa agcatgtaac
      181 taaaattgtt aaggtgctca attcttttta tttgttcatt tttctgttct gtaatttcta
      241 aaaaatcatt agtaaatata tctatttctg ctttatattc ttcgcctatc tctaattctt
      301 gaggcgaggc attaaaagca actacttttt gattattaat caaaagttct accttctctt
      361 caacaagaga atcaatttta tttactgcta ctaaattatc cataaattcc tcctacttaa
      421 ttggattgat aacagggata ttttcccctt tattcatcat tttccaaaac gttttaccac
      481 tttcaacatg ataagtggta atttcaccta aattattagt cccaattgtt ttcttctcgt
      541 ttggtcgaca tccgtttctg ccattatttt cgctttttta atttgttgga gttgttgttc
      601 tagttggcgg tgtgcgctat ccaattaacg cacctccaac tgattgattt tttgtcccat
      661 caattggtct tgtttagcat aagcaatacc cattttcttt aatcggcgca tcttgcttgg
      721 tcacgtgttg aaaatcttcc acgacatcca ccaactcaat caaagccgag cgcaattgat
      781 caattgaatt ggctctggaa taagccatgt tcccgttttt taatggtaag tatcttcccg
      841 aacttttact tgccaatttg gttgcgtgtt gttggaaggt tacttcgttg acttttattt
      901 ctctcacatt cttgcttcct ctctgtctaa tgggatttag tttcatactc tcccattata
      961 acatcgcttg aacacggctt ttgtgagcgt tttgtgaagc tattcgctaa aaaacggctt
     1021 tacaatggct ttttaagtga ataatttaac atttcgtttt attgctgcta tttatattga
     1081 tgtgccacca actatctctg attactctga taatgccatg ttagccgctg attattgtat
     1141 tatcgtatta caaacacagg aattatccct tgacggagct caaacataca tagcatacat
     1201 gcaatatctt gcagatacct ataattcaga attagatgtt cttggattaa tacctatgat
     1261 gcttagaaaa ggtggtcgag ttgaccagaa agttttggat caagcaaaag aaatgtatgg
     1321 tagtaatgta ttaaatacaa ttgttaaata tcaagaacgt cttaaagtct atgatgttga
     1381 aggtataact gttagttata atgttaatgg taaggtagat atgtgggaca ctagagctca
     1441 ccaagtgttt attgatgtat tagatgaatt agacgagcat gaaataatgc ttcaaaatat
     1501 ttgaaaaggg gtgatgttat atggctaatg atgaaaaatt atctccaata atttctagaa
     1561 aaagaaaatc tacattaaat tcaaaaaaag tagatattgc cggggtaggg gacttcggta
     1621 gagacactac accagtatcg tctgttatca gtcaacctaa cagcgcaagt aaagataatg
     1681 cgattcctgc tgaatatcaa agtactatcc ctgaagaaac tgtcaacgtt gtccgacagg
     1741 cagtacctaa tgaagttgat tttcgcagaa aagcaactaa aacacaaaag atgtcttcag
     1801 acgttatact taaattaaat actctaaaac catatattaa agatttagaa gagatgggga
     1861 gtgatggtaa tccatctatt aatgacatag taaatatgtt gttagataat tatatcaata
     1921 caaagttatc tacacgtcaa cttcaaggat acaaggcagt ttatcaaaac ttatttgaac
     1981 atctttaaat tataaaaatt ctgaatttat tattttataa ccttaaaaac agcctaaata
     2041 ctcatcttaa aagcacagga attttttaac gaaaaaaatc acagggagac agagtatact
     2101 ggtatactct gtctccctgt gattaggtga ttaatatcta tcacaattac aaatcaactt
     2161 ccgaccataa aagatatgaa tatatttt
//
LOCUS       DABQVC010000272         2166 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.274,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000272 DABQVC010000000
VERSION     DABQVC010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.274"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..383
                     /locus_tag="IBJ56_002767"
     CDS             <1..383
                     /locus_tag="IBJ56_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419002.1"
                     /translation="NPVRQMALLEVALGISTYRGSRKKTFIFIGSFFVIAFILGYLTY
                     FFGINRNITATIIVGIILTLFLIAGTIIMFVIAIRQASSLRTDAWAKILTTIDPQFPV
                     EFLNEKKWQKAFLAQMESMNEQLA"
     gene            complement(516..1706)
                     /locus_tag="IBJ56_002768"
     CDS             complement(516..1706)
                     /locus_tag="IBJ56_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HAM3419003.1"
                     /translation="MEKNIETKKINLALLVCLVGFPQISETIYTPSLTEIATSYGVSL
                     NLAQMTLSIYFLAFAVGVFFWGVSSDFLGRRKAMNFGIFIYILGCFVCLFSNNITMLF
                     IGRFVQAFGASTGSVTTQTILRDNYHGNDRHHLFAKISAALAFSPAIGPLIGGFIGQY
                     YGFRVVFLFLVVMGMILLFWSLKRLPETKTANATPFSVQKMVVIGKKMIFDRYTIAFG
                     VLIGIFNGILFSYYSEAPTIFIERFHFNQSQYGFMGCAVATATILGAWLSNWRLKQNS
                     PHKIIKEGILLALIGTLFLSMVALFPLTIQVIFYIFFISIILVGIGMSLPNCLSLALV
                     KFQEVAGTAGAFLSLGYYVIVSLCTFFIGVLHSGSILVFPAFCLVLLLIALLCIKIAA
                     RNNP"
BASE COUNT          748 a          368 c          400 g          650 t
ORIGIN      
        1 ataatccggt tcgtcaaatg gcattgctgg aagtagcgct aggtatttct acttatagag
       61 gtagccgtaa gaaaaccttt atttttattg gtagtttttt tgtaatcgca tttattttag
      121 gttatctaac gtactttttt ggaataaacc gaaatatcac agctacaatc attgtaggta
      181 ttattttaac tttattttta attgccggaa caataataat gtttgtaata gcgattcgcc
      241 aagcatcttc attacgtaca gacgcatggg ctaaaatctt aaccacaatt gaccctcagt
      301 ttcccgttga attcctaaat gagaagaaat ggcaaaaagc cttccttgct caaatggaaa
      361 gtatgaacga acaattagca taatcagaga agtattagac ttttagaggt ttaatacttt
      421 ttttattccc cgggaaataa atagtatttt atattgtgat aacatttaaa ataaaactgg
      481 caccgtttca agatagaaac ggtgccagtt ttttgctaag ggttatttct agcagctatt
      541 tttatacaga gcaaggcaat tagaagtaat actaggcaga atgcgggaaa tacaagtatt
      601 gatcctgaat gcaaaacgcc aatgaagaaa gtacaaagac tgacaattac ataatatcct
      661 aagcttaaaa aggcgccagc tgtaccggca acttcttgaa atttcactag tgctagactt
      721 aaacaatttg gtaaagacat gccaattcct actaagataa tagaaatgaa gaagatgtag
      781 aatataactt ggatagtaag cgggaatagg gcaaccatgc taagaaatag agtgccaata
      841 agagctagca aaattccttc tttaatgatt ttatgaggtg aattctgctt taagcgccag
      901 ttcgatagcc aagctcctaa aatagttgcc gtagccactg cgcaccccat gaagccatac
      961 tgactctgat taaaatgaaa cctctcaata aaaatagtag gagcttcaga gtagtaacta
     1021 aacaatattc cattaaaaat accaattagc actccaaaag caattgtata gcggtcaaaa
     1081 atcatttttt taccaattac taccattttc tgcacactga atggggtggc gttcgctgtt
     1141 tttgtttctg gtagtcgttt taaactccag aacagcaata tcattcccat aactactaaa
     1201 aataaaaaaa ccacgcgaaa gccgtaatat tgtccgataa atccaccaat taatggccca
     1261 attgccggtg aaaatgccaa agcggctgag atttttgcaa ataaatggtg gcgatcatta
     1321 ccgtggtagt tgtcacgcaa aatggtctgt gttgtaacag aacccgtact tgcgccaaat
     1381 gcttgaacaa agcgtccgat aaaaagcatt gtaatattat ttgaaaaaag gcagacgaag
     1441 caaccaagaa tatagataaa tatcccaaag ttcattgctt ttcgtcgacc taaaaaatcg
     1501 gaactaacgc cccaaaagaa gacaccaact gcaaaagcaa gaaagtagat gcttaaagtc
     1561 atttgagcca aatttaatga gacgccgtag ctcgtagcaa tctccgttaa agaaggcgta
     1621 taaatagttt cgctaatttg tggaaacccc acaaggcaca caagtaatgc taaatttatt
     1681 ttctttgttt cgatgttttt ttccataaaa ttctctcctg aataagttat ttatctggga
     1741 aaaaaacatc tttcacaggg aaatggtggg accatgattt taatacgctc gtaaaaaagc
     1801 atgcagtcac ccctttctat tttaaacgga gaaggttccg ttttttcgtt aaagtttatt
     1861 gtagtataaa tgggtggaaa gataaagtgt tggtggacga ttgaataaat atacactgat
     1921 atttacttga attcagcatt taagtgaaca agttcaaata tatgtggtta agttaagctg
     1981 gtatatgaaa cttttgtgac tatcaagctt gaggctgaat agaaacatgt ataatgagct
     2041 gtctagcgct tttttattct gaaaatggag tttttgtaac acgatatgtg tagaaaatgc
     2101 actaagacac tataacttta gctatttagg ataagaatgg agtcgttcat tacattttgg
     2161 ttatac
//
LOCUS       DABQVC010000273         2153 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.275,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000273 DABQVC010000000
VERSION     DABQVC010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.275"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            166..915
                     /locus_tag="IBJ56_002769"
     CDS             166..915
                     /locus_tag="IBJ56_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HAM3419004.1"
                     /translation="MTAHKMLDEKFYSKSLGEELDLIICLPPDFSPLYKYPLFIVQDG
                     KDYFQFGKLARHSEELALNEQIQKAIFIGIPYKTVMDRREKYHPDGKQNDAYIRFLAF
                     ELVPYLEERFPSFQMPTSRFLMGDSLGASVSLKAALLFPFTFGNVILHSPYVDDTILT
                     LAEKVDPSKVKIFHIIGDRETAVETSGNEVLDFLSPNKSLEQILSTRGFDYYFHVFNG
                     DHRWKYWQPFIKDSLQFMLPVNTFDLESMRA"
     gene            933..1367
                     /locus_tag="IBJ56_002770"
     CDS             933..1367
                     /locus_tag="IBJ56_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3419005.1"
                     /translation="MTVKKVTDDIGKQAALKIRNDVFVVEQHVDPALEWDEFDEIDSV
                     VMFVDYAEDGTPLATGRFREKDGYGKVERICTQKIARGTGSGRRIMEAIESEAKSRGL
                     TTLKLGAQVTAIPFYEKLGYETCSGLFLDAEIEHKEMKKTLT"
     gene            complement(1412..2086)
                     /gene="rpiA"
                     /locus_tag="IBJ56_002771"
     CDS             complement(1412..2086)
                     /gene="rpiA"
                     /locus_tag="IBJ56_002771"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HAM3419006.1"
                     /translation="MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG
                     LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGADEIDTDFQGIKGGGGALLR
                     EKMVASASLKNIWVVSEEKLVRNLGKFPLPIEVIPFGWKQIERTLEKEHIQTILRRQS
                     SGEIYVTNNGNYILDIVNQTFRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAKANGE
                     IELIKK"
BASE COUNT          676 a          437 c          342 g          698 t
ORIGIN      
        1 gcatattaaa tagcattatt gcagtgatgt ctcgtgaaaa agaaattttt ttcaaataaa
       61 taggcaaaat gttctttctt ttaacgtaat tcatgctaaa atagagtaac ttttcaaaaa
      121 acaatcccct atgaaggaat gatttcaaga aaggagagaa tgaaaatgac agctcacaaa
      181 atgttagatg agaaatttta tagtaaatcg ctaggagagg aacttgattt aattatctgc
      241 ttaccacctg atttttctcc actatacaaa tatccacttt tcattgtaca agatggtaaa
      301 gattattttc agtttggcaa acttgcgcgt cactccgaag aattagcgct aaatgagcag
      361 attcaaaaag ccattttcat tggtatccca tacaaaactg ttatggatcg tcgcgaaaaa
      421 tatcatccgg acggtaaaca aaacgatgca tatatcagat ttttagcatt tgaactcgtt
      481 ccttatcttg aagaacgctt tccttctttc caaatgccta ctagtagatt cctgatggga
      541 gattcactcg gggcatccgt ttctttaaag gcagctcttc tttttccctt tacatttggt
      601 aatgtgattt tacattcccc ctatgtggat gacacaatcc ttacacttgc agaaaaagta
      661 gacccttcaa aagtgaaaat cttccatatt atcggtgacc gagaaactgc agtcgaaaca
      721 tccggaaatg aagtgctcga tttcctatca ccaaataaat ctttagagca aattttaagc
      781 actcgcggat ttgattatta tttccatgta tttaacggtg atcatcgctg gaaatactgg
      841 cagccattta tcaaagattc tttacaattt atgctaccag tgaatacatt tgatttagaa
      901 agcatgcgcg cataagaaag gacggaaaca acttgaccgt aaagaaagta acagatgata
      961 ttggcaaaca agccgcactt aaaattagaa atgatgtttt tgtcgttgag caacatgttg
     1021 atccagcatt agaatgggat gaattcgatg aaatagattc tgttgtaatg tttgttgatt
     1081 atgcagaaga tggcacaccg cttgcaaccg gtagattccg cgaaaaggat ggttatggta
     1141 aagtcgaacg catctgtacc cagaaaatag cccgcggcac tgggagcggc cggagaatca
     1201 tggaagccat tgaatccgaa gctaagtctc gtggcttaac aaccttaaaa ttaggagccc
     1261 aagtaactgc tattcccttc tatgaaaaat tgggatacga aacttgctcg ggattgttcc
     1321 ttgatgctga aattgaacat aaagaaatga aaaaaacatt aacataggaa atttaataaa
     1381 aatagttatt tcttttatat agaagaaata actatttttt tattagctct atttcgccat
     1441 ttgccttcgc acaaacaatt atatccacat aatgaagaaa taatccatgc tccacaatcc
     1501 ctggaatttg cgctaatttt tcttgccaca tttctgcatc cctaaaagtt tgatttacta
     1561 tatccaaaat atagttcccg ttatttgtca catagatttc tcctgaagat tgtctccgta
     1621 aaattgtttg aatatgctct ttttcaagtg ttctctcaat ttgcttccaa ccaaaaggta
     1681 ttacttctat aggcaaagga aacttcccta agtttcttac aagcttctcc tcactgacaa
     1741 cccaaatgtt tttcaaactc gcacttgcta ccattttttc acgtaatagt gctcctcctc
     1801 caccttttat tccttgaaaa tccgtatcaa tttcatcagc accatcaata gtaatatcta
     1861 tttccgctac gtcatttagc gatttcaaag gtattcctaa attttgtgct tgtttgcttg
     1921 tttcttcaga agttgccacc cctgtaatat gcaaaccatt atttaccatt tctccaagct
     1981 tttcaatcgt gtaatagact gtactgcccg ttccaaggcc cacaaccatt ccatctttaa
     2041 tccactcaca agccttttct cctgctatct tcttttgatt aatcatattc caacctcttt
     2101 tctagcatta aaacattact atatctattg tttcattata ctcgtaccta ctt
//
LOCUS       DABQVC010000274         2144 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.276,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000274 DABQVC010000000
VERSION     DABQVC010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.276"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..182)
                     /locus_tag="IBJ56_002772"
     CDS             complement(<1..182)
                     /locus_tag="IBJ56_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419007.1"
                     /translation="MKRSWPDFAAFLLTILTVTWIILTWGLHISDIVPGGEKGVWYKL
                     IPLFLGIISTISVFFV"
     gene            complement(268..1008)
                     /locus_tag="IBJ56_002773"
     CDS             complement(268..1008)
                     /locus_tag="IBJ56_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HAM3419008.1"
                     /translation="MDIITYFLIALSTSVVGSFLGIGGGVILLPILLLMGVSQGTAAF
                     SSALTVFTMAIFTCSIYYKRKQGNVGLALKIAVTSIPTTFLGAMVNQMLPEAVYRFLY
                     GALIVVLLGIMIWKKKRHNEKPHFLSEYRIIPYVFGVIIGFLAGLFGIGGGPIVIPIL
                     LLIFMLNQKTASATSSYVTLLTSLASIGSYAIIGGSDFSIGIYMIPGAIIGALIGTRL
                     NKLLDEKWIAILFNVLLIALFALNLIKI"
     gene            complement(1105..1497)
                     /locus_tag="IBJ56_002774"
     CDS             complement(1105..1497)
                     /locus_tag="IBJ56_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1398 domain-containing protein"
                     /protein_id="HAM3419009.1"
                     /translation="MINEQTILQAATSEKNAGDFPKVVQSFKELGVTKYQFLVEKGIY
                     VFWDEMDNQVESKLNGVSMPISEEISRDRLKDAIKQAQAGKIDFEIFIKLAGLAGVRL
                     WEADLSAMKVTYIDNTGNDLIVEPIPSI"
     gene            complement(1553..2008)
                     /locus_tag="IBJ56_002775"
     CDS             complement(1553..2008)
                     /locus_tag="IBJ56_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419010.1"
                     /translation="MDGEKETSKLLHELKKATNLRQVLDENEAEFKSSEMVTYLKELL
                     AEKKLTKASVIRAARLHETYGYQIFSGVRRPSRDRTIALSFGFKLTGLEASRLLKYTE
                     YPPLYAKNRRDAIIIFALDHGYTLDQTNDSLYDLEEALIETYKEEKPLI"
BASE COUNT          682 a          439 c          310 g          713 t
ORIGIN      
        1 ttcacaaaaa agacacttat tgttgaaatt attcctaaaa agagtggaat taatttatac
       61 caaacgcctt tttctcctcc tggtacaatg tcagaaatat gtaatcccca tgttaatatt
      121 atccaagtta cagttaggat tgtcagtaaa aatgcagcaa aatctggcca acttcttttc
      181 atcttaaacc ctcctactct ctctaagctt aacataaaac aagccatgac aacaaaaaaa
      241 caagctacat tcatagcttg tccgaggtta aatcttaatt aaatttaaag caaaaagggc
      301 gataagtaaa acattgaata gaatcgcaat ccatttttca tccaggagtt tatttaatct
      361 tgtgccaatt agcgcaccga tgatggcccc tggtatcatg taaataccaa tcgaaaagtc
      421 acttccacca atgattgcat aggaaccgat acttgcaagg gacgtcagta atgtcacata
      481 actggatgtc gctgatgctg ttttttgatt caacatgaaa attaacagca aaattggtat
      541 aacgattggc ccgccaccaa taccaaataa gccagctaaa aaaccgataa ttacaccgaa
      601 tacatatgga attatccgat attcacttaa aaaatgtggt ttttcattat gtcgtttctt
      661 tttccaaatc attatcccta gtaaaacaac gattaatgct ccatacaaaa agcgatagac
      721 tgcttcaggc aacatttgat tcaccattgc gccaagaaaa gtcgttggaa tactagttac
      781 ggcaattttc agtgccaagc ctacattccc ttgctttctc ttgtaataaa tactacaagt
      841 gaaaatcgcc atcgtgaaca cagtaagagc cgaactaaat gctgctgttc cttgagaaac
      901 acccattaag agtagaattg gcaaaagaat aactccgcca cctattccta aaaaactccc
      961 taccacactt gtacttagtg caattagaaa gtacgtaatt atatccatta tactttacct
     1021 ctcttctttc aactgtttca gcataacata tttccaaaat ttaaaagtac taaaaaaaga
     1081 caataagtta ttgtcttttg cattttaaat actcggaatc ggttccacga tcaaatcatt
     1141 tcccgtatta tctatatagg ttactttcat tgcagataaa tcagcttccc acagtctgac
     1201 acctgctagc ccagctagtt taataaatat ttcaaaatct atttttcccg cttgtgcttg
     1261 tttaattgca tctttcagtc tgtcgcgtga aatttcttcg gagattggca tagaaactcc
     1321 atttaacttg gattctactt gattatccat ttcatcccaa aatacataaa tacctttttc
     1381 gactaaaaat tgatatttag ttacgcctaa ttctttaaaa ctttgaacta ctttaggaaa
     1441 atctccggcg tttttttcac ttgttgctgc ttgtaaaatt gtttgttcat taatcataac
     1501 tagtctccaa tcatttaggt ctccctaaat tatacacgat ttctagttaa agctaaataa
     1561 gtggtttttc ttctttatat gtttcgatta atgcttcctc taaatcatag agtgaatcat
     1621 tcgtttggtc tagcgtataa ccatgatcta acgcaaaaat aataatcgca tcccgccgat
     1681 tttttgcata aagaggtgga tattctgtat attttaataa tctacttgct tctaaaccag
     1741 ttaatttaaa tccaaaagac agagcgatcg tccggtcgcg tgacggtctt ctaacgccac
     1801 tgaaaatttg gtatccatat gtttcatgga gtctcgccgc acgaatgacg cttgcttttg
     1861 ttaatttttt ctctgctaat aattctttta aataggtaac catttcgctt gatttaaatt
     1921 ccgcctcgtt ttcatctaat acttggcgta aattggtcgc tttttttaat tcatgaagta
     1981 acttacttgt ctctttttcc ccatccataa ggcacacccc cgactgtttt tttcattata
     2041 gcacgaaata tgtacccgac tactatgctt catgctataa ttttactata aagtatagaa
     2101 ggggttttag ataaatggga gaaatgacac tcgcttttat agaa
//
LOCUS       DABQVC010000275         2124 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.277,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000275 DABQVC010000000
VERSION     DABQVC010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.277"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..325
                     /locus_tag="IBJ56_002776"
     CDS             <1..325
                     /locus_tag="IBJ56_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419011.1"
                     /translation="KARFIEAYEKVKELDYQNNYYYKKPKSSPNRKQKAQIYIEHGLY
                     KADIYIVIFNKEQKIIRKEFILSDLPNPFVFSAHLGNLKWIDNDRLVLAHKQRKDILY
                     KVDMI"
     gene            825..1412
                     /locus_tag="IBJ56_002777"
     CDS             825..1412
                     /locus_tag="IBJ56_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419012.1"
                     /translation="MINLEWKELDQLEIEEKVQEVLDYSYNTWMSDKKNIRYFVRAFY
                     IKWDMIAYMYGMEENETEDDKLKSMFDFGISELRNITEVDWIMGYCMLINPIFFEEND
                     NYLELEEKGQEMLRNVAINNPDDVFLTSFGIPEKDYLKWKRANREQLIQYGEDNFNFD
                     SEFSRYFKHIINCRADEEVEKESFLKKIVRKWKQR"
     gene            1437..2124
                     /locus_tag="IBJ56_002778"
                     /pseudo
     CDS             1437..2124
                     /locus_tag="IBJ56_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681098.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
BASE COUNT          780 a          266 c          416 g          662 t
ORIGIN      
        1 taaggctaga tttattgagg catatgaaaa ggtaaaagaa ttagactatc aaaataatta
       61 ctactataaa aaaccaaaat ccagcccaaa tagaaaacaa aaagcacaaa tttatattga
      121 gcatggctta tacaaagctg acatatatat cgttattttt aacaaggaac agaaaatcat
      181 aagaaaagaa tttatcctca gtgatttacc aaatccgttt gtattttccg cacacctagg
      241 aaatttaaaa tggatagaca atgatcgttt agttctagct cataagcaaa gaaaagatat
      301 attatacaag gttgatatga tttaaaaaga gcggattgat taaattaaac agatagattg
      361 tttgcttaat ctccaaaaac ttaaattctt ctagaaaagt aacaaaagga ggtactttat
      421 atgttgacga ttttaaaaac tatcatttcg cttgaatttt tagctataac taccttatgt
      481 tttatatttt tcgataaata tagagggaag aaaaacaaat taataaggtt tatgccgtac
      541 ttatttactg tagtaggtgg tattatctta tctacgtttg ttttctttac agtgtgaatg
      601 agggggagcg ggcatgctag aatttttatc aagtgtgata gcggttttta caataacatt
      661 gctaatcgtc attgcttttt tatattttaa actatatgaa aataaaaaga ctttgtacac
      721 gttatgctca ctatattttt tatgtttact aatttttgtg tttacattaa taaaagattt
      781 tttgtatatt ccataacaat tactcataga aacgagagaa tcttatgata aacctagaat
      841 ggaaagaact agaccaactg gagatagaag aaaaggttca agaggtatta gattatagct
      901 ataatacctg gatgtctgat aagaagaata ttcgttattt tgtacgggcg ttttatatta
      961 aatgggatat gatagcctat atgtatggaa tggaagaaaa tgagacggaa gatgataagt
     1021 taaaaagtat gtttgatttt ggcattagcg agctgagaaa tattacagag gtcgactgga
     1081 taatgggtta ttgcatgcta attaacccaa tcttttttga agaaaatgat aattatttgg
     1141 aacttgagga gaaagggcag gaaatgcttc gtaatgtagc aataaataac ccggatgacg
     1201 tctttttgac ttcttttggt ataccggaaa aagattattt gaaatggaaa agagcgaaca
     1261 gagagcaact tattcagtat ggggaagata attttaactt tgactcggag ttttcgagat
     1321 attttaaaca tattataaat tgcagggcgg atgaagaggt ggaaaaagaa agctttctga
     1381 agaagattgt gcgcaagtgg aagcaacgat gagattccat ttggaggtgg gagtatatgc
     1441 taaaaaaaac gaaaaaaatt ctcaatgaaa ttaaaactat tatccagcaa aaaccttttg
     1501 attatgagaa ggcagaaaat ttgataagtg agttaaatct tgaagaggcc cccactagaa
     1561 ttggagaaca tcttactagc tagcataaat aatagcgatg agaatactcg aatatttgcc
     1621 tatgagtatt tatattattt tgatagcgaa gcagtttttc aagcagccct catagggaca
     1681 acagacgacg atgatttagt tcaaatgtgc tccatagaga ttttaggaaa tttggttaaa
     1741 gtagaaagtc tcccgtattt aaagaaggcg ttgggcgata acaaccctga tgtacgttgc
     1801 tttgctgctg aatcaatcgg ttttgtaggg actgacgaag cgaaagcgat actgcaagaa
     1861 cagttaaata gagaaacgga ttcttttgca aaagtaggta tttattatgc gctctatctt
     1921 cttggtcgag aagaaatgtt gccaaagctc ctttctctac tagacgataa ttatcatttg
     1981 acggtgatta gaagcttgga tgttctgaga gacgttgtta atcaaacaaa taaagaaaat
     2041 atattattaa atatcgaaaa acttttaaag agagatatcc caatttcagt aaaggaaaaa
     2101 gcggaagtgg ttttacaaga aatt
//
LOCUS       DABQVC010000276         2106 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.278,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000276 DABQVC010000000
VERSION     DABQVC010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.278"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..1209)
                     /locus_tag="IBJ56_002779"
     CDS             complement(<1..1209)
                     /locus_tag="IBJ56_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HAM3419013.1"
                     /translation="MTTRTRNLYILMLANLLMSASMTMIMPFLSLYIETFGDYSNAYV
                     QRWAGYIFGVTFLIAFIFSPIWGRIGDKHGYKGILILTSVGLSICIFLMGFAHSVTYL
                     LILRIFMGVVTGFIGVSNAFIARQTPRNEAGKILGTLQLGGVTGMLFGPLIGGAMADL
                     FGFKDTFTITGIAMMVAALIVAFGVKEIRTEEQKEAAKVVYSRRAVLKQIFTLRVLFT
                     VMVITALIQIANFSVQPLLALYVGDMTQSDNIAFLSGLAFSATGFGNLVMTRKWGQLG
                     DKYGYEKILNILLIMAAVFVIPQAFATNLWVFIFFRFLFGIAIGGMVPCTTAYIRLAA
                     PGVMQGEMLGYNQSARFLGNVIGPILGGTLAGFTGIPSVFLFMSFMFLVAFFILLYAL
                     HSDRKRHVNVD"
     gene            1441..2025
                     /locus_tag="IBJ56_002780"
     CDS             1441..2025
                     /locus_tag="IBJ56_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HAM3419014.1"
                     /translation="MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVT
                     HSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTEAFNLRGALSM
                     ANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEIIEAYKQGGTPWLDGRHTVFGH
                     VIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK"
BASE COUNT          725 a          468 c          384 g          529 t
ORIGIN      
        1 atccacgttc acatgccgtt tccggtcgga atgaagggca taaagcaaaa tgaaaaatgc
       61 cacgaggaac ataaaactca taaataagaa cacactcgga attccagtga aaccagcgag
      121 cgtcccaccg aggattggtc cgataacatt tcctaaaaag cgagcacttt gattatagcc
      181 aagcatttcg ccttgcataa caccaggcgc cgcaagccga atataagctg tcgtacatgg
      241 caccatacca ccaatcgcaa tcccgaataa aaagcggaag aagatgaaca cccaaagatt
      301 cgtcgcgaat gcctgtggaa taacaaaaac agccgccata atcaacaaga tattcagtat
      361 tttctcatac ccatatttgt ctccaagctg tccccatttt cgcgtcatca ccaagttccc
      421 gaatcccgtc gcagaaaacg ccagcccaga caagaaagca atattgtctg attgcgtcat
      481 atctcctaca taaagcgcaa gcaacggttg aacactaaag ttcgcaattt ggataagtgc
      541 tgtaataacc atcaccgtga atagaactcg tagcgtaaaa atttgtttta aaactgcacg
      601 acgagaataa acgactttgg cagcttcttt ttgttcttct gtacgaattt ccttgacacc
      661 aaaagcgaca attaaagccg caaccatcat cgcaattccg gtaattgtaa aggtatcttt
      721 aaagccaaat aaatccgcca tcgcgccgcc aatcaaggga ccaaacagca tcccagtcac
      781 gcctccgagt tgcaaagtac cgagaatttt tccagcttca ttacgaggag tttgccgtgc
      841 aataaaggca ttactaacgc caataaagcc agtcacaacc cccatgaaaa ttcgtaaaat
      901 cagtaagtaa gtgacagaat gcgcaaatcc catcagaaaa atacaaatcg ataaaccaac
      961 tgaagtcaga atcaaaatcc ctttataacc gtgcttatca ccaatacgtc cccaaatcgg
     1021 cgaaaagata aaggcaatta aaaatgttac gccaaaaata taaccggccc acctttgcac
     1081 gtaagcattg ctataatcac caaatgtttc aatgtaaaga gataaaaaag gcataatcat
     1141 tgtcatactg gctgacatca acaggtttgc cagcattaag atgtacaaat tccgtgttcg
     1201 agttgtcata aaagaatcat ctctattcgt attattgtta aaactgtcct tttcattata
     1261 gaataaaaga tagcgaatga aaaataaagt gaaggatgtg catttttggt taaaaaaatt
     1321 gtcatttggg tttcagctgt tatactagta ctgtatctga ttgctgtcgt tgttaatttg
     1381 cttattattt ggctacgtta gtaaacaata aatttaaaca aaagaaggag tttttacaat
     1441 atgacttacc cacaattatc aaaagaagtg gcacctaacg aaattgaagc agaaatgatt
     1501 acaaaccgag gaactatccg catcaaattg ttccctgaaa ttgcaccaaa aacagtagaa
     1561 aactttgtta cacattccaa aaacggctac tatgatggcc ttattttcca ccgtgttatt
     1621 cctgaattca tgatccaagg tggcgaccca gacggccgcg gtactggtgg cgaaagtatt
     1681 tggggcgaat cttttgaaga tgaattctct acagaagctt tcaatttacg cggagcttta
     1741 tccatggcaa acgctggtcc aaacacaaac ggcagtcaat tcttcatcgt tcaaaaacca
     1801 gatatgcctg ctgacatgct tggtcaaatg gaacaagctg gcttcccagt agaaattatc
     1861 gaagcttaca aacaaggcgg aacaccatgg ttagacggcc gccacacagt tttcggtcac
     1921 gtaatcgaag gcatggacgt agtagacgaa atcgccaacc taccaactgg catgcaagac
     1981 aaaccagtga atgatgttgt gattgagaag attaatatta aataatgaat gaagagcact
     2041 ttctatgaaa gtgctctttt tttattcacc accacaattt atctaaagcg atattaccat
     2101 tactat
//
LOCUS       DABQVC010000277         2100 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.279,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000277 DABQVC010000000
VERSION     DABQVC010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.279"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            322..876
                     /locus_tag="IBJ56_002781"
     CDS             322..876
                     /locus_tag="IBJ56_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate metabolism regulator"
                     /protein_id="HAM3419015.1"
                     /translation="MAITMYIDQPGASLNYETTHPHFKEHFKASFYLDGQDSYGPFGY
                     KDGLEVLRRLEEYFSDKSDQGLNLSSFPKYMMETVKKANYVPAKDDGVERLKQLLAEF
                     GSDVRASDRITVSAALAQIKITGYILPALRDAALESLHREIELNKIENIDAGYADSMF
                     YDLLTFTKDYTSVLPDMWCRHCTE"
     gene            complement(907..1380)
                     /locus_tag="IBJ56_002782"
     CDS             complement(907..1380)
                     /locus_tag="IBJ56_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HAM3419016.1"
                     /translation="MGAGKTTVGNILANLADLPYIDIDEVITSEQGMSVSDIFAKYGE
                     KEFRRLEHEKLKELATTKAVIATGGGIVLNPENREVLKNTYPVIYLETDPEVFMNRLK
                     GDTTRPLVQQKTAEEIRAIFEPRIAHYQDSADFIVNTDNRNQEEVARAILTMLDK"
     gene            1604..>2100
                     /locus_tag="IBJ56_002783"
     CDS             1604..>2100
                     /locus_tag="IBJ56_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419017.1"
                     /translation="MIENELEHAKKMEKIEFGVNRRLIFSSCLLWMAVGLLLYVVFSH
                     IKGVNGIEEMILLVFIGLCVLRPLFRLINIAPTVELTERGVAYRGDFKSWNEIKKTEL
                     KKPAMMLFSQGRLKIMTSINGREEVAWDIVAADVSISLEELEKLIQSMRSTYTNDETI
                     GMEIFV"
BASE COUNT          689 a          319 c          402 g          690 t
ORIGIN      
        1 gccataatgg gataaatggc ggtttttgct tttcgagtgt gtggttgact aataaattaa
       61 cagacgagat taataaaaac caagtccagt tttatttaac cacgaaataa ataaatggtc
      121 aaaagagcaa aaattaactt ttatgagaat agaaccaatt taattaacta attttatctt
      181 atatagttaa ttaaaacaca ataaaagcga aaatcatcct taaaattgtc atgaaattgt
      241 cacctttttt tcttctttca aaaaggtaga tagtctggta agatgaatgt atgagatttc
      301 acatgaatgg aggaaatgag aatggcaatt actatgtata ttgaccagcc tggtgcctcg
      361 ttaaattatg agacaacaca tccacatttc aaggaacatt ttaaagcgag tttttatttg
      421 gatggtcagg atagctatgg tccatttggg tataaagatg gacttgaagt acttcgacgt
      481 ttagaagaat attttagtga taaaagtgat caaggactca atttatcgtc ttttccaaaa
      541 tacatgatgg aaacagtgaa aaaagcaaac tatgttccag cgaaagacga tggtgtagaa
      601 cgattgaaac aacttttggc tgagtttggc agtgacgtac gtgcatctga tagaattact
      661 gtctcagcag ctttagctca aatcaaaatc acgggctata ttttacctgc tcttcgtgat
      721 gcggcgctgg aatcacttca tcgcgaaata gaattgaaca aaatagaaaa tattgatgca
      781 ggttatgcgg acagtatgtt ttatgactta ttaaccttta caaaagacta tacatctgtg
      841 ttaccagata tgtggtgcag acattgtaca gaataaaaaa acaacgctaa aattagcgtt
      901 gtttttttac ttatctaaca tggttaaaat agctcgagca acttcttctt gattacgatt
      961 atccgtatta acgataaagt ctgcagaatc ttgatagtga gcaattctag gttcaaaaat
     1021 agcgcgaatt tcttcggctg ttttttgttg tacaagcgga cgtgtagtgt cgccttttaa
     1081 gcgattcata aatacttcgg gatccgtttc taaataaata accggatatg tattttttaa
     1141 aacttctcta ttttcaggat tgagaacaat gccaccgcct gttgctataa cggctttggt
     1201 tgttgctaat tcttttaatt tttcatgttc tagacggcgg aattcttttt caccatattt
     1261 agcaaaaatg tccgatacac tcattccttg ttcgcttgta attacttcgt caatatcgat
     1321 gtacggtaag tcagctaagt ttgcgagtat atttccaacc gttgtttttc cagctcccat
     1381 gaagcctatt aagataactt gatcgatgat gttctcctcc tttattggat tattacattt
     1441 tactacttaa aagcattaaa gaaattatat cacaaatgcc aaaaaggtca actgaaagta
     1501 ggctgatttc tttaaaataa aaagctacat gaatgccttc ttcccattgt agtatatttt
     1561 tagtacaata gaaataatag agctgtaaaa ctggagggaa ataatgatag aaaatgagct
     1621 agaacatgca aagaaaatgg agaaaatcga atttggggtc aatcgacgtt tgattttttc
     1681 aagttgttta ctttggatgg ctgttggatt attactttat gttgttttta gtcatatcaa
     1741 aggtgtaaat ggcatagagg aaatgatttt actcgtattt atcggccttt gtgtgttacg
     1801 tccattgttt cggttaatta atatcgctcc caccgtagaa ttaacagaac gtggagttgc
     1861 ttatcgtggt gattttaaat catggaatga aattaaaaaa acagaactga aaaaaccagc
     1921 aatgatgctt ttttcgcaag gtagattaaa aattatgaca tcgataaatg ggcgggaaga
     1981 agtggcatgg gacatagttg ctgcggatgt ttctattagt ttggaggaac tagaaaaact
     2041 cattcagtcg atgcgttcca cttatacaaa tgatgaaact atcggtatgg aaatctttgt
//
LOCUS       DABQVC010000278         2087 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.280,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000278 DABQVC010000000
VERSION     DABQVC010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.280"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            207..2030
                     /locus_tag="IBJ56_002784"
     CDS             207..2030
                     /locus_tag="IBJ56_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HAM3419018.1"
                     /translation="MASPLKRLLIGRPLKTSEAGDQKLGKLKALAVLSSDALSSIAYG
                     TEQILLVLVTVSAAAMWYSLPIALCVLVLLFALNLSYKQIIYSYPHGGGAYIVSRENL
                     GNNAGLIAGGSLLVDYMLTVAVSVSSGTDAIVSAVPSLYPFAVPIAVLLVVGVTIINL
                     RGITESASLLAIPVYLFVFSIIALIFTGLFKVLTGMDASHETAAVGTHVQGVTIFLLL
                     RAFASGSASLTGIEAISNAVPLFKEPRPKNAAKTLTLMAGLLGFFFVGITVLAFVYGT
                     VPELKVTVLSQIAENVFGRNFMFYFIQATTALILVLAANTGFSAFPMLAFNLAKDKFM
                     PRMYLARGDRLGYSNGIITLAVGSILLIILFKGKTELLIPLYSVGVFIPFTLSQTGMI
                     VKWWKQRPKGWKKSLSANLLGASISFTVLLVLFLTRIESVWPVFVFMPIMIYVFHRTR
                     HHYRKVGPQLRIDETMDLPDFKGNAVIICVSDTTKVVEGALQYAKSIGDTVIAVHISI
                     DKKQEKEFVERWNRVHPEVRMANLFSPYRSISDPLMKFIDTAKQKADQDNYSLTVLIP
                     QFIPRKGWQNVLHNQTSLLIRTRLLMKRDVVVSTYPYHLKE"
BASE COUNT          640 a          344 c          406 g          697 t
ORIGIN      
        1 tgggtatgta tattgaaagg cgtgtgaaat aaatttctac tttttaaaga cgtaaaaaca
       61 agcattatga acaattattc acttgaaaga taattagtca gctaaaataa tacaaattag
      121 tattacaatc taaaatcagc tgtgctataa tgtgtctggt caacttgaag ttagctaaaa
      181 atcaaataaa aaaggtaggg aatacaatgg cttcgccgct aaaaagacta ttaatcggcc
      241 gccctctgaa aacatcagaa gctggagacc aaaaactggg gaaattaaaa gctttagcag
      301 ttctgtcatc agatgcactt tcttctattg cgtatggtac agaacagatc ttattggtac
      361 ttgtaactgt tagtgctgcc gctatgtggt attcattacc aattgcgctt tgtgtacttg
      421 ttcttttgtt tgctcttaat ctgtcttaca aacaaattat atactcttat ccgcatggtg
      481 gaggagctta tatcgtttca agagagaatt tggggaataa tgccggttta atcgcaggtg
      541 gatctttact agtagattat atgcttacag ttgctgtaag tgtttcttct ggaacagatg
      601 caatcgtttc tgctgtccca tcattatatc cgtttgcagt gcctatagct gtacttcttg
      661 tcgttggagt aacgattatc aatctgagag gtattactga atcagctagt ttacttgcaa
      721 taccagtata tttgtttgtt ttttctatta tagctcttat atttacaggt ttatttaaag
      781 tattaactgg tatggatgca agtcatgaaa cagctgcagt agggactcac gtacagggtg
      841 taaccatttt tcttttacta agagcatttg catctgggtc agcttcttta acgggtattg
      901 aagctatctc aaatgctgtt cctttattta aagaaccacg accaaaaaat gccgcaaaaa
      961 cattaacatt aatggcaggc ttacttggtt tcttctttgt cggaataaca gtacttgctt
     1021 ttgtttatgg aactgttcct gagctaaagg taacggtgct ttctcaaatt gctgaaaatg
     1081 tatttggcag aaacttcatg ttttatttta ttcaagccac tacggcactt attttagttt
     1141 tagcagctaa taccggattt tctgcatttc cgatgttagc atttaacttg gcgaaagata
     1201 aatttatgcc aagaatgtat ttagcaagag gagatagact gggctactct aatgggatta
     1261 tcactttagc tgtgggttct atcctactca ttattttgtt taaagggaaa acggaattac
     1321 tcattccatt atactctgtc ggagtgttca taccatttac gttgtctcaa acagggatga
     1381 tagtaaaatg gtggaaacag cgtcctaaag gttggaaaaa atcattatcg gctaatttac
     1441 ttggagcatc aatttcattt acagtattat tagtgttatt cttaactcga attgaatctg
     1501 tttggccagt atttgtcttt atgccaatta tgatttatgt tttccatcgt acgagacatc
     1561 attataggaa agtcggaccg caacttagaa ttgacgaaac aatggacttg ccggacttta
     1621 aagggaatgc cgtcattatt tgtgtgtctg ataccactaa agttgtagag ggtgcattac
     1681 aatatgctaa atctattggt gatacagtca ttgctgttca tatctctatt gataaaaaac
     1741 aggaaaaaga atttgttgag agatggaata gggtgcatcc tgaagtgcgt atggctaatc
     1801 tgttttctcc gtatcgatct atttcagatc cattaatgaa gtttattgat acagctaaac
     1861 aaaaagcaga tcaagacaat tactcactaa cagtattaat accacaattt attcctagaa
     1921 aaggttggca aaatgtcctt cataatcaaa caagcctatt gattcgcaca agacttctaa
     1981 tgaaaaggga tgtagtggtt tccacatatc cttatcattt aaaagaataa caagagaaaa
     2041 aaacggaaga gaccttcggg ggaagagggg gaactcttcc gtttttg
//
LOCUS       DABQVC010000279         2079 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.281,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000279 DABQVC010000000
VERSION     DABQVC010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.281"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(310..>2079)
                     /locus_tag="IBJ56_002785"
     CDS             complement(310..>2079)
                     /locus_tag="IBJ56_002785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HAM3419019.1"
                     /translation="NLHAFPKLQTLTVDNNHISVLPTSLKTENPVLTTLSAMNQTITL
                     KQKVIVSDLVLDNEVKNFGQITTAKSISNKGTYQNNQIKWLFEDIKSVNAVDYQFSEP
                     VQEATIQGTFSGKVTQPIKASKVPVISADAEMNYPKNETVSEAAFFKDISASVTDDAT
                     LTSDFESVVDFAKAGTYEVTLNAVNEDGVKATSVTVLVHIAKSPAPVITADKEITYTK
                     NAEVSITEYLAAIHAKTNDGSPIESDFATAVNWGTAGDYTVTLRSTNEDGVEAIPVEV
                     TVHIAKSPAPVITADKEITYAKNAEVSITEYLAAIHAKTSDGSSIEADLDTAVTWGTV
                     GGYTVTLRSTNEDGVEAIPVEVTVHIAKSPAPVITADKEITYAKNAEVSITEFLAAIH
                     AKTSDGSPIESDFATAVIWSTAGDYTVTLKSTNEDGVEAIPVEVKVHIVEPLAPTISN
                     VTFDVDDVQTTESLEAGELISEPLSPTKEGYTFIGWYDSKTGGNKWDFTTDKMPAYNI
                     ILYAQFSKDTNKAEAAGGDKPSTPSSIKVSPTGQSESGNLENRSNIKLPATGDDNATV
                     LLVGFGLLMLGLFIRLTQKKRAK"
BASE COUNT          525 a          438 c          384 g          732 t
ORIGIN      
        1 tagttcgagt cagtactaaa tcgtccggaa aatgtgtcta tttttgggtt tcacttatta
       61 aatcgcagag gaagttctat tattagacta tccttcgtct ttgagggaat aataggcaaa
      121 aaaaactatc accccttttc ataaagtcaa aagttgtttt gggacatgtt actcgttttt
      181 tctgctatct tttagtactc cagtatcaaa aaaagaggag acagctctct gtctcctctc
      241 cttgtgagtt gcaactattt atctcctaga agcaaccaat tacactattt tttaaatttc
      301 tatgagcttt tatttagcac gctttttttg agtaaggcga atgaaaagcc ccaacattag
      361 taatccaaag cccactaata aaacagttgc attatcatcg cctgtagctg gtaatttaat
      421 attagatcta ttttccaagt ttccactctc ggactgacct gttggactta cttttataga
      481 agagggtgtt gagggcttat ctccaccggc cgcttctgct ttatttgtat ctttactaaa
      541 ctgagcataa agaataatat tatatgctgg cattttatct gttgtaaaat cccatttatt
      601 accaccagtt ttcgagtcat accaaccaat aaaagtatag ccttcttttg ttgggctcaa
      661 tggttcagaa attagctctc cagcttcaag agattctgtc gtttgtacat catccacatc
      721 aaatgtcaca ttcgaaatcg ttggtgctag tggctctacg atatgcacct ttacttctac
      781 agggattgct tctactccat cttcatttgt agattttaac gttacggtat aatctcctgc
      841 agtgctccat attacagccg tagcgaaatc actttcaatt ggtgaaccat cactcgtttt
      901 agcatgaatc gctgcaagaa attccgttat gctgacttcc gcgtttttag cgtacgtgat
      961 ttctttatct gcggtaatta ctggtgctgg tgacttagcg atgtgcacag ttacttctac
     1021 agggattgct tctactccgt cttcatttgt agaccttagc gttacggtat aacctcctac
     1081 agtgccccat gttacagccg tatctaaatc agcttcaatt gatgaaccat cactcgtttt
     1141 agcatgaatc gctgcaagat attccgtgat gctgacttcc gcgtttttag cgtacgtaat
     1201 ttctttatct gcggtaatta ctggcgctgg cgacttggcg atgtgcacag ttacttctac
     1261 agggattgct tcaactccat cttcatttgt agaccttagc gttacggtat aatctcctgc
     1321 agtgccccaa tttacagccg tagcgaaatc actttcaatt ggtgaaccat cattcgtttt
     1381 agcatgaatc gctgcaagat attccgtgat gctgacttcc gcgtttttag tgtatgtgat
     1441 ttctttatct gcggtaatta ctggcgctgg cgacttagcg atatgcacta atacagtcac
     1501 cgaagtcgct tttactccat cctcattcac tgcatttaat gtcacttcat acgttcccgc
     1561 ttttgcaaag tccacaacac tttcaaaatc agaagttagt gttgcatcat ccgttacgct
     1621 tgcagaaata tctttgaaaa aggcagcttc tgataccgtt tcgtttttcg ggtaattcat
     1681 ctctgcatct gcgctaataa ctggtacttt agatgctttg attggttgtg tcactttccc
     1741 cgaaaaagtt ccttgaatag ttgcctcttg aacaggttca ctaaattgat aatcaacggc
     1801 attcacgctt tttatatctt caaaaagcca cttgatttgg ttattttgat aggttccctt
     1861 attagagatg gatttggcag tggttatttg accgaaattc ttcacttcat tatcaagaac
     1921 taggtctgac acgataactt tttgctttag agtgattgtt tgattcatcg cacttagcgt
     1981 tgttaatacg ggattttccg ttttcaaact tgttggcaat acactgatat ggttattgtc
     2041 tacggtgagt gtctgtaatt tagggaacgc atgtaggtt
//
LOCUS       DABQVC010000280         2075 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.282,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000280 DABQVC010000000
VERSION     DABQVC010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.282"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..603)
                     /locus_tag="IBJ56_002786"
     CDS             complement(<1..603)
                     /locus_tag="IBJ56_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenical efflux pump membrane protein ArsB"
                     /protein_id="HAM3419020.1"
                     /translation="MQITLAILVFAFTLFFVIWQPRKLSIGWSACGGALIAILLGVVT
                     LSDVATVTGIVWNATLAFIAIIIISLILDKIGFFEWAALHMARLARGNGLLMFILISI
                     LGAFVAALFANDGAALILTPIVLAMVRALNFDEKKVFPFIIASGFIADTTSLPLVVSN
                     LVNIVSADFFGISFSQYALIMWIPTLFSLVASILILYFYFR"
     gene            complement(747..>2075)
                     /gene="glnA"
                     /locus_tag="IBJ56_002787"
     CDS             complement(747..>2075)
                     /gene="glnA"
                     /locus_tag="IBJ56_002787"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HAM3419021.1"
                     /translation="KYTKEDIFRFADEQNVKFIRLQFTDILGIIKNVEIPVSQLKKAL
                     DNKIMFDGSSIEGFVRIEESDMYLFPDLDTWVVFPWTAEKGKVARMICDIYNPDMTPF
                     AGDPRANLKRVLKEMEELGFTEFNLGPEPEFFLFKLDENRRPTLELNDSGGYFDLAPT
                     DLGENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYEDAVTACDSIQTFKLVVKT
                     IARKHGLHATFMPKPLFGVNGSGMHFNMSLFNEKGNAFFDESGELELSQTAYHFLAGM
                     LKHARGYTAVTNPTINSFKRLVPGYEAPCYIAWSGKNRSPLVRVPSSRGLSTRLELRS
                     VDPSANPYLAMAVLLKAGLSGIKDELTPPAPVDRNIYGMNEEEREATGIYDLPESLGH
                     ALIELEKDDIIKAGLGEHIFEHFIEAKTIECDMFRTAVHPWEREQYLEIY"
BASE COUNT          667 a          439 c          356 g          613 t
ORIGIN      
        1 ccgaaaataa aaatataaga ttaaaatact cgcaactaaa gagaaaagcg ttggaatcca
       61 cataataagc gcatactgcg aaaaactaat accgaaaaaa tcagccgaaa ctatattgac
      121 taaattacta actacgagcg gcaaggacgt cgtatctgct ataaaaccgc tagcaataat
      181 aaatggaaat acctttttct catcaaaatt cagcgctcgc accatcgcta gaacaattgg
      241 tgtcaaaatt agcgccgccc cgtcattagc aaacaacgca gcaacgaaag ctcccaaaat
      301 agaaataaga ataaacatta ataacccatt acctcttgct aatcgcgcca tatgtaaagc
      361 cgcccactca aaaaagccaa ttttatctaa aatcaatgaa ataattataa tagcaataaa
      421 agcgagcgtc gcattccaaa caattccagt aactgttgcg acatctgata aagtgacgac
      481 gccaagtaat atggcaatta gcgcacctcc gcaagctgac catccgattg ataattttct
      541 tggttgccaa atcacaaaaa ataatgtgaa ggcaaatact aaaatagcta aagtaatctg
      601 catttcttcc cctttctcta atgaaaacct ccctttcact agcacatttt taaatatatg
      661 cctctatttg ccaaacatca aacatttgaa accgattttc caataaaaaa gcacgtttcc
      721 atctatagga aacgtgcttt tgactattaa taaatttcaa gatattgttc gcgttcccaa
      781 gggtgaactg ctgtgcggaa catatcacac tcaattgttt ttgcttcaat aaagtgttcg
      841 aaaatgtgct cacctaaacc agctttgata atatcgtctt tttcaagttc gattaaggcg
      901 tggcccaagc tttctggtag atcataaatg ccagttgctt cacgttcttc ttcgttcatg
      961 ccgtaaatgt tacgatcaac tggtgccgga ggagttaatt catctttaat tccagataaa
     1021 ccagctttaa gtagtaccgc cattgctaaa tatggattag cagatggatc gacgctacgt
     1081 aattcaagac gagtgcttag tccacgagaa cttggaacac gaacaagcgg gctacgattt
     1141 ttacctgacc acgcaatgta acatggtgct tcatatcctg gaaccaatcg tttgaatgag
     1201 ttaatggttg gatttgtaac agctgtatag ccacgggcat gttttaacat ccctgctaag
     1261 aaatgataag ctgtttggct caattctagt tctccgcttt catcgaagaa agcatttcct
     1321 ttttcattaa atagtgacat attgaaatgc attccagaac catttacacc aaagagcggc
     1381 ttcggcatga atgttgcgtg taaaccatgt ttacgagcaa ttgtttttac gactaattta
     1441 aatgtttgga tgctatcaca cgctgtaacg gcgtcttcat atttaaagtc aatttcgtgt
     1501 tgtcctggtg ccacttcatg gtgagacgct tcgatttcaa agcccatttc ttctaattca
     1561 agcacaatat cgcgacgaca gttttcacct aagtcggttg gtgctaaatc gaagtaacca
     1621 ccactatcat ttagttcaag tgtcggacga cgattttcat ctaatttgaa taggaaaaat
     1681 tctggctcag gtcctaagtt gaactctgtg aaacctagtt cttccatttc tttaagtaca
     1741 cgttttaagt tagcacgtgg gtctccagca aaaggagtca tgtcaggatt ataaatatca
     1801 caaatcattc ttgcaacttt tcctttttca gctgtccaag ggaacacaac ccaagtgtct
     1861 aagtctggga ataaatacat atcagactct tcaattcgta caaagccttc aatggaggaa
     1921 ccatcaaaca tgattttgtt atctagtgct ttctttagtt ggctaacagg aatttccaca
     1981 ttcttaataa tcccgaggat atccgtgaac tgtaaacgaa taaattttac attttgttca
     2041 tctgcgaagc ggaaaatgtc ttcttttgta tattt
//
LOCUS       DABQVC010000281         2045 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.283,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000281 DABQVC010000000
VERSION     DABQVC010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.283"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            10..486
                     /locus_tag="IBJ56_002788"
     CDS             10..486
                     /locus_tag="IBJ56_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HAM3419022.1"
                     /translation="MYKYTLCFIQRADEILLLNRQKSPWMGSWNGVGGKIEQGETLLE
                     SVQREITEETGISSNDYEIRDIGEMKWFVDGENLGGMHLFLANLPDNYVYPTPRATDE
                     GILDFKKRKWILNPENTGVVNNLPYIIKHAPVFPARIEVSTKYHENTLLHINHQSL"
     gene            complement(524..769)
                     /locus_tag="IBJ56_002789"
     CDS             complement(524..769)
                     /locus_tag="IBJ56_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419023.1"
                     /translation="MNKLLLITAAGYIVGVRSIEKENNQSILLNDVYINNPSQRLIDH
                     FESLEIAKEQVIGHKKLSTNDAQNLISRWEASYFTTS"
     gene            complement(766..1971)
                     /locus_tag="IBJ56_002790"
     CDS             complement(766..1971)
                     /locus_tag="IBJ56_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAM3419024.1"
                     /translation="MKEKLFNKGFVLITLINFVVYLVYYLLMVIIAVIAQEELNASLG
                     EAGFASGIYIIGTLLARLYMGKKLELFGRKRVLRFGILFFLVTTMAYLYMPTIAIMFI
                     IRFLNGFAYGTTSTATNAIVTAYIPNSRNGEGINYYGLSTSLAAAIGPFIGMILLSKT
                     SFYTIIIFSTVIVLLTALLCFYLPVKNIVLTTEHRKALQTWTVKSFIEYKVIPITFIA
                     FLMGISYSSVLTFLASYAREINLVSAGTFFFVVYALVITLTRPMSGKLFDAKGEKYVM
                     YPSYLFLAVGLVVLSTATSSLVLLISGGLIGLGYGTFMSNGQAVCLKVCEPHRIGIGL
                     STYFIGLDLGLGIGPYIMGEIHHVLSFQGIYIIAGAIAFICVFIYMFLSRKKVSSGAQ
                     EQLKGSEEV"
BASE COUNT          709 a          379 c          371 g          586 t
ORIGIN      
        1 ggtggaaata tgtataaata taccctttgt tttatccaaa gagccgatga aattctattg
       61 ttaaatagac aaaaatcccc atggatggga agttggaatg gtgttggtgg caaaattgag
      121 caaggggaaa cacttcttga atcggtccaa cgggaaatca cagaagagac cggaatttcc
      181 tcaaatgact acgaaattcg tgatatcggt gaaatgaaat ggtttgtgga tggcgaaaat
      241 ctgggaggta tgcatttatt tctggccaat cttccggata attatgtata tccaacgcct
      301 cgtgcaaccg atgaaggaat acttgatttt aaaaaaagaa aatggatact taatccggaa
      361 aatacaggtg tagtgaacaa tttaccttat ataatcaaac atgctccagt gttcccggct
      421 agaatagaag tttcaacaaa atatcatgag aacacattat tgcatattaa tcatcaatct
      481 ttataaaaaa agcattgcga ttattcgcaa tgcttccata ctatcatgat gtcgtgaaat
      541 aacttgcttc ccagcgactt attaaatttt gagcatcatt agtggataac tttttatgac
      601 cgattacttg ctctttggca atttcgagac tctcaaaatg atcaattaat cgttgtgaag
      661 gattattaat gtagacatcg tttagtagaa tagattggtt gttctccttt tctatacttc
      721 taactcctac gatataaccc gctgctgtaa tgagtaataa tttattcata cttcttcact
      781 cccttttagt tgttcctgtg caccactaga cacttttttt ctggataaaa acatatagat
      841 gaatacgcaa ataaatgcga tagcaccggc aataatgtaa ataccttgga atgaaagcac
      901 atgatgaatt tcacccataa tataaggccc aataccaagt cctaaatcaa gcccgataaa
      961 gtaggtagat aggccaatcc caatacggtg aggttcacat acttttaaac agacagcttg
     1021 gccattcgac ataaacgttc cataacctaa gccgatgagt ccgcctgaaa taagtagcac
     1081 gagacttgat gttgctgtac taaggaccac taatccaact gctaaaaaga gataactcgg
     1141 atacatcaca tatttttcgc cttttgcatc gaaaagtttt ccagacattg ggcgagttag
     1201 ggtaataact aatgcataga caacaaagaa gaacgttcca gcactcacta aattaatttc
     1261 tctagcatag gaagcaagga atgtaagcac actggaataa gaaatcccca ttaagaaggc
     1321 aataaatgtt attggaataa ctttatattc aataaaactt ttgacggtcc aagtttgtaa
     1381 ggccttccgg tgttcggttg ttaaaacaat atttttcacg ggtaaataga agcaaagtag
     1441 cgcagttaat aagacaataa ccgtggagaa aataataatc gtataaaagc tcgttttgct
     1501 aagtaaaatc attccgatga acggtccaat cgcagctgcg agacttgtgc tgaggccata
     1561 ataattaatc ccttctccgt ttctagaatt aggaatataa gctgtgacaa tcgcattggt
     1621 agcagttgaa gttgttccgt atgcgaatcc atttaaaaaa cgaataataa acataatggc
     1681 aatcgttggc atgtataagt aagccatcgt cgttactaag aaaaataaaa tcccaaatct
     1741 taaaacccgc ttacgaccaa atagttccag ctttttcccc atgtaaagtc gtgcgaggag
     1801 cgtcccgata atataaatcc cagacgcaaa tccggcttca ccaagagacg cgttcaactc
     1861 ttcttgagca ataacggcaa taataaccat tagcaaataa taaacgagat aaacgacaaa
     1921 gttaatcaat gttattaaga caaaaccctt gttaaataat ttttctttca tagaataaaa
     1981 tcccttccta cgtataattt gtaatttatc tcagcgacaa ggagtattat aggggatatt
     2041 cggag
//
LOCUS       DABQVC010000282         2031 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.284,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000282 DABQVC010000000
VERSION     DABQVC010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.284"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(64..1953)
                     /locus_tag="IBJ56_002791"
     CDS             complement(64..1953)
                     /locus_tag="IBJ56_002791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014654229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419025.1"
                     /translation="MVSLIILTQIYLLFSLQMNSYADAFLIKGEALNMLSNGGHATTQ
                     NYFLMYPNNIFITIIRYWLYSVGGTLGITNTYLLESAFLFVCMNITIFVLYWIVRKEN
                     GNKFGNIYLLIVLFCVPLFGYIWYFYTDTLVLPFTALIALFYYLYTKSSKWWYFIIIG
                     LLFAVGYQIKPNIIILLPAMLIHLCFIRNWRKILLNTVIVAICFFGLSTVFTPIAESY
                     DFKKDPTIEFPQTHWIMMGLGDPAGRYNSNDVAYTSQFKTKEEKEEANIEKIKERIEE
                     HGPLGLIKLFDNKMLNTWTDGTRAYTWYVNAALDYPAPYDYFFGDKRVVTELPAQLFH
                     IINLFLICLGALRFYKKREFDMSFFVNISLVGVWLFHLFWEANQRYIMFITPLMILSS
                     IYGFKFIVESLYTKKFDLKKGLRKGFLIASFCVFLLSTVAFAFIGNSVAGESQDINKY
                     LVKQSYAHIDLPVTSKQIVKQTFNVDSPFNSIQIAVLKEPDEASKYRLKVVDKTNKKD
                     IYDEVIAGSDFVEATNYQINVNEKPKGKTEYVIEVYQVENKNPEKPLVLGTYTPDAVD
                     LYPYGALYVNGVKKEKQDMGFTVSHVASEPIIPKYVSAIFDLGVIIIFAGTYYVFRRK
                     TGDNR"
BASE COUNT          722 a          370 c          283 g          656 t
ORIGIN      
        1 cttattgatg ttattatttg aatcactgtt catttataga ctctccctaa ttcaaaatat
       61 atgtcatcta ttatctccag ttttccttct aaacacataa tatgttcctg caaaaataat
      121 tataacaccc aaatcaaaaa tagcggagac atatttcggt attattggtt cagaagcaac
      181 atgtgagaca gtgaagccca tatcttgctt ctctttttta acaccattaa catacagtgc
      241 tccatacgga taaagatcta ctgcatctgg agtataggta cctaaaacta atggtttttc
      301 agggttttta ttttccactt gatagacttc aataacatat tcagttttac cttttggctt
      361 ttcatttaca ttaatttggt aatttgtagc ttctacaaaa tctgatccag ctataacttc
      421 atcgtaaata tccttcttat ttgtcttatc tacaactttc aaacgatatt tactagcttc
      481 atctggctct tttagaaccg ctatttggat agaattgaac ggcgaatcta cattaaacgt
      541 ttgcttaaca atttgtttgc tagtaacagg aagatctata tgcgcataac tttgttttac
      601 aagatattta ttgatatcct gtgactcgcc tgctaccgaa tttccaataa aagcaaaagc
      661 aactgtactt aataaaaata cgcagaaact cgcgattaaa aagccttttc ttagcccttt
      721 tttcaaatca aattttttcg tatataaaga ttctactata aatttaaacc catatataga
      781 ggacaagatc attaatggcg taataaacat aatataacgc tgatttgctt cccagaataa
      841 gtggaatagc caaacaccta ctagcgaaat attaacgaaa aaggacatat caaattccct
      901 tttcttataa aaacgtaaag cacctagaca aattaaaaac aaattaataa tatggaacag
      961 ctgagcaggt aattcagtga caacccgttt atctccaaag aagtaatcat aaggagctgg
     1021 ataatcaagt gcagcattaa cataccacgt atatgctcgc gttccgtctg tccaagtatt
     1081 taacatctta ttatcaaaaa gctttattaa gccaagcggt ccatgttctt caatacgttc
     1141 tttaattttt tcaatattgg cttcttcttt ttcttctttt gttttaaatt gtgaagtata
     1201 agcaacatca ttgctgttat aacgaccggc tggatcgcca agccccatca taatccaatg
     1261 tgtttgagga aattcaatgg ttgggtcttt cttaaagtca taactctctg cgattggtgt
     1321 aaaaacagtg cttaaaccga aaaagcaaat tgctacgatg accgtgttca atagaatttt
     1381 acgccaattt cttataaaac ataaatgaat aagcattgct ggaagtaaaa tgatgatatt
     1441 cggcttaatt tgataaccta ctgcaaacag cagcccaata atgatgaaat accaccattt
     1501 actacttttc gtgtatagat aataaaataa ggcaatcagc gctgtaaatg gcagtacaag
     1561 tgtatctgta tagaaatacc aaatataacc aaataatggc acacagaata aaacaattaa
     1621 taagtagatg ttcccaaatt tattaccatt ttctttacga acaatccagt acaatacaaa
     1681 aatagtaata ttcatacaaa caaaaaggaa agcactttct aataaatacg tattagtaat
     1741 accaagcgtc cctccaacag aatatagcca gtatcgaata attgttataa atatattatt
     1801 aggatacatt aaaaaataat tctgcgttgt tgcatgccct ccattagaaa gcatattcaa
     1861 tgcttctccc ttgataagaa aagcatctgc atatgaattc atttgcaagg agaaaagcaa
     1921 ataaatttga gttaatataa tcaagctaac caaaaagatg gttattacac catctccttt
     1981 tgtattcaat ctagtagaaa attgatagaa tcctataagt actaaaagcg c
//
LOCUS       DABQVC010000283         2006 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.285,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000283 DABQVC010000000
VERSION     DABQVC010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.285"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..865)
                     /locus_tag="IBJ56_002792"
     CDS             complement(<1..865)
                     /locus_tag="IBJ56_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase U32"
                     /protein_id="HAM3419026.1"
                     /translation="MTRREKMKISVATNFDGKLIEGIKGTNVTNLFGKLTNDFVGGGL
                     ETTNLNFIDQKKVAEHVKQAHENNLTFNYTFNNPFLSNEEFTQRGKNELKELLNWLYE
                     IEVDSLTVSIPILLQYVKKNYPKMEVKISSSVCVNSVSKIRSWEEMGADCIVLDPMTV
                     NRNFSLLKDLRNSTNIDLELIVNNNCLYECPMLPYHQAFLGQSSRVKGNKINEDYCYL
                     GCSKKRVLDPVNYLISDIIRPEDVQNYEELGYNNIKIIDRATPTELLVKRCKAYTDRK
                     YNGNLLDLIQHF"
     gene            1003..>2006
                     /locus_tag="IBJ56_002793"
     CDS             1003..>2006
                     /locus_tag="IBJ56_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAM3419027.1"
                     /translation="MNNLKDLNYFELRSILHEHEIDNIVHFSIGSLAETWYYSKQNVK
                     KKLKKYEERNLLEYIPGKGRGNLSTIIFRNNFHSEVYNVLTNCIENNDIKFALQLSQL
                     SIPQDWFSPFLEKIHTLFNDGSKNEDNILRFIINRKITVLDPTTVSLHFEASLIKQIS
                     NTLVNYNEEEDIFTPSVAIDWSHNEKFTTWNFNIRKNILFHNEKRLNGNDILFTFEEA
                     IKSSTGKWLLCNLKNMYCTSEFSVHFEFKTPEPAFLKLVTHYSLVIRPVLSNSKSFIG
                     CGQFKLIESKSNYVCLKSFSKYFKELPLIDGVEFWLMNSNFKKWLIVPQKKISLLTLM
                     L"
BASE COUNT          722 a          322 c          249 g          713 t
ORIGIN      
        1 caaaatgttg tattaaatct aacaaattcc cattatattt tctatctgta tatgctttac
       61 aacgcttcac taataattct gtaggagttg cacgatcaat tatttttata ttgttatacc
      121 ccaattcctc gtagttttga acatcctccg gtctaataat atctgaaatt aaataattta
      181 ctgggtctaa tactctcttt tttgaacacc ctaaataaca ataatcctca ttgattttat
      241 ttcctttcac gcgtgaagat tgtcctagaa aagcttgatg ataaggtagc ataggacatt
      301 cataaaggca attattatta acaatcagtt ctaaatcaat attagttgaa tttcttaaat
      361 cttttagaag actaaaattt ctattaactg tcattggatc taatactatg caatctgctc
      421 ccatttcttc ccaacttctg attttactaa cagagttaac acaaacacta gaagaaatct
      481 ttacttccat ttttggataa tttttcttca cgtattgtaa taaaatagga attgatacag
      541 ttaaagaatc cacctctatt tcatataacc aattaagaag ctccttcagt tcatttttcc
      601 cacgttgagt aaattcttca ttactcaaaa atggattatt aaaggtataa ttaaacgtta
      661 agttattttc atgtgcttgc tttacatgct ctgcaacttt tttttgatct ataaagttta
      721 aattagtagt ttctaagcct cctcctacaa aatcatttgt taattttcca aacaaattag
      781 ttacattagt tcctttaata ccttcgatta atttaccgtc aaaattagtt gctactgata
      841 ttttcatttt ttccctcctt gtcattttaa gaaatcttgt attgaattaa gcaacttcgt
      901 tcaataaatg aaatttttta tctccactaa attatcttat ttattagaat ttaaaaaaag
      961 tgtataatga tagaaaaagg tacccctttt attagttagg aagtgaacaa tttgaaagat
     1021 ctgaattatt ttgaattaag atctatactc catgagcacg aaatagacaa catcgttcat
     1081 ttcagtatag gaagtcttgc tgaaacatgg tactattcca aacaaaatgt aaaaaaaaaa
     1141 cttaaaaaat atgaagaaag aaacttatta gagtatattc caggaaaagg gcgaggtaat
     1201 ttatcgacaa taattttcag gaataatttt cattctgaag tatataatgt attaactaat
     1261 tgcattgaaa ataatgatat taagtttgca ctccaactat ctcaattatc aatacctcaa
     1321 gattggttct ctccattttt agaaaagata cacacccttt ttaatgatgg tagtaaaaat
     1381 gaagataata ttcttagatt tataattaat agaaaaatca ctgtactaga cccaacaact
     1441 gtttccttgc atttcgaggc ttccttaatc aaacaaataa gcaatacact agttaactat
     1501 aatgaagaag aagatatatt taccccttca gttgcaattg attggtctca caatgaaaaa
     1561 ttcacaacat ggaacttcaa cattagaaaa aatattttat tccataacga aaaaagatta
     1621 aacggtaatg atattctctt tacatttgaa gaagctataa aaagcagtac tggaaaatgg
     1681 ttactgtgta atttaaaaaa tatgtattgc acctctgaat tttctgtaca ttttgaattc
     1741 aaaacacctg agccagcctt tttaaaatta gtaacacatt attcacttgt aattagacct
     1801 gttctttcaa acagtaaaag ctttatcggc tgtgggcagt ttaagcttat cgaaagtaaa
     1861 agtaattacg tatgcctaaa aagtttttca aaatatttta aagaactccc tcttatagat
     1921 ggggtagaat tctggttaat gaattctaat ttcaaaaaat ggctaattgt cccacagaaa
     1981 aaaatatcac tactaacact aatgct
//
LOCUS       DABQVC010000284         1979 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.286,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000284 DABQVC010000000
VERSION     DABQVC010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.286"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(196..909)
                     /locus_tag="IBJ56_002794"
     CDS             complement(196..909)
                     /locus_tag="IBJ56_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3419028.1"
                     /translation="MVKYELIAADIREKINNGTYPPESILPDQVSLCKAYDCSRMTIK
                     KAFDVLALEGLVYRQRGAGTFVMKNALANKQDASLRDYDGLTKMMGDNRISSKIIAFD
                     IAFPDEKTQEQLLIKADQPVYKLIRLRLLDGAPYVLEHTTMPADLVPGLTKEILHHSI
                     YAYLQDSLGLVLSGAFRKINADKPSEYDQEYLACGEHDPVLEVEQVVYLKDGRPVEYS
                     RSRHRYDTRSFIMVDHREK"
     gene            complement(990..>1979)
                     /locus_tag="IBJ56_002795"
     CDS             complement(990..>1979)
                     /locus_tag="IBJ56_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HAM3419029.1"
                     /translation="GGAVALASFLILTPFFFNSPDGELITGALSLDRLGAKGMFIGMI
                     TGFIAAELYRFFVQRDWTIKMPAGVPPAVAKSFAALIPAILTLSIFLAINVMVQFFFH
                     TNLHDVVYTVIQKPLVGLGSGIVPTLIALFFVQVLWFFGLHGQIIVNSVMDPIWNTLM
                     LENLDAYKAGLPLPHIITKPFMEVFTVGMGGSGMTLAVVIALAFLMKSKQSKEIGRLA
                     LGPGIFNVNEPVLFGMPIVLNATILIPWIIAPLIVTTLNYFVMAAGIVPAPTGVAVPW
                     TVPIVINGILATNSWLGGALQVVDFFIVLIIWYPFLKLVDRTNIARESEAAIK"
BASE COUNT          629 a          417 c          337 g          596 t
ORIGIN      
        1 ataaaaaacg aaaaatgaat atatattcaa ttgaattcat ttctcttaca ccagcttttt
       61 tattataaca taatctgagt gactgtcaac ggctttttct aattttattt acattttttt
      121 catcggaagt tttttataca tttttacctc cataaaacaa agtcagctat gctttacggg
      181 catgctgact ttaatttact tttctcggtg gtcaaccata ataaaacttc tcgtatcata
      241 gcgatgtctt gatctagaat attccactgg tctaccatct ttcaaataca ctacttgctc
      301 cacttctaaa actgggtcgt gttccccgca cgctaaatat tcttgatcat attcagatgg
      361 cttatcggca ttaattttcc gaaaggcacc gcttagcacg agtccaagtg aatcttgtaa
      421 gtatgcataa atcgaatgat gcaaaatttc tttcgttaaa ccaggaacta aatctgccgg
      481 catcgttgta tgctctaaca catatggtgc gccgtccaag agccgtaacc gaatcaactt
      541 gtacactggc tggtctgctt ttattaaaag ttgttcttgt gttttttcat ctgggaaagc
      601 aatatcgaat gcaataattt tactcgagat tcggttgtct cccatcattt ttgtcaaacc
      661 gtcataatcc cgcaaactcg catcttgctt attagctaag gcatttttca tgacaaaagt
      721 ccccgcaccc cgttgtctgt aaacaagtcc ttcaagcgct aaaacgtcaa aggctttttt
      781 tattgtcatt ctgctacaat cataagcttt acacaagctc acttgatcag gaagaatgga
      841 ttctggtgga taagtaccgt tgtttatttt ttcgcggata tctgctgcaa tcaattcata
      901 cttaaccaat tcgatcgctc cttcgcttga attaaaaatg tctagccatt tctagtcaaa
      961 ttatagcata tcgaaaagga aaatttaact tatttgatag ctgcctctga ttctctcgca
     1021 atatttgtcc gatcgactag ttttaagaac ggataccaga taatgaggac gatgaagaaa
     1081 tcgactactt ggagcgcccc gcctagccat gagttggttg cgagaatacc attgatgaca
     1141 attggcaccg tccatggaac agcaaccccg gttggagcag gaacaatacc agctgccatt
     1201 acgaaataat tcaaagtagt tacaatcaaa ggcgcaataa tccatggaat taaaatcgtt
     1261 gcatttaata caattggcat accaaaaagt accggttcat taacgttaaa aattcctggc
     1321 ccaagtgcta atcgaccaat ttctttactt tgcttacttt tcattaagaa tgctagtgca
     1381 ataacgactg ctaaagtcat cccagatccg cccataccaa cagtaaagac ttccataaat
     1441 ggtttcgtaa taatatgtgg caatgggagt ccagctttat aggcatctaa attttcaagc
     1501 attaacgtat tccaaatcgg gtccattacc gagttgacga tgatttgacc atgcagtccg
     1561 aaaaaccata atacttggac aaaaaataaa gcgattagtg ttggaacaat tcctgaacca
     1621 agccccacta aaggcttttg aataacagta taaacaacat catgtaagtt tgtatggaag
     1681 aagaattgta ccataacatt aattgctaaa aaaatactta atgttaagat agcgggaata
     1741 agtgctgcaa atgatttagc aacagcgggt ggaactcctg caggcatttt gattgtccaa
     1801 tcccgttgaa caaaaaatcg atataattct gcagcaataa aaccagtaat cattccgata
     1861 aacatacctt ttgccccaag tcgatctaac gaaagtgctc cagtaataag ctctccatca
     1921 ggactattaa agaaaaatgg cgttaaaatc aagaagctag caagggcaac agcccctcc
//
LOCUS       DABQVC010000285         1975 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.287,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000285 DABQVC010000000
VERSION     DABQVC010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.287"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            172..1092
                     /gene="mogR"
                     /locus_tag="IBJ56_002796"
     CDS             172..1092
                     /gene="mogR"
                     /locus_tag="IBJ56_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility genes transcriptional repressor MogR"
                     /protein_id="HAM3419030.1"
                     /translation="MPKSEIRKLLQEIKKQVDNPGNSSTTEIKKMASEAGIDEKIAEE
                     IYHLLTEFYQAVEEHGGIEKYMHSNISWLKIELELLSACYQIAILEDMKVLDISEMLS
                     LNDLRIFPKTPSQLQNTYYKLKKELIQVEDIPKNKPGRKRKTQKNTKKEKTNIFGKVV
                     PAEFKAPTSIKEQISYDKSREKNLVDLLSGVKSNVQLLSENQGEENNVYDLLKSIYSL
                     SSLAVQKEELDKKYQDLQTKYQELEQENSYLKQQNETMTDSFHTLVLQVADFAYASDL
                     DQIQALPLFSQQLVVTLNQLGVFKENYKQM"
     gene            1111..1320
                     /locus_tag="IBJ56_002797"
     CDS             1111..1320
                     /locus_tag="IBJ56_002797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419031.1"
                     /translation="MYIEIYTVNGESIRLDDDAKINNISIHELSKADLKNLFNEKCIE
                     LTKYDLTYFINTNQVNWFLVSEGIH"
     gene            complement(1359..1787)
                     /locus_tag="IBJ56_002798"
     CDS             complement(1359..1787)
                     /locus_tag="IBJ56_002798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HAM3419032.1"
                     /translation="MGFLEAYKSFWRNYVNFSGRAPRSAYWYVVLWNVIIFVILYALA
                     FIFGISAIMEAAMGGTGMAGGGGAIVLVIILWLYLLAALLPTISLMVRRLHDSGKSGF
                     FVLLSLIPFAGGIIMLIFMCLESDGPNQYGDGDIDSKFDF"
BASE COUNT          774 a          390 c          279 g          532 t
ORIGIN      
        1 ggaaaacttc tcattattcg atttatattt ttctatttaa ctcaaaaaaa ggttcttcat
       61 acccaatcct tttgacctac tcgcgttccc tttacacaac taacatatat tgttattata
      121 aaaataaaca gaaaatcaat aatactatag gatagagagg tatgtgattg tatgcctaaa
      181 tcagaaataa gaaaattact tcaagaaatc aaaaaacaag tagataatcc ggggaattca
      241 tctacaactg aaattaaaaa aatggcttca gaagctggca ttgacgaaaa aattgccgaa
      301 gaaatctacc atttactcac tgaattttat caagccgttg aagaacacgg tggaatcgaa
      361 aaatatatgc attccaatat tagttggtta aaaatcgaat tagaactact ttccgcatgt
      421 taccaaattg ctattttaga agatatgaag gttcttgata tttctgaaat gctcagccta
      481 aatgatttgc ggatttttcc aaagactcca agccaactac aaaatactta ctacaaacta
      541 aaaaaagagc ttatccaagt agaagatatt ccgaaaaaca agcctgggag aaaaagaaaa
      601 acacaaaaaa atacaaaaaa agaaaaaacc aatattttcg gcaaagttgt gccagctgaa
      661 ttcaaagcac caacgtccat caaagaacaa atcagctacg acaaatcacg cgaaaaaaac
      721 ttggttgatt tactttccgg cgttaaaagc aatgttcaac ttttaagcga aaaccaaggt
      781 gaagaaaaca acgtatatga cttactaaaa agcatttact cactctcttc ccttgctgtt
      841 caaaaagaag aactcgacaa aaaataccaa gacttacaaa caaaatacca agaattggaa
      901 caggaaaatt cctatttaaa acaacaaaac gaaaccatga cagattcgtt ccatacactt
      961 gtgttacaag tagctgattt cgcttatgcc agtgatttag accaaatcca agcactgcca
     1021 cttttcagcc agcaactcgt tgtaacactg aatcaacttg gtgtattcaa agaaaattat
     1081 aaacaaatgt aatttagaag gggtggcacg atgtatatcg aaatttatac cgtaaatggg
     1141 gaatctattc gccttgacga cgacgcaaaa atcaacaaca tcagcatcca cgaattatca
     1201 aaagcagact tgaaaaacct ttttaacgaa aaatgtatcg agttaacgaa atacgactta
     1261 acgtatttta ttaataccaa ccaagtgaat tggttccttg taagcgaagg aatccattaa
     1321 aaaaacgagc taggattatc tcctagctcg ttttctattt aaaaatcaaa tttactatct
     1381 atatccccat caccatattg gtttggtcca tcactttcaa gacacataaa aattaacata
     1441 ataattccgc cagcaaatgg aataaggctt aaaaggacga aaaatccact tttgccagaa
     1501 tcatgtaagc gtcgaaccat taagctgatt gttggaagta aagccgctag caagtatagc
     1561 cataaaatga ttaccagaac gattgcaccg ccaccgccag ccattcccgt accacccata
     1621 gctgcttcca taatagctga aataccaaaa ataaaagcta aagcataaag tattacaaaa
     1681 ataataacat tccaaagtac tacataccaa tacgccgatc tcggggctct gccactaaag
     1741 ttaacgtaat ttctccaaaa tgatttgtaa gcttctaaaa atcccatatt tcctcctatg
     1801 taaataaatt tcaccgtatc tataaggata tatgtagcca tcccattaca caagctctta
     1861 caataaagat tcataaaata gacacatttc tatttttaat tgaaaatgtg tctattttca
     1921 caggccttta aacctattag acctccaaac tatagatttt taatacatat cagca
//
LOCUS       DABQVC010000286         1957 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.288,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000286 DABQVC010000000
VERSION     DABQVC010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.288"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..425
                     /locus_tag="IBJ56_002799"
     CDS             <1..425
                     /locus_tag="IBJ56_002799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419033.1"
                     /translation="EMSDDALKTTIINKSQPMHLLLELGIFDKEDLTEKFPSSEIIEI
                     LYERTKLLLIKDIQLDSVHLDEVLFIFRLLANSNFLVHIISGYKIDNILHYSQKDTIF
                     KRNKVVGKFELHLDKDEFLIMSDYDGSSVIILSNEQKC"
     gene            584..901
                     /locus_tag="IBJ56_002800"
     CDS             584..901
                     /locus_tag="IBJ56_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419034.1"
                     /translation="MVGGCNLDKSSIMDVIKMNLTEALTDVITSKELVERSDKILYVD
                     ENQQSINDNLSLEERELLEDISAQWDLYLVNSYDIDTLQSLDFEKVKFPEAYLKEWYR
                     QTI"
     gene            1020..1808
                     /locus_tag="IBJ56_002801"
     CDS             1020..1808
                     /locus_tag="IBJ56_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419035.1"
                     /translation="MLKIKKQAQSIYAFKETGGEVLNFQIEKNCLKLFSGEEILCEIN
                     DEIISNRYFRINKVILSDEKICIFCHGEACDYLFILCMGKNFKYILREGVEDFLVIND
                     EAYVIYSEEGMFSDEGNLSIAKLGLIKIDIFTGEITGLLDDTILETLIDVQSISCNNK
                     TIRILCYEDNGDDFTLDYDLTSKKVRNKVVINYTVDGLVSVGDNFYACYRNRIYKVNE
                     SMEITEEIIIDKKVYDEAYAISTGYSEVVLESENEFNIVQLSKL"
BASE COUNT          738 a          224 c          380 g          615 t
ORIGIN      
        1 atgaaatgtc agatgatgca ttaaaaacaa ctattataaa taaaagtcaa ccaatgcatt
       61 tgcttttaga gttaggcatt tttgacaaag aagatttaac tgagaaattt ccaagtagtg
      121 aaataatcga gattttatat gaaagaacga agctgttatt aattaaggac atccaattag
      181 atagcgtgca tctcgatgaa gttctattta ttttcagact tttagccaat tcaaactttc
      241 ttgtgcacat tatttctgga tataaaatag acaatatttt gcactattca caaaaagata
      301 ctatttttaa aagaaataag gtagtaggaa aatttgagtt gcatcttgat aaagatgagt
      361 ttttgattat gtcggattat gatggaagct cagttataat cttaagtaat gaacaaaaat
      421 gctgatttta agaaattagc caaatcagaa gccagggtga accaaaaatg tccacaatat
      481 gcttgataac ctgcgattcg ggtgcagtgt agaacaagat ttgatgaaca aactaaaaat
      541 aagcccttca ctatagattt aataacggga aatattctca taaatggtag gaggatgtaa
      601 tttggataag agtagtatta tggatgtgat aaaaatgaat ctcactgagg cacttaccga
      661 tgtaattaca agtaaagaac tggttgaaag gtcggataaa atactatatg ttgatgagaa
      721 tcagcagtca ataaacgata atctatcatt agaagaaaga gagttactag aagatatatc
      781 agcacaatgg gatttatatc tagttaattc gtatgatatc gatacactac agagtttgga
      841 ttttgagaaa gttaagttcc ctgaagcata tttaaaggag tggtatagac aaacaatcta
      901 gctgatttga tattacaaca aaggttagaa gggcatgaaa ataagaaaag ctacttatta
      961 aaagacctaa tagtgtattt cgattatgaa atttgaggtc taaggaggga ctatgatcga
     1021 tgctgaaaat aaaaaaacaa gcacaatcta tttacgcttt taaagaaact ggaggagaag
     1081 tacttaattt ccaaatagaa aaaaactgtt tgaaactttt ttctggggaa gaaattttat
     1141 gtgaaataaa cgatgaaata atttccaatc ggtatttcag aattaacaaa gtcatattgt
     1201 cggatgagaa gatttgtatt ttttgtcatg gagaggcttg cgattattta ttcatcttat
     1261 gtatgggaaa gaattttaaa tatatattga gagaaggagt ggaagatttt ctcgttataa
     1321 acgatgaagc ttatgttatt tattcggaag aaggtatgtt tagcgatgag ggaaatttat
     1381 ccatagcaaa acttgggctt attaaaatag atatatttac aggagaaatt actgggctat
     1441 tggatgatac cattttagaa acgctcattg atgtacaatc gattagctgt aataataaaa
     1501 ctatacggat actgtgttat gaagataatg gtgatgactt cactttagac tatgatttaa
     1561 catctaaaaa agttcggaat aaagtcgtaa taaattatac tgtggacgga ttggtgagtg
     1621 tgggagacaa cttttacgct tgctatcgga accgtattta taaggtaaat gaaagtatgg
     1681 aaattacgga agaaatcatt atagataaaa aagtatatga tgaagcatat gcaataagta
     1741 ccggatatag tgaagtagtt ttagaaagtg aaaatgaatt caacattgtc cagctttcta
     1801 aattatagag gaatagctgt tttaacgcta ctaagcaaag gtttttaagc aaataaaggg
     1861 gcatcaagaa aacacaattt tttaatacta atggatattt gttcgctata tcttttgttt
     1921 tctagtacct tggcataaaa tttactcttg gagatga
//
LOCUS       DABQVC010000287         1956 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.289,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000287 DABQVC010000000
VERSION     DABQVC010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.289"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..185
                     /locus_tag="IBJ56_002802"
     CDS             <1..185
                     /locus_tag="IBJ56_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419036.1"
                     /translation="LPKEITDNISPKLFVRREDYSAFENYLSQYFNAMKSMEFADDKQ
                     AIGMIEHGATLFYEVL"
     gene            417..653
                     /locus_tag="IBJ56_002803"
     CDS             417..653
                     /locus_tag="IBJ56_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015084540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419037.1"
                     /translation="MPDWDFNNPESMKAWDLASGSYAEQVSGEVRAVVGSDLRKGNIW
                     ENVELPRLKNNPNVTKITTIDPKTGLEKIIFERK"
     gene            686..892
                     /locus_tag="IBJ56_002804"
     CDS             686..892
                     /locus_tag="IBJ56_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419038.1"
                     /translation="MKFDLENGYVVKADGEMLVGGEFVVFKDSMKNWEPPYENKKLSE
                     SEVQEIIHQVKQSTNENTVQISFE"
     gene            1732..>1956
                     /locus_tag="IBJ56_002805"
     CDS             1732..>1956
                     /locus_tag="IBJ56_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419039.1"
                     /translation="MFHERIKNSDLINEKQYPVKVVFDEISDEEFISIINSVSKGEGF
                     GVESGTCLFPGDLDEYDIAQGEGFGGVEFGL"
BASE COUNT          740 a          225 c          399 g          592 t
ORIGIN      
        1 agctaccaaa agaaattaca gataatattt ctcctaaact ttttgtaaga agagaagatt
       61 attcagcttt tgagaattat ttaagtcagt attttaatgc aatgaagagc atggaatttg
      121 cagatgataa acaggctata ggtatgattg aacatggtgc aaccttattc tacgaagtat
      181 tataatttta gattctaaag agctagtatt gtcattaaat ggtcagagat aatgaattca
      241 ttatctctga ccatttttga aatatatatt taaaactttt tagcaacaga aaggataata
      301 aatttcgtac ataaaaacaa taaactttcc ctcccaagaa agccagtggg gctgatatag
      361 ctaaaagtaa aggtggcgtt actttagaat caacaatagg aaataaaaat attgaaatgc
      421 cagactggga ttttaataat cctgagtcaa tgaaagcatg ggatttggct tctggttctt
      481 atgcagaaca agtttctggt gaagttcgtg cagtagttgg ttcggatttg agaaaaggaa
      541 atatttggga aaatgttgag ttacctagat taaaaaataa tcctaacgta acgaaaataa
      601 caacgattga tcctaaaaca ggacttgaaa aaataatttt tgaaaggaag taagtgaaat
      661 gaaaattaca ggtaatagtt cacaggtgaa atttgattta gagaatggat atgtagtgaa
      721 agcagatgga gaaatgttag ttggaggtga atttgttgta tttaaagatt ctatgaagaa
      781 ttgggaacct ccatatgaaa ataaaaagct ttctgaatct gaagtgcaag aaattattca
      841 ccaggtaaaa cagagcacaa atgaaaatac agtacaaatt tcatttgaat aaaagaaatg
      901 cgagaagtag agtaggtttg aaagtacaaa ttcaaatatc aatgcaaacg atgggcatat
      961 tatgctgaaa aggctcgagg gacaagtcaa ggtactagct atttcgtgag ttcctcgggc
     1021 aacggaaaag acgttcaaaa caagtcacag ggcaacaggg aattgtattc tacgttgtat
     1081 tttctagcaa tacaacaaat ttatcttacg aataagggag aacctagaaa tctagtgttt
     1141 cgggtttatt tcgagcggaa agttttagat gctcatattc catataaaaa gtaggaggaa
     1201 ctatgaaaaa aattgaaatg atacaaaaag tgattgagga tacagaatac tgggatgcta
     1261 gagtatttga ttgtaaacac tctattttgg tgatgaattt catgtaatat ttgagggaga
     1321 agaggaccaa gtatatataa ttaaatttat gaattgttac aaggtatcgt acaaaaacag
     1381 ttttgctcca gacactaata tgaaagttag agatatgagt tagggacaat taggatactt
     1441 tatgcaagat atttctctgg aaaagcatgg agataacgaa gaatttattg attctttcct
     1501 taatttatca attatgacaa tttctgtagt ttgtaaagat attattgtgg aagaattgga
     1561 tcaaaaaaat atctcttttt tggaaagata agcagtagaa taaaagcacc ttattacatg
     1621 gttggtatca tatgagagag ctttaactaa aaattctatg tccacaacta cagtgacaat
     1681 taagaattcg tttttaacca cttatcctga atgagtagga ggaaaaataa tgtgtttcat
     1741 gaaagaatca aaaatagcga tttaattaat gaaaaacaat acccagtaaa agtagttttt
     1801 gatgaaattt ctgatgaaga atttatttca attataaatt ccgtttcaaa aggagaggga
     1861 tttggagtgg aatcgggtac atgtcttttt ccgggagact tagatgaata tgatattgct
     1921 cagggggaag gatttggcgg agtagagttt ggatta
//
LOCUS       DABQVC010000288         1918 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.290,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000288 DABQVC010000000
VERSION     DABQVC010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.290"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1916
                     /locus_tag="IBJ56_002806"
     CDS             <1..1916
                     /locus_tag="IBJ56_002806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAM3419040.1"
                     /translation="EYNLDIDPRILELLGPHLYTNIYYILGELIANAYDADAKNVYVI
                     DRIDEENKLIVEDDGSGMSYENKDVKNFLSVAKESRTNAINSYTKLNNRRKMGRKGVG
                     KLASLSVSENVNIKTIKDGEKSGFVLSRKVINKKLEAINEDTISFIKIKNHGTAIEMT
                     NPTYKLPVHLSTMANNLLKIFPLVDETFRIHLIRGDKHEILEESQSALVRKMAVLTTL
                     GEDYKKMNEFYNCDFKEQKNSLLKNKESKKIILNMLNKDNEEQDYTLEIKGWVGAYKT
                     TREMKKNMQEFSDNFISLYANSKLGIFNILPIVGKNKLQEVYIAGQLHIDLFEETNLP
                     DMALSNRQGYKSDDERYEKVLEYVKEELLPGILKDRSFYSELLKAGKKEKEIKQQKKK
                     EEELKEKSIGFKRDVTREMTSEISKISTINKDEVESIVNTQVNKHMKSLGLKSTIDSN
                     KRKVLISHTKADKKLADLIYIMLLKNGLSKDSILYSNCEDEEARIPAEMSIYGYLRDF
                     FVDSISVEKIYVIYVTSENMRKSWGAIAEVGAGWITQTDHCIFTLNDFSPEAPLDVAR
                     QYQNTLRLGNDFYMDYTNLDMFCIWIENIGEKFGCKILSREENKAELKEVVCVVSSDE
                     LFELKQKCSTNAN"
BASE COUNT          772 a          202 c          370 g          574 t
ORIGIN      
        1 aagaatacaa tctggatatt gatccaagaa tattagaatt attagggcct catttgtata
       61 cgaatatcta ttacatttta ggggaattaa tagctaatgc ttatgatgca gatgctaaaa
      121 atgtatatgt aatagataga atagatgaag aaaacaaact tattgttgaa gatgatggta
      181 gcggaatgtc ttatgagaat aaagatgtta aaaatttttt gagtgtcgct aaagaaagta
      241 gaacgaacgc tataaattca tatacaaaat taaataatcg tcgaaaaatg gggagaaagg
      301 gtgtggggaa acttgcttcc ctttcagtct cagagaatgt gaacattaag acaataaaag
      361 atggtgaaaa atctggattt gtattatcaa gaaaggtgat caataaaaaa ttagaagcaa
      421 ttaatgaaga taccattagc tttattaaaa ttaaaaatca tggaaccgca attgagatga
      481 caaatcctac atataaatta cctgttcatt taagtacaat ggcgaacaat ctcttgaaaa
      541 tatttccact tgtagatgaa acatttagaa ttcatcttat tagaggagat aaacatgaaa
      601 ttttggaaga atcacagagc gctttagtca ggaaaatggc tgttttaact actttaggtg
      661 aagattataa gaaaatgaat gaattctata attgtgattt caaggaacaa aaaaatagtt
      721 tattgaaaaa taaagaatct aaaaaaatta tacttaacat gctcaataaa gataacgaag
      781 aacaagatta tactttagaa attaagggat gggtaggggc atacaaaacc accagagaaa
      841 tgaaaaaaaa catgcaggag ttttctgata atttcatttc actttatgct aattcaaaac
      901 ttgggatatt taatatttta ccaattgtag ggaaaaataa attacaagag gtatatattg
      961 ctggtcaact tcatattgat ctattcgagg aaactaatct tccagatatg gctttaagta
     1021 atagacaagg gtataagagt gatgatgaga ggtatgaaaa agttttagaa tatgttaagg
     1081 aggaactttt acctggtatc ttgaaagata gatcttttta ttctgagctt ttgaaggctg
     1141 gaaaaaaaga aaaagaaata aagcaacaaa agaagaaaga agaagaatta aaagaaaaaa
     1201 gcataggttt caaacgtgat gtaacacggg aaatgactag tgaaatttct aaaataagta
     1261 cgataaataa ggatgaagtc gaaagtattg taaacacaca agtaaataaa catatgaagt
     1321 ctttagggtt gaaatcaaca attgactcta ataaaagaaa agttttgatt agccatacga
     1381 aggctgataa aaaattagcg gatcttatat atataatgct tctcaaaaat ggtttgtcaa
     1441 aagattctat tctatatagt aattgtgaag atgaagaagc tagaattcca gctgaaatga
     1501 gtatatatgg ttatctgaga gatttttttg tagatagtat ttctgtagaa aaaatatatg
     1561 ttatttatgt tactagtgaa aatatgagga aatcatgggg ggcaattgct gaggtaggtg
     1621 caggatggat cacacaaacg gatcattgta tatttactct taatgatttt tcaccagaag
     1681 ctcctttgga tgtagcccgt caatatcaga atacattgag attgggaaat gacttttata
     1741 tggattacac gaatcttgac atgttttgta tttggataga aaatatcgga gagaaatttg
     1801 gatgtaaaat tttgagtaga gaagagaata aagcagaatt aaaagaagtt gtttgcgttg
     1861 tttcaagtga tgaattattt gagctaaagc aaaaatgttc tacaaacgct aattaact
//
LOCUS       DABQVC010000289         1907 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.291,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000289 DABQVC010000000
VERSION     DABQVC010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.291"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..>1907)
                     /locus_tag="IBJ56_002807"
     CDS             complement(<1..>1907)
                     /locus_tag="IBJ56_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-glycerol:glycerophosphate
                     glycerophosphotransferase"
                     /protein_id="HAM3419041.1"
                     /translation="ILETLESIHEQTFDMYEVLLIDDGSTDKTIEMVTEYISDKPKFQ
                     LHTQPNGGPASARNYGLRLANRMYICFVDSDDIIPNYALQLMYDGAISTGSKLITGAT
                     KRFNSEGEWFIPMHIQYNIAKPGMKTLLKNPELFYSIGPCAKLYHHSLIDGVFFPENI
                     RYGEDQPFVLHALLQAENIYTVEKVVYYYRLRDGESQSLTQSVNKDPIRILKSVFQIF
                     DYGEAELLKNNTEYEIALKYYQRVSSVELWGALRAAIESKKSENQQIAFTMTLDWLKT
                     KSDDFLNIIPSFRYFLLFSSIERVRYITRDNKGNYRQLITYLWERQGEEAKIAFRKAY
                     PIHMKAALQIMEHNNWGAARKISFKFIIRRKFKAPILIRKISRGIIFRLATLMPRKKD
                     QVILATERSTSLEGNLLAIYDYLFYNDMPQKVYVFLRKNRNWFEMFQLYYALGRTKTI
                     VLDDYYNKIYGLKFNKKTHVVQSWHATGAFKKFGFSALEGTDANTEEFETRAHSPYTD
                     VLVSSEGIIPEYMEAFRKQANQIKPIGVPRTDVFFDQEYVAYTKEKYMKMYPQLRDKK
                     VLLYAPTFRGGPNERFNYSVVLDIAALKKELGDTHILILKFHPVIKNVSFNVDENDPF
                     ILDLTLNNDIN"
BASE COUNT          595 a          357 c          297 g          658 t
ORIGIN      
        1 cattaatatc gttattcaac gtcaagtcta aaataaatgg atcattttca tccacattaa
       61 atgaaacgtt cttaataaca ggatggaatt ttaaaattaa aatatgtgta tcaccaagtt
      121 cttttttcaa agcagcaata tcaagtacaa cgctataatt aaagcgttca tttggcccac
      181 cgcggaaagt tggcgcatat agcaacactt ttttgtcgcg aagttgcgga tacattttca
      241 tatatttttc ttttgtatat gccacatatt cttgatcaaa aaacacatct gttctaggca
      301 caccaatagg tttaatttga ttagcttgtt ttctaaaagc ttccatatat tcaggaatta
      361 tgccttctga actaacaaga acatctgtgt aaggcgaatg agcacgtgtc tcaaattctt
      421 ctgtattagc atctgtacct tcaagcgcac taaagccaaa ctttttgaaa gcccctgtcg
      481 catgccatga ttgtaccaca tgtgtctttt tattaaattt caaaccataa attttgttgt
      541 aataatcatc taatacaatt gttttagttc gccctaatgc ataatacaat tggaacattt
      601 caaaccaatt acgatttttc cgtaaaaaca catagacttt ttgtggcata tcattataaa
      661 acaggtaatc ataaatggct aataaatttc cttctaagct tgtactacgt tctgtagcta
      721 aaataacttg gtcttttttg cgtggcatca aagtagctag tctaaatata atgcctctgc
      781 ttattttccg aattagaata ggcgccttaa atttacgacg gataataaat ttaaaggaga
      841 ttttacgagc ggctccccaa ttattatgtt ccataatttg taaagcagct ttcatatgga
      901 taggatatgc ttttctaaat gcaatttttg cttcttcccc ttgtctctcc cacaaatacg
      961 taattagttg gcgatagttt cctttattgt ctcttgtaat atagcgaaca cgttcgatac
     1021 tactgaacaa caagaaatat ctaaaggaag gaattatatt taggaagtca tctgatttgg
     1081 tttttaacca gtctaatgtc atcgtaaaag caatttgttg gttttcactt ttcttacttt
     1141 caatagccgc ccttaaagcg ccccaaagct caacactaga tactcgttga taatatttta
     1201 aagctatttc atattccgta ttatttttga gtaactctgc ttccccgtag tcaaatattt
     1261 gaaaaacaga ttttaaaata cgaattggat ctttatttac agattgcgtt aatgattgcg
     1321 attcaccatc acgtaagcgg taataataaa ctactttttc tacagtatag atattttctg
     1381 cttgaagtaa agcatgcaaa acaaatggtt gatcttcacc gtaacgaata ttttcaggga
     1441 aaaacacacc atctatcaaa gaatgatgat agagtttcgc acaaggacct atcgaataaa
     1501 atagctcggg atttttcagt agtgttttca ttcctggctt ggcaatatta tattggatat
     1561 gcatcggaat gaaccattca ccttctgaat taaagcgttt cgttgcgcct gtaatcaatt
     1621 ttgaaccagt ggatattgca ccgtcataca ttagttgaag tgcatagttc ggaataatat
     1681 catcactgtc cacaaagcaa atatacattc tattcgcaag acgcaaccca taattcctag
     1741 ccgaagctgg tccaccattt ggttgagtat gcaactgaaa ttttggctta tctgatatat
     1801 attctgtcac catttctatt gttttatccg ttgaaccatc gtcaattaat aaaacttcgt
     1861 acatgtcaaa tgtttgctca tggatgcttt cgagcgtttc caggatt
//
LOCUS       DABQVC010000290         1878 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.292,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000290 DABQVC010000000
VERSION     DABQVC010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.292"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            31..909
                     /locus_tag="IBJ56_002808"
     CDS             31..909
                     /locus_tag="IBJ56_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5068 domain-containing protein"
                     /protein_id="HAM3419042.1"
                     /translation="MMKKRIIILAVLVVLLIGGVVIGVYASGNSAKDNNESKTTAKKA
                     TSTPKKAIDTEKKETTTKEATTKDSVTDDKGVVTKGSSDVEKNAPAKNNSSATDKSNS
                     PTTPAFSLSSTGFKTSNVSSVLGGTVTTTYLSSAPSFEKIFENLTIEVNQYKVEHVVG
                     ANKAVSASNPESYLANKNGYVITLDISIKNTSAKDKMYKADQITLIGANEFVGGSLDN
                     FVPSNFHLIGSKADPNIFTAGKTARGLLTFTMTEAVYNDLAADSKIGVPNPDKFDASV
                     SEANAGDDVVASFPVK"
     gene            complement(941..1171)
                     /locus_tag="IBJ56_002809"
     CDS             complement(941..1171)
                     /locus_tag="IBJ56_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaI family protein"
                     /protein_id="HAM3419043.1"
                     /translation="MNAKCILCERVDELDNREFKTKQLRNKPIRMYLCPECEHRVAIN
                     TISRVNSGHFNFHKPVVMSNSELKNLIESAGK"
     gene            1377..1658
                     /locus_tag="IBJ56_002810"
     CDS             1377..1658
                     /locus_tag="IBJ56_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaN family protein"
                     /protein_id="HAM3419044.1"
                     /translation="MANKKIDHREEAVELLKQDAKRILQLIKVQMDNLTLPQCPAYEE
                     VLDTQMYGLSREINFATRLGLIEPEEGKKLMSTLEKELSTLHELSMSKK"
BASE COUNT          678 a          302 c          350 g          548 t
ORIGIN      
        1 tattagaagt aagtagaaaa ggtggttagt atgatgaaaa aacgtataat tattcttgca
       61 gtattagtgg tacttcttat cggaggagtt gtaatcggtg tttatgcaag cggaaactct
      121 gcaaaagaca acaatgaaag caaaacaaca gctaaaaaag ccacatctac acctaagaaa
      181 gcaattgaca cagagaaaaa agaaacaaca accaaagaag cgacaacaaa agattccgta
      241 acggatgata aaggtgtagt cacaaaagga agctcagatg tagagaaaaa cgcaccggcc
      301 aaaaataata gtagtgcaac agataaaagc aatagtccaa ctacaccggc tttttcgtta
      361 tctagtacag gcttcaaaac ttccaatgta tcttctgttc ttggtggaac tgtaacaaca
      421 acgtatttgt cgagtgcccc atcattcgaa aaaatctttg aaaatttaac gattgaagtg
      481 aatcaatata aagtagagca tgttgttggt gcgaataaag cagttagtgc aagtaatcca
      541 gaaagctatt tagcaaataa aaacggctat gtaatcactt tagacatttc cattaaaaat
      601 acttctgcaa aagataaaat gtacaaagca gaccaaatta cacttatagg agcaaatgaa
      661 tttgtaggag gaagcttaga taattttgtt ccttctaatt ttcatcttat aggaagtaaa
      721 gcagatccaa atattttcac cgctggaaaa acagctcgtg ggcttcttac atttacaatg
      781 acagaagctg tgtacaatga tttagcagct gactcaaaaa taggtgttcc aaatcctgat
      841 aaatttgatg caagtgtttc tgaagctaat gcaggcgatg atgtagttgc ctcattccca
      901 gtaaaataaa aaaatccgcc cgataaaggg cggattttct ctattttcca gcactttcta
      961 ttaaattctt taactcacta ttcgacatta ctactggttt atgaaaattg aaatgaccag
     1021 aattaacgcg actgatagtg ttaatagcta ctcgatgttc acattcagga catagataca
     1081 ttctaatagg tttattacgt aattgttttg ttttaaattc gcgattgtct agctcatcta
     1141 cacgctcgca caagatacat tttgcgttca atttgtcttc acctcacaca agtattatag
     1201 catgattatc gaaaaaggcg agtaaaagtg aatttttcaa aaattttaat tagatcgtgc
     1261 ttgcgtggta aataaattat gctatactag tactatctag tattaacttt tacttaaggt
     1321 ttttccttga gatgaaaata aagcgctact tttggcgtat gatagggggt tctgtgatgg
     1381 caaataaaaa gatagatcac agagaagagg cagtggagct tttaaagcaa gacgcaaaac
     1441 gaatcttaca gttgattaaa gttcaaatgg ataatctaac attaccgcaa tgtccagcat
     1501 atgaggaagt tcttgataca caaatgtatg gtttatcacg tgaaattaac tttgcaaccc
     1561 gcctaggact aattgaacca gaagaaggca agaaactaat gtctacactg gaaaaagaat
     1621 tgtccacttt acatgaactg tccatgagta aaaaataatg aatcaattga aaagatgtct
     1681 gattttttct gacatctttt tttgtttgcc agcgaaagat taaaaaatga gccaaaagaa
     1741 ggaggcgatt cttcttttca tttggaggtc ttttccttta taataggaag aatagaaaac
     1801 aagatgggat agtaacttct cagggattgg acgatgccga tgtttaaacg aattttaaaa
     1861 tcttatgatt atgcattt
//
LOCUS       DABQVC010000291         1857 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.293,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000291 DABQVC010000000
VERSION     DABQVC010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.293"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..101)
                     /locus_tag="IBJ56_002811"
     CDS             complement(<1..101)
                     /locus_tag="IBJ56_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HAM3419045.1"
                     /translation="MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA"
     gene            complement(185..1105)
                     /gene="rarD"
                     /locus_tag="IBJ56_002812"
     CDS             complement(185..1105)
                     /gene="rarD"
                     /locus_tag="IBJ56_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HAM3419046.1"
                     /translation="MENKQNGQLGGIIAGALAYVCWGVLPIYWKLVTNVPPMEILAYR
                     IIWSFIFMLFLIVCLRKASMVFQETKDVLLKPKTLIAIIAAAFLVTANWYLFIYTVNS
                     GHVTEASLGYYINPLVNVLLATVILKERLSRGEIIAVISATIGVLILTWHLGSVPWAA
                     IGMAVTFSLYGLIKKVVSVSVWTGLTLETMIITPFALIYVIFFATNGLMQYAAQTNII
                     LVGAGVVTAIPLLLFATAAKKISYTMVGFLQYIGPTLMLALGVLLFKESFDHMQLFAF
                     MFIWLALIIFTISHIYSAAKIKQLANAAKK"
     gene            complement(1214..1744)
                     /locus_tag="IBJ56_002813"
     CDS             complement(1214..1744)
                     /locus_tag="IBJ56_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HAM3419047.1"
                     /translation="MTVEKWNVDPAHSSIEFQVKHMMVSKVKGAFSDFTADIEMDPED
                     LTSAKLNFSVAAASVDTRQAQRDGHLKSEDFFNVEKYPNVTFSATKITADGDDEYEVT
                     GDLTIRDVTKPLTLEVSYEGTGKDPNTGNMVAGFEAKGKFNRKDFGLNYNAALETGGV
                     LIGDEVKLNIQIEASK"
BASE COUNT          574 a          373 c          340 g          570 t
ORIGIN      
        1 gcgtttctaa caatggctgt tacttcgtga ccacgatttt ttgcttcttc taaaattctc
       61 gaaccagctc ggcccgtagc accaatgata ccaattttca tgaaaaaagc cccctattca
      121 tttttatgga atagattctc gtttgataga agaattattc ccgaaagagg ggactgggaa
      181 acatttattt ttttgcggcg tttgctaatt gtttaatttt ggctgcggaa taaatgtgag
      241 aaatcgtgaa aataatcagt gctaaccaaa taaacatgaa tgcaaacaat tgcatatgat
      301 cgaaactttc tttaaatagt aatacgccga gtgcgagcat taatgttggt ccgatatatt
      361 gcaggaagcc aaccattgta tagctaattt ttttcgcagc agtggcaaac agaaggagtg
      421 gtatagctgt aacgacacca gcgccaacta aaataatatt ggtttgtgcc gcgtactgca
      481 ttaatccatt ggtcgcgaaa aagattacat aaataagcgc gaatggcgta ataatcattg
      541 tctcaagggt taaaccagtc caaacagata cggaaacgac ttttttaatt agcccgtaaa
      601 gcgagaaagt aaccgccata ccgattgccg cccaaggaac agatccaaga tgccatgtga
      661 ggattaaaac accgatagta gcagaaataa cagcaataat ttcgccacga ctcaagcgtt
      721 cttttaagat aactgttgcg agaagtacgt ttacaagtgg attgatgtaa taaccaagac
      781 ttgcttcggt cacatgccca ctattcaccg tataaatgaa taaataccag tttgctgtca
      841 ctaaaaaagc tgccgcaata atcgcaatca gcgtttttgg tttaagcaat acgtccttag
      901 tttcttgaaa aaccatcgaa gcttttcgca aacaaacgat caaaaataac ataaaaataa
      961 aagaccatat aattctatag gccaaaatct ccattggtgg gacatttgtg actagcttcc
     1021 agtaaatcgg aaggacaccc caacatacat aagcgagagc gccagcgatg attccgccta
     1081 gctgtccatt ttgtttattt tccatagcga tgttagcccc ctttttttaa acaatagaac
     1141 tattttagct taaaaggggg aataaagcta caaaaaaaac tacgaatagg ctagctattc
     1201 gtagtttcca caattatttg cttgcttcga tttggatgtt taatttcact tcgtcgccaa
     1261 taagtacgcc accagtttct aacgcagcat tgtaattaag gccaaagtct ttgcggttga
     1321 atttaccttt tgcttcaaag ccagctacca tgttgccagt atttggatct tttcctgttc
     1381 cttcgtagct tacttctagt gtaagaggtt tggttacgtc gcgaatagtt aagtcaccag
     1441 tcacttcgta ttcatcatcg ccgtcagctg taatttttgt tgccgaaaaa gtcacgtttg
     1501 gatatttttc tacattaaag aagtcttcgc ttttcaaatg tccatcacgt tgcgcttgac
     1561 gagtgtcaac agaagcggct gcaacagaga agtttaattt tgcagaagtt aaatcttctg
     1621 gatccatttc gatatccgct gtgaaatcgc taaatgcacc ttttactttt gataccatca
     1681 tgtgttttac ttgaaattcg attgaactat gcgctgggtc tacgttccat ttttctactg
     1741 tcattgtttc attcctccaa atatgttttt ttataaaagc attctctttt aatctagcct
     1801 aaatcctaag aaattaaacc tgagaaaaaa tacttttacg ccttagaaaa gcaattg
//
LOCUS       DABQVC010000292         1816 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.294,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000292 DABQVC010000000
VERSION     DABQVC010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.294"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(175..378)
                     /locus_tag="IBJ56_002814"
     CDS             complement(175..378)
                     /locus_tag="IBJ56_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725347.1"
                     /note="Built to rescue LMOF2365_14255 during structural
                     annotation change regression; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin-like WGxF protein"
                     /protein_id="HAM3419048.1"
                     /translation="MKIIGISLVNSLLILLVVLIHKIFFRVLLLGYENLVIYWGSFVL
                     IYFILNLITNKILLPRGGIIENS"
     gene            complement(375..998)
                     /locus_tag="IBJ56_002815"
     CDS             complement(375..998)
                     /locus_tag="IBJ56_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3419049.1"
                     /translation="MIELVNVSKKIQDKLILEKVSLSIGAGEFIAVVGESGSGKTTLL
                     NVIGHLDSKDSGQVIINEMEYQPKKEVMTLKKEVLGFIFQNYLLMENETVLENLSITG
                     GKNRKLMIEHLEEVGMDESYLAKKVYQLSGGEKQRIAIVRILLKPFQLLLADEPTGNL
                     DDKNKHKIIELFLALKKQGKTIICVTHDPEISAKADRIIYIEGGEIR"
     gene            complement(991..>1816)
                     /locus_tag="IBJ56_002816"
     CDS             complement(991..>1816)
                     /locus_tag="IBJ56_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HAM3419050.1"
                     /translation="NVEKEAIISDKVLNIIVPNSKKGLEKDIKNTFLDYFYFQKVEVA
                     NIYNKALDLPAVALSKEDLSVNIIYAENNQDYFSYDSNTGDFRTGNITDPIAIVYTGN
                     IDSSSIGAHVTSSVYFIDKSNGDAFNAILPLISNSNAREITHVRSVYQEVSSEITTLK
                     WQIYQQLIGTIILALCLCSFMVLLVLSYYGENLYKQLIYHVFGYSFWKSSKWFSISNL
                     FVSVFSGILIFILSKEPVALYFSVVILIIELCAIYFIKEKAIYKDFKAILKGEKYD"
BASE COUNT          603 a          357 c          237 g          619 t
ORIGIN      
        1 caattctcaa acaaatcacc acctatttga agcaaaataa aaagagcaat accacacata
       61 tcagccaaaa aaactaatat ctggtattgc ccgcattacc ggtaacaagc ctcatggata
      121 tagtaccacc atatgaaatc gctgtcaatg ggttttgtta aaaccattct acccttaact
      181 attttcgatt attcctcccc taggtaacag tatcttattt gtaattaaat ttaaaatgaa
      241 atagattaaa acaaaggagc cccaatagat aaccaagttt tcatatccaa gcaataatac
      301 cctaaagaaa attttatgaa taagcaccac taagagtatt aaaagactat ttactaaaga
      361 aataccgata attttcatct tatttcgcct ccttcaatgt aaatgattcg atctgctttt
      421 gcagatattt ctgggtcatg tgtgacacaa atgattgttt taccttgttt tttcaacgct
      481 aaaaataatt caatgatttt gtgtttgttt ttatcatcca agttgcctgt tggttcgtcc
      541 gcaagtaata actgaaatgg tttgagtaaa atgcgcacaa tagcaatccg ttgtttttct
      601 ccaccgctta attggtatac tttttttgct aaatagcttt catccattcc tacttcttct
      661 aaatgctcta tcatcagctt gcgatttttt ccacctgtaa tggataagtt ttctaacact
      721 gtttcatttt ccatcaatag ataattttgg aatataaaac ctaacacctc tttttttaga
      781 gtcataacct cttttttcgg ctgatattcc atctcgttaa taataacttg cccactatct
      841 tttgaatcta ggtgtccgat aacattcagc agcgtggtct tcccactacc actctcgccg
      901 acgactgcaa taaattcacc agctccaata gaaagagaga ctttttccaa aatcaattta
      961 tcttgtatct ttttactgac attaactaat tcaatcatat ttttcacctt ttagtatggc
     1021 tttaaaatct ttataaatcg ctttttcctt tatgaaataa atggcacata gttctattat
     1081 gagaataaca acgctaaaat atagggcaac cggttctttg ctaagaataa aaatgaggat
     1141 tccagaaaaa acactcacaa acaaattgct tatactaaac catttactac ttttccaaaa
     1201 cgaatagcca aatacatgat aaattagttg cttatataag ttctccccgt aataggacag
     1261 tacaagaagt accataaaag agcataagca tagggctaag ataatcgtac ctatcaattg
     1321 ctgatatatt tgccatttca aagtagttat ttcgcttgaa acttcttgat aaacactcct
     1381 tacatgggta atttctcttg catttgaatt actaataagt ggtaagatag cgttaaaagc
     1441 gtcaccattc gatttatcaa taaaatatac agaagaagtt acatgagcgc caatactaga
     1501 tgagtcaata tttcccgtat atacaatcgc aattggatcc gtgatatttc cagtcctaaa
     1561 atccccagta ttactatcat aggaaaaata atcttgatta ttttctgcat aaataatatt
     1621 aacacttaag tcttccttac ttagcgccac agcaggcagg tctaaagctt tgttataaat
     1681 attcgccact tctacttttt gaaaatagaa gtaatcgaga aaagtgtttt ttatatcttt
     1741 ctctagtccc ttcttactat taggaacaat aatattcaaa actttatcac tgattatcgc
     1801 ttctttttcc acgttc
//
LOCUS       DABQVC010000293         1811 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.295,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000293 DABQVC010000000
VERSION     DABQVC010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.295"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            62..715
                     /gene="ppaX"
                     /locus_tag="IBJ56_002817"
     CDS             62..715
                     /gene="ppaX"
                     /locus_tag="IBJ56_002817"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrophosphatase PpaX"
                     /protein_id="HAM3419051.1"
                     /translation="MTGKITTLLFDLDGTLINTNELIIKTFQVTFQEFMPDRVFTRED
                     ILPFIGPSLMETFREINPAHADEMRAFYREYNLKHHDDLILEYDGVYEAIRALYEEDY
                     KLGIVSTKMYDTIMRGLKVTGLDKFFQVVIGLDQVSNAKPDPEGIEMALSLLNATKEE
                     AIMIGDNYHDIEAGKNAETLTAGVAWAIKGPEHLAQFQPDFMLEKMSDLLAIVRDEE"
     gene            719..1216
                     /locus_tag="IBJ56_002818"
     CDS             719..1216
                     /locus_tag="IBJ56_002818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAM3419052.1"
                     /translation="MRRLDRFKAPDDTVNTLFQVYKTISFWKVLKNTLVIELGRFFPW
                     MGGKRAIYRACLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLS
                     EYRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKE
                     KATLT"
     gene            1301..>1811
                     /locus_tag="IBJ56_002819"
     CDS             1301..>1811
                     /locus_tag="IBJ56_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAM3419053.1"
                     /translation="MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRA
                     SELEPGEAVILCQLAICYTEIGQFHKSNQLLREVLEQRNGNMEYCYYFIANNFAYMKD
                     YRRALQYANRYLDSSTDGEYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKE
                     INRYLAEEDS"
BASE COUNT          577 a          252 c          423 g          559 t
ORIGIN      
        1 gtagttaaaa agaaataaaa aagttggaga ttttcgagtt tgattaagaa aggaagaaat
       61 tatgactggg aaaattacta cattgttgtt tgacttagat ggtacgctta taaatacgaa
      121 tgaattgatt atcaaaacat ttcaagtgac atttcaagaa ttcatgccgg accgggtttt
      181 tactagagag gacattttac cgtttatcgg gccttcttta atggagactt tccgggaaat
      241 aaatccagcg catgcagatg agatgcgcgc tttttaccga gagtataatt tgaagcatca
      301 tgatgattta attttagaat atgatggagt ttatgaagca attcgtgctt tatatgaaga
      361 agattataaa cttggaattg tatcgacgaa aatgtatgat acgattatgc gaggtctcaa
      421 ggtaactggc ttggataaat ttttccaagt ggtgattggg ttagatcaag tgtctaatgc
      481 taaaccagat cctgaaggta ttgagatggc tctttcttta ttaaatgcga caaaagaaga
      541 agcgattatg attggcgata attatcatga tattgaagct ggaaaaaatg cggaaaccct
      601 aactgcgggt gtagcttggg cgattaaagg accagaacat ttggcgcagt ttcagccaga
      661 tttcatgtta gaaaaaatga gcgatttact cgcaattgtt agggacgagg aatagaattt
      721 gaggcggctg gataggttta aggcacccga tgatacagtc aacaccctat ttcaagtgta
      781 taaaacgatt tctttttgga aggttttgaa gaatacgcta gtaatagaac ttggtcgttt
      841 ttttccatgg atgggcggta agcgtgcaat ttatcgcgca tgtcttggaa tggaaattgg
      901 cgagaagact gccattgcct ataaagttat gccggattta ttttttccgg aaaagatttt
      961 gattggcgaa aactcaatta ttggttatca cacaactatc ttgacgcatg aatatttact
     1021 ttcggagtac cgtgttgggg aagttgtgat tggtcgggat gtgatggttg gcgcgaatgt
     1081 caccattctt ccgggcacag taattggaga cggggctgtg attgctgctg gggcggttgt
     1141 ctcggtggat gtcccggctg gtagttttgc ttatggaaat ccattaataa taaaagaaaa
     1201 agctactctg acgtaaaagt caaagtagct ttttttgtcg cccaaagtca taaattctat
     1261 gttatactca ttaggataaa ggtatcttgg aggtggaaaa atggaaaaag acaaaaaaac
     1321 acccgcaaaa atctatccat tttatccaaa tggtcagttt tattttgaac gcggtgtcga
     1381 agcgtttcgt gatcaaagaa ttaaagaagc aatcaggtat ttagtgcggg catccgaact
     1441 ggagccagga gaagctgtta ttctttgtca gctggcgata tgttatacag aaattggtca
     1501 attccataaa tcgaatcagc tacttagaga agttttagaa cagcgtaatg ggaacatgga
     1561 atactgttat tattttattg ctaataattt tgcgtatatg aaagattatc ggagagcgtt
     1621 acaatatgct aatcgttatt tggatagttc aactgatggt gaatataccg aggaagctaa
     1681 agatttaatt gaagttttat tagaagaaac gccttttggt gagacaattg aaaatggctt
     1741 ttctaaatta gaacaagaat tctattctta taaaaaagaa attaatcgtt atttagcaga
     1801 agaagatagt g
//
LOCUS       DABQVC010000294         1799 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.296,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000294 DABQVC010000000
VERSION     DABQVC010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.296"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..173
                     /locus_tag="IBJ56_002820"
     CDS             <1..173
                     /locus_tag="IBJ56_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419054.1"
                     /translation="SKEERDKFISTMNEQQRLMDKQNDMMGQQQQSIDSLSKSVGKLA
                     HKVDLLEHKITK"
     gene            186..464
                     /locus_tag="IBJ56_002821"
     CDS             186..464
                     /locus_tag="IBJ56_002821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HAM3419055.1"
                     /translation="MDFGKELLVYMTFLVVVTPVFVQAIKKTELIPSKWLPTVSILVG
                     AILGALATSLDGSGSLATMIWAGALAGAGGTGLFEQFTNRAKKYGKDD"
     gene            467..1330
                     /locus_tag="IBJ56_002822"
     CDS             467..1330
                     /locus_tag="IBJ56_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase family
                     protein"
                     /protein_id="HAM3419056.1"
                     /translation="MALTEAWLIEKANRKLNTSGMNKATSDKTRNVIKKMAKEGIYLC
                     VAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNFGVAVDLCLYTSDGKDVIWES
                     TTSRWKKVVAAMKAEGFEWGGDWKSFKDYPHFELCDAVSGEKIPTATQNTNPNRHDGK
                     IVDSAPLLPKMDFKSNPARMYKSGTEFLVYEHNQYWYKTYINDKLYYMYKSFCDVVAK
                     KDAKGRIKVRIKSAKDLRIPVWNNTKLNSGKIKWYAPNTKLAWYNNGKGYLELWYEKD
                     GWYYTANYFLK"
BASE COUNT          656 a          257 c          392 g          494 t
ORIGIN      
        1 agtcgaaaga agaacgagat aagtttatta gtacgatgaa cgaacaacag cgtttaatgg
       61 acaagcaaaa tgacatgatg ggccaacaac aacagtcaat tgacagtctg tcaaaatcgg
      121 ttggcaagtt agcgcataag gtagatttac tagaacacaa aattacaaaa taaaggatga
      181 tgaaaatgga ttttggaaaa gagttactag tttatatgac atttttagta gttgtaacgc
      241 ctgtttttgt gcaagcaatt aaaaaaacag agctaattcc ttcgaaatgg cttccaacag
      301 taagtattct tgtcggggcg attttagggg cattggcaac atctttggat ggttctggat
      361 cgcttgcaac gatgatttgg gcaggtgcat tagcaggagc gggcggaact ggtttatttg
      421 aacaatttac taatcgagct aaaaaatatg gaaaggatga ttaataatgg cattaacaga
      481 ggcatggcta attgaaaaag caaatcgcaa attgaatacg tcaggtatga ataaagctac
      541 atctgataag actcggaatg taattaaaaa aatggcaaaa gaagggattt atctttgtgt
      601 tgcgcaaggt taccgctcaa cagcggaaca aaatgcgcta tatgcacaag ggagaaccaa
      661 acctggagcg attgttacta atgctaaagg tgggcaatct aatcataatt tcggtgtagc
      721 agttgatttg tgcttgtata cgagcgacgg aaaagatgtt atttgggagt cgacaacttc
      781 ccggtggaaa aaggttgttg ctgctatgaa agcggaagga ttcgaatggg gcggagattg
      841 gaaaagtttt aaagactatc cgcattttga actatgtgac gctgtaagtg gtgagaaaat
      901 ccctactgcg acacaaaaca ccaatccaaa cagacatgat gggaaaatcg ttgacagcgc
      961 gccactattg ccaaaaatgg actttaaatc aaatccagcg cgcatgtata aatcaggaac
     1021 tgagttctta gtatatgaac ataatcaata ttggtacaag acgtacatca acgacaaatt
     1081 atactacatg tataagagct tttgcgatgt tgtagctaaa aaagatgcaa aaggacgcat
     1141 caaagttcga attaaaagcg cgaaagactt acgaattcca gtttggaata acacaaaatt
     1201 gaattctggg aaaattaaat ggtatgcacc caatacaaaa ttagcatggt acaacaacgg
     1261 aaaaggatac ttggaactct ggtatgaaaa ggatggctgg tactacacag cgaactactt
     1321 cttaaaataa aaagtcccgg tttgagctgg gctttttatt ttgaaagtga ctaacaaaaa
     1381 atgtaataaa aatgtaataa tccaagtaag ttgtataaaa tttgcagaat tagaacgttt
     1441 tattgataaa tacaccttat gaagagtatt tttggctata tttgcgcatt atagggttga
     1501 atgtaacact atatgtagaa ttcggtaatg ttgttatata caccatattg tgatataata
     1561 actgatttgt gtttatctat tgacaacgaa agtgggtatg ctataattgt gttaataaac
     1621 taaatgggcc gtctaaatgg ctaggaaaaa cctccacttt gtggaggttt ttttctttat
     1681 gttgtataat tattttgagg tgaaatgatg aacaaaactc aaaaaacata taaaccagat
     1741 aagccgttta aaaaagtaga ggatcagata gaaactttaa aaaaaagagg tttggaaat
//
LOCUS       DABQVC010000295         1798 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.297,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000295 DABQVC010000000
VERSION     DABQVC010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.297"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(175..>1798)
                     /gene="inlH"
                     /locus_tag="IBJ56_002823"
     CDS             complement(175..>1798)
                     /gene="inlH"
                     /locus_tag="IBJ56_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="InlH/InlC2 family class 1 internalin"
                     /protein_id="HAM3419057.1"
                     /translation="FKLVLMVAAILGISLYVTTSQGAEVRAESIAQPTPINVIFPDPA
                     LANAVKTATGKSNVTDTVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQI
                     TDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVAPLAGLSNLQV
                     LYLDLNQITDLSPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPL
                     ASLPNLIEVHLKDNQISDVSPLANLSNLFIVTLTNQTITNQPVYYQNNLVVPNVVKGP
                     SGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVAFKNTTVPFSGTVTQPLT
                     EAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGNKWDFSTDKMP
                     AENITLYAQFTINSYTATFDNDGKITTQKVTYQSLLEEPAAPTKAGYTFKGWYDAKTG
                     GTKWDFATGKMPAGNITLYAQFTKNDSPNPNDPTPNTPTGNGDGTSNPSDSGGNTTLP
                     TAGDENTMLPIFIGVFLLGTATLILRKTIKVK"
BASE COUNT          500 a          318 c          342 g          638 t
ORIGIN      
        1 taggactgtg tatgtattca tagctgaatt atttcattat aacttaatca aatttcgttt
       61 aatcactaga attagactca ttattgatta gttgtgacat ttagatgaat tcccctatta
      121 acaaaaaaca gctgaagtct ataaagaaac tataaaccgc agctgttttt gttgttattt
      181 cactttgatt gttttgcgga gaattagcgt tgctgtccct aacaagaaaa ctccgataaa
      241 aattggaagc atagtatttt cgtccccagc tgttggaagt gtggtattac cgcctgaatc
      301 acttggatta cttgtaccat caccatttcc tgttggggta ttaggagttg gatcatttgg
      361 atttgggcta tcatttttag tgaattgggc atatagtgta atatttcccg ccggcatttt
      421 accagtagca aaatcccatt tagttccacc cgttttagca tcgtaccaac ctttgaacgt
      481 ataacctgct ttcgttggcg ctgctggttc ttctaacaga ctttgataag tgactttttg
      541 cgtcgttatt tttccatcat tgtcaaatgt ggcagtatag ctattaatcg tgaactgcgc
      601 atacaatgtg atattttctg ctggcatttt gtccgtgctg aaatcccatt tattcccgcc
      661 agttttggca tcataccagc ctgtgaatgt gtaaccttct ttcgttggtg ctgttggttc
      721 tttaattaat tcattcgcgc cgactgtcac acttgtttgt tttccatcca catcaaaaac
      781 cgcagtgtaa gcttctgtta atggttgggt aactgttcca ctgaaaggaa ccgttgtatt
      841 tttgaaagcg actgattggt taaacgtgta gctaacatta ttaataaaac tagttaaatt
      901 ccatgttaaa tttggactag cgtatgttcc attgtcgcta atagtagcag gtgcaatagg
      961 cgcgccagaa ggacctttta ctacattagg aacgacaaga ttattttgat aatacacggg
     1021 ttggttggta attgtttgat ttgttaaagt gactataaat aagttcgata aattagcaag
     1081 tgggctgaca tcactaattt gattatcttt caaatgaact tctataaggt taggtaaact
     1141 cgcaagtggc gaaatatcac ttattttatt atcatcagct cttaaagtcg ttagtttaga
     1201 taaattagca agtggggtta aatcatttac ttggttattt ccgattgata agtattgtaa
     1261 attagttagt cctgcgagcg gacttagatc ggttatttga ttgaggtcca aatataatac
     1321 ctgcaaattg gaaagacctg caagtggagc cacatctgta atttgcgtag aagttaaatc
     1381 tagcgtttta atgctttgta acccagcaat tgcgctcaca ttttttaacg gatttccaga
     1441 taattcaagc tctgttattt tcgttaaatt tttaagagga gttaaatcag ttatttggtt
     1501 atctttaagt tctaacccta tcaaattatt taagtattgt attccttcta tcgttgttac
     1561 tccagtatta aatgctgata aagtagctat tccatctaaa tctgcttgcg taacagtgtc
     1621 tgttacatta gattttccag tcgctgtttt aactgcattc gcaagagccg gatcagggaa
     1681 aataacatta attggggttg gctgcgcaat gctttccgcg cgaacctccg caccttgact
     1741 tgtcgttaca tatagactaa taccgagaat agcagctacc attaaaacta gtttaaat
//
LOCUS       DABQVC010000296         1793 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.298,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000296 DABQVC010000000
VERSION     DABQVC010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.298"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(8..598)
                     /locus_tag="IBJ56_002824"
     CDS             complement(8..598)
                     /locus_tag="IBJ56_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3419058.1"
                     /translation="MRKEEIKQAALTLFANNGFEGTSLADIAGVVGLKKQSIYSHFKD
                     KDDLFLSIMKDAKSTEIDYYRAKLRDSDLSRPDLVLSSLLFGVKELYDTDEAYQFWLR
                     YGFYPPKHLYEVVQADITENVLQMEHEFTNLFSNWMEQKLIPMQDVETMKEAYMGILD
                     AVIVDIVYVNDPERTEKKITALWQIFWRGITLKALN"
     gene            complement(709..1752)
                     /locus_tag="IBJ56_002825"
     CDS             complement(709..1752)
                     /locus_tag="IBJ56_002825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAM3419059.1"
                     /translation="MKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKEYNPEVLENL
                     DEASQKFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRI
                     YTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPA
                     AVEDAYAALLWVQNHRTSLRAKSSDIIVAGDSVGGNLATVVTQIAKSKGKPNITAQIL
                     LYPATDIFSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYIANASDRKYDPLVAPIRS
                     KDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATD
                     ETYELISEFLEEK"
BASE COUNT          511 a          385 c          301 g          596 t
ORIGIN      
        1 tacacctcta attcaaagct tttagcgtaa ttcctctcca gaaaatttgc cataaagctg
       61 tgattttctt ttccgttctt tctgggtcgt tcacgtacac aatgtctacg ataactgcgt
      121 cgagaattcc catataagct tctttcatcg tttccacatc ttgcattgga attaactttt
      181 gctccatcca attgctaaat aaattagtaa attcatgttc catttgtagc acattctcgg
      241 taatatctgc ttggaccact tcatacaaat gcttcggcgg ataaaacccg taacgcaacc
      301 aaaattgata ggcctcgtcc gtatcgtata attccttcac accaaaaagt aaactagaca
      361 aaacaagatc tggtctggat aaatcactat cccgaagttt tgcccggtag taatctattt
      421 ctgttgattt cgcgtccttc ataatggata aaaacaaatc atctttatct ttaaaatgag
      481 aatagatgga ttgtttcttc agccccacaa cccctgcaat atcagcaagc gatgttcctt
      541 caaaaccgtt attagcaaaa agtgtcagtg cagcttgttt gatttcttct tttctcatca
      601 ttccactcct ctcgcaaaaa ctgacgaccg ttcgtaagtc attctctcac gaaaaaattt
      661 ctttgtcaac aaaaaaatcc actctaataa aagagtggat tcatggattt atttttcttc
      721 taaaaactcg ctaatcaatt cgtatgtctc atcggtcgct tctgagttag ttgtcatgaa
      781 gccatgtgga actttttcaa agcgtttggc aaatacttct acgccggcgt cttttaattt
      841 cttcgcatat gcttcccctt gatctctaag tggatcaaat tcagcagtcg caataaatgt
      901 ttttggtagt ccgactaaat ctttgctacg tattggtgca acgagtggat cgtatttacg
      961 atcgcttgca ttcgcaatat ataatttaaa gaatttatct aatgattctt tcgtaagcac
     1021 atagccttct gcaaattcat ccattgaagg ataaagaaca gacgcatcac gactgaaaat
     1081 atctgtcgct ggataaagta aaatttgagc agtgatattt ggtttacctt ttgatttagc
     1141 aatttgagtc acaacggttg ctaagtttcc tcctacgcta tctcctgcaa cgataatgtc
     1201 tgaggattta gctcgcaagc tagtacgatg attttgaacc catagtagcg cggcataggc
     1261 atcttccact gctgctggga atggattttc tggagcaagt cggtaatcaa cagtaacaac
     1321 gcgagcgcct gttgtttgaa caagttttct ggcaatcgcg tcatgcgttt gcagtccgcc
     1381 tagaacaaat ccgccaccat gatagtaaac gataatttca aaaggtccgt cttcttgcgg
     1441 cgtataaatt ctaattggaa ttttgccagc cgggccatca atttttttat tttcaacatc
     1501 gccaatttcg atatcttttg ctgaaggtaa tgcttttgtc gctagtctca tatatttata
     1561 tcgcgaatct acgtcggata atggtgaagt gtttttcaca aatttctgtg aagcttcatc
     1621 taaattctcc agtacctcgg gattatattc ttttttccca accgcttttt tgtaaataaa
     1681 gaaaacgatt aataatggaa gtagaatgat cccagcaaaa ccgatagcga tccattttat
     1741 tgtatttttc acattcgctc aactccttca atataacttc attaacaagt ata
//
LOCUS       DABQVC010000297         1772 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.299,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000297 DABQVC010000000
VERSION     DABQVC010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.299"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            22..1698
                     /locus_tag="IBJ56_002826"
     CDS             22..1698
                     /locus_tag="IBJ56_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HAM3419060.1"
                     /translation="MKKSKLFLTLGLTLLLSLVLVACGGGSDSKSDKKGSDSGKASGE
                     QVLNLTESALIPSADSTKADDQVGLNVVNQTNEGLYALDKDGIPAIAGAAEEPKVSDD
                     KTVYTIKLREDAKWSNGDPVTANDYVYSWRRAVDPNTAATYSYLFDAIKNGGDIVAGK
                     KKPEELGIKAVDDYTLEVTLSKPTAYINSLFAFPTFFPLNEKFVTEKGEKYAQNSDNM
                     LFNGPFELKDWTGTNKKWTYVKNDKYWDKDKVKLKQINVQVVQDSGTGLNLYNTDKVD
                     RTVLSADYAAQNKNNKDYVTVNDSSTFYIKFNQKRAGKDTVFANKNIRKAIALAIDKQ
                     SYTDTVLKNGSKPANNLVPEGFTFDPGNKEDYTKESGKHLEYDVKEAQKAWKAGLKEL
                     GVNEITVEFTSDDTENARKSSEFIQDQLQKNLDGLTVKLKNVPFKVRLQNDQNQDYDF
                     SMSGWGPDYQDPSTFLDLFVTDGAQNRMSYSNKDYDKILNDASVTYAADDQKRWDEMV
                     KAEKILLTDDVAIQPLYQRSTAYLQKDYIKNLQKNPFGPDYTYKETYLTK"
BASE COUNT          665 a          324 c          314 g          469 t
ORIGIN      
        1 taaaaaaggg aggtctactt agtgaaaaaa tctaaattat ttcttacact tggattaaca
       61 ctattactaa gcttagtctt ggtagcatgc ggaggcggat cagattccaa atccgacaaa
      121 aaaggctcag attcaggaaa agcttcagga gagcaagtac ttaacttgac agaaagcgca
      181 ctaattcctt ctgcagacag cacaaaagcg gatgaccaag ttggtttgaa cgttgtaaac
      241 caaacaaacg aaggtctata tgcgcttgac aaagatggta ttcctgccat tgccggtgct
      301 gctgaagagc caaaagttag cgatgacaaa acagtttata caatcaaact tcgtgaagat
      361 gcaaaatggt caaacggaga ccctgtaact gcaaatgact atgtttactc atggcgtcgt
      421 gcagttgacc ctaacactgc tgcaacatat tcttacctat ttgatgcaat caaaaacggt
      481 ggagatatcg tagctggcaa gaaaaaacct gaagaattag gaattaaagc agtagatgat
      541 tatactttag aagttactct atctaaacca actgcttaca ttaactcact attcgcattc
      601 ccgactttct tcccacttaa cgaaaaattc gttacggaaa aaggcgaaaa atatgcacaa
      661 aatagtgata acatgttatt caatggacct ttcgagttga aagactggac tggaacaaac
      721 aaaaaatgga cttacgtaaa aaatgataaa tattgggata aagataaagt taagttgaaa
      781 caaatcaacg tacaagttgt tcaagactcc ggtactggac ttaacttata caacactgac
      841 aaagttgacc gtactgtatt gagtgcagac tatgctgctc aaaacaaaaa caataaagac
      901 tatgtaacag tgaatgattc ttctactttc tacattaaat ttaaccaaaa acgtgctggc
      961 aaagatacag tatttgctaa caaaaacatc cgtaaagcta tagctcttgc gattgacaaa
     1021 caatcgtata ctgatacagt tcttaaaaac ggatctaaac ctgcaaacaa ccttgtacca
     1081 gaaggtttca cttttgaccc aggtaacaaa gaagattata caaaagaatc tggcaaacat
     1141 ttagaatatg atgtaaaaga agctcaaaaa gcttggaaag ctggtttgaa agaattagga
     1201 gttaacgaaa ttacagttga attcactagt gatgacactg aaaatgcgag aaaatcttct
     1261 gaattcattc aagaccaact acaaaagaac ttagacggtc ttacagttaa acttaaaaac
     1321 gtaccattta aagttcgttt acaaaatgac caaaaccaag attacgattt ctctatgagc
     1381 ggctggggtc ctgactatca agatccatcc actttcttag atctattcgt aactgatggt
     1441 gcacaaaaca gaatgagtta ttctaacaaa gactacgaca agattttaaa tgatgcttct
     1501 gtaacttatg cagctgacga tcaaaaacgt tgggatgaaa tggttaaagc agaaaaaatc
     1561 cttcttacgg atgatgtagc tattcaacca ctttatcaac gttctactgc atacctacaa
     1621 aaagactaca ttaaaaactt gcaaaaaaat ccatttggtc cagattacac ttacaaagaa
     1681 acatacttga ctaaataaaa tattagtctt taagaaatgc ttgacggaaa gagagagtat
     1741 atttcgatat gctctctcct tttgctgatg at
//
LOCUS       DABQVC010000298         1745 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.300,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000298 DABQVC010000000
VERSION     DABQVC010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.300"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>1745
                     /locus_tag="IBJ56_002827"
     CDS             <1..>1745
                     /locus_tag="IBJ56_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="teichoic acid biosynthesis protein"
                     /protein_id="HAM3419061.1"
                     /translation="IAFTQDKNSFTATISVDELASLSLPNNQTVWKFKVNNDYPYTHL
                     ITDGPIINKPFQPENSLYKYHFDFPEGILTLVSKPIELLASIEEYKLDSDVMSGSIKI
                     KSPLPSNQFNAKLIFKRRPTPSFYLFHEQQQSFDLGLITENIVNFSIPTKDLSTAFLV
                     DNTNILDAIIEVSSSHNKTGLSAFISIDADMKPAIPREIKIAAPLFATLRSYITGSNR
                     LSFYFKKNIQGLVSLSQLKETKKDLTLQFKLENSISEGQIVAKRADKKANTFEYNVEQ
                     VWPLKKGITKYTAQINKNEFLSGPINRADATWDFFLRSANMPDLPILAPNTIDFSSSG
                     FFNVANNEFMAQLTRNDSNNLACLTAVAPKIKQDITKIAVMGTCFSRNAFNSSPFFNP
                     DYKAFFECSFTQFHSSIISIMTEPANLINLDKYTDIKKSEKPFIEDDWKKDFFTNLKN
                     SDADYFLIDLYPDVIRPVIWLNNNSAITLSYVIEQSQLLNDISYERILDHIDNETYFN
                     EWKGYADQFIEKLTEIIPTDRVILNLGGFTTSYYDEDGEVATYKNKMAIEKNNYFWER
                     LNNYFLSKLPEAKVI"
BASE COUNT          627 a          304 c          253 g          561 t
ORIGIN      
        1 atattgcttt tactcaagat aaaaattcat tcacagctac tatttctgtt gatgaacttg
       61 ctagtctttc tctaccaaat aaccagactg tgtggaaatt caaagtaaat aatgattatc
      121 catatacaca tttaatcaca gatgggccaa ttataaataa acccttccaa ccagagaact
      181 cgctttacaa ataccatttt gattttcctg aaggtatttt aacacttgtc agtaaaccta
      241 tagaactact agcttcgata gaggagtaca aattagattc tgatgtgatg tctggttcta
      301 ttaaaatcaa gtcgccactt ccaagtaacc aatttaatgc aaagctaatt ttcaaacgta
      361 gacctacacc aagcttttat ttatttcacg agcaacaaca atcatttgat ttagggctta
      421 ttactgaaaa tatcgttaat ttctctattc ccaccaaaga tttatctaca gctttcttag
      481 tagacaatac aaatatacta gatgccataa tcgaagtatc atctagtcat aacaaaacag
      541 gcttatctgc attcatatcc attgatgcag atatgaagcc agctattcct agagaaatta
      601 aaatagcagc gccacttttt gcaactctgc gctcctatat tacaggctct aacagattat
      661 cattctattt caaaaaaaat attcaggggt tagtgagtct gagtcaatta aaagaaacta
      721 aaaaagattt gacactgcaa ttcaaattag aaaacagtat ctctgaaggt caaatagtag
      781 ctaaacgtgc agataaaaaa gcgaatacat ttgaatataa tgtagaacaa gtatggcctt
      841 taaagaaagg gattactaaa tatactgctc aaattaataa aaatgaattc ttatccggac
      901 caatcaatag agctgatgcg acatgggatt tcttccttcg ttcggcaaac atgccagatt
      961 tacctatttt agcgccaaat actattgact ttagttcttc gggatttttc aatgttgcta
     1021 ataacgaatt tatggcgcaa ttaacaagaa acgactccaa taatttagct tgtcttacag
     1081 ccgttgctcc taaaatcaaa caagatataa caaaaatagc tgtaatggga acttgtttta
     1141 gccgaaatgc ttttaactca tctccattct ttaatccaga ttataaagct ttttttgaat
     1201 gcagttttac gcagtttcat tcttctataa ttagtataat gaccgaaccc gctaacttaa
     1261 ttaatctaga taagtatact gatattaaaa aaagcgagaa accttttata gaagatgatt
     1321 ggaaaaaaga tttctttact aacctgaaaa attctgacgc tgattatttc ttaattgacc
     1381 tatatcctga tgttattcga ccagttattt ggttaaataa taattcagct attacattat
     1441 cttatgttat agaacaaagc caattactta atgacatttc ttacgagaga attttagatc
     1501 atattgataa tgaaacctac ttcaatgagt ggaaaggcta tgctgatcaa tttatcgaaa
     1561 aacttacaga aataattcct actgatcggg ttattttaaa cctaggtgga tttacaacgt
     1621 cttattatga tgaagatgga gaagtcgcaa cttacaaaaa caaaatggcc atcgaaaaga
     1681 ataattactt ctgggaacgt ttaaataatt atttcttatc taaattgcct gaagcaaaag
     1741 taatc
//
LOCUS       DABQVC010000299         1733 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.301,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000299 DABQVC010000000
VERSION     DABQVC010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.301"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(118..996)
                     /locus_tag="IBJ56_002828"
     CDS             complement(118..996)
                     /locus_tag="IBJ56_002828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HAM3419062.1"
                     /translation="MSEQITVNEKKITKSDLMGVFIRSNLFQGSWNFERMQSLGFCFS
                     VIPVIKRLYPEKGPEREQAIKRHLEFFNTHPYMAAPILGVTTAMEEQKANGADIDDGA
                     INGIKVGLMGPLAGVGDPIFWGTVRPVLAALGAGFATDGSIIGPILFFVLFNAIRLGF
                     RYWGVFYGYTKGTDVVSDMSGGLLQKLTEGASILGLFVMGALVNKWTTIYVPLVAYTT
                     EDSKTGKDVPTTVQSILDQLMPGLLALLLTFACMWILKKKVNALWLILGLFVVGILGY
                     WSGILGLPPAGYSPLG"
     gene            complement(1014..>1733)
                     /locus_tag="IBJ56_002829"
     CDS             complement(1014..>1733)
                     /locus_tag="IBJ56_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HAM3419063.1"
                     /translation="ACTLIGLVLGDITTGIIIGGTLEMIALGWMNIGAAVAPDAALAS
                     IISTILVITGGQDISVGISLAIPLAALGQVLTILVRTITVAFQHMADKAGKEGNLRSL
                     DWIHVTALLLQAMRIAIPAVIVAVTVGTQAVENLLNAIPDVIVNGLNVAGGFIVVVGY
                     AMVINMMSAKYLMPFFFLGFVVAAFTAFNLVALGVLGLVAAIIYIQLNPKYQLKEAIQ
                     QYGGGGGGRSADDDLDDDLDD"
BASE COUNT          540 a          382 c          343 g          468 t
ORIGIN      
        1 gaagaggggg aactgggttt gaggataatc atttagagag gctctttcgg cacgataaga
       61 cacaaaaaag aaccggaatt ttaatcccgg ttcttttcga attattataa ccacccatta
      121 cccaagtggt gaataaccag ctggtggaag tcctaagata ccagaccagt aacctagaat
      181 accaacaacg aatagtccta aaatcaacca taaagcattg actttcttct tgagtatcca
      241 catacaagcg aatgtgagta gaagggcaag aagacctggc attaattggt ccaagatact
      301 ttgaacagta gttggaacgt ctttaccagt tttagagtct tctgttgtat aagctactag
      361 tggaacatag attgtggtcc atttattaac aagggcaccc atgacgaata gtccaagaat
      421 ggaagctcct tctgttagtt tttgaagcaa accgccagac atatcagata caacatctgt
      481 accttttgta tatccgtaga acacgcccca ataacggaaa cctagacgaa ttgcattaaa
      541 tagtacgaag aataaaattg gtccgatgat actaccgtca gttgcaaacc ctgcacctaa
      601 agcggcaagt actggacgaa ctgttcccca gaaaattgga tccccaacgc cggcaagtgg
      661 tcccattaga cctactttaa taccattgat tgcaccgtcg tcgatatcag caccattggc
      721 tttttgttct tccatcgcgg ttgttacacc taagatagga gcggccatat atggatgcgt
      781 attaaagaac tcaaggtgac gtttgatagc ttgttctctt tcaggtcctt tttcaggata
      841 aagacgttta attactggaa ttactgagaa acagaatcct agagattgca tacgttcaaa
      901 gttccacgac ccttggaaga ggttggaacg tatgaacacg cccattaagt cacttttcgt
      961 tattttcttt tcattaactg taatttgttc actcatattt ttctccccct tccttagtcg
     1021 tcaaggtcgt cgtcgagatc atcatccgct gatcgtccgc cgccgccccc gccgtattgt
     1081 tggatagctt ctttcaattg atatttaggg tttagttgga tataaatgat tgctgcaact
     1141 agtcctaaaa cacctagtgc tactaagtta aacgcagtaa atgctgcgac aacaaaacct
     1201 aagaagaaga aaggcattaa atatttagcg gacatcatgt taataaccat ggcgtaacca
     1261 acaacaacga taaatccacc agctacgttt agaccattaa caataacgtc cggaatggca
     1321 ttgagtaaat tttcgactgc ttgtgtacca actgttaccg caacgataac ggctggaatt
     1381 gcaatacgca tagcttgaag tagtagtgct gtaacatgta tccagtcgag acttcgcaga
     1441 ttaccttcct taccagcttt atcagccatg tgttggaatg caactgtaat tgtacgaact
     1501 agaattgtaa gtacttgacc aagagcagct agaggaatcg caagcgaaat acctacgctg
     1561 atatcttgtc ccccagtaat aactaagata gtagaaataa tggatgcaag ggcagcatct
     1621 ggagcaaccg cagctccgat attcatccat ccaagcgcga tcatttcaag tgttccccca
     1681 ataataatac cagttgtaat atccccaaga acaagaccaa ttaacgtaca ggc
//
LOCUS       DABQVC010000300         1661 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.302,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000300 DABQVC010000000
VERSION     DABQVC010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.302"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>1661
                     /locus_tag="IBJ56_002830"
     CDS             <1..>1661
                     /locus_tag="IBJ56_002830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010821418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HAM3419064.1"
                     /translation="RTSQYLLVKAPPASGKSRALMFVALDKLANQGIKKVIIAVPERS
                     IGKSFQTTELAKFGFFSDWIINPKNNLMDRGTSESKVSQFVNFIRSTNSEDNIMVCTH
                     ATLRFAFEKLNDSDFDNVLLAIDEFHHVSQDDNSVLGNAMRKIMGNSSAHIIAMTGSY
                     FRGDSVPILESTDEQKFDKATYTYFEQLEGYKYLKSFAMGYSFYRGRYTDALSEVLDT
                     SKKTIIHIPNVNSGESTKDKYDEVDRILEELGDAKFDEKSGIWLLTGKYGRVLKIADL
                     VNEEGREKVQEYIRNMSKLDDLDIIIALGMAKEGFDWPFAEYALTIGYRNSLTEVVQI
                     IGRVTRDSSNKTHAQFTNLIAQPDAQDDEVMFAVNNVMKAITASLLMESVLAPNFNFK
                     RKDNDDQKSKGTEIFIKGLKETSTERSKNIIQNDLNDLKATILQDSQIQQAIAAGVSA
                     KVINKQLVLRVIMNTYPDLSNDETEEVRQHLVAQAVIQSAEHEEGTGGNQFLRMANKF
                     INIDEIAIDLIDEVNPFQRAYEVISKEIDAPTLRFIQDYMDGIKF"
BASE COUNT          567 a          262 c          318 g          514 t
ORIGIN      
        1 acgtacatct caatatctat tagttaaagc tccccctgca tcagggaaat cacgcgcttt
       61 gatgtttgta gctttggata agctcgcaaa tcaaggcata aaaaaagtaa ttattgcagt
      121 tccagaacgt tcaattggaa aatcttttca aaccacagaa ctagcaaaat tcggcttctt
      181 ctctgattgg attattaatc ccaaaaacaa tctcatggat cgtggaacaa gtgaaagtaa
      241 agtgtctcag tttgttaatt ttattcgttc aacaaactca gaagataata ttatggtttg
      301 cacccacgcg actctacgtt ttgcttttga aaaattgaat gattctgact ttgacaatgt
      361 tttacttgcc attgatgagt ttcatcatgt atcacaagat gataattctg ttcttggtaa
      421 tgcgatgcgt aaaattatgg gaaattcttc tgcgcatatc attgcaatga caggttccta
      481 ctttcgaggt gattcagtac caattttaga gtctactgat gagcaaaaat ttgataaggc
      541 aacctatact tattttgaac aacttgaagg ttataaatat ctaaagagtt ttgcaatggg
      601 ctatagcttt tatcgaggtc gttatactga tgcactttca gaagttttgg atacctcaaa
      661 gaaaacaatt attcatattc caaatgtaaa ttccggcgaa tccaccaaag ataaatatga
      721 tgaagttgac cgtattctag aagaattagg tgatgcaaaa tttgatgaaa aatcagggat
      781 ttggctacta actggaaaat atggacgagt attaaaaatt gctgatttgg ttaatgaaga
      841 aggtcgtgaa aaagttcaag aatatatccg aaatatgtct aaactagatg acttggacat
      901 tattattgca cttggtatgg caaaagaggg atttgactgg cctttcgcag aatatgcttt
      961 aacaattggt tatcgtaatt cattaactga agttgtgcaa attattgggc gcgtgactcg
     1021 tgatagttca aataaaactc atgcacaatt taccaattta attgctcaac cagatgctca
     1081 agatgatgag gtcatgtttg cggttaataa tgtcatgaaa gcaatcactg caagtctttt
     1141 gatggaatct gtattagctc caaactttaa ctttaagcgt aaagataatg atgaccaaaa
     1201 atcaaaagga acagaaatat tcatcaaagg tttaaaagag accagtactg agcgttcaaa
     1261 aaatattatt caaaacgatt tgaatgactt gaaagcgact attttacaag acagtcaaat
     1321 tcagcaagct attgctgccg gtgtaagtgc aaaagtgatt aataagcaac ttgtactgcg
     1381 agtgataatg aatacctatc ctgatttgtc aaatgatgag actgaggaag ttcgtcagca
     1441 cttagttgca caagctgtca ttcagtctgc ggaacatgaa gaaggaacag gcgggaatca
     1501 atttcttaga atggcgaata aatttataaa tattgatgaa attgcaattg atttgattga
     1561 tgaagtaaat cccttccagc gtgcctatga ggttatttca aaggaaattg atgcaccaac
     1621 tttacgcttt atccaagatt atatggatgg tataaaattc a
//
LOCUS       DABQVC010000301         1637 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.303,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000301 DABQVC010000000
VERSION     DABQVC010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.303"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..921
                     /locus_tag="IBJ56_002831"
     CDS             <1..921
                     /locus_tag="IBJ56_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3419065.1"
                     /translation="YTLKRVLYMLITLFIIASVTFVLMKFLPGTPYRNQEKLSDEQIH
                     MMNEKYGLNDSIPVQYLNYMTGLVKGDLGVSFQLDNRPVSEILSALIGPSVQLALEAM
                     AFGVIFGILLGVIAAMYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPV
                     AGWGTFADTILPAFALAMFPLATAARFMRTELIDVFASDYVLLAKAKGNSRTEVAVKH
                     AIRNALIPLITVLGPLSVALMTGSLVIENIYSIPGIGSQFVSSIQTNDYPVIMGTTIL
                     FAVMLVFVILVVDILYGLIDPRIRVSGGRK"
     gene            921..>1637
                     /locus_tag="IBJ56_002832"
     CDS             921..>1637
                     /locus_tag="IBJ56_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3419066.1"
                     /translation="MAEHKIAKERFQPAHILDAEAEKINRPSLTFLQDSWLRIRKNKA
                     ALVSLIVLALVIIMAIVGPYLSQNLGPKHDINRQITENASLPPKVQGFENMPFWNGHQ
                     SIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALCDLIIG
                     VAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLILEPGIVSIIIAIAMTSWI
                     TMARVVRGQVLKLKNQEFVMA"
BASE COUNT          474 a          265 c          339 g          559 t
ORIGIN      
        1 tatacgttaa aaagagtatt atatatgctt ataacgttat tcatcattgc ttcggttacg
       61 tttgttctta tgaaattctt acctggtacg ccttaccgta atcaggagaa actatctgac
      121 gaacaaattc acatgatgaa tgaaaaatat ggactaaatg attcaattcc agtccaatac
      181 ttaaattata tgacaggttt ggtaaaaggt gacttaggtg tttccttcca acttgataat
      241 agaccagtgt ctgagatttt aagtgcactg attggtccat ctgtccaatt agcactcgag
      301 gcaatggctt ttggtgttat ttttggtatt ttactagggg taatagcggc catgtatcag
      361 aataggtggc cggattatac gagtacattt atagcaatat taggtaagtc agttccatct
      421 ttcgtatttg cgactgtttt acaatactgg cttggagcaa aacttcaaat tttcccagta
      481 gcaggttggg gtacgtttgc agatactatt ctgccagcat tcgcacttgc gatgttcccg
      541 cttgcaacag cagctcgttt catgagaaca gagttaattg atgtatttgc atctgattat
      601 gttctactag ccaaagcgaa agggaatagt agaacggaag tagcagttaa acatgcgatt
      661 cgtaatgcac ttattccttt aattacagtt ttaggaccat tatcagttgc actgatgact
      721 ggttcccttg ttattgaaaa tatttatagt attcctggta tcggtagcca attcgtttct
      781 tctattcaaa caaatgacta tccagttatt atgggaacta caattttatt tgctgtcatg
      841 ttggtatttg ttatcttggt agtggatatt ctttacggat tgattgatcc tcgaatccgt
      901 gtgtctggag gtagaaaata atggcagaac ataaaattgc aaaagaaaga tttcagccag
      961 cacacattct ggatgcagaa gcagagaaaa ttaatcgtcc aagtttaact ttcttgcaag
     1021 attcttggct tcgtattcgt aaaaataaag cggctttagt ttctctaatt gtattagcac
     1081 ttgttattat catggcaatt gttgggcctt atttatcaca aaatctagga ccaaaacatg
     1141 atattaaccg acaaatcact gaaaatgcga gtcttcctcc aaaagttcaa ggctttgaaa
     1201 atatgccttt ctggaatggt catcaatcta ttggtggaga agatgttgat atttataaac
     1261 aaaataatat taaagagggt acttactact ggttaggtag tgatacgctt ggacgtgacc
     1321 aatttgctcg tatttgggct ggtacacgtg tatctcttat tattgctgtt gtagcagcgc
     1381 tttgtgacct tataattggg gttgcttacg gtttgatttc tggttatgtt ggaggccgtg
     1441 tagataattt catgcaacgt gttttagaag ttattggtgc aattccaaac ttagttgtgg
     1501 ttattttaat gatgttaata ctcgaaccag gtattgtatc tattatcata gcaatcgcaa
     1561 tgacgagttg gataacgatg gcccgggtag tcaggggaca agttttaaaa cttaaaaacc
     1621 aagaatttgt tatggct
//
LOCUS       DABQVC010000302         1634 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.304,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000302 DABQVC010000000
VERSION     DABQVC010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.304"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            18..1223
                     /locus_tag="IBJ56_002833"
     CDS             18..1223
                     /locus_tag="IBJ56_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HAM3419067.1"
                     /translation="MESVFMFFCTLLVWLMTPGIALFYGGMVRRKNVLSTAMYSFSSM
                     AIISILWVIVGYSLAFAPGNGFIGSFDWTFLHNVGFAANDTYSDAIPHILFMMFQMTF
                     AILTVAIISGAFAERMNFSAYLIFIILWSLLVYSPVAHWVWGDGGWLRNLGALDFAGG
                     NVVHISSGVTGLVLAIMIGRRKEADSASPHNLPLALIGGILVWFGWYGFNVGSALTID
                     NVAMIAFVNTNTAAAAGIIGWGLVEWLTNKKPTMLGTISGAIAGLVSITPAAGFVTVP
                     SSLIIGFLGGALCFWAVFWLKGKVKYDDALDAFGLHGIGGIWGGIATGLFATTKVNEA
                     GADGLFYGNASLVVKQLIAIGSTVAYVAIATAIIVVIIKLFLPIRVNEEQEYKGLDLT
                     LHGEKAYQE"
     gene            1237..1602
                     /locus_tag="IBJ56_002834"
     CDS             1237..1602
                     /locus_tag="IBJ56_002834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HAM3419068.1"
                     /translation="MSGLTKIEIITRPNRFHLFQKELAKIGVSGLTVTKALGTGLEKG
                     FIELYRGTKKESNIHERMKIEIVVSTVPVEDVLRVVKETLRTGEPGDGKVFIYPLAEV
                     VKISTGETGIDALQDKPSK"
BASE COUNT          459 a          289 c          373 g          513 t
ORIGIN      
        1 aaaaaggaga gttgagtatg gaatcagtat ttatgttctt ttgtacttta ttggtttggt
       61 taatgacacc aggtattgca ttattttacg gtgggatggt tcgacgcaaa aatgtgttga
      121 gtacggccat gtatagtttt agttcaatgg caattatatc tatcctttgg gtgatagttg
      181 ggtattcatt agctttcgcc cctggaaacg gctttatagg aagttttgac tggaccttcc
      241 tccataatgt tggcttcgca gcaaacgata cttactcaga tgctattcca catattctat
      301 tcatgatgtt tcaaatgact ttcgcaattt tgactgtagc tatcatttct ggggcatttg
      361 cagaaagaat gaatttctcc gcttatttga ttttcattat cttatggtcg ttacttgttt
      421 attcccctgt tgctcactgg gtttggggtg acggtggttg gttacgtaat ctcggcgcac
      481 ttgatttcgc cggtgggaat gtcgttcata ttagttcagg tgtaacaggg ttagttcttg
      541 caattatgat tggacgtaga aaagaagccg attctgcttc acctcataat ttacctttag
      601 cgcttattgg tggtattcta gtttggtttg gttggtatgg ttttaatgtt ggtagcgccc
      661 ttacaattga taatgtggct atgatagctt ttgttaatac gaatacagct gctgctgcag
      721 gtattatcgg ttggggtttg gttgaatggt tgacgaataa aaagccaact atgcttggaa
      781 ccatttccgg agcaattgct ggtttagtat ccattacccc tgccgctgga tttgttaccg
      841 ttccaagttc acttatcatt ggtttcctcg gcggagcact atgcttctgg gctgtgttct
      901 ggttgaaagg aaaagtaaaa tatgatgatg cacttgatgc attcggactt catggaatcg
      961 gaggtatttg gggtggtatc gcaaccggcc ttttcgccac aacaaaagta aatgaagctg
     1021 gagcagacgg attattctac ggcaatgctt ctctcgtagt aaaacaatta atcgccattg
     1081 gttcaacggt agcatatgtg gctatagcga cagcaataat cgtcgtaatt atcaaactat
     1141 ttttaccaat ccgtgtaaac gaagaacaag aatataaagg acttgatttg acgctgcacg
     1201 gcgaaaaagc atatcaagaa taaaggaggc aacaatatgt ctggattaac aaaaattgaa
     1261 atcattactc gcccaaaccg ctttcacttg tttcaaaaag aacttgcgaa aatcggcgtg
     1321 agcggcttaa ctgtcacaaa agcactcggt acagggttag aaaaaggatt tatcgaactt
     1381 tatcgcggta caaaaaaaga aagcaatatt cacgagcgaa tgaaaattga aatcgttgtt
     1441 tccactgtcc cggttgagga tgtacttcgt gtcgttaaag aaacgctacg tactggcgaa
     1501 cccggcgacg gaaaagtatt tatttaccca cttgcagaag tcgttaaaat cagcactggc
     1561 gaaaccggaa tcgacgcatt acaagataaa ccatcaaaat gaatagttaa aatggtgaat
     1621 taattaaaaa tggg
//
LOCUS       DABQVC010000303         1625 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.305,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000303 DABQVC010000000
VERSION     DABQVC010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.305"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(318..>1625)
                     /locus_tag="IBJ56_002835"
     CDS             complement(318..>1625)
                     /locus_tag="IBJ56_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HAM3419069.1"
                     /translation="ESEAKWVKEITDLEKSGMVILNDAFLSRFHGKNTTIELEAQLAN
                     PWITREYDREREKLFYLALQVNKYFILTSEKVKSNLVNLGYLWNFKKNSDKEFCYFSE
                     RDRKNCFKELLNTIFLLTPVISTTFASVSRFLADVEEPESLGQLIIDEAGQATPQMAV
                     GALWRFKKAIVVGDPKQVEPVVTEDVKLLLELFAKEEFSWYKSRVISVQTFADSVNYI
                     GSFLSSNDRTEKQWVGCPLVIHRRCLNPMFSISNELAYNNTMLFQTAEPKEAIEKNLV
                     ESNSLWISIDGNEIGNKNHHVPEQVKKAVMVVEKAFEKQEGQADMYIISPFTSVIRGF
                     VQEAKKSSILKKYAKANFESWLNTHCGTVHKFQGKEAGEVIFLLGCDASAMGAVNWVN
                     ENIVNVAVTRAKYRLYVIGDANVWKKNPSLLVLQNRLEIISSN"
BASE COUNT          508 a          332 c          210 g          575 t
ORIGIN      
        1 atcgccattc tttttagcga tttggtttgt tctattaatc aatattcttt tattatgacc
       61 attcttctct cttcccctct taagtaagag ccattttaaa aaggccaaag ataatactga
      121 taggactaaa aaaataccta gaataaagta tattaacgta tcacttactt tatttgtttg
      181 cattttgatt tgtaaactaa atagtatata ggcgggtaac atcgctgtca caaaatatgt
      241 tattttaaac aaaaaacttg taccttcaaa aatcactatt caactccttt ttcataagac
      301 ctatgcgatt atttgctcta attactagat attatctcta acctattttg caacacaagc
      361 aaagaaggat tcttcttcca gacattagca tctccaataa catataatcg atatttagct
      421 cttgttacag caacatttac aatattttcg ttcacccaat taaccgcacc cattgcacta
      481 gcatcacatc ctagtaaaaa gattacttct ccagcctctt ttccttggaa tttatggact
      541 gttccacaat gagtattgag ccatgactca aaatttgcct tagcatattt ttttagtata
      601 gatgattttt tagcttcttg tacaaatcct cttattactg atgtaaaagg agaaataata
      661 tacatatcag cttgaccttc ctgcttttca aatgctttct cgactaccat tacagccttt
      721 ttcacttgtt ctggtacatg atggttttta ttacctattt catttccgtc aattgaaatc
      781 cacaatgagt ttgattcaac taaatttttt tcaattgctt ctttaggctc agctgtttga
      841 aaaagcattg tgttgttata agccagttca tttgaaatag aaaacattgg atttaaacag
      901 cgtcggtgaa taactaatgg gcaacccacc cattgctttt cggttcgatc attagaagaa
      961 agaaaacttc caatataatt cacgctgtca gcaaaagtct gtacagaaat caccctgctc
     1021 ttataccaag aaaattcttc ctttgcaaat agctctaata aaagtttaac atcttcagtt
     1081 actaccggtt ccacttgctt agggtcaccc acaacaatag cttttttaaa tcgccaaagt
     1141 gcaccaacag ccatttgggg agtagcctgt ccagcttcat caataattaa ttgccctaaa
     1201 ctttccggtt cctctacatc ggctaaaaac ctgctaacag aagcaaatgt tgttgaaata
     1261 actggtgtta atagaaaaat tgtatttaac aactctttaa aacaattctt tctatctcgc
     1321 tcggaaaaat aacaaaattc cttatcacta ttcttcttga aattccacaa gtagcctaga
     1381 ttaacaaggt ttgatttcac tttttctgaa gttaaaataa aatatttatt cacttgtaaa
     1441 gctaaataga atagtttttc tctttctcga tcatactctc ttgttatcca aggatttgca
     1501 agttgcgctt ccaattctat agttgtattt ttcccatgaa atcgggaaag aaatgcatca
     1561 tttagtatta ccatcccact cttctctaaa tcagttatct cttttaccca cttggcctca
     1621 gattc
//
LOCUS       DABQVC010000304         1579 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.306,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000304 DABQVC010000000
VERSION     DABQVC010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.306"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(73..1488)
                     /locus_tag="IBJ56_002836"
     CDS             complement(73..1488)
                     /locus_tag="IBJ56_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HAM3419070.1"
                     /translation="MHTNTGFPANFLWGGAAAANQFEGAYNVDGKGLSVQDVTPKGGF
                     GHITDGPTPDNLKLEGIDFYHRYKDDVKLFAEMGFKVFRTSIAWSRIFPNGDETEPNE
                     AGLQFYDDLFDELLAHNIEPLITLSHYETPLHLSKTYDGWVNRKMIDFYENYVRTVFN
                     RYKGKVKYWLTFNEINSILHAPFMSGGISTSPDKLSQKDLYQAVHHELVASALATKIG
                     HEIMPEAQIGCMVLAMPTYPLTSNPDDIIAVMEAERKNYFFSDVHVRGTYPGYMKRYF
                     RENNIELDVTEEDLEILKNTVDFISFSYYMSTTETADESKRKAGAGNILGGVQNPYLE
                     ASEWGWQIDPQGLRVVLNEFWDRYQKPLFIVENGLGAIDQLEKDENGNYTVNDDYRIN
                     YLSAHLSQVKEAIKDGVDLMGYTSWGCIDLVSASTAEMKKRYGFIYVDRNNDGTGTLN
                     RYKKKSFDWYKNVIATNGEDL"
BASE COUNT          426 a          309 c          335 g          509 t
ORIGIN      
        1 agtaaattga aatcggatta ataaaaaccc aggttacccc tcttaaaaag ggcaaacctg
       61 ggtttctcat ttttataaat cttcaccatt ggtagcaata acgttcttgt accaatcaaa
      121 acttttcttc ttataacggt ttagcgtacc tgtgccgtcg ttgttgcgat cgacatagat
      181 aaagccgtaa cgttttttca tttcagcagt ggaggcactt acaaggtcaa tacagcccca
      241 tgaagtgtaa cccatcaagt caacgccatc tttaatcgct tctttcactt gcgataaatg
      301 agcgctcaaa taattaatac ggtagtcatc atttactgtg tagttgccgt tttcgtcttt
      361 ttctagttga tcgatagcgc caagaccgtt ttctacgatg aaaagtggtt tttggtatct
      421 atcccagaat tcgtttagga caacgcgcaa gccttgaggg tcgatttgcc agccccattc
      481 ggatgcttct aggtaagggt tttgtacgcc gcctaggatg tttcctgcgc cagctttgcg
      541 ttttgactcg tcagctgttt cggttgtgct catgtaatag ctgaaggaaa tgaaatctac
      601 tgtgttttta aggatttcta ggtcttcttc tgttacgtct aattcaatat tattttctct
      661 gaaatagcgt ttcatgtagc ccggataagt tccgcggaca tgaacatcgg agaagaagta
      721 gtttttgcgc tctgcttcca taacagcgat aatatcatct gggttggaag ttagcggata
      781 agttggcatt gctaggacca tgcagccgat ttgggcttcg ggcatgattt cgtgaccaat
      841 ttttgtagcc agcgcgctcg ccacaagttc gtggtggaca gcttgatata agtctttttg
      901 agataattta tctgggcttg tagaaatacc gccgctcatg aatggtgcgt gtaaaatgga
      961 gttgatttca ttgaaagtga gccaatattt tactttgcct ttgtagcgat taaacacggt
     1021 gcggacatag ttttcataga agtcgatcat ttttctattt acccagccgt cgtaagtttt
     1081 cgataagtga agtggtgttt catagtgaga taaagtaatc agtggttcga tattatgtgc
     1141 tagaagttca tcgaataaat catcgtaaaa ttgtaatcct gcttcgtttg gctcagtttc
     1201 gtcaccattt gggaagatac gggaccaagc gatggaagta cggaaaacct tgaagcccat
     1261 ttcggcaaaa agtttcacgt catctttgta gcgatgatag aagtcaattc cttctaattt
     1321 taagttatct ggtgttggac cgtcagtaat gtgaccaaat ccgccttttg gagtaacatc
     1381 ttgaacggaa agtccttttc catcgacgtt gtaagcgcct tcgaattggt ttgcagcagc
     1441 agctccaccc cataaaaagt tggctggaaa tcctgtattt gtatgcatgt taaaaactcc
     1501 ttttctacat tttaaagtat ctatgaaaaa aaccaaatac ttttctaaat acatgcaaaa
     1561 aaacacggta cttagaaaa
//
LOCUS       DABQVC010000305         1516 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.307,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000305 DABQVC010000000
VERSION     DABQVC010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.307"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..242
                     /locus_tag="IBJ56_002837"
     CDS             <1..242
                     /locus_tag="IBJ56_002837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419071.1"
                     /translation="LLPHAIKKQDNPQKKDLLIRFFFILLDNAKLAQSYFGSGMLADL
                     MMHLNSSLQKKLAKHPKLSTILSPLEIENLKREIE"
     gene            318..632
                     /locus_tag="IBJ56_002838"
     CDS             318..632
                     /locus_tag="IBJ56_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419072.1"
                     /translation="MTEIKYLEGMYQDPFFPPFLVDKIKQCILDTVQFLEQGNHDTEA
                     IQAKFDEMTLAINALQDEFYENESELETGARDSIAETIIPILAHYKIDIDIEELLRER
                     EW"
     gene            775..>1516
                     /locus_tag="IBJ56_002839"
     CDS             775..>1516
                     /locus_tag="IBJ56_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HAM3419073.1"
                     /translation="MVTIGLTGWSDHDSLLQTKKLTLADYAAHFPVVEVDTSFYAIPS
                     PRTTANWAAQTPDEFHFVIKAFSAMTKHKEWSQYFDSENAMYTAYMDMIAPISETGKL
                     QAILFQFPPYFNCTKENVTYLKYIASKMGDLPVAVEFRHNSWYNEQNTEKTLELLREL
                     GFIHTVVDEPQVGSGSVPIVLRETNSDMTLVRLHGRNQYGWMKASSPEWREVRTLYRY
                     NEEEINEWAKYVEHLQKLSKEVVVIFNNN"
BASE COUNT          516 a          217 c          326 g          457 t
ORIGIN      
        1 atttgttacc gcatgctatt aaaaaacaag acaatccaca aaaaaaggat ttattgatta
       61 gattcttctt tatattacta gataatgcta aacttgctca gagttatttt ggaagtggga
      121 tgttagcaga tttaatgatg cacttgaatt ctagtttaca gaaaaaactt gccaaacatc
      181 ctaagttatc gactattcta tcaccattag aaattgaaaa tttgaaaaga gagattgaat
      241 aagggacaaa tctggcttgt atttttataa atgaagtgat atattggttc caacaactta
      301 gcaaaggact gataattatg acagaaatta aatatttaga gggaatgtat caagatccat
      361 tctttccacc gtttctagta gataaaatta agcaatgtat tttagatacg gttcaatttt
      421 tagaacaagg gaatcatgat acagaagcga ttcaagctaa atttgatgaa atgacattag
      481 caattaatgc attgcaagat gagttttatg aaaatgagag tgaattagaa acaggcgcaa
      541 gggattcgat tgctgaaaca atcatcccga ttttagctca ttataagata gatatcgata
      601 ttgaagaatt acttagagag cgcgagtggt aatatatgat aaagacttca actgttagac
      661 agttgaagtt tttgttttgt ttcgaagtaa aagtgaggac caaattaaag gcttctccct
      721 cctttttgcg ttataataaa cataaatcaa aaacgataga gagggtggca gttgatggta
      781 acaatcgggt taactgggtg gagtgatcat gattctttat tacaaacaaa aaaattaaca
      841 ttggctgatt atgcggcaca ttttcctgtg gtggaggttg atacgagttt ttatgcgatt
      901 ccttctccgc gaacaacggc aaactgggcg gcacaaactc cggatgaatt tcattttgtg
      961 attaaagcat tttcggcgat gacgaaacat aaggaatggt cgcagtattt tgatagtgaa
     1021 aatgcgatgt acacggctta tatggatatg attgcgccga taagtgaaac gggaaaacta
     1081 caggcaattt tatttcaatt tccgccgtat tttaattgta cgaaagaaaa tgtgacttat
     1141 ttaaaatata ttgcatcaaa aatgggcgat ttgccagtag cggttgaatt tcgccataat
     1201 tcttggtata acgagcaaaa caccgagaaa acactggagt tgctgcgaga attaggtttt
     1261 attcatacag tcgttgatga accgcaagtt ggttctggga gcgtgccgat tgtgcttcgt
     1321 gagacgaata gtgatatgac attagtgcgg cttcacggcc ggaatcagta tggttggatg
     1381 aaagctagca gtccggaatg gcgcgaagtt cggacacttt accgttataa tgaggaagaa
     1441 attaacgaat gggcaaaata tgtggaacat ttacaaaagt tgtccaaaga agttgtcgtg
     1501 atttttaata ataaca
//
LOCUS       DABQVC010000306         1507 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.308,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000306 DABQVC010000000
VERSION     DABQVC010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.308"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(12..1355)
                     /locus_tag="IBJ56_002840"
     CDS             complement(12..1355)
                     /locus_tag="IBJ56_002840"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HAM3419074.1"
                     /translation="MTIYHFVGIKGSGMSALAQILHDKGFQVQGSDVDKYFFTQKALE
                     EKQIPIMTFSADNIQEGLTIIAGNAFPDTHEEIERALELGLPVIRYHKFLGQLIDGYT
                     SIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEYFALEACEYQRHFLA
                     YKPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDDAELRKLTLDIPI
                     IYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVIALCD
                     YEGLPVEDVKKELKTFEGVKRRFSITEKANQVLVDDYAHHPSEIRATVNAARQKYPDK
                     KVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHKTKG
                     NHIIKEEHTEELLKYPEAVILFMGAGDVQKFQAAYEKVLDHEVLTEADLKKSAIN"
BASE COUNT          439 a          315 c          244 g          509 t
ORIGIN      
        1 ttatttagtt attaattaat cgcgcttttt ttcaaatcag cttctgtcaa aacttcatga
       61 tcaagtactt tttcataagc ggcttggaat ttttgaacgt cccctgctcc catgaataaa
      121 ataacagctt ctgggtattt caaaagttct tctgtatgct cttctttgat aatgtggttt
      181 ccttttgttt tgtgcgctaa atcagcaatc gttaaattcc ctgttttttc acgcgcggaa
      241 ccaaagatat cacaaagata cacttcatcc gctaaattca agctgtccgc aaaaccttgt
      301 aagaatgtgc gagttcgcgt gaatgtatgc ggctgaaaaa cagcaactac ttttttgtca
      361 ggatattttt gtctagcagc atttactgta gcacggattt ctgatggatg gtgcgcgtaa
      421 tcatctacta atacttgatt agctttttct gtaatactaa atcttctttt gacaccttcg
      481 aaagttttta attccttttt cacgtcttcc actggtagac cttcataatc acaaagtgca
      541 ataacactta aggcatttaa tacattatgg tctccgtaag ctggaatttc aaacgaacct
      601 aagaactcgc cgcgatgata cacgtcgaat tttgttccag ttgtttcttt gattacattt
      661 ttagcttgga attcgttttc ctcgccaaaa ccaaagtaaa taatcggtat atctaaagta
      721 agcttacgta attcagcatc gtcccctaag gcaaatacag cttttttcac ttgtttaccc
      781 agtgtttcga atgcgttaaa tacatcatcc acgctcttga aatagtctgg atgatcccaa
      841 tcaatattcg tcataattgc atacgtaggt ttataagcaa ggaaatgacg ttgatattca
      901 cacgcttcaa gtgcaaaata ttccgctcct tttgtcccgc ttccagtacc atcaccgatt
      961 aaataagaag ttggacgaat cgcaccaaca acatgcgaaa gtaaaccagt tgtcgacgtt
     1021 ttaccatgag aaccagttat cgcaatactt gtatagccat caattaattg acctaaaaat
     1081 ttatgatatc gaatcaccgg aagcccaagc tccagtgcac gctcaatttc ttcatgtgta
     1141 tctgggaatg cattcccagc aataattgtt aggccttctt gaatattatc agccgaaaaa
     1201 gtcataatcg gaatttgctt ttcttctaat gctttttgtg taaagaaata tttatccaca
     1261 tcgctgcctt gcacttggaa acctttatca tgcaggattt gagcaagtgc actcatccct
     1321 gaccctttta ttccaacaaa atgatagata gtcattattt gaacccccat taatttatct
     1381 tgaagagggt gcctaaaaaa aacatgttaa ctgttaagca ccaagtctta actttgaaaa
     1441 cagtataaag tctccgtttt ctagacatca tcttacgttc taattgtgtt ttatgtttga
     1501 attctag
//
LOCUS       DABQVC010000307         1502 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.309,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000307 DABQVC010000000
VERSION     DABQVC010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.309"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>1502
                     /locus_tag="IBJ56_002841"
     CDS             <1..>1502
                     /locus_tag="IBJ56_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HAM3419075.1"
                     /translation="FFQSDFELVLNKLKTTNNQDDFVDYVTALHDDRNRNELENNRKD
                     IRQNDDLLTSMLDPLNSPKGKWPSKHSPVLMQQLAINAYLQQEGKIFSVNGPPGTGKT
                     TLLKELIAHNVVERAAILAEYKNADDAFNTISFKDGSKKYRGYDNEFNHFYGLKNDKI
                     NDFNLLVASSNNAAVENITKELPDYASLMDGIDSKETSEIKELFNQRKQETELSFRVR
                     ICDKYNKMKIESVKRKDIYFTLLAHLLKYNNDNLENKETLSEWGLISAPLGKRANLSN
                     YFYQVIMPIINYTTGSKKDNQAEFEKVKNKFKKQYQKVQDMQQVLHEISKFKNRKNLN
                     TKPLSRKEKSVFEDIKKYLENIDYLKKKVMVVDYELRQLLPTLKHDYFQFEREKSKLV
                     FLKKDTSILQEKILETTKEIANLEVGKKFHEKVFNRFLKTQRLVGIRQLEQALLDLRE
                     YEKSAIITERKQGGIIAYQKEALLEQEQYKVNLENKSQKYHSDIGLYEKR"
BASE COUNT          630 a          189 c          265 g          418 t
ORIGIN      
        1 cttttttcaa agtgattttg agcttgtgtt aaataaatta aagacaacaa acaatcaaga
       61 tgatttcgtt gattatgtaa cagcactaca tgatgataga aatcgaaatg aactagaaaa
      121 taatcgtaag gatattagac aaaatgatga tttattaaca agcatgttgg atcctttaaa
      181 cagtcctaaa gggaaatggc cgtccaagca ttcacctgtt ttaatgcaac aactagctat
      241 taatgcatat ttgcaacagg aaggaaagat tttttctgta aatgggccgc ctggaacagg
      301 aaagacaacc ttacttaaag aactgattgc gcacaatgtg gtagaaagag cagcgatatt
      361 agctgaatat aaaaacgcgg acgatgcttt taatacaatc tcatttaagg atgggagtaa
      421 gaagtataga ggatatgaca atgaatttaa ccatttctat ggactgaaaa atgataaaat
      481 aaatgacttt aatttattag ttgcatcatc caacaatgca gcggttgaaa atatcacaaa
      541 agaattacca gactatgcaa gtttgatgga tggtatcgat tctaaggaaa cctcagaaat
      601 aaaggaactg ttcaatcaac gaaaacaaga aacagaatta tcttttcgcg tgagaatatg
      661 tgataaatat aacaagatga aaatagaaag tgtgaaaaga aaagatatct attttacttt
      721 acttgctcat ttattaaaat ataataatga taatttagaa aataaggaaa ctctgagtga
      781 gtggggacta atttccgctc cattaggaaa acgagctaat ttatccaatt atttttatca
      841 agtaataatg ccaataatta attatacaac tggtagcaaa aaagataatc aggcagaatt
      901 tgaaaaagtt aaaaataaat tcaaaaaaca atatcaaaaa gtccaagata tgcaacaagt
      961 tttgcatgaa attagtaaat ttaagaacag gaagaattta aatacaaagc cattaagtcg
     1021 taaagaaaaa tctgtttttg aggatattaa aaagtaccta gagaatatag attatctcaa
     1081 aaaaaaggta atggttgtcg attatgaatt gagacagctt ttaccaacgt taaaacatga
     1141 ttattttcaa tttgaaagag aaaaaagtaa attagttttc ttaaagaagg acacaagtat
     1201 tttgcaagag aaaattcttg agaccacaaa agagatagca aatttagagg ttggcaaaaa
     1261 gtttcatgaa aaagtattta atcgattttt gaaaacgcaa cgcttagtag gaataagaca
     1321 attagaacag gctcttctag atttacgaga gtatgaaaaa tcagctatta taaccgaacg
     1381 aaaacaaggc gggattatcg cttatcaaaa agaggctttg ctagaacaag agcaatacaa
     1441 agttaactta gagaataaat ctcaaaaata tcatagtgat attggtttat atgaaaaacg
     1501 ga
//
LOCUS       DABQVC010000308         1483 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.310,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000308 DABQVC010000000
VERSION     DABQVC010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.310"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            208..1098
                     /locus_tag="IBJ56_002842"
     CDS             208..1098
                     /locus_tag="IBJ56_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase"
                     /protein_id="HAM3419076.1"
                     /translation="MIKGIHHVSALTKSFSENHHFYSDILGLRLVKNTVNQDNIHMRH
                     LFYGDYTGSPGTLLTFFEVPRIGSSYNERAFFGNITLGIPKGTSSYWKKRLNDFAISF
                     QKEGQTLTLQDPDTMGIILTEIPETISNPTIHTDIPAEKQIVRIIGADYHVPNPAATS
                     QFFTDLFGLESQNGVLVDKDKTSFAKLHATSSDKKSRTGRGTIDHIAYTVETKEAVDE
                     LHHIAVRNDLKIEEFVDREYFKSLYIREPGGLRIEFASAGPGFTIDEPLETMGDNLAL
                     PSFLEEKRTEIETYFGGDLS"
     gene            1095..>1483
                     /locus_tag="IBJ56_002843"
     CDS             1095..>1483
                     /locus_tag="IBJ56_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HAM3419077.1"
                     /translation="MIKDLKGIHHVTAMTSSAEKNYAFFTEVLGMRLVKKTVNQDDIH
                     TYHLFFADDKGSAGTDMTFFDFPNLPKGRHGTDSISRVAFRVPSDAALEYWLNRFEQL
                     EVPHSDIKTLFGKKYLTFQDFDDQQLQL"
BASE COUNT          490 a          294 c          286 g          413 t
ORIGIN      
        1 tcgatgctcg ttctgaccgc gtggatgcta gtcgcgttta tcttatccta ttttattttc
       61 accaaacgag atgtgtatta aagagcgctt aatggcgctc ttttttgcgg tcattaaaag
      121 ttacttactt tttgtgagca taaaactttt ctttttaata gtttagttat aaactatagt
      181 tagtaatcaa gaaggaggta caaacaaatg attaaaggca ttcatcacgt atctgcgcta
      241 acgaaatcat ttagcgagaa ccatcatttt tattcagaca tattagggct acggctcgta
      301 aaaaatacag taaatcaaga caatattcac atgcgccacc tattttacgg agactataca
      361 ggaagcccgg gtaccttgtt aacatttttc gaagtacctc gtatcggctc aagctacaac
      421 gaacgcgcct ttttcggaaa catcaccctt ggaataccaa aaggcacaag ctcttactgg
      481 aaaaaaaggc taaacgattt tgcgatatct ttccaaaaag aaggccagac tttaacctta
      541 caagatcccg atacaatggg tatcatccta acggaaatac cagaaaccat ttctaaccca
      601 accatccata ctgatatccc ggctgaaaag caaattgttc ggattatcgg cgcagactat
      661 cacgtgccaa atccggccgc gaccagccag tttttcacgg atttatttgg cttagaaagt
      721 cagaatgggg tattagtaga taaagacaag acgagttttg cgaaacttca tgccacaagt
      781 tcagacaaaa aatcgcgaac aggacgcggg acaatcgatc acattgctta taccgttgaa
      841 accaaagaag ccgttgatga acttcaccat atagctgttc gaaacgattt gaaaatagaa
      901 gaatttgttg accgcgagta ttttaaaagt ctatatattc gcgaaccagg tggcttaaga
      961 attgaatttg caagtgctgg ccccggtttt acaatagacg aaccgcttga aacaatgggc
     1021 gacaacttag ccttaccaag ctttttagaa gaaaaaagaa cagaaattga aacttatttt
     1081 ggaggagatt tatcatgatt aaagatttaa aaggaattca ccacgtaaca gcaatgacaa
     1141 gtagtgcgga gaaaaattat gcgtttttta cagaagtttt aggaatgcgt ttagtgaaaa
     1201 aaaccgtcaa ccaagacgat attcatacgt atcatttgtt tttcgccgat gacaaaggtt
     1261 cagcgggaac ggatatgaca ttttttgact ttccaaattt accaaaagga cgtcacggca
     1321 cagacagtat ttctcgcgta gctttccgag tacctagtga tgcggcgctt gaatactggc
     1381 ttaatcgttt tgaacaatta gaagttccgc atagtgatat caaaactcta tttggcaaaa
     1441 aatatctgac attccaagat tttgacgacc aacaattaca act
//
LOCUS       DABQVC010000309         1420 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.311,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000309 DABQVC010000000
VERSION     DABQVC010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1420
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.311"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(33..>1420)
                     /locus_tag="IBJ56_002844"
     rRNA            complement(33..>1420)
                     /locus_tag="IBJ56_002844"
                     /product="16S ribosomal RNA"
BASE COUNT          307 a          431 c          322 g          360 t
ORIGIN      
        1 atagagaaga acgaaaactc acaggtttcc ttttccttag aaaggaggtg atccagccgc
       61 accttccgat acggctacct tgttacgact tcaccccaat tatctgtccc accttcggcg
      121 gctggctcca taaaggttac cctaccgact tcgggtgtta caaactctcg tggtgtgacg
      181 ggcggtgtgt acaaggcccg ggaacgtatt caccgtggca tgctgatcca cgattactag
      241 cgattccggc ttcatgtagg cgagttgcag cctacaatcc gaactgagaa tagttttatg
      301 ggattagctc cacctcgcgg cttcgcgacc ctttgtacta tccattgtag cacgtgtgta
      361 gcccaggtca taaggggcat gatgatttga cgtcatcccc accttcctcc ggcttgcacc
      421 ggcagtcact ttagagtgcc caactaaatg ctggcaacta aaatcaaggg ttgcgctcgt
      481 tgcgggactt aacccaacat ctcacgacac gagctgacga caaccatgca ccacctgtca
      541 ctttgtcccc gaagggaaag ctctgtctcc agagtggtca aaggatgtca agacctggta
      601 aggttcttcg cgttgcttcg aattaaacca catgctccac cgcttgtgcg ggcccccgtc
      661 aattcctttg agtttcaacc ttgcggtcgt actccccagg cggagtgctt aatgcgttag
      721 ctgcagcact aaggggcgga aaccccctaa cacttagcac tcatcgttta cggcgtggac
      781 taccagggta tctaatcctg tttgctcccc acgctttcgc gcctcagcgt cagttacaga
      841 ccagagagtc gccttcgcca ctggtgttcc tccacatatc tacgcatttc accgctacac
      901 gtggaattcc actctcctct tctgcactcc agtcttccag tttccaatga ccctccccgg
      961 ttaagccggg ggctttcaca tcagacttaa aagaccgcct gcgcgcgctt tacgcccaat
     1021 aaatccggac aacgcttgcc acctacgtat taccgcggct gctggcacgt agttagccgt
     1081 ggctttctgg ttagataccg tcaagggaca agcagttact cttatccttg ttcttctcta
     1141 acaacagtac tttacgatcc gaaaaccttc ttcatacacg cggcgttgct ccgtcagact
     1201 ttcgtccatt gcggaagatt ccctactgct gcctcccgta ggagtctggg ccgtgtctca
     1261 gtcccagtgt ggccgatcac cctctcaggt cggctatgca tcgttgcctt ggtaggccat
     1321 taccctacca actagctaat gcaccgcggg cccatctgta agcgatagcc gaaaccatct
     1381 ttcaaaagcg tggcatgcgc cacactttat cattcggtat
//
LOCUS       DABQVC010000310         1393 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.312,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000310 DABQVC010000000
VERSION     DABQVC010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.312"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..446
                     /locus_tag="IBJ56_002845"
     CDS             <1..446
                     /locus_tag="IBJ56_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HAM3419078.1"
                     /translation="AMDEKQREHFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLV
                     GAAVVGVGLAQLNHESDLIKDYYNETIGQGFDYAYQIPGMNKVLQAVGRVIRGESDRG
                     VVLLIEERFSADRYRALFPTHWNHAKTVKSTDDISREVAGFWRNS"
     gene            491..1303
                     /gene="yidA"
                     /locus_tag="IBJ56_002846"
     CDS             491..1303
                     /gene="yidA"
                     /locus_tag="IBJ56_002846"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HAM3419079.1"
                     /translation="MYKIIAIDIDGTLLNDAHEITLAVRDSIKAAKAKGVKVVLCTGR
                     PLAGIKKSLIELDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAE
                     NVNVTYFDGKNMYVPSRKITEITCQDSLLLGTPLYHLPVEEAPESIHVSKVMLLDSPE
                     KITDVIKKLPESIKEKFYVVRSVPYNLEFLQKGVNKGSALASLAEKLGVSQSEVMSIG
                     DQENDITMIEYAGMGVAMGNATEHIKEIANYTTTTNNEDGVAQAIQMLILDR"
BASE COUNT          473 a          218 c          318 g          384 t
ORIGIN      
        1 ctgctatgga tgaaaagcag cgagagcatt ttttagaaga ttttcatgca gagaatgtag
       61 aaaccttgat tggcttttgc gttttaggag gcgttttttc agaaggggta gatcttcgcg
      121 ggaaccgatt agtcggtgcg gctgtcgttg gtgtaggact tgcgcaattg aatcacgaat
      181 ctgatttaat taaagattat tataatgaaa cgattggtca gggatttgat tatgcatatc
      241 agataccagg aatgaataag gtgcttcaag cagttggccg ggttattcga ggagaatcag
      301 atcgtggcgt agtgttgtta atagaagaac gattttctgc cgatcgttac cgagcgttgt
      361 tccctacgca ctggaatcat gcgaaaacag tgaagagcac agacgatatc tcccgagaag
      421 tggccggatt ttggcggaat agctaatttt ctagtagaat agaagtaatt agtcattttg
      481 ggaggaaatt atgtataaaa ttatcgcgat agatattgat ggcactttat taaacgacgc
      541 acacgaaatc acactagccg tgcgtgactc tattaaagct gcgaaagcaa aaggggtaaa
      601 agtagtatta tgtacaggcc gtccacttgc aggaattaaa aaaagcttaa ttgaactaga
      661 tcttttagat gaaggggatt acgcaattac gtttaatggg gcggtcgtgt tagaaacagc
      721 ttcagaaaaa acattagcag atataacctt aaataaaact gaactagaag aaatttatgc
      781 attttgtcat gcggaaaatg ttaacgtcac ttattttgat gggaaaaaca tgtatgtacc
      841 aagccgaaaa atcacagaaa tcacttgtca agattccctg ctacttggta cgccactata
      901 tcatttacct gtagaagaag cgcctgaatc tattcatgtt tccaaggtta tgctattaga
      961 ctcacctgaa aaaattaccg atgttataaa aaaattacca gagagtatca aagaaaaatt
     1021 ttacgttgtc cggagtgttc cttataacct agagttcttg caaaaaggcg taaataaagg
     1081 atcagcgctc gctagtttag cagaaaaact tggggtgtct caaagtgaag tcatgagtat
     1141 tggtgaccaa gaaaatgata ttaccatgat tgagtatgct ggtatgggag ttgcaatggg
     1201 taatgcgaca gagcatatta aagaaatcgc taactataca acaactacta ataatgaaga
     1261 tggtgtggca caggctatac aaatgctcat tctggaccgc taaaaatagt gaatagtagt
     1321 aaaaacagaa tattgtcaaa cagtgtaaat ggagatttaa aaagcatgcg agtcactata
     1381 aaaagccgaa act
//
LOCUS       DABQVC010000311         1383 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.313,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000311 DABQVC010000000
VERSION     DABQVC010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.313"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..1252
                     /locus_tag="IBJ56_002847"
     CDS             <1..1252
                     /locus_tag="IBJ56_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007543283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAM3419080.1"
                     /translation="DSKVWKYDNVGAVKTLVDDVIKDMKSEFAYMDNESDAEKAFMKH
                     LKATRSNKGKTNMLKEAQHLMPVLPEEFDRYKYFLNTQNGYINLQNGELINHDRQKMF
                     TKISNIEYTDKIDAPLWQEFLNDIFAGDKELINYIQKSVGYSLSGSTSEQVMFILFGN
                     GRNGKSVFLDIINDIFGSYATNIQPQTIMVKQQSSNANSDIARLHGARFVTTTEPNEG
                     VRLDEGLVKQLTGGDKVTARHLYKDEFEFTPEFKIWMATNHKPIIRGRDDGIWRRLHL
                     VPFTVKIPDTKVDKQLKYKLRRELTGILNWAVEGFLKWQREGLGMPKAVENASSEYKS
                     EMDVITAFIEDCCDVREGEKVNAKKMYETYRDWAKENGQYLMSSTKFGKEIGMKFTKK
                     KTKTANVYEGITLNNDYYNLNLNF"
BASE COUNT          512 a          190 c          275 g          406 t
ORIGIN      
        1 tgattccaaa gtttggaaat atgataatgt tggagccgta aaaacgcttg tcgatgatgt
       61 aattaaagat atgaaaagcg aatttgccta catggataat gaatcagatg cagaaaaagc
      121 atttatgaag cacttgaaag caactagaag caataaaggg aaaacaaata tgttgaaaga
      181 agcacaacat ttaatgccag ttttgcccga ggaatttgac agatacaaat attttttaaa
      241 cacacaaaat ggatatatca atttacaaaa cggtgagctt atcaatcatg atagacaaaa
      301 aatgtttact aaaattagca atattgaata tacagacaag attgacgctc ctttatggca
      361 agagttctta aatgatattt ttgcaggcga taaagagtta atcaattata ttcaaaaatc
      421 cgttggatac tcactttcag gctctacatc tgaacaagtt atgtttatcc tttttggaaa
      481 tggtcgaaat ggtaagtctg ttttcttaga tatcatcaat gatatttttg gttcttatgc
      541 aacgaatatt caaccgcaaa caattatggt gaagcaacaa tccagtaatg caaatagcga
      601 tattgctcgt ttgcatggtg ctagatttgt tacaacgact gaaccaaacg aaggtgtgcg
      661 tttagatgaa ggcttagtaa aacagcttac tgggggagac aaggttacag cacgacatct
      721 ttataaagat gaatttgaat tcacaccaga gttcaaaatt tggatggcaa ctaatcacaa
      781 accgattatt cgaggtagag acgatgggat atggcgtaga ttacatttag ttccatttac
      841 tgtgaaaata cctgatacaa aggtcgacaa gcagttaaaa tataaacttc gtcgagaatt
      901 aacaggtatt ttaaattggg cagtagaagg gttccttaaa tggcaaaggg aaggcttagg
      961 aatgccaaaa gcagttgaaa atgcaagttc tgaatacaaa tcggaaatgg atgttataac
     1021 tgcatttatt gaagattgtt gtgatgttag agaaggtgaa aaagtgaatg ctaaaaaaat
     1081 gtatgaaaca tatcgtgatt gggcaaaaga aaatggtcaa tatttgatga gtagtacaaa
     1141 atttggtaaa gaaatcggaa tgaagtttac taagaaaaaa acgaaaactg caaatgtgta
     1201 tgaaggaata acactaaata atgattacta taatttgaac ctaaatttct aaaaaggtgg
     1261 agggtttgct tcaactatcc accctgtttt aaccttagag ccgcaatcgt tttgaagata
     1321 taatatcttg caaggtggat agtttgggtg ttttttcata aaccttctac ttttttactc
     1381 cta
//
LOCUS       DABQVC010000312         1374 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.314,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000312 DABQVC010000000
VERSION     DABQVC010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1374
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.314"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(9..1235)
                     /locus_tag="IBJ56_002848"
     CDS             complement(9..1235)
                     /locus_tag="IBJ56_002848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HAM3419081.1"
                     /translation="MHEEFCVCLGRREEVLIAIKQRGLKTIVFVDKQMPTPNLNLCDY
                     FFHLDNLADTEKIVMILAGFDKSKIKAIISPGEKGVRTAAELRAKLSIVGIGPDEIEK
                     FRDKAIMKDILLEKKFRVPNYIDVKKSETGYQFLEKFVEVIAKPKQGMGSVGVKRIKT
                     EKDWLEYYEKFNREKEQYHFSKGILLEESIQGEEYHIDAIIQDGEIKFAHASMYSMPL
                     IDFRKYNFVGTIALDANTVLFKELIEYNSEILKALEVKNGVTHLECFKNDREICFCEI
                     AIRPAGSAVPENLKIQTNIDIIDSFVAVEIGEKFIPDIKMLNGVTGSLQIPIYSNGIV
                     TSLLSEKEIDMKDIIKINYLVDIGQRIETPIAAHERMGDIFVHADNLDDMIRKFKNIH
                     LNFDTYVKVEENYEDK"
BASE COUNT          433 a          271 c          153 g          517 t
ORIGIN      
        1 aacgagtgct atttatcttc ataattttcc tccactttta cgtaagtatc aaaattaagg
       61 tgaatgtttt tgaattttct tatcatgtca tctaaattat cagcgtgaac aaaaatatct
      121 cccattctct catgtgctgc aataggtgtt tctatccttt ggccaatatc tactaagtaa
      181 ttaattttta ttatatcttt catatctatt tctttttcac ttaaaagtga agttactatt
      241 ccattgctat aaataggtat ctgtaaagaa cccgtgactc cattgagcat ttttatatct
      301 ggaataaatt tttctccaat ttctacagca acaaaactat caatgatatc aatattagtt
      361 tgaatcttca aattttctgg aactgcactt ccggcaggtc taatagcaat ctcacaaaaa
      421 catatttctc tatcgttttt aaaacattcc aaatgtgtaa caccattttt cacttctaaa
      481 gctttgagaa tttcactatt atactcaatt agttctttaa aaagaacagt atttgcatct
      541 aaagcaatag ttccaacaaa attatactta cggaaatcaa ttaaaggcat tgaatacata
      601 ctggcatgcg caaatttaat ttccccatcc tgaataattg catcaatatg atactcttct
      661 ccttgtatag attcttctaa taaaatccct tttgaaaagt gatactgctc tttttctcgg
      721 ttgaattttt cgtaatattc taaccaatct ttttctgtct ttattctctt aactccgaca
      781 gagcccatac cttgtttagg tttggctatg acttctacaa atttttctag aaattggtag
      841 cctgtttcac tttttttaac atcaatatag ttaggtaccc taaacttttt ttctagtaaa
      901 atatctttca ttattgcttt atcacgaaac ttttcaattt catccggacc aattccaaca
      961 attgacaatt tagctctcag ttcagcagca gtacgaactc ctttttctcc tggagatata
     1021 attgctttaa tcttactttt atcaaaacca gctaaaatca taactatttt ttctgtatca
     1081 gctaaattat ccaaatgaaa aaaatagtca cataaattta aatttggagt aggcatttgt
     1141 ttgtctacga atacaattgt ttttaagcct ctttgtttaa tagctataag aacttcttct
     1201 ctccgcccaa gacaaacaca aaattcctca tgcatgcgta tcatccttca tcataatttt
     1261 agcatttctt tgtaacaaca aaacggacct ttctactgat tcgaaattat cagaattaaa
     1321 ataagcaaac aacgccaatc ttcctcggtt atcatcaagt ttttccacca gact
//
LOCUS       DABQVC010000313         1366 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.315,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000313 DABQVC010000000
VERSION     DABQVC010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1366
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.315"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            57..551
                     /locus_tag="IBJ56_002849"
     CDS             57..551
                     /locus_tag="IBJ56_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HAM3419082.1"
                     /translation="MKKIISLLVAFVCLWSILLPGHEADAAAKINSWDLVDSSKHLDY
                     SGNSKYMSFIRSGANTWNAYKKGVIRPASGANKSDVYCSDISANNNINATTYSNGKIT
                     FNKKNMDKKNNAGKQNVATHELGHGLRLGHNASSDVMYQYSTSKTTLSTNDKQSYDAA
                     YKKY"
     gene            567..1187
                     /locus_tag="IBJ56_002850"
     CDS             567..1187
                     /locus_tag="IBJ56_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HAM3419083.1"
                     /translation="MKKTTMGIIASAISILTIGCFLTINTYAEKAEPKKKEVPTYAIF
                     SDYTLDVDNPDEVVEDADYVFVGKVTEETGTIYKNKTPIEQEDGSIEYIGEAYTNYKV
                     EVISNLKNELTLNKEIALEKQGGIREDGSAYDVFEDDQLPEEGEIYIFTAYTQDDGSL
                     LVAGGNSTISFDEKTKNIDTEKEVSKTEEFELYEEAVENQVTSNEN"
BASE COUNT          529 a          189 c          267 g          381 t
ORIGIN      
        1 aatatgtttg aggctacact ttattaatta ttacatacaa agagggagag cggagaatga
       61 aaaaaattat atcattatta gtagcatttg tatgtttgtg gagtatttta cttccaggac
      121 atgaagcaga tgcagcggca aaaatcaata gctgggactt agtagattct agtaaacacc
      181 tagattactc ggggaattca aagtatatgt catttattcg atctggcgct aatacttgga
      241 atgcttataa aaaaggagtt attagaccag cttcaggagc gaataaatca gacgtatatt
      301 gtagtgatat ttcagccaat aataatatca atgcaacgac ttatagtaac gggaaaatta
      361 cttttaacaa gaaaaatatg gataaaaaaa ataatgctgg gaaacaaaat gttgctacac
      421 atgagttggg acatggcttg cgactcgggc ataatgcttc tagtgacgta atgtatcagt
      481 atagcacgtc caaaactact ttatctacaa atgataaaca atcctatgat gcagcatata
      541 aaaaatatta aaaaggggta ctaacattga aaaaaacaac tatgggaata atcgcttcag
      601 caattagtat tttaactatc gggtgttttt taacaataaa cacatatgcc gaaaaagctg
      661 aaccaaagaa gaaagaagta ccaacatatg ccattttttc tgattataca ctggatgtag
      721 ataatccaga tgaagtggtc gaggatgcag attatgtgtt tgtagggaaa gtaacagaag
      781 aaactggaac aatctataaa aataaaacgc caatcgaaca agaagatggt tcaatcgagt
      841 atattggtga agcttataca aattacaaag tagaagtcat ttcgaatttg aagaatgaac
      901 taacgctgaa taaggaaatt gcacttgaaa aacagggtgg tattcgtgaa gatggttctg
      961 cttatgatgt ttttgaagat gaccagttac cagaagaagg cgaaatctat attttcactg
     1021 cttatacgca agacgatgga tcactccttg tagcaggtgg gaattctacc atttctttcg
     1081 atgaaaaaac gaaaaacatt gatacagaaa aagaagtgag caaaacggaa gagtttgaat
     1141 tatatgaaga ggccgttgaa aatcaagtta cttccaacga aaattaaata agccattata
     1201 aagcatagcg attctggcat gaatcgttat gcttttttat atagtcgaag gatttcgaga
     1261 aaaagcctaa taaaaataat ttttaaacaa tttgcaatta tttgttgcgc tttcaaaaaa
     1321 aatcggttaa actaataacg ttgcataata aaacaaagga ggaatg
//
LOCUS       DABQVC010000314         1353 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.316,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000314 DABQVC010000000
VERSION     DABQVC010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.316"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..228
                     /locus_tag="IBJ56_002851"
     CDS             <1..228
                     /locus_tag="IBJ56_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HAM3419084.1"
                     /translation="PVFVQAIKKTELIPSKWLPTVSIFVGAILGALATFLDGSGSLAT
                     MIWAGALAGAGGTGLFEQFTNRAKKYGKDDK"
     gene            228..1097
                     /locus_tag="IBJ56_002852"
     CDS             228..1097
                     /locus_tag="IBJ56_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase family
                     protein"
                     /protein_id="HAM3419085.1"
                     /translation="MALTEAWLIEKANRKLNAGGMYKITSDKTRNVIKKMAKEGIYLC
                     VAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDVIWES
                     TTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSGEKIPTATQNTNTNSNRYE
                     GKVIDSAPLLPKMDFKSSPFRMYKVGTEFLVYDHNQYWYKTYIDDKLYYMYKSFCDVV
                     AKKDAKGRIKVRIKSAKDLRIPIWNNTKLNSGKIKWYAPNVKLAWYNYRRGYLELWYP
                     SDGWYYTANYFLK"
BASE COUNT          473 a          214 c          299 g          367 t
ORIGIN      
        1 cctgtttttg tgcaagcaat taaaaaaaca gagctaattc cttcgaaatg gcttccaaca
       61 gtaagtattt ttgttggggc cattttaggg gccttagcga catttttaga tggttctgga
      121 tcgcttgcaa caatgatttg ggcaggtgca ttagcaggag ctggcggaac cggtttgttc
      181 gaacaattta ctaatcgagc taaaaaatat ggaaaggatg ataaataatg gcattaacag
      241 aggcatggct aattgaaaaa gcaaatcgca aattgaatgc tgggggaatg tataaaatta
      301 catcggataa aacacgaaat gtaattaaaa aaatggcaaa agaaggtatt tatctttgtg
      361 ttgcgcaagg ttaccgctca acagcggaac aaaatgcgct atatgcacaa gggagaacca
      421 aacctggagc aattgttact aatgccaaag gcgggcaatc taatcacaac tacggggtag
      481 ctgttgactt gtgcttgtat acaaatgacg gaaaagatgt tatttgggag tcaacaactt
      541 cccggtggaa aaaggttgtt gctgctatga aagcagaagg gtttaaatgg ggcggagact
      601 ggaaaagttt taaagactat ccgcattttg aactatgtga tgctgtaagt ggtgagaaaa
      661 tccctactgc aacacaaaac actaatacaa attcaaatcg ttacgagggt aaagtcattg
      721 atagcgcacc actgctaccg aaaatggact ttaaatcatc accattccgc atgtataagg
      781 taggaactga gttcttagta tatgatcata atcaatattg gtacaagaca tacattgatg
      841 ataaacttta ctacatgtat aaaagctttt gcgatgttgt agctaaaaaa gacgcaaaag
      901 gtcgcatcaa agttcgaatt aaaagcgcga aagaccttcg gattccaatt tggaataaca
      961 caaaacttaa cagcgggaaa attaaatggt atgcacccaa tgtaaaacta gcgtggtaca
     1021 actatcgaag aggatattta gagctttggt atccgtcaga cggctggtac tacacagcta
     1081 actacttctt gaaataaaac tattgccctc gcttttgcgg gggtttttgg tcgagtagac
     1141 acatcaacaa acatctgttc caattgatat tgattgtaat aagaggttat aatgacataa
     1201 aaacgtttta ttgggagcgg gtgtttatta cgattgacgt agaaaatata ttagagaaag
     1261 ttggaattgg tagtacaaat ccctttaaag ttaaagcctc cgatggtaaa atttatgtaa
     1321 taaaaattaa gaatgatgct tgtgacggaa aaa
//
LOCUS       DABQVC010000315         1352 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.317,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000315 DABQVC010000000
VERSION     DABQVC010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1352
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.317"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..496
                     /locus_tag="IBJ56_002853"
     CDS             <1..496
                     /locus_tag="IBJ56_002853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA topology modulation protein"
                     /protein_id="HAM3419086.1"
                     /translation="KTTLAKKLSEWQQIDYFETDRIVWKREETEVRRTDNEKIAVLNK
                     ILQQENWIIEGVHLEAWVDESINQADVVIFLDLPKKQIRSQIIKRQIKQLLRLEAAHY
                     PIRFNMLKKMFYWDDLFDQRTKPLIARKMAQNPTKWLIIKEKTVFQEIKNGVLQIISS
                     RDIL"
     gene            527..838
                     /locus_tag="IBJ56_002854"
     CDS             527..838
                     /locus_tag="IBJ56_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HAM3419087.1"
                     /translation="MNEKLRKAYLPMTETAFYILLSLVKPRHGYAIIENVAKMTDDRI
                     KLGPGTIYGSLSKMNKDNLIQIIQEESNRKIYQITEIGTDILQLEKARIEELYRNSRE
                     V"
     gene            841..>1352
                     /locus_tag="IBJ56_002855"
     CDS             841..>1352
                     /locus_tag="IBJ56_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HAM3419088.1"
                     /translation="MEKKVVKFFTVDNMEKEEAYLNEMAQNGWFFQKYKSFRYHFKQG
                     EPAKYSYAIDFKENEGDEDAYKTLFEDAGWETVFSYPVLNGNWMYFRKAVAPGETEEA
                     IFTDETSLIQLYKNIRKRWTIFGAIVSLFLLIELLIVFQMENNIGITTFIFIIFLILV
                     ALYGKMFFNLT"
BASE COUNT          500 a          221 c          253 g          378 t
ORIGIN      
        1 caaaaccact ctagcaaaaa agctttccga gtggcaacaa atcgattatt ttgaaacaga
       61 tcgcattgtc tggaaacgag aagaaacaga ggtaagacga accgacaatg aaaaaatagc
      121 tgtattaaat aagattcttc aacaagaaaa ctggattatt gaaggcgttc atttggaagc
      181 atgggtggac gagagcatta accaagcgga cgtggttatt tttcttgatt tacctaaaaa
      241 acaaatccgc tcccaaatta ttaagcgcca aattaaacaa ttactacgat tagaagcagc
      301 tcattaccca attcggttca acatgttaaa gaaaatgttt tattgggacg atttatttga
      361 ccaacgaaca aaaccactaa ttgctagaaa aatggcccaa aatccaacaa aatggctaat
      421 tatcaaagaa aaaacggtat ttcaagaaat aaaaaatggg gtattgcaaa ttatatcgag
      481 ccgtgatata ttataagtat caaatacatc gaggtgcgat atagttatga atgaaaaatt
      541 acggaaagcc tatcttccaa tgaccgaaac cgctttttac atattactat cgctcgtcaa
      601 accaaggcac ggttacgcga ttatcgaaaa cgtcgcaaag atgacagatg atcgaatcaa
      661 gcttggtccc ggtactattt acggaagctt atccaaaatg aacaaagata atttgatcca
      721 aattattcaa gaagagagta atcggaaaat ctatcaaatt actgaaattg gcacagatat
      781 tttgcaatta gaaaaagcgc gcatcgaaga attgtataga aactcaaggg aggtctaata
      841 atggagaaaa aagtcgttaa gttttttacc gtggacaata tggagaaaga agaagcctat
      901 ttaaatgaaa tggcacaaaa tggttggttc tttcaaaaat ataaatcttt tagatatcat
      961 ttcaaacagg gagagcctgc gaaatacagc tatgcgattg atttcaaaga aaatgaagga
     1021 gacgaagatg cctacaaaac acttttcgaa gatgctggct gggagactgt ttttagctat
     1081 ccagtattaa atggcaattg gatgtatttc cgcaaagccg tagctcctgg agaaacagag
     1141 gaagctattt tcactgacga gacttcccta attcaacttt acaaaaatat ccgcaaacgt
     1201 tggacgattt ttggtgcgat agtgagtttg tttttactta ttgaattgtt aatcgtgttt
     1261 caaatggaaa acaatattgg aattactaca ttcatcttta ttatttttct tattcttgtt
     1321 gcactatatg gtaaaatgtt tttcaactta ac
//
LOCUS       DABQVC010000316         1330 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.318,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000316 DABQVC010000000
VERSION     DABQVC010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.318"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..639
                     /locus_tag="IBJ56_002856"
     CDS             <1..639
                     /locus_tag="IBJ56_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3419089.1"
                     /translation="QNVDFEAKPGDMIVLTGENGSGKTTLLDMLASLKKPDSGTLELD
                     NEVFTTNDIRQQIAYLNNELYAKKSTTIEDYMKQHGLLFENMELDKWDRLLAGWRINK
                     RLKLGELSTGMLMKVKIGSVLARKAKLYLYDEPFASIDIMARSEVMKAIISETNPDAI
                     TIISSHHLEGTEKLYSKLWLIKDNTLKTIETETYREETGNALIDFYKEEMNK"
     gene            636..>1330
                     /locus_tag="IBJ56_002857"
     CDS             636..>1330
                     /locus_tag="IBJ56_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3419090.1"
                     /translation="MTKMITFYLKQISPILLIGLAIILGLNFLGFTMNLLEGTDLLFR
                     AIRGTTVMSLILVLITTWKITKLDTSKENVTLASLSGFSETKKFFGKLFAAYLSAITV
                     ILLQSAFIWYYGFETGRMEAGDALSFVSGTLMMFLFIAMFVCYFVIPVGWLKDHVKAS
                     SLQKAAVILLLFAILIVNLLAEYYLHIYNGPGIISILPNGHFDISLLSIVWNVGLCSV
                     IAGSYIYMKSKKM"
BASE COUNT          434 a          212 c          259 g          425 t
ORIGIN      
        1 caaaatgtag acttcgaagc aaaaccaggc gacatgatcg tgctcactgg tgaaaatggt
       61 agcgggaaaa cgaccttgct agatatgtta gcaagcttga agaaaccgga tagtggcaca
      121 ttggaattag acaatgaagt atttactact aatgatatcc gccagcaaat cgcttattta
      181 aataatgaac tttacgctaa aaaaagtact actatagaag attatatgaa acaacatggt
      241 ttgctttttg aaaatatgga gttagataag tgggaccgat tacttgctgg atggcgaatt
      301 aacaaacgac taaaacttgg cgaactatca acaggtatgt taatgaaagt gaaaattggt
      361 agtgtgttag caagaaaagc caaattgtat ctttatgatg aaccttttgc gagtatcgat
      421 attatggctc gttcagaagt aatgaaagct attattagcg aaacaaatcc agatgctatc
      481 acgattattt cttcccacca tttagaagga accgaaaaat tatatagcaa actgtggtta
      541 attaaagata acacgttaaa aactattgaa acagaaactt atcgcgagga aacaggcaac
      601 gcattaatcg atttctataa ggaggaaatg aacaaatgac aaaaatgatt actttttatt
      661 taaaacaaat cagtcctatt cttttgattg gacttgcaat tatcttgggg ctgaactttc
      721 tagggttcac gatgaatctg cttgagggaa cggatttgct ttttagagca attcgaggaa
      781 cgacggtaat gagcctaatt ctagtgctta tcactacttg gaaaatcacg aaactcgaca
      841 catcgaaaga aaatgtaaca cttgcttctc tttctggatt ttcagaaaca aagaaatttt
      901 tcggaaaact atttgctgct tatttatcag caattactgt aattttactt caaagtgcct
      961 ttatttggta ttacggtttt gaaacaggac gtatggaagc aggcgatgcg ttatcgtttg
     1021 tttctggaac gttgatgatg tttttattta tcgctatgtt tgtttgttac tttgttattc
     1081 cggtagggtg gttaaaagat cacgtgaagg cgagttctct tcaaaaagcg gcagttattc
     1141 tccttctctt tgctatccta attgtcaatt tactagctga atactacttg catatttata
     1201 acggccctgg aatcatttcc attttaccta atggacactt tgatatttcc cttctatcta
     1261 ttgtttggaa tgtaggctta tgttcagtta ttgcaggcag ttacatctat atgaaatcta
     1321 aaaaaatgga
//
LOCUS       DABQVC010000317         1321 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.319,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000317 DABQVC010000000
VERSION     DABQVC010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1321
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.319"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..215
                     /locus_tag="IBJ56_002858"
     CDS             <1..215
                     /locus_tag="IBJ56_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cysteine desulfurase NifS"
                     /protein_id="HAM3419091.1"
                     /translation="EKEDIYISTTSACSSKQKLASSTLKAMGVTDEEATGAVRVSLSY
                     ENRLSEAKIFIQKLQEIIENLNKVVK"
     gene            217..>1321
                     /gene="thiI"
                     /locus_tag="IBJ56_002859"
     CDS             217..>1321
                     /gene="thiI"
                     /locus_tag="IBJ56_002859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HAM3419092.1"
                     /translation="MEFDRMLIRYGELSTKGKNRKQFVTKLAQNVKRAMTDLPEVRIH
                     GERDRMYIILNGADYQLVEERLKPIFGIQSFSPAVRVNLDVEEVKAAALALVQDAHEE
                     NGTFKVAARRSHREFPLDSNEINQEIGAYVLQNMEDLTVNVKNPDVKLTIDVRKEGVF
                     LSCRTILGAAGLPVGSSGRAMLMLSGGIDSPVAGYLAQKRGVEIEAVHFHSPPYTSEQ
                     AKQKAVDLAAKLAKYSGQVQMHIVPFTEIQEVIKQQIPESVIMTVTRRMMLRITDELR
                     RRRNGLAIVNGESLGQVASQTLESMLAINAVTATPIIRPVVSMDKNEIIQIAQKIDTY
                     NLSVQPFEDCCTIFTPPSPKTKPKLDKIEHYESF"
BASE COUNT          458 a          237 c          287 g          339 t
ORIGIN      
        1 tagaaaaaga agatatttac atttccacca ctagtgcgtg ttcttctaag cagaagctag
       61 caagcagcac gttaaaagcg atgggtgtga cggacgaaga agcaacagga gcagtacgtg
      121 ttagcttatc gtatgaaaat cgtttatctg aagcgaaaat ttttattcaa aaactgcaag
      181 aaatcattga aaatctaaat aaagtggtga aataaattgg aatttgatcg tatgttaatt
      241 agatacggag agttatctac aaaaggaaaa aacagaaaac aatttgtgac aaagttggcg
      301 caaaacgtca aacgtgcaat gacagatttg ccggaagttc gtattcacgg agaacgtgac
      361 cgaatgtata ttattttaaa tggggcagat tatcagctcg tagaagaacg tttaaaaccg
      421 attttcggaa tccaatcctt tagtccagct gtacgcgtca atttagatgt agaggaagta
      481 aaagccgctg cacttgcctt agtacaagat gcgcatgagg agaacggaac atttaaagtc
      541 gcagcaagac gtagccaccg cgagtttccg cttgattcta atgaaatcaa ccaagaaatc
      601 ggtgcttatg tattacaaaa tatggaagat ttaacggtca atgttaaaaa tcctgatgta
      661 aaactaacca ttgatgtgcg taaagaaggc gtatttttat catgccggac aattcttggt
      721 gcagctggtc tgccagtagg ttcatcgggt cgtgcaatgt taatgctttc gggaggtatt
      781 gatagtccgg ttgcaggcta tttagcccaa aaacgtggcg tagaaattga agcagttcat
      841 tttcatagcc caccgtatac aagtgaacaa gcgaaacaaa aggcggttga tttagctgca
      901 aaattggcta aatacagcgg acaggtacaa atgcacatcg ttccatttac agagattcaa
      961 gaagtgatca aacaacaaat tcctgaaagt gtgattatga ccgtaactcg tcgaatgatg
     1021 cttcgaatta cggatgaact tcgtcgcagg agaaacggtt tagcgattgt taatggcgaa
     1081 agtttagggc aagttgccag ccaaacattg gaaagtatgc tagcaattaa cgccgtaaca
     1141 gcgacaccaa tcattcgtcc agtcgtatcc atggataaaa atgaaatcat tcaaatcgcg
     1201 caaaagattg atacgtataa tttatcagtg caaccatttg aagattgctg taccattttc
     1261 acgccaccat ctccaaaaac aaaaccaaaa ctagataaaa tcgagcatta cgaaagtttc
     1321 a
//
LOCUS       DABQVC010000318         1316 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.320,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000318 DABQVC010000000
VERSION     DABQVC010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.320"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(27..797)
                     /locus_tag="IBJ56_002860"
     CDS             complement(27..797)
                     /locus_tag="IBJ56_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HAM3419093.1"
                     /translation="MSKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGR
                     GPFMLDEIRKELDINSYICYNGQYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVF
                     SGKDSMRANLPDHDRVTIGMDSIKRDYPKVDANYYKGRDIYQCLLFCDESYDAYYREE
                     FKQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMEDTYAFGDGLNDIAMLQAVG
                     TGVAMGNGRDEVKAVADYVTDHVDEDGVYKALEHLKLI"
BASE COUNT          425 a          264 c          193 g          434 t
ORIGIN      
        1 ttttgagcac aggctttttt gatattttaa attaatttta aatgttctaa agctttataa
       61 accccatctt catccacatg atccgtaaca tagtcagcga ccgcttttac ctcatcacgg
      121 ccgttgccca ttgccacgcc agttccaaca gcttgaagca ttgcaatatc gttcaaacca
      181 tcgccaaatg cgtaagtatc ttccatcgag aagccaagtt ttttgatcat ttgtttaatg
      241 ccttccgcct tcgaaccgtc agctggacaa acatccacgg aaacatcatg ccagcgcaag
      301 aaaccatact gcttaaattc ttctcggtaa taagcatcat acgactcatc gcagaaaagt
      361 aaacactgat aaatgtcacg acctttataa taattagcat ccactttagg ataatctctt
      421 ttaatagaat ccattccgat tgtcacccgg tcgtgatccg gtaaattcgc gcgcatggaa
      481 tcttttcctg aaaaaacaat tggatgctca tgctccgatg caaccgtgat taatcgttct
      541 aaagattctg ttggtaatgg tttagcgtat atttcttttc cttcaaaaat aacatattga
      601 ccgttgtagc aaatataaga attaatatct aattcttttc tgatttcatc aagcataaat
      661 ggaccacgac cagttgcaat agccacataa acgccatttt ctttcaattt agcaatcgct
      721 tgcttcgctg atgctggaat ttctttcgtt tctcctacaa gtgtcccatc tacatcaaaa
      781 aatacaattt tactcattga ttaaacgcct ctatcctcta tccattttta aatcattatg
      841 tttaaattat agcagaaaat ctcattgata acagggttga caaaattaat tatactttct
      901 agtagcaatt atctggattt atggtatatt agaatgaagg atatagatcg gatgaacatt
      961 tgtagaacga caatggaacg tgaaaaaaaa cttataatta catcttttac tcggaaattt
     1021 gtttcaaatt cccaaaataa aggtatgcaa ttataacgga taagaaattt aacatacgtg
     1081 cacagctatt tttatacatt agtctgtggt aatttttctt tgtctttttt atgcctgatt
     1141 gtcagtatct cgtgcaccca tatccgcttg ctactaagtc cacaactgaa agcaagccaa
     1201 ttattactga ataattatta ggttttcgac cagagaatct atttttaaaa actaaactta
     1261 aaatttaagg agagaaaaac atgattttta aagtatttta tcaagaaaca ctgaca
//
LOCUS       DABQVC010000319         1304 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.321,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000319 DABQVC010000000
VERSION     DABQVC010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.321"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..350)
                     /locus_tag="IBJ56_002861"
     CDS             complement(<1..350)
                     /locus_tag="IBJ56_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol phosphate lipoteichoic acid synthase"
                     /protein_id="HAM3419094.1"
                     /translation="MKDWKIKIQTFLSKNYGFFVLAVILYWLKTYIAYQLEFKLGIEN
                     LMQQILLFINPLSGAIFFMGLALFAKGRRSFIWIIVIDFLMSFILYANIVYYRFFSDF
                     ITLPNLNAKQMQNMG"
     gene            609..1232
                     /locus_tag="IBJ56_002862"
     CDS             609..1232
                     /locus_tag="IBJ56_002862"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HAM3419095.1"
                     /translation="MEAIITKEFFEDKTTIELARDILGMRLVHQTDEEILSGLIVETE
                     AYLGATDMAAHSFQNLRTKRTEVMFSSPGRIYMYQMHRQVLLNFITMPKGIPEAILIR
                     AIEPDEQAKQQMVQNRHGKTGYELTNGPGKLTQALGLSMQDYGKTLFDSNIWLEEAKL
                     PHLIEATNRIGVPNKGIATHFPLRFTVKGSPYISAQRKSRILTDIWK"
BASE COUNT          487 a          227 c          234 g          356 t
ORIGIN      
        1 cccatgtttt gcatttgttt tgcgtttaga ttcggaagtg taatgaaatc actaaagaat
       61 cgataatata caatatttgc gtaaagaata aaactcatta aaaagtcaat gacgataatc
      121 caaatgaatg aacgacgtcc cttagcaaag agcgcaagac ccataaagaa aatggcccca
      181 cttaatggat taatgaacag caaaatttgc tgcatcagat tttctatgcc aagtttaaat
      241 tcaagttgat atgcaatata cgtttttagc caataaagaa tgacggctag aacaaaaaat
      301 ccataattct tgcttaaaaa cgtttggatt tttattttcc aatccttcat gaaacacctc
      361 tcctacacac tatttactcg ttttaattgt tattttgaaa tgaaaaaaag aagctgtatt
      421 atgtaacaag aaacattttc atacagcacc cactttaaca taattctaac acaagattaa
      481 taaaaggcaa gttataacct atacgtctga agtaggattt taggggaaat aggctgatat
      541 aactagtcaa aaaagaacca tttggaatag aattctgcta gaataaaaag aaaacattga
      601 ggtatgaaat ggaagcgatt attacgaaag aattttttga agataagaca acaatcgaat
      661 tagcgagaga tatcttgggt atgcgtctag tacatcaaac ggatgaggaa attctatctg
      721 ggctaatagt ggaaacagaa gcgtacctcg gggcaacaga tatggctgca catagttttc
      781 aaaacctccg aacgaaacga acagaagtca tgttttcatc gccgggaaga atctacatgt
      841 accaaatgca tcgccaagtg ttgcttaatt ttataaccat gccaaaagga atcccagaag
      901 ccattctaat acgagccatc gaacctgacg aacaagctaa acaacaaatg gtacaaaatc
      961 gtcacggaaa aactggttac gaacttacca atggccccgg aaaattaacg caagctttag
     1021 gattaagtat gcaagattac gggaaaactc tttttgatag taacatttgg ttagaagagg
     1081 caaaattgcc gcatttaata gaagcaacta atcgaatagg ggtgccaaac aaaggaattg
     1141 caactcattt tccactcaga tttactgtta aaggcagccc atatatttca gctcaacgaa
     1201 aaagtcggat tcttaccgat atttggaagt gactttacaa ttttgtcaca ggtagagaaa
     1261 atagttttat ccagacactg attttctttg cttcataaga agag
//
LOCUS       DABQVC010000320         1301 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.322,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000320 DABQVC010000000
VERSION     DABQVC010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.322"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>1301
                     /locus_tag="IBJ56_002863"
     CDS             <1..>1301
                     /locus_tag="IBJ56_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3419096.1"
                     /translation="SGKTTFIENELKNNTNKVKDVAYFAQKNWKYKTSVEKYLHFPKT
                     NPSLVQKYCELFSVDNCYLEKDIQLLSGGEFVKVELVRTLALDSSIIILDEPTNNLDN
                     KSSEILANILSELAKTKIIYLVSHDTRLEHFFDKTIFVDKDRIEVSSNVEIEQNEIQV
                     NSKRVVSIGRILKYLLSSKFNFLMFAFIIVLTILLTNITSTIILRSVPIEENLTSDYN
                     FELMDIAENYSRYFNIEMTESEIEDEFQEPNHLTTNELIELQDKDYIKQIYVVDESYI
                     NEFVLDNSKFEVLALPEIITDSPNYVNAFPVTKMHLTKGRFPKDDAKEIALSFAQLKK
                     FFHDDISEESAIGNKLEFENELYEIVGIVNSPVAAISYSKQVSKGTVEVEDKTSEKLN
                     NILLKLEKENYDNPNFSIISIKLASKNQHELLNYLKVHGPS"
BASE COUNT          497 a          168 c          212 g          424 t
ORIGIN      
        1 aagcggaaaa acaaccttta ttgaaaatga attaaaaaat aacacaaata aagtaaaaga
       61 tgtagcttac tttgcgcaaa aaaattggaa atataaaact agtgtagaga aatatttaca
      121 cttcccaaaa actaatccga gcttagttca aaagtattgc gaattgtttt ctgtagataa
      181 ctgctactta gaaaaagata tccaattatt aagcggcgga gaatttgtca aagtagaatt
      241 agtgagaaca ttagctttgg actcttctat aattattcta gatgaaccta caaataatct
      301 agataacaag tcctcggaga tacttgctaa tattttaagt gaattagcaa aaacgaaaat
      361 tatttactta gttagtcatg atactcgatt ggagcatttt tttgataaaa ctatttttgt
      421 agataaagat aggatagaag tatcgtctaa tgttgaaata gagcagaacg agattcaagt
      481 taatagtaaa agagttgttt caattggaag aattttaaaa tatttactta gttcaaaatt
      541 taacttcttg atgtttgcgt ttattatagt actaacgatc ttattaacca atattacctc
      601 cactattatt ttacgatcag ttccaataga agagaattta actagtgatt ataactttga
      661 gttgatggat attgcggaga attattctag atattttaat attgaaatga cggaaagtga
      721 aattgaagat gaatttcagg aacctaatca tctcactaca aatgagttga ttgaattaca
      781 agacaaagac tatatcaaac aaatttatgt tgtagatgaa agctatataa atgaatttgt
      841 tttggataat tccaagtttg aagttttggc tcttccggaa ataattacag actcgcctaa
      901 ctatgtaaat gcttttcctg ttactaaaat gcacttaacc aaaggacgtt ttccaaaaga
      961 cgatgctaaa gaaatcgcgt tatcttttgc tcaactgaaa aaatttttcc atgatgatat
     1021 tagtgaagaa tcagctatag gtaataaatt agaatttgaa aatgagttgt atgaaatagt
     1081 cggtatcgtt aactctccag tagcagcgat ctcttattcg aaacaagtga gtaaaggaac
     1141 tgttgaggtt gaggataaga cttctgagaa attaaataat atattgttaa agcttgagaa
     1201 agaaaattat gataacccta atttttctat tatttccatt aaactagcta gtaaaaacca
     1261 acatgaactc ttaaactatt taaaagttca tggaccaagc t
//
LOCUS       DABQVC010000321         1298 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.323,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000321 DABQVC010000000
VERSION     DABQVC010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.323"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            112..819
                     /locus_tag="IBJ56_002864"
     CDS             112..819
                     /locus_tag="IBJ56_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAM3419097.1"
                     /translation="MNYQIFIDDVSCNDYDLCVAERPLLKTPEQDVEIREIRGRNGAF
                     IIPFAYKNVEEEISFNFLDDSKSFKQLFREAKRYFMNGKNLVFSDDPHVYRKIVHVSF
                     SDAENTVLEYGFFNVIFTLDPFQYANTNIIEINKGDLLVNEGTIESQPYMKIYATGDV
                     TLNISGNTFVFKDIDEYIELDCENLMVYKTVNDVIATADNKMFTPDFPVLNVGENYFD
                     WIGNIEKIEVNPYWRYV"
     gene            819..>1298
                     /locus_tag="IBJ56_002865"
     CDS             819..>1298
                     /locus_tag="IBJ56_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419098.1"
                     /translation="MIPILYESKNTDFENNGLGLLKDIITATVDETLNGPCELTIEYP
                     VTARLFDKISDESIFKVKSNEVQNFQLFRAYNIVRDEFTSSIIVKAKHITNDATSNFV
                     EDFTVENITPGAALNKLFSSTAYPSKFSGTSDIATLSSTSIQRKNPLEIIAGVEGSLL
                     "
BASE COUNT          462 a          182 c          235 g          419 t
ORIGIN      
        1 gaataataat ttatatggtg ctgctgatga agatagatta gtcaataaag tgaaacgcga
       61 aataactaat agtatgaatt ctaaaacaac agcatgggga ggtagaactt cgtgaattat
      121 caaatcttta tagatgatgt ctcatgtaat gattatgatt tatgtgttgc agaaagacct
      181 ttgctaaaaa cacctgaaca agacgttgaa attagagaaa ttagaggaag aaatggtgct
      241 tttattatcc cgtttgcata taaaaatgta gaagaagaga tttcatttaa ttttttagat
      301 gattctaagt catttaaaca actttttaga gaagcaaaac ggtattttat gaatgggaaa
      361 aaccttgtat tctctgatga tccacatgta tatagaaaaa ttgttcacgt atctttttcg
      421 gatgcagaaa ataccgtttt agaatacggc ttttttaatg ttattttcac tttagaccct
      481 tttcaatatg caaatacaaa tattattgaa attaataaag gtgacttact cgtcaatgaa
      541 ggaactatag aatcacagcc ttatatgaaa atttatgcga ccggagatgt tactttaaac
      601 atttcaggaa atacctttgt ttttaaagat attgatgaat atatagagct tgattgtgaa
      661 aatctgatgg tgtacaagac agtgaatgat gttattgcca cagctgacaa taaaatgttt
      721 actcctgatt ttccggtgct taatgtagga gaaaattatt tcgattggat tggaaatata
      781 gagaaaatcg aagtcaatcc ttattggagg tatgtgtaat gataccaatt ttatatgagt
      841 caaaaaatac agattttgaa aataatggat taggtctact aaaagacatt atcactgcaa
      901 cagttgacga aacattgaat ggaccgtgtg agttgacaat tgaatatcct gtaacagcaa
      961 ggctattcga taaaataagt gacgagtcta ttttcaaagt aaagtcaaat gaagtgcaaa
     1021 attttcagct tttccgagca tacaatatag tgcgtgacga atttaccagc tccattatag
     1081 tgaaggctaa acatattaca aatgatgcta cttcaaattt tgtagaagat ttcacggtcg
     1141 aaaatattac accaggtgcc gcattaaata aattgttttc ttctactgct tatccctcta
     1201 aattttctgg aacgtcagac atcgctacgt tatcaagtac tagtatacaa cgaaaaaatc
     1261 cccttgaaat tattgcggga gtcgaaggct ctctcttg
//
LOCUS       DABQVC010000322         1290 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.324,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000322 DABQVC010000000
VERSION     DABQVC010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.324"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..563)
                     /locus_tag="IBJ56_002866"
     CDS             complement(<1..563)
                     /locus_tag="IBJ56_002866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAM3419099.1"
                     /translation="MNKETERKLAASLTSQSIEILPFIPYFLQDFFELGSSPKDITYL
                     IKQHMPLSAESNFLDLACGKGAVSIGIAKELGNPVKGIDLIPAFIEEAKCKAKEAQVE
                     SLCQFEVGDVNKSVQNEKNYDAVIFGAAADILGNPAETLEKLQGTVKEGGYIIIDEAY
                     VPELAHNNQVKYQNYEYLTRNEWLNLF"
     gene            complement(591..1184)
                     /locus_tag="IBJ56_002867"
     CDS             complement(591..1184)
                     /locus_tag="IBJ56_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3419100.1"
                     /translation="MPKLVTGYERQQTKNLIIEHTSHLIYIKKGIQGFTVEDITRAAR
                     IGKRKFYTCFPSKEACLFEVVEYSYQAQLEAFKKIMEEKGSLKSKMTRFLKEVYLSEK
                     SINNYFSPEDFHAILQKLPPTYTEREERMTSEVLETAMTYIDLTRAQWEALVMLLDCL
                     TYTATRSYVETAKKAKEETLDILIHSIADYVEKQTQC"
BASE COUNT          362 a          262 c          191 g          475 t
ORIGIN      
        1 tcaaataaat tcagccattc gtttcgagtg agatattcat aattttgata cttcacctgg
       61 ttattgtgcg ctaattcagg cacataggct tcatctataa taatataacc gccttcttta
      121 acagttccct gcaatttttc caacgtttct gctggatttc caagtatatc cgctgctgca
      181 ccaaatataa cggcatcata atttttttcg ttttgaaccg atttatttac atctcctact
      241 tcaaattggc acagtgactc tacttgcgct tctttcgctt tgcattttgc ttcttctata
      301 aatgccggaa ttaaatctat tcctttgaca ggatttccta gttccttagc gataccaatg
      361 gaaacagcgc cttttccgca agctaaatcc aaaaaattac tttcagctga taacggcata
      421 tgttgcttaa ttaaataagt aatatctttc ggactactac ccaattcaaa aaaatcttgt
      481 aaaaaatacg gaataaacgg taatatttct attgattgag aagtgagtga cgcagcaagc
      541 tttcgttcgg tttctttatt catttattta ccctcctaaa atatttttcg ttagcactgg
      601 gtctgttttt ctacataatc agctatagaa tgtattaata tatccaaagt ctcttctttc
      661 gcttttttgg cagtttctac ataactcctt gtcgcagtgt aagttaaaca atctagtaac
      721 atcactaaag cctcccattg agctctcgta agatcgatat acgtcatggc agtttccagg
      781 acttcacttg tcattctttc ttctctttcc gtatatgttg gagggagttt ttggagtatt
      841 gcgtggaaat cttccggtga aaagtagttg tttatactct tttccgaaag atagacttct
      901 ttcaaaaaac gagtcatctt gctttttaac gaacctttct cctccataat ttttttaaat
      961 gcctctaatt gtgcttgata ggaatattcc acaacctcaa ataggcatgc ttctttggag
     1021 ggaaaacacg tatagaattt tctctttcca atcctagctg ctcgagtaat atcctccaca
     1081 gtaaaacctt gaattccttt ttttatataa attaaatggc ttgtatgttc gataatgagg
     1141 tttttagttt gttgacgctc atatcccgta acgagttttg gcattttgct cctccttaaa
     1201 aatttctcgc ataacgcttt taatggaact atttattaat ttccagttct acaaaaacac
     1261 cttaaactaa atatttaaca atgtcaaatg
//
LOCUS       DABQVC010000323         1279 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.325,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000323 DABQVC010000000
VERSION     DABQVC010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.325"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>1279
                     /locus_tag="IBJ56_002868"
     CDS             <1..>1279
                     /locus_tag="IBJ56_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HAM3419101.1"
                     /translation="KTKPKDNWFFSQWVNNKAIVSDNGADEQIYETKEFAFLQNEVIK
                     VAGNIDNVYGNKVNWNMELLNISPERTLSNPVITNRLEQGNTGAQFIKNSFQVINTKT
                     NEPINEENYDIIFEGNTFTIQFKNYTAMAPIKVSYSTISLLSGPISNETTVEAEDFSN
                     VPMFFKKRNAAVSPVFTVGSGSGIATIGTIKITKVDEDDTTKKLEGAKFQLYTLDGEK
                     SGQEIKTNSEGEILLDGIQSGKYKLVETEAPEGYNISDEYKEGKEITVNSSGEELLLT
                     IKNAMKKGKVILTKKDSASDEVLADAEFELQNAAGSKLKEKLTTAASGNIEITDLAPG
                     DYKLIETKAPAGYQLDATPVHFTIDFNQSEAAKVSKTNTAKTGTVVLTKKDSATNAKL
                     ADATFELRNEGGTVVRENLVTDDNGEISVADLAP"
BASE COUNT          511 a          210 c          259 g          299 t
ORIGIN      
        1 aaaacaaaac caaaagataa ttggttcttc tcacagtggg taaacaataa agctatcgtc
       61 tcagataatg gagcagatga acaaatatac gagacgaaag agtttgcttt tttgcaaaat
      121 gaagttatta aggtagctgg aaacatagat aatgtctatg gaaataaagt gaactggaat
      181 atggaactct tgaatatttc tccagaaaga acactgtcta atccggttat taccaatcga
      241 ttggaacaag gaaatacggg cgctcagttt attaaaaata gttttcaggt aattaataca
      301 aaaacgaacg aaccgataaa cgaagaaaat tatgatatta tttttgaagg aaataccttt
      361 accattcaat ttaaaaacta tactgcaatg gcgccaataa aagtaagcta cagcacaata
      421 agtttacttt caggaccaat ttctaacgaa acgacggtgg aagcagaaga ttttagtaat
      481 gttccaatgt tctttaaaaa aagaaatgca gcagtatcac cagtctttac agtgggatct
      541 ggatcaggga ttgcaacgat tggcacgatt aaaatcacaa aagtggatga agacgatact
      601 acgaagaaat tagaaggcgc aaaatttcag ctttacacac tagatggtga aaaatctgga
      661 caagaaataa aaactaattc agaaggtgaa attctactag atggtataca atctgggaag
      721 tataaattag ttgaaacaga agctccagaa ggatacaaca ttagcgatga atacaaagaa
      781 ggaaaagaaa ttactgttaa ttcatctggt gaggaacttc ttttaaccat caaaaatgct
      841 atgaaaaaag gcaaggttat tttaacgaaa aaggacagtg catcagatga agtattagca
      901 gatgccgagt ttgaattaca aaacgccgct gggtcaaaac taaaagaaaa actaacaaca
      961 gctgcgagcg gtaatataga aataaccgat ttagcaccag gcgactataa gttaattgaa
     1021 accaaagcac cagctggtta ccaattagac gcgaccccgg ttcatttcac aattgatttt
     1081 aaccagtcag aagcagcgaa agtaagcaaa accaacacag caaaaacagg cacggtagtg
     1141 ctaacgaaaa aagatagcgc aacaaatgcc aagctagctg acgccacatt tgagttacga
     1201 aacgagggcg gaacagtagt ccgtgagaat ctcgtaacag atgataatgg agaaattagc
     1261 gtagctgatt tggcaccag
//
LOCUS       DABQVC010000324         1279 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.326,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000324 DABQVC010000000
VERSION     DABQVC010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.326"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            49..444
                     /locus_tag="IBJ56_002869"
     CDS             49..444
                     /locus_tag="IBJ56_002869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactococcin 972 family bacteriocin"
                     /protein_id="HAM3419102.1"
                     /translation="MKRKVCVLAIALPTVLSPMGALAAQNLNEGETSLDSLMSANKTG
                     EKVIFSETTTGKKPLLKAAQSAGGGTFWVTWGQDRHYSNYQHYKKMHRSSASNFRTTV
                     RSRWEPKSNLASVWIKSSLWGNKANWATK"
     gene            507..>1279
                     /locus_tag="IBJ56_002870"
     CDS             507..>1279
                     /locus_tag="IBJ56_002870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="HAM3419103.1"
                     /translation="MKKFLSIIILVTLVIGNIMFFTFISNTLSRDFLFKDQTEVQFKY
                     KDDFQVLEVNNSIKQFSEANNINIAQYTFLDERDLNIYASNPQYSPNIKLEKGDYPDK
                     NRFLVNRESGDEKQSGVIYHPSKYWSLKVYDFGQIKNVGLSDTFYVSGLDNQDTYQAF
                     LKEFEQYGEITTKSVDVSWWKYINIPLLMTLLLCFAILFVFTYYYLRYSKQRLLVNRI
                     WGNSELVTLMSLFNKTIIFTLFSVLAILITFVSIVLANGL"
BASE COUNT          434 a          166 c          249 g          430 t
ORIGIN      
        1 atttggttat gcaatataac tattaattgg aaagaggggg agaatacaat gaagagaaaa
       61 gtatgtgttt tagcgatagc attgcctaca gtgttatcac cgatgggcgc cttagctgct
      121 caaaatctaa atgaaggaga gactagctta gattcactaa tgagcgcaaa taaaacaggt
      181 gaaaaagtga ttttttctga gaccacaaca ggaaaaaaac ctctattaaa agcagcgcaa
      241 tcagctggag gcggtacttt ctgggttaca tggggacaag atagacatta ttcaaattat
      301 cagcattata aaaaaatgca tagatcaagt gcctctaatt tcaggacgac agtaagaagt
      361 aggtgggaac caaagagcaa tctagcaagt gtttggatta aatcatcgct atggggtaat
      421 aaagctaatt gggctacaaa ataattccta taaagctaag aaattattat gtttcttagc
      481 tttatagtta aactaaggat gatttaatga aaaaatttct ttccattatc atattagtaa
      541 cacttgtcat tggtaatata atgtttttta cttttattag taatactttg tcgcgtgatt
      601 ttctttttaa agaccagaca gaagtgcagt ttaaatataa agatgacttt caggttttag
      661 aagttaataa ttctataaag caattttcag aagcgaacaa tattaacata gcgcagtata
      721 catttttaga tgaacgcgat ttgaatattt atgcctctaa tccccagtat tcaccaaata
      781 taaagcttga aaaaggagat tatcccgata aaaatcggtt tttggtgaat cgggaaagtg
      841 gcgatgaaaa acaatcgggt gtgatttatc atccttctaa gtattggtct ttaaaggttt
      901 atgactttgg acagattaaa aatgtgggtc taagtgatac tttttatgta agcggcttag
      961 ataaccagga tacgtatcag gcttttttaa aggaatttga acagtacggg gaaataacta
     1021 cgaaaagtgt tgatgtgagc tggtggaaat atattaatat cccgttactt atgactttgc
     1081 ttttgtgttt tgctattttg tttgttttta catattacta tttaagatac tctaaacaac
     1141 ggttattagt taatcgtata tgggggaatt ctgaattagt tacattaatg tctttgttca
     1201 ataaaactat aatatttact ttgtttagtg tgttagcaat tctgataact tttgttagta
     1261 ttgttttagc aaatgggct
//
LOCUS       DABQVC010000325         1266 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.327,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000325 DABQVC010000000
VERSION     DABQVC010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.327"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..1187)
                     /gene="mdrL"
                     /locus_tag="IBJ56_002871"
     CDS             complement(<1..1187)
                     /gene="mdrL"
                     /locus_tag="IBJ56_002871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdrL"
                     /protein_id="HAM3419104.1"
                     /translation="MMTDKEMNTGKWITAAASLLAFMGIGVVDPLLPSIAESIGASHS
                     QVEMLFTAYIFTMAIMMIPIGIVAGKLGDKKLIVIGLFIVTIFALLCGLSDTIGALSI
                     FRAGWGFGNSMFMATAMTMLIALSETPGHAIGIYEASMGLGMAFGPLLGGILGNISWR
                     YPFFATACLIFIAFLLILFKVKEPKKVAPAPTEKNEVAIKQMLHLFKYRPFLQIAFSG
                     MFYYYCFFTILAYSPLILGLSAIQIGFVFFAWGLCLALGSAKISHALEFRFNSKQILK
                     GSLLACAVILALLGFIDNTAVDIGLIVISGLILGINNALFTTTVMEHSPYARSVTSGA
                     YNFVRWLGAAFAPLCSGLLSEALGMKMPFIVASVICLAGMGLLFIKLKPSHFTLQQST
                     SIE"
BASE COUNT          468 a          266 c          189 g          343 t
ORIGIN      
        1 ctttctatag aagtagattg ttgtaaggta aaatgtgatg gttttagttt aataaatagt
       61 aatcccatgc ctgccaaaca aatgacgctc gctacgataa atggcatttt cataccaagc
      121 gcttcgctga gtaacccaga acaaagtggc gcaaacgcag cgcctaacca acgcacaaaa
      181 ttatatgctc cactagtcac acttcttgca tacggtgaat gttccataac agtggttgta
      241 aatagtgcgt tattgattcc taaaatcaag ccagaaataa caatcaaacc tatatctaca
      301 gctgtattat caataaatcc aagtaatgct aagataacag cacatgccag taaagatcct
      361 tttaatattt gtttgctatt aaaacgaaac tccaacgcat gtgaaatttt tgccgaaccc
      421 aacgccaaac ataatcccca agcaaaaaat acaaaaccaa tttgaattgc tgataaccca
      481 agaataagtg gcgaataagc taaaattgta aagaaacaat aataataaaa cattccacta
      541 aaagcaattt gtaagaatgg tcgatatttg aataaatgga gcatttgctt gatagcaacc
      601 tcatttttct ctgtaggtgc tggcgcgact ttcttcggtt cttttacttt aaataaaata
      661 agtaaaaatg cgataaaaat tagacaagct gtcgcaaaaa atggatagcg ccaagaaata
      721 ttacctagaa tacctcctag tagtggtcca aatgccatcc caaggcccat agaagcttcg
      781 taaatcccaa ttgcatgtcc aggtgtctct gataaagcaa taagcattgt catcgcagta
      841 gccatgaaca tagagttacc aaaaccccaa ccagcccgaa aaatagataa agcaccaatt
      901 gtatcagata aaccacataa taatgcaaaa atagtaacaa taaatagtcc gataacgatt
      961 aactttttat ctccaagctt tcctgcaaca ataccaatcg gaatcatcat aatcgccata
     1021 gtaaaaatat aagcggtgaa taacatttct acttgagagt gagatgcccc aatactttct
     1081 gcaatagaag gtaaaagtgg atcaacaacc cctattccca taaacgcaag caaactagct
     1141 gctgctgtta tccatttccc cgtattcatt tccttgtctg tcatcataat acaactacac
     1201 ttccctttcc aaataaaact caattattat attacgcttg ataaatacta atgtcaatat
     1261 ttacat
//
LOCUS       DABQVC010000326         1260 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.328,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000326 DABQVC010000000
VERSION     DABQVC010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.328"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(43..576)
                     /locus_tag="IBJ56_002872"
     CDS             complement(43..576)
                     /locus_tag="IBJ56_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAM3419105.1"
                     /translation="MNKQNELQSVLSNKKKVLIIGPNGAGKSTFAAKLGKCYDFEVCH
                     LDKLFWLENWNAVEKADFEDKVNGILRSEKKYIIDGDYFFNLEKRLEHADLVIWIKIP
                     LFLCVANIVKRRFKYMTNARPDVTEGCDEKLNLSFLLYALKYNKRSGKQTKGLLDNVY
                     DKELFVIDSYKKLKSYC"
     gene            complement(616..843)
                     /locus_tag="IBJ56_002873"
     CDS             complement(616..843)
                     /locus_tag="IBJ56_002873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3419106.1"
                     /translation="MAIVLRLDRVMADRKMSLNQLSQEVGVANVNLSKIKTGKVSAIR
                     FSTLNEICRVLNCQPGDILEYVADDSLETEL"
     gene            complement(858..>1260)
                     /locus_tag="IBJ56_002874"
     CDS             complement(858..>1260)
                     /locus_tag="IBJ56_002874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HAM3419107.1"
                     /translation="DTVFYFQTEFFSGVENQQYNQIEEWILVVIAAFSSVLIALLLWT
                     ASMIFKDLAAEFMPFSDLTVNRLRRIAGILLVYSLAPQIMYSVLHTVLIPGYSITFGL
                     NMSFFFAIIFYCLTEIFRYGASLQKESDETL"
BASE COUNT          432 a          255 c          155 g          418 t
ORIGIN      
        1 acaaccaata aacacttatc ccaagcattc attggctatt tatcagcaat aactcttcaa
       61 tttcttataa ctatcaatta caaacagctc tttatcatac acattatcca ataatccttt
      121 cgtttgtttt ccagaacgct tattatactt taaagcatac agcaaaaatg ataaatttaa
      181 tttttcgtca cagccttcag ttacatctgg tcgcgcattc gtcatgtatt taaatcttct
      241 tttaactata tttgctacac acagaaacaa tggaattttt atccaaataa ctaaatctgc
      301 atgttcgagt cttttctcca aattaaagaa ataatcacca tctataatat actttttttc
      361 agaacgcaga attccgttca ctttatcctc gaaatccgct ttttcaactg cattccaatt
      421 ctccagccaa aaaagcttat ctaaatgaca gacttcaaaa tcataacatt ttccaagttt
      481 tgcagcaaaa gttgacttac cagcgccgtt aggaccaatt attaatactt ttttcttgtt
      541 agataataca gattgcaatt cattttgttt attcatttac gcgctcctta tctaagtatg
      601 gctaatctaa cgcatttaaa gttcggtttc aagagaatca tccgctacat actccaaaat
      661 atcacctggt tggcagttta agactctaca tatttcattt agagtagaaa aacgaatggc
      721 gcttacttta ccagttttta ttttggataa gtttacattt gctacaccaa cttcttggga
      781 taactggttt aaagacattt tacggtcggc cattactcga tctagcctca atacaattgc
      841 catttttttc gctccaatca taaagtttcg tcggattctt tttgcaaaga tgctccataa
      901 cgaaatattt cagttaaaca ataaaaaata attgcaaaga aaaatgacat attcaaacca
      961 aaagtaatgc tataacccgg tatgagtact gtatgtaaaa cagaatacat aatttgcggt
     1021 gctagcgaat agacaagcaa tatccctgca attctccgca atctgttaac agtaagatcg
     1081 ctaaaaggca taaactcagc agctaaatct ttaaaaatca tacttgcggt ccatagtagc
     1141 aatgctatta aaacactaga aaaagcagct ataactacta aaatccattc ctcaatttga
     1201 ttatattgtt gattttccac accagaaaaa aattctgttt gaaaataaaa tacagtatct
//
LOCUS       DABQVC010000327         1247 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.329,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000327 DABQVC010000000
VERSION     DABQVC010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.329"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(17..202)
                     /locus_tag="IBJ56_002875"
     CDS             complement(17..202)
                     /locus_tag="IBJ56_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419108.1"
                     /translation="MIDEVEVLLAEIRKYDPEFSPKSTGKYLLTELQSRHLDYQMKHK
                     KRPKYKHRFANSIVNRW"
     gene            complement(205..447)
                     /locus_tag="IBJ56_002876"
     CDS             complement(205..447)
                     /locus_tag="IBJ56_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419109.1"
                     /translation="MARPVKNKHRPINFLYGVWTLEDFAQASPRTYGWWLDNIKDFPE
                     LAEFSNWATKNQREAWAFDAVKANNWLIKKFVYKEV"
     gene            complement(450..656)
                     /locus_tag="IBJ56_002877"
     CDS             complement(450..656)
                     /locus_tag="IBJ56_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3419110.1"
                     /translation="MSVEHQRFAVAVYAKLKAINMKQSDLAKTLNISNPYLSDIINGR
                     REALKVRKNIIEILALDIELEKGE"
     gene            923..1243
                     /locus_tag="IBJ56_002878"
     CDS             923..1243
                     /locus_tag="IBJ56_002878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3419111.1"
                     /translation="MTAFDRVKELCKKRGIAVSKLESDVGFGKNSIYSWKQNNPSSDK
                     LQKVADYFNVSTDYLLGRTDNPYLDDIPQEAAAIAAHIDPEATEEDMKKILEYIDFIQ
                     QKYK"
BASE COUNT          377 a          213 c          199 g          458 t
ORIGIN      
        1 actgtgggtt tttcttttac catcgattta caattgaatt cgcaaaacga tgcttgtatt
       61 ttggtctctt tttgtgtttc atttgatagt ctaagtgtcg agattgaagc tctgtgagta
      121 agtatttgcc cgttgattta ggactaaatt ctggatcgta ttttcgtatt tcggcaagta
      181 atacttcgac ttcatcaatc atcttcaaac ctccttatat acaaattttt taattaacca
      241 attgttagct ttcactgcat caaatgccca cgcttcacgt tgattctttg tagcccaatt
      301 gctaaattca gcaagttctg gaaagtcttt aatgttatcc agccaccaac cgtaagttct
      361 tggactagct tgtgcaaaat cttctaacgt ccatactccg tataaaaaat tgataggtct
      421 atgtttattt tttacaggac gagccatttt tattctcctt tctctaattc aatatctaat
      481 gctaaaatct cgatgatgtt ttttctcact ttcaacgctt cacgtctgcc gttgataata
      541 tctgataaat acggattgct aatattcaat gtctttgcta aatccgattg tttcatatta
      601 attgctttta gtttcgcgta aaccgctact gcaaaacgct gatgttctac tgacatgttt
      661 ttgctccttt ctatcaaatt agctaattat ttagcagatt gttgacaatt attaaagatt
      721 attgtagaat gtacacatag ctaaataagc cttattaaaa gccattaatc gttggggaac
      781 gactatcata tggtagtatt tgttgacttg tttagctaaa taattagctt atggatatat
      841 tatattaaag aattctatag aagtcaattg ttttctacaa ttttctttaa ttattttcca
      901 tatgcacacc taggtggttg ttatgacagc atttgataga gtaaaagaat tgtgtaaaaa
      961 acgtggtatt gctgtttcta agttagaatc tgatgttggt tttggcaaaa attctatata
     1021 ttcatggaaa caaaataacc cttcatctga taagctccaa aaagttgctg actacttcaa
     1081 cgtgtcaaca gattatttgc ttggtcgaac agataaccct tatttagatg acataccgca
     1141 agaagctgca gcaattgcag ctcatattga tcccgaagcg acagaggaag atatgaaaaa
     1201 aattcttgag tatattgatt tcattcaaca aaaatataaa taggaaa
//
LOCUS       DABQVC010000328         1221 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.330,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000328 DABQVC010000000
VERSION     DABQVC010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.330"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>1221
                     /locus_tag="IBJ56_002879"
     CDS             <1..>1221
                     /locus_tag="IBJ56_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419112.1"
                     /translation="SIVGNPFLTELTEANLETISVADISYMNGVPGYAVTGLISDLTG
                     LEKAVNMTKLYFSNQTEIKNLNQIKDLPNLKKIVGVTTGLNDIKALGEMPALEELELG
                     GDYITDFTPLLEKDNLKSFSYNSYAWLNPAYHQIDNEEFKKFTNLKSLESLDVTWNNI
                     TDLSSLTANDHITNLNLSYNKFTNIAPIATMKELKVLYLNNNNLTSIDSLNTLRGLTI
                     AYADNNNITDLSNLKDFFEGMDVVGDYKGLQVNNQTITLPTINIKEGGTAISNNPTLD
                     IDGEKMPVSSISDGGTVSTDNKTVSFTNLPVGNKTVTYKATFTATSTKGEPLSYSIKV
                     SQPINVSAQSDSTVNVFYKDENGDELAPSETISGKSGENYQTIEKTITNYTLKEIEGQ
                     PSGQFGDSDATVTYV"
BASE COUNT          465 a          209 c          179 g          368 t
ORIGIN      
        1 gagcatcgta ggaaatccat tcttaaccga attgactgaa gcaaatcttg aaaccattag
       61 tgtcgctgat atctcttata tgaatggagt acctggttat gctgtcactg gtttaattag
      121 tgatttaacc ggactcgaaa aagcagttaa tatgaccaaa ttatattttt caaaccaaac
      181 agaaattaaa aatttaaatc aaataaaaga tttacctaat ctgaagaaaa ttgttggtgt
      241 tactacaggt ttaaatgata ttaaagccct tggtgaaatg cccgcactcg aagaactaga
      301 attaggtggg gattatatta ctgatttcac ccccttactt gaaaaagata atttaaaatc
      361 attttcttat aactcgtatg cttggttaaa tccagcatat caccaaattg ataatgaaga
      421 atttaaaaaa tttacaaacc ttaaatcact cgaaagttta gatgtaactt ggaataacat
      481 taccgactta tcatcattaa ctgcaaatga tcatattaca aacttaaatc taagttacaa
      541 taagttcact aatatagctc caattgctac aatgaaagaa cttaaagtcc tttatttaaa
      601 caataacaac ctaacttcca ttgattcttt aaatacacta agaggattaa ctatagccta
      661 tgctgataat aataacatta ctgatttgag taatttaaaa gacttttttg aaggcatgga
      721 tgtcgttgga gattataaag gtttacaagt taacaaccaa actatcacac ttccaactat
      781 taatatcaaa gaaggtggaa cagctatttc aaataaccct actttagata ttgatggcga
      841 aaaaatgcct gtttctagca tttctgatgg cggaacagta tctaccgata ataaaaccgt
      901 ttcttttact aacttaccag ttggaaataa gactgttact tataaagcaa cattcacagc
      961 tacctccact aaaggagaac cacttagtta ttctattaaa gtatcgcaac caattaatgt
     1021 atctgcacaa tccgattcaa cagtaaacgt attttacaaa gatgaaaatg gcgatgaatt
     1081 agctccaagt gaaacaattt ctggtaaatc cggagaaaat tatcaaacaa tagaaaaaac
     1141 aattactaac tacacattaa aagaaattga aggccagcct tcaggacaat ttggcgatag
     1201 tgatgcaaca gtcacttacg t
//
LOCUS       DABQVC010000329         1217 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.331,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000329 DABQVC010000000
VERSION     DABQVC010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.331"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..623
                     /locus_tag="IBJ56_002880"
     CDS             <1..623
                     /locus_tag="IBJ56_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419113.1"
                     /translation="LPISNCCLINLKKEHIEDNIFNMDGINCVEGIGFASEYMQGNTR
                     INAGMLKSIINAEDIPSIILFDQIILNTDRSENDGNLYYDKRTKKLMIIDHSHIFGGW
                     STWNVHQIRALIKEPPAVINNLVGKNYHFFIPYVSGHSPFNKITKKIDHLAGEIDGLF
                     EDIPIEWSIDEEEIAVTKKFIRYQLENYAGILQQLKDVFYLWKGAC"
     gene            625..>1217
                     /locus_tag="IBJ56_002881"
     CDS             625..>1217
                     /locus_tag="IBJ56_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3037 domain-containing protein"
                     /protein_id="HAM3419114.1"
                     /translation="MENFKLNYAVLQYMPDPIRREAINVGVVFHCPSRNWSEFCPIKN
                     KSRLRSFDDEYDKEYIDMMFDSFDYEFNSHIIDEYPERFNRIENENFLKENIKFYVNE
                     FRFLPVESIHTNDSEFWNDIRDVERTFLYYDKPKSERISSRDVRELLRKNLANHNIKN
                     QIKNLDVRCEFGSKKVFDFMYEKNVFKAISFDKQKSG"
BASE COUNT          474 a          135 c          220 g          388 t
ORIGIN      
        1 atttaccaat atcaaattgt tgtttgataa atttgaaaaa agaacatatt gaggataata
       61 ttttcaatat ggatggtatt aattgtgtgg aaggaattgg cttcgcaagc gaatatatgc
      121 aaggtaatac tagaataaat gctggtatgt taaaaagtat tataaatgca gaagatattc
      181 caagtattat cttatttgat caaataattt taaataccga tcgttcagaa aatgatggga
      241 atttatacta tgacaaaaga acaaaaaaac taatgattat tgatcactca catatatttg
      301 gaggatggtc aacttggaac gtacatcaaa ttagggcttt aataaaagaa ccgcctgcag
      361 taataaataa cttagtaggg aagaactatc atttttttat tccatacgtt agcggtcata
      421 gcccttttaa taaaataaca aagaaaatag atcatttagc cggagaaata gatggacttt
      481 ttgaagatat tccgatagaa tggagtattg atgaagagga aatagcagta acaaaaaaat
      541 ttattagata tcaactagag aattatgctg gtatacttca acagttaaaa gatgtatttt
      601 atttatggaa aggagcatgt tgaaatggaa aattttaaat taaattatgc tgttcttcaa
      661 tacatgcctg atcctatccg aagagaggcc attaatgtag gagtagtttt tcattgccca
      721 agtagaaatt ggtcagaatt ttgtcctatt aaaaataaaa gtaggctaag gtcatttgat
      781 gatgagtatg acaaagaata tattgacatg atgttcgact catttgacta tgagtttaac
      841 tcgcacatta tagatgagta cccagagcgg tttaatagaa tagaaaatga aaacttttta
      901 aaagaaaaca ttaagtttta tgtcaatgag tttcgattcc ttccagttga gtcaattcac
      961 acaaatgatt cagagttttg gaatgatata cgagatgtgg aaagaacatt tttgtactat
     1021 gataaaccta aatcagaaag aatatcttct agagatgtta gagagttgtt aaggaaaaat
     1081 cttgcaaatc ataatattaa aaatcaaatc aaaaacttag atgtaagatg tgaatttggt
     1141 agcaaaaaag tttttgattt tatgtatgaa aagaacgttt ttaaagctat ttcttttgat
     1201 aaacaaaaaa gtgggca
//
LOCUS       DABQVC010000330         1210 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.332,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000330 DABQVC010000000
VERSION     DABQVC010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.332"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..>1210)
                     /locus_tag="IBJ56_002882"
     CDS             complement(<1..>1210)
                     /locus_tag="IBJ56_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAM3419115.1"
                     /translation="LATIFGVLIGIFSSKLFAMVLFWIVGLAIDAEFIISFKAIIDTI
                     LVFFGIMLFTSVYAVFLVLRYNLNQLFKNDDKEEKVAKGSLIFMLIGLALITFGYYLA
                     TRNIEESPIWLAYDFFDLILVILACVILGTWLMVRFGTPYVIRQLYNNKRFFYKGTNM
                     LGITSLRFRLKKNAGTIAMIAVLSATTLTIIGSMSSFYVRTINDISAENPSSYQVLNI
                     SAKNEKEIIQTIRDDQDHKLKKLMQAEMLSAEVEYKDIPKYKMHMDTFIHTIVSESEY
                     NRIGERQQSDFVESKKIAYGDAILLGKNTYYARSDIQEKWLTRKMVVQSNKSVAKKMP
                     PIKVVDFRENSIFNTGISYETLVVSDEYYDDLERLFPPESVTMFDITNPNHSESLDKK
                     VQTIVDGEPS"
BASE COUNT          416 a          236 c          178 g          380 t
ORIGIN      
        1 aatgaaggct ccccgtcaac gattgtttgc actttcttat ccaagctttc actatgattc
       61 ggattagtaa tatcaaacat tgtcacagat tcaggaggga aaagtcgctc caaatcatca
      121 taatattcat cggaaacaac cagcgtttca taagaaatcc ctgtattgaa aattgaattt
      181 tctcgaaaat ccactacttt tattggtggc attttctttg caactgattt atttgattgg
      241 acgaccattt tacgagtaag ccatttttct tgaatgtccg atcttgcgta ataagtattt
      301 tttccaagta agattgcatc accataggca atttttttag attcgacaaa atcactctgc
      361 tgcctttcac cgatacgatt atattctgat tccgatacaa tggtatgaat gaatgtatcc
      421 atatgcattt tatatttagg aatatcttta tattccactt cagcactaag catctctgct
      481 tgcatcaatt ttttcaattt atgatcttga tcatcgcgaa tcgtttgaat aatctctttt
      541 tcatttttag cagaaatatt gagcacttga taactggaag gattctccgc tgaaatatca
      601 ttaattgtac gcacataaaa actactcatg gagccgataa tcgttaacgt tgtcgcacta
      661 agaacagcaa tcatcgcaat cgtaccagca tttttcttta gcctaaaacg aagcgatgta
      721 atccctagca tattcgtccc tttataaaag aaacgtttat tattgtatag ttgtcgaatg
      781 acataagggg tgccaaatct aaccatcagc caggttccta aaataacgca agccagtatc
      841 actaaaatta aatcaaaaaa atcataggct agccaaatag gcgattcttc aatattcctc
      901 gttgccagat agtatccaaa agtgattaaa gctaacccaa ttaacataaa aattagtgaa
      961 cctttagcta ctttttcttc tttgtcatca tttttgaata gctgattcaa attataacgt
     1021 aatacaagaa aaactgcata aaccgatgtg aaaagcataa taccaaaaaa gaccagtatc
     1081 gtatcgataa tcgctttaaa tgaaataata aactctgcat caatcgcaag gccgacaatc
     1141 caaaataaga ccattgcaaa caatttagaa gagaaaattc caattaaaac gccaaaaata
     1201 gttgcaagca
//
LOCUS       DABQVC010000331         1195 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.333,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000331 DABQVC010000000
VERSION     DABQVC010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.333"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..1178)
                     /locus_tag="IBJ56_002883"
     CDS             complement(<1..1178)
                     /locus_tag="IBJ56_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HAM3419116.1"
                     /translation="MSLNIVIDGIFVGHKLGGVALAGINIAVPVFTIFTAISIWIGIG
                     AATQFSFAIGEKNVAKAQTIFTNAILAVVSITVIIGIIAFIFKVPLAYFLGANDDTIG
                     YVLEYMNILLVFGFALTLENILSIFVRNDGDPNLSMIALIVTAISNVILNYLFLFVFE
                     WGVTGSALATMIAIIIGVLILITHFFKKSSRLKFVKVDWNKAFFKKTLAIGLPSFLAE
                     VGVSVFTLGYNISIAAIAGTAGVAAFSVLNYTHSVILMLFLGMGSAIQPLISYYRGAK
                     ARQKEIETLKIAIMVAFSTGVGFLLVGLFGSNLLVSMFGNFSPEIKDLASNGIKLFYT
                     AYLFMGFNFVMMTYFQTSDKVKMATWITISREIIFMVIFLLVLPPIIGIPGVWLAIPI
                     S"
BASE COUNT          426 a          271 c          196 g          302 t
ORIGIN      
        1 gaaattggaa ttgctagcca aacgcccggg ataccaatga ttggtggcaa cactaatagg
       61 aagatgacca tgaaaataat ctcacgcgat atcgttatcc atgtagccat ttttaccttg
      121 tccgatgttt ggaaataggt catcataaca aagttgaagc ccatgaacag ataagctgta
      181 tagaataatt tgataccgtt acttgctaaa tctttaattt ccgggctaaa gttcccgaac
      241 atcgaaacga gcaagttgga accgaagaga ccaacgagca aaaagcctac tccagtgctg
      301 aacgctacca taatcgcaat tttcaacgtt tctatttctt tttgtctagc tttcgcgccc
      361 cgataataac taataagtgg ttgaatcgcg gaccccattc caaggaacag catcaaaatc
      421 acactgtgcg tataattgag taccgagaac gccgccacac cagcagtccc agcaatagcc
      481 gcaatcgaaa tattataacc tagcgtaaat acagacaccc caacttccgc taaaaagctc
      541 ggtaagccaa ttgctaaagt tttcttaaaa aacgctttgt tccagtccac tttgacaaat
      601 tttaaacgac ttgatttttt gaagaaatgg gtaattaaaa tgagtacacc gataatgatt
      661 gcaatcatcg tagcaagcgc agaacccgta acgccccatt cgaatacaaa taagaataaa
      721 tagttcaaaa taacattact gattgctgtt acaataagcg caatcatcga taaattagga
      781 tcgccatcgt tacgtacaaa aatacttaaa atattttcta gtgtaagcgc aaatccaaat
      841 acgagcagga tattcatata ctcgagcaca taaccaatcg tatcatcatt cgcacctaaa
      901 aaataagcta atggtacttt aaaaataaac gctataattc caataataac agtgattgaa
      961 acaacagcta gaatcgcatt ggtgaaaatc gtttgagctt tcgcgacatt tttctccccg
     1021 atcgcaaagg aaaattgagt cgcagcacca atcccaatcc aaatagaaat cgctgtaaaa
     1081 atcgtaaata caggcaccgc tatatttatg ccagccagcg ccactccgcc gagcttatgc
     1141 ccaacaaaaa ttccatcaat cacaatattt aaagacatta acaacattcc cacta
//
LOCUS       DABQVC010000332         1177 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.334,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000332 DABQVC010000000
VERSION     DABQVC010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.334"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            313..786
                     /locus_tag="IBJ56_002884"
     CDS             313..786
                     /locus_tag="IBJ56_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419117.1"
                     /translation="MTFLNTLKLNLENEKKRMLSDAFMKKQEGIIVNYIVTCSKDSAI
                     GISKKAIDILLIINENTFPEWPNVDRWLSILPKYFTDSFSKSKILHSEDWLFEEWLYW
                     FEPENRFWFLGELDPVDNEHLKISIVVQEHPFPVESLEVLLMKLGTSELHEIGME"
     gene            892..>1177
                     /locus_tag="IBJ56_002885"
     CDS             892..>1177
                     /locus_tag="IBJ56_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419118.1"
                     /translation="MENYVSIVKIENNLSVCFYNSSEKVVAIAKKMNEINEEAYMHGY
                     NWEAFFNYYLPKYAPDVLEGMGSDPEAGMYVAYYTLSPETEARAEKLVQVI"
BASE COUNT          440 a          150 c          226 g          361 t
ORIGIN      
        1 ccataggagt gtggtagctg attgcacagt aattatatac tttacgtcaa tatcaaaagc
       61 aagtccaatt aaaatggatt accttgcccc gtaaatgaca acttctgaaa ataggtaaaa
      121 ggaacaaaag atgatgtaat tagggtctag tgcatttgtg gtgaatttag gttttgatta
      181 taatgagaat ctccgtttag aggttgttct tttgaaaacg atagaagcaa ttataggtat
      241 cgactaccat atattactga aaaaagagct agattaaata aaaaaataat tctaacatca
      301 taggaggcaa ttatgacttt tttaaacacc ttaaaattaa atttggaaaa tgaaaaaaag
      361 agaatgttat ccgatgcttt tatgaaaaaa caagaaggaa tcattgtaaa ctatatagtg
      421 acttgcagta aggattctgc tattggcatt agtaaaaagg caattgatat attattgata
      481 atcaatgaaa atacatttcc tgaatggcca aatgtagata gatggctttc tattttgcca
      541 aaatatttta cggattcttt ttcaaaatca aaaatattgc atagtgaaga ttggctattt
      601 gaagagtggt tatactggtt tgaacctgaa aatagatttt ggtttttagg agaattagat
      661 cctgttgata atgagcattt gaaaataagc atagttgtac aagaacaccc ttttccagta
      721 gaatcattag aagttctact tatgaagcta ggaacaagcg aattacatga aattggtatg
      781 gaatgaggtt aaatgtactt ttaacggata tatcttttac aatagagctg aattttgtta
      841 gagtttaaaa tgaaaaaaca actaagttat aacgaaagga gctaacactt gatggaaaat
      901 tacgtgtcaa tagtaaaaat cgaaaacaat ctttccgtgt gcttttacaa cagctcggag
      961 aaagtagtag caattgctaa gaaaatgaat gagattaacg aagaagctta tatgcatggt
     1021 tacaattggg aagcattttt caactattat ttacctaaat atgccccaga tgtcttagaa
     1081 ggaatgggct ctgatccaga agcgggaatg tatgtggcgt attacacgct atcacctgaa
     1141 actgaggcac gagcagaaaa acttgttcaa gtaatta
//
LOCUS       DABQVC010000333         1160 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.335,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000333 DABQVC010000000
VERSION     DABQVC010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.335"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..400)
                     /locus_tag="IBJ56_002886"
     CDS             complement(<1..400)
                     /locus_tag="IBJ56_002886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3419119.1"
                     /translation="MTTKRKETRESVCYREIKKKIRNGELKPGDRLIENTLSQQLEIS
                     RTPIRKAIGMLAADGYVEYNDFRGAFVRDSIINKERYFEMTEIIGLFLKQAIQKIRTK
                     KIAFNKMRVVAKLVEIEREQPTDPATYFEYE"
     gene            complement(435..>1160)
                     /locus_tag="IBJ56_002887"
     CDS             complement(435..>1160)
                     /locus_tag="IBJ56_002887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419120.1"
                     /translation="YFKKLGSWNLVHSFIKGFWRAFFLVVLLLIIANIIVVYLLDNVF
                     LIPVILISLLCIPLFYYVLIYSRAKKFIRTRYQLRNFKELTVMRRYLLFAYLEKSGFS
                     SRDDLDKLLRFIHSEMAEEQKNHKPLSTIIGVFIAAFLAILGGTFLFLMDDVVERLIA
                     AVIIIVMAVVFYFIGLTLMSIIRSKSEKNTRKEHELTKEIIAIQTAMLVSENTSYHPF
                     LAMEKKVNENDFLKEIITSRSFL"
BASE COUNT          380 a          221 c          161 g          398 t
ORIGIN      
        1 tttcatattc gaaataagtt gctgggtcgg ttggttgttc gcgttcaatt tcgactaatt
       61 ttgcaacaac tcgcatttta ttgaaggcta ttttttttgt acggattttt tgaatagctt
      121 gttttagaaa caaaccaata atttctgtca tttcaaagta acgttcttta ttaataatgc
      181 tgtcccgaac aaaagcacct cgaaaatcgt tgtattccac atatccatct gcagcaagca
      241 tcccgattgc ttttcgaatc ggcgtacgac taatttctaa ttgttgtgat aatgtatttt
      301 caattaaacg atcgcctggc tttagttccc cgtttctaat cttctttttg atttcccgat
      361 aacaaacact ttctctagtc tctttgcgtt tggttgtcat gactttgcct cctaagtgtg
      421 cctaaaaaat tatgttataa aaaggaccgt gatgtaataa tctctttcaa aaaatcgttt
      481 tcattcactt ttttctccat tgctaaaaat ggatggtaac ttgtattttc actaacaagc
      541 attgccgttt gaatcgctat aatttctttt gttagctcat gctcttttct tgtgtttttt
      601 tcagatttcg agcgaataat cgacatcaac gtaagaccga taaaatagaa aacaacagcc
      661 atcacaatga taatcacggc tgcaataagc cgctctacta catcatccat caagaataga
      721 aatgtaccac ctaaaattgc taaaaatgct gctataaaaa cgccaattat cgtactaagt
      781 ggtttatggt tcttttgttc ttctgccatt tctgaatgaa taaatcgaag taatttatct
      841 aaatcatctc ttgagctaaa accacttttt tctaaatagg caaataataa ataacgccgc
      901 attacagtca actctttaaa atttcgtagt tgatatctgg tacgaatgaa ctttttcgca
      961 cgactataaa tcaatacgta ataaaagaga ggtatacaaa gtaaactaat taaaatcact
     1021 ggaatcaaaa acacattatc caacaaataa acgactataa tgttagcaat aattaaaagt
     1081 agcactacta aaaaaaacgc tctccaaaaa ccctttataa agctatgtac taaattccaa
     1141 ctgccaagtt ttttaaaata
//
LOCUS       DABQVC010000334         1141 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.336,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000334 DABQVC010000000
VERSION     DABQVC010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1141
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.336"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..643)
                     /locus_tag="IBJ56_002888"
     CDS             complement(<1..643)
                     /locus_tag="IBJ56_002888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HAM3419121.1"
                     /translation="MSCFYLDLLKIKDPSFMKQLDIQELEALAADIRAFLITSTSKSG
                     GHIGPNLGVVELTIALHYSFNSPKDKFIWDVGHQSYVHKILTGRASQFGTLREHGGLD
                     GFPKRKESIHDVFETGHSSTSLSAAAGMVIARDIKKEEFYVIPIIGDGALTGGMALEA
                     LNHIGDMGKDMIVILNDNDMSIAPNVGAIHNILGKLRTSDTFKQTKAKVDGTFF"
     gene            complement(810..1010)
                     /locus_tag="IBJ56_002889"
     CDS             complement(810..1010)
                     /locus_tag="IBJ56_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAM3419122.1"
                     /translation="MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQGDGFKSLDEG
                     QAVTFDVEEGQRGPQAANVQKA"
BASE COUNT          351 a          252 c          173 g          365 t
ORIGIN      
        1 caaaaaaagt accatcgact ttagcttttg tttgcttaaa tgtatcagag gtccttaatt
       61 ttccaagtat gttgtggatt gctcccacgt ttggcgctat cgacatatca ttatcattta
      121 aaataactat catatctttt cccatatcgc ctatatgatt caaagcctct aaagccatgc
      181 cacctgttaa ggcgccatca ccgattatcg gaataacata aaattcttcc tttttaatat
      241 ctctcgcaat aaccatcccg gctgcagcag acaaagaagt tgagctgtgc cccgtttcaa
      301 atacatcatg aatagattct ttccgctttg gaaatccatc taatcccccg tgctcacgta
      361 aagtaccaaa ttggctcgcc cttccagtta ggattttgtg cacatatgac tggtgaccaa
      421 catcccaaat aaatttatct tttggactat taaaagaata atgcaacgca atcgttagtt
      481 ctaccacacc aagattcgga ccaatatgcc cacctgattt agaagtagaa gtaattaaaa
      541 aagcgcgaat atctgccgca agtgcttcta attcttgtat atccaattgc ttcataaagg
      601 aaggatcctt tatttttaaa agatccaaat aaaaacaact cactttccaa agagccactt
      661 gcatgaatgt gtgcaaggtc ttttttctca attaattgtt cttattatag caaacaatca
      721 ccattaaacc aaacaaggta aaataatttt aggcaaataa aaaagcaaat caccgaaatg
      781 atttgctttt tcttattcaa aaaatagaat tacgcttttt gaacgttagc tgcttgaggt
      841 ccgcgttggc cttcttcaac gtcgaaagtt actgcttgac cttcgtctaa agatttgaat
      901 ccgtcgcctt ggatagcgct gaaatgtacg aatacatcgt caccgttttc gcgttcgata
      961 aaaccaaatc ctttttctgc gttaaaccat tttactgtac cttgttccat gttcatgttc
     1021 ctcctcgtgt gttatgcaca ctaattattt actattcttg cttaacggca cgagatggaa
     1081 agttgttcac aatcgtatct ttcacccaca aaaataatct tacattagta taacacggta
     1141 t
//
LOCUS       DABQVC010000335         1130 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.337,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000335 DABQVC010000000
VERSION     DABQVC010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.337"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..857)
                     /locus_tag="IBJ56_002890"
     CDS             complement(<1..857)
                     /locus_tag="IBJ56_002890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419123.1"
                     /translation="MSIVVEQLVMKDTGERWGSPYLLEQLKINLANTSADFVIVCSKS
                     DQNILSQIQDYLARFADNMVGADIHLFNQNPLFVQHLRKLPNEDSYEMTDTLQFLEET
                     IPNPTSTYLERDPHMLLEEVGQYILYNVAFLKAYFEKAEITHELINIFHKANMVWKHS
                     VLEETKKNEEKMKVPDNYLINDMVDCWSYYRNLENKYTSLSLELLDFDKNLFNYLIRT
                     KLGPIFQKKLMAEDLTEAVDAIDALTVFLETNNKRLVSELISLGYFYIQVPVKEYSHW
                     EKNKQFGTA"
     gene            complement(854..>1130)
                     /locus_tag="IBJ56_002891"
     CDS             complement(854..>1130)
                     /locus_tag="IBJ56_002891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-glycerol:glycerophosphate
                     glycerophosphotransferase"
                     /protein_id="HAM3419124.1"
                     /translation="FSLMNKPIYFFAYDIDDYLDERGFYFDYKATIPGEVFKDTPSLI
                     ESIKTGKYNYDELEVFKKKFVGSLDGNSTKRFVETYIVQANEEVKDL"
BASE COUNT          375 a          221 c          147 g          387 t
ORIGIN      
        1 taagccgttc caaattgttt atttttctcc caatgagaat actctttcac tggaacttgt
       61 atataaaagt aacctaacga aataagttca ctcacaaggc gtttattatt cgtttcaaga
      121 aaaacagtaa gcgcatcaat tgcatcaact gcctctgtta aatcttccgc cattaatttc
      181 ttttgaaaaa ttggacctag tttggttcga atcaaatagt taaataaatt tttgtcaaaa
      241 tcaagtaact ctaaacttaa agaagtatac ttgttttcca aatttcgata atacgaccaa
      301 caatcaacca tatcattgat caagtaatta tctggaactt tcattttctc ttcgtttttc
      361 ttcgtttctt ccaaaacact atgtttccaa accatattgg ctttatgaaa aatattaatt
      421 aattcatgcg taatctctgc cttttcaaag tacgctttca aaaaagcaac attatacaaa
      481 atatattgcc ccacttcttc aagcaacata tgtggatcac gttccaaata agtgctagtt
      541 ggattcggaa tcgtttcctc taaaaattgg agtgtatccg tcatttcata actatcttca
      601 tttggcaatt ttcgtaaatg ttgtacaaaa agagggtttt gattaaataa atggatatca
      661 gcaccgacca tattatcagc gaaacgagcg agatagtctt gtatttgcga aagaatattt
      721 tgatcgcttt tcgaacaaac aataacaaaa tctgctgatg tattagcaag atttatcttt
      781 agttgctcta acagataagg acttccccat ctctcaccag tatctttcat aacgagttgt
      841 tccactacaa tactcataaa tctttcactt cctcatttgc ttgaacaata taggtctcta
      901 caaaacgctt cgttgaatta ccatctaagc ttccaacaaa tttcttttta aagacttcca
      961 gttcgtcata attatatttt cccgttttaa tcgactcaat gagcgacggc gtatctttga
     1021 aaacttcacc aggaatagtt gctttgtaat cgaaataaaa tccgcgttca tccaaataat
     1081 catcaatatc atatgcaaag aaataaattg gcttattcat taaactaaat
//
LOCUS       DABQVC010000336         1120 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.338,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000336 DABQVC010000000
VERSION     DABQVC010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.338"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            15..482
                     /locus_tag="IBJ56_002892"
     CDS             15..482
                     /locus_tag="IBJ56_002892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobD family protein"
                     /protein_id="HAM3419125.1"
                     /translation="MVWDATNIFLFAANFLTVLYILYNDAVIPLWKGKTVLSVKLRSR
                     GRWDGYIFVGIIVLLFVSNTFFREGPFSTSVLLGIMGVLFIYICFFRSSKAVFKESGL
                     FYALLFFPYAKIERMNLSEDGVLVIETNRQRLMLFARSEKDLEKMLAVFTTYS"
     gene            complement(685..1035)
                     /locus_tag="IBJ56_002893"
     CDS             complement(685..1035)
                     /locus_tag="IBJ56_002893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419126.1"
                     /translation="MKKKKWLQLIMAVIVLCAIIFGIKWLLYRDNLVEMMQVDDTLYI
                     VSYEPAKQEDALEKIGEIEHRIRHYRIPNKNFTSNYLSEGTELYKAKNGDEFPRTILF
                     KEDGEYFIASEAMK"
BASE COUNT          306 a          205 c          183 g          426 t
ORIGIN      
        1 gagtgatagc taaaatggtt tgggatgcta ctaatatctt tttgtttgcg gcaaacttct
       61 tgacggtact gtatattttg tataatgatg cagtaattcc actttggaaa gggaagacgg
      121 ttttaagtgt caaattgcgt tctcgtggac gctgggacgg ttatattttt gttggaatta
      181 tcgttctgtt attcgtttcc aatacgttct ttcgtgaagg accattttcc acttctgttc
      241 tgcttgggat tatgggtgtg ttattcatct atatctgctt ctttcgcagt tcgaaagctg
      301 ttttcaaaga atccggactt ttttacgccc tgttattctt cccttatgca aaaatcgaac
      361 ggatgaattt gtctgaggat ggtgtgctcg tgattgaaac caatcgccag cgtttgatgc
      421 tctttgcaag atccgagaaa gatttagaaa aaatgctcgc tgtatttact acatatagct
      481 aaaaaacgcc acgcttactt ccctgttttt agggaaatga agcatggcga ttttttatgt
      541 tcactctact taaatttaga atcaatgatt tttcttaaaa atgaaaagta tgccaatcag
      601 tatactttta catatgttcc atttagttgt agacgataaa ctttctctat taagagaaaa
      661 aataaactaa cgctttttat taggctactt catagcctct gatgcaataa aatattcgcc
      721 gtcttcttta aacaaaatag tccttggaaa ctcatctcca tttttcgctt tataaagttc
      781 tgtcccttcg cttaaataat tagatgtgaa atttttattc ggtatccggt aatggcgaat
      841 tctatgctct atctcaccaa ttttctctaa agcatcttct tgctttgctg gttcatacga
      901 cactatatat aaagtgtcgt caacttgcat catttctaca agattgtctc tatataacaa
      961 ccattttatc ccgaatatta ttgcacaaag aactattact gccattatta attgcaacca
     1021 ttttttcttc ttcattctat tatctcactt ttcattttat ttattaccgc ttttaataaa
     1081 ccattccgtc acaatgttgg tatattttgt tgcaagatga
//
LOCUS       DABQVC010000337         1119 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.339,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000337 DABQVC010000000
VERSION     DABQVC010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.339"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..251
                     /locus_tag="IBJ56_002894"
     CDS             <1..251
                     /locus_tag="IBJ56_002894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HAM3419127.1"
                     /translation="RLVSIVGISNEERAKEKNVTATGIWLQPNGEQLKELGKLLANKT
                     VKPIVGATFPFSEKGVFDAHALSETHHAVGKIVISFNK"
     gene            346..879
                     /locus_tag="IBJ56_002895"
     CDS             346..879
                     /locus_tag="IBJ56_002895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAM3419128.1"
                     /translation="MEIRELKNGQIMMIREATKEDSSNIITYLNEVAGETDYLSFGQG
                     EFAFSIAEEAEYIEENDKNPGSVMLLCFIDDELASISQLMGHMKKRELHTSELAISIR
                     KKYWGLGIGTICMGELIKYAKSSEYLKLIYLEAVSENKRAINLYKKFGFIEAGEIPAL
                     MQVDSRYLDVTMMYLVV"
     gene            complement(876..1118)
                     /locus_tag="IBJ56_002896"
     CDS             complement(876..1118)
                     /locus_tag="IBJ56_002896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419129.1"
                     /translation="MHPIEQLLANNNTTTTDVESNTRLKEGSLQKIIDKDIRTSDISL
                     RILSQIAIFLNTGADIIAKQLSDIEVVSDLVFLIED"
BASE COUNT          380 a          154 c          241 g          344 t
ORIGIN      
        1 ggcgtttagt tagtatcgtc ggtatttcaa atgaagaacg tgcgaaagaa aaaaatgtaa
       61 cagcaactgg aatttggttg caaccaaacg gcgaacagct gaaagaactt ggcaaattgc
      121 ttgctaataa aacggttaaa ccaatcgtcg gcgcaacttt cccattctct gaaaaaggtg
      181 tttttgatgc acatgcatta agcgaaacgc accacgcggt tggaaaaata gtcatttcat
      241 ttaataaata agattttcgg aaagctagat gctatcatct agcttttttt gttgtttgct
      301 ggaataagtt agatgggcta taatagcaaa aaaggtggtg tctagatgga aataagagaa
      361 ttgaagaatg ggcaaataat gatgattcgg gaagctacaa aagaggactc tagtaatatt
      421 attacttatt taaatgaagt agctggtgag acagattatt tatcatttgg tcaaggtgag
      481 tttgcgttta gtatagcgga agaagctgaa tacatagaag aaaatgataa gaacccaggc
      541 tctgttatgt tgttatgttt tattgatgat gaacttgcga gtatttctca acttatgggg
      601 catatgaaaa agcgagaatt acatacttct gaactagcta tttcgatacg gaagaaatat
      661 tggggtctag gtattggcac aatttgcatg ggtgaattaa taaaatacgc taaaagtagc
      721 gagtatttaa agcttatcta tttagaagct gtatcagaga ataaacgcgc aattaatttg
      781 tacaaaaaat ttggatttat cgaagctggt gaaattccag cgttaatgca agtggacagc
      841 cgttatttag atgtaaccat gatgtatttg gttgtttagt cttcaataag aaagactaga
      901 tcactaacta cttctatatc actaagttgc ttcgcgataa tatcggctcc agtgttaaga
      961 aaaatagcaa tttgactaag aatacgaagg ctaatgtcag aagtacgaat atctttgtca
     1021 ataattttct gtaaagagcc ttcttttaag cgagtattgg attcaacatc agtggtagta
     1081 gtgttattat ttgctaacaa ttgttcaatc ggatgcatc
//
LOCUS       DABQVC010000338         1107 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.340,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000338 DABQVC010000000
VERSION     DABQVC010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.340"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..469)
                     /locus_tag="IBJ56_002897"
     CDS             complement(<1..469)
                     /locus_tag="IBJ56_002897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin"
                     /protein_id="HAM3419130.1"
                     /translation="MKAKNNFFKQLISIMTVLSLLFMVLGIQGNNEVKAATLATPPAP
                     INQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLE
                     YLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS"
     gene            complement(697..1107)
                     /locus_tag="IBJ56_002898"
     CDS             complement(697..1107)
                     /locus_tag="IBJ56_002898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusG domain II-containing protein"
                     /protein_id="HAM3419131.1"
                     /translation="MKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVAVISQ
                     DGKVVREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSK
                     AGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN"
BASE COUNT          319 a          216 c          167 g          405 t
ORIGIN      
        1 cgctaatatt atcttcatta agatatagct cccttaaatt agttaagttt tgcaaggcac
       61 taatatcagt gattttatta gttccaatat acagattcgt taatttaact aaattactta
      121 atgggctaat atcagtaatt tggtttccat taaggtttaa gtactccaaa ttagttaaat
      181 actcgatccc ttgaatggag gctacttttt ccccggctac tactaatttc gtaatgcttt
      241 ctaattcttc ttgtgtcact acatctgtga cacttgcttt ttgaagcact gctcgtattc
      301 cttctgctaa atctgcatct gggaaaattt gattaattgg agctggtggc gtggctaaag
      361 ttgctgcttt aacctcatta ttaccctgaa tacctaatac catgaacaaa aggctcaaga
      421 cagtcattat ggaaattaat tgtttaaaaa aattattttt cgctttcatt ttagtacctt
      481 ccttcaacta agcttactta caatcattat tatggcttat tgattgtaac accgtatttt
      541 gaagtagttg tctaatttta atatgcaaat ttccgcttct tatttttgtt tcttagatac
      601 ctaagtagca accatgaaaa cacgtgacat aaatttgaca ataattttta aattagttgg
      661 ttcaaacaaa aaaacacact aatcgcttag tgtgttttaa ttcggcacaa ttaaatctgt
      721 atcggggtct ttgctttttt tgtttgtcga ttttatctct acgaaaactt tatgtggtaa
      781 acaaacaatg gtgtcaccgg ctttggattt ccagcccatt ttgacgccta cttggtctgg
      841 actgttgtct tcttttattc gaatccgctc gccatctact tccatcaaat tatattgcgc
      901 gccttttcct ttaatcgtaa actgctcatt tcctttgtgc ccagttagcg ggatttcccg
      961 aaccactttg ccatcttgtg aaataactgc tacgacatca tcgcccacgt gctttgcttc
     1021 agcgacagaa aataatatta gtggtaaaaa cgaacccaag attagtaaaa taataattac
     1081 aaaatcaaac ggacgtacca ttttcat
//
LOCUS       DABQVC010000339         1102 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.341,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000339 DABQVC010000000
VERSION     DABQVC010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.341"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            68..442
                     /locus_tag="IBJ56_002899"
     CDS             68..442
                     /locus_tag="IBJ56_002899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419132.1"
                     /translation="MVKWHKIYTYSERVEQWDNQTIIEMPSESEYEGYFFLLPKKMVY
                     SLTPEYSYFYFPDTWNFFLKKHTEKKELSVSNMILCFKKENDEIMQFFHTKKVNDSIV
                     KVRTHIPKKIEKDVIVENDLIR"
     gene            420..>1102
                     /locus_tag="IBJ56_002900"
     CDS             420..>1102
                     /locus_tag="IBJ56_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase SNF2"
                     /protein_id="HAM3419133.1"
                     /translation="MKMTLLDNQKQALIKLKKYKVGALFMKPGSGKTRVACELINDVN
                     PDYVLWITPFQTKENLEIEISKWGYSFPQEIIGIESLSNSDRLYLYCRNKLKNSTNSY
                     IIMDESLKIKNIHALRTQRAIKLSRLATYKLIMNGTPLSRNILDLWSQLEFLSPKILN
                     LSFSQFKKTFCEYVTITQLTQSTQQSMDIIKKYHNLEYLYKLITPFIFTSSHELAVKW
                     HYIRHDFSI"
BASE COUNT          437 a          186 c          158 g          321 t
ORIGIN      
        1 taaaataaac gcataaatag ataaaagtga acgaaaacga caaaacacat aggagcatta
       61 gatataaatg gtaaaatggc acaaaattta tacatatagc gaacgagtag aacaatggga
      121 taatcaaaca attattgaaa tgccctctga aagtgaatat gaaggttatt ttttcttgct
      181 acctaaaaag atggtgtatt cacttacacc agaatatagt tatttttatt ttccagatac
      241 atggaacttc tttttaaaaa aacacacaga aaagaaagaa ctaagtgtct ccaatatgat
      301 tctttgcttt aaaaaagaaa atgacgagat aatgcagttt ttccacacaa aaaaagtaaa
      361 cgatagcatt gtcaaagtgc gtacccatat tcctaaaaaa atagaaaaag atgtgatagt
      421 tgaaaatgac cttattagat aaccagaaac aagcattaat aaaactcaaa aaatataagg
      481 ttggcgctct atttatgaaa ccaggaagtg ggaaaacacg ggtagcttgc gagttaataa
      541 atgatgtaaa cccagattat gttttatgga ttaccccttt tcaaactaaa gaaaatctcg
      601 aaattgaaat aagcaaatgg ggttattcat tccctcaaga aattatcggc attgagtctc
      661 tctccaactc agatagatta tacctgtatt gccgaaacaa actcaaaaat tccaccaata
      721 gttacattat tatggatgaa agcctaaaga taaaaaatat ccatgcactt cgaacacaac
      781 gagcgattaa actttctcgt ctggctacct ataaattaat tatgaacggc acacctctta
      841 gtcgtaatat tttggattta tggtcacagc tagaatttct atctcctaaa atattaaatc
      901 taagtttttc ccagttcaaa aaaacttttt gcgaatacgt caccattaca caactaacac
      961 aaagtacgca acaatcaatg gatatcatta aaaaatatca taatttagag tacttatata
     1021 aattaatcac cccttttata tttacttctt cgcacgaatt agccgtcaaa tggcattata
     1081 ttcgtcatga tttttccatt ga
//
LOCUS       DABQVC010000340         1090 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.342,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000340 DABQVC010000000
VERSION     DABQVC010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.342"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            32..895
                     /locus_tag="IBJ56_002901"
     CDS             32..895
                     /locus_tag="IBJ56_002901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliC/FljB family flagellin"
                     /protein_id="HAM3419134.1"
                     /translation="MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAA
                     GLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSF
                     SDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDLIN
                     IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLG
                     AGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQ
                     TPQMLTQLINS"
BASE COUNT          366 a          214 c          189 g          321 t
ORIGIN      
        1 tttctaaacc gaatgtagga gggaaacaca aatgaaagta aatactaata tcattagctt
       61 gaaaacacaa gaatatcttc gtaaaaataa cgaaggcatg actcaagcgc aagaacgttt
      121 ggcatctggt aaacgtatta acagttctct tgatgacgct gctggtcttg cagttgttac
      181 tcgtatgaac gttaaatcta caggcttaga tgcagcaagc aaaaactcat ccatgggtat
      241 tgacttgtta caaacagcgg attcagctct tagctccatg agttcaatct tgcaacgtat
      301 gcgtcaatta gcagtacaat cttctaacgg ttcattcagt gacgaagatc gtaaacaata
      361 cactgctgaa ttcggtagct tgatcaaaga acttgatcac gttgctgaca ctactaacta
      421 caacaacatc aaattactag atcaaactgc tacaggtgct gctactcaag taagcatcca
      481 agcgtctgat aaagctaatg acttaatcaa tatcgatctt ttcaatgcga aaggtctttc
      541 tgctggaaca atcactttag gtagtggttc tacagttgct ggttatagtg cattatctgt
      601 tgctgatgct gattcttctc aagaagcaac ggaagctatt gatgaattaa tcaataacat
      661 ctctaacggt cgtgcacttc taggtgctgg tatgagtcgc cttagctaca atgtatctaa
      721 cgtgaacaac caatccatcg caactaaagc atctgcttcc tctattgaag atgcagatat
      781 ggctgctgaa atgtccgaaa tgactaaata caaaattctt acacaaacat ctatcagcat
      841 gctttctcaa gcaaaccaaa caccgcaaat gttaactcaa ttaattaaca gctaataaca
      901 tatcaaattc atttatcgaa cattgtttac ccttagcccc tcgtcacccc ggacgagggg
      961 cttttctttt tatttataaa aatatttttg gattacaaat agggcgcaga gccaaagtta
     1021 agatagttaa ctatttttta aataatttta ttataaaaaa cggatatttt ttaagaaaaa
     1081 ggtagaaatt
//
LOCUS       DABQVC010000341         1080 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.343,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000341 DABQVC010000000
VERSION     DABQVC010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.343"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(45..>1080)
                     /gene="uhpT"
                     /locus_tag="IBJ56_002902"
     CDS             complement(45..>1080)
                     /gene="uhpT"
                     /locus_tag="IBJ56_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HAM3419135.1"
                     /translation="QATVGILFILWGANGFVQSPGGPASYSTITRWTPKLKRGRWLGF
                     WNASHNIGGALAGIVAFWGATTFFNGGAGGMFIVPGIIAIIIAIICFSVGHDEPEELG
                     WNSAAEIFEEREEQGESETKDLSRFQILCRFVINNPWVWTLCVINIFIYIVRIGIDNW
                     APVYCIQALGWSTKDAIMTISFFEIGALLGSLSWGWLSDIMKGRRMLCSIIAVVIEFF
                     MLISYSQVTSVYSMYTVLFILGFLVFGPQLLIGVSVIEFVPRNALAVTNGLTGTFAYL
                     FGDSFAKVFLGYIADPTKAGIQIFGYTLHGWGATFTIMFTALIIAGLMMIPVALKQEK
                     IIRQAKVLHL"
BASE COUNT          362 a          244 c          167 g          307 t
ORIGIN      
        1 taccttttta gtaattagtt tatcttcact cattactttt caacttatag atgtaaaact
       61 tttgcttgtc ggatgatttt ctcttgtttt aatgcaactg gaatcatcat taagcctgca
      121 ataattaaag ctgtaaacat aatggtaaaa gttgcgcccc agccgtgtaa agtatagcca
      181 aatatttgta tacccgcttt tgttgggtct gcgatatatc ctagaaagac tttagcaaaa
      241 gaatctccga ataagtatgc aaacgttcca gttaagccat ttgttacagc taaagcattt
      301 ctaggaacaa actctatcac cgacacgcca attaaaagtt gggggccaaa tactaagaat
      361 cctaaaataa ataataccgt atacatgcta taaacacttg taacttgcga gtaactaatt
      421 aacatgaaaa attcaatgac aactgcaata atagagcaaa gcatacggcg gcctttcata
      481 atatctgaga gccagcccca cgataatgaa cctagcaatg ctccaatttc aaaaaaagaa
      541 atagtcataa ttgcatcttt tgtgctccat cctagcgctt gaatacaata aacgggcgcc
      601 caattatcaa taccaattct aacaatatag atgaatatat ttatgacaca taaagtccat
      661 acccaaggat tattaataac aaatcgacac aaaatttgaa atctagaaag gtcttttgtc
      721 tccgattctc cttgttcttc tcgctcttca aaaatttcag cggcagagtt ccatcctaat
      781 tcttctggtt catcatgccc cacggagaag caaataattg caatgatgat cgcaatgata
      841 cccggaacga taaacattcc ccctgccccg ccattaaaga aagtagtcgc accccaaaaa
      901 gcaacaattc ccgctaaagc accacctata ttatgcgagg cattccaaaa gcctaaccat
      961 cttcctcttt tcaattttgg cgtccatcgt gtgatagttg aataggaagc cggtccacct
     1021 ggtgattgca caaatccatt tgctccccaa aggataaaca atatacccac tgttgcttgc
//
LOCUS       DABQVC010000342         1051 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.344,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000342 DABQVC010000000
VERSION     DABQVC010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.344"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(25..945)
                     /gene="rnz"
                     /locus_tag="IBJ56_002903"
     CDS             complement(25..945)
                     /gene="rnz"
                     /locus_tag="IBJ56_002903"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HAM3419136.1"
                     /translation="MELVFLGTGAGVPSRGRNVTSIALSMLNERNTIWLFDCGEATQH
                     QIMRSQIKLSKLEKIFITHMHGDHIFGLPGLLSSRSFQGGDSNLTIYGPAGIAEYVET
                     SLRLSGTRLTYKINFEEIEPGLIFEDEMFLVTADDLDHGVRSFGYRIVEKDKQGALNA
                     EKLKADGVEAGPVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETANE
                     LELALNADILVHEATFEGDKAKMAGEYMHSTTLQAANLAKTANVKKLILTHISSRYDR
                     DASKELLIEAKTIFENTEIAYDLAVFPIGE"
BASE COUNT          294 a          218 c          171 g          368 t
ORIGIN      
        1 ttcttcaaaa aagggttcat tttgtcactc tccaattgga aaaacagcta agtcataagc
       61 tatttcagta ttttcaaaaa tagtttttgc ttctattaat agttctttac ttgcatctcg
      121 atcatatctt gagctgatat gggttaaaat taattttttg acattggcgg ttttagcaag
      181 attggctgct tgaagcgttg tagaatgcat gtattctcct gccatttttg ctttatcgcc
      241 ttcaaacgtt gcttcatgaa ccaaaatatc ggcattcagt gctagttcta gttcgttagc
      301 agtttctttt gtatcaccaa aaatactaat aatcttccct ttttgcggct ctccgatata
      361 atttttacca tcaatgacgc gtccatcagc taatgttacg atttcgccgt ttttcagctt
      421 ttgaaaaacc ggtcccgctt cgacgccgtc cgcttttaat ttttcagcat tgagtgcacc
      481 ttgtttatct ttttcgacaa tacggtaacc aaagctacgt acgccatgat caagatcgtc
      541 agctgtaact aaaaacattt catcttcaaa aatcaaacct ggctctattt cttcaaaatt
      601 aattttatat gtaagccttg ttccactgag tcttaaggaa gtttcgacat attctgctat
      661 tccggcagga ccgtaaatag tcaaattaga gtcccctcct tgaaaagaac gactacttaa
      721 taagcctggc agtccaaaaa tgtgatctcc gtgcatgtga gtaataaaga ttttttctag
      781 tttactaagt ttaatttggc ttcgcatgat ttggtgttgt gttgcctctc cgcaatcaaa
      841 tagccaaatt gtatttcgtt catttaacat tgaaagtgcg atggatgtga cattacggcc
      901 tcgcgacggt acgcctgctc cagttcctag aaaaacaagt tccataatct gtttcattcc
      961 cttcccagtt cgtgtcttat tttatcatat tcttaaacga acaggaaata aacatttcta
     1021 agaaaaaacc cttataattc agaaataact g
//
LOCUS       DABQVC010000343         1042 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.345,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000343 DABQVC010000000
VERSION     DABQVC010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.345"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..315
                     /locus_tag="IBJ56_002904"
     CDS             <1..315
                     /locus_tag="IBJ56_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HAM3419137.1"
                     /translation="ALQNQLLVNLLKSVTRKFEYIGEKVRMVSEDSVRAKISNYLFGI
                     QDDDGSIELTETREEIADYLDITRPSLSRELGRMQKENIIRIEGSSVIILDAIIFDTF
                     IE"
     gene            396..1007
                     /locus_tag="IBJ56_002905"
     CDS             396..1007
                     /locus_tag="IBJ56_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid 7-alpha dehydratase"
                     /protein_id="HAM3419138.1"
                     /translation="MLLTRNEPFTAEKIQAKTDILELVQFERFCRDNALWDEMETCFT
                     KDSNVKISWFQGTGHGFIEASKKMTNPAPHKIYNTQVWINNDRAVAIMQATIQTRTII
                     NGVEMELNSDAKLVTRVERIEGRWYINAFEGVYEKDSLMPIIPSKLADVPAELLANFR
                     KSYACLALSLTLNGYEIDNNLPGIDRPEQVAQFFKEADEWLLQ"
BASE COUNT          365 a          169 c          205 g          303 t
ORIGIN      
        1 gctttacaaa accaactatt agtcaattta ttaaaaagtg ttactagaaa atttgaatat
       61 ataggtgaaa aggtacgaat ggtttcagaa gactctgttc gtgcaaaaat aagcaattat
      121 ttatttggca tccaagacga tgatggcagt atcgaattaa cagaaacaag agaagaaatt
      181 gccgactatc ttgatattac aagaccttca ctttcgagag aacttggcag aatgcaaaaa
      241 gaaaatatta ttcgtatcga aggaagtagc gttattattt tagatgcgat tatatttgat
      301 acttttattg agtaactagt aaccagcgtt acatcttttc gtatgcggta atggtaagct
      361 attcgtatta aaagaatgaa tacggaggag attagatgtt attaactaga aacgaacctt
      421 ttaccgcaga aaaaatacaa gcaaagacag acatccttga gctagttcaa tttgaacgat
      481 tttgtcgcga caatgcactt tgggatgaaa tggaaacttg ctttacaaaa gattcaaacg
      541 taaaaatttc atggtttcaa gggactggcc atggctttat tgaagcatca aagaaaatga
      601 ccaatcctgc gccacataaa atatataata cgcaagtttg gattaataac gatcgagctg
      661 tggcaattat gcaagccact atccaaacac gcaccatcat taatggagta gaaatggaac
      721 tcaattctga cgccaaatta gtcacacgag ttgagcgaat cgaaggcaga tggtatatta
      781 atgcgtttga aggagtttat gagaaagact cgttgatgcc aatcattccc agtaaacttg
      841 cagatgttcc tgctgagttg ttagctaatt ttagaaaaag ctatgcttgc ctagcacttt
      901 cattaacatt aaacggttat gagattgata ataatcttcc cggcattgat cgcccggagc
      961 aagtggctca atttttcaaa gaagctgatg agtggttgct ccaataattt aaaaaggata
     1021 gctagttttt actagctatc ct
//
LOCUS       DABQVC010000344         1036 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.346,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000344 DABQVC010000000
VERSION     DABQVC010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.346"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..554
                     /locus_tag="IBJ56_002906"
     CDS             <1..554
                     /locus_tag="IBJ56_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAM3419139.1"
                     /translation="PRGIIGEITTKIWSSYFEDLSKWTISNTELSNVTQVLDIGYGGG
                     SNVKNLAELNKNWTIYGVDISEESYKTATNLNKKAINNGKVELSVQDVASMNYQAGIF
                     DVVYAIQTHMYWDNPKKGFEEIYRVMSQKGVLIVSSEKDKIDYHMDEYKTTATLTVLL
                     KEIGFREVVEKEKGNWVLYTIRK"
     gene            645..>1036
                     /locus_tag="IBJ56_002907"
     CDS             645..>1036
                     /locus_tag="IBJ56_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419140.1"
                     /translation="MIKLYKKEQNQILYAKYWINNDKAIVHFGKIGKVGQKEETSNYL
                     EKYKSKAAFHEAFINRFVPQSYSENPPNENFWILIQYPLKSLTRTKRDIWLKDRVTDV
                     LNDDLGWKGLGIVDGFDIGQTANPNKQFA"
BASE COUNT          398 a          138 c          207 g          293 t
ORIGIN      
        1 atccgcgtgg gattattggt gaaatcacta cgaaaatatg gtcatcctat tttgaagatt
       61 tgagtaagtg gacaattagt aatactgaac taagcaatgt tacacaggta ttagatattg
      121 gttatggtgg gggctccaat gttaaaaacc tagcggagct aaataaaaat tggactattt
      181 acggagtgga tatttctgaa gaatcttata aaacagccac aaatttgaat aaaaaagcaa
      241 tcaataatgg caaagtagag ctatctgtac aagatgttgc atcgatgaat tatcaagcag
      301 gtattttcga tgtagtttat gctatacaaa cccatatgta ttgggataat cctaaaaaag
      361 ggtttgaaga aatctatcgg gtaatgtcac aaaaaggtgt tttaatagtg tcgtctgaaa
      421 aagataaaat tgattatcat atggacgaat ataaaacaac tgccactcta acagtactct
      481 taaaagaaat tggctttaga gaagtagtgg agaaagaaaa gggaaattgg gttttgtata
      541 caatcagaaa ataattgcga gttatattat cttttgaaat atctgttaca atgaataaaa
      601 ctctctaata cagagtccaa ttttatacat catgaggtga aaacatgata aagctataca
      661 aaaaagaaca aaatcaaatc ttgtatgcta agtactggat aaataatgat aaggcaattg
      721 tgcacttcgg taaaattggt aaagtaggac agaaagaaga aaccagcaac tatctggaaa
      781 aatacaagag caaagctgcg ttccatgagg cgtttattaa tcgatttgtc ccacaaagtt
      841 atagcgaaaa tcctccaaat gaaaatttct ggatattaat tcaatatccg ctcaaaagtt
      901 taacaagaac aaaacgtgat atttggctga aagatcgagt aacagatgtt ttaaatgacg
      961 atttggggtg gaaaggttta gggattgtag atggttttga cataggtcaa accgcgaatc
     1021 ctaacaagca atttgc
//
LOCUS       DABQVC010000345         1026 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.347,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000345 DABQVC010000000
VERSION     DABQVC010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.347"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            408..>1026
                     /locus_tag="IBJ56_002908"
     CDS             408..>1026
                     /locus_tag="IBJ56_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3419141.1"
                     /translation="MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLI
                     STIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILET
                     LLLSSFPNLQALAKKVHVSYSGIKKEIKELNEELSERNLSISTGNQVEITGDEFSLRI
                     FYAFLFLVAYSGDRWPFSFVRYDEITDILESCPKEIYRANSIDKAM"
BASE COUNT          369 a          161 c          192 g          304 t
ORIGIN      
        1 aaataaatga ataaaggaac cgaacaaaag cttgccgcgc gtcattcact tctaaatcaa
       61 ttgaaatatt accgtttgtt ccgtattttt cacatgactt ttttggattg ggtagtagtc
      121 cgaaagatgt tattatagat aaagcatatg tgcctgaata gcgcgcaaaa aacaaggtga
      181 agtatcaaaa tcatgaatat ctcactcgaa acgaatggct gaatttattt gaatagaatc
      241 aattaccatt ggtggaagag ctagagggaa ccccggaagt ggactttgaa ctggaaaaga
      301 aacaattagt aacaagagcc aatggagcag atacgatgac ttagagaaac atcttattgc
      361 agttatatgg attttacata aaaagaacat tcaaaggaag tgttttaatg agagaatatt
      421 tagattcaaa aagccaaaaa aaggtagcgc ttcttgagaa gattttttat gcggaaaatc
      481 atacaagtac acaagaggaa ctattaaatg atttgaacat tacgtatcca accctcattt
      541 ctacgattaa aacaattaat tttgatattg aacgatttgg atataaagcg ttttcgattg
      601 ttcactccgc gccaaatttg tcctatacct taaaaatatc ggataattgt agtattcaac
      661 tcattatcaa cgcctatatt agagagtcac ccaaatttca aattctcgaa actttgttgc
      721 tgtcttcctt ccctaatcta caagcattgg caaaaaaagt acatgtttct tattctggga
      781 taaagaaaga aataaaggaa ttgaatgaag agctaagtga acggaacttg tctatttcta
      841 caggaaatca ggtagaaata acgggggatg aattttcatt aagaatattc tatgccttcc
      901 tttttttagt cgcatatagc ggggatcgtt ggcccttttc ttttgttcga tatgatgaaa
      961 tcaccgacat attagagagt tgcccaaaag aaatttatag agcaaactcg atagataagg
     1021 cgatga
//
LOCUS       DABQVC010000346         1018 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.348,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000346 DABQVC010000000
VERSION     DABQVC010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.348"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..527
                     /locus_tag="IBJ56_002909"
     CDS             <1..527
                     /locus_tag="IBJ56_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAM3419142.1"
                     /translation="YRRAEDTIVDTFLHLLRQNSFDSISINELTKKANINRSTFYSHY
                     EDKNHLLKTVIKTSLHNYLEIHTINNFLFGEEFIWSILVQTRDFVESISKEWGKGFLS
                     IIMQIDMYIREYLYDIIYDKLMLSSYAKENPERRYLAVSLSASIFSVIRETHIKQVKL
                     DDMKFNLLPMIYTF"
     gene            complement(739..999)
                     /locus_tag="IBJ56_002910"
     CDS             complement(739..999)
                     /locus_tag="IBJ56_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419143.1"
                     /translation="MEMMLIGKKYYERVNQPIVTKERWEQYLKLIHDSIDNDYSLLFT
                     TYSGGYEHHVSGKCYLFNESLKTILVSGIIVRDTEIISIERL"
BASE COUNT          326 a          179 c          163 g          350 t
ORIGIN      
        1 ggtatagacg tgcagaagat actattgttg atactttttt gcatttgctt cgtcaaaatt
       61 cttttgattc aatttcaatt aatgagctta ccaagaaagc gaatattaat agaagtacat
      121 tctattctca ttacgaagat aaaaatcatc tgttgaagac tgttatcaag acgagcttac
      181 ataattattt ggaaattcac acgattaata acttcttgtt tggcgaagag ttcatttggt
      241 ctattctagt gcaaactcgt gattttgttg aatcgatttc aaaggaatgg ggcaaaggtt
      301 ttttatccat aattatgcaa atagatatgt atatacgaga atatctttat gacattattt
      361 atgacaaatt aatgctaagt tcttacgcga aagaaaatcc tgaacggaga tatctcgcag
      421 ttagtttgag tgctagtatt ttttctgtta ttcgagaaac acacattaaa caggtgaaac
      481 tagatgatat gaaatttaac ctgttgccaa tgatttatac cttttaaaaa aatctcggct
      541 attaagggct ttttttgtat cgctaatgaa gacgggtgag tgatagcagc acttaacacg
      601 ctctcaatgc attctgacga catagcttct cgccatttta acctgcttga ctcttgttgc
      661 tgatccattt gttcattatg ttcgctcaag aaaaatactt gccatttttt atccctcgat
      721 cttgataggt catcaaaatc acaacctttc aatcgagatt atttccgtat ctcgtacaat
      781 aattccggat acaagaatcg tcttcaatga ttcattaaat aaataacatt tgcccgaaac
      841 gtgatgttcg taaccaccac tatacgtggt aaaaaggaga gaataatcat tgtctataga
      901 atcatgtatt aacttcaaat attgctccca gcgttcttta gtgacaatag gttgattgac
      961 tctctcataa tactttttcc caattaacat catttccatg gccaaaacct ccaaaaat
//
LOCUS       DABQVC010000347         1008 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.349,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000347 DABQVC010000000
VERSION     DABQVC010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.349"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..118
                     /locus_tag="IBJ56_002911"
     CDS             <1..118
                     /locus_tag="IBJ56_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="toxin B"
                     /protein_id="HAM3419144.1"
                     /translation="FGVFITKNHEKVKALEESYKELDSQLGQTFNYGMERTK"
     gene            405..680
                     /locus_tag="IBJ56_002912"
     CDS             405..680
                     /locus_tag="IBJ56_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HAM3419145.1"
                     /translation="MKKIKDECYLILSLIEKSNLKETDYYSIVRIKRALTKLLDEINS
                     NDIEKMNINFLSLARNFVDDTGDYSNDILKELENLSKDVEKLKLTRR"
     gene            685..>1008
                     /locus_tag="IBJ56_002913"
     CDS             685..>1008
                     /locus_tag="IBJ56_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SseB family protein"
                     /protein_id="HAM3419146.1"
                     /translation="MNEQILLKNDDLLNIIKVLKTNYSKQVEEELYRQMQKSKLLLPA
                     IIREENKISIVKIIDEKENEYLPVFTDWTNFQLYLDSTKESQPIVFTFNEYFNILVAD
                     LNLSGI"
BASE COUNT          425 a           91 c          187 g          305 t
ORIGIN      
        1 atttggtgtc ttcattacaa agaatcatga aaaagttaag gcgttagagg aaagttataa
       61 agaacttgat agtcagttag gacagacctt taattatgga atggagagaa caaaatgagt
      121 agaaaaatac atctaaaaac tttttaaaag aaagcggaat aaaaacatgg ctgatttaaa
      181 gggagtatag caaatcctca ataaggagca attgtaaagg tttttgatgc agttggagga
      241 aaacaaatcc agtttgacac ctcagtgaga tgatatgaga aattacactt gttaagtggg
      301 ataaaataag tgtctaaatc tctaaaagaa aaaatattat cgagaaaacg atttatttgc
      361 taggattaga agatttaaga tattccttat aaataggagg atatatgaaa aaaataaaag
      421 atgagtgtta cttaatttta agcttaatag aaaaaagtaa tttaaaagag acggattatt
      481 acagtattgt tcgtattaaa agagcactta ctaaattatt agatgaaatt aatagtaatg
      541 atattgaaaa aatgaatatt aattttctga gtttagcaag aaattttgtg gacgacacgg
      601 gagattattc taatgatatt ttaaaagagt tggaaaatct atcaaaggac gttgagaagt
      661 tgaaattaac acggaggtag aaatatgaat gaacaaatat tgttgaagaa cgatgattta
      721 ttaaatataa tcaaagtttt aaaaacgaat tactcaaaac aagtagaaga agagttgtat
      781 aggcaaatgc agaaaagcaa attgttatta ccagctataa taagagaaga gaataagata
      841 tctattgtaa agataataga tgagaaagaa aatgagtatt tgccagtatt tacagactgg
      901 acaaattttc aattgtatct tgatagtaca aaagaatctc aacctattgt ttttacattt
      961 aacgaatatt ttaatatcct tgttgctgat ttgaatttat ctggaatt
//
LOCUS       DABQVC010000348         1000 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.350,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000348 DABQVC010000000
VERSION     DABQVC010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.350"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            8..541
                     /locus_tag="IBJ56_002914"
     CDS             8..541
                     /locus_tag="IBJ56_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HAM3419147.1"
                     /translation="MRKKTLAVFLVFTVLVALLAPTNASAYTKLGYVMTKASAKNFKI
                     YINGSAKGFKNIIISGAKAWNPSPYLNTVSIGNDVKPNFTVSSSGTNKGSVLAVCNTT
                     YYKSNKLISKNEITLYKGFRSLSTNHKIETIVHEFGHGFGLGHVKTKNAIMLDKGFIN
                     KTKPQTDDFNGIKALYK"
     gene            557..>1000
                     /locus_tag="IBJ56_002915"
     CDS             557..>1000
                     /locus_tag="IBJ56_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419148.1"
                     /translation="MKKRITMILGLVCLSTLTACSNSENVKEKTSEEPATAQNGAETI
                     KAHNGVVSYHGKYLKLAENMDTLEKDAPIIIKATKKSEKTTVTKETKENVFPTDFYTM
                     SDVQINSIEKDTTGKLSESMTIKVLEYSVENVLVEGKEYDLTIDGY"
BASE COUNT          391 a          143 c          196 g          270 t
ORIGIN      
        1 aaacatcatg aggaaaaaaa cgttagcagt gtttcttgtt tttacggtgt tagttgcgtt
       61 attagcgcca actaatgcaa gcgcatatac aaaacttgga tatgtgatga caaaggctag
      121 tgcaaaaaat tttaaaattt atattaacgg ttcggcgaaa gggtttaaaa atattattat
      181 aagcggtgcg aaagcttgga atccttctcc ttacttaaat acggttagca taggaaatga
      241 tgtcaagcct aactttacgg ttagtagttc gggtacaaat aaggggagtg ttttggcggt
      301 ctgcaacacc acttactaca aatcaaataa attaatctcc aagaatgaga tcactttgta
      361 taaaggcttt cgttcacttt caacgaatca taaaatagaa actattgtgc atgagtttgg
      421 tcatggcttt ggcttagggc acgtgaaaac taaaaatgca attatgttag acaaaggatt
      481 tataaataaa acaaaacctc aaacagacga ttttaatggc atcaaagctt tatataagta
      541 aaaaggagga atgacaatga agaaaagaat aacaatgatt ctaggtttag tatgtcttag
      601 tacattaact gcttgttcta atagtgaaaa tgtgaaagaa aaaacatcag aagaaccagc
      661 aacagctcaa aacggagcag aaacaataaa ggcgcacaat ggggtggtct cttatcacgg
      721 aaaatacctc aaacttgctg aaaatatgga tacccttgaa aaagatgccc caattatcat
      781 taaagcaacc aaaaaatctg aaaaaacaac tgtaacaaaa gaaacaaaag aaaatgtatt
      841 tccaaccgat ttttatacga tgagcgatgt gcaaataaat tctatcgaga aagatacaac
      901 aggaaaattg agcgagagta tgactattaa agtgttggag tatagcgtag aaaatgtttt
      961 ggtagaaggg aaagaatatg atttaactat tgatggttat
//
LOCUS       DABQVC010000349          986 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.351,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000349 DABQVC010000000
VERSION     DABQVC010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.351"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>986
                     /locus_tag="IBJ56_002916"
     CDS             <1..>986
                     /locus_tag="IBJ56_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HAM3419149.1"
                     /translation="VSKSAVSLALNGKAGVSEETRLHILQIVEENNYVPLRNTNKKMK
                     KKSTIRFIACKSPNLITEQYQNLPFFSELLSYLSAEIASYPYDLVISTFDATTILEEL
                     AEAEKEQPTAGLILLGTNLNAEEINRIQQEYPKIVVLDTHHPHISANFVSINNFLGGY
                     KAADYLLQLAHTKIGYVMGVPRIKNFDERKSGFFARLEEADISVPEQHVFHLPAMQIQ
                     EEVSVKEAIAELQDLPSALFCENDYMAISMIKMLQSLSIKVPEQVSVLGFDNINESKV
                     ITPELTTVHVKKRDIAEQTLALLSKQIKADTNFETRQIQVNTSLIERTSCVP"
BASE COUNT          339 a          196 c          165 g          286 t
ORIGIN      
        1 cgtttcgaaa tcggccgttt cccttgcgct gaatggaaaa gctggcgtaa gtgaagaaac
       61 ccgtttacat attctgcaaa ttgtcgagga aaataattac gtcccgttac gtaataccaa
      121 taaaaaaatg aaaaagaaat caaccattcg ttttatcgca tgcaaaagtc ctaacttgat
      181 taccgaacaa tatcagaact tacctttttt cagtgagcta cttagctatt tatctgctga
      241 aatcgctagt tacccatatg atttggttat ctctaccttc gatgcaacaa ccatattaga
      301 agaacttgct gaagcagaaa aagagcaacc aacagcaggc ctgattttac ttggcactaa
      361 tttaaacgct gaagaaatta accgaataca acaggaatat cctaaaatcg ttgtcttaga
      421 tacacaccat ccacatatct cagccaactt tgtctctatt aataattttc tcggtggata
      481 taaagcagct gactaccttt tacaactagc acatacaaaa attggttatg tgatgggggt
      541 accacgcatt aaaaattttg atgagcggaa aagtggcttt tttgctcgtt tagaagaagc
      601 cgatatttca gtccctgaac aacatgtctt tcatttacca gcaatgcaaa tccaagagga
      661 agtttcggta aaagaagcca ttgctgaatt gcaagattta ccctctgctc ttttttgcga
      721 aaatgattac atggctatta gcatgattaa aatgctacaa agtctatcta tcaaagtccc
      781 tgaacaagtt tccgtattag gttttgacaa tattaatgaa agtaaagtaa ttacaccaga
      841 actaaccact gttcatgtta aaaaacgtga tattgctgaa caaacacttg cccttttgtc
      901 caaacaaatt aaagctgata cgaattttga aaccagacaa atccaagtga atacaagctt
      961 aatcgaaaga actagctgtg ttccgt
//
LOCUS       DABQVC010000350          967 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.352,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000350 DABQVC010000000
VERSION     DABQVC010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.352"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..440
                     /locus_tag="IBJ56_002917"
     CDS             <1..440
                     /locus_tag="IBJ56_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419150.1"
                     /translation="DLYGDKISKVGSRRKKLDTPTKYLSTAYLISDTLKSFNSYGNSK
                     DSSRLAGDLTGIAITKGADFAVGKLATTALSGFGVSGVKGAIAGAIISVAADKIIDPT
                     VEYVKESKVEAKRDDWETKGIYKGWKKIRDLKLEYTVGNYQAS"
     gene            544..879
                     /locus_tag="IBJ56_002918"
     CDS             544..879
                     /locus_tag="IBJ56_002918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419151.1"
                     /translation="MYINLKSSDGNVITTKVGSCWTCVFLSFFGPLLRGDIKFFVLYV
                     ILDGAGLFITLNYDRDIGIAIMAMVTLLFESNYNTWFIRGKMNNGWEPETEKDREILL
                     EKGVIKTEV"
BASE COUNT          356 a          139 c          200 g          272 t
ORIGIN      
        1 ctgatttata tggggataaa atatctaaag tggggtcaag gagaaaaaaa ttggacactc
       61 caaccaaata cctttcaaca gcctacctca tctcagacac gctaaaaagt tttaacagtt
      121 atggaaatag caaagattcc tctcgacttg caggagatct aaccggtata gcaataacaa
      181 aaggtgcgga ttttgctgtt gggaaattag ctactacggc attatctggt tttggtgtaa
      241 gtggtgttaa aggcgctatc gcaggcgcca ttatttccgt tgctgcagat aaaattattg
      301 atccgacggt tgaatatgtt aaagagagca aggtagaagc aaagagggat gactgggaaa
      361 caaaaggtat atataaaggc tggaaaaaaa ttcgagattt aaaactagaa tatacagtgg
      421 gtaactatca agcaagttaa cagttaaaaa tataagattt tttacctaat aaaaatgaca
      481 gcagtatcta tatgagacta ctaacaactt caccatgtgc gttacaaata aaaggaggaa
      541 aaaatgtata ttaatttaaa atccagtgat ggaaatgtga ttacaacaaa agttggttct
      601 tgctggacct gtgtatttct ttcgttcttt ggtcctttac tccgaggaga tattaaattc
      661 ttcgttcttt atgtaatatt agatggagcg gggcttttca tcactttgaa ttatgataga
      721 gatatcggaa tagctatcat ggctatggta actttactct ttgaatccaa ttataataca
      781 tggtttatcc gcgggaagat gaacaacggg tgggaaccag aaacagagaa agatcgagaa
      841 atattgttag aaaaaggcgt cattaaaaca gaggtatagt atataaatcc aattcgaaag
      901 ggactcaata aaatgaattc taatgaaatt tcagagatta taattcagca aaataaaggg
      961 aaaacaa
//
LOCUS       DABQVC010000351          954 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.353,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000351 DABQVC010000000
VERSION     DABQVC010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.353"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            180..503
                     /locus_tag="IBJ56_002919"
     CDS             180..503
                     /locus_tag="IBJ56_002919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419152.1"
                     /translation="MNYNLKECKKILEEDIYLLGYQELRYAIFEGEKNNRQEYQVRIE
                     KNEDKFEVYMTADRASVVGKYEFNNVFDAMDKFLHIMQSRVLSNRRRVKDGELPEYSC
                     PLWDN"
     gene            543..866
                     /locus_tag="IBJ56_002920"
     CDS             543..866
                     /locus_tag="IBJ56_002920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419153.1"
                     /translation="MIEMTQGLVNILMLFSSFHLCIFEHTLLIWGIFFQSHKGVKIVN
                     NTSIYNKIETEFSIINDANSLISIAVRGINTDGSLCTLNGFTASKKLMELVFMELKHW
                     RIYSS"
BASE COUNT          369 a          102 c          189 g          294 t
ORIGIN      
        1 tttttagata gtgagcagat tcttgatata ttagctctgg atactccttt aggtaaaaac
       61 actacaaaag aatatgaacc attttataaa cgtaaaggct aaaatttatt gaaaaaggaa
      121 cataagtaaa aaagtaacta ctaatcaagt tgccaataga ttacagggag ataaaatgga
      181 tgaattataa tttaaaagaa tgtaaaaaaa ttttagaaga agacatttat ttactaggtt
      241 atcaggaatt aagatacgct atattcgaag gtgagaaaaa taatcgacaa gaatatcaag
      301 ttagaattga aaagaatgaa gataagtttg aagtttatat gacagctgat agagctagtg
      361 tagtggggaa atatgagttt aataatgttt ttgatgctat ggataaattt ttacatatta
      421 tgcagagtag ggttttatcg aatcgtcgaa gagtgaaaga cggggaactg ccagaatact
      481 cctgtccatt atgggataat taagagtaga aaaaatatct taagtggata tggagagtta
      541 tattgataga aatgacccaa ggactggtga atatccttat gttattttcc tcatttcact
      601 tgtgtatttt tgagcatacg ctattgatat ggggaatttt cttccaaagc cataaaggag
      661 taaagatagt gaacaatacc agcatataca ataaaattga aacagagttt tctattataa
      721 atgatgcaaa tagcctaatt tctattgctg ttcgaggaat aaatacggac ggttctctgt
      781 gtacattaaa tggctttacg gcatcaaaaa aattgatgga gctagtcttt atggagttga
      841 aacattggcg gatttatagc tcttgaactt taacttagaa agaagtagtg aacataatga
      901 taaaatcagg agaatatact tgtataaacg ggaaagaata taaagtgatt ttaa
//
LOCUS       DABQVC010000352          950 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.354,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000352 DABQVC010000000
VERSION     DABQVC010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.354"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..92
                     /locus_tag="IBJ56_002921"
     CDS             <1..92
                     /locus_tag="IBJ56_002921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HAM3419154.1"
                     /translation="ILNKVKKNKQVPFVPYIYVSFLLISILIK"
     gene            104..778
                     /locus_tag="IBJ56_002922"
     CDS             104..778
                     /locus_tag="IBJ56_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JAB domain-containing protein"
                     /protein_id="HAM3419155.1"
                     /translation="MLIHEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVL
                     TIANRIIMKFKNVGEMQYASIEEFQLVNGIGIAKASKIMAAIELGRRIGIVTEQEEVV
                     VRCPEDAVKLVMPELAFLFQEHFHCLFLNTKNQVIYRQTIFVGGLNASIVHPREVFRL
                     ALRKSAASIMCFHNHPSGDPTPSSEDLLVTKRLAEAGNIVGITLLDHIIIGKNKYISL
                     KEKGYF"
BASE COUNT          318 a          144 c          185 g          303 t
ORIGIN      
        1 tgatattaaa taaagtgaag aaaaataagc aagttccatt tgttccgtat atatatgttt
       61 cctttctgct gattagtatt ttgataaaat aggagctgtt cttatgttga tacatgaaat
      121 atcagagaat gaaaaaccac gcgaaaagct acagaattat gggatagaag cactttcatc
      181 ttcggaattg gttgctttaa ttattgaaac agggactaaa aatgagtcag ttttgacgat
      241 agctaatcga atcatcatga aattcaaaaa cgtgggcgaa atgcaatatg cttctataga
      301 agaatttcag ttagttaatg gtatcggaat agcaaaagct tctaaaatca tggctgcgat
      361 tgaacttgga agacgtatcg gcatcgtaac ggagcaggaa gaagtggttg ttaggtgtcc
      421 cgaagatgcg gtaaaacttg taatgccaga gcttgctttt ctttttcaag aacatttcca
      481 ttgtctattt ttaaatacca aaaaccaagt aatatatcgg caaacgattt ttgttggtgg
      541 tctgaatgct tccatcgttc atcctagaga agtttttaga ttagcgctca ggaaatcagc
      601 agcatcaatc atgtgctttc acaaccatcc atctggtgat ccgactcctt ctagtgaaga
      661 cttgcttgta acaaaaaggt tagctgaagc tggtaatatt gtcggaatta ccttactaga
      721 tcatattatc attggcaaga ataagtatat tagtttgaaa gaaaaaggtt acttttaaat
      781 caagaatact gttcacaaaa tgtctacaga caacgtttgc taccttatgc taaagtgagt
      841 accaataaaa tgtaaaggtg gcttattgtg caaaataaat ggagagtata taaagataat
      901 attatcgtct tttcaatagt tatcggtatg tttgccattc cagtttttct
//
LOCUS       DABQVC010000353          938 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.355,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000353 DABQVC010000000
VERSION     DABQVC010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.355"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(74..>938)
                     /locus_tag="IBJ56_002923"
     CDS             complement(74..>938)
                     /locus_tag="IBJ56_002923"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HAM3419156.1"
                     /translation="ELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLME
                     LLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITL
                     DMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLK
                     APIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKV
                     YACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRV
                     HENASVSSLFE"
BASE COUNT          281 a          191 c          175 g          291 t
ORIGIN      
        1 tgtcctgcta cttggggaaa attaaattaa atcaaaaaac aggatgtctc aatgaggcat
       61 cctgttttat attttattcg aataaagaac ttacagaagc attttcatga acgcgaacga
      121 ttgcttcgcc aagaagagct gcaacagata attgttccat tttgtcaatc catttttctt
      181 ctggaagagc gatggagttt gtaacaacta atttttcgat tggcgattct tcaatacgtt
      241 tcatagcagg acctgaaaga actgggtgcg aacaacatgc gtaaactttt gttgcgcctg
      301 cttcacgcaa tgctttagca gcaagtgtga ttgttccagc tgtatcaata atatcatcaa
      361 taatgataca aactttccct tctacattac caacgatgtt cattacttca gctacgtttg
      421 gacgcggacg acgcttatca ataatagcaa tcggcgcttt caaacggtca gccattttac
      481 gagctcgagt aactccacca tggtcagggg aaactactac tagatcatca cctaaatgac
      541 gttcactgaa atagtcactt agaaggcgaa ctgcattcaa gtgatcgatt ggaatatcaa
      601 agaaaccttg gatttgcggt gcatgcatat caagtgtaat cattctagtt gcaccagcag
      661 tttcgattaa gtttgctact aatttcgctg tgattggttc acgacttctt gctttacggt
      721 cttgacgtgc gtaaccatag taaggcataa caatattaat tgttgctgcg gaagcgcgtt
      781 tcaacgcatc aatcatgatc aaaagttcca ttaaattctg gtttacagga ttactcgttg
      841 attgaataac atatacatga caaccacgga tactttcttc aatgttaatt tggatttctc
      901 catcactaaa atgagtaacg cttgatttcc ctaactca
//
LOCUS       DABQVC010000354          936 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.356,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000354 DABQVC010000000
VERSION     DABQVC010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.356"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(134..529)
                     /locus_tag="IBJ56_002924"
     CDS             complement(134..529)
                     /locus_tag="IBJ56_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3419157.1"
                     /translation="MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREP
                     DLEMVTQIATLYDVSVDYLLGQQSIPTYAPSELQNEKDIGKRITKISEDLKYEDDLNL
                     DGQPLNESAAAFLADSINFLYEQAKKIND"
     gene            680..895
                     /locus_tag="IBJ56_002925"
     CDS             680..895
                     /locus_tag="IBJ56_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3419158.1"
                     /translation="MKTVDTRRINTTKIRELRLQRGITQAFIARRMGYRYTSGYSNIE
                     KGTVRLSHKNAVILSEILMCDLKFFYE"
BASE COUNT          302 a          163 c          153 g          318 t
ORIGIN      
        1 atttgtaaaa ggccccattt tctgttcgtt ctttttgaag taccattctg acaaatgaaa
       61 ctcccccttt agctttttat tttgactcta ttaattattc ccaaaaacgc taaaagttaa
      121 acgagcaaag gaactaatcg tttattttct tcgcttgttc ataaagaaaa ttaatcgaat
      181 cagctaaaaa agctgctgcg gactcattta gcggttgtcc atctaaattt aaatcatcct
      241 catattttaa atcttcacta attttagtta ttcttttccc aatatctttc tcattttgga
      301 gttcactagg agcataggtt gggatgcttt gttggccaag taaataatcg acactaacat
      361 cataaagtgt tgcaatttga gtcaccattt ctaaatctgg ttcccgaata ccatattccc
      421 aattgccata agtggaaggt gcttttaaac caagccttct agctgtttct gcttttgacc
      481 aaccttgttt ttcccgtaat aaagtaagtc tgttacttaa atttggcata atttcactcc
      541 tttttgtttg attatacaat atcttactca gtttagctac attttaacac ataacgtatt
      601 attttctgat tgacatagtc gtattgtgtt gttagaattg tattaacaac tcaaattgtg
      661 tagataagga gaagatgaca tgaaaacagt agacaccaga agaattaata caacaaaaat
      721 tcgagaatta cggttgcagc gaggaatcac ccaagctttc attgcgcgac ggatgggcta
      781 taggtacaca tcaggataca gtaacattga aaaaggaact gttagactat cacacaaaaa
      841 tgctgttatt cttagtgaaa ttttaatgtg cgatttgaaa ttcttttatg aataactaga
      901 ctagacacgg gggaaagatg taagatgaaa agaata
//
LOCUS       DABQVC010000355          933 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.357,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000355 DABQVC010000000
VERSION     DABQVC010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.357"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..169
                     /locus_tag="IBJ56_002926"
     CDS             <1..169
                     /locus_tag="IBJ56_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HAM3419159.1"
                     /translation="DFELEKQHLLTRANELIQQYPEKKALFEGYLKSQWSEYDDLEEH
                     LIAVTWILHKK"
     gene            191..>933
                     /locus_tag="IBJ56_002927"
     CDS             191..>933
                     /locus_tag="IBJ56_002927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3419160.1"
                     /translation="MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLI
                     STIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILET
                     LLLASFPNLQVLANEVHVSYSGIKKEIKELNEELRERNLSISTGSQVEITGDEFSLRI
                     FYTFLFLVAYSGDRWPFSFVQYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLR
                     DRMNCQIDTTRQFKVALYKACTEESKKSE"
BASE COUNT          331 a          151 c          172 g          279 t
ORIGIN      
        1 ggattttgaa ctggaaaagc aacacttatt aacaagagcc aatgaattaa ttcaacaata
       61 tccagagaaa aaagcccttt ttgaaggata ccttaagagc caatggagcg aatacgatga
      121 cttagaggaa catcttattg ctgttacctg gattttacat aaaaagtaaa cattgaaagg
      181 aagtgtttta atgagagaat atttagattc aaaaagccaa aaaaaggtag cacttcttga
      241 gaagattttt tatgcggaaa atcatacaag tacacaagag gaactattaa atgatttgaa
      301 catcacgtat ccaaccctca tttctacgat taaaacaatt aattttgata ttgaacgctt
      361 tggctataaa gcgttttcga ttgttcactc cgcgcctaat ttgtcctata ccttaaaaat
      421 atcggataat tgtagtattc aacttattat caacgcctat attagagagt cacccaaatt
      481 tcaaattctc gaaactttat tgctggcctc cttccctaac ttacaagtat tggcaaacga
      541 agtacatgtt tcttattctg ggataaagaa agaaataaag gaattgaatg aagagctaag
      601 ggaacggaac ttgtctattt ctacaggaag tcaggtagaa ataacggggg acgaattttc
      661 attaagaata ttctatacct tcctcttttt agtcgcatat agtggggatc gttggccctt
      721 ttcttttgtt caatatgatg aaatcaccga catattagag agttgcccaa aagaaattta
      781 tagagcaaac tcgatagata aggcgatgat gattcattat tatgtcgcta tgcatttatt
      841 aagagatcga atgaattgtc aaattgatac aactaggcag tttaaagtgg ccctatataa
      901 ggcttgcacc gaggagtcta agaaatcaga gag
//
LOCUS       DABQVC010000356          924 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.358,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000356 DABQVC010000000
VERSION     DABQVC010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.358"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>924
                     /locus_tag="IBJ56_002928"
     CDS             <1..>924
                     /locus_tag="IBJ56_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HAM3419161.1"
                     /translation="GINVIAGYDIAKECQYSYEYNNKARFIHKDIKEISDDEISALYP
                     ENTDIRLLMGCAPCQPFSAYSHRYKESETRKQKMDLLDYFGKQVELVQPEIVSMENVP
                     QLRNDPVFEKFITLLKSNNYFVDWKIVYAPEYGVPQKRKRLLLLASKIGEISLLEPTR
                     TKDNYPTVREAISRLKPIKAGETDNEDFLHRARKLSDLNIKRIKSSFPGGTWKDWDEE
                     LLPNCYKRKSGESYKSVYGRLEWDKPSSTITTQFVGYGNGRFGHPEQDRALSLREGAI
                     LQTFPKDYQFVEKIEQASFVKLAVQIGNAVPV"
BASE COUNT          341 a          114 c          193 g          276 t
ORIGIN      
        1 ggggatcaat gttattgcgg gttatgatat tgctaaagaa tgtcagtatt catatgagta
       61 taataataag gcaagattta ttcataaaga tataaaagaa atctccgatg atgaaatatc
      121 agcattatat cctgaaaata cggatataag acttttaatg ggctgtgctc cgtgtcaacc
      181 attttctgca tatagtcata ggtataaaga aagcgaaaca agaaaacaaa aaatggattt
      241 attagattat tttggaaaac aagttgaatt agtacagccg gaaatcgtat caatggaaaa
      301 tgttccacaa cttagaaatg atccggtttt tgaaaaattt attactttat taaaaagtaa
      361 taattatttt gttgattgga aaatcgttta tgctccagaa tatggtgttc ctcaaaaaag
      421 aaaaagactt ttactgttag catctaaaat aggtgagatt agtttattag agccaacaag
      481 aacgaaagat aattatccaa cagtgaggga agcaatttca agattgaagc caattaaggc
      541 aggtgaaacg gataacgagg attttcttca tagggcaaga aaattatctg acttgaatat
      601 aaaaagaatt aagagttctt ttccgggagg aacttggaaa gattgggatg aagagctttt
      661 gcctaactgt tataaacgaa aaagtggtga aagttataaa tcagtatacg gtcgattgga
      721 atgggacaag ccatcgtcaa ctattactac tcaatttgtg ggatatggga atggtagatt
      781 tgggcatcct gaacaagata gggctttgag tttgagagaa ggagcgattc tacagacttt
      841 tcctaaagat tatcagtttg tagaaaaaat tgagcaagca tcttttgtta aactagctgt
      901 tcaaatagga aatgctgtac ctgt
//
LOCUS       DABQVC010000357          913 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.359,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000357 DABQVC010000000
VERSION     DABQVC010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.359"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>913
                     /locus_tag="IBJ56_002929"
     CDS             <1..>913
                     /locus_tag="IBJ56_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAM3419162.1"
                     /translation="CYNEEEVLSESVTQLTNIIEKLVMSESISDKSQIMFVDDGSKDR
                     TWELIQQYSESNEHVSGLKLSRNYGHQGALLAGLTEAHAYSDCVVSIDADLQDDVNAI
                     IEFIEKYHEGYDVVYGVRDKRDTDTYFKRNSALAFYRIMSKLGVNMVPNHADYRLLSK
                     RALTEFLRYKEENMFIRGIVPLLGFKSTKVFYNRNERFAGESKYPLKKMVLFAVDGIT
                     SFSVAPIRLLLVLGSVIFMIGVVMGIYAIVQKIIGAVVPGWTSLIVSLWLIGGIQLIG
                     IGVLGEYIGKIFKQVKERPRFTIEENVF"
BASE COUNT          306 a          119 c          188 g          300 t
ORIGIN      
        1 ttgttataat gaagaagaag ttctgagcga gagtgttaca caactaacaa atattataga
       61 aaaattagtg atgagtgaat caatcagtga caaaagtcaa attatgtttg tagatgatgg
      121 aagtaaagat agaacttggg aacttataca gcaatactca gaatcaaatg aacatgtatc
      181 tggactaaaa ttaagtcgga attatggaca tcaaggagct ttacttgctg gcttaacaga
      241 agcacatgca tattcagatt gtgtcgtgtc tattgatgct gatttacaag atgatgtgaa
      301 tgcgattatt gagtttatag aaaaatatca tgaaggttac gatgtcgttt atggcgtacg
      361 agataaacgt gacactgaca cttacttcaa aagaaattca gcgttagctt tctatagaat
      421 tatgagcaaa ctaggagtta atatggttcc aaatcatgcg gactatcgac tgcttagcaa
      481 gcgtgcatta acagaattct tacgttataa agaagaaaac atgtttattc gaggcattgt
      541 accattatta ggtttcaaat ctacgaaagt attttacaat cgaaatgaga gatttgcagg
      601 agaatcaaaa tatccactta agaaaatggt tttatttgct gtggatggaa ttacatcttt
      661 cagtgttgca cccattcgat tattattagt ccttggatct gttattttta tgataggcgt
      721 agtaatgggg atttatgcca ttgttcaaaa aatcattggt gctgttgtac ctggttggac
      781 atctttaatt gtttccttgt ggttaattgg cggaattcaa ttaattggta ttggtgttct
      841 aggtgaatac attggaaaaa tctttaaaca agtaaaagaa cgacctcgtt ttactattga
      901 agagaatgtt ttt
//
LOCUS       DABQVC010000358          894 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.360,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000358 DABQVC010000000
VERSION     DABQVC010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.360"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            89..394
                     /locus_tag="IBJ56_002930"
     CDS             89..394
                     /locus_tag="IBJ56_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419163.1"
                     /translation="MFSVFFKRLFPSNFSVSEEAFYYKEKAYPYSEYLIECDAKLIRF
                     NGGSRGMPYYRIVIINKDTRAEKLIRVYNAERRYKNANKHMQELMEELRNEINQYQA"
     gene            422..>894
                     /locus_tag="IBJ56_002931"
     CDS             422..>894
                     /locus_tag="IBJ56_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HAM3419164.1"
                     /translation="MKSYPFFKYNMNIKTFFMFIVCFAILSLGLYFFITFESLRIWQF
                     FGIYTFFSAYTIYVLTTYVNGTVSVNSHALFYKKGFSDKKYLFNQYMLECDTRLHGRT
                     TSFLPFYTINILDLETGKETKIKIRNAAIVHRNGRKNFHLEIVNLAEQLKKIQAK"
BASE COUNT          300 a          147 c          142 g          305 t
ORIGIN      
        1 tagctttacc tttattactt ttataataat tggaatgaca cttccggtac catgggaata
       61 ttttgttatt ctttttgtca tagccctcat gttctcagta tttttcaaga ggctttttcc
      121 aagtaacttt tctgttagtg aagaagcttt ttactataaa gaaaaagcat atccttatag
      181 cgaatatctt atcgaatgcg atgctaaatt aattcgcttt aatggaggct ccagagggat
      241 gccttactat cgaattgtta tcataaataa agatacacgc gcagaaaaac taattcgagt
      301 atacaatgca gagcgtagat acaagaacgc aaataagcat atgcaagaac taatggaaga
      361 actgcgtaat gaaatcaatc aatatcaagc ttaactaaaa catcttaggt ggtgcacaaa
      421 aatgaaaagc taccctttct ttaaatataa tatgaatatc aaaacatttt ttatgtttat
      481 tgtttgtttt gcaatactta gccttggact gtattttttt attacctttg agtcactccg
      541 tatttggcaa ttttttggta tatatacctt ttttagcgcg tatactattt acgtactgac
      601 tacttatgtt aatggtactg tttccgttaa tagtcatgcg ctcttttata aaaaagggtt
      661 ttcggataaa aagtatcttt tcaatcaata tatgctggag tgtgacacca gattgcacgg
      721 gcggaccact tcttttcttc ccttttacac aatcaatatt cttgatttag agacaggtaa
      781 agaaacaaaa attaagattc gtaatgcagc tatcgttcac agaaatggca gaaagaactt
      841 ccatttagaa atagtaaatc tcgccgaaca attaaaaaaa atacaagcta aata
//
LOCUS       DABQVC010000359          882 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.361,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000359 DABQVC010000000
VERSION     DABQVC010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.361"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            94..744
                     /locus_tag="IBJ56_002932"
     CDS             94..744
                     /locus_tag="IBJ56_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419165.1"
                     /translation="MNNRNWLKGLGVTMIAATLILTGCGNGDAEKTDTKEQTKSVEEE
                     GKKVKIESNEGKPQHEQLITVKLPPEADYLNDETLEVYEQDKKKYDQTKQLITNDSIT
                     LLIGDYGYYDPVQDAIECSAVIVNGTKTEIKDLSFQVSIENNVMQGRVFLDNSVPELT
                     KEQTGNFKPSMAIPVILGFPEEKPTDEIENGRKIDTKNIKINLSDIQYKVVEQEGK"
     gene            744..>882
                     /locus_tag="IBJ56_002933"
     CDS             744..>882
                     /locus_tag="IBJ56_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin B"
                     /protein_id="HAM3419166.1"
                     /translation="MGEEIKIDPHFLKKVENNVNSYIKAQKEVSIALLAVRNNLASNF
                     SG"
BASE COUNT          372 a          100 c          189 g          221 t
ORIGIN      
        1 agagtagtga gattttctaa agtattgaag ggaagcacga attaacagta tcaaaattaa
       61 tagaataaga cataaaaaat aagaggttac aacatgaata atagaaattg gttaaaagga
      121 ttaggagtaa caatgattgc cgccacttta attttaacgg gatgcggaaa tggagacgct
      181 gaaaagacag atacaaagga acagactaaa agtgttgaag aagaaggaaa aaaagtaaag
      241 attgagagta atgaagggaa accacagcat gaacagctta taacagtgaa gttgccgcca
      301 gaagcagatt atttaaatga tgaaacgtta gaagtgtatg agcaagataa aaagaagtat
      361 gaccagacaa agcaactaat tactaatgat tcaatcacat tactaatcgg agactatgga
      421 tattatgatc ctgtgcagga tgctatagaa tgttctgctg taatcgtaaa tggtacaaaa
      481 acagaaatta aagatcttag ttttcaagtt agtattgaga acaatgtaat gcaaggtagg
      541 gtatttttgg acaattcagt accggaactt acaaaagaac aaacaggaaa ttttaagcct
      601 agtatggcta taccggtaat tttagggttt ccagaagaaa aaccgacaga tgaaatcgaa
      661 aatggtagaa aaatcgacac taaaaacata aaaattaatt taagtgatat tcaatataag
      721 gttgtagaac aggaggggaa atgatgggag aggaaattaa aatagatcct cattttttga
      781 aaaaggtgga gaataatgta aatagttaca ttaaggctca aaaagaagtt tctattgcat
      841 tactagcagt tagaaacaac ttagcgagta atttttcagg tg
//
LOCUS       DABQVC010000360          880 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.362,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000360 DABQVC010000000
VERSION     DABQVC010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.362"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..511
                     /locus_tag="IBJ56_002934"
     CDS             <1..511
                     /locus_tag="IBJ56_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase SNF2"
                     /protein_id="HAM3419167.1"
                     /translation="KQYYEIKEDYLRKAAAYTININFLEMSQVMQHCYCLSSEKFTIT
                     ESLIAGKEETTIIFCKYRRSEEALQQAFPNVKITTFAKSSYGLNLQFYNQIIYFDKTF
                     DYSQRDQSERRIYRTGQTQDCYYHDLSGNVGLDSLIDTNISKKTSLLQEFKKELSQKN
                     SFEVIMDAF"
     gene            501..>880
                     /locus_tag="IBJ56_002935"
     CDS             501..>880
                     /locus_tag="IBJ56_002935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase family
                     protein"
                     /protein_id="HAM3419168.1"
                     /translation="MLSRTVFDASQERMEAIFSEFDNIIVSFSGGKDSAVMLHLMIDY
                     MRKNNIRKKIYVYHLDYEGQYSATTDFVTEMLTTNLDIIEPLWCCLPIAAQSAVSMFT
                     DHWKPWEKTKQNIWVRDMPTFPHV"
BASE COUNT          306 a          153 c          149 g          272 t
ORIGIN      
        1 aaagcaatat tatgaaataa aagaagacta tctccgaaaa gctgccgcat atacaatcaa
       61 cattaatttt ttagaaatgt ctcaagtaat gcaacattgt tactgtcttt cttctgaaaa
      121 atttactatt acagaatcat taattgccgg aaaagaagaa acaacgatta ttttttgcaa
      181 atacagacgt tcagaagagg cattgcagca agcatttcca aatgtaaaaa ttactacttt
      241 tgccaaatct tcttacggac tcaatttgca attttataat caaattattt attttgataa
      301 aacgtttgat tattctcagc gtgatcaatc agaaaggcgg atttacagaa ctgggcaaac
      361 acaagactgc tactatcatg atttaagcgg taatgtcggt ctggattctc ttattgatac
      421 aaatatttct aagaaaacaa gcttattgca agaatttaaa aaagaactct cacaaaaaaa
      481 ttcttttgag gtgataatgg atgctttcta gaacagtctt tgatgcttcc caagaaagaa
      541 tggaagcgat tttttctgaa ttcgataata ttattgtgtc gttttcgggt ggtaaagata
      601 gcgcagtaat gctccatctc atgattgact acatgcggaa aaataatatt cgcaagaaaa
      661 tatatgtata tcatttagat tatgaaggtc aatacagcgc tacaactgat tttgttactg
      721 aaatgcttac aactaattta gatatcatcg aaccactttg gtgttgtctt cccatcgcgg
      781 cacaatcagc tgtttcgatg ttcaccgacc actggaaacc gtgggaaaag accaagcaaa
      841 acatctgggt tagagatatg cccacctttc cacacgtgat
//
LOCUS       DABQVC010000361          857 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.363,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000361 DABQVC010000000
VERSION     DABQVC010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.363"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            238..522
                     /locus_tag="IBJ56_002936"
     CDS             238..522
                     /locus_tag="IBJ56_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAM3419169.1"
                     /translation="MPKKLYNEKFKKSLVYLYHQGTPKYTLCNDFGVSIASLTRWIKF
                     YNTENIDLNEATNILQMYELKKQKSVLEAEISALSEAITIFNMETSSVEN"
     gene            714..>857
                     /locus_tag="IBJ56_002937"
     CDS             714..>857
                     /locus_tag="IBJ56_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3419170.1"
                     /translation="MVAYGELIREVRLSKGLTQKEVYTGVISKSYAIGFEKGKHDITL
                     VLFE"
BASE COUNT          344 a          109 c          150 g          254 t
ORIGIN      
        1 aaaagaattt gctaagcgat tcaaaagaaa aattattata taaaatgaaa aaaagaaaga
       61 gttactaagt tatatcggaa tcacgggatg tattaaaagt aatctgcacc ttgaaaatgg
      121 cggaatagtc catttgctgg aaaataaagc cagcagtgaa ctttgaaatc aaacagtatt
      181 taacagttat ctgagacatt actaaactct gaaaaacgca caggaaagga actgttcatg
      241 cctaaaaaat tatataatga aaaattcaaa aaaagtctag tctatttgta tcaccaagga
      301 acaccaaagt atacgctatg taatgatttt ggtgtctcaa tagcatctct tacaagatgg
      361 attaaatttt ataacacaga aaatatagat ttaaacgaag ctaccaatat tttacaaatg
      421 tatgaattaa aaaaacaaaa atcggtacta gaggcagaaa tttctgcttt atcagaagct
      481 atcacgattt ttaacatgga gacgagtagt gtcgaaaatt aagtgaaatc cactcatata
      541 ttactatggg tggatttttt tatgtggtaa tacccgtaag tgacattttt gtaagtttca
      601 tttttagagt aaaagcgtta aactactaaa gcgaatattg gggattacaa gattaatatt
      661 gtacatacaa gataacctta ttttctgaaa ctgatatata ggagacgata tcaatggttg
      721 cgtatggtga gttaattcgc gaagtacgac tttcaaaagg attgacgcaa aaagaagttt
      781 atacaggggt aatttcaaaa tcatatgcaa taggttttga aaaaggaaaa catgatatta
      841 cattagtact atttgaa
//
LOCUS       DABQVC010000362          849 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.364,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000362 DABQVC010000000
VERSION     DABQVC010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.364"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(200..544)
                     /locus_tag="IBJ56_002938"
     CDS             complement(200..544)
                     /locus_tag="IBJ56_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419171.1"
                     /translation="MQLSKAEVLASKVSDEIEERLGDKISSSFSIYKTQDEPWIEFSI
                     EFSAYNFFNIILNYDRGSFGCSIVNGGLGIAQTNTQKWYDKADMDIFCKELQEQLELR
                     IPDKFLVYNGWK"
BASE COUNT          263 a          164 c           86 g          336 t
ORIGIN      
        1 tcgtatttta attcattgca ggctaaaaca aagataatat cttgatttac gataccttct
       61 aatcgttctc ttacctctat actattcgtg gacttattgt ctgttataaa atagcctgta
      121 cttaaaaaat tcgttaagga ttctatcata agtataaata ccacctacat tgtagctttc
      181 atcaaattaa caagtctatt tatttccaac cgttgtacac taaaaattta tctggaattc
      241 ttaattcaag ctgttcctgt agttctttgc aaaaaatatc catgtctgct ttgtcatacc
      301 atttttgggt attagtttga gcaataccta accccccatt tacaatacta catccaaagg
      361 aaccgcgatc ataattcaat atgatattaa aaaaattata tgccgaaaat tctatactaa
      421 actctatcca tggctcatct tgtgttttat aaattgaaaa agaagaacta attttatcac
      481 ccaatctttc ttctatttca tcactaactt ttgaagctaa tacttctgct ttacttaatt
      541 gcatataaca cagctccttt tttaaatctc tttaattata tttaccaatc ttgatttctc
      601 tttttcttta ctaattcagt aatactctct aaatccttat atgtaaatgt attgtccact
      661 ctcactatgc tacttatctt gttgttattt taaaaacttc tgtatttttt agttgattta
      721 caagtttctc aaattctaat attactggac tgttataaga accaccatta tctacaaact
      781 gtctgcccag actattcaaa tctatttttt ctgtgattag gcagtttccc tcagcagatt
      841 taagtatct
//
LOCUS       DABQVC010000363          849 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.365,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000363 DABQVC010000000
VERSION     DABQVC010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.365"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..>849)
                     /locus_tag="IBJ56_002939"
     CDS             complement(<1..>849)
                     /locus_tag="IBJ56_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419172.1"
                     /translation="SDISSFWTMIDKNFETLDEEQVRSIISIFQKQSLSVYWKEIFKV
                     FEKLKESEPIGQDDINKMRRNLSQEQEIIETAFSSDADLMGYWLIEQLQKETSNRSSI
                     FYDDEILSINLKSEMIPLIVKLMTDETRYIYWSFKEIISDELIRIIYVSLLNDKMLLD
                     NKSILDNCPDLLLESHPFQRILVSIDNEVGLNDSIKNKLITKIDFSNTTFGSELNLFS
                     RKHKDEIEELGIEISRDYQDMIFGVESGFVHQKSFIDINQILSEDMDAILEILLPKQD
                     ELSSKR"
BASE COUNT          295 a          149 c           89 g          316 t
ORIGIN      
        1 tctctttttg aactaagctc atcttgtttg ggtaataaaa tttccaaaat agcatccata
       61 tcttcactaa gaatctgatt aatatcaata aatgatttct gatgtacaaa accagactca
      121 actccaaaaa tcatatcttg ataatctctt gaaatttcta tccctaattc ttcaatctca
      181 tctttgtgtt ttcttgaaaa aaggtttagc tcgcttccaa aggtagtatt ggaaaaatca
      241 attttagtta tcaacttatt tttaatagaa tcattcaatc caacctcatt atcaatactt
      301 actaaaattc tttggaaagg atgagattct agtaataagt caggacaatt atctaatatt
      361 gacttattat ccaacaacat tttgtcattc agaagagata catatataat tcttatcagc
      421 tcatcagaga taatttcttt aaaagaccaa taaatatatc tagtttcatc cgtcattagt
      481 ttaacaatta atggaatcat ttcagatttc aaattaattg aaagtatctc atcatcataa
      541 aaaatactac tacgatttga agtttccttt tgaagttgtt caattaacca ataacccatt
      601 aaatcagcat cactagagaa agctgtttca ataatttctt gctcttggga aagatttctt
      661 ctcattttat ttatatcatc ttgtccgata ggttctgatt cttttaattt ctcaaaaact
      721 ttaaagattt ccttccaata aacgctcaag ctctgctttt ggaaaatgct aataatcgat
      781 cgaacttgtt cttcatctaa agtttcaaaa tttttatcaa tcattgtcca aaaactacta
      841 atatcacta
//
LOCUS       DABQVC010000364          826 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.366,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000364 DABQVC010000000
VERSION     DABQVC010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.366"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            125..766
                     /locus_tag="IBJ56_002940"
     CDS             125..766
                     /locus_tag="IBJ56_002940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HAM3419173.1"
                     /translation="MNITIFGANGGIGKFVTKLAIDKGHNVTAVLRPNSKMIEKMRMD
                     VIYAELHQQDQINKAIENADVIINAIGPSLDMSRKLKGTPIADGLQNIISAMNKQNRK
                     RLIIIGTPTLTSKEDKNHITTILPKVMAKILYPNAYREMKKMEKIIYVSNIDWTVVRF
                     INPNLKTNGNGYDYVFGDKNGKLSISRYNIANFIVEESMQDKFIKRMPIVFNK"
BASE COUNT          334 a          117 c          144 g          231 t
ORIGIN      
        1 cttcatttta tcactcctat ccaacaaaac gaatatattg ttggttgttt tcaccatact
       61 aatttcatat acttatacta tacaacattt gttggatagt ataaagtgaa agagaggcag
      121 aaaaatgaat attacaatct ttggagcaaa cggtggcata ggtaagtttg tcacaaaact
      181 cgctatagat aaagggcata atgttacagc tgttctaaga ccaaactcaa aaatgataga
      241 gaaaatgagg atggatgtta tatacgctga gctacatcaa caggatcaaa taaataaagc
      301 tattgaaaat gctgatgtta tcattaacgc cataggacca agcttggata tgagtcgtaa
      361 attaaaggga actccaattg cagatggttt acaaaatata atttcagcaa tgaataaaca
      421 gaaccgaaaa cgattgatta taattggaac accaactcta actagtaaag aagataaaaa
      481 tcatattact acaatattgc caaaagtgat ggcaaaaata ctttatccca atgcatatag
      541 agaaatgaaa aaaatggaga aaattattta tgtgtccaac atcgattgga cagtagttcg
      601 cttcattaac cctaatctaa aaactaatgg taacggatat gactacgttt ttggagataa
      661 gaatggaaag ttaagcatat ctcgctataa catcgcgaat tttattgtag aggaaagcat
      721 gcaagataaa tttatcaaga gaatgcctat cgtttttaat aagtaaatct gaaatagttg
      781 gaggtcataa aggataaaaa atgacaagaa acgttgtaat aacata
//
LOCUS       DABQVC010000365          821 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.367,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000365 DABQVC010000000
VERSION     DABQVC010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.367"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(313..717)
                     /locus_tag="IBJ56_002941"
     CDS             complement(313..717)
                     /locus_tag="IBJ56_002941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAM3419174.1"
                     /translation="MSFAVPYLVFNGEGQDALTFYADVFQAEITSVQRFKEMNNFDGN
                     AVFGERLMHSRLAKNGEEFIYITDAPYDGFTIGNRVTILINFETEEDIKYAYEVLSAT
                     GKVEMELQVAFWGSTYAQVTDQFGVFWQLNFG"
BASE COUNT          292 a          175 c          120 g          234 t
ORIGIN      
        1 attgaaacaa gatgaatatg ataaattgtt catagatact gaaattgaat ttcgatatga
       61 agcttttaaa gatgagaaag aaaaggaaga attttttcat gagttcatag aagttcaaaa
      121 gcatttgaaa gaaacattag gtaaggaata caatatcgtt aataagattt tagtttagta
      181 gctgagagtg ctcaatattt agaggtaatc aagacccaca gcatatttat agcctccata
      241 gttattttct tgttctaaaa aaccaaaaac cagttaccca ccaaactcct ggcgtaactg
      301 gttttctaaa tctcacccaa aattaagctg ccaaaacacc ccaaactggt ccgtcacctg
      361 cgcataggtc gaaccccaga acgccacttg caactccatt tccactttgc ccgtagcact
      421 caaaacttca taggcgtact taatatcctc ctctgtttca aagttaatca agattgtcac
      481 ccgattgcca attgtaaaac catcataagg cgcatcggta atataaataa attcttcccc
      541 attttttgct aaacgactat gcatcaatcg ctcaccaaaa acggcattgc catcaaaatt
      601 gttcatctct ttaaaacgct gaacgcttgt aatctcagcc tgaaacacat ccgcataaaa
      661 tgttagcgca tcttgacctt ctccgttaaa aactaagtat ggaactgcaa aagacatctc
      721 atcatctcct atacaattaa tagctttagt ataagcctaa tctactgcga agtcatgtct
      781 caaaataata aggatttgtg aataaaaaca aaatacttgc a
//
LOCUS       DABQVC010000366          799 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.368,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000366 DABQVC010000000
VERSION     DABQVC010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.368"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..709
                     /locus_tag="IBJ56_002942"
     CDS             <1..709
                     /locus_tag="IBJ56_002942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HAM3419175.1"
                     /translation="NPAPYSAYFKNNSLAILSTSPECFLKKRKNKLKTEPIKGTRPRG
                     INKIEEQKNYESLLNSEKERSENTMIVDLLRNDIGKIAKPGTVHVEDLMFIEKYASVL
                     QLVSKISAEVNEEITFGKIIYETFPGGSITGCPKKRAMEVIVESETVKRSLYTGALGR
                     VSFGSMDFDLNILIRTIFLDKNNASLSLGGGIVFDSVETKEYQETLDKGEAILAGLSN
                     RSTIFKEKRYDSNNRSQ"
BASE COUNT          313 a           97 c          152 g          237 t
ORIGIN      
        1 aaatccggcg ccttattcag catattttaa aaataatagc ttggcaattt tatcaacaag
       61 tccggaatgc tttttaaaaa agaggaaaaa taaattgaaa actgaaccaa taaaaggtac
      121 ccgcccacga ggtattaata aaatagaaga acaaaaaaat tacgaaagtc ttctgaattc
      181 agaaaaagaa cgatcagaaa atacgatgat tgttgattta cttagaaatg atattggcaa
      241 aattgcgaaa ccaggaactg ttcatgtaga agacttaatg tttattgaaa aatatgcatc
      301 agtattacag ttagtttcta aaatttcggc tgaagtaaat gaggaaatta cttttggcaa
      361 aataatatat gaaacttttc ctgggggctc aataacgggt tgtccgaaaa agagagcaat
      421 ggaagtaatt gtagaaagtg aaactgtaaa aagatcattg tatacaggag cattaggtag
      481 agtttctttt ggaagtatgg attttgattt aaatatattg ataagaacaa tctttcttga
      541 taaaaacaat gctagtttat cacttggtgg tggaatagtc tttgattcag tagaaacaaa
      601 agagtaccaa gaaacgcttg ataaggggga ggctatactc gctggattga gtaacaggtc
      661 tactatattt aaggagaaaa gatatgattc taataataga tcacaatgat tcattcacat
      721 ataatttgat gcaatatgta cttgaattga cttccaaagt taaagtaata aattatgaca
      781 aactttcgat tagtgatgt
//
LOCUS       DABQVC010000367          776 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.369,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000367 DABQVC010000000
VERSION     DABQVC010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.369"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(91..336)
                     /locus_tag="IBJ56_002943"
     CDS             complement(91..336)
                     /locus_tag="IBJ56_002943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HAM3419176.1"
                     /translation="MKTGIHPEYRPVVFVDTSTDFKFLSGSTKSSSETIKWEDGNEYP
                     LLRVEISSDSHPFYTGKQKHATADGRVDRFNKKYGLK"
     gene            complement(438..>776)
                     /gene="gtcA"
                     /locus_tag="IBJ56_002944"
     CDS             complement(438..>776)
                     /gene="gtcA"
                     /locus_tag="IBJ56_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall teichoic acid glycosylation protein
                     GtcA"
                     /protein_id="HAM3419177.1"
                     /translation="INIVTFWLCTYILNWDYRIANTIAFIASVLFAYFSNKKFVFDSY
                     TPTWKDRLREASSFFGFRCLTYIIDILVMILLISYLSVDELWAKIWTNIIVLVLNYVF
                     SKWIIFKVQK"
BASE COUNT          269 a          142 c          126 g          239 t
ORIGIN      
        1 tatttttagt agttctgaga aataattcca taaaaaaaca cacccagcaa aagctgagtg
       61 cgcaaattat ttcgttcgtt acatacagtc ttatttgaga ccgtattttt tgttgaagcg
      121 gtccacacgg ccgtctgcag tcgcatgttt ttgtttacca gtatagaacg ggtgcgaatc
      181 agaagagatt tcgacacgta gtaatggata ctcgttgcca tcttcccatt taattgtttc
      241 gcttgagctc ttagtagaac ctgacaaaaa tttgaaatca gtactagtat caacaaatac
      301 cactggacgg tactcaggat gaattccagt tttcatttct tttcaactcc ttcgccctga
      361 atcatctgaa acagagtaat taagtgcttt tacacacagt atagatatta taacaatgtt
      421 gaagcaaaca agcaagatta tttttgcact ttaaagatta tccatttgct aaacacgtag
      481 ttcagtacaa gcacaataat attggtccag attttcgccc ataattcgtc tacagataaa
      541 taactgatta acagaatcat gactaaaata tctattatat aggttaaaca acgaaaacca
      601 aaaaatgaac tcgcttcacg gaggcggtct ttccaagttg gtgtataact atcaaaaaca
      661 aattttttat tcgaaaagta ggcaaaaagt actgatgcga taaaagcaat ggtatttgca
      721 atacgataat cccagttcaa aatatatgta catagccaaa atgttactat attaat
//
LOCUS       DABQVC010000368          773 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.370,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000368 DABQVC010000000
VERSION     DABQVC010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.370"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            60..416
                     /locus_tag="IBJ56_002945"
     CDS             60..416
                     /locus_tag="IBJ56_002945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419178.1"
                     /translation="MTTVIIILLIAAIALFVISFLQKGDNKQLEKELEDVAAQWMQEN
                     FELKQRISELEKAMKMDSPSIEAEQVPDSPKVRELMKKQVITLYTSGIVTSEIAEQSS
                     LPKEEVEKIIEEYLKH"
     gene            444..>773
                     /locus_tag="IBJ56_002946"
     CDS             444..>773
                     /locus_tag="IBJ56_002946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419179.1"
                     /translation="MKKNLRMLALGFLISAVVLLVYNQFFSTQTKADETKAASTKAGS
                     DENSSTWKNKYEKLLAQQEVDKATEAEAKKKAEEDAKKKAEEAKKVKSYTLKISKGDP
                     SSKAGDEL"
BASE COUNT          306 a          116 c          152 g          199 t
ORIGIN      
        1 aggtaaatta tgctataact agtagtagag tttatggaag agaggtgtgt ataaaaccca
       61 tgaccacagt cataattatc ttactaattg ctgctattgc gctgtttgtt atttcatttc
      121 tacaaaaggg tgacaataaa caattagaaa aagaactgga agatgttgct gctcagtgga
      181 tgcaagaaaa ctttgaacta aaacaacgta tctctgaact agaaaaagca atgaaaatgg
      241 atagcccaag cattgaagct gagcaagttc ctgatagccc gaaagttcgt gaattaatga
      301 aaaaacaagt gattacactt tatacttctg gaatcgtaac ttcagaaatt gctgaacagt
      361 catctttacc taaagaagaa gtggaaaaaa tcattgaaga atatttaaaa cattgattta
      421 aattttaaag gaggagccta tctgtgaaga aaaacttacg gatgttggcg ctaggtttct
      481 taatatctgc tgttgtctta ctggtgtata accagttttt ctccacacag accaaagcag
      541 atgaaacaaa agccgcatca acaaaagctg gttctgatga aaattcaagc acatggaaaa
      601 ataaatacga aaaattatta gctcagcaag aagtggacaa agcaacggaa gctgaagcaa
      661 agaaaaaggc tgaagaagat gctaaaaaga aagcagaaga agcaaaaaaa gtaaaaagtt
      721 atactttaaa gatttctaaa ggagatcctt cttctaaagc tggtgacgaa ctt
//
LOCUS       DABQVC010000369          772 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.371,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000369 DABQVC010000000
VERSION     DABQVC010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.371"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(47..>772)
                     /locus_tag="IBJ56_002947"
     CDS             complement(47..>772)
                     /locus_tag="IBJ56_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rgg family transcriptional regulator"
                     /protein_id="HAM3419180.1"
                     /translation="LSSDEFFFMNRGYSLAEEDNFWYKFANAANQKSLADLQELYQEV
                     LQQTGDRANLRKAIVHSRMEINEQFLLNNRFDVSIVSEKDKAVIQTYLWKVQSWTLEE
                     IRIFANSVDYFEEDVQIYFFQLVLKSLEKYKHYDRGKKVFSTLLSNIIEELITRNQLE
                     YAAQLLEILHELSSTHDCAFYRIMHNYYQGLIWMKNDQVEQGLKESKSAIRILDVLDY
                     KSLAQLYNTLLQQFLEKENIQIV"
BASE COUNT          241 a          135 c          118 g          278 t
ORIGIN      
        1 atataagacc aaaaaaagat accctattac gggtacctgc tttactttaa actatttgga
       61 tattctcttt ttctaaaaac tgttgaagta atgtattata aagttgtgca agggatttgt
      121 aatccagtac atctaaaatt cgaatggcac ttttagactc ttttaagcct tgttcgacct
      181 ggtcattttt catccagatt aagccttgat agtaattatg cataatccgg taaaaagcac
      241 agtcatgcgt agaagacagt tcgtgcagta tttctaataa ttgcgcggca tattctaatt
      301 gattacgggt aattagttct tcaattatat tggatagaag cgtggaaaat acttttttgc
      361 cacgatcgta atgtttatat ttttcgagtg acttcaagac caattgaaaa aaataaattt
      421 gtacatcttc ttcaaaatag tccactgaat tagcgaaaat ccgaatttct tctagtgtcc
      481 atgattggac tttccacaaa tacgtttgga taactgcttt atctttctca gaaacaatac
      541 taacgtcaaa tcgattattt aatagaaatt gttcattaat ttccattctt gagtggacaa
      601 ttgcttttct tagattggct ctatctcctg tttgctgcaa cacttcttgg tataattctt
      661 gtaagtctgc caaacttttt tgattagctg catttgcaaa tttgtaccaa aaattgtctt
      721 cctccgctaa agaataacct ctattcataa agaaaaattc atccgaactt ag
//
LOCUS       DABQVC010000370          769 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.372,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000370 DABQVC010000000
VERSION     DABQVC010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.372"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(218..568)
                     /locus_tag="IBJ56_002948"
     CDS             complement(218..568)
                     /locus_tag="IBJ56_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419181.1"
                     /translation="MYNASPSVGHLGMKSTIDRKKRSDLTFPLKPKRFLNIFKSEPMR
                     EKPGIMEYNKFIIVTKGVDIKTLLSGVSDLNRRENIEYFLVQNTIMTYQILEGEVINF
                     YAKDLGFLVDELAL"
BASE COUNT          244 a          144 c          100 g          281 t
ORIGIN      
        1 ggtttttata tgaactttgt ttatatacac atcctgaaga tacgaaacta gacattcaca
       61 ctcctcctat aaactttctt ttccttcatt ctgaatttca cagttctggt actcttgcta
      121 ggataagccc cagtaggtct tctaactctg aaattttata tataaatgac tttgacttat
      181 attaatttgg caattatttg cctcacatcg tctactgcta taaagctaat tcatcaacta
      241 aaaatcccaa gtcttttgca tagaaattga ttacttcgcc ttctagaatc tggtaagtca
      301 tgattgtatt ttgcactaaa aaatattcaa tgttttcgcg tctattaaga tctgacaccc
      361 cgctaagtaa tgtctttata tctactcctt tagttacaat tataaatttg ttatattcca
      421 ttattccagg tttttccctc atcggttctg acttaaaaat gtttagaaaa cgcttaggct
      481 ttaatgggaa tgttagatca cttcgcttct ttctatctat agtggatttc atccctaaat
      541 gcccaaccga gggactagca ttatacaata aattataagg gctagcagga aaataatgat
      601 agctatactg ttaaggacgg ttttattgtt tttcttacgt ctcgtttcat agccaataat
      661 taatataagt agaaaaacaa aatatattat tatcacaaat aacatattat ccctcgatcc
      721 ttcttaaaag tagataatta ttcccgtaac cgcaaataaa gttaacaat
//
LOCUS       DABQVC010000371          764 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.373,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000371 DABQVC010000000
VERSION     DABQVC010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.373"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            12..>764
                     /gene="recO"
                     /locus_tag="IBJ56_002949"
     CDS             12..>764
                     /gene="recO"
                     /locus_tag="IBJ56_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HAM3419182.1"
                     /translation="MEKCEGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSR
                     LAAVTQLFTNGYFTFFGSNGLGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATE
                     ERQPNPYLYELTFQILRDINEGYDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGH
                     FDFSTSSNGIICHRCFEKDRYRMHLPENVVKLLRLFFIFQLDRLGNIDVKPETKEWLQ
                     KAIDTYYDEYSGLYLKSRKFLREMDKWENMLKK"
BASE COUNT          256 a          119 c          161 g          228 t
ORIGIN      
        1 aggcttacca catggagaaa tgcgaaggaa tcgtgatacg gcaaacgagt taccgtgaat
       61 cagataaaat tgtccgaatg tatacacgtg aatttgggaa gattggtgtg gtggctcgtg
      121 gggcaaaaaa aacgaaaagc agattagctg cagtaactca attatttacg aatggttatt
      181 ttactttctt tggtagcaat ggccttggta cgcttcagca aggggaagtc atagaaaatt
      241 tttcttctat tcagcaagat atttttatga ctgcttatgc gacttatgtt tgcgaattgc
      301 ttgataaagc cactgaagaa cgccaaccga atccatatct atatgaatta acttttcaaa
      361 ttttgcgaga tataaatgaa ggatatgatc cgcaaattct cactcaaatt tttgaaatga
      421 aaatgttacc ggtgcttggt ctttacccaa caatggataa gtgcgccatt tgtggtgaaa
      481 caacaggtca ttttgatttt tcaacaagta gtaatggcat tatctgtcat cgttgctttg
      541 agaaagaccg ttacagaatg catttgccag aaaatgtcgt aaaattgctg cgtttgtttt
      601 tcatcttcca attagataga ctaggaaaca tcgatgtgaa gccagaaacg aaagaatggc
      661 ttcaaaaagc aattgataca tactacgatg aatactctgg tttgtattta aaaagcagga
      721 aatttttgcg cgaaatggac aaatgggaaa atatgttaaa aaaa
//
LOCUS       DABQVC010000372          753 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.374,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000372 DABQVC010000000
VERSION     DABQVC010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.374"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..392
                     /locus_tag="IBJ56_002950"
     CDS             <1..392
                     /locus_tag="IBJ56_002950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419183.1"
                     /translation="AKGLSLGLAQWNDRGKVDISAKVWRHTGDKWSRQSEELPLHRVL
                     DLAILIARTKVHFKDAYRLPHFYDKENPTLDRIGLQGDALTIAVCEDNEYIDEDMQLF
                     EQVLKNDDELLSERLKTLSKLLQEAGY"
     gene            406..744
                     /locus_tag="IBJ56_002951"
     CDS             406..744
                     /locus_tag="IBJ56_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HAM3419184.1"
                     /translation="MNKDNRKELIRAYKEKSPDAGVYRFISTKSGKSLIDNTMDLKGI
                     ANKLAFGVKIGAGNMLPPEMAKEAKEYGIDTIQFEILEKVDIKPEMTKEDIKEENDVL
                     LSLWLEREDI"
BASE COUNT          271 a          130 c          155 g          197 t
ORIGIN      
        1 atgcgaaagg actttcgctc ggacttgcac agtggaatga tcggggtaaa gtagatattt
       61 cagccaaagt atggcgtcat actggtgata aatggtcacg ccaatccgaa gaacttccgc
      121 tacaccgtgt gcttgatttg gccattttaa ttgctagaac caaagtccat ttcaaagatg
      181 cttaccgctt acctcatttt tatgacaaag aaaatcctac gcttgatcgc atcggcttgc
      241 aaggagatgc gctgactatt gctgtttgtg aagataacga atatatcgat gaggacatgc
      301 aattgttcga acaagtttta aaaaatgatg atgaactcct cagcgaacgc ctcaaaacat
      361 taagcaaact attacaagaa gcaggttatt aaggacgtga aataattgaa taaagacaat
      421 cgtaaagaac taattcgtgc atataaagaa aaatctcccg atgccggggt ttaccgtttt
      481 atcagtacaa aaagtggtaa atccttaatt gataacacaa tggatttaaa aggaatcgcc
      541 aataaacttg ctttcggagt gaaaattgga gcgggaaata tgctaccacc agaaatggca
      601 aaagaagcaa aggaatatgg tattgacacc attcaatttg aaattcttga aaaagtagat
      661 attaagcccg aaatgacaaa agaagatatt aaagaagaaa atgatgtact ccttagttta
      721 tggctagaac gtgaagatat ctgagacctt tca
//
LOCUS       DABQVC010000373          741 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.375,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000373 DABQVC010000000
VERSION     DABQVC010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.375"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            225..>741
                     /locus_tag="IBJ56_002952"
     CDS             225..>741
                     /locus_tag="IBJ56_002952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419185.1"
                     /translation="MEMKKLIKCTAPIFIATLIILPVSPSISALANETSEISEGINAT
                     EKTIETEELVVEEISNDEYQVLDKETNETTSIEFSKNHMQSTITNPDGTIDTMIKKDN
                     LIYLNGEVIGEEVKEESRQLLKASAYKYVTTFKTKMSLKKTSASIAVSLAGLLGGPVG
                     VFSTVAGMLLTL"
BASE COUNT          282 a          111 c          135 g          213 t
ORIGIN      
        1 acacttaggt agcaggctgc ataaataatg aataacaagc taaagtgtgg ctttttttgc
       61 aaaaaaaatc acaaagttac acaatatgtg taagaataag tatcaataac cctcactttt
      121 ggtcgttcac gacaagaatc gggcatttca ttacattttt ggttatacat tggcttttca
      181 tgatacatta catgtgtaag acatataaag gagatggtac ataaatggaa atgaaaaaac
      241 ttattaaatg cactgcacca atctttattg ctacgctcat tattttgcct gtttctccgt
      301 ctatttcagc attggcgaat gagacctcag agattagcga agggattaat gcaacagaaa
      361 aaacaattga aacagaagag cttgtcgtag aagaaattag taatgatgaa tatcaagtac
      421 tggataaaga gacaaatgaa acaacttcaa ttgaattttc aaaaaatcat atgcaatcta
      481 ctattacaaa tccagatggc actatagaca caatgattaa aaaggataac ttaatttacc
      541 taaatggtga agttataggt gaagaggtaa aagaagaatc gagacaatta ttaaaagcct
      601 ctgcttataa atatgttacg acgtttaaaa caaaaatgtc actaaagaaa acaagtgcat
      661 ctattgcagt gtcattagct ggtttgcttg gaggacccgt tggagtattt agtacagtag
      721 caggtatgct actaacattg a
//
LOCUS       DABQVC010000374          729 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.376,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000374 DABQVC010000000
VERSION     DABQVC010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.376"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..724
                     /locus_tag="IBJ56_002953"
     CDS             <1..724
                     /locus_tag="IBJ56_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAM3419186.1"
                     /translation="ARQVAMSGGNVIITARSTKKLIELQKDIHDNFSVEATYFTLDMT
                     DFEQVKQVSAEINASYQIDVLVNCAGFGLFENAVDIPFETIEKMFDTNVLGLIQLTQL
                     ILPQMQARKAGHIINIASQAAKIATPKSTVYSATKYAVLGFSNALRLELMPDKIHVTT
                     INPGPIATNFFDVADKSGNYLETVGKLVLKPEKVARKTVQIMGTKRREINLPFVMNIA
                     TRLYQVMPQVIEFFGKGAFLKK"
BASE COUNT          257 a          123 c          135 g          214 t
ORIGIN      
        1 cgcaagacaa gttgctatgt ccggtggtaa tgttattata acagccagaa gtacgaaaaa
       61 attaatagaa ttacaaaaag atatacatga taatttttca gtagaagcga cttattttac
      121 tttagatatg actgattttg agcaagtgaa acaagtcagc gcagagataa atgcatccta
      181 tcaaattgat gtgttagtca actgtgcagg ttttggttta tttgaaaatg cggtagatat
      241 tccatttgag acaattgaaa aaatgtttga tacgaatgta cttggcttaa ttcaactcac
      301 acaactgatt ttaccgcaaa tgcaagcgcg caaagctgga catattatta atattgcttc
      361 ccaagccgct aaaatcgcta cacctaaatc aaccgtttat tcagccacga aatatgcggt
      421 tttaggcttt tctaatgcac ttcgtttaga actaatgcca gataaaatcc atgttacaac
      481 gattaatcct ggcccgattg ccacaaactt tttcgatgta gcggataaat caggaaacta
      541 tttagaaaca gttggcaaat tagtgttaaa gccagaaaag gttgcgcgta aaacagtaca
      601 aattatggga actaagcgtc gcgaaatcaa tttacctttt gtaatgaata tagcaacacg
      661 actttatcaa gtaatgccac aagttatcga attcttcggt aaaggggcat ttttaaagaa
      721 ataaaatgg
//
LOCUS       DABQVC010000375          727 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.377,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000375 DABQVC010000000
VERSION     DABQVC010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.377"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..361)
                     /locus_tag="IBJ56_002954"
     CDS             complement(<1..361)
                     /locus_tag="IBJ56_002954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2705 domain-containing protein"
                     /protein_id="HAM3419187.1"
                     /translation="MKNNKLIILVVICLFLQAILFMAFDFPFKTLPILDGFPVGLATP
                     VVTRLLLYWYLPIIAFSFYISGNLKDLLSSYGFLQISRNYKKEYWLMKQFLKLLIKVI
                     LFTSLQLALIFIFTPYSI"
     gene            complement(363..>727)
                     /locus_tag="IBJ56_002955"
     CDS             complement(363..>727)
                     /locus_tag="IBJ56_002955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="WxPxxD family membrane protein"
                     /protein_id="HAM3419188.1"
                     /translation="LSNKLLTATHFYSGIFFYFLLLVLFYLAIGFLFRIIYDLTTSTG
                     QALIFGAFVICIVYLIDWIILEGIYWTPLHNLNFFDLWLQNGSISSDIPFILIPNAAV
                     AFILYLISSNTFIKKDFY"
BASE COUNT          307 a           96 c          116 g          208 t
ORIGIN      
        1 atatagaata gggcgtgaat ataaaaatta aagcgagttg taaactggta aaaagaataa
       61 cttttattaa cagttttaaa aattgcttca ttagccaata ttctttttta tagtttcgag
      121 aaatttgtaa aaaaccataa ctagacaata aatcttttaa attacctgaa atatagaaac
      181 taaaagcaat aatcgggaga taccagtaaa gcaataatct ggttactacc ggtgtggcta
      241 atcctactgg aaatccatct agtattggta atgttttgaa cgggaagtca aaggccatga
      301 ataatattgc ttgtagaaac aaacaaataa ctactaaaat gataagttta ttattcttca
      361 tactagtaaa aatccttttt tataaaggta ttagaactaa tcaagtatag gataaatgct
      421 accgcggcgt ttggaattag aatgaacggt atatcagaac taatagaacc attttgtaac
      481 caaagatcaa agaaatttaa attgtgaaga ggtgtccagt atataccttc taaaattatc
      541 caatcaataa gataaacaat gcatatcacg aaagctccaa agataagcgc ttggccagtt
      601 gaagtagtta agtcatatat aattctgaaa agaaaaccaa tagctaaata aaagagaaca
      661 agtagcaaga agtaaaaaaa aattccacta taaaaatgag tagcagtgag caatttatta
      721 cttagaa
//
LOCUS       DABQVC010000376          722 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.378,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000376 DABQVC010000000
VERSION     DABQVC010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.378"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            110..>722
                     /locus_tag="IBJ56_002956"
     CDS             110..>722
                     /locus_tag="IBJ56_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HSP90 family protein"
                     /protein_id="HAM3419189.1"
                     /translation="MENYSHRFQVNLAGMIDILSNHLYDEKDVYIRELLQNATDAIRA
                     RKKIDSTLEGKIHASLTGDNNEKTLIVEDNGIGLTEDEVHAFLATIANSSKGEKNFDG
                     ESSNDFIGRFGIGLLSCFIVSDEIVMISTSKKDGGTTEWRGKADGTYSVRKIETETRE
                     PGTQVYLRLRADLDEHPECEDVEELINTLKKYGSSLESNIIVEI"
BASE COUNT          248 a          117 c          139 g          218 t
ORIGIN      
        1 atttaccact gatataaatt cttaaacatc tattattgtt ttctcattat ttatctcttc
       61 ttttatgata gaataaaaag gacttttgta caactaggag gaccaagcta tggaaaatta
      121 ttctcaccgc tttcaggtga acttggctgg tatgattgac attctctcaa accaccttta
      181 tgacgaaaaa gatgtttata ttcgcgaatt actgcaaaat gcaaccgatg ccattcgcgc
      241 caggaaaaaa atcgattcaa ctttagaagg taaaatccat gcatctctaa ctggagataa
      301 taatgaaaaa acattaattg tagaagacaa cggaattggt ttaacggaag atgaggttca
      361 cgcttttcta gctactattg ctaattcatc aaaaggcgaa aaaaactttg atggagaaag
      421 ttccaatgac tttattggtc gttttgggat tggtttactt tcttgtttta ttgttagtga
      481 tgaaattgta atgatttcta cttccaaaaa agatggtggc acaacagaat ggcgcggaaa
      541 agcggacgga acttattcgg ttcggaaaat agaaacggaa actcgcgaac caggtacaca
      601 agtgtatttg cgcttacgag ctgatttaga cgagcaccct gaatgcgagg acgtagaaga
      661 attaatcaat acactcaaaa aatatggttc ctctttggaa agtaatataa tagtagaaat
      721 ta
//
LOCUS       DABQVC010000377          717 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.379,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000377 DABQVC010000000
VERSION     DABQVC010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 717)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.379"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..274
                     /locus_tag="IBJ56_002957"
     CDS             <1..274
                     /locus_tag="IBJ56_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419190.1"
                     /translation="FQKYADGIYEKEIDLEQLENLYYIIPKAVYEGNNFMIRPNMKNE
                     GICLGTNDSELAKELKFERTDKYLYEKWVPESEIEIMEERKNIPLN"
     gene            329..694
                     /locus_tag="IBJ56_002958"
     CDS             329..694
                     /locus_tag="IBJ56_002958"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419191.1"
                     /translation="MDREILTQGVIDSFLDGNYRTVKTTEEITVYRVFGGNAKSTGSF
                     VTINKAISRIDAKIDMALLPEWKNTRMYEAEIIIPKGQQINIGENCTSSNRVDRYNIK
                     RRGIDGDSNTTRTKCFKIN"
BASE COUNT          303 a           76 c          145 g          193 t
ORIGIN      
        1 tttccaaaag tatgctgacg gtatctatga aaaagaaatt gatttagaac aattagaaaa
       61 tctgtattat ataattccga aagcggtgta cgaaggaaac aattttatga taagacctaa
      121 tatgaaaaat gagggaattt gtttgggaac aaatgattct gagttagcaa aagaattaaa
      181 atttgaaaga acagataaat atttatatga gaaatgggta cctgagtctg agatagaaat
      241 catggaggaa cgaaaaaata tacctttaaa ttaacttaat gagtggctaa atatagaact
      301 aaaatagatg ataaagtaag ttattgaaat ggatagagaa attctaactc agggagtaat
      361 agattccttc ttagatggaa attatcgtac agtaaaaact actgaggaaa taacggtgta
      421 tagagtattt ggcggaaatg caaagtctac aggaagtttt gtgactataa ataaggcaat
      481 aagtcgaata gacgcaaaaa tagatatggc attattacct gaatggaaga atacacgtat
      541 gtatgaagca gaaataatta ttcctaaagg ccagcaaatt aatattgggg aaaattgcac
      601 ctcaagtaat cgagtcgaca gatacaatat taaaaggagg ggtatagatg gagatagtaa
      661 tacaacgcgc acaaaatgtt ttaaaattaa ttgatgaaga gtttcctaac caaaaat
//
LOCUS       DABQVC010000378          715 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.380,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000378 DABQVC010000000
VERSION     DABQVC010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.380"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(78..151)
                     /locus_tag="IBJ56_002959"
     tRNA            complement(78..151)
                     /locus_tag="IBJ56_002959"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(117..119),aa:Cys,seq:gca)
     gene            complement(171..242)
                     /locus_tag="IBJ56_002960"
     tRNA            complement(171..242)
                     /locus_tag="IBJ56_002960"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(208..210),aa:Gly,seq:gcc)
     gene            complement(248..319)
                     /locus_tag="IBJ56_002961"
     tRNA            complement(248..319)
                     /locus_tag="IBJ56_002961"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(285..287),aa:Gln,seq:ttg)
     gene            complement(349..421)
                     /locus_tag="IBJ56_002962"
     tRNA            complement(349..421)
                     /locus_tag="IBJ56_002962"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(386..388),aa:His,seq:gtg)
     gene            complement(437..510)
                     /locus_tag="IBJ56_002963"
     tRNA            complement(437..510)
                     /locus_tag="IBJ56_002963"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(476..478),aa:Trp,seq:cca)
     gene            complement(518..601)
                     /locus_tag="IBJ56_002964"
     tRNA            complement(518..601)
                     /locus_tag="IBJ56_002964"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(565..567),aa:Tyr,seq:gta)
     gene            complement(622..694)
                     /locus_tag="IBJ56_002965"
     tRNA            complement(622..694)
                     /locus_tag="IBJ56_002965"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(659..661),aa:Phe,seq:gaa)
BASE COUNT          208 a          187 c          163 g          157 t
ORIGIN      
        1 tccagcgcgt ctgccaattc cgccacgccg gcgtaacaat ataataaatt ataactttaa
       61 aacattaatt atgcaaatgg aggcgccaac cggatttgaa ccggtgataa aggttttgca
      121 gacctctgcc ttaccacttg gctatggcgc cgcacaatgt tcaatttaaa agcggaagac
      181 ggggttcgaa cccgcgaccc ccaccttggc aaggtgatgt tctaccgctg aactacttcc
      241 gcattaactg ggccagctgg attcgaacca acgcatgacg gagtcaaagt ccgttgcctt
      301 accgcttggc tatggcccaa caattatatt agacttaaaa acaaaaaggg cggatgatgg
      361 gaatcgaacc cacgaatgcc tgaaccacaa tcaggtgcgt taaccacttc gccacatccg
      421 ccattatttt aatatatggc aggggcagta ggaatcgaac ccacactgga ggttttggag
      481 acctcagttc tacctttaaa ctatgcccct ataaaaatgg tggaggggag tggattcgaa
      541 ccaccgaacc cgaaggagcg gatttacagt ccgccgcgtt tagccacttc gctacccctc
      601 catattaaaa aaagaaaaaa gtggcttggg acagaatcga actgccgaca ccttgagctt
      661 caatcaagtg ctctaccaac tgagctacca agccataatg gcggtcccga cggga
//
LOCUS       DABQVC010000379          705 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.381,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000379 DABQVC010000000
VERSION     DABQVC010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.381"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
BASE COUNT          260 a           87 c          145 g          213 t
ORIGIN      
        1 gaactgtctg tcaagatttc tggattctaa cttgttcgag atagaaaatt acaagaaaga
       61 tgccatttgt cttattaacg aaaaaaatac ttatgtagtg ggttattgtg atatagatat
      121 gatttttcat acaataagta atgataactc tagtttgaca atgggagcta aagttctagc
      181 taatttcacc tggaaatata tgtattttaa acaaatgatt aaagaatatg acatagaatt
      241 agatcagaat caagtggatt ataaggctat tttacgtaat ttgttgaacc ttaaaaatta
      301 gagcttaagt aaaggtgagt ctaatgagca gtatacagat aaagctatat ctgctgctga
      361 cgaaaatcct agaattttgg aagaattatt aggacttgat cctatgagtt taggagaaaa
      421 ccctgtgtta gtagatataa aaaaccacca atatgagagt acctagtggt aatgaatcag
      481 gtgcttggca aagtttttgg gaaccactat tctttcccat tacaaaagcg ctgatgggaa
      541 aagcgttcaa gtcatgagac ggtgcctatg aagtaatgaa atatgctgaa acaggtttat
      601 ggccagagaa aaatacagaa gaagagtaat tttataaaat aaaaagatac tttatcttcg
      661 gtttggtatt ggaacggaaa gtcgtgaata gtaagagcaa gctcg
//
LOCUS       DABQVC010000380          683 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.382,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000380 DABQVC010000000
VERSION     DABQVC010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.382"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            7..>683
                     /locus_tag="IBJ56_002966"
     CDS             7..>683
                     /locus_tag="IBJ56_002966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014598965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HAM3419192.1"
                     /translation="MSSIIVVGIMFFQSLTTYPFITEAKENEQKEEINKPSKITKGLT
                     NSLKYTKTILETGDTYDSVFPDSALAKVVAKEATGSENTTQLVTQADLNKIKSLNGYN
                     KGISVLTGIDLLVNVTSISLNNNQVTDISPIDQLPNLVSLSVKNNQISSLILNAQNQL
                     PKLTTIDIENNPDLNTIDIQDQHQLVDVKTSGYTGLRKLTTVIAKNNPELVNLGQYTI
                     RNVYFSQV"
BASE COUNT          277 a          127 c          103 g          176 t
ORIGIN      
        1 agaaagataa gttctatcat tgtagtcggg ataatgttct ttcaatcatt aactacgtat
       61 ccatttatca ccgaagccaa agaaaatgaa caaaaagaag aaataaataa accctcaaaa
      121 ataactaagg gattaactaa ttccctaaaa tacactaaga caattcttga aacaggggac
      181 acctatgata gtgtatttcc tgacagtgct ttagctaaag tagttgctaa agaagcaacg
      241 gggtcagaga atacaactca gctagtaaca caagcagacc tgaataaaat caaatctctc
      301 aatggttata ataaaggaat cagcgtatta acaggaatcg atttgctagt caatgtgaca
      361 agtataagct tgaataataa tcaagtaaca gacatttctc caatagatca attacctaat
      421 ttagtaagcc tatcggtaaa aaacaatcaa attagcagtc ttatcttaaa tgcgcaaaat
      481 caactcccga aactaacaac cattgatatt gaaaataatc ctgaccttaa tactatcgat
      541 atccaagatc aacaccaatt ggtagatgta aagacatccg gttatacagg attacgcaag
      601 ttaacaacgg taattgccaa aaacaatcca gaattagtca atttaggcca atacactatc
      661 cgaaatgtct actttagcca agt
//
LOCUS       DABQVC010000381          682 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.383,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000381 DABQVC010000000
VERSION     DABQVC010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.383"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>682
                     /locus_tag="IBJ56_002967"
     CDS             <1..>682
                     /locus_tag="IBJ56_002967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
                     /protein_id="HAM3419193.1"
                     /translation="DFDFENLWDYEFNKKIINWLHTKNNAQKTIALIGIRQQESLNRY
                     NAIHKKERMYKTYNWTTEISKNIYNAYPIHDWQVEDIWVANAKFNWSYNKIYDLFYHA
                     GLTVHEMRVASPFNDAATESLKLYRVIEPALWSKLVGRVNGANFTAIYGGTSAMAWKE
                     IKLPKNHTWKSYLEFLLTTLPSYTRERYLKKFKTSITYWTEKGGALKVETVEELKNLD
                     IQADFLGKP"
BASE COUNT          253 a          121 c          115 g          193 t
ORIGIN      
        1 ttgactttga ttttgaaaac ctttgggatt atgaatttaa taaaaaaata attaactggt
       61 tacatactaa aaataacgcc caaaaaacca ttgctttgat tggtataaga caacaagaat
      121 ctcttaatcg ctataacgca attcataaaa aagaacgaat gtataaaaca tacaattgga
      181 cgaccgaaat ttccaaaaac atttacaacg cctatccaat tcacgattgg caagtagaag
      241 atatatgggt cgcaaatgca aagttcaatt ggtcttataa taaaatttat gatttatttt
      301 atcatgctgg cctaactgtg cacgagatgc gtgtcgccag tccttttaac gatgctgcta
      361 cagaaagtct taaactgtac agggtcatcg aacctgcgct ttggtccaaa ttagtcggcc
      421 gggtgaatgg cgccaatttc actgccatat acggtggcac ttccgcaatg gcttggaaag
      481 aaattaaact acctaaaaat catacttgga aatcatattt ggaattttta ctcacaactt
      541 taccaagtta cactagagaa cgctatttaa aaaaattcaa aacaagtatt acctattgga
      601 ccgaaaaagg tggtgcttta aaagtagaaa ctgtagaaga attaaaaaat ttagatatac
      661 aagcagactt cctaggtaaa cc
//
LOCUS       DABQVC010000382          660 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.384,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000382 DABQVC010000000
VERSION     DABQVC010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.384"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            50..>660
                     /locus_tag="IBJ56_002968"
     CDS             50..>660
                     /locus_tag="IBJ56_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419194.1"
                     /translation="MKSKTKQIIMIGVVLFQSLFAYPLITMAEENESKSVNTETTLEP
                     KVALEEKTPQKPTLTNNLKQEKTVLQAGETYETVFPDAALATVIAKAATGSEDITQEV
                     SQTDLNKITSLTATSKGIVDLTGIDLLSKLTSLSISGNQITDISALNGLVNLSNLNVS
                     NNKITSFNLNANSNLPMLSAVDIRSNNLKNINVQDQPKLRTIE"
BASE COUNT          253 a          126 c          106 g          175 t
ORIGIN      
        1 cattctatta ttactgaaga tgctaacaac aacgagaagg agatagatta tgaaaagcaa
       61 aacaaaacag attatcatga ttggagtggt cctttttcaa tcactcttcg catacccgtt
      121 aatcaccatg gcggaagaaa atgaatcgaa atcagtaaat acagaaacca cgttagagcc
      181 taaagtagct ctcgaagaaa aaacgcctca gaaacctacc cttaccaata atctgaagca
      241 agaaaaaact gtccttcaag caggcgaaac atatgaaact gtttttcctg atgcagcttt
      301 agctactgta attgcaaaag cagcaactgg ttcagaggat atcacgcaag aagtatcgca
      361 aacagacttg aataaaatca cttcactaac tgctacatct aaagggatag ttgatttaac
      421 aggaatagat ttactttcaa aattaacctc tttaagtata agcgggaacc aaatcactga
      481 tatttctgca ctcaatggtc tcgtgaattt gtccaatcta aatgtatcta ataataaaat
      541 aacaagtttc aacctaaacg cgaatagtaa tttacctatg ttaagcgctg ttgatattcg
      601 tagtaataac ttaaaaaata taaatgttca agaccaacct aaattacgca ccattgagtg
//
LOCUS       DABQVC010000383          641 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.385,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000383 DABQVC010000000
VERSION     DABQVC010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.385"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..558)
                     /locus_tag="IBJ56_002969"
     CDS             complement(<1..558)
                     /locus_tag="IBJ56_002969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HAM3419195.1"
                     /translation="MRKVFMFLSTALLLAILSLSFTGLDLKAKAASDLYPLPAPIIDV
                     FPDDGLAKDMARNLNKDSVNDVIDQDDLDALTSLGFETHTITNDSMQLLERAMFNNVT
                     DVSIMEFGAKLTEFPDITTIPHLKTLFFADSPGRLTRNLSLPNYQNYPEMDTITMSGN
                     NLVGSIPDFTGMPALKQLYMSDMSIT"
BASE COUNT          221 a          109 c          109 g          202 t
ORIGIN      
        1 tgtaattgac atatcagaca tataaagctg ttttaaagca ggcatcccgg taaagtcagg
       61 gatagagccg actaaattat ttccgctcat tgtaatggta tccatttcag gataattttg
      121 gtagtttgga agggataagt ttctagttaa tcttccaggt gaatcagcaa aaaataacgt
      181 ttttaaatgt ggaattgtag taatatcagg gaactccgtt aatttagccc caaattccat
      241 aatacttaca tctgtgacat tgttaaacat ggcacgctct agtaattgca tggaatcatt
      301 cgtaatcgta tgtgtttcaa accctaaact agttaatgca tccaaatcat cttgatcaat
      361 aacatcattc acagagtctt tgtttaagtt tctagccata tctttggcta atccatcatc
      421 tgggaaaaca tcaataattg gagcgggtag tggatataaa tcagaagcag cttttgcctt
      481 cagatctaaa ccagtaaagc ttagtgacaa aatggctaat aataaagctg tgcttaaaaa
      541 catgaaaact tttctcaatg tattcagtcc tttctttttt agaggtctaa aggataacac
      601 gaaaaaacca agaaaaaata tttacaccat atatgaacat t
//
LOCUS       DABQVC010000384          634 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.386,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000384 DABQVC010000000
VERSION     DABQVC010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.386"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
BASE COUNT          240 a           82 c          104 g          208 t
ORIGIN      
        1 cacaacttca gaactattgt catatcaacg cgtttaaaaa cttattattt gttccaagtg
       61 aaataaatct attaatgatt taaccccgta tttgctacac cttaaataga tattaacaca
      121 aaggaagtac aacatgaaaa aaatcatcaa gattattttt attggataca ttatggacga
      181 tgattcaaac aaaagaaggg atggattcac cgctctggct tccattgctt tactaagtta
      241 atataccgct catgaatatt tatgcgataa aaatataata ttttatatat tgagagagat
      301 aattgtatta aatattcatg ggtagttcct attaggtgaa catttagtga agtatatgtc
      361 ataaaatgaa taaaaaacta ataatcgctc taaaacgagt ggaaataggc ctttttaggc
      421 aaagttattt cagaaagagt aagaataatt ctaaataaga atgcttttta gtcattcacg
      481 acataaaaca gacatttcat tacatttttg gttatacact cagttttcgt gttacaattt
      541 ttttgttcga tgaaaggtaa taaaaagcac agtctactac gggaaaatga tgggtgattg
      601 tatgttttaa agtgaggtga atacaaaaag ggag
//
LOCUS       DABQVC010000385          629 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.387,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000385 DABQVC010000000
VERSION     DABQVC010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 629)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.387"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..329
                     /locus_tag="IBJ56_002970"
     CDS             <1..329
                     /locus_tag="IBJ56_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419196.1"
                     /translation="YQGVLFDLSYDYLPEMFSPKSLENKLISILITIYSYYPYYFSFI
                     DTEAEVDMFHNPRNIEPLESPYATLILPKNDDFHVYLNTWEIDGISERKKKHYVIKNT
                     PLHRTN"
     gene            356..>629
                     /locus_tag="IBJ56_002971"
     CDS             356..>629
                     /locus_tag="IBJ56_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419197.1"
                     /translation="MIHLKGITTAGAYDNQGKYLEEIHEDIEKIMKRLILQFDIYQFH
                     ISSNFEAAADKSVLVKQTRFRKTYIHFYKEDEERFKEGSSYDQYFLL"
BASE COUNT          235 a           83 c          108 g          203 t
ORIGIN      
        1 actatcaagg ggttttgttt gatctatcgt atgattactt gcccgagatg ttttcaccaa
       61 aaagtttgga aaataaatta atcagtattt taataactat ttattcatat tatccctatt
      121 attttagttt tattgacacg gaagcagaag tggatatgtt ccataatcct aggaatatag
      181 aacctcttga aagcccgtat gcaacattaa ttctcccaaa gaatgatgac tttcatgtgt
      241 atctaaatac ttgggaaatt gacggtataa gtgagaggaa gaaaaagcat tatgttatta
      301 agaatacacc actccaccga acaaactaaa aaaagaattg gagaagcata gataaatgat
      361 tcatttaaaa ggtataacta ctgcgggtgc ttatgataat caaggtaaat atttagaaga
      421 aattcatgaa gatattgaaa aaataatgaa gcggctaatt cttcaatttg atatatatca
      481 atttcatatt tccagtaatt ttgaggcagc tgctgataaa tcagtccttg tgaaacaaac
      541 tagatttaga aagacatata ttcattttta taaagaggat gaagaacgat ttaaagaggg
      601 atctagctat gaccagtatt ttttattag
//
LOCUS       DABQVC010000386          615 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.388,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000386 DABQVC010000000
VERSION     DABQVC010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.388"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            377..>615
                     /locus_tag="IBJ56_002972"
     CDS             377..>615
                     /locus_tag="IBJ56_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HAM3419198.1"
                     /translation="MKKTVVAIAAGLIIAGSGSTQAFAAEYKVQDGDSLWKISNENNV
                     SIKQLKEDNNLSSDIIFPNQTLQVNSSEKKSTTNN"
BASE COUNT          244 a           96 c           98 g          177 t
ORIGIN      
        1 ataaagagcc atatttcata atgaatttta aaaatcccac cccaaaaaac aacaaaatca
       61 ataaattatc agctcaattt gtaatggaaa aattttccaa ttttagttac ttcgcacatt
      121 taattcatta agtgaacaat caggaaacct tttattaatt gactaaatcc ccacggcgag
      181 ttaggctaga ttgattttca cagaaaatac aaccagtagc aatagaaatc agacaataaa
      241 ggcaatttac aaatattgca ggaaaacgga tactatttga aagtgtgtca tacatgctta
      301 atttttcagt aaccaagctg atagtttcgt atggtacgat tatcctcgaa agttatcaag
      361 gagggaaaat aattacatga agaagacagt agtagccatt gcggctggtt taattattgc
      421 aggatctggt tcaactcaag cttttgcagc tgagtataaa gtgcaagatg gtgattcact
      481 atggaaaata tcaaatgaaa ataatgtctc tataaaacaa ttgaaagaag ataacaattt
      541 gagttctgac attatttttc cgaaccaaac attgcaagta aatagtagtg agaaaaaatc
      601 cactactaat aacaa
//
LOCUS       DABQVC010000387          610 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.389,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000387 DABQVC010000000
VERSION     DABQVC010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.389"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..259)
                     /locus_tag="IBJ56_002973"
     CDS             complement(<1..259)
                     /locus_tag="IBJ56_002973"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465679.1"
                     /note="Catalyzes the rate-limiting step in dNTP synthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HAM3419199.1"
                     /translation="MKWGLQMTTYIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLE
                     DYKRKVFNFVEKKEDYAADELVDYLIREAEARTDIHIPEWEH"
BASE COUNT          179 a          120 c           86 g          225 t
ORIGIN      
        1 aatgttccca ttcaggaata tgaatatcag tacgagcttc tgcttcccta attaaataat
       61 cgactaattc gtcagccgca taatcttcct tcttctctac aaaattaaaa accttacgtt
      121 tgtaatcctc caaatcaagt ttcggaaatt cttcatggat tttctctaaa tatccatcca
      181 atcggctttt gtcaaaaggt agctttctgt ttcccccgtc ttttactatg taagttgtca
      241 tttgcaatcc ccatttcatc cttttttcct cgttgtaaaa atatctgatt cactttgcgc
      301 tttttattcg tccgctgaac tattgtggtc gttccatgga gcaaaaaaat taacttttaa
      361 aggagcaaat tcccctgata aaagttaaaa ggcgatgaag caatatttcg ctttcgatac
      421 tatatatagt ataacttttt cattgtgaat gcaagatata gtactctggt tttattacga
      481 aaagtgtcta aacaatgatt acaacaaggt tttcagcaaa taaaaaaatt ttttccggca
      541 cttgtgtgtt ttcgagcata tttcaagtat aaaaatgcta ctacttctag tgcctatttt
      601 ttcgctagtt
//
LOCUS       DABQVC010000388          609 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.390,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000388 DABQVC010000000
VERSION     DABQVC010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.390"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>609
                     /locus_tag="IBJ56_002974"
     CDS             <1..>609
                     /locus_tag="IBJ56_002974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAM3419200.1"
                     /translation="VENTQIFGYESLTRLKTDHWNAISDFIEEAEQDGLQKAFELLTL
                     HNAVKRFNKSGDTPLFVNISYDTFLENQEELHDTLLDNGKIVFEFLETSKLPQERMND
                     LEKQLLQFQKKHETKFAIDDFGSGYADLHRVFAHHSDFVKTDRLLLRDLFESDGKKIF
                     FEQLHNYVKKHHKSLIVEGVETKEQLEFLQEIGIPYAQGYYFH"
BASE COUNT          210 a          115 c          114 g          170 t
ORIGIN      
        1 gtagaaaaca cacaaatttt cggatacgag tcactcaccc gcttaaaaac agatcactgg
       61 aatgcgatta gtgattttat cgaagaagcg gaacaggatg gtctgcaaaa agcatttgag
      121 ctgctcacgc ttcataacgc agtgaaacgc tttaacaaaa gcggagacac gccactattt
      181 gtcaatattt cgtatgatac atttttagaa aatcaagaag agttgcacga taccctactt
      241 gataacggga aaatagtttt tgaatttttg gaaacatcca agttaccaca agaacgaatg
      301 aacgacttag aaaaacaact gcttcaattc cagaaaaaac acgaaactaa atttgctatt
      361 gatgattttg gctccggtta tgcggacttg catcgcgttt ttgcgcacca ttctgatttt
      421 gtcaaaaccg atcgcttatt actacgagat ttatttgaga gcgatggcaa aaaaatcttc
      481 tttgagcaac ttcataatta tgttaaaaag catcataaat ccttaattgt cgagggagtg
      541 gaaacaaaag agcagctaga attccttcaa gaaatcggca ttccctatgc gcaaggttat
      601 tattttcat
//
LOCUS       DABQVC010000389          596 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.391,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000389 DABQVC010000000
VERSION     DABQVC010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.391"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            13..>596
                     /locus_tag="IBJ56_002975"
     CDS             13..>596
                     /locus_tag="IBJ56_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3419201.1"
                     /translation="MPEKFDTVLGYLKEFPDYYKYVTKKTYTVNEKIIFEDEKAKSIF
                     FIVEGYAAVELEDNLRKTNYISIFVLPYNVLGIDAFSSYPKKKHSITVMSEHLMLYKI
                     DADFLLNILSIKPDVNDFLLTSIADVFARHYALLGMIAKTPKERIYMALENLAVEMGT
                     EDEERNEIVLPNFINQSVLARYCRTTQPNISNLLT"
BASE COUNT          211 a           94 c          105 g          186 t
ORIGIN      
        1 gggggcacta taatgccaga gaaatttgat accgtacttg gatatttaaa agaatttcca
       61 gactactata aatatgtaac gaagaaaacc tataccgtaa atgaaaaaat aatttttgaa
      121 gatgaaaaag cgaaaagtat cttttttatc gtggaaggtt atgctgcagt tgaattagag
      181 gataatttaa gaaaaacgaa ctacatttcc atctttgttc ttccatataa tgttttagga
      241 attgatgcat tttcctctta tccgaaaaaa aagcatagta ttacggtcat gagtgaacat
      301 ttgatgctct ataaaataga tgctgacttt ttactcaaca tattatcgat taaacctgat
      361 gtaaatgatt ttctcttaac aagtattgct gacgtttttg ctcgtcacta tgcgcttctt
      421 ggtatgattg caaaaacgcc gaaagaacgg atttacatgg ctttagaaaa tcttgcggta
      481 gagatgggca ctgaagatga agaaagaaat gaaattgtat taccaaactt tatcaatcag
      541 tcagttcttg caagatattg ccgcacaacg cagccaaaca tatccaattt actaac
//
LOCUS       DABQVC010000390          579 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.392,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000390 DABQVC010000000
VERSION     DABQVC010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.392"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>579
                     /locus_tag="IBJ56_002976"
     CDS             <1..>579
                     /locus_tag="IBJ56_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HAM3419202.1"
                     /translation="TVNNANSWLVLGPRSLQPGEFAKLAVIIYMSAIYAKKQSYIDDF
                     NRGVLPPIFFLAFVCFLIAIQPDTGTAFIIFLVGCCIIITSGMRLRTIMKLIGIGMGI
                     IIGLTLILFALPDSVRNEIVSPTKVARITTFMNPFEYADKEGHQLINSFYAIGSGGVS
                     GQGLGESVQKLGYLPEAHTDFIIAVVAEELGVF"
BASE COUNT          149 a          100 c          127 g          203 t
ORIGIN      
        1 acggtaaata atgcgaacag ttggcttgtt ttagggccac gttctcttca accaggagaa
       61 tttgctaaat tagccgtaat tatttacatg tctgccatct atgcgaagaa acaaagttac
      121 attgatgatt ttaaccgtgg tgttttaccg cccatattct ttttagcatt tgtatgtttc
      181 ttgattgcca ttcagccaga tactgggaca gcttttatta ttttcttagt tggttgttgt
      241 attattatca cttctggaat gcgacttcga acgattatga aattaattgg gattggtatg
      301 ggtattatta ttggactcac gctcatctta ttcgcactac cggatagtgt gaggaatgaa
      361 attgtttctc caacgaaagt agctcgtatt acgactttta tgaacccttt tgagtatgcg
      421 gataaagaag ggcaccagtt aattaattcc ttctatgcga ttggctcagg tggtgtttct
      481 ggacaagggc ttggcgaaag cgttcaaaaa cttggttact tgccggaagc acacaccgat
      541 tttattattg ccgttgttgc agaagaatta ggtgtgttc
//
LOCUS       DABQVC010000391          557 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.393,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000391 DABQVC010000000
VERSION     DABQVC010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.393"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(72..455)
                     /locus_tag="IBJ56_002977"
     CDS             complement(72..455)
                     /locus_tag="IBJ56_002977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419203.1"
                     /translation="MEIKVQKKLTDGRIAFSSEYGECVGIWADEDPEPSRVYTVEITI
                     PDMISAELLHESEEKHCALEIDEEGLVHVIGKLEDYEEDGFAVLRLEESIICFDTKFS
                     EEIEMLHGRFVEFVIPEIKLSNVGI"
BASE COUNT          157 a          137 c           65 g          198 t
ORIGIN      
        1 actccttcca aaaataacaa aaaaaagaca ggaaactctc actatctgtt tcctgcctct
       61 ttcatttcaa tctatatacc aacattactt aattttattt ccggaataac aaattcaaca
      121 aatcttccat ggagcatttc gatttcttcg ctgaatttcg tgtcaaaaca aataatactt
      181 tcttctaagc ggagcactgc aaagccatct tcctcgtaat cctctaactt cccaattacg
      241 tgaactaagc cttcttcgtc tatttctaat gcacaatgtt tctcttcact ctcgtgtagc
      301 agttctgcgc taatcatgtc cggtattgta atttctactg tgtaaaccct acttggttct
      361 gggtcttcat cggcccatat accaacgcat tcaccatatt cactactaaa agcgattctg
      421 ccgtcagtca atttcttttg aacctttatc tccactaacc atttcctcct gcgcttcaaa
      481 ttcttgcttt attatagcac aaaatagaaa aggacgttaa tttttagcaa agtattttca
      541 ctttttattt gtcattt
//
LOCUS       DABQVC010000392          546 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.394,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000392 DABQVC010000000
VERSION     DABQVC010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.394"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(162..>546)
                     /locus_tag="IBJ56_002978"
     CDS             complement(162..>546)
                     /locus_tag="IBJ56_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAM3419204.1"
                     /translation="ARQFGIFELRNKYPTEISGGQKQRTAVCRAMITEPTLIFADEPT
                     GALDSKAATNLLEGLSQAKDVRDSTIMMVTHDAFAASYCERIMFIKDGEIFTEIYRGT
                     SSRKQFFQKVLDVLALLGGGENDVI"
BASE COUNT          175 a          122 c           93 g          156 t
ORIGIN      
        1 acatggccgg tccgaataat tcccaacgtt taaacactgt gtcaatcagc gggttatatg
       61 ataacgaaac aaacgtaaaa aaaactaata cacaaacaat taacgaaaca aaataaacaa
      121 tatattgatt aaagttcttt cgcatattgg tcagcgcgac tttaaataac atcgttttcg
      181 ccacctccaa gaagcgccaa aacatctaat accttctgga agaattgttt tctagaactt
      241 gtccctcggt agatttcagt gaaaatttcg ccatctttaa taaacataat tctttcgcag
      301 taactggctg caaaagcatc gtgcgtcacc atcataatag tggaatcacg cacatctttt
      361 gcttgagaaa gtccttctaa taaattggtc gctgctttgg aatcaagcgc accagtgggt
      421 tcatccgcaa aaatcagcgt tggttctgta atcattgctc gacaaaccgc tgttcgctgc
      481 ttttgtccac cagatatttc ggttgggtac ttgttcctta actcaaaaat cccaaattga
      541 cgagca
//
LOCUS       DABQVC010000393          543 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.395,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000393 DABQVC010000000
VERSION     DABQVC010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.395"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..269
                     /locus_tag="IBJ56_002979"
     CDS             <1..269
                     /locus_tag="IBJ56_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419205.1"
                     /translation="FMACLMAGMAGLIATSSSLFFLNKKFAYPAAFFIWFLMILPNNS
                     IMFIFQPFTEYGFEIILPIFLVFSLIVLIIVGVLYLYEVKYVKE"
     gene            256..543
                     /locus_tag="IBJ56_002980"
                     /pseudo
     CDS             256..543
                     /locus_tag="IBJ56_002980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931048.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="WxPxxD family membrane protein"
BASE COUNT          149 a           85 c           82 g          227 t
ORIGIN      
        1 gatttatggc ttgcttaatg gccggaatgg ctggacttat cgccactagc tccagtctgt
       61 tctttttgaa taaaaaattt gcgtatccag ctgcattttt tatttggttt ctgatgatac
      121 ttccaaacaa ttcaattatg tttattttcc aaccttttac agaatatggc tttgaaataa
      181 ttttgcctat ttttctagtt ttcagtttaa tagttttgat aattgttggt gtcctttact
      241 tatatgaggt gaaatatgtt aaagagtaga tattttcttc taattttttc catgttcctc
      301 tttttttctg ttttttggtt cacacaaaac atggagtacc taagtttccc taaaaacaga
      361 gaacttgttc tcattatgaa tggtagtttg tatgggtata tctcaatcaa atccctttgc
      421 ttgatgcttg ttttcccgta tcttatcttt ttactactat tttcataaaa agaacaaatt
      481 gttgctttag ctagagaaaa aaaccgttta cgattctatc ataaaatatt gaaagataca
      541 gtt
//
LOCUS       DABQVC010000394          519 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.396,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000394 DABQVC010000000
VERSION     DABQVC010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.396"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..169)
                     /locus_tag="IBJ56_002981"
     CDS             complement(<1..169)
                     /locus_tag="IBJ56_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419206.1"
                     /translation="MYNLFDDILEHSIVLADALKRNWSIEVLFFKNNHHVRYKYVVPV
                     YLDHERNIVQLQ"
BASE COUNT          172 a           90 c           68 g          189 t
ORIGIN      
        1 gctgtaattg aactatattt ctttcatggt ccaaataaac aggaactaca tacttgtatc
       61 gcacatgatg attgttctta aaaaacagta cttctatcga ccaattgcgt ttgagagcat
      121 ctgctaatac tattgaatgt tctaaaatat catcaaataa gttatacatt tacttcacct
      181 cttgctaaca ttatacgaac aaacgttctt aaaatcaagt cttaaaaagt gttgtgttgc
      241 ataaaattat atgtaataat attcacatga acgattttcg ttcattattt cattcatctc
      301 atttagctgt ttgacatccc tttaaaaata aatgaaaata acagcaacct cgaataattt
      361 ttcggggtat tttttgcgta aaaaaagccc taacgttgag gttagggtgg ttaaaaatta
      421 ttgctaatca tgcgttctcc aaattctgac aatgtgtata tctttacatt ttcagcctct
      481 tttgttatct tctctttgaa ttccaaaaac acatctgaa
//
LOCUS       DABQVC010000395          516 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.397,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000395 DABQVC010000000
VERSION     DABQVC010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.397"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            202..>516
                     /locus_tag="IBJ56_002982"
     CDS             202..>516
                     /locus_tag="IBJ56_002982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAM3419207.1"
                     /translation="MQNIGDTLKFIRKSKNLTQQETCTNALSRSNYQKIENNKIMPSM
                     DRFIQILLNFNMTLEEFEFVKRDFTPSPKENILYLYSKIITSSETDMILNVISKCDDY
                     LEN"
BASE COUNT          203 a           96 c           59 g          158 t
ORIGIN      
        1 atgccagacc attcttcatg gaaaaacaat aattgcgttc atcagaagac cttgcttaaa
       61 aaactttaaa acaaccagtt aatacttttt aacaaagtta acatgtcttc tccctccttt
      121 ttcatctata cagaaatact aactcacaaa tcttacataa aattaaaaag catcaaattt
      181 gaacaaatgg agctgagttt tatgcaaaat attggagaca cattaaaatt tattcggaaa
      241 agtaaaaact taacacaaca agagacttgt acgaatgccc tcagtcgttc taactatcaa
      301 aaaatcgaaa ataataaaat catgcctagt atggatcgtt ttatccaaat cttacttaat
      361 ttcaatatga cgttagaaga atttgaattt gtaaaacggg actttacacc ttctccaaaa
      421 gaaaatatcc tttatctata ctccaagatt attacctcct ccgaaacaga tatgatactt
      481 aatgttattt ccaaatgcga tgattactta gaaaac
//
LOCUS       DABQVC010000396          515 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.398,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000396 DABQVC010000000
VERSION     DABQVC010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.398"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>515
                     /locus_tag="IBJ56_002983"
     CDS             <1..>515
                     /locus_tag="IBJ56_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HAM3419208.1"
                     /translation="KEVLIDEYQDTNMVQETILRLVTNSGEEQGNLFMVGDVKQSIYR
                     FRLAEPTLFMTKYQTYQQDGNGSGIRIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEI
                     DYDAAAELTLGASFPETTDMATELLLIDMKSVESETEDELSPQELQKNQVESRAIAMK
                     IKEMIDNKFPI"
BASE COUNT          192 a           70 c          108 g          145 t
ORIGIN      
        1 ttaaagaagt attaattgat gaatatcaag atactaatat ggtgcaagaa actatcctac
       61 gactagtaac taattcaggt gaggaacaag ggaatttatt catggttggg gatgtaaagc
      121 agtctattta tcggttccgt ttagcagaac caacgctatt tatgacgaaa tatcaaactt
      181 accaacaaga tggaaatgga agcggaatac gtattgattt gtcgcaaaac tttagaagta
      241 gaaaagaagt tttagatgcg actaatttta tatttcatca attgatggat aagcacattg
      301 ctgaaattga ttatgatgca gcggcggaat taactttagg cgcaagtttt cctgaaacga
      361 ctgatatggc gacggaacta ctgctaattg atatgaagtc tgtggagagt gaaactgaag
      421 atgaattgtc acctcaagaa ttacaaaaaa atcaagtgga atcacgtgca attgcaatga
      481 aaattaaaga aatgatagac aataagtttc ctata
//
LOCUS       DABQVC010000397          513 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.399,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000397 DABQVC010000000
VERSION     DABQVC010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.399"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..179)
                     /locus_tag="IBJ56_002984"
     CDS             complement(<1..179)
                     /locus_tag="IBJ56_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M4"
                     /protein_id="HAM3419209.1"
                     /translation="MKSKLICIIMVIAFQAHFNMAVKADSVGEERLRNNIQAKRNPAD
                     LKALPDSCEAKDFYK"
BASE COUNT          164 a           82 c           78 g          189 t
ORIGIN      
        1 tttttataaa aatcttttgc ttcgcaggaa tctggcaaag cttttaaatc agcagggttc
       61 cttttggctt gtatattatt tcggagcctt tcttccccga cagaatccgc ttttaccgcc
      121 atattgaaat gagcctgaaa agctattacc atgatgatac aaataagttt actcttcatt
      181 tcaccgctcc ttttcaattc gtaaaagtaa gtttaagcca cctacaacta atctgacaga
      241 gagagttaag gacacgtttt ttagcatatg tgggaactaa attatacgtt ttgcagtaga
      301 aactataggt ggcttaaact atgggatatg cttatattat atggaaaaac aatcagacat
      361 tcttttacat ttgttaattc ttctagaaaa attaaaaaaa taagcctgtt tctacattct
      421 tcataaaata atttatgaaa agtgcaaaac aagcttattt ttcgtgtgtg tgttaagcgg
      481 ttttattctt aattttttta ttaattttta aaa
//
LOCUS       DABQVC010000398          508 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.400,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000398 DABQVC010000000
VERSION     DABQVC010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.400"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(136..>508)
                     /locus_tag="IBJ56_002985"
     CDS             complement(136..>508)
                     /locus_tag="IBJ56_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419210.1"
                     /translation="LYLLFEQALKDFKQSKLSKKEFFDILDELTMRQVDTYEILKEPL
                     RGQLDNELYNLWNTENYDDVDIITSLLINLGLKNTYNKMKKSIEDTSEISPEILEEIQ
                     DAIEEVGDNIDDPYQDYMKKM"
BASE COUNT          164 a           92 c           52 g          200 t
ORIGIN      
        1 cgttatatac ccaaacagga taacatttat aatctaaaaa cagtcttaat tctttcatta
       61 aaatacgctc ctttatttga ttgaaacagg attagcacca acaatgaaac cattcttgcc
      121 tactgtaatc gcattctaca ttttcttcat ataatcttga tatggatcat ctatattatc
      181 tccgacttct tcaattgcat cttgtatttc ctcaagtatt tctggtgata tttccgaagt
      241 atcctcaata gattttttca ttttattata agtatttttc aagcctaaat taattaacaa
      301 tgatgtaata atatctacat catcataatt ttctgtgttc cataaattat ataactcatt
      361 gtcgagctgt cctctcaaag gttcttttaa aatttcatag gtatctactt gcctcatagt
      421 caattcatca agaatatcaa aaaactcttt tttacttaat ttgctttgct taaagtcctt
      481 gagtgcttgt tcaaataaaa gatataaa
//
LOCUS       DABQVC010000399          507 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.401,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000399 DABQVC010000000
VERSION     DABQVC010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.401"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>507
                     /locus_tag="IBJ56_002986"
     CDS             <1..>507
                     /locus_tag="IBJ56_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HAM3419211.1"
                     /translation="RKIPFDGVLAGHVFLPSLVNLVSKRLNLPFFGTEAIKNTTSKEK
                     TREIMKEMEMFEANYFKFSSKDEIIKHKDNLDYPCIVKPLNGFGSINVERVNSLDDLL
                     VSFKKHTSNLNYSILGPVFSEQILVEPYIEGKEFSVESIVEEGNVNSIMITEKIFNEK
                     FENVENGHI"
BASE COUNT          202 a           59 c           88 g          158 t
ORIGIN      
        1 agaaagatcc catttgatgg cgtgttagct ggccatgtgt ttctaccttc tctcgtaaat
       61 ttagtttcta aaagattaaa cttacccttt tttggaactg aagctataaa aaatactaca
      121 tcaaaagaaa agactagaga gataatgaag gagatggaaa tgtttgaagc aaactatttt
      181 aaattttctt caaaagatga aatcataaaa cataaggata atttggacta tccatgtata
      241 gtgaaacctc taaatggatt tggaagcata aatgtagaaa gagtaaattc attagatgac
      301 ttgttagtat catttaaaaa acatacgagt aatcttaatt atagcatact aggaccagtt
      361 ttttctgagc aaatattagt tgaaccctat attgaaggaa aggaattttc agtagaaagt
      421 attgtcgaag aaggaaacgt aaattcaata atgattactg aaaagatatt caatgaaaaa
      481 tttgaaaatg ttgaaaatgg tcatatt
//
LOCUS       DABQVC010000400          502 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.402,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000400 DABQVC010000000
VERSION     DABQVC010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.402"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>502
                     /locus_tag="IBJ56_002987"
     CDS             <1..>502
                     /locus_tag="IBJ56_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3419212.1"
                     /translation="YKKITTPVEVAKDVTVTYKDTKGNQLADPVILKGDIGSTFETEA
                     KSFKGYKLTKTPSNHIGSFTSDSQEVDYVYSKDSSIITPPVDPDKPIVINPVKPVNPA
                     TPTVPNKNIPKKKITKTVNQTDKTTTASELPKTGDSENNLPLIIGVSLLISGVYIFTT
                     RRKRVK"
BASE COUNT          213 a           94 c           74 g          121 t
ORIGIN      
        1 aatataaaaa aataacaacg cctgttgaag tcgcaaaaga tgtaactgta acgtataaag
       61 acactaaagg aaatcaactt gctgatccag ttattttaaa aggtgacatc ggatcaactt
      121 tcgaaacaga agcaaaatct tttaaaggct ataaattaac taaaacacca agtaaccaca
      181 ttggctcatt tacgagtgat agtcaagaag ttgattatgt atatagtaaa gatagctcga
      241 ttatcacacc gccagttgac ccagataaac caattgtaat taatcctgta aaaccagtca
      301 atccagccac accaactgta ccaaacaaaa acattccaaa aaagaaaatc actaaaactg
      361 taaaccaaac agataaaaca actacagctt ccgagttacc aaaaacaggt gacagcgaaa
      421 ataatttacc attaattatc ggtgttagtt tgttaatcag cggagtttat atcttcacta
      481 caagaagaaa acgagtgaaa ta
//
LOCUS       DABQVC010000401          501 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.403,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000401 DABQVC010000000
VERSION     DABQVC010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.403"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..309)
                     /locus_tag="IBJ56_002988"
     CDS             complement(<1..309)
                     /locus_tag="IBJ56_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HAM3419213.1"
                     /translation="MSIQTIFGNGKYNWINIDTDSTDNLADFYEKYHIDDEVIAYSID
                     RNERAHFEYDQKSNTFVIVFNVPDQRKMDNHYETIPMVFIIKDKQLITITNNDNQYIT
                     R"
BASE COUNT          160 a           77 c           68 g          196 t
ORIGIN      
        1 tcgtgtaata tattgattgt cattatttgt aattgttatc aattgcttat cttttattat
       61 aaaaaccatt ggtattgtct cataatggtt atccattttc ctttgatcag gcacattaaa
      121 cacaatgaca aaagtattgg acttttgatc atattcaaaa tgcgcacgtt catttctatc
      181 aatcgaatag gcgattactt catcatcaat atgatatttt tcgtaaaaat ccgctagatt
      241 atctgtacta tctgtatcaa tattaatcca attatatttg ccgtttccaa aaattgtttg
      301 aatggacatt ttttcatcct actttccatg aggtcataaa aaaagagagt ctcattttca
      361 gagcatctct atttctacat aattatagca cagaatctgg gaaattctgt gctacaacta
      421 tcttaaagga gtgtttattt gaaataagca attaagaata tttctatggg ggaagtaatt
      481 tattttcaat tagcttattt c
//
LOCUS       DABQVC010000402          497 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.404,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000402 DABQVC010000000
VERSION     DABQVC010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.404"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            3..437
                     /locus_tag="IBJ56_002989"
     CDS             3..437
                     /locus_tag="IBJ56_002989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015454185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419214.1"
                     /translation="MFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEM
                     SVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPV
                     IGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK"
BASE COUNT          182 a           70 c          114 g          131 t
ORIGIN      
        1 tgatttttag cggagggaca gcctacgcgg cagataaaga aggaaataca gtagtggaat
       61 attctgttga aggagattat accttagttg taccagaaaa agtaaattta tctaatgata
      121 acgccacaga aatgtctgtg aaaacaatca atcgtaactt agaaccagga aaagaagtag
      181 aggtgacatt atctagtgga ttatcagccg atggagagat tgaattacaa cgggttggcg
      241 ctatttcgga cgtaataact agtagtttta agagtaataa tagtgtagta cccatggcta
      301 atcccgtcat tggaagcttt tcaggttatg cgatggagga aacagaagta agtaaaattc
      361 aaattggaaa ccctcaagga gacaaaaaag ctggagcata tcaaacaacg ttaactttta
      421 cagctgcttt taaataagaa attacgaaag gagttgtgca tttcttgaaa aggaaattag
      481 ttctggcaat ggtacta
//
LOCUS       DABQVC010000403          480 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.405,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000403 DABQVC010000000
VERSION     DABQVC010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.405"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>480
                     /locus_tag="IBJ56_002990"
     CDS             <1..>480
                     /locus_tag="IBJ56_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HAM3419215.1"
                     /translation="LEYTLLQMIAREASSGYELANRLRIMQNTHHSQIYPSLSKLEKA
                     GFLVVHKHSQDKKPDKKVYTITQTGLDSLLEWSETPLKIPVTRDEFTTKVQLDWLNNA
                     RTKGLIQERESYLKEQLGLIEETLDHFAKLFDLKTKQDKLKNMSYQVYARRLDLIHT"
BASE COUNT          183 a           92 c           75 g          130 t
ORIGIN      
        1 tcttagaata tacgttatta caaatgattg ctcgtgaagc atctagtggt tatgaactcg
       61 caaacaggct tcgaattatg caaaatacac atcatagcca aatttatcct tctttatcta
      121 agttagaaaa agcaggtttt ttagttgtcc ataagcattc ccaagataaa aagcctgata
      181 aaaaagtcta tactatcaca caaaccggct tagactccct gcttgaatgg tctgaaacac
      241 cacttaaaat ccctgtcaca cgagatgaat ttacaacaaa agtacagctt gactggctaa
      301 acaatgccag aaccaaaggg cttattcaag aaagagaaag ctatttaaaa gagcaattag
      361 gtttaattga agaaacactg gatcatttcg ctaaattatt tgacctaaaa accaaacaag
      421 acaagctaaa aaacatgtct tatcaagtct atgcaagacg attagatttg attcataccg
//
LOCUS       DABQVC010000404          475 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.406,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000404 DABQVC010000000
VERSION     DABQVC010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.406"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..406
                     /locus_tag="IBJ56_002991"
     CDS             <1..406
                     /locus_tag="IBJ56_002991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HAM3419216.1"
                     /translation="KDYEKTKKVIEYFKGEIPILGVCLGHQIIAEFFGGEIKHAPYIC
                     HGKATQIVHDNSGIFEDIQSKTNVARYHSLIISENNFPGKELKITSRTIDGLIMGVRH
                     CIYNIEGVQFHPESILTEQGFKMIQNFVLSER"
BASE COUNT          181 a           51 c           90 g          153 t
ORIGIN      
        1 aaaggattat gaaaaaacaa aaaaagttat agaatatttc aaaggtgaaa ttcctatttt
       61 aggagtttgt ttaggtcatc aaataattgc tgaatttttt ggcggagaaa taaagcatgc
      121 accttatatt tgtcatggca aagcaacaca aatagtgcat gataacagtg ggatatttga
      181 agatatacag tcgaaaacga atgttgctag atatcattcc ttgattatta gtgagaataa
      241 tttcccagga aaagaattaa aaataacttc tcggacaatt gatggtttaa taatgggagt
      301 taggcattgt atctataata ttgaaggggt tcagtttcat ccagagtcca ttctaactga
      361 acaaggattt aaaatgattc aaaattttgt tttaagtgaa aggtagttgt gaagaatata
      421 tgaacattat acttatcggg aaaaacaaag catttataga tgaattttgt actat
//
LOCUS       DABQVC010000405          475 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.407,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000405 DABQVC010000000
VERSION     DABQVC010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.407"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(74..208)
                     /gene="rpmH"
                     /locus_tag="IBJ56_002992"
     CDS             complement(74..208)
                     /gene="rpmH"
                     /locus_tag="IBJ56_002992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003397591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HAM3419217.1"
                     /translation="MKRTYQPSKRKRKKVHGFRTRMSTKNGRRVLASRRRKGRKVLSA
                     "
BASE COUNT          136 a           95 c           67 g          177 t
ORIGIN      
        1 tacatatctt agtataaggc cgtttgcctc agcgattttt caaaaaaaaa accactgagt
       61 cgttttcagt ggtctacgca gataaaactt ttcttccttt acgacgacga cttgctaaaa
      121 ctctacgtcc gtttttagta ctcatacgcg tacggaaacc atgcactttt tttcttttac
      181 gtttacttgg ttgatatgtt cttttcatta attacacctc ccatgaaagg gtccaatcga
      241 atttatctat tagacagtct tagatattgt acgtgaactg gtcttttttg tcaatactat
      301 ttagacgaat ttctatttag actccgttca ctatcatatc atatttttat agagagaaaa
      361 accatttttc gaaaattatt gtgtcaaata gatatatttt tctctcgtag tgtctggaat
      421 agtaatttcc cgaccagaaa cctctactaa atatttagca aactccccga ttttc
//
LOCUS       DABQVC010000406          472 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.408,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000406 DABQVC010000000
VERSION     DABQVC010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.408"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            175..>472
                     /locus_tag="IBJ56_002993"
     CDS             175..>472
                     /locus_tag="IBJ56_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419218.1"
                     /translation="MNITKNGLYIIIGANGVGKTTLAKKILQANRSISCMMKQDDNQI
                     LEYETVLTNISMNEIAEKTVINFLEEHQLDYLITKKSKFLSGGEKRLVNLLRAIL"
BASE COUNT          205 a           51 c           80 g          136 t
ORIGIN      
        1 acatactacg gggaatttta tggtcactat gcaggcggaa aagataaatt ttcatataaa
       61 ttagaaaaga aaaataataa aaatgtaaaa tcacaactta ttgtagattt attcgtaatt
      121 taacaataac aacaaggctc ttcattcatc tagaaaataa aaggatatat caatgtgaat
      181 ataactaaaa acggattata tataattatt ggggcaaatg gagtagggaa aacaacatta
      241 gctaagaaaa tacttcaagc taacagaagt attagttgca tgatgaagca agatgataat
      301 caaatattgg agtatgagac ggttttaacc aatattagta tgaacgaaat cgcagaaaaa
      361 acggttatta attttctgga agaacatcaa ttagactatt taataactaa aaaaagtaaa
      421 tttcttagtg ggggagaaaa aagattagtt aaccttctaa gagctatttt gt
//
LOCUS       DABQVC010000407          471 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.409,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000407 DABQVC010000000
VERSION     DABQVC010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.409"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            53..126
                     /locus_tag="IBJ56_002994"
     tRNA            53..126
                     /locus_tag="IBJ56_002994"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:87..89,aa:Thr,seq:cgt)
     gene            136..219
                     /locus_tag="IBJ56_002995"
     tRNA            136..219
                     /locus_tag="IBJ56_002995"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:170..172,aa:Tyr,seq:gta)
     gene            231..302
                     /locus_tag="IBJ56_002996"
     tRNA            231..302
                     /locus_tag="IBJ56_002996"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:263..265,aa:Gln,seq:ttg)
     gene            312..384
                     /locus_tag="IBJ56_002997"
     tRNA            312..384
                     /locus_tag="IBJ56_002997"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:345..347,aa:Lys,seq:ttt)
BASE COUNT          129 a           99 c          109 g          134 t
ORIGIN      
        1 agaattaatt atgcaagaga tttcgatttg ccagcagtga gagcgattct tcgccgactt
       61 agctcaatct ggtagagcaa ctgaatcgta atcagtaggt tgcgggttca attcctgcag
      121 tcggcatttt atagcggagg ggtagcgaag tggctaaacg cggcggactg taaatccgct
      181 ccttcgggtt cggtggttcg aatccactcc cctccaccat tttctattat tgggctatag
      241 ccaagcggta aggcaacgga ttttgattcc gtcatgcgct ggttcgaatc cagctagccc
      301 agtcatattt agagccgtta gctcagttgg tagagcatct gacttttaat cagagggtcg
      361 ctggttcgaa cccagcacgg ctcatcaaaa aaaaacaagc aaagaaaata ctttgcttgt
      421 tttttttgat gtaatttttt ctccctaaga aaaaagataa actaaaaatt a
//
LOCUS       DABQVC010000408          471 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.410,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000408 DABQVC010000000
VERSION     DABQVC010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.410"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            196..>471
                     /locus_tag="IBJ56_002998"
     CDS             196..>471
                     /locus_tag="IBJ56_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAM3419219.1"
                     /translation="MKFDDSKPIYKQIVHYIHTEIVTGIYNAGDKLLSVRELATKLEV
                     NPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTE"
BASE COUNT          178 a           66 c           94 g          133 t
ORIGIN      
        1 tgaacagttt gtgacgttat ctagattggc ttattgtata catttttaat taaaaaaatt
       61 ttttaagcaa taaaaaacgc attttagata tatgtaatgt ataaatgaag cgattttcct
      121 ttgatatagt acattcatag ccagtgtgac ccaggtggta cggtgatacg gacagacagg
      181 cgaaaggagg aaattatgaa gtttgatgat agtaaaccca tttataaaca aatcgttcat
      241 tatattcata cagaaattgt tacaggaatt tacaatgctg gtgacaagct actatctgta
      301 agagagttag caacaaagtt agaagtaaat ccgacaacca tccagcgagc ttatgcagaa
      361 ctggaagaaa cggaaattat ttacaccgtt cgaggtactg gtaaatattt gacagaagat
      421 aagaggagaa ttgagcaatt ggaaaatgac atcgcaaaac aacttaccga a
//
LOCUS       DABQVC010000409          470 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.411,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000409 DABQVC010000000
VERSION     DABQVC010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.411"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(108..>470)
                     /locus_tag="IBJ56_002999"
     CDS             complement(108..>470)
                     /locus_tag="IBJ56_002999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HAM3419220.1"
                     /translation="GITGIIAGITGIAGGGLLAALSGSEELSNATAMTAADSEALAAA
                     GGLTVIFSIIALVLGIALIVFAVLIKRNAKVFGILTLVAGVVGFFLVGLLWIVPGVLA
                     VIAGIMCLARKVPTDTFS"
BASE COUNT          173 a          104 c           70 g          123 t
ORIGIN      
        1 aattgtcagt tttactttaa aataaattta ttatcttttg agaactattt aaatcaaaaa
       61 aactgcaaca gaatgattcc tcatcctatt acagtctagc attaagatta gctaaatgtg
      121 tcagttggta cttttctcgc taggcacata atacctgcaa taacagcaag tacacctgga
      181 acgatccata gtaatcctac taagaagaaa cctacaacac cagctactag cgtcaagata
      241 ccgaatactt tagcattgcg tttaattaat acagcaaaaa caatcaaagc aataccaagc
      301 actaaagcaa ttatagagaa aattactgtt aaaccacctg cagcagcaag tgcttcagag
      361 tcagcagcag tcatcgcagt tgcgttagat aattcttcac tgccagaaag agcagcaagt
      421 aaacctccgc ccgcgattcc agtaatacca gcaataatac ctgtaattcc
//
LOCUS       DABQVC010000410          461 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.412,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000410 DABQVC010000000
VERSION     DABQVC010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.412"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(50..259)
                     /locus_tag="IBJ56_003000"
     CDS             complement(50..259)
                     /locus_tag="IBJ56_003000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014589125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419221.1"
                     /translation="MILYYSESIEKYLFGGYIFREELHARMHIWPVTRFASNGPNKNT
                     FLRLRKERALSTGKVERQLGCAPNC"
BASE COUNT          153 a          105 c           61 g          142 t
ORIGIN      
        1 tctaggttgt acccgtgatt tcacggtcaa catataagta acactccctt taacaattgg
       61 gcgcgcaacc caattgtctt tcaaccttac cagttgaaag agcacgttcc tttctgagcc
      121 ttaggaacgt gtttttgttt ggcccgttcg aagcaaagcg agttacgggc caaatatgca
      181 tgcgagcatg taattcttcc cgaaaaatat atcctccaaa caaatacttt tcaatacttt
      241 cagaataata taaaatcatt gcccgattta tatgttatat atatccatct acatactttt
      301 aacgtctgtc tattgaagaa aaacctagct ccatcaacac attcccatcg taaaacagta
      361 ctaaaaacaa ttatgtcgaa accttgaacc tcactctatt ttaagtaaat cccatcaaaa
      421 aaatcatgct taataaagat tcctcatgat attataacct t
//
LOCUS       DABQVC010000411          453 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.413,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000411 DABQVC010000000
VERSION     DABQVC010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.413"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..270)
                     /locus_tag="IBJ56_003001"
     CDS             complement(<1..270)
                     /locus_tag="IBJ56_003001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419222.1"
                     /translation="MILEIYKSWVIVLVLHELAHIFFVLLFKGKIGKVVIGNFFFLNV
                     RKVAISPIVINCSVSYEEDSNWGLGKQALILLMPAVINLTMGIWIG"
     gene            complement(251..>453)
                     /locus_tag="IBJ56_003002"
     CDS             complement(251..>453)
                     /locus_tag="IBJ56_003002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAM3419223.1"
                     /translation="KRFIYVIMILDFLLSMPACLLVSRVIIGDNIGMLMILPTLGGSA
                     IMFMLTLLLMSYRDKKNDFRNL"
BASE COUNT          167 a           96 c           56 g          134 t
ORIGIN      
        1 ccctatccat attcccattg tcaaattaat aacggcaggc atcaatagaa tgagtgcttg
       61 ctttcctaat ccccaatttg aatcttcttc ataagataca gaacagttaa tgacaatggg
      121 tgaaatagcg acttttctta cattaaggaa gaaaaagtta cctattacta ccttacctat
      181 ctttccctta aaaagtagga caaagaaaat gtgggctaat tcatgcaaaa ctaagactat
      241 aacccaactt ttataaattt ctaaaatcat tcttcttatc ccggtaactc attaatagta
      301 atgtgagcat aaacatgata gctgaacccc ccagtgtcgg aagtatcatt agcataccta
      361 tattatcccc aataataact cgacttacta acaagcacgc aggcatactc aacaaaaaat
      421 ctaatatcat tattacataa ataaaccgtt tat
//
LOCUS       DABQVC010000412          451 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.414,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000412 DABQVC010000000
VERSION     DABQVC010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.414"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            75..>451
                     /locus_tag="IBJ56_003003"
     CDS             75..>451
                     /locus_tag="IBJ56_003003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAM3419224.1"
                     /translation="MDPLKPFEERLTSDYLIILDKRIDFSIHTLPIKVTILSTISNET
                     AVFDFMRYFSSYYNLEILNQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLES
                     DYVKINDNLAKIARKKFIANKKD"
BASE COUNT          165 a           66 c           71 g          149 t
ORIGIN      
        1 atcgaaatat aagaaaaatc cataaagtga atcacctaga accattgatt agtcaattag
       61 taaatttaaa agaaatggat ccattaaaac cgtttgaaga aagacttact tcagattatc
      121 tgatcatttt ggataagcgg attgattttt ctatacacac cttgcctatt aaagtaacta
      181 ttttatcgac catatctaat gaaacagccg tatttgattt tatgaggtat ttttctagtt
      241 actacaatct ggaaatactt aatcaggtcg atccggtggt ggacttatat ataagtgatt
      301 tttccgtgtc tccagaagtg ttgacctctt tacgtatcaa tcagccaata atctatgtaa
      361 atactagatg gctagaatct gattatgtca aaattaatga taatctggcg aaaatagcga
      421 gaaaaaaatt tattgctaat aaaaaagatt a
//
LOCUS       DABQVC010000413          450 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.415,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000413 DABQVC010000000
VERSION     DABQVC010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.415"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..>450)
                     /locus_tag="IBJ56_003004"
     CDS             complement(<1..>450)
                     /locus_tag="IBJ56_003004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="HAM3419225.1"
                     /translation="LLFNVLLFIFILFPMYFFGLLRIKKIDQAKSDQRMQSSRQHLAI
                     NLVIKFVLLCLFIGTFIASYQSLQTLNTRLANIDVWEATKDIFKVKVGVLPEGIQDNL
                     KADKELNNNLSAFYEEGTSKKEMFLMYSNNFQRSETNTFFYETYLKK"
BASE COUNT          163 a           73 c           57 g          157 t
ORIGIN      
        1 cctttttcaa ataagtttca tagaaaaaag tattagtttc acttcgctga aaattattcg
       61 aatacattaa aaacatctct ttcttagatg taccttcttc ataaaaagca cttaaattgt
      121 tgtttagctc tttatcagct tttaagttat cttgaatccc ctcaggtaaa acccctactt
      181 ttactttaaa aatgtccttt gtagcttccc atacatcaat attagctagt cttgtattta
      241 atgtctgaag tgattgataa gaagcaataa aagtacctat aaataagcag agcagcacaa
      301 atttaataac tagattgatt gccaaatgct gtcttgatga ttgcatacgc tggtctgatt
      361 ttgcttgatc aattttcttt attctaagta atccaaagaa atacattgga aacagaataa
      421 aaataaataa aagtacatta aataaaagca
//
LOCUS       DABQVC010000414          441 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.416,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000414 DABQVC010000000
VERSION     DABQVC010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.416"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..>441)
                     /locus_tag="IBJ56_003005"
     CDS             complement(<1..>441)
                     /locus_tag="IBJ56_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HAM3419226.1"
                     /translation="LDKYREQYPELTIIEDTKMENTHKGLYYNKHIFVNPNQNDVEMR
                     CTLAEEVGHHHLTVGNIIKQETVNDRKQERLARNWGYESLIPLRKIIDAYYEGFTEYY
                     EVAEFLEMTEDFLKHSIEYYKNKYGNTVECNGYVIIFRSSIQII"
BASE COUNT          135 a           84 c           49 g          173 t
ORIGIN      
        1 caataatttg aatactgctt ctaaaaataa ttacataacc attacattcc acagtatttc
       61 catatttatt cttatagtat tcaatagaat gttttaaaaa atcttctgtc atctctaaaa
      121 actcagcgac ttcatagtat tctgtaaatc cttcataata agcatcgata atttttcgta
      181 aaggtatcag tgattcataa ccccaattcc ttgctaatct ttcttgtttt ctatcattaa
      241 ctgtttcctg tttaataata ttaccaacag tcaaatgatg atgaccaact tcctctgcca
      301 aagtgcaacg catttcgaca tcattctgat ttggatttac aaaaatatgt ttattgtaat
      361 acagcccctt gtgagtattt tccatttttg tgtcttctat gatggttaat tcaggatatt
      421 gctctctgta tttatctaac c
//
LOCUS       DABQVC010000415          422 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.417,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000415 DABQVC010000000
VERSION     DABQVC010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.417"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            108..419
                     /locus_tag="IBJ56_003006"
     CDS             108..419
                     /locus_tag="IBJ56_003006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419227.1"
                     /translation="MNISNQIKENLEQRRSIHEEDDFGLERNWAELTNILSMSEDETI
                     NYLKNCSKEDVLLISSVFDDVSEKIQSRKFISCLRELDKKIPDLKLTFFIDDAEGYIE
                     N"
BASE COUNT          181 a           41 c           67 g          133 t
ORIGIN      
        1 ccccgcaaaa aaattactcg tagataatga gttaaaaaaa tatcaagaat tatattcaat
       61 atagatatct taattacata aaataaatat gtaaatggga ggacattatg aatatatcta
      121 atcaaattaa agagaattta gaacaacgaa gaagcataca tgaagaagat gactttggac
      181 ttgaaagaaa ttgggcagaa ctaaccaata ttttatctat gagcgaagat gaaactatca
      241 attatttaaa gaattgttca aaggaagatg tattgttaat tagttcggtt tttgatgatg
      301 tttccgaaaa aatacaaagc aggaaattta tttcttgttt aagagaacta gataaaaaaa
      361 ttcctgattt gaaattaaca ttttttattg atgatgctga aggttacatt gaaaattaaa
      421 ta
//
LOCUS       DABQVC010000416          418 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.418,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000416 DABQVC010000000
VERSION     DABQVC010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.418"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..>418)
                     /locus_tag="IBJ56_003007"
     CDS             complement(<1..>418)
                     /locus_tag="IBJ56_003007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HAM3419228.1"
                     /translation="YVYACGVIKYTIFPLMLNAFLIEDTKIFVTGPYMNLIPFNSISE
                     MFIAERESAAFQIVANIIMFVPLGMLLPLCYPKLRWKSVFAISFIATVGIELAQLLQD
                     LIYQSPFKFVDIDDVILNFSGSIIGYMIFVMFRPLLR"
BASE COUNT          170 a           71 c           54 g          123 t
ORIGIN      
        1 ccttaacaaa ggcctaaaca taacaaaaat catatatcca ataatactcc cagaaaagtt
       61 cagtattaca tcatcaatat cgacaaactt aaagggcgat tgataaataa gatcctgtaa
      121 taattgagca agttcaatcc cgacggttgc tataaaactt atagcaaaaa cacttttcca
      181 tcttaatttt ggataacata atggtaaaag cattccaagg ggaacaaaca taataatatt
      241 tgcaactatt tgaaaagcag cggattctct ttctgcaata aacatttcac ttattgaatt
      301 aaaaggaatt aaattcatat aagggcctgt tacaaatatt tttgtatctt ctatcaagaa
      361 agcatttaac ataaggggaa aaattgtata cttgattaca ccacaagcat atacatat
//
LOCUS       DABQVC010000417          417 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.419,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000417 DABQVC010000000
VERSION     DABQVC010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.419"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>417
                     /locus_tag="IBJ56_003008"
     CDS             <1..>417
                     /locus_tag="IBJ56_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HAM3419229.1"
                     /translation="SKDELKEAFTDALIMKNEKTVDEDRLEWEYMAEEFLSGYEMSSE
                     YLVKDGKIVFKNITYKEGIDNQECIEIAHHIPAIKNVEVEKEMYNQINKLIEKANIGT
                     TVLHAEWKVEKNIPVLIECAARMPGDYISNGISSSY"
BASE COUNT          167 a           42 c           85 g          123 t
ORIGIN      
        1 caagtaaaga tgaactaaaa gaagctttta cagatgcgtt aattatgaaa aacgaaaaaa
       61 ctgtagatga agatagactg gaatgggaat atatggctga agaattttta tctggttatg
      121 agatgagttc cgaatacttg gttaaagatg gtaaaatagt ttttaaaaat ataacttata
      181 aagaaggaat tgataatcaa gagtgtattg aaatagctca tcatatacca gcgatcaaaa
      241 atgttgaggt agagaaggag atgtataatc aaattaacaa acttatagag aaagcaaata
      301 tagggactac tgttcttcat gctgaatgga aagttgaaaa aaatattcct gttttaattg
      361 aatgtgctgc tcgaatgcca ggcgattata tatcgaatgg tataagttca tcttata
//
LOCUS       DABQVC010000418          417 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.420,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000418 DABQVC010000000
VERSION     DABQVC010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.420"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
BASE COUNT          151 a           69 c           64 g          133 t
ORIGIN      
        1 cttattacca attccttact tacaaaccga tggctatctt atgtttaagg agatacaaaa
       61 aagagctgtt ttcaaaaaaa attaagtttt tttatacgtt agtaagataa gtaacgtaat
      121 ttgttgcttg tcttttttta tcgaatcaga ataaactgtt gcttccaaca aaaaaacaat
      181 ccacacggca ctgaacaaaa atattcaatt aatcgtcaca tctttcgcac agaagggtct
      241 aatgcgggaa aaagtggtag gaatcttctg ttataattat tcaccaaagg ctagtaatgt
      301 tttatgctaa accatccaaa ataatgcagc gctgaggtgt attcgacacc ggattatata
      361 ctcagtcaaa ttataagaag gcaaaaaagt aatccctttt tttgttaagt aaatcta
//
LOCUS       DABQVC010000419          411 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.421,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000419 DABQVC010000000
VERSION     DABQVC010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.421"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>411
                     /locus_tag="IBJ56_003009"
     CDS             <1..>411
                     /locus_tag="IBJ56_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HAM3419230.1"
                     /translation="GRIKAQLHDASYKLTPQREATVRVLLENEKDHLSAEEVFLRVKD
                     IAPDTGLATVYRTLELLTELRVVDKINFGDGVSRYDLRQEGAKHFHHHLVCLECGSVE
                     EIQEDLLEDVEKIVESKWNFLVKDHRLTFQGICA"
BASE COUNT          127 a           67 c           94 g          123 t
ORIGIN      
        1 tggacgcatt aaagcacaac ttcatgatgc tagttataaa ttaaccccac agcgagaagc
       61 tactgttcgc gttttactgg aaaatgaaaa agatcattta agtgccgagg aagttttctt
      121 gcgtgtgaaa gatattgcac ctgacactgg ccttgcaacc gtttatagaa cgttggaact
      181 tttaaccgaa ttacgcgtgg ttgataaaat taattttggt gacggtgttt ctcggtatga
      241 cttgagacaa gaaggcgcca aacatttcca tcatcattta gtatgtttag agtgtggttc
      301 tgtagaagaa attcaagaag atttattaga agatgtggag aaaatcgtcg aatcgaagtg
      361 gaattttctt gttaaagacc atcgactgac tttccaaggg atttgcgcag a
//
LOCUS       DABQVC010000420          410 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.422,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000420 DABQVC010000000
VERSION     DABQVC010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.422"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..409
                     /locus_tag="IBJ56_003010"
     CDS             <1..409
                     /locus_tag="IBJ56_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419231.1"
                     /translation="KEVEKIFKGYEQNYQLKLTKINNNEVAFIGEDYALGIGWSADGI
                     DLHYFKLNNSVLCKFSLDNLLNRKLTQIEREGLLPSETIYKKIINELIICERVFNNHF
                     QELLRGETLSDYGNKEFVSNLEKSIIERELLTR"
BASE COUNT          165 a           43 c           80 g          122 t
ORIGIN      
        1 caaagaagtt gaaaaaatat tcaaaggata tgagcaaaat tatcaattga agctaactaa
       61 aataaataat aatgaagttg ctttcatcgg agaagattat gctttaggta taggatggag
      121 cgcggacggg atagatttgc attatttcaa actaaataat tcggtgctct gtaaatttag
      181 tttggataat ttattgaata gaaagctaac tcaaatcgaa agagaagggt tacttccaag
      241 tgaaacaatt tacaagaaaa taattaatga attaataatc tgcgaaagag tattcaataa
      301 tcattttcaa gaattgctac ggggtgaaac attaagcgac tatggaaata aagaatttgt
      361 ttcgaatttg gagaagagta ttattgaacg tgaactattg actcgataat
//
LOCUS       DABQVC010000421          402 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.423,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000421 DABQVC010000000
VERSION     DABQVC010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.423"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..251
                     /locus_tag="IBJ56_003011"
     CDS             <1..251
                     /locus_tag="IBJ56_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3419232.1"
                     /translation="LSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKD
                     NKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE"
     gene            327..>402
                     /locus_tag="IBJ56_003012"
     CDS             327..>402
                     /locus_tag="IBJ56_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAM3419233.1"
                     /translation="MARIEYGEEIQKSLLVLYSRGSTIQ"
BASE COUNT          145 a           63 c           88 g          106 t
ORIGIN      
        1 tcttatcgcc tgaacgagtt caagctagtc aaacagtggt tgaggtgttc atttcagagg
       61 acgatttgga tgtcagtgaa gaaaacatac aggagattcc taaaaaagaa ctggcagcct
      121 cttcagataa ggataacaaa caacccatat tacctaaagc aggtgataca gtaactaact
      181 ataccttatt gggtttagtg ctcgtcctta tttggttgat aatgcaaaga aaaaggaaga
      241 agaaggaata accccctgtg acatcatcat aatgtagtaa gtaaaaagga tataaaaatt
      301 tctgtgttag ataggaagtg acaggtatgg ctcgaattga atatggagaa gaaattcaaa
      361 aaagcctact ggttttatac tctagggggt ctaccataca gt
//
LOCUS       DABQVC010000422          400 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.424,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000422 DABQVC010000000
VERSION     DABQVC010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.424"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..281
                     /locus_tag="IBJ56_003013"
     CDS             <1..281
                     /locus_tag="IBJ56_003013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419234.1"
                     /translation="EINENEETQGKHLEVVVKDKISKKQSDEIVNKVIDKYKSKVDAL
                     YVNMHYTEGAYSAILNARHSYNKNGVKITGLKVGETEIEMNKNFNKDR"
BASE COUNT          174 a           65 c           66 g           95 t
ORIGIN      
        1 atgagattaa tgaaaatgaa gaaacgcaag gtaaacactt agaggttgtt gtaaaagata
       61 aaatctcaaa aaaacaatct gacgaaatag ttaataaagt aatcgacaaa tacaaaagca
      121 aagtagatgc actttatgta aacatgcatt acacagaggg cgcctactca gctatattaa
      181 atgctcgtca ctcttacaat aaaaatggag tcaaaataac tggtttaaaa gtaggtgaga
      241 cagaaattga aatgaacaaa aattttaaca aagatagata acaaaaaaac gcccttcccc
      301 gcacaggata agcgtcttaa atacacgcgt aggagcgtgc aaatttattt taccataatt
      361 tgttgcgccc ttcaaaagaa catatgttcc aaaaataaac
//
LOCUS       DABQVC010000423          400 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.425,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000423 DABQVC010000000
VERSION     DABQVC010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.425"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..259)
                     /locus_tag="IBJ56_003014"
     CDS             complement(<1..259)
                     /locus_tag="IBJ56_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419235.1"
                     /translation="MNRKMRLLKGLMAFIVGVSIIATPIITVYAASNKVAISMNRRAV
                     NGATNGKYHSLNKGTVKLKVSAKGFGNSNSNSWVTLHKEKFG"
BASE COUNT          116 a           77 c           65 g          142 t
ORIGIN      
        1 ttccaaattt ctctttgtgc aaagttaccc acgagttgga gttactattc ccgaaacctt
       61 tagccgaaac tttcaattta accgttcctt tgttcaatga atgatatttt ccatttgtag
      121 caccatttac agctcgacgg ttcatcgaaa tggctacttt attacttgct gcgtagactg
      181 taataattgg ggttgctata atgcttacac ctacaatgaa agccattagt ccttttaata
      241 atctcatctt tctgttcatc ttgttgcctc ctttttgtaa tcaatagttg caatgcaaga
      301 gtatcataaa aaagcgatgt ataaccaaaa atgtaatgaa atgtccgatt cttgtcgtga
      361 acgactagaa aatggagctt atttggagat atttttacac
//
LOCUS       DABQVC010000424          391 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.426,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000424 DABQVC010000000
VERSION     DABQVC010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.426"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            173..>391
                     /locus_tag="IBJ56_003015"
     CDS             173..>391
                     /locus_tag="IBJ56_003015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin"
                     /protein_id="HAM3419236.1"
                     /translation="MSVKSNIVKIGVCFAVLAVPVSQTTFPVFAAEQTGLKASQDNVN
                     IPDSTFKAYLNGLLGQSSTANITEAQMNS"
BASE COUNT          140 a           64 c           67 g          120 t
ORIGIN      
        1 atagaaaaat cctaaaaaga tactaaattt tgctttttca accatttttg tacacatttt
       61 gtctattggt ctcatatgct gaggagacta taattacatc ataaagtttc ttttaaggat
      121 acctcttaaa atttactagg cgaatataac agagtggaga tggtaataac ttatgtcagt
      181 aaaatcaaat atcgtaaaaa ttggggtatg ctttgcagta ctcgctgtcc ccgtatcgca
      241 aacaacattc ccggtatttg ctgcagagca aactggatta aaagcaagtc aggataatgt
      301 gaacattcca gattcaacat ttaaagcgta cttaaatgga ttattaggac aatcgagtac
      361 agcgaatatt actgaagcac aaatgaattc a
//
LOCUS       DABQVC010000425          388 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.427,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000425 DABQVC010000000
VERSION     DABQVC010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.427"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            8..289
                     /locus_tag="IBJ56_003016"
     CDS             8..289
                     /locus_tag="IBJ56_003016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HAM3419237.1"
                     /translation="MVLISFCGMFFLSPDRVQASQTVVEVFISEDDLDVSEENIQEIP
                     KKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE"
BASE COUNT          134 a           61 c           88 g          105 t
ORIGIN      
        1 tctggcaatg gtactaatca gcttttgtgg gatgttcttc ttatcgcctg accgtgttca
       61 agctagtcag acagtggttg aggtgttcat ttcagaggat gatttggatg tcagtgaaga
      121 aaacatacag gaaatcccta aaaaagaact ggcagcctct tcagataagg ataacaaaca
      181 acccatatta cctaaagcag gtgatacagt aactaactat accttgttgg gcttagtgct
      241 cgtccttatt tggttgataa tgcaaagaaa aaggaagaag aaagaataac cccctgtgac
      301 atcatcgtaa tgtagtaagt aaaaagggaa taaaaatttc tgtattagat aggaagtgat
      361 aggtatggct cgaatcgaat atgaagaa
//
LOCUS       DABQVC010000426          386 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.428,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000426 DABQVC010000000
VERSION     DABQVC010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.428"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            125..>386
                     /locus_tag="IBJ56_003017"
     CDS             125..>386
                     /locus_tag="IBJ56_003017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419238.1"
                     /translation="MGNQKQSIDYFEVKGIAKFRNKLHKAYKDLTFPGLDFPYCVPDK
                     KYSYLYFPLDAFENTKEGNRILSVLLLDKEKDIYFHSDVFGMF"
BASE COUNT          138 a           51 c           65 g          132 t
ORIGIN      
        1 aatatacgag ccaaattgtt atccattttc ccattattag tcgttttatc agattcaagt
       61 gagttgatgg cgtattcaat ggaaaaatcg aatttagagc tgatataaat tcaggaggga
      121 taaagtggga aatcaaaaac aatctattga ttactttgaa gttaaaggga ttgctaaatt
      181 tcgaaataag ttacataaag cctataaaga tttaactttt ccagggctag acttccccta
      241 ttgtgtacct gacaaaaaat atagctattt atatttccca ttagatgcat ttgaaaatac
      301 gaaagaaggc aatcgaattt tatccgtact tttgttagat aaagaaaaag atatatattt
      361 tcactcagat gtttttggaa tgtttt
//
LOCUS       DABQVC010000427          378 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.429,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000427 DABQVC010000000
VERSION     DABQVC010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.429"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>378
                     /locus_tag="IBJ56_003018"
     CDS             <1..>378
                     /locus_tag="IBJ56_003018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3419239.1"
                     /translation="NLNYINKMDIISLLKDEYSQFANAPFNIRVESDTAELYQVDRVR
                     FWKDVNRDVDLQIYVKDYYRTRLLQSIKKMQQMLMNGKLGAICTQLYELYTLFGVEIA
                     PDQYLIDFLVSNEEIGHFCGINSA"
BASE COUNT          123 a           57 c           81 g          117 t
ORIGIN      
        1 aatttaaact acattaataa aatggacatt atctcacttt taaaagatga gtattcgcag
       61 tttgccaatg cgccgtttaa cattcgtgtg gagtcagaca cagcagaact atatcaagtt
      121 gaccgggtaa ggttttggaa agacgtgaat cgtgatgtgg atttgcaaat ttatgtgaaa
      181 gattattacc gtacgaggct gctacaatcc ataaaaaaaa tgcagcaaat gctaatgaat
      241 gggaaacttg gagcaatttg tacgcaactc tatgaacttt atacgctttt tggagtggaa
      301 attgcgcctg atcagtattt gattgatttt ctagtaagta atgaagaaat tggtcatttt
      361 tgcgggatta actccgca
//
LOCUS       DABQVC010000428          371 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.430,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000428 DABQVC010000000
VERSION     DABQVC010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.430"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..>371)
                     /locus_tag="IBJ56_003019"
     CDS             complement(<1..>371)
                     /locus_tag="IBJ56_003019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HAM3419240.1"
                     /translation="IETITAYEFDKEDIICSIIGMQEGWLYLYLNNRNHENVLIEKCN
                     LMRGNGENRLKESLEQLGRYFGNEKEGVLRIPKCFTKKIIANYSNLSVRSVTHLCRKL
                     VESGFLAENSKSFVLLDKYGR"
BASE COUNT          121 a           78 c           42 g          130 t
ORIGIN      
        1 attcttccgt atttatccaa caaaacaaaa gacttagaat tttctgctaa aaaacctgat
       61 tcaaccaact ttctacaaag atgagttact gaacgcaccg ataagttaga ataattagca
      121 ataattttct ttgtgaaaca ttttggaatg cgtagcacgc cttccttttc atttccaaaa
      181 tatcttccca gctgctctag agactctttc aaacgatttt ctccattacc acgcattaaa
      241 ttacattttt caattaaaac attttcgtga tttcgattat taagatataa atagagccac
      301 ccctcttgca tcccaataat cgagcaaatt atatcttctt tatcaaattc gtatgctgta
      361 attgtttcga t
//
LOCUS       DABQVC010000429          366 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.431,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000429 DABQVC010000000
VERSION     DABQVC010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.431"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            complement(<1..>366)
                     /locus_tag="IBJ56_003020"
     CDS             complement(<1..>366)
                     /locus_tag="IBJ56_003020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419241.1"
                     /translation="KKNQSYEADSFSFNKESSKARIIKIKPRRTYFLYIFYLICMMIF
                     AIFLVILLKTNAEETSPSNEKGTYQLATIYSTNASSYDNNEAINTMLIQSATKFNKAK
                     FFTEETRINEDEYYEEAIN"
BASE COUNT          113 a           53 c           55 g          145 t
ORIGIN      
        1 aattaatcgc ttcttcataa tactcgtctt cattaatgcg tgtttcttct gtgaagaact
       61 tagctttatt aaatttagtt gctgattgta taagcatcgt attaattgct tcattattgt
      121 cataagaaga agcattagtg ctgtatattg tagcaagttg atatgtacct ttttcgttag
      181 aaggacttgt ttcttcagca tttgttttca gtaaaatcac taaaaaaata gcgaaaatca
      241 tcatacaaat taaatagaag atatataaga aataggtcct tctaggttta attttgataa
      301 tgcgcgcttt cgaactttct ttattaaagc tgaaactatc tgcttcgtaa ctttgattct
      361 tcttta
//
LOCUS       DABQVC010000430          365 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.432,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000430 DABQVC010000000
VERSION     DABQVC010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.432"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>365
                     /locus_tag="IBJ56_003021"
     CDS             <1..>365
                     /locus_tag="IBJ56_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HAM3419242.1"
                     /translation="NDLAQIEAITELSWNSWGQLKKAIESIDFKRIPTLKNKSDYDEE
                     YVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKMKPDIKTLSRLVKKFAENFFE
                     EKQQRGVLDFNDLEHLALK"
BASE COUNT          162 a           39 c           70 g           94 t
ORIGIN      
        1 aaatgattta gctcaaattg aagcaataac agaattgagc tggaatagct ggggacagct
       61 gaaaaaggct attgaaagta ttgattttaa gcgtattcca acactaaaaa ataaaagtga
      121 ttacgatgaa gaatatgtag aggaagcaaa gaaatttcga gatgcagcaa aaaaagaaat
      181 taaaaatatc gcaactgatt ggttttcacg agaagaaata aattatttat ctgacttaga
      241 aaaaatgaaa ccagacatca aaaccttgag tagattagtg aaaaaatttg ctgaaaattt
      301 ctttgaagaa aaacagcaaa gaggagtatt ggattttaat gatttagaac acttagcatt
      361 aaaga
//
LOCUS       DABQVC010000431          360 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.433,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000431 DABQVC010000000
VERSION     DABQVC010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.433"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..323
                     /locus_tag="IBJ56_003022"
     CDS             <1..323
                     /locus_tag="IBJ56_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HAM3419243.1"
                     /translation="KYREGTVIQWRIHFFFLPCIKLNIKRIIPKWHYIFSLILPFVII
                     TTILIVLMLLTPIGHSGMFLILLSVHFGMSFSDFTHIKKLWKMPKNCFIESAERGFSV
                     LISD"
BASE COUNT          108 a           60 c           49 g          143 t
ORIGIN      
        1 ttaaataccg tgaaggaact gttattcagt ggcgtattca cttctttttc cttccttgta
       61 ttaaattaaa tattaagcga ataataccaa aatggcatta cattttttcg ttaattctac
      121 catttgtgat tataactact attttaatcg tgttaatgct tttaacgccc atcggacatt
      181 caggtatgtt cctgatatta ctatctgtcc actttggaat gagcttttct gattttacac
      241 atattaaaaa attatggaaa atgccgaaga attgctttat cgaaagtgca gaacgcggat
      301 tttctgtttt aatttctgac taaaccataa gaatatcatt aaatttcttt catcttttct
//
LOCUS       DABQVC010000432          359 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.434,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000432 DABQVC010000000
VERSION     DABQVC010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.434"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            12..>359
                     /gene="ssb"
                     /locus_tag="IBJ56_003023"
     CDS             12..>359
                     /gene="ssb"
                     /locus_tag="IBJ56_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAM3419244.1"
                     /translation="MINQVTLVGRLTKEPELKWTAEDRAVLNLTLALNRFGKNKRVDN
                     DADFIQCVIWGKRAEATAEFCAKGQLVGVVGELQSRNYLNKEEQKIYITEVLVHQIRY
                     LSSRNKDERVVNIP"
BASE COUNT          130 a           41 c           82 g          106 t
ORIGIN      
        1 gaggcgatta tatgattaat caagtaactt tagtaggcag attaactaag gaaccagaat
       61 tgaaatggac cgcggaagac agggctgttt tgaatttaac cttggcttta aatcggtttg
      121 gtaaaaataa aagagttgat aatgatgctg actttattca atgtgttatt tggggtaaaa
      181 gagcagaggc cactgcagag ttctgtgcta aaggacaatt agtaggagta gttggcgaac
      241 tacaatctcg gaattattta aataaagaag aacagaaaat ttatattacg gaagttttag
      301 ttcatcagat tcggtattta tcaagtcgaa ataaagatga aagagtagtt aatatacct
//
LOCUS       DABQVC010000433          352 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.435,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000433 DABQVC010000000
VERSION     DABQVC010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.435"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>352
                     /locus_tag="IBJ56_003024"
     CDS             <1..>352
                     /locus_tag="IBJ56_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419245.1"
                     /translation="NIKAVMMEALRGDLKLNAETEFISNDENYYKNSDSPSFHVPKSL
                     TLTEIKKAKIKQLGFELHYSNTLQSNQVEIEFNPSVYAQILKKVNQQDVLITEAYVQL
                     KAQESFYDFLAENKL"
BASE COUNT          145 a           46 c           56 g          105 t
ORIGIN      
        1 tcaatattaa agctgtaatg atggaagctt tacgtggaga tttaaagttg aacgcagaga
       61 cagaattcat tagtaatgac gaaaattact ataaaaatag tgatagtcca tctttccacg
      121 tgcctaaaag tttaacttta acagaaatta aaaaagctaa aattaagcag ctaggatttg
      181 aacttcatta tagtaatact ttgcaatcaa atcaggtaga aatagaattt aatcctagcg
      241 tgtatgcgca aattttgaaa aaagtaaatc aacaagatgt tttaattaca gaagcatacg
      301 tgcaattaaa agctcaagaa tcattttatg atttcttagc agaaaataaa ct
//
LOCUS       DABQVC010000434          351 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.436,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000434 DABQVC010000000
VERSION     DABQVC010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.436"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>351
                     /locus_tag="IBJ56_003025"
     CDS             <1..>351
                     /locus_tag="IBJ56_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HAM3419246.1"
                     /translation="ANLPKVRAVRLERNSINQIELNNLVSVKDVNLNTNKITNDSIEK
                     FKGMPILATLNLNKNQITNINMLDDFPEMTTLNIDLNSVSVLPSNLKTKMPKLSRISA
                     LNQTVTLDKAIVVD"
BASE COUNT          148 a           53 c           49 g          101 t
ORIGIN      
        1 ttgctaacct tccaaaagta agagcagttc gattggaacg taatagcatc aatcagattg
       61 aactaaataa tttagtttca gtaaaagacg tgaatctaaa tactaacaaa ataacaaatg
      121 atagtataga gaaatttaaa ggcatgccta tactagcaac tttaaattta aacaaaaacc
      181 aaattaccaa tataaatatg cttgatgatt tcccagaaat gactacttta aatattgatt
      241 taaactccgt cagtgtttta ccaagtaacc ttaaaacaaa gatgccaaaa ctatcgagaa
      301 ttagtgcatt aaatcaaaca gttactttag ataaagcaat tgtagtggat g
//
LOCUS       DABQVC010000435          351 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.437,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000435 DABQVC010000000
VERSION     DABQVC010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.437"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>351
                     /locus_tag="IBJ56_003026"
     CDS             <1..>351
                     /locus_tag="IBJ56_003026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419247.1"
                     /translation="SQGALSLVNSSVDLEEITINTFQGYSYVVRGFQEKSLEKFKSVG
                     QELLKKGLVNDLNKDNLFILSLSMINPREEEMEINWSEINFSRIFDIILQNELEFAFE
                     SQWIENIILKDEDG"
BASE COUNT          125 a           39 c           66 g          121 t
ORIGIN      
        1 tttcacaagg tgctttatca ttagtgaaca gttctgtaga cttagaagaa attactatta
       61 ataccttcca aggctattct tatgttgttc gtggatttca agaaaaaagt ttggaaaaat
      121 ttaaatctgt aggtcaagag ttattaaaaa aagggcttgt aaatgacttg aataaagata
      181 atctatttat tctctctcta tccatgataa atccgaggga ggaagaaatg gagattaatt
      241 ggagtgaaat taatttttca aggatttttg atatcattct tcaaaatgaa cttgagttcg
      301 cttttgagtc acaatggatt gaaaatataa ttttaaagga tgaagatgga c
//
LOCUS       DABQVC010000436          350 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.denovo.438,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000436 DABQVC010000000
VERSION     DABQVC010000436.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.denovo.438"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..>350
                     /locus_tag="IBJ56_003027"
     CDS             <1..>350
                     /locus_tag="IBJ56_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419248.1"
                     /translation="LLSLLNKNDEVSKKVKQIILEKGLLLYPIYDKLFVEILVNNTYC
                     TELRNESLNIFLEKFSLKSFSWEEKKFFEALIDKEEFENLAFEKLLKVNVNELNYDYV
                     FVDKTRPELLEVND"
BASE COUNT          141 a           31 c           60 g          118 t
ORIGIN      
        1 ttattaagct tgttgaataa aaatgatgaa gtatcaaaaa aagtaaaaca gataattctt
       61 gaaaaaggat tacttttgta tccaatatat gacaaacttt tcgttgagat tttagtaaat
      121 aatacctatt gtactgaatt aagaaatgaa tctctgaata tcttcttaga gaagttcagt
      181 ttgaagagtt ttagttggga agagaagaaa tttttcgaag cattaattga taaagaagaa
      241 tttgagaacc tagcttttga aaagctacta aaagtaaatg ttaatgagtt gaactatgat
      301 tatgtttttg tagataaaac aagaccagaa ttactagaag tcaatgattt
//
LOCUS       DABQVC010000437         3013 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.guided.251,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000437 DABQVC010000000
VERSION     DABQVC010000437.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.guided.251"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            154..534
                     /locus_tag="IBJ56_003028"
     CDS             154..534
                     /locus_tag="IBJ56_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HAM3419249.1"
                     /translation="MTKPLKLVYTENGFDTGSFLIDDKLTEYSPADLMLMSIASCSAI
                     VFRNILKKKRVNFTDLWVDATMERIPEEENRISAIHLHFKITGAALDPKALEKALKLT
                     PKYCSMVRSVEKSILVDESLEIMP"
     gene            599..1978
                     /gene="rlmD"
                     /locus_tag="IBJ56_003029"
     CDS             599..1978
                     /gene="rlmD"
                     /locus_tag="IBJ56_003029"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HAM3419250.1"
                     /translation="MNQNPVEEGQKFPLTIRRMGINGEGIGYFKKAVVFVPGAITGEE
                     VVVEAVKVRDRFTEAKLNKIRKKSPNRVTAPCPVYEACGGCQLQHVAYSAQLELKRDI
                     VIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMVGSGQVETGLFGANSHQL
                     VPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTIVVRTGVKTGETQLV
                     FITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKL
                     MELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAGKVK
                     EVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNEGFRPDAVIVDPPRS
                     GCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKKYRIRYMQPVDMFPQTAHVET
                     VVLLQLKDK"
     gene            1993..2394
                     /locus_tag="IBJ56_003030"
     CDS             1993..2394
                     /locus_tag="IBJ56_003030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosfomycin resistance thiol transferase FosX"
                     /protein_id="HAM3419251.1"
                     /translation="MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKE
                     KFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQG
                     EGRSIYFYDFDNHLFELHAGTLEERLKRYHE"
     gene            2423..2776
                     /locus_tag="IBJ56_003031"
     CDS             2423..2776
                     /locus_tag="IBJ56_003031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419252.1"
                     /translation="MKKLFDETNEFEAKYYRNIWYGYIDNEFAPELSDEIKQLIQSDL
                     TEKTANPIEATHWVFYSETQAGDAIGDKVRSSIMVRHRDNKFVVHYNVSDFQFVTVFD
                     VATAFKDQLEQALNA"
     gene            complement(2816..3013)
                     /locus_tag="IBJ56_003032"
     CDS             complement(2816..3013)
                     /locus_tag="IBJ56_003032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAM3419253.1"
                     /translation="MGKHPSGRAIIIRLNNQEYHYETANSFGSATSLTRAKTEARADS
                     FTSSEMNQGLHIGNWHWKELG"
BASE COUNT         1022 a          581 c          591 g          819 t
ORIGIN      
        1 ccaatcattc ctgctaaaac aatcacttta tttcctactc cttccataac atgagtagcc
       61 tccttttttg gtcgactatc tgttcattat actactaatt tgcttaataa ggagattttt
      121 tgtacgataa aagagaagaa atgagggata accatgacaa aaccattaaa gctagtttat
      181 accgaaaatg ggtttgacac aggaagtttt ttaatcgatg acaaactgac cgaatattca
      241 ccagcggatt tgatgttaat gtctattgcc agttgtagcg ccattgtttt tcggaacatt
      301 ttaaagaaaa aacgagtaaa ctttaccgac ttatgggtag acgccacaat ggaacgcatc
      361 ccagaagaag aaaatcgtat aagcgcgata catcttcatt ttaaaataac cggtgctgcc
      421 ttggatccaa aagcacttga aaaagcatta aaattaacac cgaaatactg ttcgatggtt
      481 cgttctgtcg aaaaaagcat ccttgtcgat gaaagtcttg aaatcatgcc ataaactact
      541 gacaagctgc tgtttttttg ttagtattaa tgaagacttg gaatgatgga ggaaaataat
      601 gaatcaaaat ccagtagaag aaggacaaaa attcccgcta actattcgac gcatgggaat
      661 caacggggaa gggatcggct actttaaaaa agcagttgta tttgtacctg gcgcaattac
      721 cggtgaagaa gtagttgtcg aagcggtcaa agttcgcgat cgtttcaccg aagcaaaatt
      781 aaataaaatt cgtaaaaaat ctccaaaccg agttaccgca ccttgcccag tttacgaggc
      841 gtgtggtggt tgccagttgc aacatgtggc ctatagcgcc caacttgaac taaaaagaga
      901 tattgttatt caatcaatcg aaaaacatac aaaaatcgat ccaaccaaat taaaaatccg
      961 cccaacaatc ggaatggaag acccatggcg ttaccgtaat aaaagccaat tccaaacaag
     1021 aatggtaggc agtggtcaag tcgaaacagg ccttttcggt gccaattctc accaacttgt
     1081 tccaattgaa gattgtatcg tccaacaacc cgttaccatc aaagtaacga attttgttcg
     1141 cgacttacta gaaaaatacg gcgtgccaat ttatgatgaa aaagctggca gtggtatcgt
     1201 ccgaactatc gtcgttcgta ctggcgtgaa aaccggcgaa acacagctcg tcttcattac
     1261 aaatagtaaa aagttaccta aaaaacgcga aatgcttgca gaaatcgaag cagctcttcc
     1321 ggaagtcact tcgattatgc aaaacgtgaa tcaagcaaaa tcctcactta ttttcggtga
     1381 cgaaacgttc cttttagcag ggaaagaaag cattgaagag aaattaatgg aactagaatt
     1441 cgatctatct gctcgtgcct ttttccaatt aaacccgttc caaacagagc gactttatca
     1501 agaagtcgaa aaagcactcg tactaacagg cagtgaaaca ctagtagatg cttattgcgg
     1561 tgttggaaca atcggccaag cttttgccgg aaaagtaaaa gaagttcgtg gtatggatat
     1621 tattccagaa tccattgaag acgctaaacg aaacgccgag aagaatggca tcgaaaatgt
     1681 ttattatgaa gttgggaaag cagaagacgt attaccaaaa tgggtaaatg aaggtttccg
     1741 cccagacgca gtcatcgttg acccaccaag aagcggctgt gaccaaggcc taataaaatc
     1801 attactagat gtggaagcaa aacaacttgt ttatgtatcc tgtaatccat ccacattagc
     1861 acgtgactta gctttactcg cgaagaaata tcgcattcgc tatatgcaac ccgtcgatat
     1921 gttcccgcaa acagctcacg tggaaactgt agtactcttg cagttaaaag ataaataaag
     1981 gactggtggt acatgatttc aggattaagc catatcactt taattgtgaa agatttgaat
     2041 aaaacaactg ctttcttaca gaatattttt aatgcagaag aaatctattc tagtggcgac
     2101 aaaacatttt cgctttccaa agaaaaattt tttctaatag ctggtttgtg gatttgcatt
     2161 atggaaggag attctttaca agagcgaact tacaatcata ttgctttcca aattcaatcc
     2221 gaggaagtgg atgaatatac tgagcggatt aaagctctcg gtgtggaaat gaaaccagaa
     2281 cgtcccagag tccaaggtga aggacgttcc atttattttt atgattttga taatcatctg
     2341 tttgaattac acgctggtac attagaagaa cgcttaaaaa ggtatcacga atagaaataa
     2401 cacctaatag gaggaaacaa acatgaaaaa actatttgat gaaacgaatg aatttgaagc
     2461 aaagtactac cgaaatattt ggtacggcta catcgacaat gaattcgcgc cagaattaag
     2521 tgatgaaata aaacaactca ttcaaagcga ccttacagaa aaaacagcaa atccaatcga
     2581 agcaactcac tgggtttttt atagcgaaac ccaagcaggg gacgcaattg gtgataaagt
     2641 ccgctcttcc attatggttc gccaccggga taataagttt gtcgtccatt acaacgtgag
     2701 cgatttccaa tttgttactg tatttgatgt ggcaaccgcc tttaaagacc aattagaaca
     2761 agcattgaat gcgtaaataa aaaatcccgt ctatttttat agacgggatt ttcgttcatc
     2821 caagttcttt ccagtgccaa ttaccaatat gtaaaccttg gttcatttca ctagatgtaa
     2881 aactatcggc tctagcttct gtttttgctc gtgttaatga agtcgcactt ccaaaactat
     2941 ttgcggtttc ataatggtat tcttggttgt tcaaacggat aataatggca cgaccagaag
     3001 gatgttttcc aat
//
LOCUS       DABQVC010000438         2512 bp    DNA     linear   BCT 02-SEP-2020
DEFINITION  TPA_asm: Listeria monocytogenes strain food isolate of. L.
            monocytogenes isolate 15-01745 SAMEA4653048-rid10000633.guided.266,
            whole genome shotgun sequence.
ACCESSION   DABQVC010000438 DABQVC010000000
VERSION     DABQVC010000438.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4653048
            Sequence Read Archive: ERR2570933
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol. 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 05-JUN-2020
            Assembly Method       :: SKESA v. unknown
            Assembly Name         :: PDT000457397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000457397.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2020 03:16:01
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,990
            Genes (coding)                    :: 2,966
            CDSs (with protein)               :: 2,966
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 13 of 24
            Pseudo Genes (incomplete)         :: 6 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4653048-rid10000633.guided.266"
                     /strain="food isolate of. L. monocytogenes"
                     /serovar="IVb"
                     /isolate="15-01745"
                     /isolation_source="food"
                     /host="Listeria monocytogenes"
                     /db_xref="taxon:1639"
                     /country="Germany"
                     /collection_date="2015"
     gene            <1..657
                     /locus_tag="IBJ56_003033"
     CDS             <1..657
                     /locus_tag="IBJ56_003033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAM3419254.1"
                     /translation="ENEATIKLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTT
                     KDIKKISNRIQTKKKILENHLRGQQIDRYIVRSLYANQIDPSELTPAKIREQMISKME
                     KQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVSIMTLQEPIYWNDVK
                     IKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKLKMMMEESE
                     "
     gene            949..>2512
                     /gene="abc-f"
                     /locus_tag="IBJ56_003034"
     CDS             949..>2512
                     /gene="abc-f"
                     /locus_tag="IBJ56_003034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein"
                     /protein_id="HAM3419255.1"
                     /translation="MSTIEINQLKIEVADRVLVEIPHLLVSKKARIGIIGQNGLGKTT
                     LMEVIAGAKEAISGTVTTQGKLAYIKQLSTDTSTKSGGEKTRKAIQHAMRQNPSVLLA
                     DEPTSNLDVESVKHLERQWSDFHGALIIISHDRTFLDALCTEIWEIKNQKIHVYKGNY
                     HAYLEQKQQQENQAELVYKEFKNKKQQLQASQTHHEIEAGRIVKPGKRLNNKEASAFK
                     AGKGTQQKKQHSTIKALEKRIERLGNVEKPHTTKPIKMITPDNRVIKKGNTILSVKET
                     TYEIAGRKLFETKAFSIKAGDKVALIGENASGKTTFLKEIIQENPNLLCNPQAKIAYF
                     DQELNGLNQTKSLLENISEISVQTKQVNREVLGSMHFKESDLHKEVRMLSGGERVKLL
                     LSMLLVSDANFLILDEPTNYLDIYAMEALETLIKQFAGTVLFVSHDRTFVNHVAEQLL
                     VIENNEMTFHRMTFAEYEESKAPSRITEEDKLILEMRMSEIAAKLMQPNLKPTEKAML
                     EQDYQEIITKRQQ"
BASE COUNT          968 a          505 c          463 g          576 t
ORIGIN      
        1 gaaaatgaag ctaccatcaa actgatagaa aacgaggact ctgaagaaaa ttttgatatc
       61 attttaacaa caaaccgaga tattgctctt gaaaaagcgg gttccatttt tattcatccc
      121 ttactaacga cgaaggatat caagaaaatc agcaatcgaa tccaaacaaa gaaaaaaatc
      181 ttggaaaatc acttgcgagg tcaacaaatt gatcgctaca tcgttcgttc cctctacgcc
      241 aaccaaattg acccctcaga actgacaccc gcaaaaatca gagagcaaat gatttctaaa
      301 atggaaaaac aaaccttcgt cacgccggaa tttaaagaaa aagtcgaaaa aagggaacga
      361 atggcgccaa caagcttccc atccggcatt gctataccac attctatcaa gaatgatgcc
      421 cttcaaagtg gtgtatctat aatgacgcta caagagccga tttattggaa tgacgtcaaa
      481 ataaaaataa ttgctctcgt cgccatcagc aaaaaagatg caacagagtt caatgatttt
      541 tttgaaaagt ttgtagaaat cgtctccgaa ccgattaata ctaaacgttt atcaatggcc
      601 gaaagtttcg aggagttcat ccaaaaacta aaaatgatga tggaagaaag tgagtaaatg
      661 gccacacata agccgtgtaa ttctatttac acggcttata aaggttgaag tgacgataaa
      721 attacgctat aatataacca tcaaacgaaa aggagtgtta tcttaagcca atgaaattct
      781 aatcctgtat tatatgaaaa aatgaagaaa gctatccaat tctcggatag aaactatttt
      841 ttcggacggg attcgtatgt tcatttcgca tgataactct tgctacaggc ctttttttgg
      901 cgtagcctcg cggattcctc tctggaaata ttcaggaggt tattttttat gtctacaatc
      961 gaaataaatc aattaaaaat agaagtagca gacagagttt tagtagaaat ccctcatctg
     1021 ctagttagta aaaaagcaag aatcggcatc atcggtcaaa atggtctagg aaaaacaaca
     1081 ctaatggaag tgattgctgg cgctaaagaa gcaatatctg gcacggtgac tacccaagga
     1141 aaacttgctt acatcaaaca actttccact gatacaagta cgaaaagcgg cggcgaaaaa
     1201 acaagaaaag caattcaaca tgcgatgcgc caaaacccaa gtgttctcct agcagatgaa
     1261 ccgacaagca acctcgatgt cgaaagcgtc aaacatttag aacgtcagtg gagcgatttc
     1321 cacggtgcgc tcataattat atcgcatgac cgtacctttt tagatgcact ttgtacagaa
     1381 atatgggaaa tcaaaaacca aaaaattcac gtatacaaag gaaactacca cgcgtattta
     1441 gaacaaaaac aacaacaaga aaaccaagcg gaactcgtat acaaagaatt taaaaacaaa
     1501 aagcaacaac tacaagcctc ccaaacacac catgaaatcg aagcaggtcg cattgtcaaa
     1561 cctggaaaac gcctaaacaa caaagaagcc agcgcgttta aagccggaaa aggcacacaa
     1621 caaaagaaac aacacagtac catcaaagct ttagaaaaac gaattgaacg gctcggcaat
     1681 gtcgaaaaac cacatacaac taaaccaatc aaaatgatca ccccagacaa tcgcgtcata
     1741 aaaaaaggta atacgatact aagtgtcaaa gaaacaacct acgagatcgc aggacgaaaa
     1801 ctatttgaaa caaaagcttt ttctattaaa gcaggggata aagtggcgct aatcggtgaa
     1861 aatgcgagcg ggaaaactac atttttaaaa gaaataatcc aagaaaatcc taatctccta
     1921 tgtaatcccc aagcgaaaat tgcttatttc gaccaagaat tgaatggatt aaaccaaacg
     1981 aaatccctgt tagaaaacat ctcggaaatt agcgttcaaa ccaagcaagt aaacagagaa
     2041 gtactaggta gcatgcattt taaagaaagc gatttgcata aggaagtgcg catgctctct
     2101 ggcggggaac gagtgaagtt gctgctcagt atgctcctcg ttagtgacgc caatttcttg
     2161 attcttgatg aaccaaccaa ctatttggat atctatgcaa tggaagcgct ggaaacgtta
     2221 atcaaacaat ttgcggggac agtactattc gtttcgcatg atagaacttt tgttaaccac
     2281 gtggcagaac aattactcgt catcgaaaat aatgaaatga ctttccaccg gatgactttc
     2341 gcggaatatg aagaaagtaa agcgccaagt cgcatcacag aagaagataa gttgatttta
     2401 gaaatgcgca tgtcagaaat tgcagccaag cttatgcaac cgaatttaaa gcccacagaa
     2461 aaagccatgc tcgaacaaga ttatcaagaa attatcacaa aaagacaaca at
//
